Query 040509
Match_columns 226
No_of_seqs 210 out of 1470
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:09:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09501 potD spermidine/putre 99.9 3.2E-24 6.9E-29 194.7 15.1 153 8-177 192-346 (348)
2 COG0687 PotD Spermidine/putres 99.9 4.9E-24 1.1E-28 195.6 15.0 154 8-177 203-361 (363)
3 PRK10682 putrescine transporte 99.9 3.9E-23 8.4E-28 189.0 14.2 152 10-177 209-368 (370)
4 PRK11622 hypothetical protein; 99.5 1.3E-13 2.8E-18 128.2 14.3 137 26-174 256-396 (401)
5 TIGR03261 phnS2 putative 2-ami 99.5 1.2E-13 2.6E-18 124.7 10.1 77 26-106 204-280 (334)
6 PF13343 SBP_bac_6: Bacterial 99.5 1.2E-13 2.5E-18 118.7 9.0 94 7-106 112-207 (242)
7 TIGR01276 thiB thiamine ABC tr 99.4 1.9E-12 4.1E-17 115.4 9.0 77 26-106 180-258 (309)
8 TIGR01254 sfuA ABC transporter 99.3 3.5E-12 7.5E-17 113.6 9.1 77 26-106 181-259 (304)
9 PRK11205 tbpA thiamine transpo 99.3 7.9E-12 1.7E-16 112.7 9.5 77 26-106 201-279 (330)
10 TIGR03227 PhnS 2-aminoethylpho 99.1 1.3E-10 2.7E-15 106.9 8.8 76 27-106 217-299 (367)
11 PF13416 SBP_bac_8: Bacterial 99.0 2.4E-09 5.2E-14 92.5 10.0 97 26-132 177-275 (281)
12 TIGR01256 modA molybdenum ABC 99.0 8E-10 1.7E-14 93.4 6.1 74 26-105 139-212 (216)
13 COG1840 AfuA ABC-type Fe3+ tra 98.9 4.7E-09 1E-13 94.1 9.6 75 27-105 166-242 (299)
14 PRK15046 2-aminoethylphosphona 98.9 1E-08 2.2E-13 93.3 9.5 76 27-106 211-292 (349)
15 TIGR00971 3a0106s03 sulfate/th 98.5 4.7E-07 1E-11 82.3 9.9 75 27-106 184-264 (315)
16 PRK10752 sulfate transporter s 98.4 1.1E-06 2.4E-11 80.7 9.8 74 29-106 197-275 (329)
17 COG4134 ABC-type uncharacteriz 98.4 5.9E-07 1.3E-11 82.7 7.3 101 24-132 244-347 (384)
18 COG4143 TbpA ABC-type thiamine 98.3 3.7E-06 8E-11 77.0 8.7 95 27-132 207-304 (336)
19 PRK10852 thiosulfate transport 98.2 1E-05 2.2E-10 74.6 10.1 78 27-106 201-281 (338)
20 PF13531 SBP_bac_11: Bacterial 98.1 7.1E-06 1.5E-10 69.8 6.3 77 25-106 147-225 (230)
21 PRK10677 modA molybdate transp 98.0 2E-05 4.2E-10 69.7 7.0 73 26-105 177-249 (257)
22 PRK03537 molybdate ABC transpo 97.9 3.8E-05 8.1E-10 64.7 7.1 70 31-106 108-178 (188)
23 PRK09474 malE maltose ABC tran 97.7 0.00026 5.6E-09 64.7 10.6 77 26-106 237-320 (396)
24 PF01547 SBP_bac_1: Bacterial 97.7 0.00014 2.9E-09 62.7 7.8 75 25-103 223-315 (315)
25 PRK04168 molybdate ABC transpo 97.3 0.00075 1.6E-08 62.1 7.0 71 27-106 213-310 (334)
26 TIGR03850 bind_CPR_0540 carboh 97.2 0.0021 4.5E-08 59.5 9.7 75 27-105 269-354 (437)
27 TIGR03851 chitin_NgcE carbohyd 96.8 0.0069 1.5E-07 56.6 9.2 76 27-106 272-361 (450)
28 COG0725 ModA ABC-type molybdat 96.6 0.0055 1.2E-07 54.7 6.7 73 27-105 177-249 (258)
29 PF02030 Lipoprotein_8: Hypoth 96.4 0.0028 6.1E-08 61.2 3.4 72 23-98 250-335 (493)
30 COG1653 UgpB ABC-type sugar tr 95.8 0.038 8.3E-07 49.8 8.0 98 4-104 230-342 (433)
31 PRK10974 glycerol-3-phosphate 95.3 0.45 9.7E-06 44.4 13.2 76 27-106 255-342 (438)
32 TIGR03730 tungstate_WtpA tungs 92.5 0.2 4.3E-06 45.0 4.8 66 26-96 185-273 (273)
33 COG1613 Sbp ABC-type sulfate t 92.0 0.89 1.9E-05 42.0 8.3 69 32-106 217-292 (348)
34 COG4150 CysP ABC-type sulfate 80.3 2.8 6.1E-05 37.9 4.5 89 10-106 184-286 (341)
35 COG2182 MalE Maltose-binding p 73.9 17 0.00037 34.9 8.2 99 2-106 227-335 (420)
36 PRK11063 metQ DL-methionine tr 60.3 29 0.00062 31.0 6.4 78 24-106 183-260 (271)
37 TIGR00363 lipoprotein, YaeC fa 56.9 20 0.00044 31.9 4.8 79 23-106 169-247 (258)
38 PF09084 NMT1: NMT1/THI5 like; 52.8 31 0.00066 28.4 5.0 36 26-61 32-67 (216)
39 cd00134 PBPb Bacterial peripla 45.5 78 0.0017 24.5 6.1 67 26-98 136-203 (218)
40 smart00062 PBPb Bacterial peri 38.3 99 0.0021 23.8 5.7 65 25-92 136-202 (219)
41 PF15056 NRN1: Neuritin protei 34.6 18 0.00038 27.5 0.7 15 169-183 58-72 (89)
42 PRK11553 alkanesulfonate trans 34.5 96 0.0021 27.3 5.6 69 26-98 166-235 (314)
43 TIGR01098 3A0109s03R phosphate 33.9 1.5E+02 0.0032 24.9 6.5 53 26-80 184-240 (254)
44 TIGR03427 ABC_peri_uca ABC tra 32.5 79 0.0017 29.0 4.8 70 25-97 142-212 (328)
45 TIGR01729 taurine_ABC_bnd taur 31.4 98 0.0021 27.1 5.1 70 25-99 136-209 (300)
46 TIGR01728 SsuA_fam ABC transpo 31.3 94 0.002 26.2 4.8 70 24-96 136-207 (288)
47 COG4521 TauA ABC-type taurine 31.0 68 0.0015 29.3 3.9 59 21-80 62-121 (334)
48 COG4588 AcfC Accessory coloniz 30.4 1.6E+02 0.0035 26.1 6.0 72 25-105 172-245 (252)
49 PF09084 NMT1: NMT1/THI5 like; 28.6 58 0.0013 26.7 3.0 65 27-92 131-199 (216)
50 TIGR03431 PhnD phosphonate ABC 26.5 1.7E+02 0.0037 25.4 5.7 77 26-105 178-259 (288)
51 TIGR01729 taurine_ABC_bnd taur 25.1 1.3E+02 0.0029 26.2 4.8 34 27-60 39-72 (300)
52 COG2998 TupB ABC-type tungstat 24.0 95 0.0021 28.0 3.5 50 55-106 208-259 (280)
53 PF12974 Phosphonate-bd: ABC t 23.0 4.2E+02 0.0092 22.2 7.4 56 25-80 39-96 (243)
54 COG5514 Uncharacterized conser 22.4 79 0.0017 27.0 2.6 46 34-79 79-127 (203)
55 TIGR01728 SsuA_fam ABC transpo 20.7 1.9E+02 0.0042 24.3 4.8 35 26-60 40-74 (288)
No 1
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed
Probab=99.92 E-value=3.2e-24 Score=194.68 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=129.1
Q ss_pred HHHHHHHhHhhhh--cccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCH
Q 040509 8 IRSIQESSTKFWY--GVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTN 85 (226)
Q Consensus 8 ~~~~~e~l~~~~~--~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~ 85 (226)
++++.+.++++.+ ..+..+...+.+.+||++++++|+++...++..|.++++++|+||+.+|+|+++|||+++ |+
T Consensus 192 ~~~a~~~l~~l~~~v~~~~~~~~~~~l~~Gev~i~~~w~~~~~~~~~~g~~i~~~~P~eG~~~~~~~~~i~k~a~---n~ 268 (348)
T PRK09501 192 IEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAK---NK 268 (348)
T ss_pred HHHHHHHHHHhhhhhEEEcCcHHHHHHHcCCEEEEEeehHHHHHHHhcCCCceEEecCCCcceEEEeeeEECCCC---CH
Confidence 3444555555443 234445667899999999999999999988888999999999999999999999999999 99
Q ss_pred HHHHHHHHhhCCCHHhhhccccccccCCCCCCcchhcccCCchhhhcCCCCCCCCcccCCCcHHHhhhceecCCCCHHHH
Q 040509 86 WRASQWSISIDPSMDRILLPFKQEVIPGTSPSALETTLVKLPEELLKGKPSLGTDLIAGVPPAEILARCEFLEPLSEATF 165 (226)
Q Consensus 86 e~A~kFI~nfll~Pe~qa~~~~~e~i~~~s~~~n~aa~~~l~~el~~~~p~~~p~l~~i~P~~e~l~r~e~~~~l~~~~~ 165 (226)
++|++|| ||+++||+|+.++ +..++ +++|..+...+++++++ +| .+||+++.+++++++.++++. .
T Consensus 269 e~A~~Fi-~~llspe~q~~~~--~~~~~--~~~n~~a~~~l~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~-~ 334 (348)
T PRK09501 269 EGALKLI-NFLLRPDVAKQVA--ETIGY--PTPNLAARKLLSPEVAN-----DK---SLYPDAETIKKGEWQNDVGAA-S 334 (348)
T ss_pred HHHHHHH-HHHhCHHHHHHHH--HHhCC--CChhHHHHHhCCHHHhc-----CC---CcCcCHHHHhccEEecCCCHH-H
Confidence 9999999 9999999999986 45555 55688888899999987 34 479999999999999999864 6
Q ss_pred HHHHHHHHHhhc
Q 040509 166 DVLRWLKFLRFY 177 (226)
Q Consensus 166 ~~y~~iW~~i~~ 177 (226)
++|+++|++|+.
T Consensus 335 ~~~~~~w~~~~~ 346 (348)
T PRK09501 335 SIYEEYYQKLKA 346 (348)
T ss_pred HHHHHHHHHHhc
Confidence 899999999986
No 2
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]
Probab=99.91 E-value=4.9e-24 Score=195.62 Aligned_cols=154 Identities=20% Similarity=0.164 Sum_probs=128.6
Q ss_pred HHHHHHHhHhhhh---cccchhhHHHHhhcCcEEEEEeccccHHHHH--HcCCCeEEEecCCCceeeeeeEEEeCCCCCC
Q 040509 8 IRSIQESSTKFWY---GVVKLYTLSEAFGIRDVWVAVGWSSDVLPAV--KRMSNVAVVVPKSGASLWADLWAIPAASRLH 82 (226)
Q Consensus 8 ~~~~~e~l~~~~~---~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~--~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~ 82 (226)
+.++.+.|.++.+ ..++++++.+.|++||++|+++|+|++..++ .++.+++|++|+||+.+|+|+|+|||+++
T Consensus 203 ~~~a~~~L~~~kp~~~~~~~~~~~~~~l~~Gev~~a~~w~g~~~~~~~~~~~~~i~~~~p~eG~~~w~D~~~ipk~a~-- 280 (363)
T COG0687 203 LKKAFDLLDKLKPVNVYWFDGSQYVQLLANGEVVLAMGWSGDAAAAKAAKNGAPIEFVIPKEGSILWFDNLAIPKGAK-- 280 (363)
T ss_pred HHHHHHHHHHhCcccEEEecchHHHHHHhcCCEEEEEEeChHHHHHHHhhcCCceEEEcCCCCceeeeEeeeeeCCCC--
Confidence 3445555555444 4567789999999999999999999999996 67788999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCCHHhhhccccccccCCCCCCcchhcccCCchhhhcCCCCCCCCcccCCCcHHHhhhceecCCCCH
Q 040509 83 KTNWRASQWSISIDPSMDRILLPFKQEVIPGTSPSALETTLVKLPEELLKGKPSLGTDLIAGVPPAEILARCEFLEPLSE 162 (226)
Q Consensus 83 ~n~e~A~kFI~nfll~Pe~qa~~~~~e~i~~~s~~~n~aa~~~l~~el~~~~p~~~p~l~~i~P~~e~l~r~e~~~~l~~ 162 (226)
|+++|++|| |||++||+|++++ +.++| +++|..+..+++.+... +| .++|+.+.+.+......+++
T Consensus 281 -n~~~A~~fI-nf~~~pe~~a~~~--~~~~y--~~~n~~a~~~~~~~~~~-----~~---~~~p~~~~~~~~~~~~~~~~ 346 (363)
T COG0687 281 -NVDAAYKFI-NFLLDPEVAAKLA--EFVGY--APPNKAARKLLPKEIKD-----DP---AIYPTAEILKKLFGQKDLGP 346 (363)
T ss_pred -CHHHHHHHH-HHhhCHHHHHHHH--HhccC--CCCCHHHHHhCcHhhhc-----Cc---ccCCCHHHhhcccchhhccH
Confidence 999999999 9999999999997 66677 44577777766665544 34 46999999899988888887
Q ss_pred HHHHHHHHHHHHhhc
Q 040509 163 ATFDVLRWLKFLRFY 177 (226)
Q Consensus 163 ~~~~~y~~iW~~i~~ 177 (226)
+..+.|.+.|++++.
T Consensus 347 ~~~~~~~~~~~~~~~ 361 (363)
T COG0687 347 EALRLYTKAWQEIKA 361 (363)
T ss_pred HHHHHHHHHHHHHhc
Confidence 778999999999875
No 3
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional
Probab=99.90 E-value=3.9e-23 Score=188.99 Aligned_cols=152 Identities=21% Similarity=0.162 Sum_probs=126.8
Q ss_pred HHHHHhHhhhh--cccchhhHHHHhhcCcEEEEEeccccHHHHH------HcCCCeEEEecCCCceeeeeeEEEeCCCCC
Q 040509 10 SIQESSTKFWY--GVVKLYTLSEAFGIRDVWVAVGWSSDVLPAV------KRMSNVAVVVPKSGASLWADLWAIPAASRL 81 (226)
Q Consensus 10 ~~~e~l~~~~~--~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~------~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~ 81 (226)
++.+.++++.. +.+.+++..+.|.+||++|+++|+|++..++ +.+.++++++|+||+..|.|+++|||+++
T Consensus 209 ~a~~~l~~l~~~v~~~~~~~~~~~l~~Gev~~~~~w~~~~~~~~~~~~~~~~~~~i~~v~P~eG~~~~~d~~~I~k~a~- 287 (370)
T PRK10682 209 PATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSYSIPKEGALAFFDVFAMPADAK- 287 (370)
T ss_pred HHHHHHHHhchhhEEEcCcHHHHHHhcCCEEEEEeecHHHHHHHHHHHhcccCCceEEEECCCcchhheeeeEEECCCC-
Confidence 34444444443 2344456778999999999999999987664 35789999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhCCCHHhhhccccccccCCCCCCcchhcccCCchhhhcCCCCCCCCcccCCCcHHHhhhceecCCCC
Q 040509 82 HKTNWRASQWSISIDPSMDRILLPFKQEVIPGTSPSALETTLVKLPEELLKGKPSLGTDLIAGVPPAEILARCEFLEPLS 161 (226)
Q Consensus 82 ~~n~e~A~kFI~nfll~Pe~qa~~~~~e~i~~~s~~~n~aa~~~l~~el~~~~p~~~p~l~~i~P~~e~l~r~e~~~~l~ 161 (226)
|+++|++|| ||+++||+|+.++ +.++|. | +|..+...+++++++ +| .+||+.+.+.+++++++++
T Consensus 288 --~~e~A~~Fi-~f~lspe~qa~~a--~~~~y~-p-~~~~a~~~~~~~~~~-----~p---~~~~~~~~~~~~~~~~~~~ 352 (370)
T PRK10682 288 --NKDEAYQFL-NYLLRPDVIAHIS--DHVFYA-N-ANKAATPLVSAEVRD-----NP---GIYPPADVRAKLFTLKVQD 352 (370)
T ss_pred --CHHHHHHHH-HHHhCHHHHHHHH--HHhCCC-C-ccHHHHHhcCHHHhc-----CC---CcCCCHHHHhCcEEecCCC
Confidence 999999999 9999999999997 556663 3 577777778888876 45 4799999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 040509 162 EATFDVLRWLKFLRFY 177 (226)
Q Consensus 162 ~~~~~~y~~iW~~i~~ 177 (226)
+...++|+++|++++.
T Consensus 353 ~~~~~~~~~~w~~~~~ 368 (370)
T PRK10682 353 PKIDRVRTRAWTKVKS 368 (370)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 8888999999999986
No 4
>PRK11622 hypothetical protein; Provisional
Probab=99.53 E-value=1.3e-13 Score=128.22 Aligned_cols=137 Identities=16% Similarity=0.074 Sum_probs=94.2
Q ss_pred hhHHHHhhcCcEEEEEecccc-HHHHHHcC---CCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHh
Q 040509 26 YTLSEAFGIRDVWVAVGWSSD-VLPAVKRM---SNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDR 101 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd-~~~a~~~~---~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~ 101 (226)
.+..++|.+||+.|+++|++. +...+.+| .++++++|+||+..+.++++||++++ |+++|++|| ||+++||.
T Consensus 256 ~~~~~~~~~GEv~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~G~~~~~~~~~Ipk~a~---n~~~A~~fi-nfllS~e~ 331 (401)
T PRK11622 256 AELDQLLADGELDLAMTFNPNHAQSKIANGELPASTRSFVFDDGTIGNTHFVAIPFNAN---AKAGAKVVA-NFLLSPEA 331 (401)
T ss_pred HHHHHHHHCCCeEEEEecChHHHHHHHhcCCCCCceeEEcCCCCeeccceeEEeeCCCC---CHHHHHHHH-HHHcCHHH
Confidence 367889999999999999974 44545666 36899999999999999999999999 999999999 99999999
Q ss_pred hhccccccccCCCCCCcchhcccCCchhhhcCCCCCCCCcccCCCcHHHhhhceecCCCCHHHHHHHHHHHHH
Q 040509 102 ILLPFKQEVIPGTSPSALETTLVKLPEELLKGKPSLGTDLIAGVPPAEILARCEFLEPLSEATFDVLRWLKFL 174 (226)
Q Consensus 102 qa~~~~~e~i~~~s~~~n~aa~~~l~~el~~~~p~~~p~l~~i~P~~e~l~r~e~~~~l~~~~~~~y~~iW~~ 174 (226)
|+....+..+++ .| ++. ...++++.++.+....+.- ... +++.+.+... ....+......+.|.+
T Consensus 332 Q~~~~~~~~~g~-~P-~~~--~~~l~~e~~~~~~~~~~~~-~~~-~~~~~~~~~~--~~~~~~~~~~~~~w~~ 396 (401)
T PRK11622 332 QLRKADPAVWGD-PS-VLD--PQKLPEEQRAAFAALDLGA-ATL-QPELLPPALP--EPHASWVEALEQEWQR 396 (401)
T ss_pred HHHhcchhhcCC-CC-cCC--hhhCCHHHHHHHhcccccc-ccC-ChhHhcccCC--CCChHHHHHHHHHHHH
Confidence 998863112344 23 232 2478988886543322210 122 4455554322 2122333445555554
No 5
>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.49 E-value=1.2e-13 Score=124.68 Aligned_cols=77 Identities=19% Similarity=0.143 Sum_probs=72.5
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhhcc
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRILLP 105 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa~~ 105 (226)
.+..+++.+||+.+|++|++++..++.+|.++++++|+||+..+++.++|+|+++ |+++|++|| ||+++||.|..+
T Consensus 204 ~~~~~~v~~Ge~~i~~~~~~~~~~~~~~g~~v~~~~P~eG~~~~~~~~ai~k~a~---~~e~A~~fi-dfllS~e~Q~~~ 279 (334)
T TIGR03261 204 SKPCKLAGMGEFPIGISMAYRALKEKKKGAPIDVVFPKEGLGWDIEATAIIKGSK---NNDAAKKLV-DWSISDEAMELY 279 (334)
T ss_pred hHHHHHHhCCCceEEEEecHHHHHHHhCCCCeEEEecCCCCeeeeeeeEEEcCCC---CHHHHHHHH-HHHcCHHHHHHH
Confidence 4677889999999999999999988888999999999999999999999999999 999999999 999999999987
Q ss_pred c
Q 040509 106 F 106 (226)
Q Consensus 106 ~ 106 (226)
.
T Consensus 280 ~ 280 (334)
T TIGR03261 280 A 280 (334)
T ss_pred H
Confidence 4
No 6
>PF13343 SBP_bac_6: Bacterial extracellular solute-binding protein; PDB: 2QRY_D 1XVX_A 1SI1_A 1SI0_A 1Q35_A 1Y9U_A 2OWS_A 2OWT_A 2VP1_A 2VOZ_A ....
Probab=99.48 E-value=1.2e-13 Score=118.75 Aligned_cols=94 Identities=16% Similarity=0.126 Sum_probs=78.4
Q ss_pred HHHHHHHHhHhhhhcccchhhHHHHhhcCc--EEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCC
Q 040509 7 AIRSIQESSTKFWYGVVKLYTLSEAFGIRD--VWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKT 84 (226)
Q Consensus 7 ~~~~~~e~l~~~~~~~~~~~~~~~~l~~GE--v~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n 84 (226)
+..+..+.+++... .+...+..+.+.+|| +.+++.|.++....+..+ ++++++|+||+.+|+++++|+++++ |
T Consensus 112 ~~~~~l~~l~~n~~-~~~~~~~~~~~~~Ge~~~~i~~~~~~~~~~~~~~~-~i~~v~P~eG~~~~~~~~~i~k~a~---~ 186 (242)
T PF13343_consen 112 AGWEWLRELKANGA-TFSSSQAAQAVASGEGAVAIGISWYSRAAQAKEKG-PIKFVYPEEGTVVWPDGIAIVKGAP---N 186 (242)
T ss_dssp HHHHHHHHHHHCBS-SSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHCTTT-TEEEE-TTTGBEEEEEEEEEBTT-S---T
T ss_pred HHHHHHHHHHhhcc-cccchhhhhHhhCCCceEEEEEehHHHHHHhhhcC-CeEEEecCCCcEEEEEEEEEeCCCC---C
Confidence 33444444444444 334668899999999 999999999999888777 9999999999999999999999999 9
Q ss_pred HHHHHHHHHhhCCCHHhhhccc
Q 040509 85 NWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 85 ~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
+++|++|| ||+++|+.|..+.
T Consensus 187 ~~~A~~fi-~~lls~e~q~~~~ 207 (242)
T PF13343_consen 187 PEAAKKFI-NFLLSPEAQKILA 207 (242)
T ss_dssp HHHHHHHH-HHHTSHHHHHHHH
T ss_pred HHHHHHHH-HHHCCHHHHHHHH
Confidence 99999999 9999999999886
No 7
>TIGR01276 thiB thiamine ABC transporter, periplasmic binding protein. This model finds the thiamine (and thiamine pyrophosphate) ABC transporter periplasmic binding protein ThiB in proteobacteria. Completed genomes having this protein (E. coli, Vibrio cholera, Haemophilus influenzae) also have the permease ThiP, described by TIGRFAMs equivalog model TIGR01253.
Probab=99.37 E-value=1.9e-12 Score=115.35 Aligned_cols=77 Identities=14% Similarity=-0.050 Sum_probs=67.5
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHH--HHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhh
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPA--VKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRIL 103 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a--~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa 103 (226)
.+..+++.+||++|+++|+++.... ...+.++.+++|+||+..|+++++|+|+++ |+++|++|| ||+++||.|+
T Consensus 180 ~~~~~~~~~Ge~~i~i~~~~~~~~~~~~~~~~~~~~~~~~eG~~~~~~~~ai~k~a~---n~e~A~~Fi-dflls~e~Q~ 255 (309)
T TIGR01276 180 SEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASK---QPELAQKFL-QFLVSPAFQN 255 (309)
T ss_pred HHHHHHHHcCCcCEEEecCCcHHHHhhcccCcccceEecCCCCEeEEEEEEEeCCCC---CHHHHHHHH-HHHcCHHHHH
Confidence 3567789999999999999887543 233567889999999999999999999999 999999999 9999999998
Q ss_pred ccc
Q 040509 104 LPF 106 (226)
Q Consensus 104 ~~~ 106 (226)
.+.
T Consensus 256 ~~~ 258 (309)
T TIGR01276 256 AIP 258 (309)
T ss_pred HHH
Confidence 775
No 8
>TIGR01254 sfuA ABC transporter periplasmic binding protein, thiB subfamily. The model describes thiamine ABC transporter, periplasmic protein in bacteria and archae. The protein belongs to the larger ABC transport system. It consists of at least three components: the thiamine binding periplasmic protein; an inner membrane permease; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP).
Probab=99.34 E-value=3.5e-12 Score=113.60 Aligned_cols=77 Identities=10% Similarity=-0.080 Sum_probs=67.9
Q ss_pred hhHHHHhhcCcEEEEEeccccH-HH-HHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhh
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDV-LP-AVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRIL 103 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~-~~-a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa 103 (226)
.+....+.+||+.|+++|+++. .. .+.++.++.++.|++|+..|+|+++|+++++ |+++|++|| |||++||.|+
T Consensus 181 ~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ai~k~a~---n~e~A~~fi-~fllspe~q~ 256 (304)
T TIGR01254 181 SEAYGTFLGGEYDLVLSYATSPAYHVLFEKKDNYAALNFSEGHYLQVEGAARLKGAK---QPELADKFV-QFLLSPAVQN 256 (304)
T ss_pred HHHHHHHhcCCccEEEEeccchhhhhhhccCCceeEEecCCCCEEEEEEEEEECCCC---CHHHHHHHH-HHHcCHHHHH
Confidence 3566789999999999999874 32 3445678999999999999999999999999 999999999 9999999999
Q ss_pred ccc
Q 040509 104 LPF 106 (226)
Q Consensus 104 ~~~ 106 (226)
.++
T Consensus 257 ~~a 259 (304)
T TIGR01254 257 AIP 259 (304)
T ss_pred HHH
Confidence 876
No 9
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional
Probab=99.31 E-value=7.9e-12 Score=112.66 Aligned_cols=77 Identities=14% Similarity=-0.014 Sum_probs=67.2
Q ss_pred hhHHHHhhcCcEEEEEecccc-HHHHHHc-CCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhh
Q 040509 26 YTLSEAFGIRDVWVAVGWSSD-VLPAVKR-MSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRIL 103 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd-~~~a~~~-~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa 103 (226)
.+..+++.+||+.||++|+++ +.....+ +.++.+++|+||+..|+++++|+++++ |+++|++|| ||+++||.|+
T Consensus 201 ~~~~~~~~~Ge~~~~i~~~~~~~~~~~~~~~~~~~~~~~~eG~~~~~~~~ai~k~a~---n~e~A~~Fi-~fllS~e~Q~ 276 (330)
T PRK11205 201 SEAYGLFLKGEADLVLSYTTSPAYHIIAEKKDNYAAANFSEGHYLQVEVAARTAASK---QPELAQKFL-QFMVSPAFQN 276 (330)
T ss_pred HHHHHHHHcCCccEEEeCCCcHHHHHhhccCCceeEEEcCCCCeEEEEEEEEeCCCC---CHHHHHHHH-HHHcCHHHHH
Confidence 466789999999999999975 4444444 457888899999999999999999999 999999999 9999999999
Q ss_pred ccc
Q 040509 104 LPF 106 (226)
Q Consensus 104 ~~~ 106 (226)
.++
T Consensus 277 ~~~ 279 (330)
T PRK11205 277 AIP 279 (330)
T ss_pred Hhh
Confidence 876
No 10
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=99.15 E-value=1.3e-10 Score=106.89 Aligned_cols=76 Identities=13% Similarity=-0.036 Sum_probs=61.7
Q ss_pred hHHHHhhcCcEEEEEeccccH-HHHHHcCCCeEEEecCCC------ceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCH
Q 040509 27 TLSEAFGIRDVWVAVGWSSDV-LPAVKRMSNVAVVVPKSG------ASLWADLWAIPAASRLHKTNWRASQWSISIDPSM 99 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~-~~a~~~~~~i~~v~PkEG------~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~P 99 (226)
+..+++.+||++++.++.... ......|.++++++|++| +..+.++++|+|+++ |+++|++|| ||+++|
T Consensus 217 ~~~~~~~~Gev~i~~g~~~~~~~~~~~~g~~i~~~~P~~g~g~~~~~~~~~~~~~I~k~a~---n~e~A~~Fi-dfllsp 292 (367)
T TIGR03227 217 KLNALLNKGEIAVANGDLQMDLADAEHGGLNIKIFFPAADAGEPPSAFAIPYAIGLVKGAP---NQDAGKKLI-DFLLSA 292 (367)
T ss_pred hHHHHHhcCceEEEccHHHHHHHHHHhcCCCeEEEeecCCCCCCCcccccceeEEEecCCC---CHHHHHHHH-HHHcCH
Confidence 456788999999986644322 233345679999999986 456688999999999 999999999 999999
Q ss_pred Hhhhccc
Q 040509 100 DRILLPF 106 (226)
Q Consensus 100 e~qa~~~ 106 (226)
|+|+.+.
T Consensus 293 e~Q~~~a 299 (367)
T TIGR03227 293 DAQAKVP 299 (367)
T ss_pred HHHHHHH
Confidence 9999886
No 11
>PF13416 SBP_bac_8: Bacterial extracellular solute-binding protein; PDB: 2FNC_A 1ELJ_A 3TTM_B 3TTK_C 2W7Y_A 3RPW_A 2GHB_C 2GHA_A 1POY_3 1POT_A ....
Probab=99.00 E-value=2.4e-09 Score=92.51 Aligned_cols=97 Identities=20% Similarity=0.111 Sum_probs=80.9
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHH--HHHHHHhhCCCHHhhh
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWR--ASQWSISIDPSMDRIL 103 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~--A~kFI~nfll~Pe~qa 103 (226)
.+..+.+.+|++.+.++|+......++.+.++++++|++|+..+.++++|+++++ |++. |.+|| +|+++|+.|.
T Consensus 177 ~~~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~~~---~~~~~aA~~fl-~~l~s~e~q~ 252 (281)
T PF13416_consen 177 DDARQLFASGKVAMIIGGSWSISNLQKAGPDFGVAPPKDGTFVGGNGFAIPKNSK---NPEAEAAWEFL-KFLTSPEGQA 252 (281)
T ss_dssp HHHHHHHHTTSESEEEEEGHHHHHHHHTTTTEEEEECTTTEEEEEEEEEEBTTSS---THHHHHHHHHH-HHHTSHHHHH
T ss_pred hHHHHHhcCCCeeeecccHhHHHHHHHhCCCeeEecCccccccCcceEEEeCCCC---hHHHHHHHHHH-HHHcCHHHHH
Confidence 4778899999999999999999888888999999999999999999999999999 9998 99999 9999999999
Q ss_pred ccccccccCCCCCCcchhcccCCchhhhc
Q 040509 104 LPFKQEVIPGTSPSALETTLVKLPEELLK 132 (226)
Q Consensus 104 ~~~~~e~i~~~s~~~n~aa~~~l~~el~~ 132 (226)
.++ +..++. | ++..+. .++++.+
T Consensus 253 ~~~--~~~g~~-p-~~~~~~--~~~~~~~ 275 (281)
T PF13416_consen 253 EWA--EATGYL-P-VNKDVY--ESDEYKK 275 (281)
T ss_dssp HHH--HHHTSE-E-SBHHHH--HSHHHHT
T ss_pred HHH--HHhCCC-C-CChhhc--CCHHHhh
Confidence 886 333442 3 344332 2555554
No 12
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein. The model describes the molybdate ABC transporter periplasmic binding protein in bacteria and archae. Several of the periplasmic receptors constitute a diverse class of binding proteins that differ widely in size, sequence and ligand specificity. It has been shown experimentally by radioactive labeling that ModA represent hydrophylioc periplasmic-binding protein in gram-negative organisms and its counterpart in gram-positive organisms is a lipoprotein. The other components of the system include the ModB, an integral membrane protein and ModC the ATP-binding subunit. Invariably almost all of them display a common beta/alpha folding motif and have similar tertiary structures consisting of two globular domains.
Probab=98.98 E-value=8e-10 Score=93.39 Aligned_cols=74 Identities=12% Similarity=-0.028 Sum_probs=65.0
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhhcc
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRILLP 105 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa~~ 105 (226)
.+..+.+.+||++++++|.+++.... +....+++|++|...+.++++|+++++ |+++|++|| ||+++|+.|+.+
T Consensus 139 ~~~~~~~~~Ge~~~~~~~~~~~~~~~--~~~~~~~~P~~~~~~~~~~~ai~k~a~---~~~~A~~fi-~fl~s~e~q~~~ 212 (216)
T TIGR01256 139 RQALQFVETGNAPAGIVALSDVIPSK--KVGSVATFPEDLYKPIRYPAVIVKGGK---NNAAAKAFI-DYLKSPEAKEIL 212 (216)
T ss_pred HHHHHHHHcCCCCEEeeehhhhcccC--CccEEEEeCccccCCccccEEEEECCC---ChHHHHHHH-HHHcCHHHHHHH
Confidence 46778899999999999999877653 334668899999988999999999999 999999999 999999998765
No 13
>COG1840 AfuA ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=98.93 E-value=4.7e-09 Score=94.07 Aligned_cols=75 Identities=13% Similarity=0.042 Sum_probs=66.2
Q ss_pred hHHHHhhcCcEEEEEecccc--HHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhhc
Q 040509 27 TLSEAFGIRDVWVAVGWSSD--VLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRILL 104 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd--~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa~ 104 (226)
...+.+.+||+.+|++|... ....+.++.++++++|+||+.+.+..++|.++++ |+++|++|| +|++++|.|..
T Consensus 166 ~~~~~va~Ge~~vg~~~~~~~~~~~~~~~~~~v~iv~P~~G~~v~~~~vaiik~a~---~~e~Ak~fi-d~llS~egQ~~ 241 (299)
T COG1840 166 VVAKVVAGGEAAVGLGNLYYGAYAKDKAKGAPVEVVYPEEGTGVNPSGVALLKKAK---NPEAAKLFI-DFLLSKEGQEI 241 (299)
T ss_pred HHHHHhhcCCceEEEEeeccHHHHHhhccCCceEEEecCCCceeeeeeeeeecCCC---CHHHHHHHH-HHHcCHHHHHH
Confidence 55568889999999999994 4444556779999999999999999999999999 999999999 99999999964
Q ss_pred c
Q 040509 105 P 105 (226)
Q Consensus 105 ~ 105 (226)
.
T Consensus 242 ~ 242 (299)
T COG1840 242 L 242 (299)
T ss_pred H
Confidence 4
No 14
>PRK15046 2-aminoethylphosphonate ABC transporter substrate-binding protein; Provisional
Probab=98.87 E-value=1e-08 Score=93.31 Aligned_cols=76 Identities=13% Similarity=0.042 Sum_probs=60.6
Q ss_pred hHHHHhhcCcEEEEEeccccH-HHHHHcCCCeEEEecCC--C---ceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHH
Q 040509 27 TLSEAFGIRDVWVAVGWSSDV-LPAVKRMSNVAVVVPKS--G---ASLWADLWAIPAASRLHKTNWRASQWSISIDPSMD 100 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~-~~a~~~~~~i~~v~PkE--G---~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe 100 (226)
...+++.+|++.++.++.... ...++.+.++++++|++ | +....++++|+++++ |+++|++|| ||+++|+
T Consensus 211 ~~~~~~~~Ge~~~~~g~~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~aI~~~s~---n~~~A~~Fi-~fllS~e 286 (349)
T PRK15046 211 KLTPLVSKGEIYVANGDLQMNLAQAEHGGPNVKIFFPAKDGGERSTFALPYVIGLVKGAP---NSENGKKLI-DFLLSKE 286 (349)
T ss_pred hhhHHhhcCceEEeccHHHHHHHHHhcCCCceEEEecCCCCCCcceeeccceeEEecCCC---CHHHHHHHH-HHHhCHH
Confidence 456789999999886543222 22344578899999987 3 455678999999999 999999999 9999999
Q ss_pred hhhccc
Q 040509 101 RILLPF 106 (226)
Q Consensus 101 ~qa~~~ 106 (226)
+|+.+.
T Consensus 287 ~Q~~~a 292 (349)
T PRK15046 287 AQTKVS 292 (349)
T ss_pred HHHHHH
Confidence 999876
No 15
>TIGR00971 3a0106s03 sulfate/thiosulfate-binding protein. This model describes binding proteins functionally associated with the sulfate ABC transporter. In the model bacterium E. coli, two different members work with the same transporter; mutation analysis says each enables the uptake of both sulfate and thiosulfate. In many species, a single binding protein is found, and may be referred to in general terms as a sulfate ABC transporter sulfate-binding protein.
Probab=98.54 E-value=4.7e-07 Score=82.33 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=60.6
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHc--CCCeEEEecCCCceeeeeeEEEeC----CCCCCCCHHHHHHHHHhhCCCHH
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKR--MSNVAVVVPKSGASLWADLWAIPA----ASRLHKTNWRASQWSISIDPSMD 100 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~--~~~i~~v~PkEG~~~w~D~~~Ipk----~A~~~~n~e~A~kFI~nfll~Pe 100 (226)
+....+.+||+.+|+.|.++++..+.. +.++++++|+||.+.+.- .++.+ .++ ++++|++|+ ||+++||
T Consensus 184 ~~~~~v~~Ge~dagivy~sda~~~~~~~~~~~i~iviP~e~~~i~~~-iavv~~~~~~~~---~~e~A~~Fi-dfLlS~e 258 (315)
T TIGR00971 184 ATNTFVERGIGDVLIAWENEALLARKELGKDKFEIVTPSESILAEPT-VSVVDKVVEKKG---TKKVAEAYL-KYLYSPE 258 (315)
T ss_pred HHHHHHHcCceeEEEEEcHHHHHHHHhcCCCCeEEEECCCCcccccc-EEEEEcccCCCC---CHHHHHHHH-HHhcCHH
Confidence 345567799999999999998876553 468999999998777664 55553 346 799999999 9999999
Q ss_pred hhhccc
Q 040509 101 RILLPF 106 (226)
Q Consensus 101 ~qa~~~ 106 (226)
.|+.+.
T Consensus 259 aq~i~a 264 (315)
T TIGR00971 259 GQEIAA 264 (315)
T ss_pred HHHHHH
Confidence 999885
No 16
>PRK10752 sulfate transporter subunit; Provisional
Probab=98.45 E-value=1.1e-06 Score=80.74 Aligned_cols=74 Identities=12% Similarity=0.035 Sum_probs=58.1
Q ss_pred HHHhhcCcEEEEEeccccHHHHHHc--CCCeEEEecCCCceeeeeeEEE---eCCCCCCCCHHHHHHHHHhhCCCHHhhh
Q 040509 29 SEAFGIRDVWVAVGWSSDVLPAVKR--MSNVAVVVPKSGASLWADLWAI---PAASRLHKTNWRASQWSISIDPSMDRIL 103 (226)
Q Consensus 29 ~~~l~~GEv~va~~wsgd~~~a~~~--~~~i~~v~PkEG~~~w~D~~~I---pk~A~~~~n~e~A~kFI~nfll~Pe~qa 103 (226)
...+..|+..++++|..+++....+ +.++++|+|++|.....-...| .++++ |++.|++|| ||++|||.|.
T Consensus 197 ~~~v~~g~gdv~I~~e~~a~~~~~~~~g~~veiV~P~~g~~~~~~va~v~~~~k~~~---~~e~Ak~Fi-dfllS~eaQ~ 272 (329)
T PRK10752 197 NTFVERGIGDVLIAWENEALLAANELGKDKFEIVTPSESILAEPTVSVVDKVVDKKG---TREVAEAYL-KYLYSPEGQE 272 (329)
T ss_pred hHHHHcCeeeEEEEechHHHHHHHHhCCCCEEEEECCCCccccceeEEEEeccccCC---CHHHHHHHH-HHhcCHHHHH
Confidence 3446679999999999988776554 7899999999986444433223 46678 999999999 9999999999
Q ss_pred ccc
Q 040509 104 LPF 106 (226)
Q Consensus 104 ~~~ 106 (226)
.+.
T Consensus 273 i~a 275 (329)
T PRK10752 273 IAA 275 (329)
T ss_pred HHH
Confidence 774
No 17
>COG4134 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=98.42 E-value=5.9e-07 Score=82.69 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=82.0
Q ss_pred chhhHHHHhhcCcEEEEEeccccHHHHHHcC---CCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHH
Q 040509 24 KLYTLSEAFGIRDVWVAVGWSSDVLPAVKRM---SNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMD 100 (226)
Q Consensus 24 ~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~---~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe 100 (226)
.+.++.++|.+|+..|+..|.+.+..++..| +..++..++.|.+...+.++||+|++ +++.|..+| ||+|+||
T Consensus 244 g~Adml~lL~dG~l~l~~t~~~~~~s~~~tG~lp~s~~~~~~~~G~vgn~~f~aIPaNa~---~~A~alvl~-n~lls~E 319 (384)
T COG4134 244 GPADMLQLLNDGTLYLTLTFPDHASSAIATGDLPASARSFALEKGMVGNGHFMAIPANAN---AKAAALVLA-NFLLSPE 319 (384)
T ss_pred CHHHHHHHhcCCcEEEeecchhhhhcchhccCCchHhhhhhhccccccCcceEEecCCCC---CchHHHHHH-HHhcCHH
Confidence 4568899999999999999988888888776 46888899999999999999999999 999999999 9999999
Q ss_pred hhhccccccccCCCCCCcchhcccCCchhhhc
Q 040509 101 RILLPFKQEVIPGTSPSALETTLVKLPEELLK 132 (226)
Q Consensus 101 ~qa~~~~~e~i~~~s~~~n~aa~~~l~~el~~ 132 (226)
.|++..++.+ .+ +|+. -++.++++..+.
T Consensus 320 aQlrk~d~~v-~~-~P~~--l~pq~lpda~qe 347 (384)
T COG4134 320 AQLRKLDPAV-WG-DPSV--LDPQLLPDAQQE 347 (384)
T ss_pred HHHhhhcccc-cC-Cccc--cCcccChhhHhh
Confidence 9988876433 22 3432 234456655554
No 18
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]
Probab=98.27 E-value=3.7e-06 Score=77.03 Aligned_cols=95 Identities=15% Similarity=0.037 Sum_probs=71.7
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHc-C-CCe-EEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhh
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKR-M-SNV-AVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRIL 103 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~-~-~~i-~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa 103 (226)
+...+|..||+.|.++|+.+...-... + .+. ...+| ||..+.+...++.|+++ |+++|.+|+ +||++|+.|.
T Consensus 207 eaY~aFt~GEap~VLSYtTspay~~~~~~~~~~~a~~f~-eG~ylqiEgaa~~k~~k---npeLA~~F~-~FmlS~e~Q~ 281 (336)
T COG4143 207 EAYGAFTKGEAPLVLSYTTSPAYHVYPEKKDRYAAALFP-EGHYLQVEGAAVLKGAK---NPELADKFL-QFMLSPEFQD 281 (336)
T ss_pred HHHHHHhCCccceEEEeccCcchhcccccccccchhcCC-CCceeEEEeeeeecCCC---CHHHHHHHH-HHHhCHHHHh
Confidence 444599999999999999877654422 2 233 33555 78999999999999999 999999999 9999999999
Q ss_pred ccccccccCCCCCCcchhcccCCchhhhc
Q 040509 104 LPFKQEVIPGTSPSALETTLVKLPEELLK 132 (226)
Q Consensus 104 ~~~~~e~i~~~s~~~n~aa~~~l~~el~~ 132 (226)
.+.+ .++.| |.+.. ..||+.+..
T Consensus 282 ~ip~-~nwm~--Pa~~~---~~Lp~~f~~ 304 (336)
T COG4143 282 AIPT-TNWMY--PAVKN---VPLPAVFDA 304 (336)
T ss_pred hCCc-cceee--ecCCC---CcCCHHHHh
Confidence 8863 44444 33111 458877764
No 19
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=98.19 E-value=1e-05 Score=74.63 Aligned_cols=78 Identities=17% Similarity=-0.038 Sum_probs=61.3
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHc--CCCeEEEecCCCceeeeeeEEEe-CCCCCCCCHHHHHHHHHhhCCCHHhhh
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKR--MSNVAVVVPKSGASLWADLWAIP-AASRLHKTNWRASQWSISIDPSMDRIL 103 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~--~~~i~~v~PkEG~~~w~D~~~Ip-k~A~~~~n~e~A~kFI~nfll~Pe~qa 103 (226)
.....+.+|+..+++.|..++..+..+ ..++++++|++|..... ..+|. +++..+.|++.|++|| ||+++||.|.
T Consensus 201 a~~~~v~~Ge~Dvgi~yesda~~~~~~~~~~~~~iV~P~~~~~~~~-pvAvv~k~~~~~~~~e~AkaFi-dfL~S~eaQ~ 278 (338)
T PRK10852 201 ATTTFAERGLGDVLISFESEVNNIRKQYEAQGYEVVVPKTNILAEF-PVAWVDKNVQANGTEKAAKAYL-NYLYSPQAQT 278 (338)
T ss_pred HHHHHHHcCCccEEEEechHHHHHHHhcCCCCeEEEeCCCCceeee-eEEEEEeccccCCCHHHHHHHH-HHhcCHHHHH
Confidence 455567899999999999998766543 46789999999987666 66766 5532111799999999 9999999999
Q ss_pred ccc
Q 040509 104 LPF 106 (226)
Q Consensus 104 ~~~ 106 (226)
.+.
T Consensus 279 i~a 281 (338)
T PRK10852 279 IIT 281 (338)
T ss_pred HHH
Confidence 775
No 20
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A ....
Probab=98.08 E-value=7.1e-06 Score=69.76 Aligned_cols=77 Identities=14% Similarity=0.040 Sum_probs=64.6
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCcee-eee-eEEEeCCCCCCCCHHHHHHHHHhhCCCHHhh
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASL-WAD-LWAIPAASRLHKTNWRASQWSISIDPSMDRI 102 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~-w~D-~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~q 102 (226)
..+..+.+.+|++.++++|...+... ..+.++.++.|.++... +++ ..+|.++++ |+++|.+|+ +||++|+.|
T Consensus 147 ~~~~~~~v~~g~~d~~~~~~s~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~f~-~~L~s~~~q 221 (230)
T PF13531_consen 147 TSQVLSAVASGEADAGIVYESQAIFA-RQGDPLSYVYPPDGVNSPPIDYPIAILKNAP---HPEAARAFI-DFLLSPEGQ 221 (230)
T ss_dssp HHHHHHHHHTTSSSEEEEEHHHHHHC-TSHTTEEEEE-STTTSSSEEEEEEEEBTTCT---THHHHHHHH-HHHTSHHHH
T ss_pred hHHHHHHHHcCCCcceeeHHHHHHHh-hcCCCeEEEECCchhcCCCEEEEEEEecCCC---CHHHHHHHH-HHHCCHHHH
Confidence 35778889999999999998877543 46789999999999885 555 689999999 999999999 999999999
Q ss_pred hccc
Q 040509 103 LLPF 106 (226)
Q Consensus 103 a~~~ 106 (226)
..+.
T Consensus 222 ~~l~ 225 (230)
T PF13531_consen 222 QILA 225 (230)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 21
>PRK10677 modA molybdate transporter periplasmic protein; Provisional
Probab=97.97 E-value=2e-05 Score=69.69 Aligned_cols=73 Identities=8% Similarity=0.002 Sum_probs=60.3
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhhcc
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRILLP 105 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa~~ 105 (226)
.+..+.+.+|++.+|+.|..++.. .++.++..++|+|+...-.-.++|.++++ |+ .|++|+ ||+++||.|.-+
T Consensus 177 ~~~~~~v~~G~ad~gi~~~s~a~~--~~~~~~~~~~P~e~~~~i~~~~avlk~~~---~~-~Ak~Fi-~fl~S~eaq~i~ 249 (257)
T PRK10677 177 RGALALVERNEAPLGIVYGSDAVA--SKKVKVVGTFPEDSHKPVEYPMAIVKGHN---NA-TVKAFY-DYLKGPQAAAIF 249 (257)
T ss_pred HHHHHHHHcCCCCEEEEEeeeeec--cCCCeEEEECCcccCCcceeeEEEEcCCC---CH-HHHHHH-HHHcCHHHHHHH
Confidence 356778899999999999887653 33556667789999877777889999988 75 799999 999999999866
No 22
>PRK03537 molybdate ABC transporter periplasmic molybdate-binding protein; Provisional
Probab=97.89 E-value=3.8e-05 Score=64.71 Aligned_cols=70 Identities=16% Similarity=0.065 Sum_probs=57.8
Q ss_pred HhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 31 AFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 31 ~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
.+.+|++.+|+.|..++..+..++.++.++ +|+++...-.-.++++++ +++.|++|+ ||++++|.|.-+.
T Consensus 108 ~v~~G~adag~vy~s~~~~~~~~~~~~~~i~iP~~~~~~i~y~iav~k~-----~~~~A~~F~-~fl~s~eaq~i~~ 178 (188)
T PRK03537 108 LIENKQADIFIGYASNAPLAQREVPSLQVVDLPEPLAVGAEYGLAILKD-----ASPQAKRLA-DFLLSPKGQAILA 178 (188)
T ss_pred HHHCCCCCEEEEEecHHHHHhccCCCCeEEeCCCCcceeeeeeEEEecC-----ChHHHHHHH-HHHhCHHHHHHHH
Confidence 778999999999999877654344567755 799988887778999986 358999999 9999999999774
No 23
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed
Probab=97.74 E-value=0.00026 Score=64.72 Aligned_cols=77 Identities=16% Similarity=-0.031 Sum_probs=57.3
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecCC-C----ceeeeeeEEEeCCCCCCCCHHHHHHHHHh-hCCC
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-G----ASLWADLWAIPAASRLHKTNWRASQWSIS-IDPS 98 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~PkE-G----~~~w~D~~~Ipk~A~~~~n~e~A~kFI~n-fll~ 98 (226)
++..+.|.+|++.|.+..+.........+.++.++ +|.. | ......+++|+++++ |+++|.+|| + |+++
T Consensus 237 ~~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~i~~~s~---~~eaA~~fi-~~~l~s 312 (396)
T PRK09474 237 SIAEAAFNKGETAMTINGPWAWSNIDKSGINYGVTVLPTFNGKPSKPFVGVLSAGINAASP---NKELAKEFL-ENYLLT 312 (396)
T ss_pred hHHHHHHhcCCeeEEEcCCcchHHHHhcCCceEEEeCCCCCCCCCCceeeeeEEEEeCCCC---CHHHHHHHH-HHHhcC
Confidence 34567899999999886554444444556677776 4642 2 234556789999999 999999999 8 9999
Q ss_pred HHhhhccc
Q 040509 99 MDRILLPF 106 (226)
Q Consensus 99 Pe~qa~~~ 106 (226)
|+.|....
T Consensus 313 ~~~~~~~~ 320 (396)
T PRK09474 313 DEGLETVN 320 (396)
T ss_pred HHHHHHHh
Confidence 99988664
No 24
>PF01547 SBP_bac_1: Bacterial extracellular solute-binding protein; InterPro: IPR006059 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. In Gram-positive bacteria, which are surrounded by a single membrane and therefore have no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight family clusters [], which generally correlate with the nature of the solute bound. Family 1 includes the maltose/maltodextrin-binding proteins of Enterobacteriaceae (gene malE) [] and Streptococcus pneumoniae malX; multiple oligosaccharide binding protein of Streptococcus mutans (gene msmE); Escherichia coli glycerol-3-phosphate-binding protein; Serratia marcescens iron-binding protein (gene sfuA) and the homologous proteins (gene fbp) from Haemophilus influenzae and Neisseria; and the E. coli thiamine-binding protein (gene tbpA).; GO: 0005215 transporter activity, 0006810 transport; PDB: 3CFZ_A 2THI_A 3THI_A 4THI_A 1O7T_C 1D9Y_A 1URG_A 1URS_A 1URD_B 3OMB_A ....
Probab=97.71 E-value=0.00014 Score=62.75 Aligned_cols=75 Identities=17% Similarity=-0.000 Sum_probs=55.2
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHH---------H--H--HcCCCeEEE-ecCC--Cc--eeeeeeEEEeCCCCCCCCHH
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLP---------A--V--KRMSNVAVV-VPKS--GA--SLWADLWAIPAASRLHKTNW 86 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~---------a--~--~~~~~i~~v-~PkE--G~--~~w~D~~~Ipk~A~~~~n~e 86 (226)
..+..+.+.+|++.+...|+..... . . ....++.+. +|.. |. ....+.++|+++++ |++
T Consensus 223 ~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~I~~~sk---~~e 299 (315)
T PF01547_consen 223 WDQAQQAFASGKVAMIIDGSWYALNWMKVEPQSAFNQNSPPVKFDWGFAPFPAGPGGGPPIGGGDGIAISKNSK---NPE 299 (315)
T ss_dssp HHHHHHHHHTTSEEEEEEEHHHHHHHHHHHHHHHHHHHHHTTTTTEEEECEEBETTEETCSEEEEEEEEBTTSS---THH
T ss_pred HHHHHHHHhCCCceEEEeccccccccccccccccccccccccccccceeccCccCCCCCccccceEEEEECCCC---CHH
Confidence 3466788999999999998876211 1 1 123456665 3421 11 15888999999999 999
Q ss_pred HHHHHHHhhCCCHHhhh
Q 040509 87 RASQWSISIDPSMDRIL 103 (226)
Q Consensus 87 ~A~kFI~nfll~Pe~qa 103 (226)
+|.+|| +||++||.|.
T Consensus 300 ~A~~fl-~~l~s~e~Q~ 315 (315)
T PF01547_consen 300 AAWKFL-DFLTSPEGQK 315 (315)
T ss_dssp HHHHHH-HHHTSHHHHH
T ss_pred HHHHHH-HHhCChhhCC
Confidence 999999 9999999983
No 25
>PRK04168 molybdate ABC transporter periplasmic substrate-binding protein; Provisional
Probab=97.26 E-value=0.00075 Score=62.12 Aligned_cols=71 Identities=13% Similarity=-0.018 Sum_probs=55.0
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHcCCCeE-EEecCC--------------------------CceeeeeeEEEeCCC
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVA-VVVPKS--------------------------GASLWADLWAIPAAS 79 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~-~v~PkE--------------------------G~~~w~D~~~Ipk~A 79 (226)
+..+.+.+|++++|..|..++... .+. +.+|.+ ...-..-.++|++++
T Consensus 213 ~~~~~v~~G~aDagivy~S~a~~~-----~~~~i~lP~~~n~~~~~~~~~y~~~~~~~~~~~~~~~~~pi~y~~ai~~~s 287 (334)
T PRK04168 213 ELLSLLETGNMDYAFIYKSVAVQH-----NLKYIELPDEINLGNYKYADFYKKVSVTVTGTGKTITAKPIVYGITVPKNA 287 (334)
T ss_pred hhHHHHhcCCccEEEEEeeehhhC-----CCCeeECchhhcCCChhhhhhhhEEEEEecCCCccccCceeeeeeeeecCC
Confidence 677889999999999999987642 122 223432 122355669999999
Q ss_pred CCCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 80 RLHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 80 ~~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
+ |+++|.+|+ +|+++++.|..+.
T Consensus 288 ~---n~e~A~~Fi-~fl~S~e~q~il~ 310 (334)
T PRK04168 288 P---NREAAIEFL-KYLLSEPGGEVLE 310 (334)
T ss_pred C---CHHHHHHHH-HHHcCHHHHHHHH
Confidence 9 999999999 9999999998774
No 26
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family. Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1-3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus.
Probab=97.23 E-value=0.0021 Score=59.53 Aligned_cols=75 Identities=12% Similarity=-0.027 Sum_probs=52.5
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHc----CCCeEEE-ecC--CC----ceeeeeeEEEeCCCCCCCCHHHHHHHHHhh
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKR----MSNVAVV-VPK--SG----ASLWADLWAIPAASRLHKTNWRASQWSISI 95 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~----~~~i~~v-~Pk--EG----~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nf 95 (226)
+..+.|.+|++.+.+..+-.....+.. +.++.++ +|. +| +..+..+++|+++++ |+++|.+|| +|
T Consensus 269 ~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~v~~~s~---~~~aA~~Fi-~~ 344 (437)
T TIGR03850 269 KNQQLVLDNKALFMPNGTWVVGEMKDAPRADGFEWGMTALPAVKEGGDRYSYTFFEQMWIPAAAK---NKDLAKEFI-AF 344 (437)
T ss_pred HHHHHHHcCCeEEEeCCcchHHHhhcCCCCCCCceeeeeCCccCCCCCcccccCcceeEEECCCC---CHHHHHHHH-HH
Confidence 456789999998766443322222222 2355543 363 22 245778899999999 999999999 99
Q ss_pred CCCHHhhhcc
Q 040509 96 DPSMDRILLP 105 (226)
Q Consensus 96 ll~Pe~qa~~ 105 (226)
+.+|+.|...
T Consensus 345 l~s~e~~~~~ 354 (437)
T TIGR03850 345 LYSDEAAKIF 354 (437)
T ss_pred HhCHHHHHHH
Confidence 9999998764
No 27
>TIGR03851 chitin_NgcE carbohydrate ABC transporter, N-acetylglucosamine/diacetylchitobiose-binding protein. Members of this protein family are the substrate-binding protein, a lipid-anchored protein of Gram-positive bacteria in all examples found so far, that include NgcE of the chitin-degrader, Streptomyces olivaceoviridis, and close homologs from other species likely to share the same function. NgcE binds both N-acetylglucosamine and the chitin dimer, N,N'-diacetylchitobiose.
Probab=96.81 E-value=0.0069 Score=56.64 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=50.8
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHcC-CCeEE--E-ecC-CCc------eee---eeeEEEeCCCCCCCCHHHHHHHH
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKRM-SNVAV--V-VPK-SGA------SLW---ADLWAIPAASRLHKTNWRASQWS 92 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~~-~~i~~--v-~Pk-EG~------~~w---~D~~~Ipk~A~~~~n~e~A~kFI 92 (226)
+..+.|.+|++.|....+-......... .++++ + +|. +|. .++ -..++|+++++ |+++|.+||
T Consensus 272 ~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~~p~P~~~~~~~~~~~~~~~~~g~~~~I~~~s~---~~~aA~~fl 348 (450)
T TIGR03851 272 QSQTAWNQGKAAFYPSGSWLENEMKSQTPADFEMTGAPTPSLTASDKLPYGALHAAAGEPFIVPAKAK---NPAGGLEYL 348 (450)
T ss_pred HHHHHHHCCCcEEEEcCccHHHHHhhcCCCCcceeeeecCCCCCcccCCcccccccCCceeEEECCCC---CHHHHHHHH
Confidence 5677899999988764332222222222 22333 2 353 111 122 46799999999 999999999
Q ss_pred HhhCCCHHhhhccc
Q 040509 93 ISIDPSMDRILLPF 106 (226)
Q Consensus 93 ~nfll~Pe~qa~~~ 106 (226)
+|+.+|++|....
T Consensus 349 -~~l~s~e~~~~~~ 361 (450)
T TIGR03851 349 -RIMLSKEGAANFT 361 (450)
T ss_pred -HHHhCHHHHHHHH
Confidence 9999999998775
No 28
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.0055 Score=54.69 Aligned_cols=73 Identities=12% Similarity=-0.021 Sum_probs=62.4
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhhcc
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRILLP 105 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa~~ 105 (226)
+....+.+|+++.|..|..++.... +..+...+|.+...--.=..+|+++++ |++.|.+|+ +|+.+|+.|.-+
T Consensus 177 ~~l~~V~~G~ad~g~vy~sd~~~~~--~~~~~~~~~~~~~~Pi~y~iav~~~~~---~~~~A~~f~-~fl~s~~a~~il 249 (258)
T COG0725 177 QALAYVETGEADAGFVYVSDALLSK--KVKIVGVFPEDLHSPIVYPIAVLKNAK---NPELAKEFV-DFLLSPEAQEIL 249 (258)
T ss_pred HHHHHHHcCCCCeEEEEEEhhhccC--CceEEEEcccccCCCeEEEEEEEcCCC---CHHHHHHHH-HHHhCHHHHHHH
Confidence 6677889999999999999777654 566777788777766777899999999 999999999 999999998866
No 29
>PF02030 Lipoprotein_8: Hypothetical lipoprotein (MG045 family)
Probab=96.37 E-value=0.0028 Score=61.18 Aligned_cols=72 Identities=18% Similarity=0.082 Sum_probs=58.8
Q ss_pred cchhhHHHHhhcCcEEEEEeccccHHHHHHcC--------------CCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHH
Q 040509 23 VKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRM--------------SNVAVVVPKSGASLWADLWAIPAASRLHKTNWRA 88 (226)
Q Consensus 23 ~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~--------------~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A 88 (226)
-+++...+.|++|+...|++|+||++.|...| .+++.+-|+ -++..+|+++|.|-.+. +.+.|
T Consensus 250 ~dS~~lln~la~~~~~~aimYNGDalyA~~gGd~~~E~~~~~~~~~~nf~~vr~~-~tl~~LD~iVinK~~~e--~ed~A 326 (493)
T PF02030_consen 250 SDSNDLLNNLANGQFDGAIMYNGDALYAANGGDYFEEKDENKLPDSNNFHIVRPK-NTLSLLDFIVINKISSE--NEDKA 326 (493)
T ss_pred CChHHHHHHHhccccceEEEEccHHHHHhcCCCcccccccccCCCCCceeeeccC-CCceehhhhhhcccCHH--HHHHH
Confidence 46678999999999999999999999885332 468888884 78889998898884432 89999
Q ss_pred HHHHHhhCCC
Q 040509 89 SQWSISIDPS 98 (226)
Q Consensus 89 ~kFI~nfll~ 98 (226)
|.|| ++++-
T Consensus 327 Ye~I-~~l~~ 335 (493)
T PF02030_consen 327 YEFI-NKLAF 335 (493)
T ss_pred HHHH-HHHHH
Confidence 9999 87653
No 30
>COG1653 UgpB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=95.84 E-value=0.038 Score=49.79 Aligned_cols=98 Identities=15% Similarity=0.051 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhHhh-hh---cccchhhHHH-HhhcCcEEEEEeccccHHHHHHcC---CCeEEE-ecCC----Cc--ee
Q 040509 4 IVGAIRSIQESSTKF-WY---GVVKLYTLSE-AFGIRDVWVAVGWSSDVLPAVKRM---SNVAVV-VPKS----GA--SL 68 (226)
Q Consensus 4 ~~~~~~~~~e~l~~~-~~---~~~~~~~~~~-~l~~GEv~va~~wsgd~~~a~~~~---~~i~~v-~PkE----G~--~~ 68 (226)
.+++++..++..++. .+ ......+..+ .+.+|++.|...++.......... .++.+. +|.. +. ..
T Consensus 230 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~ 309 (433)
T COG1653 230 AVEALEFLKDLYKKGLLPKGASGYGWDDAGALAFGSGKVAMTIDGTWAIGYFKKAAGPKFDIGVAPLPAGPGGGGAAGGV 309 (433)
T ss_pred HHHHHHHHHHHHhcccccCCccccchhhhhhHHHhcCceeeEeeccchhcccccccccccceeEEeCCCCCCCCCcceee
Confidence 345555555555431 11 1222346667 599999999998876665444433 235655 3531 22 34
Q ss_pred eeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhhc
Q 040509 69 WADLWAIPAASRLHKTNWRASQWSISIDPSMDRILL 104 (226)
Q Consensus 69 w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa~ 104 (226)
....+.|+++++. ++++|.+|| +|+.+|+.|..
T Consensus 310 ~~~~~~i~~~~~~--~~~aA~~f~-~~l~s~e~q~~ 342 (433)
T COG1653 310 GGGGLGVSKKSKK--HKEAAWKFL-EFLTSPEAQAE 342 (433)
T ss_pred ccceEEeecCCcc--chHHHHHHH-HHhcCCchhhh
Confidence 4556899999882 489999999 99999999886
No 31
>PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional
Probab=95.27 E-value=0.45 Score=44.41 Aligned_cols=76 Identities=14% Similarity=0.013 Sum_probs=50.2
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHc-CCCeEEE-ecCC----C----ceeeeeeEEEeCC--CCCCCCHHHHHHHHHh
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKR-MSNVAVV-VPKS----G----ASLWADLWAIPAA--SRLHKTNWRASQWSIS 94 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~-~~~i~~v-~PkE----G----~~~w~D~~~Ipk~--A~~~~n~e~A~kFI~n 94 (226)
+..+.|.+|++.|.+.++......+.. +.++.+. +|.. | +.....++.+++. ++ |+++|.+|| +
T Consensus 255 ~~~~~f~~Gk~a~~~~gsw~~~~~~~~~~~~~~v~~~P~~~~~~g~~~~~~~gg~~~~~~~~~~~~---~~eaA~~fi-~ 330 (438)
T PRK10974 255 ESTEKFYNGDCAITTASSGSLANIRKYAKFNYGVGMMPYDADVKGAPQNAIIGGASLWVMQGKDKE---TYKGVAKFL-D 330 (438)
T ss_pred hHhhHhhcCcceEEecChHHHHHHHhcCCceeeEEeeccCCCcCCCCCCCCCCCceEEEECCCCHH---HHHHHHHHH-H
Confidence 456789999999888877665444332 2344443 3531 2 2234455656653 23 679999999 9
Q ss_pred hCCCHHhhhccc
Q 040509 95 IDPSMDRILLPF 106 (226)
Q Consensus 95 fll~Pe~qa~~~ 106 (226)
|+.+|+.|.+..
T Consensus 331 fl~s~e~~~~~~ 342 (438)
T PRK10974 331 FLAKPENAAEWH 342 (438)
T ss_pred HHcCHHHHHHHH
Confidence 999999998765
No 32
>TIGR03730 tungstate_WtpA tungstate ABC transporter binding protein WtpA. Members of this protein family are tungstate (and, more weakly, molybdate) binding proteins of tungstate(/molybdate) ABC transporters, as first characterized in Pyrococcus furiosus. Model seed members and cutoffs, pending experimental evidence for more distant homologs, were chosen such that this model identifies select archaeal proteins, excluding weaker archaeal and all bacterial homologs. Note that this family is homologous to molybdate transporters, and that at least one other family of tungstate transporter binding protein, TupA, also exists.
Probab=92.50 E-value=0.2 Score=45.03 Aligned_cols=66 Identities=12% Similarity=0.032 Sum_probs=45.5
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHH------------------HcCCCeEEEecC-----CCceeeeeeEEEeCCCCCC
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAV------------------KRMSNVAVVVPK-----SGASLWADLWAIPAASRLH 82 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~------------------~~~~~i~~v~Pk-----EG~~~w~D~~~Ipk~A~~~ 82 (226)
.+....+.+|++++|..|..++.... +.-..++++.+- .|.+ -.=..+|+++++
T Consensus 185 ~~~~~~v~sG~aD~g~vY~S~A~~~~~~~~~lP~~~n~~~~~~~~~y~~v~~~~~~~~~~~~~~p-i~y~~ai~~~~~-- 261 (273)
T TIGR03730 185 VELLSLLESGEIDYAFIYKSVAVQHGLKYIELPDEINLGDYSYADFYKKVSVELGGGKKTITGKP-IVYGITVPKNAP-- 261 (273)
T ss_pred HhHHHHHHCCCCcEEEEEeeecccCCCceEECChhccCCChhhhcccceEEEEecCCCceEecCC-EEEEEeccCCCC--
Confidence 36678899999999999999866420 000234444321 1222 235678999999
Q ss_pred CCHHHHHHHHHhhC
Q 040509 83 KTNWRASQWSISID 96 (226)
Q Consensus 83 ~n~e~A~kFI~nfl 96 (226)
|+++|.+|+ +|+
T Consensus 262 -~~~~a~~F~-~fl 273 (273)
T TIGR03730 262 -NREEAIEFL-KFL 273 (273)
T ss_pred -CHHHHHHHH-hhC
Confidence 999999999 996
No 33
>COG1613 Sbp ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=91.97 E-value=0.89 Score=41.99 Aligned_cols=69 Identities=14% Similarity=0.016 Sum_probs=48.7
Q ss_pred hhcCcEEEEEeccccHHHHH--HcCCCeEEEecC-----CCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhhc
Q 040509 32 FGIRDVWVAVGWSSDVLPAV--KRMSNVAVVVPK-----SGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRILL 104 (226)
Q Consensus 32 l~~GEv~va~~wsgd~~~a~--~~~~~i~~v~Pk-----EG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa~ 104 (226)
.+.|-=++=++|...++.+. ..+.++++|+|. |..+.=+|.-+=-|| +.+.|+.|+ +|+.+|+.|..
T Consensus 217 ~qrgiGDVLi~wENEA~la~~e~g~~~feiV~Ps~si~aEpPVAVVd~~vdkkg-----tr~vAeAyl-~yLys~~gQ~i 290 (348)
T COG1613 217 VQRGIGDVLIAWENEALLALNELGGDKFEIVTPSVSILAEPPVAVVDKNVDKKG-----TRKVAEAYL-KYLYSPEGQEI 290 (348)
T ss_pred HhcCcccEEEEechHHHHHHHHhCCCCccEECCceeeeecCCeEEEeeeccccc-----cHHHHHHHH-HHhcChHHHHH
Confidence 33466667778999998883 446899999996 233333333333333 479999999 99999999987
Q ss_pred cc
Q 040509 105 PF 106 (226)
Q Consensus 105 ~~ 106 (226)
.+
T Consensus 291 ~A 292 (348)
T COG1613 291 AA 292 (348)
T ss_pred HH
Confidence 65
No 34
>COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=80.28 E-value=2.8 Score=37.95 Aligned_cols=89 Identities=20% Similarity=0.140 Sum_probs=55.0
Q ss_pred HHHHHhHhhhh--cccchh---hHHHHhh--cCcEEEEEeccccHHHHH--HcCCCeEEEecC-----CCceeeeeeEEE
Q 040509 10 SIQESSTKFWY--GVVKLY---TLSEAFG--IRDVWVAVGWSSDVLPAV--KRMSNVAVVVPK-----SGASLWADLWAI 75 (226)
Q Consensus 10 ~~~e~l~~~~~--~~~~~~---~~~~~l~--~GEv~va~~wsgd~~~a~--~~~~~i~~v~Pk-----EG~~~w~D~~~I 75 (226)
+.+|.++++.. .+|+.. ....-.. -|+|.+. +...+.-.+ -.....+.|+|+ |-.+.|+|..+=
T Consensus 184 k~~ef~~k~~~Nv~VFDTGGRgATTtFveRglGDVLIt--FEsE~~~irkqyg~d~~evVvP~~siLAEFPVa~Vdkvv~ 261 (341)
T COG4150 184 KTEEFMTKFLKNVEVFDTGGRGATTTFVERGLGDVLIT--FESEVNNIRKQYGADKFEVVVPKTSILAEFPVAWVDKVVD 261 (341)
T ss_pred HHHHHHHHHhcCCceeccCCccccchhhhhccccEEEE--eehhhccHHHHhCcccceEeccchhhhhhcchhHHhhhhh
Confidence 45566666544 355543 1122222 3555554 444443333 334679999996 445668887665
Q ss_pred eCCCCCCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 76 PAASRLHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 76 pk~A~~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
-.|+ .+.|..++ ||+.+|+.|--++
T Consensus 262 k~Gt-----~~~AkaYl-~~LYsp~~Q~i~a 286 (341)
T COG4150 262 KNGT-----EKAAKAYL-NYLYSPQAQTIIA 286 (341)
T ss_pred hccc-----HHHHHHHH-HHhcCcHHHHHHH
Confidence 5553 59999999 9999999988664
No 35
>COG2182 MalE Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]
Probab=73.87 E-value=17 Score=34.87 Aligned_cols=99 Identities=14% Similarity=0.072 Sum_probs=63.9
Q ss_pred ccHHHHHHHHHHHhHhhhh-cccchhhHHHHhhcCcEEEEEe--ccccHHHHHHcCCCeEEE-ecCCC------ceeeee
Q 040509 2 KGIVGAIRSIQESSTKFWY-GVVKLYTLSEAFGIRDVWVAVG--WSSDVLPAVKRMSNVAVV-VPKSG------ASLWAD 71 (226)
Q Consensus 2 ~~~~~~~~~~~e~l~~~~~-~~~~~~~~~~~l~~GEv~va~~--wsgd~~~a~~~~~~i~~v-~PkEG------~~~w~D 71 (226)
.|.+++...+++..++..- ...+.+-..+++..|++.+... |+-+... ..|.++.+. +|+=. ..+-+=
T Consensus 227 ~G~i~g~~~~~~~~~~g~~~~~~~~~~~~slF~~G~aa~~i~GPW~~~~~~--~~g~n~GvaplP~~~~g~~~~pf~Gv~ 304 (420)
T COG2182 227 AGAIEGANFLKSWYKKGLIPEDVAGDFAQSLFTEGKAAAIINGPWSISAYK--DAGINYGVAPLPTLNNGKKPKPFSGVK 304 (420)
T ss_pred ccchHHHHHHHHHHHcCCCCcccccHHHHHHHhcCCceEEecCCCccchhh--hcCcccceeecCCCCCCCCcCCcccce
Confidence 4566777777777776222 1223334678999999655443 4444443 334444433 34322 233455
Q ss_pred eEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 72 LWAIPAASRLHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 72 ~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
.|+|...++ |++.|.+|+ .|+..++.|....
T Consensus 305 ~~~Vsa~sk---n~~~A~~f~-~~~t~~~~~~~~~ 335 (420)
T COG2182 305 GYVVSAASK---NKEAAAKFV-KYFTNPKNQKLLY 335 (420)
T ss_pred EEEecCCCC---cHHHHHHHH-HHhhhHHHHHHHH
Confidence 788999999 999999999 9999999988755
No 36
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=60.26 E-value=29 Score=31.01 Aligned_cols=78 Identities=8% Similarity=-0.024 Sum_probs=55.3
Q ss_pred chhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhh
Q 040509 24 KLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRIL 103 (226)
Q Consensus 24 ~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa 103 (226)
...+....|.+|+++.++.|..-+..+..+...=.+++-.... -+.+.+++-+.-. |++..++++ +-+.+|+++.
T Consensus 183 ~~~~~~~al~~g~vDaa~i~~~~a~~a~~~~~~~~l~~e~~~~-~~~~~~~v~~~~~---~~~~~~~l~-~a~~s~~v~~ 257 (271)
T PRK11063 183 EAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKDS-PYVNLIVAREDNK---DAENVKKFV-QAYQSDEVYE 257 (271)
T ss_pred cHHHHHHhcccccccEEEEChHHHHHcCCCCCCCeeEECCCCC-CeEEEEEECCccc---CCHHHHHHH-HHHcCHHHHH
Confidence 4457778899999999999987777664322111233322222 3557777777766 999999999 9999999988
Q ss_pred ccc
Q 040509 104 LPF 106 (226)
Q Consensus 104 ~~~ 106 (226)
.+-
T Consensus 258 ~i~ 260 (271)
T PRK11063 258 AAN 260 (271)
T ss_pred HHH
Confidence 663
No 37
>TIGR00363 lipoprotein, YaeC family. This family of putative lipoproteins contains a consensus site for lipoprotein signal sequence cleavage. Included in this family is the E. coli hypothetical protein yaeC. About half of the proteins between the noise and trusted cutoffs contain the consensus lipoprotein signature and may belong to this family.
Probab=56.94 E-value=20 Score=31.85 Aligned_cols=79 Identities=10% Similarity=-0.011 Sum_probs=54.3
Q ss_pred cchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhh
Q 040509 23 VKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRI 102 (226)
Q Consensus 23 ~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~q 102 (226)
++..+....|.+|++++++.|..-+..+......=.....+...+ +.+.+++.++-. +.+..++++ .-+-+|+++
T Consensus 169 l~~~~~~~al~~g~vDaa~v~~~~~~~agl~~~~~~i~~e~~~~~-~~n~l~~r~~~~---~~~~~~~lv-~~~~s~~v~ 243 (258)
T TIGR00363 169 LETSQLPRALDDPKVDLAVINTTYAGQVGLNPQDDGVFVEDKDSP-YVNIIVSREDNK---DAENVKDFI-QSYQSEEVY 243 (258)
T ss_pred cCHHHHHHHhhcccccEEEEChHHHHHcCCCcCcCceeecCCCCC-eeEEEEEcCCcc---CCHHHHHHH-HHHcCHHHH
Confidence 344577788999999999999987776633211111223211222 447777777655 889999999 999999998
Q ss_pred hccc
Q 040509 103 LLPF 106 (226)
Q Consensus 103 a~~~ 106 (226)
..+-
T Consensus 244 ~~i~ 247 (258)
T TIGR00363 244 QAAQ 247 (258)
T ss_pred HHHH
Confidence 7663
No 38
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=52.79 E-value=31 Score=28.38 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=31.9
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEe
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVV 61 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~ 61 (226)
.+..+.|.+|++.++++.......++.+|.+++.+.
T Consensus 32 ~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~i~ 67 (216)
T PF09084_consen 32 GDVLEALASGKADIAVAGPDAVLFARAKGADIKIIA 67 (216)
T ss_dssp HHHHHHHHTTSHSEEEEECHHHHHHHHTTSTEEEEE
T ss_pred hHHHHHHhcCCceEEeccchHHHHHHhcCCeeEEEE
Confidence 477899999999999999888888889999988775
No 39
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.
Probab=45.54 E-value=78 Score=24.50 Aligned_cols=67 Identities=7% Similarity=-0.058 Sum_probs=47.1
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcC-CCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCC
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRM-SNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPS 98 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~-~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~ 98 (226)
.+..+++.+|+++.++.+...+.....+. ..+.++.+. .......+++.+..+ +++...+|- +++.+
T Consensus 136 ~~~~~~l~~g~~d~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~---~~~l~~~~~-~~l~~ 203 (218)
T cd00134 136 AEALAALENGRADAVIVDEIALAALLKKHPPELKIVGPS--IDLEPLGFGVAVGKD---NKELLDAVN-KALKE 203 (218)
T ss_pred HHHHHHHHcCCccEEEeccHHHHHHHHhcCCCcEEeccc--cCCCccceEEEEcCC---CHHHHHHHH-HHHHH
Confidence 46788999999999999988777665544 566655442 123455566777777 778888887 77763
No 40
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=38.33 E-value=99 Score=23.77 Aligned_cols=65 Identities=11% Similarity=-0.063 Sum_probs=39.8
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcC--CCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHH
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRM--SNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWS 92 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~--~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI 92 (226)
..+...+|.+|++.+++.+.........++ ..+.++ +........-.+++.++.+. ..+...++|
T Consensus 136 ~~~~~~~l~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l 202 (219)
T smart00062 136 QAEALAALKAGRADAAVADAPALAALVKQHGLPELKIV-GDPLDTPEGYAFAVRKGDPE--LLDKINKAL 202 (219)
T ss_pred HHHHHHHhhcCcccEEEeccHHHHHHHHhcCCCceeec-cCCCCCCcceEEEEECCCHH--HHHHHHHHH
Confidence 346778999999999999988766555444 344443 33333324555666666431 345555555
No 41
>PF15056 NRN1: Neuritin protein family
Probab=34.62 E-value=18 Score=27.49 Aligned_cols=15 Identities=27% Similarity=-0.086 Sum_probs=13.2
Q ss_pred HHHHHHhhcccchhh
Q 040509 169 RWLKFLRFYEKRKMI 183 (226)
Q Consensus 169 ~~iW~~i~~~~~~~~ 183 (226)
..+|..|++|+|+|=
T Consensus 58 a~iWEsLrqESrk~~ 72 (89)
T PF15056_consen 58 AAIWESLRQESRKMQ 72 (89)
T ss_pred HHHHHHHHHHHHcCC
Confidence 678999999999974
No 42
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional
Probab=34.48 E-value=96 Score=27.34 Aligned_cols=69 Identities=13% Similarity=0.018 Sum_probs=41.8
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCC-CCCCCCHHHHHHHHHhhCCC
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA-SRLHKTNWRASQWSISIDPS 98 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~-A~~~~n~e~A~kFI~nfll~ 98 (226)
.+..+.|.+|+++.+..|..-...+..++ ...+....++.....+.++.... .. +|++...+|+ .-+.+
T Consensus 166 ~~~~~al~~G~vDa~~~~ep~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~v~~~l-~a~~~ 235 (314)
T PRK11553 166 ADARAAFQQGNVDAWAIWDPYYSAALLQG-GVRVLKDGTDLNQTGSFYLAARPYAE--KNGAFIQQVL-ATLTE 235 (314)
T ss_pred HHHHHHHHcCCCCEEEEcCcHHHHHHhcC-CcEEeecCcccCcCceEEEEcHHHHH--HCHHHHHHHH-HHHHH
Confidence 36678899999999999987666555443 34455443332222233333332 12 3899999998 54444
No 43
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein. A subset of this model in which nearly all members exhibit genomic context with elements of phosphonate metabolism, particularly the C-P lyase system has been built (TIGR03431) as an equivalog. Nevertheless, there are members of this subfamily (TIGR01098) which show up sporadically on a phylogenetic tree that also show phosphonate context and are most likely competent to transport phosphonates.
Probab=33.90 E-value=1.5e+02 Score=24.89 Aligned_cols=53 Identities=21% Similarity=-0.005 Sum_probs=36.6
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCC----CeEEEecCCCceeeeeeEEEeCCCC
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMS----NVAVVVPKSGASLWADLWAIPAASR 80 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~----~i~~v~PkEG~~~w~D~~~Ipk~A~ 80 (226)
.+..+.+.+|++++++.|......+.++++ .++.+...+... ...+++.++-+
T Consensus 184 ~~~~~al~~G~~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 240 (254)
T TIGR01098 184 DASALAVANGKVDAATNNSSAIGRLKKRGPSDMKKVRVIWKSPLIP--NDPIAVRKDLP 240 (254)
T ss_pred HHHHHHHHcCCCCeEEecHHHHHHHHHhCccchhheEEEEecCCCC--CCCEEEECCCC
Confidence 466789999999999999877766655553 567776544322 34677777633
No 44
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=32.47 E-value=79 Score=29.02 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=44.4
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCce-eeeeeEEEeCCCCCCCCHHHHHHHHHhhCC
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGAS-LWADLWAIPAASRLHKTNWRASQWSISIDP 97 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~-~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll 97 (226)
..+....|.+|+|+.+..|..-...+..++ ..+.++-.++.+ ...|.++....-- ++||+...+|+ .-..
T Consensus 142 ~~d~~aAl~~G~VDAa~~~eP~~s~~~~~~-g~~~l~~~~~~~~~~~~~lv~~~~~l-~~~pe~v~~~~-~a~~ 212 (328)
T TIGR03427 142 DADIVAAFITKDVTAVVTWNPQLSEIKAQP-GANEVFDSSQIPGEILDLMVVNTQTL-KANPNLGKALT-GAWY 212 (328)
T ss_pred hHHHHHHHhcCCCcEEEEcCchHHHHHhCC-CcEEecccccCCCcceEEEEECHHHH-HHCHHHHHHHH-HHHH
Confidence 346778999999999999998877776542 223333222221 2346666655322 24899999998 5333
No 45
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=31.35 E-value=98 Score=27.07 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=43.5
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceee----eeeEEEeCCCCCCCCHHHHHHHHHhhCCCH
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLW----ADLWAIPAASRLHKTNWRASQWSISIDPSM 99 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w----~D~~~Ipk~A~~~~n~e~A~kFI~nfll~P 99 (226)
..+..+.|.+|++..+..|......+...|..+. ... ....| .|.+++.++-- ++||+.+.+|+ .-+.+.
T Consensus 136 ~~~~~~al~~G~vDa~~~~~p~~~~~~~~g~~~~--~~~-~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~-~a~~~a 209 (300)
T TIGR01729 136 PPQIVAAWQRGDIDAAYVWPPALSELLKSGKVIS--DSE-QVGAWGAPTFDGWVVRKDFA-EKNPEFVAAFT-KVLADA 209 (300)
T ss_pred cHHHHHHHHcCCcCEEEEecHHHHHHHhcCcEEe--cch-hccccCCCceeEEEECHHHH-HHCHHHHHHHH-HHHHHH
Confidence 3467789999999999999887777666663221 111 11123 35555544310 13899999998 665553
No 46
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family. Members of this family are substrate-binding periplasmic proteins of ABC transporters. This subfamily includes SsuA, a member of a transporter operon needed to obtain sulfur from aliphatic sulfonates. Related proteins outside the scope of this model include taurine (NH2-CH2-CH2-S03H) binding proteins, the probable sulfate ester binding protein AtsR, and the probable aromatic sulfonate binding protein AsfC. All these families make sulfur available when Cys and sulfate levels are low. Please note that phylogenetic analysis by neighbor-joining suggests that a number of sequences belonging to this family have been excluded because of scoring lower than taurine-binding proteins.
Probab=31.26 E-value=94 Score=26.25 Aligned_cols=70 Identities=10% Similarity=-0.031 Sum_probs=41.4
Q ss_pred chhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCce-ee-eeeEEEeCCCCCCCCHHHHHHHHHhhC
Q 040509 24 KLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGAS-LW-ADLWAIPAASRLHKTNWRASQWSISID 96 (226)
Q Consensus 24 ~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~-~w-~D~~~Ipk~A~~~~n~e~A~kFI~nfl 96 (226)
...+..+++.+|++.++..|..-...+..++ ..+.++..++.. .+ .+.++..++-- ++||+.+.+|+ .=+
T Consensus 136 ~~~~~~~al~~g~vda~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~-~a~ 207 (288)
T TIGR01728 136 GPSDARAAFAAGQVDAWAIWEPWGSALVEEG-GARVLANGEGIGLPGQPGFLVVRREFA-EAHPEQVQRVL-KVL 207 (288)
T ss_pred CcHHHHHHHHCCCCCEEEeccchHhHHhhcc-CCEEEEcCCccCCCCcceEEEECHHHH-HHCHHHHHHHH-HHH
Confidence 3346778999999999999987766655443 233444222211 11 34444443311 23899999888 433
No 47
>COG4521 TauA ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=30.97 E-value=68 Score=29.28 Aligned_cols=59 Identities=15% Similarity=0.048 Sum_probs=46.3
Q ss_pred cccchh-hHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCC
Q 040509 21 GVVKLY-TLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 80 (226)
Q Consensus 21 ~~~~~~-~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~ 80 (226)
|.|++. +....|++|++.+|..-|.....+..++-||+.++- -+.+.-...+++-+|+.
T Consensus 62 RkFdSG~~vv~AlASGdvqiG~iGSsplaaAaSr~vpie~f~~-~~~ig~sEALVvr~gsg 121 (334)
T COG4521 62 RKFDSGASIVRALASGDVQIGNIGSSPLAAAASRQVPIEVFLL-ASQIGNSEALVVRKGSG 121 (334)
T ss_pred hhcCchhHHHHHHhcCCccccccCCchhhHHhhcCCceEEeeh-hhhcCccceeeeecCCC
Confidence 467765 778899999999999988888888888888888764 35566677777777554
No 48
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=30.42 E-value=1.6e+02 Score=26.12 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=51.3
Q ss_pred hhhHHHHhhc-CcEEEEEeccccHHHHHHcCCCeEEEecC-CCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhh
Q 040509 25 LYTLSEAFGI-RDVWVAVGWSSDVLPAVKRMSNVAVVVPK-SGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRI 102 (226)
Q Consensus 25 ~~~~~~~l~~-GEv~va~~wsgd~~~a~~~~~~i~~v~Pk-EG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~q 102 (226)
+......+.+ -+++.-++|..-+. .++++.-+++. .-..+|-|.=++++.-+ | ..|..|+ +|+.+-|.|
T Consensus 172 SgaArkaf~~~~~aDawItW~dWa~----snpdig~~v~~~~d~vIyRd~nv~~~~~a---~-~ea~~F~-dyl~S~EAq 242 (252)
T COG4588 172 SGAARKAFENQPDADAWITWADWAK----SNPDIGDAVEIEKDYVIYRDFNVALAKDA---N-KEARDFA-DYLQSDEAQ 242 (252)
T ss_pred CchHHHHHhcCCCCceEEEecchhh----hCCchhceeecccceEEeeecceeecCCC---C-HHHHHHH-HHHhhHHHH
Confidence 4456677777 67778888876332 24555555554 46678999888888666 4 5689999 999999988
Q ss_pred hcc
Q 040509 103 LLP 105 (226)
Q Consensus 103 a~~ 105 (226)
.-+
T Consensus 243 ~if 245 (252)
T COG4588 243 KIF 245 (252)
T ss_pred HHH
Confidence 754
No 49
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=28.56 E-value=58 Score=26.68 Aligned_cols=65 Identities=12% Similarity=0.077 Sum_probs=43.5
Q ss_pred hHHHHhhcCcEEEEEeccc--cHHHHHHcCCCeEEEecC-CCc-eeeeeeEEEeCCCCCCCCHHHHHHHH
Q 040509 27 TLSEAFGIRDVWVAVGWSS--DVLPAVKRMSNVAVVVPK-SGA-SLWADLWAIPAASRLHKTNWRASQWS 92 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsg--d~~~a~~~~~~i~~v~Pk-EG~-~~w~D~~~Ipk~A~~~~n~e~A~kFI 92 (226)
+..+.|.+|++..+..|.. ..+.+...+.++.+.... .|. .+-.+.++.....- ++||+.+.+|+
T Consensus 131 ~~~~al~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pe~~~~f~ 199 (216)
T PF09084_consen 131 ELAQALLSGQVDAAILWYPPWEPYEIASKGKKLRVLELSDYGPPNYPVSVLVARDEFL-EKNPEAVKAFL 199 (216)
T ss_dssp HHHHHHHTTSSSEEEEEEECTCHHHHHHCCSCEEEEEGGGCCGGCS-SEEEEEEHHHH-HHSHHHHHHHH
T ss_pred hhhhhhhcCCCCEEEEccCChHHHHHHHcCCceeeeeccccCcccccceEEEEchHHH-HHCHHHHHHHH
Confidence 5556899999998884444 456666778788777654 454 45555565555321 24899999999
No 50
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=26.55 E-value=1.7e+02 Score=25.39 Aligned_cols=77 Identities=4% Similarity=-0.106 Sum_probs=45.7
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcC-----CCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHH
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRM-----SNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMD 100 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~-----~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe 100 (226)
.+..+.|.+|++++++.|...+....+++ .+++.....+... ...++++++-+. +..+.-.+++.++.-+|+
T Consensus 178 ~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~v~~~l~~~~~~~~ 254 (288)
T TIGR03431 178 EAAILAVANGTVDAATTNDENLDRMIRKGQPDAMEDLRIIWKSPLIP--NGPIVYRKDLPA-DLKAKIRKAFLNYHKTDK 254 (288)
T ss_pred HHHHHHHHcCCCCeEeccHHHHHHHHHcCCCCchhheEEEEEcCCCC--CCcEEEeCCCCH-HHHHHHHHHHHhcCCCcH
Confidence 46778899999999999988777666543 2344443221211 245788887430 134444445525666676
Q ss_pred hhhcc
Q 040509 101 RILLP 105 (226)
Q Consensus 101 ~qa~~ 105 (226)
.....
T Consensus 255 ~~~~~ 259 (288)
T TIGR03431 255 ACFEK 259 (288)
T ss_pred HHHHh
Confidence 65533
No 51
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=25.09 E-value=1.3e+02 Score=26.22 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=26.1
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV 60 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v 60 (226)
+..+.|.+|++++++.....+..+..+|.+++.+
T Consensus 39 ~~~~al~~G~iD~~~~~~~~~~~a~~~g~~~~~v 72 (300)
T TIGR01729 39 DISTALASGNVPIGVIGSSPLAAAASRGVPIELF 72 (300)
T ss_pred HHHHHHHcCCCCEeccCCCHHHHHHHCCCCeEEE
Confidence 6779999999999987656666666778777654
No 52
>COG2998 TupB ABC-type tungstate transport system, permease component [Coenzyme metabolism]
Probab=24.05 E-value=95 Score=28.00 Aligned_cols=50 Identities=8% Similarity=-0.124 Sum_probs=33.4
Q ss_pred CCeEEEecCCCceeeeeeEEEe--CCCCCCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 55 SNVAVVVPKSGASLWADLWAIP--AASRLHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 55 ~~i~~v~PkEG~~~w~D~~~Ip--k~A~~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
+.+.+++-.+-..+.+-+..+. +..| .-|-.+|.+|| +|+++++.|-.+.
T Consensus 208 ~~L~iv~~gd~~L~N~Ysvi~vNP~r~~-~vny~~A~kfi-~w~~s~~gq~~Ia 259 (280)
T COG2998 208 PTLVIVLEGDPSLFNPYSVIAVNPKRVK-GVNYTAATKFI-EWLMSEKGQNLIA 259 (280)
T ss_pred cceEEEecCCccccCceeEEEEchhcCC-CcCchHHHHHH-HHHhhHHHHHHHh
Confidence 5677777544445555554443 5444 13577999999 9999999987654
No 53
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A.
Probab=23.03 E-value=4.2e+02 Score=22.20 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=37.7
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcC--CCeEEEecCCCceeeeeeEEEeCCCC
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRM--SNVAVVVPKSGASLWADLWAIPAASR 80 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~--~~i~~v~PkEG~~~w~D~~~Ipk~A~ 80 (226)
+.+..+.+.+|++.++.+=......+.++. .++.-..+..|...+--.+.++++++
T Consensus 39 ~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~~~ivv~~ds~ 96 (243)
T PF12974_consen 39 YAEFIEALRSGEIDLAFMGPLPYVQARQRAGVEPLATPVGPDGSPSYRSVIVVRADSP 96 (243)
T ss_dssp HHHHHHHHHTTS-SEEE--HHHHHHHHHHSSEEEEEEEEETTT-SCEEEEEEEETTSS
T ss_pred HHHHHHHHHcCCccEEEECcHHHHHHhhcCcEEEEEEecccCCCcceeEEEEEECCCC
Confidence 357789999999999998777777776553 24444444467777777888888876
No 54
>COG5514 Uncharacterized conserved protein [Function unknown]
Probab=22.45 E-value=79 Score=27.04 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=33.4
Q ss_pred cCcEEEEEeccccHHHHHHcC---CCeEEEecCCCceeeeeeEEEeCCC
Q 040509 34 IRDVWVAVGWSSDVLPAVKRM---SNVAVVVPKSGASLWADLWAIPAAS 79 (226)
Q Consensus 34 ~GEv~va~~wsgd~~~a~~~~---~~i~~v~PkEG~~~w~D~~~Ipk~A 79 (226)
+.+..+++.|...+++-...+ +.+.|-+-..-..+-++++|||++-
T Consensus 79 s~Q~Lv~~~Yh~~vfr~~dn~~fHDQvGywiwdkknn~i~~sfcIPRgv 127 (203)
T COG5514 79 SPQLLVGLRYHSHVFRPGDNITFHDQVGYWIWDKKNNLIMQSFCIPRGV 127 (203)
T ss_pred CcceeEEEeeeeeccccccCceeeccceEEEEecCCCeEEEeeeccceE
Confidence 457788999988887754433 5677776555666778999999974
No 55
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family. Members of this family are substrate-binding periplasmic proteins of ABC transporters. This subfamily includes SsuA, a member of a transporter operon needed to obtain sulfur from aliphatic sulfonates. Related proteins outside the scope of this model include taurine (NH2-CH2-CH2-S03H) binding proteins, the probable sulfate ester binding protein AtsR, and the probable aromatic sulfonate binding protein AsfC. All these families make sulfur available when Cys and sulfate levels are low. Please note that phylogenetic analysis by neighbor-joining suggests that a number of sequences belonging to this family have been excluded because of scoring lower than taurine-binding proteins.
Probab=20.67 E-value=1.9e+02 Score=24.29 Aligned_cols=35 Identities=17% Similarity=0.015 Sum_probs=25.5
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV 60 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v 60 (226)
.+..+.|.+|++.++.........+..+|.++..+
T Consensus 40 ~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~i 74 (288)
T TIGR01728 40 PPALEALGAGSLDFGYIGPGPALFAYAAGADIKAV 74 (288)
T ss_pred cHHHHHHhcCCccccccCCcHHHHHHhcCCCEEEE
Confidence 46788999999999976555555566666666655
Done!