Query 040509
Match_columns 226
No_of_seqs 210 out of 1470
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 14:37:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gl0_A LMO0810 protein; struct 99.9 2.4E-26 8.2E-31 203.0 11.6 140 22-177 191-330 (333)
2 4eqb_A Spermidine/putrescine A 99.9 3.9E-23 1.3E-27 181.6 12.4 156 7-178 171-328 (330)
3 3ttm_A Polyamine transport pro 99.9 3.3E-22 1.1E-26 176.1 13.6 154 8-177 184-345 (346)
4 3ttn_A Polyamine transport pro 99.9 2.2E-21 7.4E-26 169.9 13.8 153 8-176 180-340 (340)
5 1pot_A POTD, spermidine/putres 99.8 6.8E-20 2.3E-24 160.3 11.9 152 9-177 170-323 (325)
6 1a99_A POTF, putrescine-bindin 99.7 2.5E-16 8.4E-21 138.4 13.0 152 10-177 183-342 (344)
7 2v84_A Spermidine/putrescine A 99.7 2.9E-16 9.8E-21 138.9 10.2 133 23-177 207-342 (343)
8 4euo_A ABC transporter, substr 99.5 4.1E-14 1.4E-18 123.7 11.3 100 26-135 183-282 (320)
9 4i1d_A ABC transporter substra 99.5 1.2E-13 4E-18 120.3 11.1 101 24-134 186-288 (324)
10 3pu5_A Extracellular solute-bi 99.5 4.1E-13 1.4E-17 117.3 13.1 131 26-180 196-328 (333)
11 3rpw_A ABC transporter; struct 99.4 3.7E-13 1.3E-17 119.2 8.8 101 24-134 221-322 (365)
12 4edp_A ABC transporter, substr 99.3 2.7E-11 9.1E-16 105.2 11.1 98 25-132 219-316 (351)
13 3c9h_A ABC transporter, substr 99.2 5.5E-11 1.9E-15 105.3 8.6 78 25-106 216-294 (355)
14 3cg1_A UPF0100 protein PF0080; 99.1 8.1E-11 2.8E-15 102.1 4.9 78 25-106 190-289 (296)
15 2qry_A Thiamine-binding peripl 99.0 9.4E-10 3.2E-14 96.4 8.7 77 26-106 201-279 (330)
16 3e13_X Putative iron-uptake AB 98.9 2E-09 6.7E-14 92.6 8.2 76 27-106 181-267 (322)
17 1xvx_A YFUA; periplasmic iron 98.9 5.3E-09 1.8E-13 90.2 8.6 76 26-105 179-261 (312)
18 1q35_A Iron binding protein FB 98.8 6.1E-09 2.1E-13 90.0 8.4 76 27-106 180-263 (320)
19 1sbp_A Sulfate-binding protein 98.8 2.8E-09 9.5E-14 91.8 5.6 74 28-106 177-256 (310)
20 2pt1_A Iron transport protein; 98.8 9.8E-09 3.4E-13 89.4 7.8 76 27-106 197-283 (334)
21 1y9u_A Putative iron binding p 98.8 2E-08 6.8E-13 86.9 9.4 76 27-106 181-271 (323)
22 1nnf_A Iron-utilization peripl 98.8 1.3E-08 4.4E-13 87.5 8.0 77 26-106 176-259 (309)
23 2voz_A FUTA2, periplasmic iron 98.8 1.2E-08 4.2E-13 89.0 7.9 76 27-106 207-295 (346)
24 4hw8_A Bacterial extracellular 98.7 2.6E-07 9E-12 83.1 15.5 98 5-106 229-334 (420)
25 2gha_A Maltose ABC transporter 98.7 2.3E-07 7.9E-12 82.4 14.4 80 24-106 210-296 (382)
26 2zyo_A Solute-binding protein; 98.7 6.7E-07 2.3E-11 79.6 16.4 78 25-106 230-313 (397)
27 4dxb_A RG13, maltose-binding p 98.7 1.1E-07 3.9E-12 91.6 11.8 98 5-106 189-294 (637)
28 3r26_A Molybdate-binding perip 98.6 4E-08 1.4E-12 83.2 6.3 72 26-106 157-230 (237)
29 3osq_A Maltose-binding peripla 98.6 6.2E-07 2.1E-11 87.6 15.4 98 5-106 471-576 (661)
30 3osr_A Maltose-binding peripla 98.6 1.9E-07 6.6E-12 91.0 11.6 98 5-106 225-330 (653)
31 2gh9_A Maltose/maltodextrin-bi 98.6 1.7E-06 5.7E-11 76.9 16.2 78 25-106 215-300 (386)
32 3uor_A ABC transporter sugar b 98.6 9.1E-07 3.1E-11 80.9 14.8 76 27-106 249-334 (458)
33 3oai_A Maltose-binding peripla 98.6 1.2E-06 4.1E-11 80.2 15.5 98 5-106 189-294 (507)
34 3ob4_A Conglutin, maltose ABC 98.6 9.3E-07 3.2E-11 82.6 14.9 98 5-106 189-294 (500)
35 3k01_A Acarbose/maltose bindin 98.6 6.8E-07 2.3E-11 80.0 12.7 78 25-106 242-329 (412)
36 3cfx_A UPF0100 protein MA_0280 98.5 7E-08 2.4E-12 83.8 5.8 71 26-105 192-288 (296)
37 3py7_A Maltose-binding peripla 98.5 1.9E-06 6.4E-11 80.8 15.6 99 4-106 189-295 (523)
38 3mq9_A Bone marrow stromal ant 98.5 3.8E-06 1.3E-10 77.9 17.3 98 5-106 203-308 (471)
39 3n94_A Fusion protein of malto 98.5 2.7E-06 9.1E-11 78.3 16.1 98 5-106 191-296 (475)
40 3cij_A UPF0100 protein AF_0094 98.5 6.9E-08 2.4E-12 83.7 5.2 72 26-105 191-287 (295)
41 1urs_A Maltose-binding protein 98.5 4.8E-07 1.6E-11 80.9 10.4 98 5-106 213-319 (402)
42 3iot_A Maltose-binding protein 98.5 1.9E-06 6.6E-11 78.7 14.2 98 5-106 189-294 (449)
43 1elj_A Maltodextrin-binding pr 98.5 4.3E-07 1.5E-11 80.7 9.1 98 5-106 190-298 (381)
44 3quf_A Extracellular solute-bi 98.5 8.2E-07 2.8E-11 79.4 11.0 80 25-106 247-334 (414)
45 3mp6_A MBP, SGF29, maltose-bin 98.4 2.8E-06 9.6E-11 79.7 14.4 98 5-106 190-295 (522)
46 3o3u_N Maltose-binding peripla 98.4 3.5E-06 1.2E-10 78.3 14.7 98 5-106 189-294 (581)
47 3h4z_A Maltose-binding peripla 98.4 3.4E-06 1.2E-10 80.5 14.9 98 5-106 189-294 (568)
48 3h3g_A Fusion protein of malto 98.4 4.5E-06 1.5E-10 78.5 15.5 98 5-106 191-296 (539)
49 1y4c_A Maltose binding protein 98.4 3.5E-06 1.2E-10 79.3 14.4 99 5-106 189-294 (494)
50 4hs7_A Bacterial extracellular 98.4 1.2E-06 4.1E-11 78.7 10.5 98 5-106 229-334 (420)
51 2hxw_A Major antigenic peptide 98.4 2.5E-07 8.6E-12 76.5 4.8 70 27-106 154-225 (237)
52 1mh3_A Maltose binding-A1 home 98.4 3.7E-06 1.3E-10 75.6 12.3 99 5-106 189-294 (421)
53 3csg_A MBP, maltose-binding pr 98.4 3E-06 1E-10 77.6 11.8 99 5-106 187-292 (461)
54 3thi_A Protein (thiaminase I); 98.3 1.5E-06 5.1E-11 76.4 9.3 75 28-106 216-295 (371)
55 2xz3_A Maltose ABC transporter 98.3 3.3E-06 1.1E-10 78.1 12.0 80 24-106 210-295 (463)
56 1atg_A MODA, periplasmic molyb 98.3 2.9E-07 9.9E-12 74.2 4.3 77 26-106 147-223 (231)
57 1hsj_A Fusion protein consisti 98.3 3.8E-06 1.3E-10 77.4 12.1 99 5-106 189-294 (487)
58 3f5f_A Maltose-binding peripla 98.3 4.7E-06 1.6E-10 80.5 12.8 98 5-106 189-294 (658)
59 2vgq_A Maltose-binding peripla 98.3 4.5E-06 1.5E-10 77.2 12.1 99 5-106 204-309 (477)
60 2xd3_A MALX, maltose/maltodext 98.3 2E-06 6.8E-11 77.3 9.1 77 26-106 248-331 (416)
61 1r6z_P Chimera of maltose-bind 98.3 6.9E-06 2.4E-10 76.5 12.4 99 5-106 190-295 (509)
62 2b3f_A Glucose-binding protein 98.2 1.4E-05 4.8E-10 71.4 13.3 77 26-106 225-309 (400)
63 3oo8_A ABC transporter binding 98.2 2.8E-05 9.6E-10 69.4 14.3 77 26-106 246-332 (415)
64 4exk_A Maltose-binding peripla 98.2 2.1E-05 7.3E-10 73.5 13.1 79 24-106 213-298 (487)
65 4h1g_A Maltose binding protein 98.1 1.8E-05 6E-10 77.7 12.6 98 5-106 190-295 (715)
66 2zxt_A Maltose-binding peripla 98.1 7.9E-06 2.7E-10 75.6 9.3 99 5-106 189-294 (465)
67 4b3n_A Maltose-binding peripla 98.1 2E-05 7E-10 75.4 12.4 79 24-106 223-308 (602)
68 3gzg_A Molybdate-binding perip 98.1 2.8E-06 9.7E-11 73.1 5.8 72 26-106 173-246 (253)
69 2heu_A Sugar ABC transporter, 98.1 1.3E-05 4.5E-10 71.6 9.6 77 26-106 240-325 (401)
70 3cfz_A UPF0100 protein MJ1186; 98.0 2.7E-06 9.3E-11 73.6 4.2 69 26-105 189-284 (292)
71 3i3v_A Probable secreted solut 98.0 3.8E-06 1.3E-10 74.8 5.1 78 25-106 230-320 (405)
72 2nvu_B Maltose binding protein 98.0 7.8E-06 2.7E-10 80.9 7.7 78 25-106 214-298 (805)
73 2w7y_A FCSSBP, probable sugar 97.9 1.6E-05 5.4E-10 71.6 7.1 77 25-106 262-342 (430)
74 2z8f_A Galacto-N-biose/lacto-N 97.9 4.9E-05 1.7E-09 68.1 9.9 74 27-104 234-320 (412)
75 3dm0_A Maltose-binding peripla 97.7 0.00025 8.6E-09 67.3 11.6 99 5-106 189-294 (694)
76 4g68_A ABC transporter; transp 97.6 0.00019 6.5E-09 65.3 8.5 78 25-106 284-376 (456)
77 3omb_A Extracellular solute-bi 97.5 0.00027 9.3E-09 65.7 8.5 69 32-105 297-382 (535)
78 1eu8_A Trehalose/maltose bindi 97.4 0.0011 3.6E-08 59.0 10.7 76 27-106 240-325 (409)
79 3a09_A ALGQ1; sugar binding pr 97.4 0.0011 3.7E-08 59.9 10.8 77 25-105 252-345 (490)
80 4aq4_A SN-glycerol-3-phosphate 97.4 0.0029 1E-07 55.7 13.1 98 5-106 212-322 (419)
81 2uvj_A TOGB, ABC type periplas 97.3 0.00073 2.5E-08 60.0 8.5 73 29-105 233-316 (408)
82 3k6v_A Solute-binding protein 97.1 0.00047 1.6E-08 62.6 4.9 71 27-106 231-327 (354)
83 3vlv_A ALGQ1; sugar binding pr 96.6 0.0061 2.1E-07 56.2 8.7 34 68-105 312-345 (502)
84 4gqo_A LMO0859 protein; virule 96.2 0.0074 2.5E-07 53.7 6.5 78 22-103 248-343 (433)
85 3muq_A Uncharacterized conserv 92.7 0.11 3.9E-06 44.3 4.7 52 53-105 180-232 (237)
86 3lr1_A Tungstate ABC transport 85.3 1.1 3.9E-05 38.0 5.3 52 53-105 181-233 (236)
87 3kn3_A Putative periplasmic pr 76.1 3.3 0.00011 35.4 5.0 53 53-106 185-238 (242)
88 4gd5_A Phosphate ABC transport 75.8 1.4 4.7E-05 37.2 2.5 73 27-105 191-270 (279)
89 3cvg_A Putative metal binding 65.1 6.4 0.00022 33.4 4.4 47 56-106 218-269 (294)
90 3ksx_A Nitrate transport prote 40.7 36 0.0012 28.5 5.1 71 24-97 166-236 (324)
91 4h1x_A PBP 2, phosphate-bindin 40.0 13 0.00044 31.7 2.1 73 27-105 56-134 (265)
92 2x26_A Periplasmic aliphatic s 38.6 36 0.0012 28.0 4.7 69 25-98 141-211 (308)
93 3qsl_A Putative exported prote 38.2 35 0.0012 28.3 4.6 67 27-96 178-253 (346)
94 4esw_A Pyrimidine biosynthesis 35.1 27 0.00093 29.7 3.4 36 26-61 49-84 (342)
95 3del_B Arginine binding protei 34.1 76 0.0026 24.4 5.7 67 25-97 147-215 (242)
96 1ii5_A SLR1257 protein; membra 33.2 1.2E+02 0.0041 22.9 6.7 67 25-97 144-212 (233)
97 3qax_A Probable ABC transporte 32.5 83 0.0028 24.5 5.8 63 25-92 168-232 (268)
98 3hn0_A Nitrate transport prote 29.0 87 0.003 26.0 5.5 66 25-92 132-203 (283)
99 3un6_A Hypothetical protein sa 28.1 79 0.0027 26.6 5.2 38 25-62 92-129 (341)
100 1twy_A ABC transporter, peripl 28.1 95 0.0032 24.5 5.4 68 27-105 189-268 (290)
101 2yjp_A Putative ABC transporte 26.9 1.4E+02 0.0049 24.1 6.5 66 25-97 194-259 (291)
102 3n5l_A Binding protein compone 25.6 1.1E+02 0.0039 25.8 5.7 57 24-80 45-103 (310)
103 3p7i_A PHND, subunit of alkylp 25.0 92 0.0032 26.7 5.1 57 24-80 55-113 (321)
104 3k4u_A Binding component of AB 24.7 1.5E+02 0.0052 22.8 6.0 64 25-96 145-210 (245)
105 2de3_A Dibenzothiophene desulf 24.4 49 0.0017 28.9 3.2 64 28-97 210-277 (365)
106 1qp6_A Protein (alpha2D); de n 24.3 1E+02 0.0035 18.0 3.5 27 163-192 5-31 (35)
107 3ix1_A N-formyl-4-amino-5-amin 24.0 60 0.0021 26.6 3.6 70 27-98 143-216 (302)
108 3n5l_A Binding protein compone 23.7 1.5E+02 0.0052 24.9 6.2 72 27-105 159-238 (310)
109 3kbr_A Cyclohexadienyl dehydra 23.1 1.3E+02 0.0043 23.1 5.2 53 25-77 155-207 (239)
110 3un6_A Hypothetical protein sa 22.9 1E+02 0.0034 26.0 4.9 73 24-98 190-263 (341)
111 3uif_A Sulfonate ABC transport 22.3 1.2E+02 0.0042 25.5 5.3 34 27-60 59-92 (348)
112 4i62_A Amino acid ABC transpor 21.7 1.4E+02 0.0048 23.1 5.3 62 26-92 181-243 (269)
113 1pc3_A Phosphate-binding prote 21.4 2.4E+02 0.0083 24.3 7.2 34 67-104 286-322 (350)
114 3ix1_A N-formyl-4-amino-5-amin 21.3 82 0.0028 25.8 3.9 34 27-60 46-79 (302)
115 3ksx_A Nitrate transport prote 20.1 1.5E+02 0.0052 24.5 5.4 37 25-61 68-104 (324)
No 1
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=99.93 E-value=2.4e-26 Score=203.03 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=126.3
Q ss_pred ccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHh
Q 040509 22 VVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDR 101 (226)
Q Consensus 22 ~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~ 101 (226)
.+.+++..+.+.+||++|+++|+++...++.++.++.+++|+||+.+|+|+++|||+|+ |+++|++|| |||++||+
T Consensus 191 ~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~p~eG~~~~~~~~~I~k~a~---n~e~A~~fi-~fllspe~ 266 (333)
T 4gl0_A 191 AIVGDEIKLLMADNEAGVAVTFSGEAAEMLSENEDLEYVIPKDGSNLWFDNMVIPKTAK---NVDGAHKFI-NFMLKPEN 266 (333)
T ss_dssp EEESTTHHHHTSCC-CCEEEEEHHHHHHHHHHCTTEEEECCSSCEEEEEEEEECBTTCS---CHHHHHHHH-HHHHSHHH
T ss_pred eecchhhhhhhhccchheehhhhHHHHHHHhhccccccccCCCCCccccceEEEEcCCC---CHHHHHHHH-HHhcCHHH
Confidence 45567888999999999999999999999999999999999999999999999999999 999999999 99999999
Q ss_pred hhccccccccCCCCCCcchhcccCCchhhhcCCCCCCCCcccCCCcHHHhhhceecCCCCHHHHHHHHHHHHHhhc
Q 040509 102 ILLPFKQEVIPGTSPSALETTLVKLPEELLKGKPSLGTDLIAGVPPAEILARCEFLEPLSEATFDVLRWLKFLRFY 177 (226)
Q Consensus 102 qa~~~~~e~i~~~s~~~n~aa~~~l~~el~~~~p~~~p~l~~i~P~~e~l~r~e~~~~l~~~~~~~y~~iW~~i~~ 177 (226)
|+.++ +.++| .++|..+...++++++++ | .++|+.+.+++++++.+++++..+.|+++|++||-
T Consensus 267 q~~~~--~~~gy--~~~n~~a~~~l~~~~~~~-----~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~K~ 330 (333)
T 4gl0_A 267 AAINA--EYVGY--ATPNAKAVELLPKEISSD-----E---RFYPDMDELNNLEVYDNLGKRMLSYYNELFLEFKM 330 (333)
T ss_dssp HHHHH--HHHCC--BCCBHHHHHHSCHHHHTC-----T---TTSCCGGGGTTEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHhCC--CCccHHHHHhCCHHHHhC-----c---ccCCCHHHHhhCeehhcCCHHHHHHHHHHHHHHHh
Confidence 99997 56677 335778888899999873 4 47999999999999999999999999999999985
No 2
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=99.89 E-value=3.9e-23 Score=181.58 Aligned_cols=156 Identities=17% Similarity=0.125 Sum_probs=134.2
Q ss_pred HHHHHHHHhHhhhh--cccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCC
Q 040509 7 AIRSIQESSTKFWY--GVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKT 84 (226)
Q Consensus 7 ~~~~~~e~l~~~~~--~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n 84 (226)
.++++.+.++.+.. ..+.+++..+.|.+|+++|+++|++++..++.++.++.+++|++|+.+|.|+++||++++ |
T Consensus 171 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~---~ 247 (330)
T 4eqb_A 171 QLEETVDKLYKLTPNIKAIVADEMKGYMIQNNVAIGVTFSGEASQMLEKNENLRYVVPTEASNLWFDNMVIPKTVK---N 247 (330)
T ss_dssp HHHHHHHHHHTTGGGEEEEESTTHHHHHHTTCCSEEEEEHHHHHHHHHHCTTEEEECCTTCEEEEEEEEBCBTTCS---C
T ss_pred HHHHHHHHHHHHhhHhheeCcHHHHHHHhcCCEEEEEechHHHHHHHhhCCCeEEEeCCCccceEEEEEEEECCCC---C
Confidence 34555555555544 245566889999999999999999999999989999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhCCCHHhhhccccccccCCCCCCcchhcccCCchhhhcCCCCCCCCcccCCCcHHHhhhceecCCCCHHH
Q 040509 85 NWRASQWSISIDPSMDRILLPFKQEVIPGTSPSALETTLVKLPEELLKGKPSLGTDLIAGVPPAEILARCEFLEPLSEAT 164 (226)
Q Consensus 85 ~e~A~kFI~nfll~Pe~qa~~~~~e~i~~~s~~~n~aa~~~l~~el~~~~p~~~p~l~~i~P~~e~l~r~e~~~~l~~~~ 164 (226)
+++|++|| +|+++||+|+.++ +..++. +++..+...+++++++ +| .+||+.+.+++++++++++++.
T Consensus 248 ~~~A~~fi-~~l~s~e~~~~~~--~~~g~~--p~~~~a~~~l~~~~~~-----~~---~~~p~~~~~~~~~~~~~~~~~~ 314 (330)
T 4eqb_A 248 QDSAYAFI-NFMLKPENALQNA--EYVGYS--TPNLPAKELLPEETKE-----DK---AFYPDVETMKHLEVYEKFDHKW 314 (330)
T ss_dssp HHHHHHHH-HHHHSHHHHHHHH--HHHCCB--CSBHHHHHTSCHHHHT-----CT---TTSCCHHHHHTEECCCCCCHHH
T ss_pred HHHHHHHH-HHhcCHHHHHHHH--HhhCCC--ChhHHHHHhCCHHHhh-----Cc---ccCCCHHHHhhceEecCCCHHH
Confidence 99999999 9999999999987 444663 3577777789999987 34 4799999999999999999888
Q ss_pred HHHHHHHHHHhhcc
Q 040509 165 FDVLRWLKFLRFYE 178 (226)
Q Consensus 165 ~~~y~~iW~~i~~~ 178 (226)
.+.|+++|++++..
T Consensus 315 ~~~~~~~w~~~k~~ 328 (330)
T 4eqb_A 315 TGKYSDLFLQFKMY 328 (330)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999874
No 3
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A
Probab=99.88 E-value=3.3e-22 Score=176.09 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=129.2
Q ss_pred HHHHHHHhHhhhh--cccchhhHHHHhhcCcEEEEEeccccHHHHHH------cCCCeEEEecCCCceeeeeeEEEeCCC
Q 040509 8 IRSIQESSTKFWY--GVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVK------RMSNVAVVVPKSGASLWADLWAIPAAS 79 (226)
Q Consensus 8 ~~~~~e~l~~~~~--~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~------~~~~i~~v~PkEG~~~w~D~~~Ipk~A 79 (226)
++++.+.++++.. ..+.+++..+.|.+|+++|+++|+++...++. .+.++.+++|++|+.+|.|+++||+++
T Consensus 184 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~I~~~s 263 (346)
T 3ttm_A 184 LKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDA 263 (346)
T ss_dssp HHHHHHHHHHHGGGCCEECSSTHHHHHHHTSCSEEEEEHHHHHHHHHHHHHHTSSCCCEEECCTTCEEEEEEEEECBTTC
T ss_pred HHHHHHHHHHHhHhhheeCChhHHHHHhcCCeEEEEeccHHHHHHHHhhhhcccCCceEEEEcCCCceEEEEEEEEECCC
Confidence 3444444544433 24555678899999999999999999988764 378999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhhCCCHHhhhccccccccCCCCCCcchhcccCCchhhhcCCCCCCCCcccCCCcHHHhhhceecCC
Q 040509 80 RLHKTNWRASQWSISIDPSMDRILLPFKQEVIPGTSPSALETTLVKLPEELLKGKPSLGTDLIAGVPPAEILARCEFLEP 159 (226)
Q Consensus 80 ~~~~n~e~A~kFI~nfll~Pe~qa~~~~~e~i~~~s~~~n~aa~~~l~~el~~~~p~~~p~l~~i~P~~e~l~r~e~~~~ 159 (226)
+ |+++|++|| +|+++||+|+.++ +..++ .+++..+...+++++++ +| .++|+.+.+++++++.+
T Consensus 264 ~---~~~~A~~fi-~fl~s~e~q~~~~--~~~g~--~p~~~~a~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~ 327 (346)
T 3ttm_A 264 E---NTEGALAFV-NFLMKPEIMAEIT--DVVQF--PNGNAAATPLVSEAIRN-----DP---GIYPSEEVMKKLYTFPD 327 (346)
T ss_dssp S---CSHHHHHHH-HHHTSHHHHHHHH--HHHCC--CBSBTTTGGGSCHHHHT-----CT---TTSCCHHHHTTEEECCC
T ss_pred C---CHHHHHHHH-HHhcCHHHHHHHH--HhhCC--CCccHHHHhhCCHHHhh-----CC---CcCCCHHHHhhCeeecC
Confidence 9 999999999 9999999999987 44455 33577777889999987 34 47999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 040509 160 LSEATFDVLRWLKFLRFY 177 (226)
Q Consensus 160 l~~~~~~~y~~iW~~i~~ 177 (226)
++++..+.|+++|++++.
T Consensus 328 ~~~~~~~~~~~~w~~~~~ 345 (346)
T 3ttm_A 328 LPAKTQRAMTRSWTKIKS 345 (346)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999889999999999985
No 4
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A*
Probab=99.86 E-value=2.2e-21 Score=169.85 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=127.5
Q ss_pred HHHHHHHhHhhhh--cccchhhHHHHhhcCcEEEEEeccccHHHHHH------cCCCeEEEecCCCceeeeeeEEEeCCC
Q 040509 8 IRSIQESSTKFWY--GVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVK------RMSNVAVVVPKSGASLWADLWAIPAAS 79 (226)
Q Consensus 8 ~~~~~e~l~~~~~--~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~------~~~~i~~v~PkEG~~~w~D~~~Ipk~A 79 (226)
++++.+.++++.. ..+.+++..+.|.+|+++|+++|+++...++. .+.++.+++|++|+.+|.++++|++++
T Consensus 180 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s 259 (340)
T 3ttn_A 180 YKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADA 259 (340)
T ss_dssp HHHHHHHHHHHGGGCCEECSSHHHHHHHHTSCSEEEEEHHHHHHHHHHHHHHTSCCCEEEECCTTCCEEEEEEEECBTTC
T ss_pred HHHHHHHHHHHhHHhheeCCchHHHHHhcCCeEEEEeccHHHHHHHHhhhhccCCCceEEEeCCCccceeEEEEEEECCC
Confidence 3444444444433 24455678899999999999999999987754 378999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhhCCCHHhhhccccccccCCCCCCcchhcccCCchhhhcCCCCCCCCcccCCCcHHHhhhceecCC
Q 040509 80 RLHKTNWRASQWSISIDPSMDRILLPFKQEVIPGTSPSALETTLVKLPEELLKGKPSLGTDLIAGVPPAEILARCEFLEP 159 (226)
Q Consensus 80 ~~~~n~e~A~kFI~nfll~Pe~qa~~~~~e~i~~~s~~~n~aa~~~l~~el~~~~p~~~p~l~~i~P~~e~l~r~e~~~~ 159 (226)
+ |+++|++|| +|+++||+|+.++ +..++ .+++..+...+++++++ +| .++|+.+.+++++++.+
T Consensus 260 ~---~~~~A~~fi-~~l~s~e~q~~~~--~~~g~--~p~~~~a~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~ 323 (340)
T 3ttn_A 260 K---AADNAYAFI-DYLLRPEVIAKVS--DYVGY--ANAIPGARPLMDKSVSD-----SE---EVYPPQAVLDKLYVSAV 323 (340)
T ss_dssp S---CHHHHHHHH-HHHTSHHHHHHHH--HHHCC--EESCGGGGGGSCHHHHT-----BT---TTSCCHHHHTTCEECCC
T ss_pred C---CHHHHHHHH-HHhcCHHHHHHHH--HhcCC--CCccHHHHhhCCHHHHh-----CC---CCCCCHHHHhhcccccC
Confidence 9 999999999 9999999999987 44455 33467777789999987 34 47999999999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 040509 160 LSEATFDVLRWLKFLRF 176 (226)
Q Consensus 160 l~~~~~~~y~~iW~~i~ 176 (226)
++++..+.|+++|++++
T Consensus 324 ~~~~~~~~~~~~w~~~k 340 (340)
T 3ttn_A 324 LPAKVLRLQTRTWTRIK 340 (340)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 99989999999999985
No 5
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1*
Probab=99.82 E-value=6.8e-20 Score=160.28 Aligned_cols=152 Identities=17% Similarity=0.124 Sum_probs=124.5
Q ss_pred HHHHHHhHhhhh--cccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHH
Q 040509 9 RSIQESSTKFWY--GVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNW 86 (226)
Q Consensus 9 ~~~~e~l~~~~~--~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e 86 (226)
.++.+.++++.. ..+.+++..+.|.+|+++|+++|+++...+..++.++++++|++|+.+|.++++|+++++ |++
T Consensus 170 ~~a~~~l~~l~~~~~~~~~~~~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~---~~~ 246 (325)
T 1pot_A 170 EAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAK---NKE 246 (325)
T ss_dssp HHHHHHHHHTGGGEEEECSSCTHHHHHTTSCSEEEEEHHHHHHHHTTSCCEEEECCTTCCEEEEEEEBCBTTCT---THH
T ss_pred HHHHHHHHHHHHHHhhcCCchHhHHHhcCCEEEEEeecHHHHHHhhcCCCeEEEECCCcceEEEEEEEEECCCC---CHH
Confidence 344444444433 234455778899999999999999999888777889999999999999999999999999 999
Q ss_pred HHHHHHHhhCCCHHhhhccccccccCCCCCCcchhcccCCchhhhcCCCCCCCCcccCCCcHHHhhhceecCCCCHHHHH
Q 040509 87 RASQWSISIDPSMDRILLPFKQEVIPGTSPSALETTLVKLPEELLKGKPSLGTDLIAGVPPAEILARCEFLEPLSEATFD 166 (226)
Q Consensus 87 ~A~kFI~nfll~Pe~qa~~~~~e~i~~~s~~~n~aa~~~l~~el~~~~p~~~p~l~~i~P~~e~l~r~e~~~~l~~~~~~ 166 (226)
+|++|| +|+++||.|+.+. +..++. | ++..+...+++++++ +| .++|+.+.++++.++.++++. .+
T Consensus 247 ~A~~fi-~~l~s~e~q~~~~--~~~g~~-p-~~~~~~~~l~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~-~~ 312 (325)
T 1pot_A 247 GALKLI-NFLLRPDVAKQVA--ETIGYP-T-PNLAARKLLSPEVAN-----DK---TLYPDAETIKNGEWQNDVGAA-SS 312 (325)
T ss_dssp HHHHHH-HHHHSHHHHHHHH--HHHCCC-C-SBSTTTTTSCHHHHT-----CT---TTSCCHHHHHHSEECCCCGGG-HH
T ss_pred HHHHHH-HHHhCHHHHHHHH--HhhCCC-C-ccHHHHHhcCHHHHh-----Cc---ccCCCHHHHhhcccccCCCHH-HH
Confidence 999999 9999999999886 444553 3 466666778888876 34 358899999999999999876 79
Q ss_pred HHHHHHHHhhc
Q 040509 167 VLRWLKFLRFY 177 (226)
Q Consensus 167 ~y~~iW~~i~~ 177 (226)
+|+++|++|+.
T Consensus 313 ~~~~~w~~~~~ 323 (325)
T 1pot_A 313 IYEEYYQKLKA 323 (325)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999999986
No 6
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1
Probab=99.68 E-value=2.5e-16 Score=138.38 Aligned_cols=152 Identities=20% Similarity=0.161 Sum_probs=119.7
Q ss_pred HHHHHhHhhhh--cccchhhHHHHhhcCcEEEEEeccccHHHHHH------cCCCeEEEecCCCceeeeeeEEEeCCCCC
Q 040509 10 SIQESSTKFWY--GVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVK------RMSNVAVVVPKSGASLWADLWAIPAASRL 81 (226)
Q Consensus 10 ~~~e~l~~~~~--~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~------~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~ 81 (226)
++.+.++++.. ..+..++..+.|.+|++.|++.|++++..... .+.++.+++|++|+..|.++++|+++++
T Consensus 183 ~a~~~l~~l~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~- 261 (344)
T 1a99_A 183 PATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAK- 261 (344)
T ss_dssp HHHHHHHHHGGGCCEECSSTHHHHHHTTSCSEEEEEHHHHHHHHHHHHHHTCSCCEEEECCTTCEEEEEEEEECBTTCS-
T ss_pred HHHHHHHHhccceeEecChhHHHHhhcCCEEEEEEccHHHHHHHHhccccCCCCceEEEECCCCceeEEEeeEEECCCC-
Confidence 34444444433 23444577889999999999999998877654 3668999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhCCCHHhhhccccccccCCCCCCcchhcccCCchhhhcCCCCCCCCcccCCCcHHHhhhceecCCCC
Q 040509 82 HKTNWRASQWSISIDPSMDRILLPFKQEVIPGTSPSALETTLVKLPEELLKGKPSLGTDLIAGVPPAEILARCEFLEPLS 161 (226)
Q Consensus 82 ~~n~e~A~kFI~nfll~Pe~qa~~~~~e~i~~~s~~~n~aa~~~l~~el~~~~p~~~p~l~~i~P~~e~l~r~e~~~~l~ 161 (226)
|+++|.+|| +|+++||.|..+. +..++. | ++..+...+++++++ +| .++|..+.++++.+..+++
T Consensus 262 --~~~~A~~fi-~~l~s~e~q~~~~--~~~g~~-p-~~~~~~~~~~~~~~~-----~p---~~~~~~~~~~~~~~~~~~~ 326 (344)
T 1a99_A 262 --NKDEAYQFL-NYLLRPDVVAHIS--DHVFYA-N-ANKAATPLVSAEVRE-----NP---GIYPPADVRAKLFTLKVQD 326 (344)
T ss_dssp --CHHHHHHHH-HHHHSHHHHHHHH--HHHCCE-E-SBTTTGGGSCHHHHT-----CT---TTSCCHHHHTTEECCCCCC
T ss_pred --CHHHHHHHH-HHHcCHHHHHHHH--HhhCCC-C-cchHHHhhCCHHHhh-----Cc---cCCCCHHHHhhceecccCC
Confidence 999999999 9999999999876 333443 3 355555567888876 34 2578889999999888888
Q ss_pred HHHHHHHHHHHHHhhc
Q 040509 162 EATFDVLRWLKFLRFY 177 (226)
Q Consensus 162 ~~~~~~y~~iW~~i~~ 177 (226)
++..+.+.++|++++.
T Consensus 327 ~~~~~~~~~~~~~~~~ 342 (344)
T 1a99_A 327 PKIDRVRTRAWTKVKS 342 (344)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7788999999999875
No 7
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=99.66 E-value=2.9e-16 Score=138.89 Aligned_cols=133 Identities=11% Similarity=0.078 Sum_probs=107.7
Q ss_pred cchhhHHHHhhcCcEEEEEeccccHHH--HHHcCCCeEEEecC-CCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCH
Q 040509 23 VKLYTLSEAFGIRDVWVAVGWSSDVLP--AVKRMSNVAVVVPK-SGASLWADLWAIPAASRLHKTNWRASQWSISIDPSM 99 (226)
Q Consensus 23 ~~~~~~~~~l~~GEv~va~~wsgd~~~--a~~~~~~i~~v~Pk-EG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~P 99 (226)
++..+..+.|.+|++.|++.|+++... .+..+.++.+++|+ +|+..|.++++|+++++ |+++|.+|| +|+++|
T Consensus 207 ~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~I~~~s~---~~~aA~~Fi-~~l~s~ 282 (343)
T 2v84_A 207 FDSDGYAKSFASGDFVVAHGFAEAFFAETPEAMHEHIDFFIPQDVASPVYVDSFCIPKGAR---NRDLAHAFI-NFFLEP 282 (343)
T ss_dssp ECSSSHHHHHHHTSCSEEEECHHHHHHHSCGGGGGGEEEECCTTTTCEEEEEEEBEETTCS---CHHHHHHHH-HHHTSH
T ss_pred eCchHHHHHHhcCCEEEEEEecHHHHHHHHHhcCCCeeEEeeCccCcceeeeeeEEECCCC---CHHHHHHHH-HHHcCH
Confidence 455577889999999999999998877 66667899999999 99999999999999999 999999999 999999
Q ss_pred HhhhccccccccCCCCCCcchhcccCCchhhhcCCCCCCCCcccCCCcHHHhhhceecCCCCHHHHHHHHHHHHHhhc
Q 040509 100 DRILLPFKQEVIPGTSPSALETTLVKLPEELLKGKPSLGTDLIAGVPPAEILARCEFLEPLSEATFDVLRWLKFLRFY 177 (226)
Q Consensus 100 e~qa~~~~~e~i~~~s~~~n~aa~~~l~~el~~~~p~~~p~l~~i~P~~e~l~r~e~~~~l~~~~~~~y~~iW~~i~~ 177 (226)
|.|..++ +..++. |.++..+...++ .+| . | +.+.++++.++.++++. .+.|+++|++|+.
T Consensus 283 e~q~~~~--~~~g~~-P~~~~~a~~~~~---------~~~---~-~-~~~~~~~~~~~~~~~~~-~~~~~~~w~~~~~ 342 (343)
T 2v84_A 283 AHYAEFL--DTFGFP-STIHREAAAYQK---------KTP---Y-Y-SEHDLERGTLKTDVGAA-IEHYNAHWNAVRF 342 (343)
T ss_dssp HHHHHHH--HHHTCC-CSSBTTGGGGCC---------SCC---S-S-CGGGGSSSEECCCCGGG-HHHHHHHHHHHHH
T ss_pred HHHHHHH--HhhCCC-CCcchhHHHhcc---------ccc---c-C-CHHHHhhceeccCCCHH-HHHHHHHHHHHhc
Confidence 9999876 333442 303444444343 245 4 6 67899999999998764 7999999999985
No 8
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=99.53 E-value=4.1e-14 Score=123.65 Aligned_cols=100 Identities=10% Similarity=0.042 Sum_probs=87.2
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhhcc
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRILLP 105 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa~~ 105 (226)
.+..+.+.+|++.|+++|++++..++.++.++++++ +|+..|.++++|+++++ |+++|++|| +|+++||+|+.+
T Consensus 183 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~i~k~s~---~~e~A~~fi-~fl~s~e~q~~~ 256 (320)
T 4euo_A 183 AQSQQLIASAEAPFGSVWNGRMTALEQSGVKVETSW--AQNITAADSLVVPKGTK---NKDAAMKFI-ALATSAQAQADM 256 (320)
T ss_dssp HHHHHHHHTTSSCEEEEEHHHHHHHHHTTCCCEEEE--EEEEEEEEEEECBTTCS---CHHHHHHHH-HHHTSHHHHHHH
T ss_pred chHHHHHHcCCEEEEEeecHHHHHHHhCCCCeEEEe--cCceeecceEEEECCCC---CHHHHHHHH-HHHhCHHHHHHH
Confidence 477899999999999999999998888899999998 79999999999999999 999999999 999999999988
Q ss_pred ccccccCCCCCCcchhcccCCchhhhcCCC
Q 040509 106 FKQEVIPGTSPSALETTLVKLPEELLKGKP 135 (226)
Q Consensus 106 ~~~e~i~~~s~~~n~aa~~~l~~el~~~~p 135 (226)
. +..++. | ++..+...+++++++..|
T Consensus 257 ~--~~~~~~-p-~~~~a~~~l~~~~~~~~p 282 (320)
T 4euo_A 257 A--TATGYA-P-VNIESAKLMDPKIAKSLP 282 (320)
T ss_dssp H--HHHSCB-C-SBTTSGGGSCHHHHTTSG
T ss_pred H--HhcCCC-C-CCHHHHhhCCHHHHhhCC
Confidence 6 444553 4 466677778999887554
No 9
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=99.49 E-value=1.2e-13 Score=120.28 Aligned_cols=101 Identities=11% Similarity=-0.027 Sum_probs=85.8
Q ss_pred chhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhh
Q 040509 24 KLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRIL 103 (226)
Q Consensus 24 ~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa 103 (226)
+..+..+.|.+||+.|+++|++++..++.++.++++++| |+.+|.++++|+++++ |+++|++|| +|+++||.|+
T Consensus 186 ~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~i~k~s~---~~~~A~~fi-~fl~s~e~q~ 259 (324)
T 4i1d_A 186 SGAQSAQLLNDGEVDMEMAWNGRVSAVAKEGAKVSFTYN--QGILQSTSLCILKGAP---NLETAVKFL-NEAVDPVHQA 259 (324)
T ss_dssp SHHHHHHHHHHTSCSEEEEEHHHHHHHHHTTCSEEEEEE--EEEEEEEEEEEBTTCT---THHHHHHHH-HHHTCHHHHH
T ss_pred CcchHHHHHhCCCEEEEecccHHHHHHHhcCCCeEEEec--CeeeeccEEEEECCCC---CHHHHHHHH-HHHhCHHHHH
Confidence 345778999999999999999999988888999999995 9999999999999999 999999999 9999999999
Q ss_pred ccccccccCCCCCCcchhcccC--CchhhhcCC
Q 040509 104 LPFKQEVIPGTSPSALETTLVK--LPEELLKGK 134 (226)
Q Consensus 104 ~~~~~e~i~~~s~~~n~aa~~~--l~~el~~~~ 134 (226)
.+. +..++. | ++..+... +++++++..
T Consensus 260 ~~~--~~~~~~-p-~~~~a~~~~~~~~~~~~~~ 288 (324)
T 4i1d_A 260 NLP--LHIDYG-P-GNPKAFETNVIKPERAAQL 288 (324)
T ss_dssp HGG--GTSSCE-E-SSGGGGGSSCSCHHHHTTS
T ss_pred HHH--HhCCCC-C-CChhhhhhcCCCHHHHhhC
Confidence 987 444552 3 35555555 888888754
No 10
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis}
Probab=99.47 E-value=4.1e-13 Score=117.26 Aligned_cols=131 Identities=15% Similarity=0.089 Sum_probs=94.2
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCC-eEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhhc
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSN-VAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRILL 104 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~-i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa~ 104 (226)
.+..+.|.+|++.|+++|++++..++.+|.+ +.+++|++|+.+|.++++|++++ |+++|++|| +|+++||.|..
T Consensus 196 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~g~~~~~~~~~i~k~s----~~~~A~~Fi-~~l~s~e~q~~ 270 (333)
T 3pu5_A 196 NDPVVLLTSGEGAIGPGWDGRTFIAEDSTKGMVKWVDPTEGAVSSGPVMAVVKGG----KEDLAKAFM-NYALGEEAQKA 270 (333)
T ss_dssp THHHHHHHHTSCSEEEEEHHHHHHHHHHTTTSSEEECCTTCCEEECCEEEEBTTS----CHHHHHHHH-HHHTSHHHHHH
T ss_pred HHHHHHHHcCCEEEEecccHHHHHHHhCCCCceeEEcCCCceeeccceEEEeCCC----CHHHHHHHH-HHHcCHHHHHH
Confidence 3678899999999999999999988888888 99999999999999999999987 499999999 99999999998
Q ss_pred cccccccCCCCCCcchhcccCCchhhhcCCCCCCCCcccCCCcHHHhhhceecCCCCHHHHHHHHHHHHHhhc-ccc
Q 040509 105 PFKQEVIPGTSPSALETTLVKLPEELLKGKPSLGTDLIAGVPPAEILARCEFLEPLSEATFDVLRWLKFLRFY-EKR 180 (226)
Q Consensus 105 ~~~~e~i~~~s~~~n~aa~~~l~~el~~~~p~~~p~l~~i~P~~e~l~r~e~~~~l~~~~~~~y~~iW~~i~~-~~~ 180 (226)
+. +..++. | ++..+ .+++++++..|.... .+.++.+.+. +..+.+.+-|++... |.|
T Consensus 271 ~~--~~~g~~-P-~~~~~--~~~~~~~~~~p~~~~---~~~~d~~~~~----------~~~~~~~~~w~~~~~~~~~ 328 (333)
T 3pu5_A 271 FC--EAMYYG-A-VNRKV--QYSEKLKHRLPSIDS---VQLVDTALLI----------KNMSALLDLWNKRIASEGH 328 (333)
T ss_dssp HH--HHHTCB-C-SCTTC--CCCTTTTTTSCCTTT---CBCCCHHHHH----------HHHHHHHHHHHHHTC----
T ss_pred HH--HhcCCC-C-CCCCc--CCCHHHHhcCccHhh---ccccCHHHHH----------HHHHHHHHHHHHHhhhccc
Confidence 86 333442 3 34433 377777664432111 1223332221 234456677776666 554
No 11
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris}
Probab=99.41 E-value=3.7e-13 Score=119.19 Aligned_cols=101 Identities=7% Similarity=0.006 Sum_probs=85.2
Q ss_pred chhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhh
Q 040509 24 KLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRIL 103 (226)
Q Consensus 24 ~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa 103 (226)
+..+..+.+.+|++.|++.|++++..++.++.++++++| |+..|.++++|+++++ |+++|++|| +|+++||+|+
T Consensus 221 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~~~~i~k~s~---~~~~A~~fi-~~l~s~e~q~ 294 (365)
T 3rpw_A 221 TAAQPPQLILDGEADMCLAYTGSMSKLALEGAPIDLTFN--QGFVYYDFFSIPKGAP---NYDNALKLL-SWRLDPKRAA 294 (365)
T ss_dssp STTHHHHHHHTTSCSEEEEEHHHHHHHHHHTCSEEEEEE--EEEEEEEEEECBTTCT---THHHHHHHH-HHHTCHHHHH
T ss_pred CccHHHHHHHcCCeEEEEehhHHHHHHHhCCCCeEEeeC--CeeeeceEEEEECCCC---CHHHHHHHH-HHHcCHHHHH
Confidence 344788999999999999999999988888999999997 9999999999999999 999999999 9999999999
Q ss_pred ccccccccCCCCCCcchhcccC-CchhhhcCC
Q 040509 104 LPFKQEVIPGTSPSALETTLVK-LPEELLKGK 134 (226)
Q Consensus 104 ~~~~~e~i~~~s~~~n~aa~~~-l~~el~~~~ 134 (226)
.+. +..++. | ++..+... +++++++..
T Consensus 295 ~~~--~~~~~~-P-~~~~a~~~~l~~~~~~~~ 322 (365)
T 3rpw_A 295 QLT--STFPVA-L-PSKVVFDAATDKNIARYW 322 (365)
T ss_dssp HHH--HHSCCB-C-SCHHHHHHCSCGGGGGGS
T ss_pred HHH--HhcCCC-C-CChhHHhcCCCHHHHhhC
Confidence 886 444552 3 35555444 778877644
No 12
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=99.26 E-value=2.7e-11 Score=105.18 Aligned_cols=98 Identities=22% Similarity=0.151 Sum_probs=82.6
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhhc
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRILL 104 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa~ 104 (226)
..+..+.|.+|++.|++.|+..+......+.++.+++|++|+..+.++++|+++++ |+++|.+|| +|+++||.|..
T Consensus 219 ~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~---~~~~A~~fi-~~l~s~e~q~~ 294 (351)
T 4edp_A 219 SSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKNSK---NKDLAYEFI-NYALSKEVQEK 294 (351)
T ss_dssp HHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTCEEECCTTCCBEEEEEEEEBTTCS---CHHHHHHHH-HHHTSHHHHHH
T ss_pred hHHHHHHHHcCCEEEEecCcHHHHHHHhcCCCeeeeCCCCCcccceeeEEEECCCC---CHHHHHHHH-HHhcCHHHHHH
Confidence 45778899999999999999999888888999999999999999999999999999 999999999 99999999998
Q ss_pred cccccccCCCCCCcchhcccCCchhhhc
Q 040509 105 PFKQEVIPGTSPSALETTLVKLPEELLK 132 (226)
Q Consensus 105 ~~~~e~i~~~s~~~n~aa~~~l~~el~~ 132 (226)
+. +..++ .|. +..+ ..++++++
T Consensus 295 ~~--~~~g~-~P~-~~~~--~~~~~~~~ 316 (351)
T 4edp_A 295 TA--KALNE-SPV-NKEV--KLSEEETK 316 (351)
T ss_dssp HH--HHHCC-BCC-BTTC--CCCTTTTT
T ss_pred HH--HhcCC-CCC-cCCc--cCCHHHHh
Confidence 86 33333 232 3332 46666665
No 13
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=99.17 E-value=5.5e-11 Score=105.34 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=70.4
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHH-HHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhh
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPA-VKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRIL 103 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a-~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa 103 (226)
+.+..+.|.+|++.|++.|+++.... ...+.++++++|++|+..+.++++|+++++ |+++|++|| +|+++||.|.
T Consensus 216 ~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~I~k~s~---~~eaA~~Fi-~fl~s~e~q~ 291 (355)
T 3c9h_A 216 SSAILERVSDGRFVLGYNILGSYAADWASRHPDVGIVLPKDYTVVMSRIGLVPEAAA---NPELGRRYL-EFFMSKEGQT 291 (355)
T ss_dssp HHHHHHHHHTTSCSEEEEEEHHHHHHHHHHCTTEEEECCSSCEEEECCEEEEETTBS---CHHHHHHHH-HHHHSHHHHH
T ss_pred cHHHHHHHHCCCeEEEEecchhHHHHHHhcCCCeeEEecCCCceeeeeEEEEECCCC---CHHHHHHHH-HHHcCHHHHH
Confidence 35678899999999999999987765 356789999999999999999999999999 999999999 9999999998
Q ss_pred ccc
Q 040509 104 LPF 106 (226)
Q Consensus 104 ~~~ 106 (226)
.+.
T Consensus 292 ~~~ 294 (355)
T 3c9h_A 292 IMA 294 (355)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 14
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=99.07 E-value=8.1e-11 Score=102.08 Aligned_cols=78 Identities=9% Similarity=-0.118 Sum_probs=68.2
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHH------------------HcCCCeEEEecCCC----ceeeeeeEEEeCCCCCC
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAV------------------KRMSNVAVVVPKSG----ASLWADLWAIPAASRLH 82 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~------------------~~~~~i~~v~PkEG----~~~w~D~~~Ipk~A~~~ 82 (226)
..+..+.+.+||+++|+.|.+++.... +++.++++++|+|| ...+.++++|+++++
T Consensus 190 ~~~~~~~v~~Ge~~~~i~~~s~a~~~~~~~~~~p~~~~~~~~~~~~~~~~v~~~~p~~g~~~~~~~~~~~~~i~k~a~-- 267 (296)
T 3cg1_A 190 ETDLLGLVESGSIDYIFIYKSVAKQHNLSYITLPSEINLGDFSKEKFYGQISITLGSTGKTIKAKPIVYGVTVLKDAP-- 267 (296)
T ss_dssp GGGGHHHHHHTSSSEEEEEHHHHHHTTCEEEECCTTTSSCCGGGHHHHTTCEEEETTTCCEEECCCCEEEEEECTTCT--
T ss_pred hHHHHHHHhCCCCCEEEEEhhHHHHcCCCeEecChhhccccccccccccceeEEecCCcccccCceeeeeEEEeCCCC--
Confidence 347788999999999999999987642 24578999999999 667899999999999
Q ss_pred CCHHHHHHHHHhhCCCHHhhhccc
Q 040509 83 KTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 83 ~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
|+++|++|| ||+++||.|+.+.
T Consensus 268 -~~~~A~~Fi-~fl~s~e~q~~~~ 289 (296)
T 3cg1_A 268 -NREVAIEFL-RYLLSENGKRIFE 289 (296)
T ss_dssp -THHHHHHHH-HHHHSHHHHHHHH
T ss_pred -CHHHHHHHH-HHHhChHHHHHHH
Confidence 999999999 9999999998764
No 15
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=98.99 E-value=9.4e-10 Score=96.42 Aligned_cols=77 Identities=14% Similarity=-0.021 Sum_probs=67.3
Q ss_pred hhHHHHhhcCcEEEEEeccccHH-HHH-HcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhh
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVL-PAV-KRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRIL 103 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~-~a~-~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa 103 (226)
.+..+.|.+|++.|++.|+++.. ... ..+.++.+++|++|+..+.++++|+++++ |+++|.+|| +|+++||.|.
T Consensus 201 ~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~~i~~~s~---~~~~A~~fi-~fl~s~e~q~ 276 (330)
T 2qry_A 201 SEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASK---QPELAQKFL-QFMVSPAFQN 276 (330)
T ss_dssp HHHHHHHHTTSCSEEEEETTHHHHHHHHHCCCCEEECCCTTCEEEEEEEEEEBTTCS---CHHHHHHHH-HHHTSHHHHT
T ss_pred HHHHHHHhCCCEEEEEecccHHHHHhhhccCCceeEEeCCCCCeeeeeEEEEECCCC---CHHHHHHHH-HHHcCHHHHH
Confidence 46678899999999999998763 232 34678999999999999999999999999 999999999 9999999999
Q ss_pred ccc
Q 040509 104 LPF 106 (226)
Q Consensus 104 ~~~ 106 (226)
.+.
T Consensus 277 ~~~ 279 (330)
T 2qry_A 277 AIP 279 (330)
T ss_dssp THH
T ss_pred HHH
Confidence 875
No 16
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A
Probab=98.93 E-value=2e-09 Score=92.62 Aligned_cols=76 Identities=12% Similarity=0.053 Sum_probs=64.8
Q ss_pred hHHHHhhcCcEEEEEe---ccccHHH-----HHHcCCCeEEEecC---CCceeeeeeEEEeCCCCCCCCHHHHHHHHHhh
Q 040509 27 TLSEAFGIRDVWVAVG---WSSDVLP-----AVKRMSNVAVVVPK---SGASLWADLWAIPAASRLHKTNWRASQWSISI 95 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~---wsgd~~~-----a~~~~~~i~~v~Pk---EG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nf 95 (226)
+..+.+.+|++.|++. |.++... ....+.++.+++|+ +|+..+.++++|+++++ |+++|++|| +|
T Consensus 181 ~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~~i~~~s~---~~~~A~~fi-~f 256 (322)
T 3e13_X 181 DQARQVFAGEAKFAVMNTYYIGLLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSK---NQDAAKKFM-EF 256 (322)
T ss_dssp HHHHHHHHTSCSEEEEEHHHHHHHHTCSSHHHHHHHHTEEEECTTTTTTCBCEEEEEEEEETTCS---CHHHHHHHH-HH
T ss_pred HHHHHHHCCCCcEEeechHHHHHHHhccccchhccccceeEecCCCCCCCceeeeeeeEEecCCC---CHHHHHHHH-HH
Confidence 4578899999999998 3444432 22345789999999 89999999999999999 999999999 99
Q ss_pred CCCHHhhhccc
Q 040509 96 DPSMDRILLPF 106 (226)
Q Consensus 96 ll~Pe~qa~~~ 106 (226)
+++||.|..+.
T Consensus 257 l~s~e~q~~~~ 267 (322)
T 3e13_X 257 MLSPEIQKILT 267 (322)
T ss_dssp HTSHHHHHHHH
T ss_pred HhCHHHHHHHH
Confidence 99999999886
No 17
>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Probab=98.87 E-value=5.3e-09 Score=90.23 Aligned_cols=76 Identities=12% Similarity=-0.053 Sum_probs=65.7
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHH----cCCCeEEEecCC---CceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCC
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVK----RMSNVAVVVPKS---GASLWADLWAIPAASRLHKTNWRASQWSISIDPS 98 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~----~~~~i~~v~PkE---G~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~ 98 (226)
.+..+.+.+|++.|++.|++....... .+.++.+++|.+ |+..+.++++|+++++ |+++|.+|| +|+++
T Consensus 179 ~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~~i~~~s~---~~~~A~~fi-~fl~s 254 (312)
T 1xvx_A 179 STVMKAVNAGQIDGGVIYHYYRFVDQAKTGENSGKTQLHYFKHQDPGAFVSISGGGVLASSK---HPKEAQEFV-KWITG 254 (312)
T ss_dssp HHHHHHHHTTSSSEEEEETHHHHHHHTTTCTTTTTCEEECCCTTCGGGCEEEEEEEEBTTCS---SHHHHHHHH-HHHHS
T ss_pred hHHHHHHHcCceEEEEecchhHHHHHhhcccCCCceEEEccCCCCCcceeeeeeEEEecCCC---CHHHHHHHH-HHHhC
Confidence 467788999999999999987765432 346889889976 7788999999999999 999999999 99999
Q ss_pred HHhhhcc
Q 040509 99 MDRILLP 105 (226)
Q Consensus 99 Pe~qa~~ 105 (226)
|+.|..+
T Consensus 255 ~e~q~~~ 261 (312)
T 1xvx_A 255 KSGQDIL 261 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 18
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A
Probab=98.85 E-value=6.1e-09 Score=89.97 Aligned_cols=76 Identities=12% Similarity=-0.078 Sum_probs=65.5
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHH--c----CCCeEEEec--CCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCC
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVK--R----MSNVAVVVP--KSGASLWADLWAIPAASRLHKTNWRASQWSISIDPS 98 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~--~----~~~i~~v~P--kEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~ 98 (226)
+..+.|.+|++.|++.|+........ . +.++.+++| ++|+..+.++++|+++++ |+++|.+|| +|+++
T Consensus 180 ~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~i~~~s~---~~~aA~~fi-~~l~s 255 (320)
T 1q35_A 180 DQVKAIKEGICDYSIGNSYYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHSP---NKANAVKLI-EYLSG 255 (320)
T ss_dssp HHHHHHHHTSCSEEEEETHHHHHHHHSTTTHHHHHTEEEECCCSTTCBEEEEEEEEEBTTCT---THHHHHHHH-HHHHS
T ss_pred HHHHHHHCCCccEEeccHHHHHHhhhcccccCCCcceEEecCCCCCCccccceeEEEECCCC---CHHHHHHHH-HHHhC
Confidence 56788999999999998876655442 1 257999999 689999999999999999 999999999 99999
Q ss_pred HHhhhccc
Q 040509 99 MDRILLPF 106 (226)
Q Consensus 99 Pe~qa~~~ 106 (226)
|+.|..+.
T Consensus 256 ~e~q~~~~ 263 (320)
T 1q35_A 256 EKAQGLYA 263 (320)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998775
No 19
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=98.83 E-value=2.8e-09 Score=91.75 Aligned_cols=74 Identities=14% Similarity=0.048 Sum_probs=64.0
Q ss_pred HHHHhhcCcEEEEEeccccHHHHHHc-C-CCeEEEecCCCceeeeeeEEEeCCC----CCCCCHHHHHHHHHhhCCCHHh
Q 040509 28 LSEAFGIRDVWVAVGWSSDVLPAVKR-M-SNVAVVVPKSGASLWADLWAIPAAS----RLHKTNWRASQWSISIDPSMDR 101 (226)
Q Consensus 28 ~~~~l~~GEv~va~~wsgd~~~a~~~-~-~~i~~v~PkEG~~~w~D~~~Ipk~A----~~~~n~e~A~kFI~nfll~Pe~ 101 (226)
..+.+.+|+++++++|++++..++.+ + .++++++|++|. .+.++++|++++ + |+++|++|| +|+++|+.
T Consensus 177 ~~~~~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~v~P~~g~-~~~~~~~i~~~~~~~s~---~~~~A~~fi-~fl~s~e~ 251 (310)
T 1sbp_A 177 TNTFVERGIGDVLIAWENEALLATNELGKDKFEIVTPSESI-LAEPTVSVVDKVVEKKD---TKAVAEAYL-KYLYSPEG 251 (310)
T ss_dssp HHHHHTSCCCSEEEEEHHHHHHHHHTTTTTTEEEECCSEEE-CBCCEEEECHHHHHHHT---CHHHHHHHH-HGGGSHHH
T ss_pred HHHHHhCCCccEEEeechHHHHHHHhcCCCceEEEccCCce-eccCCeEEecccccccc---CHHHHHHHH-HHHcChHH
Confidence 56778899999999999998877665 5 789999998765 566899999987 8 999999999 99999999
Q ss_pred hhccc
Q 040509 102 ILLPF 106 (226)
Q Consensus 102 qa~~~ 106 (226)
|..+.
T Consensus 252 q~~~~ 256 (310)
T 1sbp_A 252 QEIAA 256 (310)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98664
No 20
>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, perip binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A
Probab=98.79 E-value=9.8e-09 Score=89.37 Aligned_cols=76 Identities=12% Similarity=0.007 Sum_probs=64.1
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHH--------cCCCeEEEecC---CCceeeeeeEEEeCCCCCCCCHHHHHHHHHhh
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVK--------RMSNVAVVVPK---SGASLWADLWAIPAASRLHKTNWRASQWSISI 95 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~--------~~~~i~~v~Pk---EG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nf 95 (226)
+..+.|.+|++.|++.|+........ .+.++.+++|+ +|+..+.++++|+++++ |+++|.+|| +|
T Consensus 197 ~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~~i~~~s~---~~~aA~~fi-~~ 272 (334)
T 2pt1_A 197 AQIEAVSSGEADLTLANTYYMGRLLESEDPAQKAIAENVGVFFPNQEGRGTHVNVSGVGVVKTAP---NREGAVKFI-EF 272 (334)
T ss_dssp HHHHHHHHTSCSEEEEEHHHHHHHHTCSCHHHHHHHHTEEEECCCTTTTCBCEEEEEEEEBTTCT---THHHHHHHH-HH
T ss_pred HHHHHHhcCceeEEeccchhhHhhhhcccccccccccceeEEecCCCCCCCEeceeEEEEECCCC---CHHHHHHHH-HH
Confidence 56788999999999997655443332 13579999998 68899999999999999 999999999 99
Q ss_pred CCCHHhhhccc
Q 040509 96 DPSMDRILLPF 106 (226)
Q Consensus 96 ll~Pe~qa~~~ 106 (226)
+++||.|..+.
T Consensus 273 l~s~e~q~~~~ 283 (334)
T 2pt1_A 273 LVSEPAQAFLA 283 (334)
T ss_dssp HTSHHHHHHHH
T ss_pred HhCHHHHHHHH
Confidence 99999998775
No 21
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A
Probab=98.78 E-value=2e-08 Score=86.87 Aligned_cols=76 Identities=14% Similarity=-0.040 Sum_probs=64.6
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHH-------cC--CCeEEEec------CCCceeeeeeEEEeCCCCCCCCHHHHHHH
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVK-------RM--SNVAVVVP------KSGASLWADLWAIPAASRLHKTNWRASQW 91 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~-------~~--~~i~~v~P------kEG~~~w~D~~~Ipk~A~~~~n~e~A~kF 91 (226)
+..+.|.+|++.|++.|+.....+.. .+ .++.+++| ++|+..+.++++|+++++ |+++|++|
T Consensus 181 ~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~i~~~s~---~~~~A~~f 257 (323)
T 1y9u_A 181 DVARDILGGICDIGLANAYYVGHMKNAEPGTDARKWGDAIKVVRPTFATAKDGGTHVNISGAAVAAHAP---NKANAVKL 257 (323)
T ss_dssp HHHHHHHTTSCSEEEEEHHHHHHHHHSCTTSHHHHHHHTEEEECCBCC----CCBCEEEEEEEEETTCT---THHHHHHH
T ss_pred HHHHHHhCCcceEEEecHHHHHHHhhccccccccCCCCceeEecCCCCCCCCCCeeeccceEEEEcCCC---CHHHHHHH
Confidence 67789999999999999887655443 22 35888899 689999999999999999 99999999
Q ss_pred HHhhCCCHHhhhccc
Q 040509 92 SISIDPSMDRILLPF 106 (226)
Q Consensus 92 I~nfll~Pe~qa~~~ 106 (226)
| +|+++|+.|..+.
T Consensus 258 i-~fl~s~e~q~~~~ 271 (323)
T 1y9u_A 258 L-EYLVSEPAQTLYA 271 (323)
T ss_dssp H-HHHTSHHHHHHHH
T ss_pred H-HHHcCHHHHHHHH
Confidence 9 9999999998775
No 22
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A
Probab=98.78 E-value=1.3e-08 Score=87.53 Aligned_cols=77 Identities=13% Similarity=-0.081 Sum_probs=65.4
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHH-HH---cCCCeEEEecC---CCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCC
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPA-VK---RMSNVAVVVPK---SGASLWADLWAIPAASRLHKTNWRASQWSISIDPS 98 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a-~~---~~~~i~~v~Pk---EG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~ 98 (226)
.+..+.+.+|++.|++.|+..+... .. .+.++.+++|. +|+..+.++++|+++++ |+++|.+|| +|+++
T Consensus 176 ~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~i~~~s~---~~~aA~~fi-~~l~s 251 (309)
T 1nnf_A 176 SVALQAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASK---NQAEAQKFV-DFLAS 251 (309)
T ss_dssp HHHHHHHHTTSCSEEEEEHHHHHHHHHHHCGGGCSEEEECCCTTCGGGCEEEEEEEEBTTCS---CHHHHHHHH-HHHHS
T ss_pred chHHHHHhcCCccEEEccHHHHHHHHhcccCCCCceEEeCCCCCCCceeeccccEEEEcCCC---CHHHHHHHH-HHHhC
Confidence 3667889999999999998877665 43 35678887653 47888999999999999 999999999 99999
Q ss_pred HHhhhccc
Q 040509 99 MDRILLPF 106 (226)
Q Consensus 99 Pe~qa~~~ 106 (226)
|+.|..+.
T Consensus 252 ~e~q~~~~ 259 (309)
T 1nnf_A 252 KKGQEALV 259 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998775
No 23
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A*
Probab=98.77 E-value=1.2e-08 Score=88.98 Aligned_cols=76 Identities=14% Similarity=-0.017 Sum_probs=64.7
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHH------c--CCCeEEEec-----CCCceeeeeeEEEeCCCCCCCCHHHHHHHHH
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVK------R--MSNVAVVVP-----KSGASLWADLWAIPAASRLHKTNWRASQWSI 93 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~------~--~~~i~~v~P-----kEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~ 93 (226)
+..+.|.+|++.|++.|+........ . +.++.+++| ++|+..+.++++|+++++ |+++|.+||
T Consensus 207 ~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~g~~~~~~~~~i~~~s~---~~~aA~~fi- 282 (346)
T 2voz_A 207 AQIRAIAAGIGDVAIANSYYYIRLQKSTDPADQEVVEKVSLFFPNTGSGERGTHVNVSGAGVLKNAP---NRDAAIAFL- 282 (346)
T ss_dssp HHHHHHHTTSCSEEEEEHHHHHHHHHCCCHHHHHHHHHEEEECCSCSTTSCCBCEEEEEEEEBTTCT---THHHHHHHH-
T ss_pred HHHHHHHCCCceEEecccHHHHHHhhcccccccCCCCceeEecCCCCCCCCCceecceeEEEeCCCC---CHHHHHHHH-
Confidence 57789999999999998765544332 1 256998899 689999999999999999 999999999
Q ss_pred hhCCCHHhhhccc
Q 040509 94 SIDPSMDRILLPF 106 (226)
Q Consensus 94 nfll~Pe~qa~~~ 106 (226)
+|+++||.|..+.
T Consensus 283 ~~l~s~e~q~~~~ 295 (346)
T 2voz_A 283 EYLASDDAQRYFA 295 (346)
T ss_dssp HHHTSHHHHHHHH
T ss_pred HHHcCHHHHHHHH
Confidence 9999999998775
No 24
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=98.73 E-value=2.6e-07 Score=83.06 Aligned_cols=98 Identities=14% Similarity=0.053 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhHh-hhhcccchhhHHHHhhcCcEEEEEeccccHHHHHHc-CCCeEEE-ecCC-----CceeeeeeEEEe
Q 040509 5 VGAIRSIQESSTK-FWYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKR-MSNVAVV-VPKS-----GASLWADLWAIP 76 (226)
Q Consensus 5 ~~~~~~~~e~l~~-~~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~-~~~i~~v-~PkE-----G~~~w~D~~~Ip 76 (226)
.++++.+++..++ +.+.....++..+.|.+|++.|.+.|+......... +.++.++ +|.. ++....++|+|+
T Consensus 229 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~ 308 (420)
T 4hw8_A 229 VKNAERLQKWYDKGYLPKAATHDVMIGLFKEGKVGQFVTGPWNINEYQETFGKDLGVTTLPTDGGKPMKPFLGVRGWYLS 308 (420)
T ss_dssp HHHHHHHHHHHHTTSSCSSCCHHHHHHHHHTTCEEEEEECSTTHHHHHHHHGGGEEEECCCEETTEECCCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCCCcchHHHHhhcCceEEEEeCCccHHHHHhhcCCCeEEEeCCCCCCCCCCcccccceEEEe
Confidence 4455555555443 222233445778899999999999998887776655 6788887 5752 345678999999
Q ss_pred CCCCCCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 77 AASRLHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 77 k~A~~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
++++ |+++|.+|| +|+++||.|..++
T Consensus 309 ~~s~---~~e~A~~fl-~~l~s~e~q~~~~ 334 (420)
T 4hw8_A 309 EYSK---HKYWAKDLM-LYITSKDTLQKYT 334 (420)
T ss_dssp TTCS---CHHHHHHHH-HHTTSHHHHHHHH
T ss_pred CCCC---CHHHHHHHH-HHHhCHHHHHHHH
Confidence 9999 999999999 9999999999876
No 25
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Probab=98.72 E-value=2.3e-07 Score=82.42 Aligned_cols=80 Identities=10% Similarity=0.081 Sum_probs=66.2
Q ss_pred chhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC--CCc----eeeeeeEEEeCCCCCCCCHHHHHHHHHhhC
Q 040509 24 KLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK--SGA----SLWADLWAIPAASRLHKTNWRASQWSISID 96 (226)
Q Consensus 24 ~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk--EG~----~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfl 96 (226)
+.++..+.|.+|++.|.+.++.........+.++.++ +|. +|. ..+.++++|+++++ |+++|.+||.+|+
T Consensus 210 ~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~~~i~~~s~---~~e~A~~fi~~~l 286 (382)
T 2gha_A 210 NYQIMDSMFREGQAAMIINGPWAIKAYKDAGIDYGVAPIPDLEPGVPARPFVGVQGFMVNAKSP---NKLLAIEFLTSFI 286 (382)
T ss_dssp CHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBSBTTBCCCCEEEEEEEEEBTTCT---THHHHHHHHHHTT
T ss_pred CHHHHHHHHhCCCccEEEcCHHHHHHHHhcCCceEEEeCCCCCCCCCCcccccceEEEEeCCCC---CHHHHHHHHHHHh
Confidence 4456778899999999998776665555557789988 786 563 56789999999999 9999999986899
Q ss_pred CCHHhhhccc
Q 040509 97 PSMDRILLPF 106 (226)
Q Consensus 97 l~Pe~qa~~~ 106 (226)
++|+.|...+
T Consensus 287 ~s~e~~~~~~ 296 (382)
T 2gha_A 287 AKKETMYRIY 296 (382)
T ss_dssp TSHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9999998776
No 26
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A*
Probab=98.68 E-value=6.7e-07 Score=79.64 Aligned_cols=78 Identities=19% Similarity=0.146 Sum_probs=64.9
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-CCc----eeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCC
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SGA----SLWADLWAIPAASRLHKTNWRASQWSISIDPS 98 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-EG~----~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~ 98 (226)
..+..+.|.+|++.|.+.++.........+.++.++ +|. +|. ..+.+.++|+++++ |+++|.+|| +|+++
T Consensus 230 ~~~~~~~f~~G~~am~~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~i~~~s~---~~e~A~~fi-~~l~s 305 (397)
T 2zyo_A 230 ADTVNGLFKSGKVAAVINGPWAIKDYQAAGINVGVAPLPKIDGKDAQTFIGVKGWYLSAYSK---YPKYATELM-QFLTS 305 (397)
T ss_dssp HHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEETTCS---CHHHHHHHH-HHTTS
T ss_pred hHHHHHHHhcCCeeEEEcCCccHHHHHhcCcceEEEecCCCCCCCCcceecceEEEEeCCCC---CHHHHHHHH-HHHcC
Confidence 346678899999999998877766655556789988 786 453 45678999999999 999999999 99999
Q ss_pred HHhhhccc
Q 040509 99 MDRILLPF 106 (226)
Q Consensus 99 Pe~qa~~~ 106 (226)
|+.|...+
T Consensus 306 ~e~~~~~~ 313 (397)
T 2zyo_A 306 KEALASRF 313 (397)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998776
No 27
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A
Probab=98.67 E-value=1.1e-07 Score=91.62 Aligned_cols=98 Identities=11% Similarity=-0.056 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhHhhhh-cccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ec-----CCCceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTKFWY-GVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VP-----KSGASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~~~~-~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~P-----kEG~~~w~D~~~Ipk 77 (226)
.++++.+++..+.... ...+.++..+.|.+|++.|.+.|+.........+.++.++ +| +.++..+.++|+|++
T Consensus 189 ~~al~~l~~l~~~g~~~~~~~~~~~~~~F~~Gk~am~~~g~w~~~~~~~~~~~~gv~~lP~~~g~~~~~~~g~~~~~I~~ 268 (637)
T 4dxb_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 268 (637)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCCSEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCCCCChHHHHHHHHcCCEEEEEeCHHHHHHHHhcCCCeEEEEcCCCCCCCCceEeeeeEEEEEC
Confidence 3444444444433211 1223446778899999999999888877777778889887 56 345677899999999
Q ss_pred CCCCCCCHHHHHHHHHh-hCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSIS-IDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~n-fll~Pe~qa~~~ 106 (226)
+|+ |+++|.+|| + ||++||+|..+.
T Consensus 269 ~Sk---n~eaA~~Fl-~~fl~s~E~q~~~~ 294 (637)
T 4dxb_A 269 ASP---NKELAKEFL-ENYLLTDEGLEAVN 294 (637)
T ss_dssp TCS---CHHHHHHHH-HHTTSSHHHHHHHH
T ss_pred CCC---CHHHHHHHH-HHHhCCHHHHHHHH
Confidence 999 999999999 7 999999999886
No 28
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=98.62 E-value=4e-08 Score=83.17 Aligned_cols=72 Identities=8% Similarity=-0.026 Sum_probs=62.1
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEE--EecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhh
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAV--VVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRIL 103 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~--v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa 103 (226)
.+..+.+.+||+++|+.|.+++.. ...+.+ .+|+++...+...++|+++++ | +.|++|+ ||+++|+.|.
T Consensus 157 ~~~~~~v~~Ge~d~gi~~~s~a~~----~~~~~~v~~~P~~~~~~~~~~~ai~k~~~---~-~~A~~Fi-~fl~S~eaq~ 227 (237)
T 3r26_A 157 RGALALVERNEAPLGIVYGSDAVA----SKGVKVVATFPEDSHKKVEYPVAVVEGHN---N-ATVKAFY-DYLKGPQAAE 227 (237)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHH----CSSEEEEEECCGGGSCCEEEEEEEBTTCC---S-HHHHHHH-HHHTSHHHHH
T ss_pred HHHHHHHHcCCCCEEEEEeccccc----CCCCeEEEECCcccCCeeeeeEEEEcCCC---C-HHHHHHH-HHHcCHHHHH
Confidence 467788999999999999998764 234555 489999999999999999999 9 7899999 9999999988
Q ss_pred ccc
Q 040509 104 LPF 106 (226)
Q Consensus 104 ~~~ 106 (226)
.+.
T Consensus 228 i~~ 230 (237)
T 3r26_A 228 IFK 230 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 29
>3osq_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia coli}
Probab=98.62 E-value=6.2e-07 Score=87.56 Aligned_cols=98 Identities=11% Similarity=-0.048 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhHh-hhhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-----CCceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTK-FWYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~-~~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-----EG~~~w~D~~~Ipk 77 (226)
.++++.+++..+. +.+...+.++..+.|.+|++.|.+.|+.........+.++.++ +|. .++..+.++++|++
T Consensus 471 ~eal~~l~~l~~~G~~~~~~~~~~~~~~F~sGkvam~~~g~w~~~~~~~~~~~~gvaplP~~~g~~~~~~~gg~~~~I~k 550 (661)
T 3osq_A 471 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 550 (661)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHCCCCCCCCCchHHHHHHHCCCeEEEEeChhHHHHHHhcCCCEEEEeCCCCCCCCCcccccceEEEEEC
Confidence 4455555554433 2222334557788999999999999988887777777889988 675 46778889999999
Q ss_pred CCCCCCCHHHHHHHHHh-hCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSIS-IDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~n-fll~Pe~qa~~~ 106 (226)
+++ |+++|.+|| + |+++||.|....
T Consensus 551 ~Sk---n~eaA~~Fl-~~flts~E~q~~~~ 576 (661)
T 3osq_A 551 ASP---NKELAKEFL-ENYLLTDEGLEAVN 576 (661)
T ss_dssp TCS---CHHHHHHHH-HHTTSSHHHHHHHH
T ss_pred CCC---CHHHHHHHH-HHHhcCHHHHHHHH
Confidence 999 999999999 9 999999999875
No 30
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli}
Probab=98.61 E-value=1.9e-07 Score=91.04 Aligned_cols=98 Identities=11% Similarity=-0.059 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhHhh-hhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-----CCceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTKF-WYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~~-~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-----EG~~~w~D~~~Ipk 77 (226)
.++++.+++..+.. .....+.++..+.+.+|++.+.+.|+.........+.++.++ +|. .++..+.++++|++
T Consensus 225 ~~ale~l~~L~~~g~~~~~~~~~~~~~~f~sGk~am~~~gsw~~~~l~~~~~~~gv~~~P~~~g~~~~~~~g~~~~aI~k 304 (653)
T 3osr_A 225 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 304 (653)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCCCCChHHHHHHHHCCCEEEEEeChhHHHHHhhcCCCEEEEEcCCCCCCCcceeeccEEEEEEC
Confidence 34455544444331 112234456788999999999999999888887778899999 786 56778999999999
Q ss_pred CCCCCCCHHHHHHHHHh-hCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSIS-IDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~n-fll~Pe~qa~~~ 106 (226)
+++ |+++|.+|| + |+++||.|..++
T Consensus 305 ~Sk---n~eaA~~FI-~nfl~S~E~q~~~a 330 (653)
T 3osr_A 305 ASP---NKELAKEFL-ENYLLTDEGLEAVN 330 (653)
T ss_dssp TCS---CHHHHHHHH-HHTTSSHHHHHHHH
T ss_pred CCC---CHHHHHHHH-HHHccCHHHHHHHH
Confidence 999 999999999 9 999999999886
No 31
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermoph protein, periplasmic binding protein, sugar binding protein; HET: MLR; 1.95A {Thermus thermophilus}
Probab=98.59 E-value=1.7e-06 Score=76.92 Aligned_cols=78 Identities=12% Similarity=-0.011 Sum_probs=64.6
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-CC------ceeeeeeEEEeCCCCCCCCHHHHHHHHHhhC
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG------ASLWADLWAIPAASRLHKTNWRASQWSISID 96 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-EG------~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfl 96 (226)
..+..+.|.+|++.|.+.++.........+.++.++ +|. +| +..+.++++|+++++ |+++|.+|| +|+
T Consensus 215 ~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~~~i~~~s~---~~e~A~~fl-~~l 290 (386)
T 2gh9_A 215 YGVADGAFKDGALAMILNGPWALGDYKKAKVDFGIAPFPVPPGAKNPWGPFLGVQGVVVNAYSK---NKTQAVNFA-KTL 290 (386)
T ss_dssp HHHHHHHHHHTCEEEEEECGGGHHHHHHTTCCEEEECCCCCTTCSSCCCCEEEEEEEEEBTTCT---THHHHHHHH-HHH
T ss_pred hHHHHHHHhCCCeeEEEeCcHHHHHHHhcCCCeEEEecCCCCCCCCcccccccceEEEEECCCC---CHHHHHHHH-HHH
Confidence 346678899999999998877666555557789988 786 33 345788999999999 999999999 999
Q ss_pred CCHHhhhccc
Q 040509 97 PSMDRILLPF 106 (226)
Q Consensus 97 l~Pe~qa~~~ 106 (226)
++|+.|...+
T Consensus 291 ~s~e~~~~~~ 300 (386)
T 2gh9_A 291 VTGRNLVAFN 300 (386)
T ss_dssp TSHHHHHHHH
T ss_pred hCHHHHHHHH
Confidence 9999998775
No 32
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=98.59 E-value=9.1e-07 Score=80.93 Aligned_cols=76 Identities=9% Similarity=-0.158 Sum_probs=65.5
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHcCC-----CeEEE-ecC----CCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhC
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKRMS-----NVAVV-VPK----SGASLWADLWAIPAASRLHKTNWRASQWSISID 96 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~~~-----~i~~v-~Pk----EG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfl 96 (226)
+..+.|.+|++.|.+.|+.........++ ++.++ +|. .++..+.++++|+++++ |+++|.+|| +|+
T Consensus 249 ~~~~~f~~G~~am~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~I~~~s~---~~eaA~~fl-~~l 324 (458)
T 3uor_A 249 NVWYEFFNGYYAFYLSGPWNVREFKLRQPPGMEGNWGTAPLPGPNGLGAGIAGGSSLVIFKSSQ---HKDASWKLI-EYL 324 (458)
T ss_dssp CHHHHHHHTSEEEEEECTHHHHHHHHHCCGGGTTSEEEECCBBSSSBCCCBCEEEEEEEBTTCS---CHHHHHHHH-HHH
T ss_pred HHHHHHhcCCEEEEEcCcchHHHHhhhCcccccceEEEEeCCCCCCCCccccCceEEEEECCCC---CHHHHHHHH-HHH
Confidence 46789999999999998887766655442 78888 687 56788999999999999 999999999 999
Q ss_pred CCHHhhhccc
Q 040509 97 PSMDRILLPF 106 (226)
Q Consensus 97 l~Pe~qa~~~ 106 (226)
++||.|..++
T Consensus 325 ~s~e~q~~~~ 334 (458)
T 3uor_A 325 SQPQVQARFH 334 (458)
T ss_dssp TSHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9999999876
No 33
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Probab=98.58 E-value=1.2e-06 Score=80.22 Aligned_cols=98 Identities=11% Similarity=-0.059 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhHhh-hhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-----CCceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTKF-WYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~~-~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-----EG~~~w~D~~~Ipk 77 (226)
.++++.+++..+.. .....+..+..+.|.+|++.|.+.|+.........+.++.++ +|. .+...+.++++|++
T Consensus 189 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~i~~ 268 (507)
T 3oai_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 268 (507)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHCCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCCCcchhHHHHHHhcCCeEEEeccccccChhhhcCCceeEEeCCCCCCCCCCccccceEEEEEC
Confidence 34555555544331 112234456788999999999999998887777778889988 475 23467889999999
Q ss_pred CCCCCCCHHHHHHHHHh-hCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSIS-IDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~n-fll~Pe~qa~~~ 106 (226)
+++ |+++|.+|| + |+++|+.|....
T Consensus 269 ~s~---~~e~A~~fl-~~~l~s~e~~~~~~ 294 (507)
T 3oai_A 269 ASP---NKELAKEFL-ENYLLTDEGLEAVN 294 (507)
T ss_dssp TCT---THHHHHHHH-HHTTSSHHHHHHHH
T ss_pred CCC---CHHHHHHHH-HHHhcCHHHHHHHh
Confidence 999 999999999 8 999999998775
No 34
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=98.58 E-value=9.3e-07 Score=82.59 Aligned_cols=98 Identities=11% Similarity=-0.056 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhHhh-hhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-----CCceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTKF-WYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~~-~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-----EG~~~w~D~~~Ipk 77 (226)
.++++.+++..+.. .....+.++..+.|.+|++.|.+.|+.........+.++.++ +|. .+...+.+.++|++
T Consensus 189 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~ 268 (500)
T 3ob4_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINA 268 (500)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHTSSCCEEEECCCEETTEECCCEEEEEEEEEET
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHcCCeeEEecCchhHHHHHhcCCCeEEEECCCCCCCCccccccceEEEEEC
Confidence 44555555544431 112234456788999999999999998888777777889888 575 23467889999999
Q ss_pred CCCCCCCHHHHHHHHHh-hCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSIS-IDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~n-fll~Pe~qa~~~ 106 (226)
+++ |+++|.+|| + |+++|+.|..+.
T Consensus 269 ~sk---~~eaA~~Fi-~~~l~s~e~q~~~~ 294 (500)
T 3ob4_A 269 ASP---NKELAKEFL-ENYLLTDEGLEAVN 294 (500)
T ss_dssp TCS---CHHHHHHHH-HHTTTSHHHHHHHH
T ss_pred CCC---CHHHHHHHH-HHHhcCHHHHHHHH
Confidence 999 999999999 8 999999998775
No 35
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=98.55 E-value=6.8e-07 Score=80.01 Aligned_cols=78 Identities=15% Similarity=0.038 Sum_probs=62.0
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHc-----CCCeEEE-ecCC----CceeeeeeEEEeCCCCCCCCHHHHHHHHHh
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKR-----MSNVAVV-VPKS----GASLWADLWAIPAASRLHKTNWRASQWSIS 94 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~-----~~~i~~v-~PkE----G~~~w~D~~~Ipk~A~~~~n~e~A~kFI~n 94 (226)
..+..+.|.+|++.|.+.++......... +.++.++ +|.. ++..+.++++|+++++ |+++|.+|| +
T Consensus 242 ~~~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~I~~~s~---~~e~A~~fl-~ 317 (412)
T 3k01_A 242 WNNMQNAFKSGKVAMMVNGPWAIEDVKAGARFKDAGNLGVAPVPAGSAGQGSPQGGWNLSVYAGSK---NLDASYAFV-K 317 (412)
T ss_dssp HHHHHHHHHHTSEEEEEECGGGHHHHHTSTTCSSGGGEEEEECCBCSSCCCEEEEEEEEEEBTTCS---CHHHHHHHH-H
T ss_pred hhhHHHHHhcCCEEEEECCccchHhhhhccccCccceeEEEeCCCCCCCCccccCceeEEEeCCCC---CHHHHHHHH-H
Confidence 34667899999999999976655544432 2348877 4642 2678889999999999 999999999 9
Q ss_pred hCCCHHhhhccc
Q 040509 95 IDPSMDRILLPF 106 (226)
Q Consensus 95 fll~Pe~qa~~~ 106 (226)
|+++||.|..++
T Consensus 318 ~l~s~e~q~~~~ 329 (412)
T 3k01_A 318 YMSSAKVQQQTT 329 (412)
T ss_dssp HHHSHHHHHHHH
T ss_pred HHcCHHHHHHHH
Confidence 999999998876
No 36
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=98.54 E-value=7e-08 Score=83.85 Aligned_cols=71 Identities=13% Similarity=-0.020 Sum_probs=58.8
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEE-EecCCCc-------------------------eeeeeeEEEeCCC
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAV-VVPKSGA-------------------------SLWADLWAIPAAS 79 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~-v~PkEG~-------------------------~~w~D~~~Ipk~A 79 (226)
.+..+.+.+||+++|+.|.+++... + +.+ .+|+++. ..+.++++|++++
T Consensus 192 ~~~~~~v~~Ge~d~~i~~~s~a~~~---~--~~~~~~P~~~~~~~~~~~~~y~~v~~~~~~g~~~~~~~i~~~~~i~k~a 266 (296)
T 3cfx_A 192 VELSSALETGEIDYLYIYRSVAEQH---G--FEYVALPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVTIPNNA 266 (296)
T ss_dssp GGGHHHHHTTSCSEEEEEHHHHHHH---T--CEEECCCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTTC
T ss_pred HHHHHHHHcCCCCEEEeehhhHhhC---C--CCEEECChhhcccCccccccccceeeeccCCccccCCceEEEEEeecCC
Confidence 4778899999999999999888753 2 333 4788863 2257899999999
Q ss_pred CCCCCHHHHHHHHHhhCCCHHhhhcc
Q 040509 80 RLHKTNWRASQWSISIDPSMDRILLP 105 (226)
Q Consensus 80 ~~~~n~e~A~kFI~nfll~Pe~qa~~ 105 (226)
+ |+++|++|| |||++|+.|..+
T Consensus 267 ~---~~~~A~~Fi-~fllS~e~q~i~ 288 (296)
T 3cfx_A 267 E---NSELATEFV-ALLLGETGQQIF 288 (296)
T ss_dssp S---CHHHHHHHH-HHHHSHHHHHHH
T ss_pred C---CHHHHHHHH-HHHhChHHHHHH
Confidence 9 999999999 999999999755
No 37
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=98.53 E-value=1.9e-06 Score=80.76 Aligned_cols=99 Identities=11% Similarity=-0.059 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhHhh-hhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-----CCceeeeeeEEEe
Q 040509 4 IVGAIRSIQESSTKF-WYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIP 76 (226)
Q Consensus 4 ~~~~~~~~~e~l~~~-~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-----EG~~~w~D~~~Ip 76 (226)
..++++.+++..+.. .....+..+..+.|.+|++.|.+.|+.........+.++.++ +|. .++..+.++++|+
T Consensus 189 ~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~ 268 (523)
T 3py7_A 189 AKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGIN 268 (523)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHSSCCEEEECCCEETTEECCCEEEEEEEEEB
T ss_pred HHHHHHHHHHHHhcCCCCCCCChHHHHHHHhcCCEEEEecCCcchhHHHhcCCceeEEECCCCCCCCCCccccceEEEEE
Confidence 345555555554431 222234456788999999999999998888777778889888 475 2345788999999
Q ss_pred CCCCCCCCHHHHHHHHHh-hCCCHHhhhccc
Q 040509 77 AASRLHKTNWRASQWSIS-IDPSMDRILLPF 106 (226)
Q Consensus 77 k~A~~~~n~e~A~kFI~n-fll~Pe~qa~~~ 106 (226)
++++ |+++|.+|| + |+++|+.|....
T Consensus 269 ~~sk---~~eaA~~fi-~~~l~s~e~q~~~~ 295 (523)
T 3py7_A 269 AASP---NKELAKEFL-ENYLLTDEGLEAVN 295 (523)
T ss_dssp TTCS---CHHHHHHHH-HHTTSSHHHHHHHH
T ss_pred CCCC---CHHHHHHHH-HHHhcCHHHHHHHh
Confidence 9999 999999999 8 999999998875
No 38
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=98.53 E-value=3.8e-06 Score=77.86 Aligned_cols=98 Identities=12% Similarity=-0.053 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhHhh-hhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEe-cC-----CCceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTKF-WYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVV-PK-----SGASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~~-~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~-Pk-----EG~~~w~D~~~Ipk 77 (226)
.++++.+++..+.. .....+..+..+.|.+|++.|.+.|+.........+.++.++. |. .++..+.++++|++
T Consensus 203 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~ 282 (471)
T 3mq9_A 203 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 282 (471)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHTTTCCEEEECCCBBTTBCCCCEEEEEEEEEBS
T ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHcCCeEEEEecchhhHHHHhcCCCEEEEECCCCCCCCCcceecceEEEEEC
Confidence 44555555544431 1222344567889999999999999988877777778888884 75 23467889999999
Q ss_pred CCCCCCCHHHHHHHHHh-hCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSIS-IDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~n-fll~Pe~qa~~~ 106 (226)
+++ |+++|.+|| + |+++|+.|....
T Consensus 283 ~sk---~~eaA~~Fi-~~~l~s~e~q~~~~ 308 (471)
T 3mq9_A 283 ASP---NKELAKEFL-ENYLLTDEGLEAVN 308 (471)
T ss_dssp SCS---CHHHHHHHH-HHTTSSHHHHHHHH
T ss_pred CCC---CHHHHHHHH-HHHhcCHHHHHHHH
Confidence 999 999999999 8 999999998775
No 39
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=98.52 E-value=2.7e-06 Score=78.30 Aligned_cols=98 Identities=12% Similarity=-0.053 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhHhh-hhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEe-cC-----CCceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTKF-WYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVV-PK-----SGASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~~-~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~-Pk-----EG~~~w~D~~~Ipk 77 (226)
.++++.+++..+.. .....+..+..+.|.+|++.|.+.|+.........+.++.++. |. .++..+.+.++|++
T Consensus 191 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~ 270 (475)
T 3n94_A 191 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 270 (475)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHhcCCCCCCCChhHHHHHHHcCCEEEEecCccccChhhhcCCceEEEeCCCCCCCCCCccccceEEEEEC
Confidence 34555555444331 1122344567889999999999999988877777788899884 75 23467889999999
Q ss_pred CCCCCCCHHHHHHHHHh-hCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSIS-IDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~n-fll~Pe~qa~~~ 106 (226)
+++ |+++|.+|| + |+++|+.|....
T Consensus 271 ~s~---~~e~A~~fi-~~~l~s~e~~~~~~ 296 (475)
T 3n94_A 271 ASP---NKELAKEFL-ENYLLTDEGLEAVN 296 (475)
T ss_dssp TCT---THHHHHHHH-HHTTSSHHHHHHHH
T ss_pred CCC---CHHHHHHHH-HHHhcCHHHHHHHH
Confidence 999 999999999 8 999999998775
No 40
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=98.52 E-value=6.9e-08 Score=83.71 Aligned_cols=72 Identities=13% Similarity=-0.057 Sum_probs=59.2
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCc-------------------------eeeeeeEEEeCCCC
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGA-------------------------SLWADLWAIPAASR 80 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~-------------------------~~w~D~~~Ipk~A~ 80 (226)
.+..+.+.+||+++|+.|.+++... +-++ +.+|+||. ..+.++++|+++++
T Consensus 191 ~~~~~~v~~Ge~d~~i~~~s~a~~~---~~~~-~~~P~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~i~k~a~ 266 (295)
T 3cij_A 191 MELIHLVESGELDYFFIYKSVAKQH---GFNF-VELPVEIDLSSPDYAELYSKVKVVLANGKEVTGKPIVYGITIPKNAE 266 (295)
T ss_dssp HHHHHHHHTTSCSEEEEEHHHHHHT---TCEE-EECCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTTCS
T ss_pred HHHHHHHhCCCCCEEEEEeehhhhC---CCCE-EECchhhccCCccccccccceEEeccCCccccCCceEEEEEeecCCC
Confidence 3778899999999999999888652 3222 45899873 22578999999999
Q ss_pred CCCCHHHHHHHHHhhCCCHHhhhcc
Q 040509 81 LHKTNWRASQWSISIDPSMDRILLP 105 (226)
Q Consensus 81 ~~~n~e~A~kFI~nfll~Pe~qa~~ 105 (226)
|+++|++|| |||++|+.|..+
T Consensus 267 ---~~~~A~~Fi-~fl~S~e~q~i~ 287 (295)
T 3cij_A 267 ---NRELAVEFV-KLVISEEGQEIL 287 (295)
T ss_dssp ---CHHHHHHHH-HHHHSHHHHHHH
T ss_pred ---CHHHHHHHH-HHHhChhHHHHH
Confidence 999999999 999999999855
No 41
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP: c.94.1.1 PDB: 1urg_A* 1urd_A*
Probab=98.51 E-value=4.8e-07 Score=80.87 Aligned_cols=98 Identities=15% Similarity=0.017 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhHh--hhhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC--CC----ceeeeeeEEE
Q 040509 5 VGAIRSIQESSTK--FWYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK--SG----ASLWADLWAI 75 (226)
Q Consensus 5 ~~~~~~~~e~l~~--~~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk--EG----~~~w~D~~~I 75 (226)
.++++.+++..++ +.....+..+..+.|.+|++.|.+.++.........+.++.++ +|. +| +..+.++++|
T Consensus 213 ~~al~~~~~l~~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~~~i 292 (402)
T 1urs_A 213 VQAYTLMRDMVSKYHWMTPSTNGSIAKAEFLAGKIGMYVSGPWDTADIEKAKIDFGVTPWPTLPNGKHATPFLGVITAFV 292 (402)
T ss_dssp HHHHHHHHHHHHTSCSCCTTCCHHHHHHHHHTTCCSEEEECGGGHHHHHHTTCCEEEECCCCCTTSCCCCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCcCCCCCCchhhHHHHhcCCeeEEEcCcchHHHHHhcCCceEEEeCCCCCCCCCccceecceEEEE
Confidence 4445555444432 1111123446778999999999998877666655557789998 785 24 3467889999
Q ss_pred eCCCCCCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 76 PAASRLHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 76 pk~A~~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
+++++ |+++|.+|| +|+++|+.|...+
T Consensus 293 ~~~s~---~~e~A~~fl-~~l~s~e~~~~~~ 319 (402)
T 1urs_A 293 NKESK---TQAADWSLV-QALTSAQAQQMYF 319 (402)
T ss_dssp BTTCS---CHHHHHHHH-HHHTSHHHHHHHH
T ss_pred eCCCC---CHHHHHHHH-HHHcCHHHHHHHH
Confidence 99999 999999999 9999999998776
No 42
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=98.49 E-value=1.9e-06 Score=78.68 Aligned_cols=98 Identities=10% Similarity=-0.076 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhHhh-hhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecCC-----CceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTKF-WYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~~-~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~PkE-----G~~~w~D~~~Ipk 77 (226)
.++++.+++..++. .....+..+..+.|.+|++.|.+.|+.........+.++.++ +|.. ++..+.++++|++
T Consensus 189 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~I~~ 268 (449)
T 3iot_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 268 (449)
T ss_dssp HHHHHHHHHHHHHTSSCTTCCHHHHHHHHHTTCBSEEEECGGGHHHHHHHTCCEEEECCCEETTEECCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHhcCCCCCCCChhHHHHHHHcCCeeEEeccccchhhHHhcCCceeEEeCCCCCCCCCCceeceeEEEEEC
Confidence 34555555544431 112234456788999999999999988887777778889888 4752 2467889999999
Q ss_pred CCCCCCCHHHHHHHHHh-hCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSIS-IDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~n-fll~Pe~qa~~~ 106 (226)
+++ |+++|.+|| . |++++|.+..+.
T Consensus 269 ~s~---~~e~A~~fl-~~~l~s~e~~~~~~ 294 (449)
T 3iot_A 269 ASP---NKELAKEFL-ENYLLTDEGLEAVN 294 (449)
T ss_dssp TCS---CHHHHHHHH-HHTTSSHHHHHHHH
T ss_pred CCC---CHHHHHHHH-HHHhcCHHHHHHHH
Confidence 999 999999999 8 999999998775
No 43
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=98.48 E-value=4.3e-07 Score=80.65 Aligned_cols=98 Identities=13% Similarity=-0.011 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhHhhhhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC---CC------ceeeeeeEE
Q 040509 5 VGAIRSIQESSTKFWYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK---SG------ASLWADLWA 74 (226)
Q Consensus 5 ~~~~~~~~e~l~~~~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk---EG------~~~w~D~~~ 74 (226)
+++++.+++...+......+.++..+.|.+|++.|.+.++.........+.++.++ +|. +| +..+.++++
T Consensus 190 ~~al~~~~~l~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~g~~~~P~~~~~g~~~~~~~~~g~~~~~ 269 (381)
T 1elj_A 190 IEGFKFFFTEIWPYMAPTGDYNTQQSIFLEGRAPMMVNGPWSINDVKKAGINFGVVPLPPIIKDGKEYWPRPYGGVKLIY 269 (381)
T ss_dssp HHHHHHHHHHTGGGSCSCCCHHHHHHHHHTTSSSEEEECGGGHHHHHHTTCCEEEECCCCEEETTEEECCCCEEEEEEEE
T ss_pred HHHHHHHHHHhhccCCCCCChhHHHHHHhcCCeeEEecCchhhhHHHhcCCceeEEeCCCcCCCCccCCCCccccceEEE
Confidence 34555554443332221233445677899999999988776665555557789988 784 55 456788999
Q ss_pred EeCCCCCCCCHHHHHHHHHhhCCC-HHhhhccc
Q 040509 75 IPAASRLHKTNWRASQWSISIDPS-MDRILLPF 106 (226)
Q Consensus 75 Ipk~A~~~~n~e~A~kFI~nfll~-Pe~qa~~~ 106 (226)
|+++++ |+++|.+|| +|+++ ||.|....
T Consensus 270 i~~~s~---~~e~A~~fi-~~l~~~~e~~~~~~ 298 (381)
T 1elj_A 270 FAAGIK---NKDAAWKFA-KWLTTSEESIKTLA 298 (381)
T ss_dssp EBTTCS---CHHHHHHHH-HHHHHCHHHHHHHH
T ss_pred EECCCC---CHHHHHHHH-HHHhcCHHHHHHHH
Confidence 999999 999999999 99999 99998775
No 44
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=98.47 E-value=8.2e-07 Score=79.38 Aligned_cols=80 Identities=14% Similarity=0.007 Sum_probs=65.8
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC--CC-----ceeeeeeEEEeCCCCCCCCHHHHHHHHHhhC
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK--SG-----ASLWADLWAIPAASRLHKTNWRASQWSISID 96 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk--EG-----~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfl 96 (226)
.++..+.|.+|++.|.+.|+.........+.++.++ +|. +| ...+.+.|+|+++++ ++|+++|.+|| +|+
T Consensus 247 ~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~I~~~s~-~~~~e~A~~fl-~~l 324 (414)
T 3quf_A 247 ADQVKQEFVSGNLGVMRSGPWDLPDLQKSDIDFGVAPFPAYSKEDGQWINGGPDQGFAIASRAS-DKEKAAAKKFL-AYL 324 (414)
T ss_dssp HHHHHHHHHTTCEEEEEECGGGHHHHHHSSCCEEEECBCBSSCTTCCBEEEEESCEEEEBSSSC-HHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHcCCceEEEcCcccHHHHhhhccceeEEecCCcCCCCccceecccCccEEEECCCC-ccCHHHHHHHH-HHH
Confidence 346678999999999999998887777777889988 674 34 234677899999886 23699999999 999
Q ss_pred CCHHhhhccc
Q 040509 97 PSMDRILLPF 106 (226)
Q Consensus 97 l~Pe~qa~~~ 106 (226)
++||.|..+.
T Consensus 325 ~s~e~~~~~~ 334 (414)
T 3quf_A 325 NSEEGLEAFT 334 (414)
T ss_dssp TSHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9999999876
No 45
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=98.45 E-value=2.8e-06 Score=79.73 Aligned_cols=98 Identities=11% Similarity=-0.059 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhHhh-hhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-----CCceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTKF-WYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~~-~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-----EG~~~w~D~~~Ipk 77 (226)
.++++.+++..+.. .....+.++..+.|.+|++.|.+.|+.........+.++.++ +|. .++..+.++++|++
T Consensus 190 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~ 269 (522)
T 3mp6_A 190 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 269 (522)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHSSCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCCCCChHHHhhHHhcCCEeEEeccCcchhhhhhcCCceEEEECCCCCCCCCcccccceEEEEEC
Confidence 34555555544431 112234456788999999999999998887777778889988 575 23467889999999
Q ss_pred CCCCCCCHHHHHHHHHh-hCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSIS-IDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~n-fll~Pe~qa~~~ 106 (226)
+++ |+++|.+|| . |+++|+.|..+.
T Consensus 270 ~sk---~~eaA~~Fi-~~~l~s~e~q~~~~ 295 (522)
T 3mp6_A 270 ASP---NKELAKEFL-ENYLLTDEGLEAVN 295 (522)
T ss_dssp TCT---THHHHHHHH-HHTTSSHHHHHHHH
T ss_pred CCC---CHHHHHHHH-HHHhcCHHHHHHHH
Confidence 999 999999999 8 999999999875
No 46
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=98.44 E-value=3.5e-06 Score=78.29 Aligned_cols=98 Identities=10% Similarity=-0.076 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhHhh-hhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecCC-----CceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTKF-WYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~~-~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~PkE-----G~~~w~D~~~Ipk 77 (226)
.++++.+++..+.. .....+..+..+.|.+|++.|.+.|+.........+.++.++ +|.. +...+.+.++|++
T Consensus 189 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~i~~ 268 (581)
T 3o3u_N 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 268 (581)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHhcCcCCCCCChhhHhhHHhcCCEEEEeccchhhchHhhcCCceEEEECCCCCCCCCcccccceEEEEEC
Confidence 34555555544331 112234456788999999999999988887777778889988 4752 3467889999999
Q ss_pred CCCCCCCHHHHHHHHHh-hCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSIS-IDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~n-fll~Pe~qa~~~ 106 (226)
+++ |+++|.+|| + |+++||.|....
T Consensus 269 ~s~---~~e~A~~fl-~~~l~s~e~~~~~~ 294 (581)
T 3o3u_N 269 ASP---NKELAKEFL-ENYLLTDEGLEAVN 294 (581)
T ss_dssp TCS---CHHHHHHHH-HHTTSSHHHHHHHH
T ss_pred CCC---CHHHHHHHH-HHHhcCHHHHHHHh
Confidence 999 999999999 8 999999999875
No 47
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Probab=98.44 E-value=3.4e-06 Score=80.51 Aligned_cols=98 Identities=10% Similarity=-0.073 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhHhh-hhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecCC-----CceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTKF-WYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~~-~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~PkE-----G~~~w~D~~~Ipk 77 (226)
.++++.+++..++. .....+..+..+.+.+|++.|.+.|+.........+.++.++ +|.. +...+.++++|++
T Consensus 189 ~~al~~l~~l~~~G~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~ 268 (568)
T 3h4z_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINA 268 (568)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHTSSCCEEEECCCEETTEECCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCCCCChHHHHHHHHcCCeEEEEEChhHHHHHHhcCCCEEEEECCCCCCCCccceecceEEEEEC
Confidence 34555555544431 122234456788999999999999999888777777888887 4752 2357889999999
Q ss_pred CCCCCCCHHHHHHHHHh-hCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSIS-IDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~n-fll~Pe~qa~~~ 106 (226)
+++ |+++|.+|| + |+++||.|....
T Consensus 269 ~sk---n~eaA~~Fl-~~fl~s~e~q~~~~ 294 (568)
T 3h4z_A 269 ASP---NKELAKEFL-ENYLLTDEGLEAVN 294 (568)
T ss_dssp TCS---CHHHHHHHH-HHTTSSHHHHHHHH
T ss_pred CCC---CHHHHHHHH-HHHhcCHHHHHHHH
Confidence 999 999999999 9 999999999875
No 48
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Probab=98.43 E-value=4.5e-06 Score=78.53 Aligned_cols=98 Identities=11% Similarity=-0.059 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhHhh-hhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-----CCceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTKF-WYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~~-~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-----EG~~~w~D~~~Ipk 77 (226)
.++++.+++..+.. .....+..+..+.|.+|++.|.+.|+.........+.++.++ +|. .+...+.+.++|++
T Consensus 191 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~ 270 (539)
T 3h3g_A 191 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 270 (539)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHCCCeeEEEecchhhhhHHHcCCcEEEEECCCCCCCCCcccccceEEEEEC
Confidence 44555555544431 112234456788999999999999988887777778889888 475 23467889999999
Q ss_pred CCCCCCCHHHHHHHHHh-hCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSIS-IDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~n-fll~Pe~qa~~~ 106 (226)
+++ |+++|.+|| + |+++|+.|..+.
T Consensus 271 ~s~---~~eaA~~Fl-~~~l~s~e~q~~~~ 296 (539)
T 3h3g_A 271 ASP---NKELAKEFL-ENYLLTDEGLEAVN 296 (539)
T ss_dssp TCS---CHHHHHHHH-HHTTTSHHHHHHHH
T ss_pred CCC---CHHHHHHHH-HHHhcCHHHHHHHH
Confidence 999 999999999 8 999999998775
No 49
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=98.42 E-value=3.5e-06 Score=79.33 Aligned_cols=99 Identities=11% Similarity=-0.035 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhHh-hhhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-CC----ceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTK-FWYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~-~~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-EG----~~~w~D~~~Ipk 77 (226)
.++++.+++..+. +.+...+.++..+.|.+|++.|.+.++.........+.++.++ +|. +| +..+.++|+|++
T Consensus 189 ~~al~~l~~L~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~gv~p~P~~~g~~~~~~~g~~~~~I~~ 268 (494)
T 1y4c_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 268 (494)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHCCCCCCCCChhHHHHHHHCCCeEEEEeChhHHHHHHhcCCCEEEEeCCCCCCCCccccccceEEEEEC
Confidence 3445444444332 1222233446678999999999998877666555667789888 786 34 356789999999
Q ss_pred CCCCCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
+++ |+++|.+||.+|+++|+.|...+
T Consensus 269 ~sk---n~eaA~~Fl~~fl~s~e~q~~~~ 294 (494)
T 1y4c_A 269 ASP---NKELAKEFLENYLLTDEGLEAVN 294 (494)
T ss_dssp TCS---CHHHHHHHHHHTTSSHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHcCHHHHHHHH
Confidence 999 99999999956999999998776
No 50
>4hs7_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: P33; 2.60A {Staphylococcus aureus subsp}
Probab=98.41 E-value=1.2e-06 Score=78.72 Aligned_cols=98 Identities=15% Similarity=0.044 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhHhh-hhcccchhhHHHHhhcCcEEEEEeccccHHHHHHc-CCCeEEE-ecCCC-----ceeeeeeEEEe
Q 040509 5 VGAIRSIQESSTKF-WYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKR-MSNVAVV-VPKSG-----ASLWADLWAIP 76 (226)
Q Consensus 5 ~~~~~~~~e~l~~~-~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~-~~~i~~v-~PkEG-----~~~w~D~~~Ip 76 (226)
+++++.+++..++. .+.....+...+.|.+|++.|.+.++......+.. +.++.++ +|..+ +..+.++|+|+
T Consensus 229 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~g~~~~P~~~g~~~~~~~g~~~~~I~ 308 (420)
T 4hs7_A 229 VKNAERLQKWYDKGYLPKAATHDVMIGLFKEGKVGQFVTGPWNINEYQETFGKDLGVTTLPTDGGKPMKPFLGVRGWYLS 308 (420)
T ss_dssp HHHHHHHHHHHHTTSSCSSCCHHHHHHHHHTTCEEEEEECSTTHHHHHHHHGGGEEEECCCBSSSSBCCCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCcccccchhhhhhccCceEEEEechHHHHHHHHhcCCceEEEEccCCCCCCCccccccceEEec
Confidence 34455555444332 12233445677899999999999887776655433 5678776 57543 45678999999
Q ss_pred CCCCCCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 77 AASRLHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 77 k~A~~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
++++ |+++|.+|| +|+++||.|..++
T Consensus 309 ~~sk---~~eaA~~fi-~~l~s~e~~~~~~ 334 (420)
T 4hs7_A 309 EYSK---HKYWAKDLM-LYITSKDTLQKYT 334 (420)
T ss_dssp TTCS---CHHHHHHHH-HHHTSHHHHHHHH
T ss_pred CCCC---CHHHHHHHH-HHHCCHHHHHHHH
Confidence 9999 999999999 9999999999886
No 51
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=98.38 E-value=2.5e-07 Score=76.53 Aligned_cols=70 Identities=6% Similarity=-0.012 Sum_probs=53.0
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCce-eeee-eEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhhc
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGAS-LWAD-LWAIPAASRLHKTNWRASQWSISIDPSMDRILL 104 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~-~w~D-~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa~ 104 (226)
+..+.+.+|++++|+.|.+++.. +.+..+++|.+|.. .+.+ +++|+++++ ++|++|| ||+++|+.|+.
T Consensus 154 ~~~~~~~~g~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~A~~Fi-~fl~s~e~q~~ 223 (237)
T 2hxw_A 154 SARKLFAQDQADAWITWIDWSKS----NPDIGTAVAIEKDLVVYRTFNVIAKEGAS-----KETQDFI-AYLSSKEAKEI 223 (237)
T ss_dssp TC--CTTTTTCSEEEEEHHHHHH----STTSSEEEECCTTTCCEEEEEEEECTTCC-----HHHHHHH-HHTTSHHHHHH
T ss_pred HHHHHHHcCCeeEEEEechhhhc----CCCceEEEecCCceeEEeeeeEEEccCCh-----HHHHHHH-HHHcCHHHHHH
Confidence 45556889999999999987643 23456677766654 4444 788988764 8999999 99999999997
Q ss_pred cc
Q 040509 105 PF 106 (226)
Q Consensus 105 ~~ 106 (226)
+.
T Consensus 224 ~~ 225 (237)
T 2hxw_A 224 FK 225 (237)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 52
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.36 E-value=3.7e-06 Score=75.56 Aligned_cols=99 Identities=11% Similarity=-0.035 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhHh-hhhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-CC----ceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTK-FWYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~-~~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-EG----~~~w~D~~~Ipk 77 (226)
.++++.+++..+. +.....+.++..+.|.+|++.|.+.++.........+.++.++ +|. +| ...+.++++|++
T Consensus 189 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~i~~ 268 (421)
T 1mh3_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 268 (421)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHhcCCCCCCCCchhHHHHHHCCCeeEEEeCchhHHHHhhcCCCeeEEeCCCCCCCCCCccccceEEEEEC
Confidence 3444444444332 1222233456778999999999998877666555567789988 786 33 456789999999
Q ss_pred CCCCCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
+++ |+++|.+||.+|+++|+.|...+
T Consensus 269 ~s~---~~e~A~~fi~~~l~s~e~~~~~~ 294 (421)
T 1mh3_A 269 ASP---NKELAKEFLENYLLTDEGLEAVN 294 (421)
T ss_dssp TCS---CHHHHHHHHHHTTSSHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHhcCHHHHHHHH
Confidence 999 99999999955999999998776
No 53
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*
Probab=98.35 E-value=3e-06 Score=77.64 Aligned_cols=99 Identities=11% Similarity=-0.035 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhHh-hhhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-CC----ceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTK-FWYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~-~~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-EG----~~~w~D~~~Ipk 77 (226)
.++++.+++..+. +.....+.++..+.|.+|++.|.+.++.........+.++.++ +|. +| ...+.++++|++
T Consensus 187 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~ 266 (461)
T 3csg_A 187 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 266 (461)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCEETTEECCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCCCCCchhHHHHHhcCCeeEEecCcchHHHHHhcCCceEEEeCCCCCCCCCCceecceEEEEeC
Confidence 4455555444332 1222223446778999999999988776665555557789988 786 33 356788999999
Q ss_pred CCCCCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
+++ |+++|.+||.+|+++|+.|...+
T Consensus 267 ~s~---~~e~A~~fl~~~l~s~e~q~~~~ 292 (461)
T 3csg_A 267 ASP---NKELAKEFLENYLLTDEGLEAVN 292 (461)
T ss_dssp TCT---THHHHHHHHHHTTSSHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHhcCHHHHHHHH
Confidence 999 99999999956999999998876
No 54
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Probab=98.35 E-value=1.5e-06 Score=76.40 Aligned_cols=75 Identities=11% Similarity=0.129 Sum_probs=61.2
Q ss_pred HHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC----CCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhh
Q 040509 28 LSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK----SGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRI 102 (226)
Q Consensus 28 ~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk----EG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~q 102 (226)
..+.+.+|++.|.++|+...........++.+. +|. +++..+.++++|+++++ |+++|.+|| +||++||.|
T Consensus 216 ~~~~f~~G~~am~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~I~~~s~---~~e~A~~fl-~~l~s~e~~ 291 (371)
T 3thi_A 216 RASWFAQGSGRAFIGYSESMMRMGDYAEQVRFKPISSSAGQDIPLFYSDVVSVNSKTA---HPELAKKLA-NVMASADTV 291 (371)
T ss_dssp HHHHHHHTBEEEEEEETTHHHHHGGGGGTEEEECCBSCSSCCCCEEEEEEEEEETTCS---CHHHHHHHH-HHHHSHHHH
T ss_pred HHHHHhCCeeeEEecchhhhhHhhhcccceEEEeCCCCCCCCCceeeeeEEEEcCCCC---CHHHHHHHH-HHHcCcHHH
Confidence 668899999999999987765554444577776 453 36788999999999999 999999999 999999994
Q ss_pred hccc
Q 040509 103 LLPF 106 (226)
Q Consensus 103 a~~~ 106 (226)
.+.+
T Consensus 292 ~~~~ 295 (371)
T 3thi_A 292 EQAL 295 (371)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 4443
No 55
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=98.35 E-value=3.3e-06 Score=78.12 Aligned_cols=80 Identities=14% Similarity=-0.024 Sum_probs=65.2
Q ss_pred chhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-CC----ceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCC
Q 040509 24 KLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLHKTNWRASQWSISIDP 97 (226)
Q Consensus 24 ~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-EG----~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll 97 (226)
+.++..+.|.+|++.|.+.++.........+.++.++ +|. +| ...+.++++|+++++ |+++|.+||.+|++
T Consensus 210 ~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~sk---~~eaA~~Fi~~~l~ 286 (463)
T 2xz3_A 210 DYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASP---NKELAKEFLENYLL 286 (463)
T ss_dssp CHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCEETTEECCCEEEEEEEEEBTTCT---THHHHHHHHHHTTS
T ss_pred CcchHHHHHHcCCeeEEecCccchhHHhhcCCCEEEEeCCCCCCCCCcccccceEEEEECCCC---CHHHHHHHHHHHhc
Confidence 3446678999999999998776665555567789888 786 44 356789999999999 99999999956999
Q ss_pred CHHhhhccc
Q 040509 98 SMDRILLPF 106 (226)
Q Consensus 98 ~Pe~qa~~~ 106 (226)
+||.|...+
T Consensus 287 s~e~q~~~~ 295 (463)
T 2xz3_A 287 TDEGLEAVN 295 (463)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999998775
No 56
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=98.34 E-value=2.9e-07 Score=74.18 Aligned_cols=77 Identities=8% Similarity=-0.059 Sum_probs=62.6
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhhcc
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRILLP 105 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa~~ 105 (226)
.+..+++.+|++.+|+.|.+++......+..+.+.+|++|...+...++|+++++ +++.|++|| ||+++++.|..+
T Consensus 147 ~~~~~~v~~G~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~---~~~~a~~fi-~~l~s~~~q~~~ 222 (231)
T 1atg_A 147 GQAHSQTASGAADLGFVALAQIIQAAAKIPGSHWFPPANYYEPIVQQAVITKSTA---EKANAEQFM-SWMKGPKAVAII 222 (231)
T ss_dssp HHHHHHHHTTSSSEEEEEGGGTCCTTSCCSSEEECCCGGGSCCCEEEEEEBTTCS---CHHHHHHHH-HHTTSHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEEHHHhhhccccccCeEEEeCcccCccceEeEEEecCCC---ChHHHHHHH-HHHcCHHHHHHH
Confidence 3667889999999999998876432222335788899988777777899999999 999999999 999999998866
Q ss_pred c
Q 040509 106 F 106 (226)
Q Consensus 106 ~ 106 (226)
.
T Consensus 223 ~ 223 (231)
T 1atg_A 223 K 223 (231)
T ss_dssp H
T ss_pred H
Confidence 3
No 57
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=98.33 E-value=3.8e-06 Score=77.39 Aligned_cols=99 Identities=11% Similarity=-0.035 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhHh-hhhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-CC----ceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTK-FWYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~-~~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-EG----~~~w~D~~~Ipk 77 (226)
.++++.+++..+. +.+...+.++..+.|.+|++.|.+.++.........+.++.++ +|. +| ...+.++++|++
T Consensus 189 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~ 268 (487)
T 1hsj_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 268 (487)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTSSEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCCBEEEEEEEBS
T ss_pred HHHHHHHHHHHHCCCCCCCCCchhHHHHHHcCCeeEEecCCcchhhHHhcCCCeeEecCCCCCCCCCCccccceEEEEEC
Confidence 3445544444332 1221223446678999999999998777665555567789988 786 33 346788999999
Q ss_pred CCCCCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
+++ |+++|.+||.+|+++|+.|...+
T Consensus 269 ~s~---~~eaA~~fl~~~l~s~e~~~~~~ 294 (487)
T 1hsj_A 269 ASP---NKELAKEFLENYLLTDEGLEAVN 294 (487)
T ss_dssp SCS---CHHHHHHHHHHTTTSHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHcCHHHHHHHH
Confidence 999 99999999956999999998876
No 58
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12}
Probab=98.32 E-value=4.7e-06 Score=80.45 Aligned_cols=98 Identities=11% Similarity=-0.070 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhHhh-hhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEe-cCC-----CceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTKF-WYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVV-PKS-----GASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~~-~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~-PkE-----G~~~w~D~~~Ipk 77 (226)
.++++.+++..+.. .....+.++..+.+.+|++.|.++|+.........+.++.++. |.. ++..+.++++|++
T Consensus 189 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~ 268 (658)
T 3f5f_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 268 (658)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCCCCCchHHHHHHHCCCEEEEEechhhhHHHHhcCCCEEEEECCCCCCCCCccccCceEEEEEC
Confidence 45555555554431 1222345577889999999999999988887777788899884 752 3467889999999
Q ss_pred CCCCCCCHHHHHHHHHh-hCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSIS-IDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~n-fll~Pe~qa~~~ 106 (226)
+++ |+++|.+|| + |+++|+.|....
T Consensus 269 ~sk---~~eaA~~Fl-~~~l~s~e~q~~~~ 294 (658)
T 3f5f_A 269 ASP---NKELAKEFL-ENYLLTDEGLEAVN 294 (658)
T ss_dssp TCT---THHHHHHHH-HHTTSSHHHHHHHH
T ss_pred CCC---CHHHHHHHH-HHHhcCHHHHHHHH
Confidence 999 999999999 9 999999999875
No 59
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=98.31 E-value=4.5e-06 Score=77.15 Aligned_cols=99 Identities=11% Similarity=-0.035 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhHh-hhhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-CC----ceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTK-FWYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~-~~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-EG----~~~w~D~~~Ipk 77 (226)
.++++.+++..+. +.+...+.++..+.|.+|++.|.++++.........+.++.++ +|. +| +..+.++++|++
T Consensus 204 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~ 283 (477)
T 2vgq_A 204 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 283 (477)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHCCCCCCCCCchHHHHHHHcCCeeEEecCCchHHHHhhcCCCeEEEeCCCCCCCCCcceecceEEEEEC
Confidence 3445554444332 1222223346678999999999998776665555557789888 786 33 356788999999
Q ss_pred CCCCCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
+++ |+++|.+||.+|+++|+.|..++
T Consensus 284 ~s~---~~eaA~~fl~~~l~s~e~q~~~~ 309 (477)
T 2vgq_A 284 ASP---NKELAKEFLENYLLTDEGLEAVN 309 (477)
T ss_dssp TCS---CHHHHHHHHHHTTSSHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHhcCHHHHHHHH
Confidence 999 99999999956999999998776
No 60
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A*
Probab=98.30 E-value=2e-06 Score=77.34 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=64.3
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecCC--C----ceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCC
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS--G----ASLWADLWAIPAASRLHKTNWRASQWSISIDPS 98 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~PkE--G----~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~ 98 (226)
.+..+.|.+|++.|.+.++.........+.++.++ +|.. | +..+.++++|+++++ |+++|.+|| +|+++
T Consensus 248 ~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~~~I~~~s~---~~e~A~~fi-~~l~s 323 (416)
T 2xd3_A 248 NLIQTQFQEGKTAAIIDGPWKAQAFKDAKVNYGVATIPTLPNGKEYAAFGGGKAWVIPQAVK---NLEASQKFV-DFLVA 323 (416)
T ss_dssp HHHHHHHHTTCCSEEEECGGGHHHHHHTTCCEEEECCCBCTTSCCCCCEEEEEEEECBTTCS---CHHHHHHHH-HHHHS
T ss_pred HHHHHHHhcCCeEEEecCcchhhhHHhcCCceEEEeCCCCCCCCcccccccceEEEEeCCCC---CHHHHHHHH-HHHcC
Confidence 45678899999999998877666655567789998 7863 4 346788999999999 999999999 99999
Q ss_pred HHhhhccc
Q 040509 99 MDRILLPF 106 (226)
Q Consensus 99 Pe~qa~~~ 106 (226)
|+.|...+
T Consensus 324 ~e~~~~~~ 331 (416)
T 2xd3_A 324 TEQQKVLY 331 (416)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998776
No 61
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=98.27 E-value=6.9e-06 Score=76.53 Aligned_cols=99 Identities=11% Similarity=-0.035 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhHh-hhhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-CC----ceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTK-FWYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~-~~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-EG----~~~w~D~~~Ipk 77 (226)
.++++.+++..+. +.+...+.++..+.|.+|++.|.+.++.........+.++.++ +|. +| +..+.++++|++
T Consensus 190 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~ 269 (509)
T 1r6z_P 190 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 269 (509)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHcCCeeEEEcCcchHHHHHhcCCceEEEeCCCCCCCCCcceecccEEEEEC
Confidence 3455555444332 1222223446678999999999998777665555567789888 786 33 356789999999
Q ss_pred CCCCCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
+++ |+++|.+||.+|+++||.|...+
T Consensus 270 ~sk---~~eaA~~fl~~~l~s~e~q~~~~ 295 (509)
T 1r6z_P 270 ASP---NKELAKEFLENYLLTDEGLEAVN 295 (509)
T ss_dssp TCT---THHHHHHHHHHTTTSHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHhcCHHHHHHHH
Confidence 999 99999999956999999998876
No 62
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=98.24 E-value=1.4e-05 Score=71.35 Aligned_cols=77 Identities=10% Similarity=0.050 Sum_probs=60.5
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHc-----CCCeEEE-ecC-CCc-eeeeeeEEEeCCCCCCCCHHHHHHHHHhhCC
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKR-----MSNVAVV-VPK-SGA-SLWADLWAIPAASRLHKTNWRASQWSISIDP 97 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~-----~~~i~~v-~Pk-EG~-~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll 97 (226)
.+..+.|.+|++.|.+.++......... +.++.++ +|. +|. ..+.++++|+++++ |+++|.+|| +|++
T Consensus 225 ~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~i~~~s~---~~e~A~~fi-~~l~ 300 (400)
T 2b3f_A 225 QQAVDRVVQGKAAFNIMGDWAAGYMTTTLKLKPGTDFAWAPSPGTQGVFMMLSDSFGLPKGAK---NRQNAINWL-RLVG 300 (400)
T ss_dssp HHHHHHHHHTSCSEEECCTHHHHHHHHTTCCCBTTTBEEEECTTCTTEEEEECEEECCBTTCT---THHHHHHHH-HHHT
T ss_pred HHHHHHHhCCceEEEEeccccHhhhhhhhcCCCCCCeEEEeCCCCCCceecccceEEEeCCCC---CHHHHHHHH-HHHc
Confidence 4667889999999998765444333332 4678887 785 353 35778999999999 999999999 9999
Q ss_pred CHHhhhccc
Q 040509 98 SMDRILLPF 106 (226)
Q Consensus 98 ~Pe~qa~~~ 106 (226)
+|+.|...+
T Consensus 301 s~e~q~~~~ 309 (400)
T 2b3f_A 301 SKEGQDTSN 309 (400)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999998775
No 63
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A
Probab=98.20 E-value=2.8e-05 Score=69.36 Aligned_cols=77 Identities=10% Similarity=0.072 Sum_probs=57.9
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHH--cCCCeEEE-ecCC----C---ceeeeeeEEEeCCCCCCCCHHHHHHHHHhh
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVK--RMSNVAVV-VPKS----G---ASLWADLWAIPAASRLHKTNWRASQWSISI 95 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~--~~~~i~~v-~PkE----G---~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nf 95 (226)
.+..+.|.+|++.|.+.+++-...... .+.++.++ +|.. | ...+.++++|+++++ |+++|.+|| +|
T Consensus 246 ~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~I~~~s~---~~e~A~~fl-~~ 321 (415)
T 3oo8_A 246 QDAAKALENKQAGMMFQGSNQVAANYSAKNLPDLDFFVFPAINPQYGTDYMDAPTDGFILPKKGK---NAAAAKKVL-QY 321 (415)
T ss_dssp HHHHHHHHTTSEEEEEEEHHHHHHHSCTTTGGGEEEECCCBSSTTTTTCEEECCCEEEECBTTCS---CHHHHHHHH-HH
T ss_pred HHHHHHHHcCCeeEEEcccHhhhhcCCccccCCceEEeCCCCCCCCCCccccccCceEEEECCCC---CHHHHHHHH-HH
Confidence 466789999999988876622222222 24567765 3542 2 255789999999999 999999999 99
Q ss_pred CCCHHhhhccc
Q 040509 96 DPSMDRILLPF 106 (226)
Q Consensus 96 ll~Pe~qa~~~ 106 (226)
+++||.|..+.
T Consensus 322 l~s~e~q~~~~ 332 (415)
T 3oo8_A 322 IGTAEAEAAFL 332 (415)
T ss_dssp HTSHHHHHHHH
T ss_pred HhCHHHHHHHH
Confidence 99999999886
No 64
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera; MCSG, pcsep, MBP-fused target, structural genomics; HET: MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A* 3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A* 3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A* 2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ...
Probab=98.16 E-value=2.1e-05 Score=73.52 Aligned_cols=79 Identities=15% Similarity=-0.030 Sum_probs=64.6
Q ss_pred chhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEe-cC-----CCceeeeeeEEEeCCCCCCCCHHHHHHHHHh-hC
Q 040509 24 KLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVV-PK-----SGASLWADLWAIPAASRLHKTNWRASQWSIS-ID 96 (226)
Q Consensus 24 ~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~-Pk-----EG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~n-fl 96 (226)
+.....+.|.+|++.|.+.|+.........+.++.+.. |. .++..+.++++|+++++ |+++|.+|| . |+
T Consensus 213 ~~~~~~~~F~~Gk~Am~~~g~w~~~~~~~~~~~~gv~plP~~~g~~~~~~~g~~~~~I~~~Sk---n~eaA~~Fl-~~~l 288 (487)
T 4exk_A 213 DYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASP---NKELAKEFL-ENYL 288 (487)
T ss_dssp CHHHHHHHHHTTCEEEEEECGGGHHHHHHSSCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCT---THHHHHHHH-HHTT
T ss_pred chhhHHHhhhcCCEEEEEeCHHHHHHHHhcCCCeeEEEeccCCCCCCcceecceEEEEECCCC---CHHHHHHHH-HHHh
Confidence 33466788999999999999888877777788888763 32 23457889999999999 999999999 7 88
Q ss_pred CCHHhhhccc
Q 040509 97 PSMDRILLPF 106 (226)
Q Consensus 97 l~Pe~qa~~~ 106 (226)
.+|+.|....
T Consensus 289 ~s~e~q~~~~ 298 (487)
T 4exk_A 289 LTDEGLEAVN 298 (487)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999998875
No 65
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=98.13 E-value=1.8e-05 Score=77.71 Aligned_cols=98 Identities=11% Similarity=-0.054 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhHhhhh-cccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-----CCceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTKFWY-GVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~~~~-~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-----EG~~~w~D~~~Ipk 77 (226)
.++++.+++..+.... ...+.+...+.|.+|++.|.+.|+.........+.++.+. +|. .++..+.++++|++
T Consensus 190 ~~al~~l~~l~~~g~~~~~~~~~~~~~~F~~Gk~Am~~~g~w~~~~~~~~~~~~gva~lP~~~g~~~~~~~g~~~~~I~~ 269 (715)
T 4h1g_A 190 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 269 (715)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHSSCCEEEECCCEETTEECCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCcchhhhhHHHHhhcCceEEEEecHHHHHHHHhcCCCeEEEEcCCCCCCCCcceeeeEEEEEEC
Confidence 3444444444433221 2223446678899999999999888777777777888876 452 34567889999999
Q ss_pred CCCCCCCHHHHHHHHHh-hCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSIS-IDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~n-fll~Pe~qa~~~ 106 (226)
+++ |+++|.+|| + |+.+|+.|....
T Consensus 270 ~Sk---n~eaA~~Fl-~~~l~s~e~q~~~~ 295 (715)
T 4h1g_A 270 ASP---NKELAKEFL-ENYLLTDEGLEAVN 295 (715)
T ss_dssp TCS---CHHHHHHHH-HHTTSSHHHHHHHH
T ss_pred CCC---cHHHHHHHH-HHHhCCHHHHHHHH
Confidence 999 999999999 7 789999998775
No 66
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=98.12 E-value=7.9e-06 Score=75.57 Aligned_cols=99 Identities=11% Similarity=-0.035 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhHh-hhhcccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-CC----ceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTK-FWYGVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~-~~~~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-EG----~~~w~D~~~Ipk 77 (226)
.++++.+++..+. +.....+.++..+.|.+|++.|.+.++.........+.++.++ +|. +| +..+.+.++|++
T Consensus 189 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~ 268 (465)
T 2zxt_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 268 (465)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHHTCCSBEEECTTTHHHHHHHTCCCCEECCCCGGGSCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCCCCCcchHHHHHHCCCeeEEEeCCchHHHHhhcCCceEEEeCCCCCCCCCccccccceEEEEC
Confidence 3445544444332 1221223346678899999999988776665555557788888 786 22 456789999999
Q ss_pred CCCCCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
+++ |+++|.+||.+|+++|+.|....
T Consensus 269 ~sk---~~eaA~~Fi~~~l~s~e~q~~~~ 294 (465)
T 2zxt_A 269 ASP---NKELAKEFLENYLLTDEGLEAVN 294 (465)
T ss_dssp TCS---CHHHHHHHHHHTTSSHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHcCHHHHHHHH
Confidence 999 99999999956999999998775
No 67
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=98.12 E-value=2e-05 Score=75.36 Aligned_cols=79 Identities=14% Similarity=-0.042 Sum_probs=65.3
Q ss_pred chhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ec-----CCCceeeeeeEEEeCCCCCCCCHHHHHHHHHh-hC
Q 040509 24 KLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VP-----KSGASLWADLWAIPAASRLHKTNWRASQWSIS-ID 96 (226)
Q Consensus 24 ~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~P-----kEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~n-fl 96 (226)
+.+...+.|.+|++.|.+.++.........+.++.+. +| +.++..+.++++|+++++ |+++|.+|| + |+
T Consensus 223 ~~~~~~~~f~~Gk~Am~~~g~w~~~~~~~~~~~~gv~~lP~~~g~~~~~~~g~~~~~I~~~Sk---n~eaA~~Fl-~~~l 298 (602)
T 4b3n_A 223 DYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGIDAASP---NKELAKEFL-ENYL 298 (602)
T ss_dssp CHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCEETTEECCCEEEEEEEEEBTTCT---THHHHHHHH-HHTT
T ss_pred chhhHHHHhhcCceEEEEecHHHHHHHHhcCCCeEEEEcCCCCCCCCcceEeeEEEEEECCCC---CHHHHHHHH-HHHh
Confidence 3446677899999999999888877777778888876 45 234567889999999999 999999999 7 78
Q ss_pred CCHHhhhccc
Q 040509 97 PSMDRILLPF 106 (226)
Q Consensus 97 l~Pe~qa~~~ 106 (226)
.+++.|....
T Consensus 299 ~s~e~~~~~~ 308 (602)
T 4b3n_A 299 LTDEGLEAVN 308 (602)
T ss_dssp SSHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 8999998775
No 68
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=98.12 E-value=2.8e-06 Score=73.14 Aligned_cols=72 Identities=15% Similarity=-0.013 Sum_probs=60.7
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE--ecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhh
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV--VPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMDRIL 103 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v--~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa 103 (226)
.+..+.+.+||+++|+.|..++.. .+.++++ +|+||.......++|++++. +++|++|+ +|+++|+.|.
T Consensus 173 ~~~~~~v~~Gead~giv~~s~a~~----~~~v~~v~~~P~~~~~~i~~~~ai~k~~~----~~~A~~Fi-~fl~S~eaq~ 243 (253)
T 3gzg_A 173 RAALMLVSRGEAPLGIVYGSDARA----DAKVRVVATFPDDSHDAIVYPVAALKNSN----NPATAAFV-SWLGSKPAKA 243 (253)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHH----CTTEEEEEECCGGGSCCEEEEEEECTTCC----CTTHHHHH-HHTTSHHHHH
T ss_pred HHHHHHHHcCCCCEEEEEhhcccc----CCCceEEEECCcccCceeEEEEEEECCCC----hHHHHHHH-HHHcCHHHHH
Confidence 366788999999999999988763 3456665 79999999999999999863 59999999 9999999998
Q ss_pred ccc
Q 040509 104 LPF 106 (226)
Q Consensus 104 ~~~ 106 (226)
.+.
T Consensus 244 i~~ 246 (253)
T 3gzg_A 244 IFA 246 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 69
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=98.08 E-value=1.3e-05 Score=71.56 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=59.8
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcC--CCeEEE-ecC--CCce--ee-ee-eEEEeCCCCCCCCHHHHHHHHHhhC
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRM--SNVAVV-VPK--SGAS--LW-AD-LWAIPAASRLHKTNWRASQWSISID 96 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~--~~i~~v-~Pk--EG~~--~w-~D-~~~Ipk~A~~~~n~e~A~kFI~nfl 96 (226)
.+..+.|.+|++.|.+.++.........+ .++.++ +|. +|.. +. .+ +++|+++++ |+++|.+|| +|+
T Consensus 240 ~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~g~~~~~~i~~~s~---~~e~A~~fi-~~l 315 (401)
T 2heu_A 240 TDVIGAFARGDVLMTPNGSWAITAINEQKPNFKIGTFMIPGKEKGQSLTVGAGDLAWSISATTK---HPKEANAFV-EYM 315 (401)
T ss_dssp HHHHHHHHTTSSSEEEEETTHHHHHHTTCCSSCEEEECBCCSSTTCCBEEECBSSEEEEBTTCS---CHHHHHHHH-HHH
T ss_pred HHHHHHHHcCCceEEecCcccHHHHHhhCcccceeEEECCCCCCCCcccccCCcceEEEECCCC---CHHHHHHHH-HHH
Confidence 45678899999999998777655555433 367777 675 4433 22 46 499999999 999999999 999
Q ss_pred CCHHhhhccc
Q 040509 97 PSMDRILLPF 106 (226)
Q Consensus 97 l~Pe~qa~~~ 106 (226)
++|+.|...+
T Consensus 316 ~s~e~~~~~~ 325 (401)
T 2heu_A 316 TRPEVMQKYY 325 (401)
T ss_dssp TSHHHHHHHH
T ss_pred cChHHHHHHH
Confidence 9999998775
No 70
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=98.04 E-value=2.7e-06 Score=73.60 Aligned_cols=69 Identities=9% Similarity=-0.063 Sum_probs=54.8
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEE-EecCCCc--------------------------eeeeeeEEEeCC
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAV-VVPKSGA--------------------------SLWADLWAIPAA 78 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~-v~PkEG~--------------------------~~w~D~~~Ipk~ 78 (226)
.+..+.+.+||+++|+.|.+++.. .+ +.+ .+|+++. ..+.++++|+++
T Consensus 189 ~~~~~~v~~Ge~d~gi~~~s~a~~---~~--~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~k~ 263 (292)
T 3cfz_A 189 TDLLAPLEAGAFDYLFIYKSVANQ---HH--LKYIELPKEINLGYYEYADTYKKVALKIIAKNKTINAKPIVYGMTVPTN 263 (292)
T ss_dssp GGGHHHHHTTSSSEEEEEHHHHHH---TT--CEEECCCTTTSSCCGGGHHHHTTEEEEEGGGTEEEECCCCEEEEECCTT
T ss_pred HHHHHHHHCCCCCEEEEEehhhhh---CC--CCEEECChhhcccCccccchhhceeeeeccccccccCCceeEEEEeecC
Confidence 367889999999999999998765 22 334 3677652 236799999999
Q ss_pred CCCCCCHHHHHHHHHhhCCCHHhhhcc
Q 040509 79 SRLHKTNWRASQWSISIDPSMDRILLP 105 (226)
Q Consensus 79 A~~~~n~e~A~kFI~nfll~Pe~qa~~ 105 (226)
++ |+++|++|| |||+ +.|..+
T Consensus 264 a~---~~~~A~~Fi-~fl~--e~q~i~ 284 (292)
T 3cfz_A 264 AP---HKKEAIEFV-KFVL--GHPEVL 284 (292)
T ss_dssp CT---THHHHHHHH-HHHH--HCTHHH
T ss_pred CC---CHHHHHHHH-HHHH--HHHHHH
Confidence 99 999999999 9999 777644
No 71
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=98.03 E-value=3.8e-06 Score=74.81 Aligned_cols=78 Identities=13% Similarity=0.015 Sum_probs=58.5
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHH-HcCCCeEEEe-c---CCCc--eeee-----eeEEEeCCC-CCCCCHHHHHHH
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAV-KRMSNVAVVV-P---KSGA--SLWA-----DLWAIPAAS-RLHKTNWRASQW 91 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~-~~~~~i~~v~-P---kEG~--~~w~-----D~~~Ipk~A-~~~~n~e~A~kF 91 (226)
..+..+.|.+|++.|.+.|+....... ..+.++++.. | .+|. ..++ ++++|++++ + |+++|.+|
T Consensus 230 ~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~i~~~s~~---~~e~A~~f 306 (405)
T 3i3v_A 230 SDSMTTQFNTEEAAVQSAMSSALAKVPEKVAGHTEVGGWPLADGAAHDGPTVIRAYTLIGFWISPNGVR---KIEQVEKF 306 (405)
T ss_dssp HHHHHHHHHTTSEEEEECCHHHHTTSCHHHHHTEEEECBCBCTTCSSSSCEEEEESCSSEEEECHHHHT---THHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEeCcEehhhhhhccccCCcEEeCCCCCCCCCCCCceEeccCceEEEEeCCchh---hHHHHHHH
Confidence 346788999999999998876554433 2234566654 4 2333 3333 669999999 8 99999999
Q ss_pred HHhhCCCHHhhhccc
Q 040509 92 SISIDPSMDRILLPF 106 (226)
Q Consensus 92 I~nfll~Pe~qa~~~ 106 (226)
| +|+++||.|...+
T Consensus 307 l-~~l~s~e~q~~~~ 320 (405)
T 3i3v_A 307 L-RFMYRPDVVARFV 320 (405)
T ss_dssp H-HHHTSHHHHHHHH
T ss_pred H-HHHhCHHHHHHHH
Confidence 9 9999999999886
No 72
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=98.03 E-value=7.8e-06 Score=80.91 Aligned_cols=78 Identities=15% Similarity=-0.004 Sum_probs=60.6
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEE-EecC-CC----ceeeeeeEEEeCCCCCCCCHHHHHHHHHh-hCC
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAV-VVPK-SG----ASLWADLWAIPAASRLHKTNWRASQWSIS-IDP 97 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~-v~Pk-EG----~~~w~D~~~Ipk~A~~~~n~e~A~kFI~n-fll 97 (226)
.++..+.|.+|++.|.+.|+.........+.++.+ .+|. +| +..+.++++|+++++ |+++|.+|| . |++
T Consensus 214 ~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~g~~~~P~~~g~~~~~~~g~~~~~I~~~sk---~~eaA~~Fi-~~fl~ 289 (805)
T 2nvu_B 214 YSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASP---NKELAKEFL-ENYLL 289 (805)
T ss_dssp HHHHHHHHTTTCEEEEEECTTTTTTTTTTTCCCCCBCCCBCSSSCCCCCEEEEEEEEBSSCS---TTHHHHHHH-HTTTS
T ss_pred HHHHHHHHHCCCEEEEEeChhhHHHHhhcCCCeEEEECCCCCCCCccceecceEEEEECCCC---CHHHHHHHH-HHHhc
Confidence 34567889999999999876554333334556766 3575 33 457889999999999 999999999 8 999
Q ss_pred CHHhhhccc
Q 040509 98 SMDRILLPF 106 (226)
Q Consensus 98 ~Pe~qa~~~ 106 (226)
+|+.|....
T Consensus 290 s~e~q~~~~ 298 (805)
T 2nvu_B 290 TDEGLEAVN 298 (805)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999998765
No 73
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=97.92 E-value=1.6e-05 Score=71.57 Aligned_cols=77 Identities=16% Similarity=-0.049 Sum_probs=59.6
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecCC-CceeeeeeEEEeCC--CCCCCCHHHHHHHHHhhCCCHH
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-GASLWADLWAIPAA--SRLHKTNWRASQWSISIDPSMD 100 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~PkE-G~~~w~D~~~Ipk~--A~~~~n~e~A~kFI~nfll~Pe 100 (226)
..+..+.|.+|++.|.+.++........ ..++.+. +|.. +...+..+++|+++ ++ |+++|.+|| +|+++||
T Consensus 262 ~~~~~~~f~~G~~am~~~g~w~~~~~~~-~~~~~~~~~P~~~~~~~~~~~~~i~~~~~s~---~~e~A~~fl-~~l~s~e 336 (430)
T 2w7y_A 262 ANAYSKDFQEGKSAVFFNGVWASGEMSK-NPSLAPGIYPAGVAISSSGGGITISSKMSEA---KQKLALEFL-KYMTSDD 336 (430)
T ss_dssp HHHHHHHHHTTSEEEECCCGGGHHHHTT-STTEEEECBGGGEEEEECCCCEEEBSSSCHH---HHHHHHHHH-HHHTSHH
T ss_pred hHHHHHHHhcCCeEEEEcChhhhhhhhc-CCCCceeccCCCcccccCCcceEEecCCCcc---cHHHHHHHH-HHhcCHH
Confidence 3466788999999999877655544433 3678875 6854 33456788999997 67 999999999 9999999
Q ss_pred hhhccc
Q 040509 101 RILLPF 106 (226)
Q Consensus 101 ~qa~~~ 106 (226)
.|...+
T Consensus 337 ~~~~~~ 342 (430)
T 2w7y_A 337 VQKVIF 342 (430)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998775
No 74
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Probab=97.90 E-value=4.9e-05 Score=68.06 Aligned_cols=74 Identities=8% Similarity=-0.041 Sum_probs=56.6
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHc-----CCCeEEE-ecC--CCc----eeeeeeEEEeCCCCCCCCHHHHHHHHHh
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKR-----MSNVAVV-VPK--SGA----SLWADLWAIPAASRLHKTNWRASQWSIS 94 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~-----~~~i~~v-~Pk--EG~----~~w~D~~~Ipk~A~~~~n~e~A~kFI~n 94 (226)
+..+.|.+|++.|.+.++......... +.++.++ +|. +|. ....++++|+++++ |+++|.+|| +
T Consensus 234 ~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~~~i~~~s~---~~e~A~~fl-~ 309 (412)
T 2z8f_A 234 SFDASIKDGSLIGTVAAAWEAPLFMTSSGGTGSGEWQVAQLGDWFGNAGKTGPDGGSAVAVLKNSK---HPKEAMEFL-D 309 (412)
T ss_dssp HHHHHHHTTCBCEEEEEGGGHHHHHHHHTTTTTTTEEEEECCBCSSCTTCBCBCCCEEEEEBTTCS---CHHHHHHHH-H
T ss_pred HHHHHHhCCCEEEEecccchhhHHhhhCCcCcccceEEEcCCCCCCCCCccccCCcceEEEeCCCC---CHHHHHHHH-H
Confidence 566789999999998766554433322 3478886 686 242 45678999999999 999999999 9
Q ss_pred hCCCH-Hhhhc
Q 040509 95 IDPSM-DRILL 104 (226)
Q Consensus 95 fll~P-e~qa~ 104 (226)
|+++| +.|..
T Consensus 310 ~l~s~~e~~~~ 320 (412)
T 2z8f_A 310 WFNTQVPDLVS 320 (412)
T ss_dssp HHTTCHHHHHH
T ss_pred HHccCHHHHHh
Confidence 99998 87764
No 75
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=97.69 E-value=0.00025 Score=67.26 Aligned_cols=99 Identities=11% Similarity=-0.058 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhHhhhh-cccchhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC-----CCceeeeeeEEEeC
Q 040509 5 VGAIRSIQESSTKFWY-GVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPA 77 (226)
Q Consensus 5 ~~~~~~~~e~l~~~~~-~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk-----EG~~~w~D~~~Ipk 77 (226)
.++++.+++..++... ...+.....+.|.+|++.|.+.++-........+.++.+. +|. .+...+...++|++
T Consensus 189 ~~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~gv~~~P~~~g~~~~~~~g~~~~~i~~ 268 (694)
T 3dm0_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINA 268 (694)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCEETTEECCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCCCCChhhHHHHHhCCCeeEEEcCccchhhHhhcCCcceeecCCCCCCCCCCceeeeEEEEEEc
Confidence 3445555544433211 1223345567899999999988766555555556677765 352 23456778899999
Q ss_pred CCCCCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 78 ASRLHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 78 ~A~~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
+++ |+++|.+||.+|+++++.+....
T Consensus 269 ~s~---~~~~A~~f~~~~~~~~~~~~~~~ 294 (694)
T 3dm0_A 269 ASP---NKELAKEFLENYLLTDEGLEAVN 294 (694)
T ss_dssp TCS---CHHHHHHHHHHTTTSHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHhcCHHHHHHHH
Confidence 999 99999999933999999988664
No 76
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=97.57 E-value=0.00019 Score=65.28 Aligned_cols=78 Identities=13% Similarity=0.008 Sum_probs=58.1
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcC-----CCeEEE-ecC--CC--c-----eeeeeeEEEeCCCCCCCCHHHHH
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRM-----SNVAVV-VPK--SG--A-----SLWADLWAIPAASRLHKTNWRAS 89 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~-----~~i~~v-~Pk--EG--~-----~~w~D~~~Ipk~A~~~~n~e~A~ 89 (226)
.++..+.|.+|++.|.+.++-......... .++.++ +|. .| . ..+..+++|+++++ |+++|.
T Consensus 284 ~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~i~~~sk---~~e~A~ 360 (456)
T 4g68_A 284 RDEATAEFNQGKAAMYFGGNFDAAAFVSDPSSLVKGKIEAVRFPTIEGGKGDPTEYIGGTVGALMVSANSK---YKDEAV 360 (456)
T ss_dssp HHHHHHHHHTTCCSEEEEEGGGHHHHHTSTTCSCTTTEEEECCCBCTTCCSCTTCEEEEEEEEEEEBTTCS---CHHHHH
T ss_pred hHHHHhhhccCCEEEEEeCchHHHHHHhccccccCCceEEEecCccCCCCCCcceeecccceeeeecCCCc---CHHHHH
Confidence 346778999999998887766555444332 367766 453 11 1 12567899999999 999999
Q ss_pred HHHHhhCCCHHhhhccc
Q 040509 90 QWSISIDPSMDRILLPF 106 (226)
Q Consensus 90 kFI~nfll~Pe~qa~~~ 106 (226)
+|| +||.+|+.|....
T Consensus 361 ~fl-~~l~s~e~~~~~~ 376 (456)
T 4g68_A 361 RAA-KYLAKQLSDMDYL 376 (456)
T ss_dssp HHH-HHHHHHHHHHHHH
T ss_pred HHH-HHHCCHHHHHHHH
Confidence 999 9999999998775
No 77
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=97.48 E-value=0.00027 Score=65.70 Aligned_cols=69 Identities=13% Similarity=0.046 Sum_probs=51.0
Q ss_pred hhcC---cEEEEEeccccHHHHHHcCCCeEEEe-cCC-------------CceeeeeeEEEeCCCCCCCCHHHHHHHHHh
Q 040509 32 FGIR---DVWVAVGWSSDVLPAVKRMSNVAVVV-PKS-------------GASLWADLWAIPAASRLHKTNWRASQWSIS 94 (226)
Q Consensus 32 l~~G---Ev~va~~wsgd~~~a~~~~~~i~~v~-PkE-------------G~~~w~D~~~Ipk~A~~~~n~e~A~kFI~n 94 (226)
+.+| .+.|..+|+....... .+.++.++- |+. ++.+..++++|+++|+ |+++|.+|| +
T Consensus 297 ~~~G~~a~~a~~~~w~~~~~~~~-~~~~~~~~p~p~~~~g~~~~~~~~~~~~~~~~~~~~I~~~sk---~~e~A~~fl-~ 371 (535)
T 3omb_A 297 ISDGKTAKTGVVFGWSPSDNFGK-LKDQYIAMPVPSAPGVSPDQTVWDGSSSELSPAGLSISSHAA---NKDAALKLA-N 371 (535)
T ss_dssp HTTSSSCCEEEEEESCHHHHHGG-GGGGEEECCCCBCTTCCGGGCCCCCCCSSEEEEEEEEBTTCT---THHHHHHHH-H
T ss_pred hcCCCcceEEEEeecccccccCC-CcccEEEecCccCCCCCcccceeccccccccCCeEEEECCCC---CHHHHHHHH-H
Confidence 4677 7888888986554322 244555553 432 2345678999999999 999999999 9
Q ss_pred hCCCHHhhhcc
Q 040509 95 IDPSMDRILLP 105 (226)
Q Consensus 95 fll~Pe~qa~~ 105 (226)
|+++||.|..+
T Consensus 372 ~l~s~e~q~~~ 382 (535)
T 3omb_A 372 LLYSEKYSVQQ 382 (535)
T ss_dssp HHTSHHHHHHH
T ss_pred HhcCHHHHHHH
Confidence 99999999865
No 78
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=97.38 E-value=0.0011 Score=59.02 Aligned_cols=76 Identities=14% Similarity=-0.013 Sum_probs=57.1
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHc----CCCeEEE-ecC--CC---ceeeeeeEEEeCCCCCCCCHHHHHHHHHhhC
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKR----MSNVAVV-VPK--SG---ASLWADLWAIPAASRLHKTNWRASQWSISID 96 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~----~~~i~~v-~Pk--EG---~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfl 96 (226)
+..+.|.+|++.|.+.|+......... +.++.++ +|. .| +.....+++|+++++ |+++|.+|| +|+
T Consensus 240 ~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~gg~~~~i~~~s~---~~e~A~~fl-~~l 315 (409)
T 1eu8_A 240 PVRLMFQQGNAAFERNWPYAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSD---NKALAWEFV-KFV 315 (409)
T ss_dssp HHHHHHHTTCEEEEEECTHHHHHHTSTTCTTTTCEEEECCCBCTTSCCCCBEEEEEEEEBTTCS---CHHHHHHHH-HHH
T ss_pred HHHHHHhCCCEEEEecCHHHhhccCCCCccccCceEEEeCCCCCCCCcccccCceeEEecCCCC---CHHHHHHHH-HHH
Confidence 567789999999999877654444322 2367776 463 22 234456899999999 999999999 999
Q ss_pred CCHHhhhccc
Q 040509 97 PSMDRILLPF 106 (226)
Q Consensus 97 l~Pe~qa~~~ 106 (226)
.+|+.|....
T Consensus 316 ~s~e~~~~~~ 325 (409)
T 1eu8_A 316 ESYSVQKGFA 325 (409)
T ss_dssp TSHHHHHHHH
T ss_pred hCHHHHHHHH
Confidence 9999988765
No 79
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A
Probab=97.37 E-value=0.0011 Score=59.93 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=53.5
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHH----cCCCeE--EEe-cC--CC--------ceeeeeeEEEeCCCCCCCCHHH
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVK----RMSNVA--VVV-PK--SG--------ASLWADLWAIPAASRLHKTNWR 87 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~----~~~~i~--~v~-Pk--EG--------~~~w~D~~~Ipk~A~~~~n~e~ 87 (226)
.++..+.+.+|.+.+..+|......... ..+... .+. |. +| +......++|+++|+ |+++
T Consensus 252 ~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~I~~~sk---~~e~ 328 (490)
T 3a09_A 252 ARSREQTFGNNIGGMTHDWFASTALFNDALSKNIPGFKLVPMAPPINSKGQRWEEDARQIPRPDGWAITATNK---NPVE 328 (490)
T ss_dssp GGHHHHHHHTTCEEEEEEEHHHHHHHHHHTTTTSTTCCEEEECCCBCTTSCCCBCCCCCSSCSCEEEEBTTCS---CHHH
T ss_pred HHHHHHHHHCCCEEEEEechHHHHHHHHHHhhcCCCceEEeeccCcCCCCcccCCCccccccceEEEEECCCC---CHHH
Confidence 3467788999999998887766544332 122232 222 21 11 122346799999999 9999
Q ss_pred HHHHHHhhCCCHHhhhcc
Q 040509 88 ASQWSISIDPSMDRILLP 105 (226)
Q Consensus 88 A~kFI~nfll~Pe~qa~~ 105 (226)
|.+|| +|+.+||.|...
T Consensus 329 A~~fl-~~l~s~e~~~l~ 345 (490)
T 3a09_A 329 TIKLF-DFYFGPKGRELS 345 (490)
T ss_dssp HHHHH-HHTTSHHHHHHH
T ss_pred HHHHH-HHhCCHHHHHHH
Confidence 99999 999999998754
No 80
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=97.35 E-value=0.0029 Score=55.65 Aligned_cols=98 Identities=14% Similarity=-0.012 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhHhhhh-cccchhhHHHHhhcCcEEEEEeccccHHHHHHc-CCCeEEE-ecC--C------CceeeeeeE
Q 040509 5 VGAIRSIQESSTKFWY-GVVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKR-MSNVAVV-VPK--S------GASLWADLW 73 (226)
Q Consensus 5 ~~~~~~~~e~l~~~~~-~~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~-~~~i~~v-~Pk--E------G~~~w~D~~ 73 (226)
.++++.+++..+.... .....++..+.+.+|++.|.+.++......... +.++.+. +|. . ++.+.-.++
T Consensus 212 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~g~~~ 291 (419)
T 4aq4_A 212 VKHIAMLEEMNKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAPQNAIIGGASL 291 (419)
T ss_dssp HHHHHHHHHHHHHTSBCCCCSSSHHHHHHHTTSEEEEEEEGGGHHHHHHHCCSCEEEEECCBCTTCTTCCCCCCCEEEEE
T ss_pred HHHHHHHHHHHhcCCCCcccchhhHHHhhhcCceEEEEeChHHHHHHHhhCCCceEEEeccCCCCCCCCCcceeecCceE
Confidence 3455555444433211 122334677899999999999887776555433 4466654 342 1 123344567
Q ss_pred EEeCC--CCCCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 74 AIPAA--SRLHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 74 ~Ipk~--A~~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
+|+++ ++ |+++|.+|| +|+++||.|...+
T Consensus 292 ~i~~~~~~~---~~~aA~~fl-~~l~s~e~~~~~~ 322 (419)
T 4aq4_A 292 WVMQGKDKE---TYTGVAKFL-DFLAKPENAAEWH 322 (419)
T ss_dssp EEESSCCHH---HHHHHHHHH-HHHTSHHHHHHHH
T ss_pred EEEecchhh---hHHHHHHHH-HHhCCHHHHHHHH
Confidence 78754 45 899999999 9999999999876
No 81
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Probab=97.29 E-value=0.00073 Score=60.05 Aligned_cols=73 Identities=10% Similarity=0.051 Sum_probs=53.3
Q ss_pred HHHhhcCcEEEEEeccccHHHHHH---cCCCeEEE-ecC-CCc---e---eeeeeEEEeCCCCCCCCHHHHHHHHHhhCC
Q 040509 29 SEAFGIRDVWVAVGWSSDVLPAVK---RMSNVAVV-VPK-SGA---S---LWADLWAIPAASRLHKTNWRASQWSISIDP 97 (226)
Q Consensus 29 ~~~l~~GEv~va~~wsgd~~~a~~---~~~~i~~v-~Pk-EG~---~---~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll 97 (226)
.+.+.+|++.+.+.|+........ .+.++.++ +|. +|. . ....+++|+++++ |+++|.+|| +|++
T Consensus 233 ~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~i~~~s~---~~e~A~~fl-~~l~ 308 (408)
T 2uvj_A 233 MKPWINGEWAGTYMWNSTITKYSDNLTKPAKLVLGPYPMLPGAKDAGLFFKPAQMLSIGKSTK---HPQESAMLI-NFLL 308 (408)
T ss_dssp SHHHHTTSBCEEEEEGGGTHHHHTTSCTTCCEEECCCCCCTTCSCCCCCEEEEEEEEEBTTCS---CHHHHHHHH-HHHH
T ss_pred CCceeccceeEEEeecchHHHhhccccCCCceEEEeCCcCCCCCCCceeeccceEEEEECCCC---CHHHHHHHH-HHHc
Confidence 467999999999999876655443 24567777 575 221 1 1256899999999 999999999 9999
Q ss_pred CHHhhhcc
Q 040509 98 SMDRILLP 105 (226)
Q Consensus 98 ~Pe~qa~~ 105 (226)
+++.+.+.
T Consensus 309 s~~~~~~~ 316 (408)
T 2uvj_A 309 NSKEGVEA 316 (408)
T ss_dssp TSHHHHHH
T ss_pred CCHHHHHH
Confidence 86554433
No 82
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=97.06 E-value=0.00047 Score=62.56 Aligned_cols=71 Identities=13% Similarity=0.004 Sum_probs=55.6
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecCCCce---------------------e----eeeeEEEeCCCC
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPKSGAS---------------------L----WADLWAIPAASR 80 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~PkEG~~---------------------~----w~D~~~Ipk~A~ 80 (226)
+..+.+.+|++.+|..|..++... + +.|+ +|++-.. . -.-.++|+++++
T Consensus 231 ~~l~~v~~G~aDag~vy~S~a~~~---~--l~~v~lP~~~n~~~~~~~~~y~~v~v~~~~~~~~~~~Pi~y~~ai~k~a~ 305 (354)
T 3k6v_A 231 ELSSALETGEIDYLYIYRSVAEQH---G--FEYVALPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVTIPNNAE 305 (354)
T ss_dssp HHHHHHHHTSCSEEEEEHHHHHHH---T--CEEEECCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTTCT
T ss_pred HHHHHHHcCCCCEEEEEhhhhhhc---C--CcEEeCChhhccccccccccccceeeeccccccccCCceeEeEEeecCCC
Confidence 777889999999999999988764 2 4444 4544111 1 245689999999
Q ss_pred CCCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 81 LHKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 81 ~~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
|++.|++|+ +|+++|+.|+.+.
T Consensus 306 ---~~~~A~~Fi-~fL~S~eaq~i~~ 327 (354)
T 3k6v_A 306 ---NSELATEFV-ALLLGETGQQIFI 327 (354)
T ss_dssp ---THHHHHHHH-HHHHSHHHHHHHH
T ss_pred ---CHHHHHHHH-HHHcCHHHHHHHH
Confidence 999999999 9999999998763
No 83
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=96.62 E-value=0.0061 Score=56.25 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=30.1
Q ss_pred eeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHHhhhcc
Q 040509 68 LWADLWAIPAASRLHKTNWRASQWSISIDPSMDRILLP 105 (226)
Q Consensus 68 ~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe~qa~~ 105 (226)
.....|+|+++|+ |+++|.+|| +|+.+||.|..+
T Consensus 312 ~~~~~~~I~~~sk---~~e~A~~fl-~~l~s~e~~~l~ 345 (502)
T 3vlv_A 312 PRPDGWAITATNK---NPVETIKLF-DFYFGPKGRELS 345 (502)
T ss_dssp SCSCEEEEBTTCS---CHHHHHHHH-HHTTSHHHHHHH
T ss_pred CCCceEEEeCCCC---CHHHHHHHH-HHhcCHHHHHHH
Confidence 3447899999999 999999999 999999998754
No 84
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=96.22 E-value=0.0074 Score=53.72 Aligned_cols=78 Identities=10% Similarity=-0.015 Sum_probs=49.7
Q ss_pred ccchhhHHHHhhcCcEEEEEeccccHHHHHHc------CCCeEEEe---cC-----CC--ceeeeeeEEE--eCCCCCCC
Q 040509 22 VVKLYTLSEAFGIRDVWVAVGWSSDVLPAVKR------MSNVAVVV---PK-----SG--ASLWADLWAI--PAASRLHK 83 (226)
Q Consensus 22 ~~~~~~~~~~l~~GEv~va~~wsgd~~~a~~~------~~~i~~v~---Pk-----EG--~~~w~D~~~I--pk~A~~~~ 83 (226)
.+...+..+.+.+|++.|...++......... +..+.+.+ |. .+ +..+..+++| +++++
T Consensus 248 ~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~~sk--- 324 (433)
T 4gqo_A 248 LLLASKATDPFETGTSIMADNGPWTFPNWDEKFPELKYNENYAITAPLVPDSMVNEENVATYADSKGVVMYAQATDK--- 324 (433)
T ss_dssp CEECSCCSSHHHHTSEEEEEECTTHHHHHHHHCTTCCBTTTBEEECCCBCGGGTTCSSCCEEEEEEEEEEBTTSCHH---
T ss_pred CCChhhHHHHHhCCceeEEEcchHHHHHHHHhchhhhcccccceeeecCCccccCccccceeccccceEEeecCCch---
Confidence 34445666789999999988765544443332 23444443 21 11 2334445555 56677
Q ss_pred CHHHHHHHHHhhCCCHHhhh
Q 040509 84 TNWRASQWSISIDPSMDRIL 103 (226)
Q Consensus 84 n~e~A~kFI~nfll~Pe~qa 103 (226)
|+++|.+|| +||++++.|.
T Consensus 325 ~~eaA~~fl-~~l~s~e~~~ 343 (433)
T 4gqo_A 325 EKEAAMDFL-KFVYNDDKND 343 (433)
T ss_dssp HHHHHHHHH-HHHTTSHHHH
T ss_pred hHHHHHHHH-HHHcCCHHHH
Confidence 999999999 9999988654
No 85
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=92.69 E-value=0.11 Score=44.32 Aligned_cols=52 Identities=8% Similarity=-0.084 Sum_probs=41.2
Q ss_pred cCCCeEEEecCCCceeeeeeEEEeCCCCC-CCCHHHHHHHHHhhCCCHHhhhcc
Q 040509 53 RMSNVAVVVPKSGASLWADLWAIPAASRL-HKTNWRASQWSISIDPSMDRILLP 105 (226)
Q Consensus 53 ~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~-~~n~e~A~kFI~nfll~Pe~qa~~ 105 (226)
...+++++++.++..+..-+..+.+.+++ +.|.+.|++|+ +|+.+|+.|..+
T Consensus 180 ~~~~l~i~~~gd~~l~n~y~v~~v~p~~~~~~~~~~a~~f~-~wl~s~~gQ~~i 232 (237)
T 3muq_A 180 NKLDLEILFQGDEKLFNPYQVILVNPERYPTINYQGAKAFS-DWLVNPRGQELI 232 (237)
T ss_dssp GGCSCEEEECCCGGGEEEEEEEEECTTTCTTSCHHHHHHHH-HHHHSHHHHHHH
T ss_pred ccCCeEEEEcCCCceeeeeEEEEECcccCCccCHHHHHHHH-HHHcCHHHHHHH
Confidence 34579999998888888877777765541 23689999999 999999998865
No 86
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=85.35 E-value=1.1 Score=38.04 Aligned_cols=52 Identities=4% Similarity=-0.066 Sum_probs=33.3
Q ss_pred cCCCeEEEecCCCceeeeeeEEEeCCCCC-CCCHHHHHHHHHhhCCCHHhhhcc
Q 040509 53 RMSNVAVVVPKSGASLWADLWAIPAASRL-HKTNWRASQWSISIDPSMDRILLP 105 (226)
Q Consensus 53 ~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~-~~n~e~A~kFI~nfll~Pe~qa~~ 105 (226)
...++++++..+...+..=...++...++ +-|.+.|++|+ +|+.+|+.|..+
T Consensus 181 ~~~~l~i~~~~d~~l~n~y~~~~v~p~~~~~~~~~~a~~f~-~~l~s~~~q~~i 233 (236)
T 3lr1_A 181 AKTDLVILFQGEKGLFNPYGIMAVNPKKFPHVKYDLAMKLI-DYVTGPEGLKII 233 (236)
T ss_dssp TTBCCEEEEEC---CCEEEEEEEECTTTCTTSCHHHHHHHH-HHHTSHHHHHHH
T ss_pred CCCCeEEEEcCCcceeeceeEEEECcccCCccCHHHHHHHH-HHhcCHHHHHHH
Confidence 34568888865555555544444432220 13679999999 999999998855
No 87
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=76.12 E-value=3.3 Score=35.38 Aligned_cols=53 Identities=9% Similarity=-0.168 Sum_probs=32.9
Q ss_pred cCCCeEEEecCCCceeeeeeEEEeCCCCC-CCCHHHHHHHHHhhCCCHHhhhccc
Q 040509 53 RMSNVAVVVPKSGASLWADLWAIPAASRL-HKTNWRASQWSISIDPSMDRILLPF 106 (226)
Q Consensus 53 ~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~-~~n~e~A~kFI~nfll~Pe~qa~~~ 106 (226)
...++++++-.+...+..=+...+.-.++ +.|.+.|++|+ +||.+|+.|..+.
T Consensus 185 ~~~~l~i~~~gd~~l~n~y~~~~v~p~~~~~~~~~~a~~f~-~~l~s~~~q~~i~ 238 (242)
T 3kn3_A 185 GKPPMVIVLEGDNTLKNFYSIMAVNPKRCEKADYKGAKQFI-DWIVSEKMQAEIA 238 (242)
T ss_dssp SSCSCEEEECCCGGGCCEEEEEEECTTTCTTSCHHHHHHHH-HHHHSHHHHHHHH
T ss_pred CCCCeEEEEcCCcceEeeeEEEEECcccCCccCHHHHHHHH-HHHcCHHHHHHHH
Confidence 34568888843333333333333322110 13789999999 9999999998663
No 88
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=75.77 E-value=1.4 Score=37.21 Aligned_cols=73 Identities=7% Similarity=-0.105 Sum_probs=43.1
Q ss_pred hHHHHhhcCcEEEEEeccccHHHH-HHcCCCeEEEecC-----CCc-eeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCH
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPA-VKRMSNVAVVVPK-----SGA-SLWADLWAIPAASRLHKTNWRASQWSISIDPSM 99 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a-~~~~~~i~~v~Pk-----EG~-~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~P 99 (226)
...+.+..++-.+|.. +-.+.. ..+.-++..+.|. +|. ++.-..+.|.++++ +.+.|++|+ +|++++
T Consensus 191 ~~~~~V~~~~~aiGy~--~~~~~~~~~~~~~v~gv~pt~~~i~~g~YPl~rp~~~v~~~~~---~~~~ak~F~-~f~~S~ 264 (279)
T 4gd5_A 191 NIKSLVQGNENAIGYI--SFSYVDDSVSAVKVDGVEATPENVLNKSYKVSRPFLAVYKEEN---LTESGKSFI-DFILSE 264 (279)
T ss_dssp HHHHHHHHCTTEEEEE--EGGGCCTTEEECEETTBCCCHHHHHTTCSCCEEEEEEEECTTT---CCHHHHHHH-HHHHSH
T ss_pred cceeEEeecCccceec--chhhhhccccEeeecCccCCHHHhhcCCCCcEEEEEEEEcCCC---CCHHHHHHH-HHHcCH
Confidence 5566777777777653 111100 0011123333342 222 34444556778777 789999999 999999
Q ss_pred Hhhhcc
Q 040509 100 DRILLP 105 (226)
Q Consensus 100 e~qa~~ 105 (226)
+.|.-+
T Consensus 265 egQ~ii 270 (279)
T 4gd5_A 265 EGQDIV 270 (279)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999865
No 89
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=65.07 E-value=6.4 Score=33.36 Aligned_cols=47 Identities=9% Similarity=-0.048 Sum_probs=34.9
Q ss_pred CeEEEecC----CCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHH-hhhccc
Q 040509 56 NVAVVVPK----SGASLWADLWAIPAASRLHKTNWRASQWSISIDPSMD-RILLPF 106 (226)
Q Consensus 56 ~i~~v~Pk----EG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe-~qa~~~ 106 (226)
.+.++... +....+.-.+++.++.+ ++..|++|+ +|+.+++ .|.-+.
T Consensus 218 ~l~~~~~~~~~~~~~~~r~~~l~~~~~~~---~s~aa~~Fi-~~l~s~e~gq~i~~ 269 (294)
T 3cvg_A 218 QMVIYKKGTNDADDPLLNPAHLLVGARAK---NAEMAKEFA-KWLVSKEGGQKVIE 269 (294)
T ss_dssp TCEEEEECCSCTTCTTEEEEEEEEBSSCS---SHHHHHHHH-HHHHSTTTHHHHHH
T ss_pred ceEEEecCCCCCCcceeeEEEEEEeCCCC---CHHHHHHHH-HHHcCcHHHHHHHH
Confidence 46655432 33455666677788888 899999999 9999999 887653
No 90
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=40.65 E-value=36 Score=28.47 Aligned_cols=71 Identities=10% Similarity=-0.071 Sum_probs=46.6
Q ss_pred chhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCC
Q 040509 24 KLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDP 97 (226)
Q Consensus 24 ~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll 97 (226)
...+..+.|.+|+++.+..|......+..++ ..++++...+.....+.+++.++-- ++||+...+|+ .-+.
T Consensus 166 ~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~-~a~~ 236 (324)
T 3ksx_A 166 SPANARAAFAAGQVDAWAIWDPWYSALTLDG-SARLLANGEGLGLTGGFFLSSRRYA-TAWGPFVQQVM-GTLN 236 (324)
T ss_dssp CHHHHHHHHHTTCCSEEEEETTHHHHHHHTT-SEEEEEESTTSCCCCEEEEEEHHHH-HHTHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHcCCCCEEEEccHHHHHHHhcC-CcEEEecccccCCCccEEEECHHHH-HHCHHHHHHHH-HHHH
Confidence 3457788999999999999987776655443 4566655445444455665555321 12789999998 6443
No 91
>4h1x_A PBP 2, phosphate-binding protein PSTS 2; periplasmic binding protein, PF12849 family; HET: MSE CIT; 1.77A {Streptococcus pneumoniae}
Probab=39.96 E-value=13 Score=31.71 Aligned_cols=73 Identities=8% Similarity=-0.083 Sum_probs=42.5
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecC-----CCc-eeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCCHH
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPK-----SGA-SLWADLWAIPAASRLHKTNWRASQWSISIDPSMD 100 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~Pk-----EG~-~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~Pe 100 (226)
...+.+.+..-.+|..=-+-+.. .-+.-++..+-|. +|. +++-..+.+.++.+ .+.+.+|| +|+++++
T Consensus 56 ~vv~~Va~~~~AIGY~~~~y~~~-~vk~l~idgV~Pt~e~i~~g~YPlsRply~y~~~~~----~~~vk~Fl-~f~lS~~ 129 (265)
T 4h1x_A 56 GVLSAVQGNANAIGYISLGSLTK-SVKALEIDGVKASRDTVLDGEYPLQRPFNIVWSSNL----SKLGQDFI-SFIHSKQ 129 (265)
T ss_dssp HHHHHHHHCTTEEEEEEGGGCCT-TSEECEETTBCCSHHHHHTTCSCSEEEEEEEECTTC----CHHHHHHH-HHHHBHH
T ss_pred HHHHHHHcCCCcEEEeehHHhhc-ccccceecccCcchhhhhcCCCCeEEEEEEEECCCC----CHHHHHHH-HHHhhcc
Confidence 55667777666666532111100 0011223334442 222 46666777777655 46889999 9999999
Q ss_pred hhhcc
Q 040509 101 RILLP 105 (226)
Q Consensus 101 ~qa~~ 105 (226)
.|...
T Consensus 130 GQ~iv 134 (265)
T 4h1x_A 130 GQQVV 134 (265)
T ss_dssp HHHHH
T ss_pred cceee
Confidence 99865
No 92
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=38.64 E-value=36 Score=27.99 Aligned_cols=69 Identities=10% Similarity=-0.021 Sum_probs=44.4
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCC--CCCCCCHHHHHHHHHhhCCC
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA--SRLHKTNWRASQWSISIDPS 98 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~--A~~~~n~e~A~kFI~nfll~ 98 (226)
..+..++|.+|++++++.|......+..++ .++++....|.......+++.+. .. |++.+.+|+ .-+.+
T Consensus 141 ~~~~~~al~~G~vDa~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~-~al~~ 211 (308)
T 2x26_A 141 PADARAAFQQGNVDAWAIWDPYYSAALLQG-GVRVLKDGTDLNQTGSFYLAARPYAEK---NGAFIQGVL-ATFSE 211 (308)
T ss_dssp HHHHHHHHHTTSSSEEEEETTHHHHHHHHS-SEEEEEESTTSCCCCEEEEEEHHHHHH---THHHHHHHH-HHHHH
T ss_pred hHHHHHHHHcCCCCEEEecchhHHHHHhcC-CcEEEecCCCcCCcceEEEEcHHHHHH---CHHHHHHHH-HHHHH
Confidence 446778999999999999877665555443 46666553343333344444432 23 789999998 75543
No 93
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=38.24 E-value=35 Score=28.27 Aligned_cols=67 Identities=12% Similarity=-0.004 Sum_probs=44.9
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCC---------CceeeeeeEEEeCCCCCCCCHHHHHHHHHhhC
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKS---------GASLWADLWAIPAASRLHKTNWRASQWSISID 96 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkE---------G~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfl 96 (226)
+..+.|.+|+++.+..|......+..++ ..+++.... |...-...+++.++-- ++||+...+|+ +-+
T Consensus 178 ~~~~al~~G~vDa~~~~~p~~~~~~~~g-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~p~~~~~~~-~a~ 253 (346)
T 3qsl_A 178 GAVTALRSGQIDAISNTDPVVSMLETSG-DIQIIVDTRTLKDTKEIFGGNMPAGCLYAPQAFV-DANPNTAQALT-NAI 253 (346)
T ss_dssp HHHHHHHHTSCSEEEEETTHHHHHHHTT-CEEEEEECSSHHHHHHHHSSCCCCEEEEEEHHHH-HHCHHHHHHHH-HHH
T ss_pred HHHHHHHcCCccEEEecchhHHHHHhCC-CeEEEEecccccchhhhcCCCCceEEEEECHHHH-HHCHHHHHHHH-HHH
Confidence 6788999999999999988777776665 555555321 2233445566655420 12799999999 643
No 94
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=35.06 E-value=27 Score=29.75 Aligned_cols=36 Identities=19% Similarity=0.078 Sum_probs=31.2
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEe
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVV 61 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~ 61 (226)
.+..++|.+|++.+|++....+..++.+|.++..+.
T Consensus 49 ~~~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~~v~ 84 (342)
T 4esw_A 49 SDVTELVGSGKVDMGLKAMVGTLAAKARGFPVTSIG 84 (342)
T ss_dssp GGHHHHHHHTSSSEEEEEHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHcCCcCEEEecHHHHHHHHHCCCCeEEEE
Confidence 367889999999999999888999999998887654
No 95
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=34.12 E-value=76 Score=24.44 Aligned_cols=67 Identities=10% Similarity=-0.080 Sum_probs=42.9
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeee--eeEEEeCCCCCCCCHHHHHHHHHhhCC
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWA--DLWAIPAASRLHKTNWRASQWSISIDP 97 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~--D~~~Ipk~A~~~~n~e~A~kFI~nfll 97 (226)
..+..++|.+|++++++.+...+....++.+.+.++-+.....-|. -+++++++ +++...+|= ..+.
T Consensus 147 ~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~~l~~~l~-~~l~ 215 (242)
T 3del_B 147 TLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASD-----RPALALKIE-AAVQ 215 (242)
T ss_dssp HHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETT-----CHHHHHHHH-HHHH
T ss_pred HHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEEeCC-----CHHHHHHHH-HHHH
Confidence 3477889999999999998887777766666676664322222121 35777776 456665554 4443
No 96
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=33.17 E-value=1.2e+02 Score=22.85 Aligned_cols=67 Identities=10% Similarity=-0.107 Sum_probs=43.8
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCC--CeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCC
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDP 97 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~--~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll 97 (226)
..+..++|.+|++++++.+...+.....+.. .+..+ +. -.....-+++++++.+ -.+...++| .-+.
T Consensus 144 ~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~k~~~---l~~~~~~~l-~~l~ 212 (233)
T 1ii5_A 144 LTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVT-EI-RVSLEPYGFVLKENSP---LQKTINVEM-LNLL 212 (233)
T ss_dssp HHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEC-SC-CSEEEEEEEEEETTCT---THHHHHHHH-HHHH
T ss_pred HHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEEe-Cc-cccccceEEEEcCCch---HHHHHHHHH-HHHH
Confidence 3477889999999999988776655544443 44433 21 1223345678888876 677777787 5554
No 97
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=32.51 E-value=83 Score=24.51 Aligned_cols=63 Identities=11% Similarity=-0.057 Sum_probs=41.2
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceee--eeeEEEeCCCCCCCCHHHHHHHH
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLW--ADLWAIPAASRLHKTNWRASQWS 92 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w--~D~~~Ipk~A~~~~n~e~A~kFI 92 (226)
..+..++|.+|++++++.+...+....++.+.+.++-+.-...-| .-+++++++ +++...++=
T Consensus 168 ~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~~l~~~l~ 232 (268)
T 3qax_A 168 TLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKD-----RPEEIQTIQ 232 (268)
T ss_dssp HHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTT-----CHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEEeCC-----CHHHHHHHH
Confidence 347788999999999999988887777776666665432222111 135777775 455555544
No 98
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=28.99 E-value=87 Score=26.01 Aligned_cols=66 Identities=8% Similarity=-0.106 Sum_probs=42.0
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCC------CceeeeeeEEEeCCCCCCCCHHHHHHHH
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKS------GASLWADLWAIPAASRLHKTNWRASQWS 92 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkE------G~~~w~D~~~Ipk~A~~~~n~e~A~kFI 92 (226)
..+..++|.+|+++.++.|......+..++..++.++.-. |..+-..++++.+.-- ++ |+...+|+
T Consensus 132 ~~~~~~al~~G~vDa~~~~eP~~~~a~~~~~~~~~~~d~~~~w~~~~~~~~~~~~~~~~~~~-~~-p~~v~~~~ 203 (283)
T 3hn0_A 132 AGEITQGILAGKVNRAVLGEPFLSIALRKDSSLRITADLNHLTDNDTLGFAQTAVVYTPTME-KY-RIAFEDAL 203 (283)
T ss_dssp HHHHHHHHHHTSCSEEEECTTHHHHHHHHCTTCEEEEECCCSSTTCSSCCCCEEEEECGGGG-GG-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEecccHHHHHHhhCCCeEEEecHHHHhccCCCCCceEEEEEchHHh-hC-HHHHHHHH
Confidence 4677889999999999999877777665565566655311 1222334555555443 23 66666665
No 99
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=28.09 E-value=79 Score=26.63 Aligned_cols=38 Identities=16% Similarity=0.039 Sum_probs=28.9
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEec
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVP 62 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~P 62 (226)
..+..+.|.+|++++++.-......++.+|.++.++..
T Consensus 92 ~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~ 129 (341)
T 3un6_A 92 WPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVAL 129 (341)
T ss_dssp HHHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEee
Confidence 44778899999999998877766666777777666543
No 100
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=28.06 E-value=95 Score=24.51 Aligned_cols=68 Identities=10% Similarity=-0.027 Sum_probs=40.8
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE-ecC---------CCc-eeeeeeE-EEeCCCCCCCCHHHHHHHHHh
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV-VPK---------SGA-SLWADLW-AIPAASRLHKTNWRASQWSIS 94 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v-~Pk---------EG~-~~w~D~~-~Ipk~A~~~~n~e~A~kFI~n 94 (226)
...+++.+|+..+++.....+ ...+..+ ++. .|. ....+.. +..++ + +...+..|+ +
T Consensus 189 ~~~~~v~~g~~gi~~~p~~~~------~~~l~~~~l~~~~p~~~~i~~~~~~~~~~~~l~~~~~-~---~~~~~~~f~-~ 257 (290)
T 1twy_A 189 MMKTLVNHNTQAVGFISIGSV------DKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSD-N---ADEQTKEFI-A 257 (290)
T ss_dssp HHHHHHHHCTTEEEEEEGGGC------CTTSEECEETTBCCCHHHHHTTCSCCEEEEEEEECTT-T---CCHHHHHHH-H
T ss_pred HHHHHHhcCCCcEEEeeHHHh------hCCceEeEecCCCCCHHHHhcCCCccEEEEEEEEcCC-C---CCHHHHHHH-H
Confidence 556778888677777655433 1234332 221 111 2233333 44456 6 788999999 9
Q ss_pred hCCCHHhhhcc
Q 040509 95 IDPSMDRILLP 105 (226)
Q Consensus 95 fll~Pe~qa~~ 105 (226)
|+.+++.|..+
T Consensus 258 ~l~~~~~q~~~ 268 (290)
T 1twy_A 258 FLKSESAKKLI 268 (290)
T ss_dssp HHHSHHHHHHH
T ss_pred HHhCHHHHHHH
Confidence 99999888755
No 101
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=26.90 E-value=1.4e+02 Score=24.10 Aligned_cols=66 Identities=9% Similarity=-0.148 Sum_probs=41.4
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhCC
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISIDP 97 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll 97 (226)
..+..++|.+|++++++.+...+.....+.+.++++-+.....-+ -++++.++ +++...+|- ..+.
T Consensus 194 ~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~-----~~~l~~~l~-~al~ 259 (291)
T 2yjp_A 194 NTETFDALKDGRGVALAHDNALLWAWAKENPNFEVAIGNLGPAEF-IAPAVQKG-----NADLLNWVN-GEIA 259 (291)
T ss_dssp HHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEECCSSSCEE-ECCEEETT-----CHHHHHHHH-HHHH
T ss_pred HHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEcCCcccCCcc-eEEEEeCC-----CHHHHHHHH-HHHH
Confidence 347788999999999999887776666655567665432221111 15677765 456665554 4443
No 102
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=25.61 E-value=1.1e+02 Score=25.75 Aligned_cols=57 Identities=18% Similarity=0.106 Sum_probs=36.0
Q ss_pred chhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEec--CCCceeeeeeEEEeCCCC
Q 040509 24 KLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVP--KSGASLWADLWAIPAASR 80 (226)
Q Consensus 24 ~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~P--kEG~~~w~D~~~Ipk~A~ 80 (226)
++.+..+.|.+|+++++..-......+.++..-..+..| ..|.......++++++++
T Consensus 45 ~~~~~i~al~~G~vDi~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds~ 103 (310)
T 3n5l_A 45 DYAGIIQGMRFDKVDIAWYGNKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDSK 103 (310)
T ss_dssp SHHHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTCS
T ss_pred CHHHHHHHHHcCCCCEEEECcHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECCCC
Confidence 345788999999999997644455555443321222222 456666666778888776
No 103
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=25.00 E-value=92 Score=26.66 Aligned_cols=57 Identities=12% Similarity=0.087 Sum_probs=34.8
Q ss_pred chhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEec--CCCceeeeeeEEEeCCCC
Q 040509 24 KLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVP--KSGASLWADLWAIPAASR 80 (226)
Q Consensus 24 ~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~P--kEG~~~w~D~~~Ipk~A~ 80 (226)
++.+..+.|.+|+++++..-......+.++..-.-+..| ..|.....-.++++++++
T Consensus 55 ~~~~~i~aL~~G~vDia~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~ds~ 113 (321)
T 3p7i_A 55 DYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSP 113 (321)
T ss_dssp SHHHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETTCS
T ss_pred CHHHHHHHHHcCCCcEEEEChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECCCC
Confidence 344678999999999987544445555443321223333 356655555777888765
No 104
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=24.71 E-value=1.5e+02 Score=22.81 Aligned_cols=64 Identities=6% Similarity=-0.230 Sum_probs=37.8
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHc-C-CCeEEEecCCCceeeeeeEEEeCCCCCCCCHHHHHHHHHhhC
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKR-M-SNVAVVVPKSGASLWADLWAIPAASRLHKTNWRASQWSISID 96 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~-~-~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfl 96 (226)
..+..++|.+|++++.+.+...+.....+ + ..+.. .+.... -..-+++++++ +++...++= ..+
T Consensus 145 ~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~k~-----~~~l~~~ln-~~l 210 (245)
T 3k4u_A 145 EAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVH-LDTSLT-YEPLGWAIKKG-----DPDFLNWLN-HFL 210 (245)
T ss_dssp HHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEE-ECCCCS-CEEECCEECTT-----CHHHHHHHH-HHH
T ss_pred HHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceee-cCCCcc-cccEEEEEcCC-----CHHHHHHHH-HHH
Confidence 34678899999999999987655554333 3 33433 332222 33446677775 456655554 443
No 105
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=24.40 E-value=49 Score=28.85 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=41.6
Q ss_pred HHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCC--CceeeeeeEEEeCC--CCCCCCHHHHHHHHHhhCC
Q 040509 28 LSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKS--GASLWADLWAIPAA--SRLHKTNWRASQWSISIDP 97 (226)
Q Consensus 28 ~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkE--G~~~w~D~~~Ipk~--A~~~~n~e~A~kFI~nfll 97 (226)
..+.|.+|+++.++.|..-...+...| .+.+.... +.....+.+++.++ .. ||+...+|+ .-+.
T Consensus 210 ~~~aL~~G~vDA~~~~~p~~~~~~~~g--~~~l~~~~~~~~~~~~~~l~~~~~~~~~---~p~~v~~~~-~a~~ 277 (365)
T 2de3_A 210 QAAVLASGDVDALYSWLPWAGELQATG--ARPVVDLGLDERNAYASVWTVSSGLVRQ---RPGLVQRLV-DAAV 277 (365)
T ss_dssp HHHHHHSSSCSEEEEEHHHHHHHHHTT--EEESSCGGGSGGGCEEEEEEEEHHHHHH---CHHHHHHHH-HHHH
T ss_pred HHHHHhCCCcCEEEEcchhHHHHHhCC--CEEEEeCcccCCCCceEEEEEcHHHHHH---CHHHHHHHH-HHHH
Confidence 478899999999999976555554444 55554321 22345566666643 34 899999988 5333
No 106
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=24.32 E-value=1e+02 Score=18.03 Aligned_cols=27 Identities=19% Similarity=-0.045 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhcccchhhhhHHHHHhh
Q 040509 163 ATFDVLRWLKFLRFYEKRKMILCLNKVVAN 192 (226)
Q Consensus 163 ~~~~~y~~iW~~i~~~~~~~~~~~~~~~~~ 192 (226)
+.++.+.++| +.|.||-|.-||+-.-.
T Consensus 5 elekkfkelw---kgprrgeieelhkkfhe 31 (35)
T 1qp6_A 5 ELEKKFKELW---KGPRRGEIEELHKKFHE 31 (35)
T ss_dssp HHHHHHHHHH---SSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---cCCccchHHHHHHHHHH
Confidence 4456677777 57889999999876543
No 107
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=24.04 E-value=60 Score=26.62 Aligned_cols=70 Identities=9% Similarity=-0.042 Sum_probs=43.2
Q ss_pred hHHHHhhcCcEEEEEe--ccccHHHHHHcCCCeEEEecC-CCc-eeeeeeEEEeCCCCCCCCHHHHHHHHHhhCCC
Q 040509 27 TLSEAFGIRDVWVAVG--WSSDVLPAVKRMSNVAVVVPK-SGA-SLWADLWAIPAASRLHKTNWRASQWSISIDPS 98 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~--wsgd~~~a~~~~~~i~~v~Pk-EG~-~~w~D~~~Ipk~A~~~~n~e~A~kFI~nfll~ 98 (226)
+....|.+|+++.+++ +......+...|.++.+..+. .|. .+..+.++..++-- ++||+...+|+ +-+.+
T Consensus 143 ~~~~al~~G~vDa~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~p~~v~~~~-~a~~~ 216 (302)
T 3ix1_A 143 ELGASIVSGRADAVVGTYINHEYPVLKHEGHDISYFNPVDYGVPEYDELVLISNEAYV-EESGEVLAAFW-RAALK 216 (302)
T ss_dssp CHHHHHHHSSSSEEEEEETTTHHHHHHHTTCCEEEECGGGTTCCCCCSEEEEEEHHHH-HHCHHHHHHHH-HHHHH
T ss_pred cHHHHHhCCCCCEEEEeeecchHHHHHhcCCCceEeCHHHcCCCCCcccEEEECHHHH-HHCHHHHHHHH-HHHHH
Confidence 4567888999988773 344455666677777665543 344 33445566655421 12889999998 54443
No 108
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=23.73 E-value=1.5e+02 Score=24.93 Aligned_cols=72 Identities=8% Similarity=-0.078 Sum_probs=47.4
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHcC----CCeEEEecCCCceeeeeeEEEeCCCCCCCCHHH----HHHHHHhhCCC
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKRM----SNVAVVVPKSGASLWADLWAIPAASRLHKTNWR----ASQWSISIDPS 98 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~~----~~i~~v~PkEG~~~w~D~~~Ipk~A~~~~n~e~----A~kFI~nfll~ 98 (226)
+....+.+|++.+++.+........+.+ ..++.+... ..+--..+++|++.+ ++. ...+. ++.-+
T Consensus 159 ~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~lrvl~~s--~~~p~~~i~~~~~~~----~~l~~~l~~al~-~~~~d 231 (310)
T 3n5l_A 159 VNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWKS--PLIPGDPLVWRNNLS----DEQKNKLRDFFF-KYGAN 231 (310)
T ss_dssp HHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEEEE--EEEECCEEEEETTSC----HHHHHHHHHHHH-HCCCS
T ss_pred HHHHHHHcCCccEEEecchhHHHHHHhCccchhCEEEEEEC--CCCCCCcEEEECCCC----HHHHHHHHHHHH-hcCCC
Confidence 4678899999999999888776666654 467766532 122234688999865 343 33333 56677
Q ss_pred HHhhhcc
Q 040509 99 MDRILLP 105 (226)
Q Consensus 99 Pe~qa~~ 105 (226)
|+.+..+
T Consensus 232 ~~~~~~l 238 (310)
T 3n5l_A 232 AEQKKVL 238 (310)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 8776544
No 109
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=23.11 E-value=1.3e+02 Score=23.07 Aligned_cols=53 Identities=8% Similarity=0.013 Sum_probs=35.6
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeeeeeEEEeC
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPA 77 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~D~~~Ipk 77 (226)
..+..++|.+|+++..+.+...+....++.+.+..+.+..-..-..-++++++
T Consensus 155 ~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 207 (239)
T 3kbr_A 155 NVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR 207 (239)
T ss_dssp TTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECS
T ss_pred HHHHHHHHHcCCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcC
Confidence 34778899999999999887777666666666776664322223334566777
No 110
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=22.94 E-value=1e+02 Score=25.97 Aligned_cols=73 Identities=4% Similarity=-0.245 Sum_probs=43.1
Q ss_pred chhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecCCCceeee-eeEEEeCCCCCCCCHHHHHHHHHhhCCC
Q 040509 24 KLYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWA-DLWAIPAASRLHKTNWRASQWSISIDPS 98 (226)
Q Consensus 24 ~~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~PkEG~~~w~-D~~~Ipk~A~~~~n~e~A~kFI~nfll~ 98 (226)
...+..+.|.+|+++.++.|..-...+..++..-.+..+.+-..-+. +.+++.++-. ++||+...+|+ +-+.+
T Consensus 190 ~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~p~~v~~~~-~a~~~ 263 (341)
T 3un6_A 190 SPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELL-DQHKDVAQAFV-QDYKK 263 (341)
T ss_dssp CGGGHHHHHHTTSCSEEEEETTHHHHHHHSSCCEEEEEGGGTSTTCCCEEEEECHHHH-HHCHHHHHHHH-HHHHH
T ss_pred ChHHHHHHHHcCCCCEEEecCCHHHHHHhcCCeEEEEeccccCCCCceEEEEECHHHH-HHCHHHHHHHH-HHHHH
Confidence 34477889999999999999877666666654322333322111122 3444444311 12889999998 64433
No 111
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=22.28 E-value=1.2e+02 Score=25.46 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=26.0
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV 60 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v 60 (226)
+..+.|.+|++++++.-......+..++.++..+
T Consensus 59 ~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v 92 (348)
T 3uif_A 59 VINEGFASGKIDFGIYGDLPPIILNASKPTVQLV 92 (348)
T ss_dssp HHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEE
Confidence 4668899999999996666666666777777666
No 112
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=21.71 E-value=1.4e+02 Score=23.11 Aligned_cols=62 Identities=8% Similarity=-0.153 Sum_probs=39.3
Q ss_pred hhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEecC-CCceeeeeeEEEeCCCCCCCCHHHHHHHH
Q 040509 26 YTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVVPK-SGASLWADLWAIPAASRLHKTNWRASQWS 92 (226)
Q Consensus 26 ~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~Pk-EG~~~w~D~~~Ipk~A~~~~n~e~A~kFI 92 (226)
.+..++|.+|++++++.+...+.....+.+.+...... .......-.++++++ +++...+|=
T Consensus 181 ~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~l~ 243 (269)
T 4i62_A 181 GNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMKKD-----SKELKEAVD 243 (269)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEEESS-----CHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEEeCC-----CHHHHHHHH
Confidence 47788999999999999888776666666665554321 111122346677775 456555554
No 113
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=21.39 E-value=2.4e+02 Score=24.29 Aligned_cols=34 Identities=6% Similarity=-0.130 Sum_probs=22.4
Q ss_pred eeeeeeEEEeCCCCCCCC---HHHHHHHHHhhCCCHHhhhc
Q 040509 67 SLWADLWAIPAASRLHKT---NWRASQWSISIDPSMDRILL 104 (226)
Q Consensus 67 ~~w~D~~~Ipk~A~~~~n---~e~A~kFI~nfll~Pe~qa~ 104 (226)
++.-..+.+.+..+. + ...+.+|+ +|++++ .|..
T Consensus 286 Pi~r~~~~~~~~~~~--~~~~~~~~~~Fl-~~~~s~-gq~~ 322 (350)
T 1pc3_A 286 PIINYEYAIVNNRQK--DAATAQTLQAFL-HWAITD-GNKA 322 (350)
T ss_dssp SCEEEEEEEEESBCS--SHHHHHHHHHHH-HHHTTG-GGSH
T ss_pred ceeeeeeeeeecccC--CchhHHHHHHHH-HHHHcC-cchh
Confidence 566665555554331 2 56799999 999997 6643
No 114
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=21.32 E-value=82 Score=25.77 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=27.9
Q ss_pred hHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEE
Q 040509 27 TLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVV 60 (226)
Q Consensus 27 ~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v 60 (226)
+..+.|.+|++.++++....+..++.+|.++..+
T Consensus 46 ~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~ 79 (302)
T 3ix1_A 46 DPIQLTASGAIPLALSYQPDVILARSKDLPVVSV 79 (302)
T ss_dssp HHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEE
Confidence 7788999999999998777777777777776654
No 115
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=20.09 E-value=1.5e+02 Score=24.50 Aligned_cols=37 Identities=16% Similarity=-0.047 Sum_probs=28.3
Q ss_pred hhhHHHHhhcCcEEEEEeccccHHHHHHcCCCeEEEe
Q 040509 25 LYTLSEAFGIRDVWVAVGWSSDVLPAVKRMSNVAVVV 61 (226)
Q Consensus 25 ~~~~~~~l~~GEv~va~~wsgd~~~a~~~~~~i~~v~ 61 (226)
..+..+.|.+|++++++.-......+..++.++.++.
T Consensus 68 ~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~ 104 (324)
T 3ksx_A 68 GPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVG 104 (324)
T ss_dssp HHHHHHHHHTTSCSEEEEESHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHCCCCCEEeecCHHHHHHHhcCCCEEEEE
Confidence 3467789999999999876666666777777776664
Done!