Query 040514
Match_columns 51
No_of_seqs 101 out of 134
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:12:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2551 Phospholipase/carboxyh 99.5 1.6E-14 3.4E-19 93.9 4.8 49 1-50 172-222 (230)
2 PF03959 FSH1: Serine hydrolas 98.8 2.4E-09 5.1E-14 66.9 0.9 35 1-35 170-207 (212)
3 COG0400 Predicted esterase [Ge 95.1 0.041 8.9E-07 35.1 4.0 44 1-47 155-204 (207)
4 TIGR03056 bchO_mg_che_rel puta 94.3 0.11 2.3E-06 31.6 4.2 45 1-45 229-277 (278)
5 TIGR02240 PHA_depoly_arom poly 93.7 0.23 4.9E-06 31.0 4.9 49 1-49 216-267 (276)
6 TIGR03611 RutD pyrimidine util 92.9 0.26 5.7E-06 29.1 4.1 46 1-46 207-256 (257)
7 PLN02578 hydrolase 92.8 0.33 7.1E-06 32.0 4.8 46 1-46 305-353 (354)
8 TIGR01738 bioH putative pimelo 92.7 0.29 6.2E-06 28.5 4.0 35 1-35 197-234 (245)
9 TIGR03343 biphenyl_bphD 2-hydr 92.6 0.38 8.2E-06 29.6 4.7 46 1-46 232-281 (282)
10 PF02230 Abhydrolase_2: Phosph 92.3 0.2 4.3E-06 30.8 3.1 44 2-48 165-215 (216)
11 PRK07581 hypothetical protein; 92.0 0.57 1.2E-05 30.3 5.2 49 1-49 284-337 (339)
12 TIGR02427 protocat_pcaD 3-oxoa 91.8 0.43 9.3E-06 27.8 4.0 34 1-34 202-238 (251)
13 TIGR01249 pro_imino_pep_1 prol 91.4 0.72 1.6E-05 29.5 5.1 46 1-48 257-305 (306)
14 PRK10673 acyl-CoA esterase; Pr 90.2 0.79 1.7E-05 27.7 4.3 46 2-47 205-254 (255)
15 TIGR01250 pro_imino_pep_2 prol 89.9 0.93 2E-05 27.0 4.3 44 2-45 241-287 (288)
16 PRK00175 metX homoserine O-ace 87.9 1 2.2E-05 30.1 3.9 48 1-48 318-374 (379)
17 PRK11460 putative hydrolase; P 87.8 1.1 2.4E-05 28.1 3.8 45 1-48 157-208 (232)
18 KOG1552 Predicted alpha/beta h 87.6 1.2 2.7E-05 29.8 4.1 48 2-49 202-253 (258)
19 TIGR03695 menH_SHCHC 2-succiny 87.3 2 4.3E-05 24.7 4.5 34 2-35 204-239 (251)
20 PRK02308 uvsE putative UV dama 87.1 1.5 3.3E-05 29.3 4.4 36 9-49 135-173 (303)
21 PRK00870 haloalkane dehalogena 86.0 1.7 3.8E-05 27.5 4.0 47 1-47 248-300 (302)
22 PRK10349 carboxylesterase BioH 85.5 2.1 4.5E-05 26.2 4.1 45 1-45 205-253 (256)
23 PRK05855 short chain dehydroge 84.7 1.2 2.7E-05 30.2 3.0 48 1-48 242-292 (582)
24 PRK06489 hypothetical protein; 83.4 2.8 6.1E-05 27.6 4.2 47 1-48 301-357 (360)
25 PF06821 Ser_hydrolase: Serine 83.3 1.9 4.2E-05 26.3 3.3 34 1-34 123-158 (171)
26 PHA02857 monoglyceride lipase; 83.2 4.5 9.8E-05 25.0 4.9 48 1-48 218-273 (276)
27 PRK05077 frsA fermentation/res 83.0 2.5 5.4E-05 29.0 4.0 47 1-48 364-412 (414)
28 PLN02965 Probable pheophorbida 82.2 4.5 9.8E-05 24.9 4.7 49 1-49 202-254 (255)
29 PF14538 Raptor_N: Raptor N-te 81.0 2.2 4.8E-05 26.2 2.9 21 12-32 84-104 (154)
30 PLN02298 hydrolase, alpha/beta 80.4 4.6 0.0001 25.9 4.4 48 1-48 260-317 (330)
31 TIGR01392 homoserO_Ac_trn homo 80.3 2.2 4.9E-05 27.9 2.9 45 1-45 297-350 (351)
32 PRK11126 2-succinyl-6-hydroxy- 78.9 5.6 0.00012 23.8 4.2 36 12-47 205-241 (242)
33 PRK08775 homoserine O-acetyltr 78.7 4.1 9E-05 26.6 3.8 48 1-48 286-339 (343)
34 PLN02385 hydrolase; alpha/beta 75.8 8.9 0.00019 25.0 4.7 48 1-48 288-345 (349)
35 PLN02679 hydrolase, alpha/beta 75.7 5.3 0.00012 26.4 3.7 48 1-48 301-357 (360)
36 PLN02824 hydrolase, alpha/beta 75.3 6.6 0.00014 24.6 3.9 47 1-47 243-293 (294)
37 PF12697 Abhydrolase_6: Alpha/ 72.4 4.5 9.7E-05 22.9 2.4 34 1-34 185-221 (228)
38 PF08386 Abhydrolase_4: TAP-li 72.3 15 0.00032 20.5 4.6 45 2-46 44-92 (103)
39 PRK10566 esterase; Provisional 72.3 7.3 0.00016 23.7 3.5 45 1-48 195-248 (249)
40 PLN02213 sinapoylglucose-malat 71.1 5.6 0.00012 26.4 2.9 26 21-46 290-315 (319)
41 PF00450 Peptidase_S10: Serine 70.4 3.3 7.2E-05 27.2 1.7 26 21-46 388-414 (415)
42 PRK03592 haloalkane dehalogena 65.0 15 0.00032 23.0 3.8 49 1-49 237-290 (295)
43 COG3272 Uncharacterized conser 63.8 5.3 0.00011 25.2 1.6 44 6-49 67-117 (163)
44 PRK03204 haloalkane dehalogena 63.5 16 0.00035 23.2 3.8 45 1-45 236-285 (286)
45 PLN03016 sinapoylglucose-malat 63.2 8.6 0.00019 26.9 2.7 26 21-46 404-429 (433)
46 KOG1282 Serine carboxypeptidas 62.4 9.1 0.0002 27.4 2.8 26 22-47 421-447 (454)
47 PF07286 DUF1445: Protein of u 60.4 11 0.00024 23.3 2.6 22 9-30 119-140 (143)
48 TIGR01836 PHA_synth_III_C poly 60.3 22 0.00048 23.2 4.2 47 1-47 295-349 (350)
49 PRK07868 acyl-CoA synthetase; 59.9 21 0.00046 27.1 4.4 47 1-47 306-360 (994)
50 PF05728 UPF0227: Uncharacteri 59.7 14 0.00031 23.0 3.0 44 2-46 144-187 (187)
51 PLN02211 methyl indole-3-aceta 59.0 29 0.00063 22.1 4.4 44 1-47 220-265 (273)
52 PF00326 Peptidase_S9: Prolyl 58.3 11 0.00024 22.6 2.3 49 1-49 153-210 (213)
53 PRK06765 homoserine O-acetyltr 57.4 20 0.00044 24.6 3.7 47 1-47 332-387 (389)
54 cd02982 PDI_b'_family Protein 57.2 19 0.00041 19.0 3.0 38 11-48 57-102 (103)
55 PLN02209 serine carboxypeptida 57.0 13 0.00028 26.1 2.8 26 21-46 408-433 (437)
56 PLN03084 alpha/beta hydrolase 56.6 24 0.00052 24.2 4.0 46 1-46 334-382 (383)
57 PRK05371 x-prolyl-dipeptidyl a 56.6 21 0.00046 26.8 4.0 46 2-47 465-518 (767)
58 COG1073 Hydrolases of the alph 54.9 43 0.00092 20.1 4.5 47 2-48 242-297 (299)
59 PF00085 Thioredoxin: Thioredo 49.5 13 0.00028 19.3 1.5 40 9-48 60-103 (103)
60 PRK14875 acetoin dehydrogenase 49.3 34 0.00074 21.9 3.6 43 1-46 323-369 (371)
61 PF00561 Abhydrolase_1: alpha/ 48.8 26 0.00057 20.2 2.9 35 1-35 184-221 (230)
62 KOG4178 Soluble epoxide hydrol 48.7 52 0.0011 22.8 4.6 30 20-49 291-321 (322)
63 PF12875 DUF3826: Protein of u 48.3 20 0.00044 23.1 2.4 21 29-49 121-141 (188)
64 PF10340 DUF2424: Protein of u 47.8 23 0.00051 24.8 2.8 29 17-46 121-150 (374)
65 PRK11071 esterase YqiA; Provis 47.8 38 0.00082 20.6 3.5 42 2-46 146-189 (190)
66 KOG1517 Guanine nucleotide bin 47.7 22 0.00047 28.8 2.9 32 2-33 166-201 (1387)
67 PLN02894 hydrolase, alpha/beta 47.4 67 0.0014 21.8 5.0 48 1-48 334-385 (402)
68 PF04270 Strep_his_triad: Stre 46.7 21 0.00045 18.6 1.9 29 17-46 19-51 (53)
69 PLN02511 hydrolase 45.9 41 0.00089 22.7 3.7 49 1-49 307-366 (388)
70 cd03065 PDI_b_Calsequestrin_N 44.8 26 0.00056 20.4 2.4 40 9-48 76-118 (120)
71 PF12680 SnoaL_2: SnoaL-like d 44.1 28 0.00061 17.5 2.2 35 9-49 13-47 (102)
72 PF05129 Elf1: Transcription e 43.8 20 0.00044 19.7 1.7 20 30-50 60-79 (81)
73 PF08121 Toxin_33: Waglerin fa 41.6 13 0.00028 16.0 0.6 11 24-34 10-20 (22)
74 COG3208 GrsT Predicted thioest 40.3 28 0.00062 23.2 2.3 24 21-47 208-231 (244)
75 PF09752 DUF2048: Uncharacteri 39.8 22 0.00047 24.8 1.7 34 1-34 298-333 (348)
76 PRK10985 putative hydrolase; P 38.9 82 0.0018 20.4 4.3 48 1-48 264-320 (324)
77 TIGR00629 uvde UV damage endon 38.1 57 0.0012 22.3 3.5 36 9-49 138-180 (312)
78 PF01261 AP_endonuc_2: Xylose 36.9 86 0.0019 18.1 4.6 41 8-48 75-117 (213)
79 KOG3567 Peptidylglycine alpha- 36.0 30 0.00064 25.4 2.0 27 17-43 412-438 (501)
80 cd02657 Peptidase_C19A A subfa 35.4 19 0.00041 23.0 0.8 12 21-32 246-262 (305)
81 COG1650 Uncharacterized protei 35.1 16 0.00036 24.6 0.5 16 20-35 183-198 (266)
82 PF10040 DUF2276: Uncharacteri 35.0 56 0.0012 18.1 2.7 33 16-49 3-35 (121)
83 cd02664 Peptidase_C19H A subfa 34.9 21 0.00046 23.4 1.0 11 21-31 248-263 (327)
84 PF01133 ER: Enhancer of rudim 34.5 31 0.00067 20.2 1.6 30 18-47 68-97 (102)
85 cd02671 Peptidase_C19O A subfa 34.3 21 0.00046 23.9 1.0 11 21-31 277-292 (332)
86 PTZ00472 serine carboxypeptida 33.8 41 0.00089 23.7 2.4 26 21-46 431-457 (462)
87 PF07912 ERp29_N: ERp29, N-ter 32.6 1.2E+02 0.0026 18.4 4.5 39 10-48 71-118 (126)
88 COG1379 PHP family phosphoeste 32.5 45 0.00097 23.8 2.3 23 5-27 352-374 (403)
89 cd08071 MPN_DUF2466 Mov34/MPN/ 32.4 74 0.0016 18.2 3.0 15 21-35 66-80 (113)
90 PRK05463 hypothetical protein; 32.2 46 0.00099 22.5 2.3 24 9-32 229-252 (262)
91 TIGR01607 PST-A Plasmodium sub 32.1 1.5E+02 0.0032 19.5 4.9 46 1-46 279-331 (332)
92 COG4185 Uncharacterized protei 31.6 46 0.001 21.5 2.1 18 24-43 119-136 (187)
93 COG4123 Predicted O-methyltran 31.0 70 0.0015 21.2 3.0 28 15-46 219-246 (248)
94 PLN03087 BODYGUARD 1 domain co 30.9 1.4E+02 0.0031 21.4 4.7 33 1-33 427-462 (481)
95 PRK09636 RNA polymerase sigma 30.3 1.2E+02 0.0027 19.5 4.0 40 9-48 189-230 (293)
96 PLN02652 hydrolase; alpha/beta 29.5 1.5E+02 0.0032 20.3 4.5 48 1-48 333-387 (395)
97 PF14447 Prok-RING_4: Prokaryo 28.9 24 0.00052 18.6 0.4 13 22-34 21-33 (55)
98 cd02670 Peptidase_C19N A subfa 28.9 32 0.0007 22.3 1.1 12 21-32 172-188 (241)
99 COG0005 Pnp Purine nucleoside 28.8 70 0.0015 21.5 2.7 17 19-35 66-82 (262)
100 cd02257 Peptidase_C19 Peptidas 28.8 34 0.00073 19.9 1.1 12 21-32 198-214 (255)
101 PRK14892 putative transcriptio 28.5 51 0.0011 19.0 1.8 20 29-49 55-74 (99)
102 PF02236 Viral_DNA_bi: Viral D 28.5 17 0.00037 20.6 -0.2 41 8-48 8-48 (86)
103 PF04564 U-box: U-box domain; 28.4 19 0.00042 18.9 0.0 16 15-32 13-28 (73)
104 KOG1515 Arylacetamide deacetyl 27.9 86 0.0019 21.5 3.1 47 1-47 277-334 (336)
105 cd02668 Peptidase_C19L A subfa 27.8 29 0.00063 22.6 0.8 12 21-32 251-267 (324)
106 cd04237 AAK_NAGS-ABP AAK_NAGS- 27.3 62 0.0013 21.2 2.2 24 9-32 39-64 (280)
107 TIGR02821 fghA_ester_D S-formy 26.9 1.3E+02 0.0028 19.1 3.6 44 2-46 221-272 (275)
108 PF00443 UCH: Ubiquitin carbox 26.9 27 0.00058 20.8 0.5 12 21-32 216-231 (269)
109 PF04414 tRNA_deacylase: D-ami 26.8 24 0.00052 22.8 0.2 16 19-34 131-146 (213)
110 smart00504 Ubox Modified RING 26.6 42 0.00092 16.4 1.1 16 15-32 10-25 (63)
111 COG0036 Rpe Pentose-5-phosphat 26.5 29 0.00062 22.8 0.6 26 9-34 19-47 (220)
112 PRK08883 ribulose-phosphate 3- 26.4 29 0.00063 22.1 0.6 9 26-34 35-43 (220)
113 PRK03995 hypothetical protein; 26.4 43 0.00094 22.4 1.4 16 19-34 182-197 (267)
114 PF10346 Con-6: Conidiation pr 26.3 89 0.0019 15.0 2.2 18 31-48 17-34 (36)
115 PRK14866 hypothetical protein; 26.2 68 0.0015 23.1 2.4 16 19-34 186-201 (451)
116 PRK08745 ribulose-phosphate 3- 26.2 30 0.00065 22.3 0.6 9 26-34 39-47 (223)
117 PRK13604 luxD acyl transferase 25.5 1.7E+02 0.0037 19.9 4.1 44 2-49 212-260 (307)
118 TIGR00587 nfo apurinic endonuc 24.9 2E+02 0.0043 18.5 5.0 21 9-29 93-113 (274)
119 COG3545 Predicted esterase of 24.2 52 0.0011 21.1 1.4 46 2-47 127-178 (181)
120 COG2939 Carboxypeptidase C (ca 23.9 65 0.0014 23.7 2.0 23 14-36 455-478 (498)
121 cd02658 Peptidase_C19B A subfa 23.8 44 0.00095 21.4 1.0 12 21-32 257-273 (311)
122 PRK10162 acetyl esterase; Prov 23.6 2.1E+02 0.0045 18.7 4.2 48 1-48 257-315 (318)
123 cd02663 Peptidase_C19G A subfa 23.3 41 0.0009 21.6 0.9 12 21-32 242-258 (300)
124 PF14376 Haem_bd: Haem-binding 23.1 84 0.0018 18.6 2.1 25 21-49 113-137 (137)
125 PRK01060 endonuclease IV; Prov 23.1 2E+02 0.0044 18.0 4.8 19 9-27 94-112 (281)
126 cd02425 Peptidase_C39F A sub-f 23.0 61 0.0013 17.6 1.4 15 16-30 74-88 (126)
127 PF11892 DUF3412: Domain of un 22.9 28 0.0006 21.1 -0.0 29 5-33 91-119 (123)
128 cd09232 Snurportin-1_C C-termi 22.3 69 0.0015 20.1 1.7 19 17-35 160-178 (186)
129 PRK08005 epimerase; Validated 22.0 39 0.00084 21.7 0.5 26 9-34 16-44 (210)
130 PF00169 PH: PH domain; Inter 21.9 1.2E+02 0.0027 15.1 2.5 32 17-50 69-101 (104)
131 PF09743 DUF2042: Uncharacteri 21.9 64 0.0014 21.5 1.5 21 26-46 228-249 (272)
132 PRK09722 allulose-6-phosphate 21.7 41 0.00088 21.8 0.6 9 26-34 37-45 (229)
133 KOG4391 Predicted alpha/beta h 21.5 1.3E+02 0.0029 20.5 3.0 50 1-50 230-284 (300)
134 cd02659 peptidase_C19C A subfa 21.3 56 0.0012 21.0 1.2 12 21-32 257-272 (334)
135 PTZ00445 p36-lilke protein; Pr 21.3 68 0.0015 21.1 1.6 34 16-49 50-88 (219)
136 COG0548 ArgB Acetylglutamate k 21.2 59 0.0013 21.8 1.3 21 11-32 28-49 (265)
137 PF04002 RadC: RadC-like JAB d 21.2 1.3E+02 0.0028 17.3 2.6 13 22-34 72-84 (123)
138 cd02673 Peptidase_C19Q A subfa 21.2 52 0.0011 21.1 1.0 12 21-32 189-205 (245)
139 KOG1766 Enhancer of rudimentar 20.9 1.3E+02 0.0029 17.7 2.5 28 18-45 68-95 (104)
140 PF08741 YwhD: YwhD family; I 20.9 1E+02 0.0023 19.5 2.3 16 33-48 131-146 (163)
141 PRK08091 ribulose-phosphate 3- 20.5 42 0.0009 21.9 0.4 9 26-34 48-56 (228)
142 PRK11780 isoprenoid biosynthes 20.4 1E+02 0.0022 19.6 2.2 26 21-46 88-126 (217)
143 PRK06443 chorismate mutase; Va 20.4 49 0.0011 21.2 0.7 11 24-34 125-135 (177)
144 COG3509 LpqC Poly(3-hydroxybut 20.4 1.6E+02 0.0034 20.5 3.2 30 19-48 263-307 (312)
145 PTZ00372 endonuclease 4-like p 20.1 3.3E+02 0.0073 19.4 5.1 21 9-29 223-243 (413)
No 1
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=99.52 E-value=1.6e-14 Score=93.92 Aligned_cols=49 Identities=35% Similarity=0.530 Sum_probs=44.8
Q ss_pred Ccchhhh--hHHHHHhhcCCCeEEEcCCCcccccCChHhHHHHHHHHHHHhc
Q 040514 1 ENDFLKE--QGMVLLESFVDPVVIYHSKGHTIPRIDERGQETMLSFIQKFQM 50 (51)
Q Consensus 1 e~D~~~~--~s~~L~~~F~~p~vi~H~gGH~VP~~~~~~~~~~~~Fl~~~~~ 50 (51)
++|+++| +|+.|+++|.|++|+.|||||+||+.+ +.++.+++||+.+.+
T Consensus 172 ~~D~iv~~~~s~~L~~~~~~a~vl~HpggH~VP~~~-~~~~~i~~fi~~~~~ 222 (230)
T KOG2551|consen 172 ETDTIVPSERSEQLAESFKDATVLEHPGGHIVPNKA-KYKEKIADFIQSFLQ 222 (230)
T ss_pred ccceeecchHHHHHHHhcCCCeEEecCCCccCCCch-HHHHHHHHHHHHHHH
Confidence 5799888 589999999999999999999999998 799999999988753
No 2
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.75 E-value=2.4e-09 Score=66.85 Aligned_cols=35 Identities=40% Similarity=0.519 Sum_probs=26.2
Q ss_pred Ccchhhh--hHHHHHhhcCC-CeEEEcCCCcccccCCh
Q 040514 1 ENDFLKE--QGMVLLESFVD-PVVIYHSKGHTIPRIDE 35 (51)
Q Consensus 1 e~D~~~~--~s~~L~~~F~~-p~vi~H~gGH~VP~~~~ 35 (51)
++|.+++ +|+.|++.|.+ +.+++|+|||.||+.++
T Consensus 170 ~~D~~~~~~~s~~L~~~~~~~~~v~~h~gGH~vP~~~~ 207 (212)
T PF03959_consen 170 ENDPVVPPERSEALAEMFDPDARVIEHDGGHHVPRKKE 207 (212)
T ss_dssp TT-SSS-HHHHHHHHHHHHHHEEEEEESSSSS----HH
T ss_pred CCCCCcchHHHHHHHHhccCCcEEEEECCCCcCcCChh
Confidence 4788888 79999999998 99999999999999764
No 3
>COG0400 Predicted esterase [General function prediction only]
Probab=95.14 E-value=0.041 Score=35.12 Aligned_cols=44 Identities=25% Similarity=0.325 Sum_probs=33.0
Q ss_pred Ccchhhh--hHHHHHhhcCC----CeEEEcCCCcccccCChHhHHHHHHHHHH
Q 040514 1 ENDFLKE--QGMVLLESFVD----PVVIYHSKGHTIPRIDERGQETMLSFIQK 47 (51)
Q Consensus 1 e~D~~~~--~s~~L~~~F~~----p~vi~H~gGH~VP~~~~~~~~~~~~Fl~~ 47 (51)
+.|.++| .+.+|.+.+.+ -.+-.|++||-||. +..+.+++|+..
T Consensus 155 ~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~~GH~i~~---e~~~~~~~wl~~ 204 (207)
T COG0400 155 TEDPVVPLALAEALAEYLTASGADVEVRWHEGGHEIPP---EELEAARSWLAN 204 (207)
T ss_pred CcCCccCHHHHHHHHHHHHHcCCCEEEEEecCCCcCCH---HHHHHHHHHHHh
Confidence 3588877 47778888743 33556999999998 467788999875
No 4
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=94.30 E-value=0.11 Score=31.62 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=29.4
Q ss_pred Ccchhhh--hHHHHHhhcCCCeEEEcCC-CcccccCChH-hHHHHHHHH
Q 040514 1 ENDFLKE--QGMVLLESFVDPVVIYHSK-GHTIPRIDER-GQETMLSFI 45 (51)
Q Consensus 1 e~D~~~~--~s~~L~~~F~~p~vi~H~g-GH~VP~~~~~-~~~~~~~Fl 45 (51)
+.|.++| .++.+.+.+.+..++..++ ||+++-.+++ ..+.+.+|+
T Consensus 229 ~~D~~vp~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~f~ 277 (278)
T TIGR03056 229 EEDKAVPPDESKRAATRVPTATLHVVPGGGHLVHEEQADGVVGLILQAA 277 (278)
T ss_pred CCCcccCHHHHHHHHHhccCCeEEEECCCCCcccccCHHHHHHHHHHHh
Confidence 4677776 3688888888876666676 9998865432 233344454
No 5
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=93.67 E-value=0.23 Score=31.05 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=35.0
Q ss_pred Ccchhhhh--HHHHHhhcCCCeEEEcCCCcccccCChH-hHHHHHHHHHHHh
Q 040514 1 ENDFLKEQ--GMVLLESFVDPVVIYHSKGHTIPRIDER-GQETMLSFIQKFQ 49 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~vi~H~gGH~VP~~~~~-~~~~~~~Fl~~~~ 49 (51)
+.|.+++. ++.|.+.+.+..+..-++||.++-..++ ..+.+.+|+++.+
T Consensus 216 ~~D~~v~~~~~~~l~~~~~~~~~~~i~~gH~~~~e~p~~~~~~i~~fl~~~~ 267 (276)
T TIGR02240 216 DDDPIIPLINMRLLAWRIPNAELHIIDDGHLFLITRAEAVAPIIMKFLAEER 267 (276)
T ss_pred CCCCcCCHHHHHHHHHhCCCCEEEEEcCCCchhhccHHHHHHHHHHHHHHhh
Confidence 35777774 6779999988775555889998886542 3556778887654
No 6
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=92.93 E-value=0.26 Score=29.14 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=29.5
Q ss_pred Ccchhhhh--HHHHHhhcCCCe-EEEcCCCcccccCChHh-HHHHHHHHH
Q 040514 1 ENDFLKEQ--GMVLLESFVDPV-VIYHSKGHTIPRIDERG-QETMLSFIQ 46 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~-vi~H~gGH~VP~~~~~~-~~~~~~Fl~ 46 (51)
+.|.++|. ++.+.+.+.+.. ++...+||..+-..++. .+.+.+||+
T Consensus 207 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 207 RDDMLVPYTQSLRLAAALPNAQLKLLPYGGHASNVTDPETFNRALLDFLK 256 (257)
T ss_pred CcCcccCHHHHHHHHHhcCCceEEEECCCCCCccccCHHHHHHHHHHHhc
Confidence 46777663 677888887655 45567999977654332 345666654
No 7
>PLN02578 hydrolase
Probab=92.78 E-value=0.33 Score=31.98 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=32.1
Q ss_pred Ccchhhh--hHHHHHhhcCCCeEEEcCCCcccccCChHh-HHHHHHHHH
Q 040514 1 ENDFLKE--QGMVLLESFVDPVVIYHSKGHTIPRIDERG-QETMLSFIQ 46 (51)
Q Consensus 1 e~D~~~~--~s~~L~~~F~~p~vi~H~gGH~VP~~~~~~-~~~~~~Fl~ 46 (51)
++|.+++ .++.+.+.+.+..++.-++||+.+-..++. .+.+.+|++
T Consensus 305 ~~D~~v~~~~~~~l~~~~p~a~l~~i~~GH~~~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 305 DLDPWVGPAKAEKIKAFYPDTTLVNLQAGHCPHDEVPEQVNKALLEWLS 353 (354)
T ss_pred CCCCCCCHHHHHHHHHhCCCCEEEEeCCCCCccccCHHHHHHHHHHHHh
Confidence 4677666 377899999887655558999988765544 345666764
No 8
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=92.69 E-value=0.29 Score=28.51 Aligned_cols=35 Identities=11% Similarity=-0.182 Sum_probs=25.7
Q ss_pred Ccchhhhh--HHHHHhhcCCCeEEEcC-CCcccccCCh
Q 040514 1 ENDFLKEQ--GMVLLESFVDPVVIYHS-KGHTIPRIDE 35 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~vi~H~-gGH~VP~~~~ 35 (51)
+.|.+++. ++.+.+.+.+..++.-+ +||+++-..+
T Consensus 197 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p 234 (245)
T TIGR01738 197 YLDGLVPAKVVPYLDKLAPHSELYIFAKAAHAPFLSHA 234 (245)
T ss_pred cCCcccCHHHHHHHHHhCCCCeEEEeCCCCCCccccCH
Confidence 35776663 67788888888777776 7999888643
No 9
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=92.65 E-value=0.38 Score=29.64 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=31.3
Q ss_pred Ccchhhh--hHHHHHhhcCCCeEEE-cCCCcccccCChHh-HHHHHHHHH
Q 040514 1 ENDFLKE--QGMVLLESFVDPVVIY-HSKGHTIPRIDERG-QETMLSFIQ 46 (51)
Q Consensus 1 e~D~~~~--~s~~L~~~F~~p~vi~-H~gGH~VP~~~~~~-~~~~~~Fl~ 46 (51)
+.|.+++ .++.+.+...+-.+.. -.+||+++...++. .+.+.+|++
T Consensus 232 ~~D~~v~~~~~~~~~~~~~~~~~~~i~~agH~~~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 232 RDDRFVPLDHGLKLLWNMPDAQLHVFSRCGHWAQWEHADAFNRLVIDFLR 281 (282)
T ss_pred cCCCcCCchhHHHHHHhCCCCEEEEeCCCCcCCcccCHHHHHHHHHHHhh
Confidence 4577666 3788888887766444 45799998876544 355667764
No 10
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=92.26 E-value=0.2 Score=30.78 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=26.8
Q ss_pred cchhhhh--HHHHHhhcCC----CeEEEcC-CCcccccCChHhHHHHHHHHHHH
Q 040514 2 NDFLKEQ--GMVLLESFVD----PVVIYHS-KGHTIPRIDERGQETMLSFIQKF 48 (51)
Q Consensus 2 ~D~~~~~--s~~L~~~F~~----p~vi~H~-gGH~VP~~~~~~~~~~~~Fl~~~ 48 (51)
.|.++|. ++.+.+.+.+ .....-+ +||.|+. +..+.+++||++.
T Consensus 165 ~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~~---~~~~~~~~~l~~~ 215 (216)
T PF02230_consen 165 EDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEISP---EELRDLREFLEKH 215 (216)
T ss_dssp T-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS--H---HHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCH---HHHHHHHHHHhhh
Confidence 5888883 6666666632 3334444 9999986 5777899999863
No 11
>PRK07581 hypothetical protein; Validated
Probab=92.03 E-value=0.57 Score=30.30 Aligned_cols=49 Identities=8% Similarity=-0.051 Sum_probs=34.2
Q ss_pred Ccchhhh--hHHHHHhhcCCCeE-EEcC-CCcccccCC-hHhHHHHHHHHHHHh
Q 040514 1 ENDFLKE--QGMVLLESFVDPVV-IYHS-KGHTIPRID-ERGQETMLSFIQKFQ 49 (51)
Q Consensus 1 e~D~~~~--~s~~L~~~F~~p~v-i~H~-gGH~VP~~~-~~~~~~~~~Fl~~~~ 49 (51)
+.|.++| .++.+.+.+.+..+ +... .||..+-.. +.....+++|++++.
T Consensus 284 ~~D~~~p~~~~~~l~~~ip~a~l~~i~~~~GH~~~~~~~~~~~~~~~~~~~~~~ 337 (339)
T PRK07581 284 STDLYFPPEDCEAEAALIPNAELRPIESIWGHLAGFGQNPADIAFIDAALKELL 337 (339)
T ss_pred CCCCCCCHHHHHHHHHhCCCCeEEEeCCCCCccccccCcHHHHHHHHHHHHHHH
Confidence 4677766 37888888887554 4444 699998854 344667888888764
No 12
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=91.80 E-value=0.43 Score=27.77 Aligned_cols=34 Identities=9% Similarity=-0.110 Sum_probs=25.3
Q ss_pred Ccchhhhh--HHHHHhhcCCCeEEEcC-CCcccccCC
Q 040514 1 ENDFLKEQ--GMVLLESFVDPVVIYHS-KGHTIPRID 34 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~vi~H~-gGH~VP~~~ 34 (51)
+.|.+++. .+.+.+.+.+..+...+ +||.++-..
T Consensus 202 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 238 (251)
T TIGR02427 202 DQDGSTPPELVREIADLVPGARFAEIRGAGHIPCVEQ 238 (251)
T ss_pred ccCCcCChHHHHHHHHhCCCceEEEECCCCCcccccC
Confidence 45776763 56788888887777787 899988754
No 13
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=91.41 E-value=0.72 Score=29.52 Aligned_cols=46 Identities=13% Similarity=0.245 Sum_probs=33.4
Q ss_pred Ccchhhhh--HHHHHhhcCCCeEEEcC-CCcccccCChHhHHHHHHHHHHH
Q 040514 1 ENDFLKEQ--GMVLLESFVDPVVIYHS-KGHTIPRIDERGQETMLSFIQKF 48 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~vi~H~-gGH~VP~~~~~~~~~~~~Fl~~~ 48 (51)
+.|.++|. ++.+.+...+..++.-+ +||..- .+..++.+.+|++.+
T Consensus 257 ~~D~~~p~~~~~~~~~~~~~~~~~~~~~~gH~~~--~~~~~~~i~~~~~~~ 305 (306)
T TIGR01249 257 RYDLCCPLQSAWALHKAFPEAELKVTNNAGHSAF--DPNNLAALVHALETY 305 (306)
T ss_pred CCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCCC--ChHHHHHHHHHHHHh
Confidence 35777764 77888888876665554 699963 446788899998765
No 14
>PRK10673 acyl-CoA esterase; Provisional
Probab=90.19 E-value=0.79 Score=27.72 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=31.4
Q ss_pred cchhhh--hHHHHHhhcCCCe-EEEcCCCcccccCChH-hHHHHHHHHHH
Q 040514 2 NDFLKE--QGMVLLESFVDPV-VIYHSKGHTIPRIDER-GQETMLSFIQK 47 (51)
Q Consensus 2 ~D~~~~--~s~~L~~~F~~p~-vi~H~gGH~VP~~~~~-~~~~~~~Fl~~ 47 (51)
.|..++ .++.+.+.+.+-. ++...+||+.+-..++ ..+.+.+||.+
T Consensus 205 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 205 NSPYVTEAYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND 254 (255)
T ss_pred CCCCCCHHHHHHHHHhCCCcEEEEeCCCCCeeeccCHHHHHHHHHHHHhc
Confidence 566554 3677899887755 4567789998876654 34667778753
No 15
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=89.87 E-value=0.93 Score=27.04 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=27.8
Q ss_pred cchhhh-hHHHHHhhcCCCeEEEcC-CCcccccCChH-hHHHHHHHH
Q 040514 2 NDFLKE-QGMVLLESFVDPVVIYHS-KGHTIPRIDER-GQETMLSFI 45 (51)
Q Consensus 2 ~D~~~~-~s~~L~~~F~~p~vi~H~-gGH~VP~~~~~-~~~~~~~Fl 45 (51)
.|.+.+ .++.+.+.+.+..++..+ +||.++-..++ ..+.+.+|+
T Consensus 241 ~D~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl 287 (288)
T TIGR01250 241 FDTMTPEAAREMQELIAGSRLVVFPDGSHMTMIEDPEVYFKLLSDFI 287 (288)
T ss_pred CCccCHHHHHHHHHhccCCeEEEeCCCCCCcccCCHHHHHHHHHHHh
Confidence 465444 367788888776666665 79998886532 233445554
No 16
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=87.92 E-value=1 Score=30.09 Aligned_cols=48 Identities=13% Similarity=0.270 Sum_probs=34.7
Q ss_pred Ccchhhh--hHHHHHhhcCCC-----eEEEc-CCCcccccCChHh-HHHHHHHHHHH
Q 040514 1 ENDFLKE--QGMVLLESFVDP-----VVIYH-SKGHTIPRIDERG-QETMLSFIQKF 48 (51)
Q Consensus 1 e~D~~~~--~s~~L~~~F~~p-----~vi~H-~gGH~VP~~~~~~-~~~~~~Fl~~~ 48 (51)
+.|.+.| .++.+.+.+.+. .++.. ..||..+-.+++. .+.+++||.+.
T Consensus 318 ~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~le~p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 318 TSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDAFLLDDPRYGRLVRAFLERA 374 (379)
T ss_pred CCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHhcCHHHHHHHHHHHHHhh
Confidence 4677665 378899999775 34455 6999999876554 56788999764
No 17
>PRK11460 putative hydrolase; Provisional
Probab=87.77 E-value=1.1 Score=28.11 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=31.0
Q ss_pred Ccchhhh--hHHHHHhhcCC---Ce--EEEcCCCcccccCChHhHHHHHHHHHHH
Q 040514 1 ENDFLKE--QGMVLLESFVD---PV--VIYHSKGHTIPRIDERGQETMLSFIQKF 48 (51)
Q Consensus 1 e~D~~~~--~s~~L~~~F~~---p~--vi~H~gGH~VP~~~~~~~~~~~~Fl~~~ 48 (51)
+.|.++| .++++.+.+.+ ++ .++-.+||.+.. +..+.+.+||++.
T Consensus 157 ~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~---~~~~~~~~~l~~~ 208 (232)
T PRK11460 157 GEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAIDP---RLMQFALDRLRYT 208 (232)
T ss_pred CCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCH---HHHHHHHHHHHHH
Confidence 4688888 47777777742 22 334568999975 5677888888765
No 18
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=87.61 E-value=1.2 Score=29.78 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=38.2
Q ss_pred cchhhh--hHHHHHhhcCCCe--EEEcCCCcccccCChHhHHHHHHHHHHHh
Q 040514 2 NDFLKE--QGMVLLESFVDPV--VIYHSKGHTIPRIDERGQETMLSFIQKFQ 49 (51)
Q Consensus 2 ~D~~~~--~s~~L~~~F~~p~--vi~H~gGH~VP~~~~~~~~~~~~Fl~~~~ 49 (51)
.|.+++ .+..|.+.+.+|+ .+.+-+||-=+-+.++..+.++.|+....
T Consensus 202 dDevv~~sHg~~Lye~~k~~~epl~v~g~gH~~~~~~~~yi~~l~~f~~~~~ 253 (258)
T KOG1552|consen 202 DDEVVDFSHGKALYERCKEKVEPLWVKGAGHNDIELYPEYIEHLRRFISSVL 253 (258)
T ss_pred cCceecccccHHHHHhccccCCCcEEecCCCcccccCHHHHHHHHHHHHHhc
Confidence 467888 4899999998854 67788888777777788889999987654
No 19
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=87.34 E-value=2 Score=24.75 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=23.0
Q ss_pred cchhhh-hHHHHHhhcCCCeEEEcCC-CcccccCCh
Q 040514 2 NDFLKE-QGMVLLESFVDPVVIYHSK-GHTIPRIDE 35 (51)
Q Consensus 2 ~D~~~~-~s~~L~~~F~~p~vi~H~g-GH~VP~~~~ 35 (51)
.|...+ .++.+.+.+.+..++.-++ ||+++-..+
T Consensus 204 ~D~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~ 239 (251)
T TIGR03695 204 KDEKFVQIAKEMQKLLPNLTLVIIANAGHNIHLENP 239 (251)
T ss_pred cchHHHHHHHHHHhcCCCCcEEEEcCCCCCcCccCh
Confidence 565444 3666777777777777775 999887543
No 20
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=87.14 E-value=1.5 Score=29.31 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=23.0
Q ss_pred HHHHHhhcCCC---eEEEcCCCcccccCChHhHHHHHHHHHHHh
Q 040514 9 GMVLLESFVDP---VVIYHSKGHTIPRIDERGQETMLSFIQKFQ 49 (51)
Q Consensus 9 s~~L~~~F~~p---~vi~H~gGH~VP~~~~~~~~~~~~Fl~~~~ 49 (51)
..++++.+--+ .|+.|||||+ -+ ..+.+..|.+.+.
T Consensus 135 ~~~~~~~lG~~~~~~vViHpG~~~---~~--ke~al~r~~~~l~ 173 (303)
T PRK02308 135 HAKLLDLMGIDDSSKINIHVGGAY---GD--KEKALERFIENIK 173 (303)
T ss_pred HHHHHHHCCCCCCCEEEECCCccC---CC--HHHHHHHHHHHHH
Confidence 34455666445 8999999997 22 2336667766654
No 21
>PRK00870 haloalkane dehalogenase; Provisional
Probab=85.96 E-value=1.7 Score=27.48 Aligned_cols=47 Identities=17% Similarity=0.267 Sum_probs=30.4
Q ss_pred Ccchhhhh-HHHHHhhcCCC----eEEEcCCCcccccCChHh-HHHHHHHHHH
Q 040514 1 ENDFLKEQ-GMVLLESFVDP----VVIYHSKGHTIPRIDERG-QETMLSFIQK 47 (51)
Q Consensus 1 e~D~~~~~-s~~L~~~F~~p----~vi~H~gGH~VP~~~~~~-~~~~~~Fl~~ 47 (51)
+.|.+.+. ++.+.+.+.+. +++.-.+||.++-..++. .+.+.+|+++
T Consensus 248 ~~D~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~fl~~ 300 (302)
T PRK00870 248 DSDPITGGGDAILQKRIPGAAGQPHPTIKGAGHFLQEDSGEELAEAVLEFIRA 300 (302)
T ss_pred CCCCcccCchHHHHhhcccccccceeeecCCCccchhhChHHHHHHHHHHHhc
Confidence 46777773 56788888765 345566799988654432 3456677754
No 22
>PRK10349 carboxylesterase BioH; Provisional
Probab=85.52 E-value=2.1 Score=26.23 Aligned_cols=45 Identities=11% Similarity=-0.019 Sum_probs=28.9
Q ss_pred Ccchhhhh--HHHHHhhcCCCeE-EEcCCCcccccCChHh-HHHHHHHH
Q 040514 1 ENDFLKEQ--GMVLLESFVDPVV-IYHSKGHTIPRIDERG-QETMLSFI 45 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~v-i~H~gGH~VP~~~~~~-~~~~~~Fl 45 (51)
+.|.++|. ++.+.+.+.+..+ +.-.+||+++-..++. .+.+.+|-
T Consensus 205 ~~D~~~~~~~~~~~~~~i~~~~~~~i~~~gH~~~~e~p~~f~~~l~~~~ 253 (256)
T PRK10349 205 YLDGLVPRKVVPMLDKLWPHSESYIFAKAAHAPFISHPAEFCHLLVALK 253 (256)
T ss_pred CCCccCCHHHHHHHHHhCCCCeEEEeCCCCCCccccCHHHHHHHHHHHh
Confidence 45776664 5778888888664 4456799999866433 22344443
No 23
>PRK05855 short chain dehydrogenase; Validated
Probab=84.73 E-value=1.2 Score=30.16 Aligned_cols=48 Identities=13% Similarity=-0.018 Sum_probs=32.4
Q ss_pred Ccchhhhh--HHHHHhhcCCCeEEEcCCCcccccCChH-hHHHHHHHHHHH
Q 040514 1 ENDFLKEQ--GMVLLESFVDPVVIYHSKGHTIPRIDER-GQETMLSFIQKF 48 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~vi~H~gGH~VP~~~~~-~~~~~~~Fl~~~ 48 (51)
+.|.+++. ++.+.+...+.....-++||+.+...++ ..+.+.+|+.+.
T Consensus 242 ~~D~~v~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 292 (582)
T PRK05855 242 TGDPYVRPALYDDLSRWVPRLWRREIKAGHWLPMSHPQVLAAAVAEFVDAV 292 (582)
T ss_pred CCCcccCHHHhccccccCCcceEEEccCCCcchhhChhHHHHHHHHHHHhc
Confidence 36776663 4566666666666666899999976553 346688888754
No 24
>PRK06489 hypothetical protein; Provisional
Probab=83.38 E-value=2.8 Score=27.60 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=29.9
Q ss_pred Ccchhhhh--H--HHHHhhcCCCeEEEcCC-----CcccccCChH-hHHHHHHHHHHH
Q 040514 1 ENDFLKEQ--G--MVLLESFVDPVVIYHSK-----GHTIPRIDER-GQETMLSFIQKF 48 (51)
Q Consensus 1 e~D~~~~~--s--~~L~~~F~~p~vi~H~g-----GH~VP~~~~~-~~~~~~~Fl~~~ 48 (51)
+.|.+.|. + +.+.+.+.+..++.=++ ||.+. ..++ ..+.+.+|+++.
T Consensus 301 ~~D~~~p~~~~~~~~la~~ip~a~l~~i~~a~~~~GH~~~-e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 301 ADDERNPPETGVMEAALKRVKHGRLVLIPASPETRGHGTT-GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred CCCcccChhhHHHHHHHHhCcCCeEEEECCCCCCCCcccc-cCHHHHHHHHHHHHHhc
Confidence 46877764 3 67899998765444343 99875 4432 345577888764
No 25
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=83.29 E-value=1.9 Score=26.33 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=26.5
Q ss_pred Ccchhhh--hHHHHHhhcCCCeEEEcCCCcccccCC
Q 040514 1 ENDFLKE--QGMVLLESFVDPVVIYHSKGHTIPRID 34 (51)
Q Consensus 1 e~D~~~~--~s~~L~~~F~~p~vi~H~gGH~VP~~~ 34 (51)
++|..+| .++.|++...-++++.-.+||+-....
T Consensus 123 ~nDp~vp~~~a~~~A~~l~a~~~~~~~~GHf~~~~G 158 (171)
T PF06821_consen 123 DNDPYVPFERAQRLAQRLGAELIILGGGGHFNAASG 158 (171)
T ss_dssp TTBSSS-HHHHHHHHHHHT-EEEEETS-TTSSGGGT
T ss_pred CCCCccCHHHHHHHHHHcCCCeEECCCCCCcccccC
Confidence 4677777 589999999999999999999998865
No 26
>PHA02857 monoglyceride lipase; Provisional
Probab=83.18 E-value=4.5 Score=24.99 Aligned_cols=48 Identities=10% Similarity=0.218 Sum_probs=30.9
Q ss_pred Ccchhhhh--HHHHHhhcC-CCeE-EEcCCCcccccCCh----HhHHHHHHHHHHH
Q 040514 1 ENDFLKEQ--GMVLLESFV-DPVV-IYHSKGHTIPRIDE----RGQETMLSFIQKF 48 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~-~p~v-i~H~gGH~VP~~~~----~~~~~~~~Fl~~~ 48 (51)
++|.++|. ++.|.+.+. +..+ +.=.+||.+....+ +..+.+.+||++.
T Consensus 218 ~~D~i~~~~~~~~l~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 218 TNNEISDVSGAYYFMQHANCNREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred CCCCcCChHHHHHHHHHccCCceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 46887773 788888873 3333 34448999986543 2344566788764
No 27
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=83.04 E-value=2.5 Score=29.04 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=35.9
Q ss_pred Ccchhhhh--HHHHHhhcCCCeEEEcCCCcccccCChHhHHHHHHHHHHH
Q 040514 1 ENDFLKEQ--GMVLLESFVDPVVIYHSKGHTIPRIDERGQETMLSFIQKF 48 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~vi~H~gGH~VP~~~~~~~~~~~~Fl~~~ 48 (51)
+.|.++|. ++.|.+.+.+..++..|+.|...... .....+.+||.+.
T Consensus 364 ~~D~ivP~~~a~~l~~~~~~~~l~~i~~~~~~e~~~-~~~~~i~~wL~~~ 412 (414)
T PRK05077 364 KNDPFSPEEDSRLIASSSADGKLLEIPFKPVYRNFD-KALQEISDWLEDR 412 (414)
T ss_pred CCCCCCCHHHHHHHHHhCCCCeEEEccCCCccCCHH-HHHHHHHHHHHHH
Confidence 46888874 67788888898999999987776543 5677788888764
No 28
>PLN02965 Probable pheophorbidase
Probab=82.19 E-value=4.5 Score=24.93 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=34.7
Q ss_pred Ccchhhhh--HHHHHhhcCCCe-EEEcCCCcccccCChHh-HHHHHHHHHHHh
Q 040514 1 ENDFLKEQ--GMVLLESFVDPV-VIYHSKGHTIPRIDERG-QETMLSFIQKFQ 49 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~-vi~H~gGH~VP~~~~~~-~~~~~~Fl~~~~ 49 (51)
+.|.++|. ++.+.+.+.+.. ++.=.+||.+.-..++. .+.+.+|++..+
T Consensus 202 ~~D~~~~~~~~~~~~~~~~~a~~~~i~~~GH~~~~e~p~~v~~~l~~~~~~~~ 254 (255)
T PLN02965 202 AKDNLFDPVRQDVMVENWPPAQTYVLEDSDHSAFFSVPTTLFQYLLQAVSSLQ 254 (255)
T ss_pred CCCCCCCHHHHHHHHHhCCcceEEEecCCCCchhhcCHHHHHHHHHHHHHHhc
Confidence 46777764 788999998765 44567899999876544 445677777654
No 29
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=81.03 E-value=2.2 Score=26.15 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=16.6
Q ss_pred HHhhcCCCeEEEcCCCccccc
Q 040514 12 LLESFVDPVVIYHSKGHTIPR 32 (51)
Q Consensus 12 L~~~F~~p~vi~H~gGH~VP~ 32 (51)
|-....+..|+.|=.||-||+
T Consensus 84 ~R~~a~~~RvLFHYnGhGvP~ 104 (154)
T PF14538_consen 84 LRRNAKDERVLFHYNGHGVPR 104 (154)
T ss_pred HHhhCCCceEEEEECCCCCCC
Confidence 333345688999999999998
No 30
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=80.36 E-value=4.6 Score=25.90 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=29.9
Q ss_pred Ccchhhhh--HHHHHhhcC--CCeEEEcC-CCcccccCCh-----HhHHHHHHHHHHH
Q 040514 1 ENDFLKEQ--GMVLLESFV--DPVVIYHS-KGHTIPRIDE-----RGQETMLSFIQKF 48 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~--~p~vi~H~-gGH~VP~~~~-----~~~~~~~~Fl~~~ 48 (51)
+.|.++|. ++.|.+... +..+..-+ +||.+....+ ...+.+.+||++.
T Consensus 260 ~~D~ivp~~~~~~l~~~i~~~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~ 317 (330)
T PLN02298 260 SADVVTDPDVSRALYEEAKSEDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNER 317 (330)
T ss_pred CCCCCCCHHHHHHHHHHhccCCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHh
Confidence 36777773 777888764 33444445 5899875432 2345677888765
No 31
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=80.26 E-value=2.2 Score=27.90 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=28.6
Q ss_pred Ccchhhh--hHHHHHhhcCCCeEE-----Ec-CCCcccccCChHh-HHHHHHHH
Q 040514 1 ENDFLKE--QGMVLLESFVDPVVI-----YH-SKGHTIPRIDERG-QETMLSFI 45 (51)
Q Consensus 1 e~D~~~~--~s~~L~~~F~~p~vi-----~H-~gGH~VP~~~~~~-~~~~~~Fl 45 (51)
+.|.+.| .++.+++.+.+..+. .. ..||..+-.+++. .+.+.+||
T Consensus 297 ~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~le~p~~~~~~l~~FL 350 (351)
T TIGR01392 297 TSDWLFPPAESRELAKALPAAGLRVTYVEIESPYGHDAFLVETDQVEELIRGFL 350 (351)
T ss_pred CCccccCHHHHHHHHHHHhhcCCceEEEEeCCCCCcchhhcCHHHHHHHHHHHh
Confidence 4677666 378899999775432 44 4699988865433 23455665
No 32
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=78.88 E-value=5.6 Score=23.84 Aligned_cols=36 Identities=14% Similarity=0.308 Sum_probs=21.8
Q ss_pred HHhhcCCCeEEEcCCCcccccCChHh-HHHHHHHHHH
Q 040514 12 LLESFVDPVVIYHSKGHTIPRIDERG-QETMLSFIQK 47 (51)
Q Consensus 12 L~~~F~~p~vi~H~gGH~VP~~~~~~-~~~~~~Fl~~ 47 (51)
+++...-.+++.-.+||+++-..++. .+.+.+|+.+
T Consensus 205 ~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 205 LAQQLALPLHVIPNAGHNAHRENPAAFAASLAQILRL 241 (242)
T ss_pred HHHHhcCeEEEeCCCCCchhhhChHHHHHHHHHHHhh
Confidence 33333334555566799999865543 4457777765
No 33
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=78.68 E-value=4.1 Score=26.57 Aligned_cols=48 Identities=15% Similarity=0.112 Sum_probs=31.7
Q ss_pred Ccchhhh--hHHHHHhhc-CCCe-EEEc-CCCcccccCChHh-HHHHHHHHHHH
Q 040514 1 ENDFLKE--QGMVLLESF-VDPV-VIYH-SKGHTIPRIDERG-QETMLSFIQKF 48 (51)
Q Consensus 1 e~D~~~~--~s~~L~~~F-~~p~-vi~H-~gGH~VP~~~~~~-~~~~~~Fl~~~ 48 (51)
+.|.+.| .++++.+.. .+.. ++.. .+||.++-..++. .+.+.+||++.
T Consensus 286 ~~D~~~p~~~~~~~~~~i~p~a~l~~i~~~aGH~~~lE~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 286 EGDRLVPLADLVELAEGLGPRGSLRVLRSPYGHDAFLKETDRIDAILTTALRST 339 (343)
T ss_pred CCCEeeCHHHHHHHHHHcCCCCeEEEEeCCccHHHHhcCHHHHHHHHHHHHHhc
Confidence 3577666 377788877 4544 4444 4899999876544 44567888764
No 34
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=75.80 E-value=8.9 Score=25.01 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=31.0
Q ss_pred Ccchhhhh--HHHHHhhcCC--C-eEEEcCCCcccccCChH-----hHHHHHHHHHHH
Q 040514 1 ENDFLKEQ--GMVLLESFVD--P-VVIYHSKGHTIPRIDER-----GQETMLSFIQKF 48 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~--p-~vi~H~gGH~VP~~~~~-----~~~~~~~Fl~~~ 48 (51)
+.|.+++. ++.+.+...+ . +++.=.+||.+.-..++ ..+.+.+||++.
T Consensus 288 ~~D~vv~~~~~~~l~~~~~~~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~ 345 (349)
T PLN02385 288 EADKVTDPSVSKFLYEKASSSDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSH 345 (349)
T ss_pred CCCCccChHHHHHHHHHcCCCCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHh
Confidence 46888874 7888888743 2 44555578987654432 234577888764
No 35
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=75.68 E-value=5.3 Score=26.45 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=30.6
Q ss_pred CcchhhhhH-------HHHHhhcCCCe-EEEcCCCcccccCChHh-HHHHHHHHHHH
Q 040514 1 ENDFLKEQG-------MVLLESFVDPV-VIYHSKGHTIPRIDERG-QETMLSFIQKF 48 (51)
Q Consensus 1 e~D~~~~~s-------~~L~~~F~~p~-vi~H~gGH~VP~~~~~~-~~~~~~Fl~~~ 48 (51)
+.|.++|.. ..|.+.+.+.. ++.-..||+++-..++. .+.+.+||+++
T Consensus 301 ~~D~~~p~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~~E~Pe~~~~~I~~FL~~~ 357 (360)
T PLN02679 301 DQDPFTPLDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPHDDRPDLVHEKLLPWLAQL 357 (360)
T ss_pred CCCCCcCchhhHHHHHHhhhccCCceEEEEcCCCCCCccccCHHHHHHHHHHHHHhc
Confidence 467766632 24566666644 55677899977755443 35678898765
No 36
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=75.30 E-value=6.6 Score=24.59 Aligned_cols=47 Identities=17% Similarity=0.071 Sum_probs=27.9
Q ss_pred Ccchhhhh--HHHHHhhcCCCeEEEc-CCCcccccCChHh-HHHHHHHHHH
Q 040514 1 ENDFLKEQ--GMVLLESFVDPVVIYH-SKGHTIPRIDERG-QETMLSFIQK 47 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~vi~H-~gGH~VP~~~~~~-~~~~~~Fl~~ 47 (51)
+.|.+++. ++.+.+...+..+..- .+||.++-..++. .+.+.+|+++
T Consensus 243 ~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 293 (294)
T PLN02824 243 EKDPWEPVELGRAYANFDAVEDFIVLPGVGHCPQDEAPELVNPLIESFVAR 293 (294)
T ss_pred cCCCCCChHHHHHHHhcCCccceEEeCCCCCChhhhCHHHHHHHHHHHHhc
Confidence 35776663 6667776655444444 5799887754332 3345667653
No 37
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=72.44 E-value=4.5 Score=22.90 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=25.1
Q ss_pred Ccchhhh--hHHHHHhhcCCCeEEEcC-CCcccccCC
Q 040514 1 ENDFLKE--QGMVLLESFVDPVVIYHS-KGHTIPRID 34 (51)
Q Consensus 1 e~D~~~~--~s~~L~~~F~~p~vi~H~-gGH~VP~~~ 34 (51)
+.|.+++ ..+.+.+...+..++.-+ +||+++-..
T Consensus 185 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 221 (228)
T PF12697_consen 185 EDDPIVPPESAEELADKLPNAELVVIPGAGHFLFLEQ 221 (228)
T ss_dssp TTSSSSHHHHHHHHHHHSTTEEEEEETTSSSTHHHHS
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCccHHHC
Confidence 3577666 367788888887777777 899987754
No 38
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=72.33 E-value=15 Score=20.52 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=32.0
Q ss_pred cchhhhh--HHHHHhhcCCC-eEEEcCCCcccc-cCChHhHHHHHHHHH
Q 040514 2 NDFLKEQ--GMVLLESFVDP-VVIYHSKGHTIP-RIDERGQETMLSFIQ 46 (51)
Q Consensus 2 ~D~~~~~--s~~L~~~F~~p-~vi~H~gGH~VP-~~~~~~~~~~~~Fl~ 46 (51)
.|.+-|. ++.+.+.|.+. +|..+..||.+= ..+.-.-+.+.+||.
T Consensus 44 ~Dp~TP~~~a~~~~~~l~~s~lvt~~g~gHg~~~~~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 44 HDPVTPYEGARAMAARLPGSRLVTVDGAGHGVYAGGSPCVDKAVDDYLL 92 (103)
T ss_pred cCCCCcHHHHHHHHHHCCCceEEEEeccCcceecCCChHHHHHHHHHHH
Confidence 4666663 78999999865 567788899986 322235567888875
No 39
>PRK10566 esterase; Provisional
Probab=72.25 E-value=7.3 Score=23.67 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=30.3
Q ss_pred Ccchhhh--hHHHHHhhcCC---C--eE--EEcCCCcccccCChHhHHHHHHHHHHH
Q 040514 1 ENDFLKE--QGMVLLESFVD---P--VV--IYHSKGHTIPRIDERGQETMLSFIQKF 48 (51)
Q Consensus 1 e~D~~~~--~s~~L~~~F~~---p--~v--i~H~gGH~VP~~~~~~~~~~~~Fl~~~ 48 (51)
+.|.+++ .++.|.+.+.. + +. ++-..||.+- +...+.+.+||++.
T Consensus 195 ~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~---~~~~~~~~~fl~~~ 248 (249)
T PRK10566 195 LADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT---PEALDAGVAFFRQH 248 (249)
T ss_pred CCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC---HHHHHHHHHHHHhh
Confidence 4677777 37778887743 1 22 3345599863 46788899999863
No 40
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=71.07 E-value=5.6 Score=26.36 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=17.8
Q ss_pred EEEcCCCcccccCChHhHHHHHHHHH
Q 040514 21 VIYHSKGHTIPRIDERGQETMLSFIQ 46 (51)
Q Consensus 21 vi~H~gGH~VP~~~~~~~~~~~~Fl~ 46 (51)
+....+||.||---+.+.+.+.+||.
T Consensus 290 ~~V~~AGHmV~~qP~~al~m~~~fi~ 315 (319)
T PLN02213 290 ATIKAGGHTAEYRPNETFIMFQRWIS 315 (319)
T ss_pred EEEcCCCCCCCcCHHHHHHHHHHHHc
Confidence 55678999999633344556677774
No 41
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=70.35 E-value=3.3 Score=27.25 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=16.5
Q ss_pred EEEcCCCcccccCChH-hHHHHHHHHH
Q 040514 21 VIYHSKGHTIPRIDER-GQETMLSFIQ 46 (51)
Q Consensus 21 vi~H~gGH~VP~~~~~-~~~~~~~Fl~ 46 (51)
+....+||.||.-.++ +.+.+++||+
T Consensus 388 ~~V~~AGHmvP~dqP~~a~~m~~~fl~ 414 (415)
T PF00450_consen 388 VTVRGAGHMVPQDQPEAALQMFRRFLK 414 (415)
T ss_dssp EEETT--SSHHHHSHHHHHHHHHHHHC
T ss_pred EEEcCCcccChhhCHHHHHHHHHHHhc
Confidence 5668999999996543 3556667763
No 42
>PRK03592 haloalkane dehalogenase; Provisional
Probab=65.02 E-value=15 Score=23.04 Aligned_cols=49 Identities=4% Similarity=-0.039 Sum_probs=29.7
Q ss_pred Ccchhh-hh-HHHHH-hhcCCCe-EEEcCCCcccccCChHh-HHHHHHHHHHHh
Q 040514 1 ENDFLK-EQ-GMVLL-ESFVDPV-VIYHSKGHTIPRIDERG-QETMLSFIQKFQ 49 (51)
Q Consensus 1 e~D~~~-~~-s~~L~-~~F~~p~-vi~H~gGH~VP~~~~~~-~~~~~~Fl~~~~ 49 (51)
+.|.++ +. ..+++ +...+.. ++.-.+||+++...++. .+.+.+|+++..
T Consensus 237 ~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~v~~~i~~fl~~~~ 290 (295)
T PRK03592 237 EPGAILTTGAIRDWCRSWPNQLEITVFGAGLHFAQEDSPEEIGAAIAAWLRRLR 290 (295)
T ss_pred cCCcccCcHHHHHHHHHhhhhcceeeccCcchhhhhcCHHHHHHHHHHHHHHhc
Confidence 357666 43 33444 3445544 44457999999865544 366888887643
No 43
>COG3272 Uncharacterized conserved protein [Function unknown]
Probab=63.82 E-value=5.3 Score=25.25 Aligned_cols=44 Identities=16% Similarity=0.375 Sum_probs=32.6
Q ss_pred hhhHHHHHhhc---CCCe----EEEcCCCcccccCChHhHHHHHHHHHHHh
Q 040514 6 KEQGMVLLESF---VDPV----VIYHSKGHTIPRIDERGQETMLSFIQKFQ 49 (51)
Q Consensus 6 ~~~s~~L~~~F---~~p~----vi~H~gGH~VP~~~~~~~~~~~~Fl~~~~ 49 (51)
....+.|.... .+|. |+.|-.|++=|.++..+++.++++++.-+
T Consensus 67 ~~Yr~~l~~~L~h~a~~~~htNVLmHvqGYF~~~L~s~er~~l~e~Ie~YR 117 (163)
T COG3272 67 NEYRERLMQLLSHPAKPKNHTNVLMHVQGYFSRHLNSEERQELAELIESYR 117 (163)
T ss_pred HHHHHHHHHHHhCcCCcccchhHHHHHHhhccHhhchHHHHHHHHHHHHHH
Confidence 33455555554 3333 88899999999998889999999988654
No 44
>PRK03204 haloalkane dehalogenase; Provisional
Probab=63.47 E-value=16 Score=23.19 Aligned_cols=45 Identities=18% Similarity=0.088 Sum_probs=29.3
Q ss_pred Ccchhh-hh--HHHHHhhcCCCe-EEEcCCCcccccCChHh-HHHHHHHH
Q 040514 1 ENDFLK-EQ--GMVLLESFVDPV-VIYHSKGHTIPRIDERG-QETMLSFI 45 (51)
Q Consensus 1 e~D~~~-~~--s~~L~~~F~~p~-vi~H~gGH~VP~~~~~~-~~~~~~Fl 45 (51)
+.|.++ +. ++.+.+.+.+-. ++.-.+||.++-..++. .+.+.+|+
T Consensus 236 ~~D~~~~~~~~~~~~~~~ip~~~~~~i~~aGH~~~~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 236 MKDVAFRPKTILPRLRATFPDHVLVELPNAKHFIQEDAPDRIAAAIIERF 285 (286)
T ss_pred CCCcccCcHHHHHHHHHhcCCCeEEEcCCCcccccccCHHHHHHHHHHhc
Confidence 468765 33 477889998755 44567999999865543 33355554
No 45
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=63.24 E-value=8.6 Score=26.93 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=18.8
Q ss_pred EEEcCCCcccccCChHhHHHHHHHHH
Q 040514 21 VIYHSKGHTIPRIDERGQETMLSFIQ 46 (51)
Q Consensus 21 vi~H~gGH~VP~~~~~~~~~~~~Fl~ 46 (51)
+....+||.||---+.+...+.+|+.
T Consensus 404 v~V~~AGHmVp~qP~~al~m~~~Fi~ 429 (433)
T PLN03016 404 ATIKAGGHTAEYRPNETFIMFQRWIS 429 (433)
T ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHc
Confidence 66689999999644445666777875
No 46
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=62.35 E-value=9.1 Score=27.36 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=19.0
Q ss_pred EEcCCCcccccCChHh-HHHHHHHHHH
Q 040514 22 IYHSKGHTIPRIDERG-QETMLSFIQK 47 (51)
Q Consensus 22 i~H~gGH~VP~~~~~~-~~~~~~Fl~~ 47 (51)
-...+||+||-..++. +..+.+||..
T Consensus 421 tVrGaGH~VP~~~p~~al~m~~~fl~g 447 (454)
T KOG1282|consen 421 TVRGAGHMVPYDKPESALIMFQRFLNG 447 (454)
T ss_pred EEeCCcccCCCCCcHHHHHHHHHHHcC
Confidence 3368999999987544 4678888753
No 47
>PF07286 DUF1445: Protein of unknown function (DUF1445); InterPro: IPR009906 This family represents a conserved region approximately 150 residues long within a number of hypothetical bacterial and eukaryotic proteins of unknown function.; PDB: 3DB9_A 2PIF_A.
Probab=60.40 E-value=11 Score=23.30 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=16.7
Q ss_pred HHHHHhhcCCCeEEEcCCCccc
Q 040514 9 GMVLLESFVDPVVIYHSKGHTI 30 (51)
Q Consensus 9 s~~L~~~F~~p~vi~H~gGH~V 30 (51)
++..+....-|++|.|..||..
T Consensus 119 pq~av~~a~~~~~itHaPG~M~ 140 (143)
T PF07286_consen 119 PQEAVMSAKPPLAITHAPGHMF 140 (143)
T ss_dssp HHHHHHHCT-SEEEEEBTTB-E
T ss_pred hHHHHHhCCCCeeEEeCCCceE
Confidence 4667777788999999999975
No 48
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=60.29 E-value=22 Score=23.25 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=30.0
Q ss_pred Ccchhhhh--HHHHHhhcCCC--eEEEcCCCcccccCChHhH----HHHHHHHHH
Q 040514 1 ENDFLKEQ--GMVLLESFVDP--VVIYHSKGHTIPRIDERGQ----ETMLSFIQK 47 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p--~vi~H~gGH~VP~~~~~~~----~~~~~Fl~~ 47 (51)
++|.++|. ++.+.+...++ .++.-++||.-+-.+.... ..+.+||.+
T Consensus 295 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 295 ERDHLVPPDASKALNDLVSSEDYTELSFPGGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred CCCCcCCHHHHHHHHHHcCCCCeEEEEcCCCCEEEEECchhHhhhhHHHHHHHHh
Confidence 46877773 67788887643 3344579999988654322 446667653
No 49
>PRK07868 acyl-CoA synthetase; Validated
Probab=59.85 E-value=21 Score=27.11 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=33.6
Q ss_pred Ccchhhhh--HHHHHhhcCCCe--EEEcCCCcccccCChHhH----HHHHHHHHH
Q 040514 1 ENDFLKEQ--GMVLLESFVDPV--VIYHSKGHTIPRIDERGQ----ETMLSFIQK 47 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~--vi~H~gGH~VP~~~~~~~----~~~~~Fl~~ 47 (51)
+.|.++|. ++.+.+...+.. .+.-++||+-+-.+.... ..+.+||.+
T Consensus 306 ~~D~ivp~~~~~~l~~~i~~a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~ 360 (994)
T PRK07868 306 EVDDIGQPASVRGIRRAAPNAEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKW 360 (994)
T ss_pred CCCCCCCHHHHHHHHHhCCCCeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHH
Confidence 46887774 677888887765 466899999776654444 357788875
No 50
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=59.69 E-value=14 Score=23.03 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=30.9
Q ss_pred cchhhhhHHHHHhhcCCCeEEEcCCCcccccCChHhHHHHHHHHH
Q 040514 2 NDFLKEQGMVLLESFVDPVVIYHSKGHTIPRIDERGQETMLSFIQ 46 (51)
Q Consensus 2 ~D~~~~~s~~L~~~F~~p~vi~H~gGH~VP~~~~~~~~~~~~Fl~ 46 (51)
.|.+.+..+.+...=....++.-.|+|-.-... +....+.+|++
T Consensus 144 ~DEvLd~~~a~~~~~~~~~~i~~ggdH~f~~f~-~~l~~i~~f~~ 187 (187)
T PF05728_consen 144 GDEVLDYREAVAKYRGCAQIIEEGGDHSFQDFE-EYLPQIIAFLQ 187 (187)
T ss_pred CCcccCHHHHHHHhcCceEEEEeCCCCCCccHH-HHHHHHHHhhC
Confidence 577777655544433446678888899998876 57888888863
No 51
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=59.00 E-value=29 Score=22.06 Aligned_cols=44 Identities=9% Similarity=0.068 Sum_probs=29.3
Q ss_pred Ccchhhhh--HHHHHhhcCCCeEEEcCCCcccccCChHhHHHHHHHHHH
Q 040514 1 ENDFLKEQ--GMVLLESFVDPVVIYHSKGHTIPRIDERGQETMLSFIQK 47 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~vi~H~gGH~VP~~~~~~~~~~~~Fl~~ 47 (51)
++|.++|. ++.+++......+..-++||...-+.++ .+.+.|.+
T Consensus 220 ~~D~~ip~~~~~~m~~~~~~~~~~~l~~gH~p~ls~P~---~~~~~i~~ 265 (273)
T PLN02211 220 LHDHVVKPEQQEAMIKRWPPSQVYELESDHSPFFSTPF---LLFGLLIK 265 (273)
T ss_pred CCCCCCCHHHHHHHHHhCCccEEEEECCCCCccccCHH---HHHHHHHH
Confidence 46888774 6778888876666666899976665442 34555544
No 52
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=58.27 E-value=11 Score=22.63 Aligned_cols=49 Identities=27% Similarity=0.447 Sum_probs=28.5
Q ss_pred Ccchhhhh--HHHHHhhcCC---Ce--EEEcCCCcccccCC--hHhHHHHHHHHHHHh
Q 040514 1 ENDFLKEQ--GMVLLESFVD---PV--VIYHSKGHTIPRID--ERGQETMLSFIQKFQ 49 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~---p~--vi~H~gGH~VP~~~--~~~~~~~~~Fl~~~~ 49 (51)
++|.++|. |..|.+.... +. ++.-.+||.+..-. ......+.+|+++..
T Consensus 153 ~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l 210 (213)
T PF00326_consen 153 ENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYL 210 (213)
T ss_dssp TTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHc
Confidence 46877763 6666666521 23 55577899776432 234556777887653
No 53
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=57.38 E-value=20 Score=24.59 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=29.9
Q ss_pred Ccchhhhh--HHHHHhhcC----CCeEE-Ec-CCCcccccCChH-hHHHHHHHHHH
Q 040514 1 ENDFLKEQ--GMVLLESFV----DPVVI-YH-SKGHTIPRIDER-GQETMLSFIQK 47 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~----~p~vi-~H-~gGH~VP~~~~~-~~~~~~~Fl~~ 47 (51)
+.|.+.|. ++++.+.+. +..+. .. +.||..+-..++ ..+.+++|+++
T Consensus 332 ~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 332 KQDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGHMAGVFDIHLFEKKIYEFLNR 387 (389)
T ss_pred CCCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCcchhhcCHHHHHHHHHHHHcc
Confidence 46877773 677888885 33332 33 479999876543 34557788764
No 54
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=57.21 E-value=19 Score=18.98 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=24.8
Q ss_pred HHHhhc-----CCCeEEEcCC--CcccccCChH-hHHHHHHHHHHH
Q 040514 11 VLLESF-----VDPVVIYHSK--GHTIPRIDER-GQETMLSFIQKF 48 (51)
Q Consensus 11 ~L~~~F-----~~p~vi~H~g--GH~VP~~~~~-~~~~~~~Fl~~~ 48 (51)
.+++.| .-|.++.... |..++..... ..+.+.+|++++
T Consensus 57 ~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 57 RHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred HHHHHcCCChhhCCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence 355555 2477666555 6666665443 678899999875
No 55
>PLN02209 serine carboxypeptidase
Probab=57.04 E-value=13 Score=26.12 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=18.9
Q ss_pred EEEcCCCcccccCChHhHHHHHHHHH
Q 040514 21 VIYHSKGHTIPRIDERGQETMLSFIQ 46 (51)
Q Consensus 21 vi~H~gGH~VP~~~~~~~~~~~~Fl~ 46 (51)
+....+||.||---+.+.+.+.+|+.
T Consensus 408 v~V~~AGHmVp~qP~~al~m~~~fi~ 433 (437)
T PLN02209 408 ATVKGGGHTAEYLPEESSIMFQRWIS 433 (437)
T ss_pred EEEcCCCCCcCcCHHHHHHHHHHHHc
Confidence 56689999999644455666777875
No 56
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=56.63 E-value=24 Score=24.17 Aligned_cols=46 Identities=9% Similarity=-0.028 Sum_probs=27.7
Q ss_pred Ccchhhhh--HHHHHhhcCCCeEEEcCCCcccccCChHh-HHHHHHHHH
Q 040514 1 ENDFLKEQ--GMVLLESFVDPVVIYHSKGHTIPRIDERG-QETMLSFIQ 46 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~vi~H~gGH~VP~~~~~~-~~~~~~Fl~ 46 (51)
+.|.+++. ++++++.....+++.=.+||+++-..++. .+.+.+|+.
T Consensus 334 ~~D~~v~~~~~~~~a~~~~a~l~vIp~aGH~~~~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 334 LRDRWLNYDGVEDFCKSSQHKLIELPMAGHHVQEDCGEELGGIISGILS 382 (383)
T ss_pred CCCCCcCHHHHHHHHHhcCCeEEEECCCCCCcchhCHHHHHHHHHHHhh
Confidence 35665553 66777765334455566799999865332 444666664
No 57
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=56.63 E-value=21 Score=26.80 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=29.1
Q ss_pred cchhhh--hHHHHHhhcC----CCeEEEcCCCcccccCC--hHhHHHHHHHHHH
Q 040514 2 NDFLKE--QGMVLLESFV----DPVVIYHSKGHTIPRID--ERGQETMLSFIQK 47 (51)
Q Consensus 2 ~D~~~~--~s~~L~~~F~----~p~vi~H~gGH~VP~~~--~~~~~~~~~Fl~~ 47 (51)
.|+.++ .+.++.+... +..++.|++||.-|... .+..+.+.+|++.
T Consensus 465 ~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g~H~~~~~~~~~d~~e~~~~Wfd~ 518 (767)
T PRK05371 465 NDWNVKPKQVYQWWDALPENGVPKKLFLHQGGHVYPNNWQSIDFRDTMNAWFTH 518 (767)
T ss_pred CCCCCChHHHHHHHHHHHhcCCCeEEEEeCCCccCCCchhHHHHHHHHHHHHHh
Confidence 466554 3667777764 24478899999776532 1345567788765
No 58
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=54.91 E-value=43 Score=20.10 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=32.4
Q ss_pred cchhhh--hHHHHHhhcCC-Ce--EEEcCCCcccccC-Ch---HhHHHHHHHHHHH
Q 040514 2 NDFLKE--QGMVLLESFVD-PV--VIYHSKGHTIPRI-DE---RGQETMLSFIQKF 48 (51)
Q Consensus 2 ~D~~~~--~s~~L~~~F~~-p~--vi~H~gGH~VP~~-~~---~~~~~~~~Fl~~~ 48 (51)
.|.++| .++++.+...+ |. ++.-.++|..+.. .+ .....+.+|+.+.
T Consensus 242 ~D~~vp~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~ 297 (299)
T COG1073 242 RDEVVPLRDAEDLYEAARERPKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERH 297 (299)
T ss_pred CCcccchhhhHHHHhhhccCCceEEEecCCccccccCccHHHHHHHHHHHHHHHHh
Confidence 577777 38889999987 65 3456788888742 22 3566677887764
No 59
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=49.47 E-value=13 Score=19.32 Aligned_cols=40 Identities=23% Similarity=0.512 Sum_probs=29.4
Q ss_pred HHHHHhhcC---CCeEEEcCCCcccccCChH-hHHHHHHHHHHH
Q 040514 9 GMVLLESFV---DPVVIYHSKGHTIPRIDER-GQETMLSFIQKF 48 (51)
Q Consensus 9 s~~L~~~F~---~p~vi~H~gGH~VP~~~~~-~~~~~~~Fl~~~ 48 (51)
...|++.|. =|.++.-.+|..+.+.... ..+.|.+||++.
T Consensus 60 ~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 60 NKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp SHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred cchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHHHHcC
Confidence 456777773 3888888888888775444 677899999863
No 60
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=49.33 E-value=34 Score=21.89 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=22.2
Q ss_pred Ccchhhhh--HHHHHhhcCCCeEEEcC-CCcccccCChHh-HHHHHHHHH
Q 040514 1 ENDFLKEQ--GMVLLESFVDPVVIYHS-KGHTIPRIDERG-QETMLSFIQ 46 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~vi~H~-gGH~VP~~~~~~-~~~~~~Fl~ 46 (51)
+.|.+++. ++.+ ..+-.+..-+ +||+..-..++. .+.+.+|++
T Consensus 323 ~~D~~vp~~~~~~l---~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 369 (371)
T PRK14875 323 EQDRIIPAAHAQGL---PDGVAVHVLPGAGHMPQMEAAADVNRLLAEFLG 369 (371)
T ss_pred CCCCccCHHHHhhc---cCCCeEEEeCCCCCChhhhCHHHHHHHHHHHhc
Confidence 35776663 3333 3334455555 899876644322 233445554
No 61
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=48.79 E-value=26 Score=20.19 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=25.1
Q ss_pred Ccchhhhh--HHHHHhhcCCCeEEEcCC-CcccccCCh
Q 040514 1 ENDFLKEQ--GMVLLESFVDPVVIYHSK-GHTIPRIDE 35 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~vi~H~g-GH~VP~~~~ 35 (51)
+.|.+.|. +..+.+.+.+...+.=++ ||...-...
T Consensus 184 ~~D~~~p~~~~~~~~~~~~~~~~~~~~~~GH~~~~~~~ 221 (230)
T PF00561_consen 184 EDDPLVPPESSEQLAKLIPNSQLVLIEGSGHFAFLEGP 221 (230)
T ss_dssp TTCSSSHHHHHHHHHHHSTTEEEEEETTCCSTHHHHSH
T ss_pred CCCCCCCHHHHHHHHHhcCCCEEEECCCCChHHHhcCH
Confidence 35776663 677899998877666555 999877543
No 62
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=48.69 E-value=52 Score=22.78 Aligned_cols=30 Identities=23% Similarity=0.492 Sum_probs=22.0
Q ss_pred eEEEcCCCcccccCChHh-HHHHHHHHHHHh
Q 040514 20 VVIYHSKGHTIPRIDERG-QETMLSFIQKFQ 49 (51)
Q Consensus 20 ~vi~H~gGH~VP~~~~~~-~~~~~~Fl~~~~ 49 (51)
.++.=.+||+|.-.+++. .+.+.+|++++.
T Consensus 291 ~vv~~~~gH~vqqe~p~~v~~~i~~f~~~~~ 321 (322)
T KOG4178|consen 291 RVVIEGIGHFVQQEKPQEVNQAILGFINSFS 321 (322)
T ss_pred eEEecCCcccccccCHHHHHHHHHHHHHhhc
Confidence 345556899999977644 556889998875
No 63
>PF12875 DUF3826: Protein of unknown function (DUF3826); InterPro: IPR024284 This is a putative sugar-binding family.; PDB: 3KDW_A 3G6I_A.
Probab=48.26 E-value=20 Score=23.14 Aligned_cols=21 Identities=14% Similarity=0.536 Sum_probs=15.8
Q ss_pred ccccCChHhHHHHHHHHHHHh
Q 040514 29 TIPRIDERGQETMLSFIQKFQ 49 (51)
Q Consensus 29 ~VP~~~~~~~~~~~~Fl~~~~ 49 (51)
.||.+.+..+..+..||.+.+
T Consensus 121 mvP~Lteeek~~I~~~L~eAR 141 (188)
T PF12875_consen 121 MVPSLTEEEKAQILTWLKEAR 141 (188)
T ss_dssp H-TT--HHHHHHHHHHHHHHH
T ss_pred HcCcccHHHHHHHHHHHHHHH
Confidence 589999999999999998765
No 64
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=47.85 E-value=23 Score=24.80 Aligned_cols=29 Identities=31% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCCeEEE-cCCCcccccCChHhHHHHHHHHH
Q 040514 17 VDPVVIY-HSKGHTIPRIDERGQETMLSFIQ 46 (51)
Q Consensus 17 ~~p~vi~-H~gGH~VP~~~~~~~~~~~~Fl~ 46 (51)
.||++|+ |.||=+++.+. .+...+.++..
T Consensus 121 ~DpVlIYlHGGGY~l~~~p-~qi~~L~~i~~ 150 (374)
T PF10340_consen 121 SDPVLIYLHGGGYFLGTTP-SQIEFLLNIYK 150 (374)
T ss_pred CCcEEEEEcCCeeEecCCH-HHHHHHHHHHH
Confidence 3688777 99999999975 46655555544
No 65
>PRK11071 esterase YqiA; Provisional
Probab=47.77 E-value=38 Score=20.56 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=28.8
Q ss_pred cchhhhh--HHHHHhhcCCCeEEEcCCCcccccCChHhHHHHHHHHH
Q 040514 2 NDFLKEQ--GMVLLESFVDPVVIYHSKGHTIPRIDERGQETMLSFIQ 46 (51)
Q Consensus 2 ~D~~~~~--s~~L~~~F~~p~vi~H~gGH~VP~~~~~~~~~~~~Fl~ 46 (51)
.|.++|. |..+.+.+. .++.=.|+|..-.. +...+.+.+|+.
T Consensus 146 ~De~V~~~~a~~~~~~~~--~~~~~ggdH~f~~~-~~~~~~i~~fl~ 189 (190)
T PRK11071 146 GDEVLDYRQAVAYYAACR--QTVEEGGNHAFVGF-ERYFNQIVDFLG 189 (190)
T ss_pred CCCcCCHHHHHHHHHhcc--eEEECCCCcchhhH-HHhHHHHHHHhc
Confidence 6888884 777888763 33334468999666 457777888864
No 66
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.68 E-value=22 Score=28.85 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=22.8
Q ss_pred cchhhhhHHHHHhhc----CCCeEEEcCCCcccccC
Q 040514 2 NDFLKEQGMVLLESF----VDPVVIYHSKGHTIPRI 33 (51)
Q Consensus 2 ~D~~~~~s~~L~~~F----~~p~vi~H~gGH~VP~~ 33 (51)
+|..++-...|+..+ .+-.|+.|=-||-||.-
T Consensus 166 lDP~vddVrKlc~slRr~ak~eRvLFHYNGHGVPkP 201 (1387)
T KOG1517|consen 166 LDPTVDDVRKLCTSLRRNAKEERVLFHYNGHGVPKP 201 (1387)
T ss_pred cCCcHHHHHHHHHHHhhhcCCceEEEEecCCCCCCC
Confidence 455555455555555 56779999999999983
No 67
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=47.41 E-value=67 Score=21.84 Aligned_cols=48 Identities=13% Similarity=0.220 Sum_probs=29.1
Q ss_pred Ccchhhhh-HHHHHhhcCC--CeEEEcCCCcccccCChHh-HHHHHHHHHHH
Q 040514 1 ENDFLKEQ-GMVLLESFVD--PVVIYHSKGHTIPRIDERG-QETMLSFIQKF 48 (51)
Q Consensus 1 e~D~~~~~-s~~L~~~F~~--p~vi~H~gGH~VP~~~~~~-~~~~~~Fl~~~ 48 (51)
+.|++.+. +..+.+.... -+++.-.+||+++--.++. .+.+.+|++.+
T Consensus 334 ~~D~i~~~~~~~~~~~~~~~~~~~~i~~aGH~~~~E~P~~f~~~l~~~~~~~ 385 (402)
T PLN02894 334 RHDWMNYEGAVEARKRMKVPCEIIRVPQGGHFVFLDNPSGFHSAVLYACRKY 385 (402)
T ss_pred CCCCCCcHHHHHHHHHcCCCCcEEEeCCCCCeeeccCHHHHHHHHHHHHHHh
Confidence 35776654 4455555432 2566788999988865433 44566666654
No 68
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=46.72 E-value=21 Score=18.58 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=19.8
Q ss_pred CCCeEEEcCCC--ccccc--CChHhHHHHHHHHH
Q 040514 17 VDPVVIYHSKG--HTIPR--IDERGQETMLSFIQ 46 (51)
Q Consensus 17 ~~p~vi~H~gG--H~VP~--~~~~~~~~~~~Fl~ 46 (51)
.+..++.| |+ ||||. +++..++.-..|+.
T Consensus 19 ~~gy~vpH-gdH~HyI~k~dLs~~E~~aA~~~~~ 51 (53)
T PF04270_consen 19 GDGYVVPH-GDHFHYIPKSDLSASELKAAQAYLA 51 (53)
T ss_dssp SSEEEEEE-TTEEEEEEGGGS-HHHHHHHHHHHH
T ss_pred CCeEEeeC-CCcccCCchhhCCHHHHHHHHHHHh
Confidence 56789999 45 68998 45555666666765
No 69
>PLN02511 hydrolase
Probab=45.87 E-value=41 Score=22.71 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=29.1
Q ss_pred CcchhhhhH---HHHHhhcCCCeEE-EcCCCcccccCChH-------hHHHHHHHHHHHh
Q 040514 1 ENDFLKEQG---MVLLESFVDPVVI-YHSKGHTIPRIDER-------GQETMLSFIQKFQ 49 (51)
Q Consensus 1 e~D~~~~~s---~~L~~~F~~p~vi-~H~gGH~VP~~~~~-------~~~~~~~Fl~~~~ 49 (51)
+.|.+++.+ ..+++...+..++ .-.|||.-.-..+. .-+.+.+|++.+.
T Consensus 307 ~dDpi~p~~~~~~~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~ 366 (388)
T PLN02511 307 ANDPIAPARGIPREDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALE 366 (388)
T ss_pred CCCCcCCcccCcHhHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHH
Confidence 357766642 3466666665544 45689975543321 2467889998764
No 70
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=44.77 E-value=26 Score=20.44 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=29.8
Q ss_pred HHHHHhhcC---CCeEEEcCCCcccccCChHhHHHHHHHHHHH
Q 040514 9 GMVLLESFV---DPVVIYHSKGHTIPRIDERGQETMLSFIQKF 48 (51)
Q Consensus 9 s~~L~~~F~---~p~vi~H~gGH~VP~~~~~~~~~~~~Fl~~~ 48 (51)
..+|+..|. =|+++....|..|.-.....++.+.+||+++
T Consensus 76 ~~~La~~~~I~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 76 DAKVAKKLGLDEEDSIYVFKDDEVIEYDGEFAADTLVEFLLDL 118 (120)
T ss_pred CHHHHHHcCCccccEEEEEECCEEEEeeCCCCHHHHHHHHHHH
Confidence 457888882 3887777788888754555788899999876
No 71
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=44.06 E-value=28 Score=17.52 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=23.8
Q ss_pred HHHHHhhcCCCeEEEcCCCcccccCChHhHHHHHHHHHHHh
Q 040514 9 GMVLLESFVDPVVIYHSKGHTIPRIDERGQETMLSFIQKFQ 49 (51)
Q Consensus 9 s~~L~~~F~~p~vi~H~gGH~VP~~~~~~~~~~~~Fl~~~~ 49 (51)
.+.+.++|.+..++.+| +.. . ..++.+++|++.+.
T Consensus 13 ~~~i~~~~~~d~~~~~~-~~~--~---~g~~~~~~~~~~~~ 47 (102)
T PF12680_consen 13 LDAIAALFAPDAVFHDP-GGT--L---RGREAIREFFEEFF 47 (102)
T ss_dssp HHHHHHTEEEEEEEEET-TSE--E---ESHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeC-CCc--c---cCHHHHHHHHHHHH
Confidence 46788999888888888 444 1 24556777776553
No 72
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=43.82 E-value=20 Score=19.75 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=13.3
Q ss_pred cccCChHhHHHHHHHHHHHhc
Q 040514 30 IPRIDERGQETMLSFIQKFQM 50 (51)
Q Consensus 30 VP~~~~~~~~~~~~Fl~~~~~ 50 (51)
||.++ +..++|.+|++..+.
T Consensus 60 i~~L~-epiDVY~~wiD~~~~ 79 (81)
T PF05129_consen 60 INPLS-EPIDVYSEWIDACEE 79 (81)
T ss_dssp --SS---TTHHHHHHHHHHH-
T ss_pred cCccC-cccchhHHHHHHHHh
Confidence 68887 588999999998763
No 73
>PF08121 Toxin_33: Waglerin family; InterPro: IPR012637 This family consists of the lethal peptides (waglerins) that are found in the venom of Trimeresurus wagleri (Wagler's pit viper) (Tropidolaemus wagleri). Waglerins are 22-24 residue lethal peptides and are competitive antagonist of the muscle nicotinic receptor (nAChR). Waglerin-1 possesses a distinctive selectivity for the alpha-epsilon interface binding site of the mouse nAChR [].; GO: 0030550 acetylcholine receptor inhibitor activity, 0005576 extracellular region
Probab=41.59 E-value=13 Score=15.99 Aligned_cols=11 Identities=36% Similarity=0.422 Sum_probs=8.3
Q ss_pred cCCCcccccCC
Q 040514 24 HSKGHTIPRID 34 (51)
Q Consensus 24 H~gGH~VP~~~ 34 (51)
-|.-||||+-+
T Consensus 10 yppchyiprpk 20 (22)
T PF08121_consen 10 YPPCHYIPRPK 20 (22)
T ss_pred CCCccccCCCC
Confidence 46679999864
No 74
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.32 E-value=28 Score=23.17 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=15.6
Q ss_pred EEEcCCCcccccCChHhHHHHHHHHHH
Q 040514 21 VIYHSKGHTIPRIDERGQETMLSFIQK 47 (51)
Q Consensus 21 vi~H~gGH~VP~~~~~~~~~~~~Fl~~ 47 (51)
.-.-+|||+.+... .+.+.++|.+
T Consensus 208 l~~fdGgHFfl~~~---~~~v~~~i~~ 231 (244)
T COG3208 208 LRVFDGGHFFLNQQ---REEVLARLEQ 231 (244)
T ss_pred EEEecCcceehhhh---HHHHHHHHHH
Confidence 44589999999953 3345555543
No 75
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=39.79 E-value=22 Score=24.81 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=26.8
Q ss_pred Ccchhhhh--HHHHHhhcCCCeEEEcCCCcccccCC
Q 040514 1 ENDFLKEQ--GMVLLESFVDPVVIYHSKGHTIPRID 34 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~vi~H~gGH~VP~~~ 34 (51)
+.|.-+|+ ..+|.+.-.+.-|-+.+|||.-=-+-
T Consensus 298 ~~DaYVPr~~v~~Lq~~WPGsEvR~l~gGHVsA~L~ 333 (348)
T PF09752_consen 298 KNDAYVPRHGVLSLQEIWPGSEVRYLPGGHVSAYLL 333 (348)
T ss_pred cCceEechhhcchHHHhCCCCeEEEecCCcEEEeee
Confidence 35776775 46899999999999999999876654
No 76
>PRK10985 putative hydrolase; Provisional
Probab=38.92 E-value=82 Score=20.39 Aligned_cols=48 Identities=6% Similarity=-0.086 Sum_probs=28.5
Q ss_pred Ccchhhhh--HHHHHhhcCCCe-EEEcCCCcccccCC------hHhHHHHHHHHHHH
Q 040514 1 ENDFLKEQ--GMVLLESFVDPV-VIYHSKGHTIPRID------ERGQETMLSFIQKF 48 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~-vi~H~gGH~VP~~~------~~~~~~~~~Fl~~~ 48 (51)
+.|.+.+. ...+.+.+.+-. ++.=.|||+..-.. .+.-+.+.+|++.+
T Consensus 264 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~ 320 (324)
T PRK10985 264 KDDPFMTHEVIPKPESLPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTY 320 (324)
T ss_pred CCCCCCChhhChHHHHhCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHh
Confidence 35666553 344556665544 45567899866532 24456677888765
No 77
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.11 E-value=57 Score=22.30 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=21.6
Q ss_pred HHHHHhhcC---C----CeEEEcCCCcccccCChHhHHHHHHHHHHHh
Q 040514 9 GMVLLESFV---D----PVVIYHSKGHTIPRIDERGQETMLSFIQKFQ 49 (51)
Q Consensus 9 s~~L~~~F~---~----p~vi~H~gGH~VP~~~~~~~~~~~~Fl~~~~ 49 (51)
+.++++.+- + .+|+.|+||-| ..+ .+.+..|.+.+.
T Consensus 138 ha~~l~~mg~~~~~~~~~~iviH~Gg~~--gdk---~~alerf~~n~~ 180 (312)
T TIGR00629 138 HDEMLSAMKLAEQLNKDAVIIIHIGGAF--GNK---DTTLARFHQNYK 180 (312)
T ss_pred HHHHHHHcCCCcccCCCceEEEccCcCC--CCH---HHHHHHHHHHHH
Confidence 445555553 1 58899999998 322 234666665543
No 78
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=36.89 E-value=86 Score=18.13 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=26.1
Q ss_pred hHHHHHhhcCCCeEEEcCC--CcccccCChHhHHHHHHHHHHH
Q 040514 8 QGMVLLESFVDPVVIYHSK--GHTIPRIDERGQETMLSFIQKF 48 (51)
Q Consensus 8 ~s~~L~~~F~~p~vi~H~g--GH~VP~~~~~~~~~~~~Fl~~~ 48 (51)
+..+++..+.-+.+..|+| +..-+...++..+.+.+.++++
T Consensus 75 ~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l 117 (213)
T PF01261_consen 75 KAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLREL 117 (213)
T ss_dssp HHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHH
Confidence 3566777777788999988 4444444444555555555543
No 79
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=36.01 E-value=30 Score=25.40 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=18.7
Q ss_pred CCCeEEEcCCCcccccCChHhHHHHHH
Q 040514 17 VDPVVIYHSKGHTIPRIDERGQETMLS 43 (51)
Q Consensus 17 ~~p~vi~H~gGH~VP~~~~~~~~~~~~ 43 (51)
++.+++.|++||.+=..+=..+-++..
T Consensus 412 ~~~l~vfhr~g~vwd~~sfd~~f~~~~ 438 (501)
T KOG3567|consen 412 KNNLVVFHRGGHVWDGNSFDSKFVYQQ 438 (501)
T ss_pred ccceEEEccCCceEeechhhhhhhhhc
Confidence 457799999999987765444444443
No 80
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=35.38 E-value=19 Score=22.96 Aligned_cols=12 Identities=42% Similarity=0.642 Sum_probs=8.6
Q ss_pred EEEcCC-----Cccccc
Q 040514 21 VIYHSK-----GHTIPR 32 (51)
Q Consensus 21 vi~H~g-----GH~VP~ 32 (51)
||.|.| |||+=-
T Consensus 246 vI~H~G~~~~~GHY~~~ 262 (305)
T cd02657 246 VITHQGRSADSGHYVAW 262 (305)
T ss_pred EEEecCCCCCCcEEEEE
Confidence 677765 898754
No 81
>COG1650 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.13 E-value=16 Score=24.64 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=12.6
Q ss_pred eEEEcCCCcccccCCh
Q 040514 20 VVIYHSKGHTIPRIDE 35 (51)
Q Consensus 20 ~vi~H~gGH~VP~~~~ 35 (51)
..+--.||||+|...+
T Consensus 183 ~avg~GGgHYap~~t~ 198 (266)
T COG1650 183 AAVGFGGGHYAPKQTK 198 (266)
T ss_pred eeEeecCcceeehhhh
Confidence 4566889999999654
No 82
>PF10040 DUF2276: Uncharacterized conserved protein (DUF2276); InterPro: IPR019267 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily []. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea []. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes []. This entry represents a domain found in some CRISPR-associated proteins Cas6 and in uncharacterised proteins.
Probab=34.97 E-value=56 Score=18.09 Aligned_cols=33 Identities=18% Similarity=0.456 Sum_probs=19.6
Q ss_pred cCCCeEEEcCCCcccccCChHhHHHHHHHHHHHh
Q 040514 16 FVDPVVIYHSKGHTIPRIDERGQETMLSFIQKFQ 49 (51)
Q Consensus 16 F~~p~vi~H~gGH~VP~~~~~~~~~~~~Fl~~~~ 49 (51)
|.-|+.+.+ +|.++++.-+.....+++.+.++.
T Consensus 3 F~TPt~~~~-~~~~~~~~~P~~~~i~~sl~~r~~ 35 (121)
T PF10040_consen 3 FLTPTRFKQ-RGRYVPRFFPSPRLIFRSLLRRWN 35 (121)
T ss_pred EECCeeEEE-CCEeeeccCCCHHHHHHHHHHHHH
Confidence 667888888 566666443334444555555543
No 83
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=34.88 E-value=21 Score=23.41 Aligned_cols=11 Identities=45% Similarity=0.736 Sum_probs=8.2
Q ss_pred EEEcCC-----Ccccc
Q 040514 21 VIYHSK-----GHTIP 31 (51)
Q Consensus 21 vi~H~g-----GH~VP 31 (51)
||.|.| |||+=
T Consensus 248 Vi~H~G~~~~~GHY~a 263 (327)
T cd02664 248 VVVHSGYSSESGHYFT 263 (327)
T ss_pred EEEEccCCCCCcceEE
Confidence 777755 99974
No 84
>PF01133 ER: Enhancer of rudimentary; InterPro: IPR000781 The Drosophila protein 'enhancer of rudimentary' (gene (e(r)) is a small protein of 104 residues whose function is not yet clear. From an evolutionary point of view, it is highly conserved [] and has been found to exist in probably all multicellular eukaryotic organisms. It has been proposed that this protein plays a role in the cell cycle.; GO: 0007049 cell cycle; PDB: 1W9G_A 2NML_A 1WWQ_A 1WZ7_B.
Probab=34.53 E-value=31 Score=20.21 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=21.7
Q ss_pred CCeEEEcCCCcccccCChHhHHHHHHHHHH
Q 040514 18 DPVVIYHSKGHTIPRIDERGQETMLSFIQK 47 (51)
Q Consensus 18 ~p~vi~H~gGH~VP~~~~~~~~~~~~Fl~~ 47 (51)
..+|...+.+-|+|..+++-|+.+-..|.+
T Consensus 68 scLV~~~~~~~Y~P~nK~WIKeki~~~L~~ 97 (102)
T PF01133_consen 68 SCLVYDKSTNAYVPHNKQWIKEKIFQHLRK 97 (102)
T ss_dssp EEEEEETTTTEEEEE-HHHHHHHHHHHHHC
T ss_pred ceEEEeCCCCccCCCCHHHHHHHHHHHHHH
Confidence 367888889999999887767666655543
No 85
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=34.31 E-value=21 Score=23.87 Aligned_cols=11 Identities=45% Similarity=0.721 Sum_probs=8.9
Q ss_pred EEEcCC-----Ccccc
Q 040514 21 VIYHSK-----GHTIP 31 (51)
Q Consensus 21 vi~H~g-----GH~VP 31 (51)
||.|.| |||+=
T Consensus 277 VI~H~G~~~~~GHY~a 292 (332)
T cd02671 277 VVMHSGATISSGHYTA 292 (332)
T ss_pred EEEEcCCCCCCCeEEE
Confidence 788877 99874
No 86
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=33.84 E-value=41 Score=23.65 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=18.1
Q ss_pred EEEcCCCcccccCChH-hHHHHHHHHH
Q 040514 21 VIYHSKGHTIPRIDER-GQETMLSFIQ 46 (51)
Q Consensus 21 vi~H~gGH~VP~~~~~-~~~~~~~Fl~ 46 (51)
+....+||.||.-.++ ..+.+.+|+.
T Consensus 431 ~~V~~AGH~vp~d~P~~~~~~i~~fl~ 457 (462)
T PTZ00472 431 VQVYNAGHMVPMDQPAVALTMINRFLR 457 (462)
T ss_pred EEECCCCccChhhHHHHHHHHHHHHHc
Confidence 5557899999996553 3445667764
No 87
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=32.60 E-value=1.2e+02 Score=18.44 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=26.5
Q ss_pred HHHHhhc----CC-CeEEE--cCCCccc--ccCChHhHHHHHHHHHHH
Q 040514 10 MVLLESF----VD-PVVIY--HSKGHTI--PRIDERGQETMLSFIQKF 48 (51)
Q Consensus 10 ~~L~~~F----~~-p~vi~--H~gGH~V--P~~~~~~~~~~~~Fl~~~ 48 (51)
++|++.| ++ |++.- ......| |...+.....|++|+.+.
T Consensus 71 ~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 71 MELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp HHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred HHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 6899999 22 88543 4566777 557777788999999864
No 88
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=32.51 E-value=45 Score=23.76 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=18.7
Q ss_pred hhhhHHHHHhhcCCCeEEEcCCC
Q 040514 5 LKEQGMVLLESFVDPVVIYHSKG 27 (51)
Q Consensus 5 ~~~~s~~L~~~F~~p~vi~H~gG 27 (51)
|.|+..+++.+|.|..++-+|||
T Consensus 352 V~~~vA~aI~~~R~Gkl~I~pGG 374 (403)
T COG1379 352 VDPKVAEAIVAFRNGKLIIKPGG 374 (403)
T ss_pred hhHHHHHHHHHHhcCCEEEEcCC
Confidence 55567788999999998888875
No 89
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=32.45 E-value=74 Score=18.17 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=11.8
Q ss_pred EEEcCCCcccccCCh
Q 040514 21 VIYHSKGHTIPRIDE 35 (51)
Q Consensus 21 vi~H~gGH~VP~~~~ 35 (51)
+-+||.|..-|+.++
T Consensus 66 ~HNHPsG~~~PS~~D 80 (113)
T cd08071 66 AHNHPSGDPTPSRED 80 (113)
T ss_pred EeeCCCCCCCCCHHH
Confidence 445999999998654
No 90
>PRK05463 hypothetical protein; Provisional
Probab=32.17 E-value=46 Score=22.53 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=18.9
Q ss_pred HHHHHhhcCCCeEEEcCCCccccc
Q 040514 9 GMVLLESFVDPVVIYHSKGHTIPR 32 (51)
Q Consensus 9 s~~L~~~F~~p~vi~H~gGH~VP~ 32 (51)
.+..+....-|+.|.|..||++=+
T Consensus 229 PQ~av~~ak~~~~itHaPG~Mlit 252 (262)
T PRK05463 229 PQAVVMAAKPPFAITHAPGHMLIT 252 (262)
T ss_pred hHHHHHhcCCceeeecCCceEEEe
Confidence 355666778899999999998744
No 91
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=32.15 E-value=1.5e+02 Score=19.47 Aligned_cols=46 Identities=11% Similarity=0.139 Sum_probs=25.8
Q ss_pred Ccchhhhh--HHHHHhhcC--CCeEEEcC-CCcccccCC--hHhHHHHHHHHH
Q 040514 1 ENDFLKEQ--GMVLLESFV--DPVVIYHS-KGHTIPRID--ERGQETMLSFIQ 46 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~--~p~vi~H~-gGH~VP~~~--~~~~~~~~~Fl~ 46 (51)
+.|.+++. ++.+.+... +..+..-+ ++|.+.... ++..+.+.+||+
T Consensus 279 ~~D~vv~~~~~~~~~~~~~~~~~~l~~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 279 KGDCVCSYEGTVSFYNKLSISNKELHTLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCCccCHHHHHHHHHhccCCCcEEEEECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 35776663 666766653 33333344 589988753 233445666664
No 92
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.58 E-value=46 Score=21.49 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=11.6
Q ss_pred cCCCcccccCChHhHHHHHH
Q 040514 24 HSKGHTIPRIDERGQETMLS 43 (51)
Q Consensus 24 H~gGH~VP~~~~~~~~~~~~ 43 (51)
=.|||.||.- .-+..|..
T Consensus 119 a~GGH~IpED--~Ir~RY~r 136 (187)
T COG4185 119 AKGGHDIPED--KIRRRYRR 136 (187)
T ss_pred hcCCCCCcHH--HHHHHHHH
Confidence 3699999984 33444444
No 93
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=31.03 E-value=70 Score=21.21 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=20.2
Q ss_pred hcCCCeEEEcCCCcccccCChHhHHHHHHHHH
Q 040514 15 SFVDPVVIYHSKGHTIPRIDERGQETMLSFIQ 46 (51)
Q Consensus 15 ~F~~p~vi~H~gGH~VP~~~~~~~~~~~~Fl~ 46 (51)
.|..|++++.+.|||=|. ..+.+.+|..
T Consensus 219 ~~~ppLii~~e~g~yt~e----~~~i~~~~~~ 246 (248)
T COG4123 219 KVLPPLIIHDEDGEYTEE----VKEIYQGFYL 246 (248)
T ss_pred eecCCEEEECCCCCcCHH----HHHHHhhHhh
Confidence 356799999999996444 4556777654
No 94
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=30.86 E-value=1.4e+02 Score=21.36 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=24.1
Q ss_pred Ccchhhhh--HHHHHhhcCCCe-EEEcCCCcccccC
Q 040514 1 ENDFLKEQ--GMVLLESFVDPV-VIYHSKGHTIPRI 33 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~p~-vi~H~gGH~VP~~ 33 (51)
+.|.++|. ++.+++.+.+.. ++.-..||+.+-.
T Consensus 427 e~D~ivP~~~~~~la~~iP~a~l~vI~~aGH~~~v~ 462 (481)
T PLN03087 427 GDDELIPVECSYAVKAKVPRARVKVIDDKDHITIVV 462 (481)
T ss_pred CCCCCCCHHHHHHHHHhCCCCEEEEeCCCCCcchhh
Confidence 46877763 777999998755 4456789998753
No 95
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=30.32 E-value=1.2e+02 Score=19.48 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=27.1
Q ss_pred HHHHHhhcCCCeEEEcCCCcccccCCh--HhHHHHHHHHHHH
Q 040514 9 GMVLLESFVDPVVIYHSKGHTIPRIDE--RGQETMLSFIQKF 48 (51)
Q Consensus 9 s~~L~~~F~~p~vi~H~gGH~VP~~~~--~~~~~~~~Fl~~~ 48 (51)
.+.|.+.+.+-+++.-+||-.+|..-. ..++.+..|+..+
T Consensus 189 ~~~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~ 230 (293)
T PRK09636 189 LDALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGL 230 (293)
T ss_pred HHHHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHH
Confidence 356888888888888788877765311 2455677777554
No 96
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=29.46 E-value=1.5e+02 Score=20.35 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=30.0
Q ss_pred Ccchhhh--hHHHHHhhcCC--CeEEEcCC-CcccccC--ChHhHHHHHHHHHHH
Q 040514 1 ENDFLKE--QGMVLLESFVD--PVVIYHSK-GHTIPRI--DERGQETMLSFIQKF 48 (51)
Q Consensus 1 e~D~~~~--~s~~L~~~F~~--p~vi~H~g-GH~VP~~--~~~~~~~~~~Fl~~~ 48 (51)
+.|.++| .++.+.+...+ ..+..-+| ||.+... .++..+.+.+||+..
T Consensus 333 ~~D~vvp~~~a~~l~~~~~~~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~ 387 (395)
T PLN02652 333 TADRVTDPLASQDLYNEAASRHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKR 387 (395)
T ss_pred CCCCCCCHHHHHHHHHhcCCCCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHH
Confidence 3687776 37788787643 44444566 6887443 234566688888754
No 97
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=28.90 E-value=24 Score=18.57 Aligned_cols=13 Identities=23% Similarity=-0.000 Sum_probs=9.9
Q ss_pred EEcCCCcccccCC
Q 040514 22 IYHSKGHTIPRID 34 (51)
Q Consensus 22 i~H~gGH~VP~~~ 34 (51)
..=|-||+||+..
T Consensus 21 ~~~pCgH~I~~~~ 33 (55)
T PF14447_consen 21 TVLPCGHLICDNC 33 (55)
T ss_pred ccccccceeeccc
Confidence 3458899999864
No 98
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=28.85 E-value=32 Score=22.35 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=8.3
Q ss_pred EEEcCC-----Cccccc
Q 040514 21 VIYHSK-----GHTIPR 32 (51)
Q Consensus 21 vi~H~g-----GH~VP~ 32 (51)
||.|-| ||||=-
T Consensus 172 Vi~H~G~s~~sGHYva~ 188 (241)
T cd02670 172 AVCHRGTSLETGHYVAF 188 (241)
T ss_pred EEEeCCCCCCCcCeEEE
Confidence 666754 999844
No 99
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=28.80 E-value=70 Score=21.48 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=14.7
Q ss_pred CeEEEcCCCcccccCCh
Q 040514 19 PVVIYHSKGHTIPRIDE 35 (51)
Q Consensus 19 p~vi~H~gGH~VP~~~~ 35 (51)
+++.+|-.+|+.|-.+-
T Consensus 66 ~~l~rhGr~H~y~ph~~ 82 (262)
T COG0005 66 AFLARHGRGHSYPPHSV 82 (262)
T ss_pred EEEecCCCCCCCCCCCc
Confidence 67889999999999764
No 100
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=28.78 E-value=34 Score=19.89 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=8.4
Q ss_pred EEEc-----CCCccccc
Q 040514 21 VIYH-----SKGHTIPR 32 (51)
Q Consensus 21 vi~H-----~gGH~VP~ 32 (51)
||.| .+|||+=-
T Consensus 198 vi~h~G~~~~~GHY~~~ 214 (255)
T cd02257 198 VVVHSGTSADSGHYVAY 214 (255)
T ss_pred EEEEecCCCCCcCeEEE
Confidence 5666 67898744
No 101
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=28.51 E-value=51 Score=19.01 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=16.0
Q ss_pred ccccCChHhHHHHHHHHHHHh
Q 040514 29 TIPRIDERGQETMLSFIQKFQ 49 (51)
Q Consensus 29 ~VP~~~~~~~~~~~~Fl~~~~ 49 (51)
-|+.++ +..++|.+|+++..
T Consensus 55 ~V~~l~-epIDVY~~wiD~~~ 74 (99)
T PRK14892 55 EVPSVY-DEVDVYNKFIDLYL 74 (99)
T ss_pred ECCccc-cchhhHHHHHHHHH
Confidence 367777 58899999999865
No 102
>PF02236 Viral_DNA_bi: Viral DNA-binding protein, all alpha domain; InterPro: IPR003176 This domain represents the N-terminal domain of the viral DNA-binding protein, a multi functional protein involved in DNA replication and transcription control.; GO: 0003677 DNA binding, 0006260 DNA replication, 0006351 transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 1ADU_A 1ADV_B 2WB0_X 2WAZ_X 1ANV_A.
Probab=28.46 E-value=17 Score=20.58 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=26.4
Q ss_pred hHHHHHhhcCCCeEEEcCCCcccccCChHhHHHHHHHHHHH
Q 040514 8 QGMVLLESFVDPVVIYHSKGHTIPRIDERGQETMLSFIQKF 48 (51)
Q Consensus 8 ~s~~L~~~F~~p~vi~H~gGH~VP~~~~~~~~~~~~Fl~~~ 48 (51)
++++++..+-++.=+.+++-.+.|-..+-.+++...|+.+-
T Consensus 8 kaMe~~~~l~e~~kvd~~~~t~lPd~~e~~~Ki~~~~l~~~ 48 (86)
T PF02236_consen 8 KAMELAHKLMEKYKVDWKGFTFLPDQGECFRKICQTWLNEE 48 (86)
T ss_dssp HHHHHHHHHHHHTT--HHH--S-TT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCeECCCcHHHHHHHHHHHHHhc
Confidence 57777777777777888899999998766788888888764
No 103
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=28.38 E-value=19 Score=18.95 Aligned_cols=16 Identities=44% Similarity=0.796 Sum_probs=9.4
Q ss_pred hcCCCeEEEcCCCccccc
Q 040514 15 SFVDPVVIYHSKGHTIPR 32 (51)
Q Consensus 15 ~F~~p~vi~H~gGH~VP~ 32 (51)
.+.||+++ +.||++-+
T Consensus 13 lM~dPVi~--~~G~tyer 28 (73)
T PF04564_consen 13 LMRDPVIL--PSGHTYER 28 (73)
T ss_dssp B-SSEEEE--TTSEEEEH
T ss_pred HhhCceeC--CcCCEEcH
Confidence 45677766 66676655
No 104
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=27.93 E-value=86 Score=21.49 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=27.2
Q ss_pred CcchhhhhH----HHHHhhcCCCe-EEEcCCCcccccCChH------hHHHHHHHHHH
Q 040514 1 ENDFLKEQG----MVLLESFVDPV-VIYHSKGHTIPRIDER------GQETMLSFIQK 47 (51)
Q Consensus 1 e~D~~~~~s----~~L~~~F~~p~-vi~H~gGH~VP~~~~~------~~~~~~~Fl~~ 47 (51)
+.|.++.++ +.|.++=.+-. +.++.|+|....+... .++.+.+|+++
T Consensus 277 g~D~L~D~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~ 334 (336)
T KOG1515|consen 277 GYDVLRDEGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKS 334 (336)
T ss_pred CchhhhhhhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhh
Confidence 457777754 44544333333 4568889988776643 23445566654
No 105
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=27.79 E-value=29 Score=22.62 Aligned_cols=12 Identities=42% Similarity=0.728 Sum_probs=8.7
Q ss_pred EEEcCC-----Cccccc
Q 040514 21 VIYHSK-----GHTIPR 32 (51)
Q Consensus 21 vi~H~g-----GH~VP~ 32 (51)
||.|.| |||+=-
T Consensus 251 vI~H~G~~~~~GHY~~~ 267 (324)
T cd02668 251 VLIHQGVSAYSGHYIAH 267 (324)
T ss_pred EEEEcCCCCCCEeeEEE
Confidence 788854 899853
No 106
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=27.26 E-value=62 Score=21.21 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=16.2
Q ss_pred HHHHHhhcC--CCeEEEcCCCccccc
Q 040514 9 GMVLLESFV--DPVVIYHSKGHTIPR 32 (51)
Q Consensus 9 s~~L~~~F~--~p~vi~H~gGH~VP~ 32 (51)
..+++.... .++||.|-||+.|=.
T Consensus 39 ~~~ia~l~~~g~~~ViVHGggp~i~~ 64 (280)
T cd04237 39 VHDIALLHSLGIRLVLVHGARPQIDQ 64 (280)
T ss_pred HHHHHHHHHCCCcEEEEeCCCHHHHH
Confidence 445555443 378999999987653
No 107
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=26.94 E-value=1.3e+02 Score=19.06 Aligned_cols=44 Identities=9% Similarity=-0.014 Sum_probs=25.4
Q ss_pred cchhhhh---HHHHHhhcC---CC-eEEEcCC-CcccccCChHhHHHHHHHHH
Q 040514 2 NDFLKEQ---GMVLLESFV---DP-VVIYHSK-GHTIPRIDERGQETMLSFIQ 46 (51)
Q Consensus 2 ~D~~~~~---s~~L~~~F~---~p-~vi~H~g-GH~VP~~~~~~~~~~~~Fl~ 46 (51)
.|.+++. +..+.+... .+ .....|| ||...... ...+....|..
T Consensus 221 ~D~~v~~~~~~~~~~~~l~~~g~~v~~~~~~g~~H~f~~~~-~~~~~~~~~~~ 272 (275)
T TIGR02821 221 ADQFLDEQLRPDAFEQACRAAGQALTLRRQAGYDHSYYFIA-SFIADHLRHHA 272 (275)
T ss_pred CCcccCccccHHHHHHHHHHcCCCeEEEEeCCCCccchhHH-HhHHHHHHHHH
Confidence 5666664 344555552 23 3566787 99998875 34444445544
No 108
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=26.85 E-value=27 Score=20.81 Aligned_cols=12 Identities=42% Similarity=0.700 Sum_probs=7.9
Q ss_pred EEEc----CCCccccc
Q 040514 21 VIYH----SKGHTIPR 32 (51)
Q Consensus 21 vi~H----~gGH~VP~ 32 (51)
||.| .+|||+=-
T Consensus 216 vi~H~G~~~~GHY~a~ 231 (269)
T PF00443_consen 216 VIVHYGSADSGHYVAY 231 (269)
T ss_dssp EEEEESSTTSEEEEEE
T ss_pred hhccccccccceEEEe
Confidence 5666 57899743
No 109
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=26.81 E-value=24 Score=22.85 Aligned_cols=16 Identities=44% Similarity=0.698 Sum_probs=10.9
Q ss_pred CeEEEcCCCcccccCC
Q 040514 19 PVVIYHSKGHTIPRID 34 (51)
Q Consensus 19 p~vi~H~gGH~VP~~~ 34 (51)
+.++.--||||.|+..
T Consensus 131 ~~~ig~GG~HYapr~t 146 (213)
T PF04414_consen 131 PVAIGFGGGHYAPRFT 146 (213)
T ss_dssp EEEEEE-S-TT-HHHH
T ss_pred ceeEEecCcccchhhh
Confidence 7789999999999854
No 110
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=26.59 E-value=42 Score=16.40 Aligned_cols=16 Identities=38% Similarity=0.725 Sum_probs=10.9
Q ss_pred hcCCCeEEEcCCCccccc
Q 040514 15 SFVDPVVIYHSKGHTIPR 32 (51)
Q Consensus 15 ~F~~p~vi~H~gGH~VP~ 32 (51)
.+.+|++. +-||.+=+
T Consensus 10 ~~~~Pv~~--~~G~v~~~ 25 (63)
T smart00504 10 VMKDPVIL--PSGQTYER 25 (63)
T ss_pred cCCCCEEC--CCCCEEeH
Confidence 35788765 66888744
No 111
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=26.55 E-value=29 Score=22.81 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=17.6
Q ss_pred HHHHHhhcCCCeEEEc---CCCcccccCC
Q 040514 9 GMVLLESFVDPVVIYH---SKGHTIPRID 34 (51)
Q Consensus 9 s~~L~~~F~~p~vi~H---~gGH~VP~~~ 34 (51)
+++|........-+.| --|||||.+.
T Consensus 19 ~~el~~~~~agad~iH~DVMDghFVPNiT 47 (220)
T COG0036 19 GEELKALEAAGADLIHIDVMDGHFVPNIT 47 (220)
T ss_pred HHHHHHHHHcCCCEEEEeccCCCcCCCcc
Confidence 5666666665555555 4799999964
No 112
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=26.45 E-value=29 Score=22.15 Aligned_cols=9 Identities=22% Similarity=0.696 Sum_probs=7.4
Q ss_pred CCcccccCC
Q 040514 26 KGHTIPRID 34 (51)
Q Consensus 26 gGH~VP~~~ 34 (51)
-|||||.+.
T Consensus 35 DG~Fvpn~t 43 (220)
T PRK08883 35 DNHYVPNLT 43 (220)
T ss_pred cCcccCccc
Confidence 499999964
No 113
>PRK03995 hypothetical protein; Provisional
Probab=26.41 E-value=43 Score=22.36 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=13.7
Q ss_pred CeEEEcCCCcccccCC
Q 040514 19 PVVIYHSKGHTIPRID 34 (51)
Q Consensus 19 p~vi~H~gGH~VP~~~ 34 (51)
+.++--.||||.|+..
T Consensus 182 ~~~iGiGGgHYapr~T 197 (267)
T PRK03995 182 KPAIGIGGGHYAPKFT 197 (267)
T ss_pred CEEEEECCCCccHHHH
Confidence 5788999999999854
No 114
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=26.30 E-value=89 Score=15.01 Aligned_cols=18 Identities=11% Similarity=0.375 Sum_probs=13.5
Q ss_pred ccCChHhHHHHHHHHHHH
Q 040514 31 PRIDERGQETMLSFIQKF 48 (51)
Q Consensus 31 P~~~~~~~~~~~~Fl~~~ 48 (51)
|+.+++.++.-++.|+++
T Consensus 17 PnvSeeaK~~A~~~Le~~ 34 (36)
T PF10346_consen 17 PNVSEEAKQHAREKLEEM 34 (36)
T ss_pred CCcCHHHHHHHHHHHHHc
Confidence 666778888888887764
No 115
>PRK14866 hypothetical protein; Provisional
Probab=26.24 E-value=68 Score=23.15 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=13.9
Q ss_pred CeEEEcCCCcccccCC
Q 040514 19 PVVIYHSKGHTIPRID 34 (51)
Q Consensus 19 p~vi~H~gGH~VP~~~ 34 (51)
+.++--.||||.|+..
T Consensus 186 ~~~iG~GGgHYapr~t 201 (451)
T PRK14866 186 RPLVGFGGGHYAPRQT 201 (451)
T ss_pred CEEEEeCCCCcchhHH
Confidence 6788999999999954
No 116
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=26.16 E-value=30 Score=22.28 Aligned_cols=9 Identities=22% Similarity=0.696 Sum_probs=7.3
Q ss_pred CCcccccCC
Q 040514 26 KGHTIPRID 34 (51)
Q Consensus 26 gGH~VP~~~ 34 (51)
-|||||.+.
T Consensus 39 DG~FVPN~t 47 (223)
T PRK08745 39 DNHYVPNLT 47 (223)
T ss_pred cCccCCCcc
Confidence 499999954
No 117
>PRK13604 luxD acyl transferase; Provisional
Probab=25.47 E-value=1.7e+02 Score=19.90 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=31.5
Q ss_pred cchhhh--hHHHHHhhcC-CC--eEEEcCCCcccccCChHhHHHHHHHHHHHh
Q 040514 2 NDFLKE--QGMVLLESFV-DP--VVIYHSKGHTIPRIDERGQETMLSFIQKFQ 49 (51)
Q Consensus 2 ~D~~~~--~s~~L~~~F~-~p--~vi~H~gGH~VP~~~~~~~~~~~~Fl~~~~ 49 (51)
.|.++| .|++|.+.+. .+ .++.-.++|..--. .-+++.|++.+.
T Consensus 212 ~D~lVp~~~s~~l~e~~~s~~kkl~~i~Ga~H~l~~~----~~~~~~~~~~~~ 260 (307)
T PRK13604 212 NDSWVKQSEVIDLLDSIRSEQCKLYSLIGSSHDLGEN----LVVLRNFYQSVT 260 (307)
T ss_pred CCCccCHHHHHHHHHHhccCCcEEEEeCCCccccCcc----hHHHHHHHHHHH
Confidence 577777 4888999885 23 36778899987553 347888988653
No 118
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.95 E-value=2e+02 Score=18.48 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=15.7
Q ss_pred HHHHHhhcCCCeEEEcCCCcc
Q 040514 9 GMVLLESFVDPVVIYHSKGHT 29 (51)
Q Consensus 9 s~~L~~~F~~p~vi~H~gGH~ 29 (51)
+.++++.+--+.|+.|||-..
T Consensus 93 ~i~~A~~lga~~vv~H~G~~~ 113 (274)
T TIGR00587 93 ELKRCELLGIMLYNFHPGSAL 113 (274)
T ss_pred HHHHHHHcCCCEEEECCCCCC
Confidence 455677776678999998754
No 119
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=24.21 E-value=52 Score=21.10 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=31.6
Q ss_pred cchhhh--hHHHHHhhcCCCeEEEcCCCcccccCC----hHhHHHHHHHHHH
Q 040514 2 NDFLKE--QGMVLLESFVDPVVIYHSKGHTIPRID----ERGQETMLSFIQK 47 (51)
Q Consensus 2 ~D~~~~--~s~~L~~~F~~p~vi~H~gGH~VP~~~----~~~~~~~~~Fl~~ 47 (51)
+|...+ .++.++..+.+-+|..=.|||+-=.+. ++....+.+|+.+
T Consensus 127 nDp~~~~~~a~~~a~~wgs~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 127 NDPYVSYEHAEDLANAWGSALVDVGEGGHINAESGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred CCCCCCHHHHHHHHHhccHhheecccccccchhhcCCCcHHHHHHHHHHhhh
Confidence 566666 488899999999999999999854421 1223345555544
No 120
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=23.90 E-value=65 Score=23.65 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=15.1
Q ss_pred hhcCCCe-EEEcCCCcccccCChH
Q 040514 14 ESFVDPV-VIYHSKGHTIPRIDER 36 (51)
Q Consensus 14 ~~F~~p~-vi~H~gGH~VP~~~~~ 36 (51)
..+.+-+ +-.=++||+||--.++
T Consensus 455 ~s~~n~~~~r~y~aGHMvp~d~P~ 478 (498)
T COG2939 455 KSYRNLTFLRIYEAGHMVPYDRPE 478 (498)
T ss_pred cccCCceEEEEecCcceeecCChH
Confidence 3344333 4558999999997653
No 121
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=23.83 E-value=44 Score=21.39 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=8.2
Q ss_pred EEEcCC-----Cccccc
Q 040514 21 VIYHSK-----GHTIPR 32 (51)
Q Consensus 21 vi~H~g-----GH~VP~ 32 (51)
||.|.| |||+=-
T Consensus 257 vI~H~G~~~~~GHY~~~ 273 (311)
T cd02658 257 FISHKGTSVHSGHYVAH 273 (311)
T ss_pred EEEccCCCCCCcceEEE
Confidence 667776 788743
No 122
>PRK10162 acetyl esterase; Provisional
Probab=23.63 E-value=2.1e+02 Score=18.69 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=26.7
Q ss_pred CcchhhhhHHHHHhhcC----CCeEEEcCCC-cccccCC---h---HhHHHHHHHHHHH
Q 040514 1 ENDFLKEQGMVLLESFV----DPVVIYHSKG-HTIPRID---E---RGQETMLSFIQKF 48 (51)
Q Consensus 1 e~D~~~~~s~~L~~~F~----~p~vi~H~gG-H~VP~~~---~---~~~~~~~~Fl~~~ 48 (51)
+.|.+.+.++.+.+.+. +-.+...+|+ |-..... + +..+.+.+|+.+.
T Consensus 257 ~~D~L~de~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~ 315 (318)
T PRK10162 257 EFDPLLDDSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQ 315 (318)
T ss_pred CCCcCcChHHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHH
Confidence 46777777777777773 2335556665 7554331 1 2334455677654
No 123
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=23.28 E-value=41 Score=21.63 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=8.1
Q ss_pred EEEcCC-----Cccccc
Q 040514 21 VIYHSK-----GHTIPR 32 (51)
Q Consensus 21 vi~H~g-----GH~VP~ 32 (51)
||.|.| |||+=-
T Consensus 242 vi~H~G~~~~~GHY~a~ 258 (300)
T cd02663 242 VVVHIGGGPNHGHYVSI 258 (300)
T ss_pred EEEEecCCCCCCceEEE
Confidence 666754 898743
No 124
>PF14376 Haem_bd: Haem-binding domain
Probab=23.15 E-value=84 Score=18.63 Aligned_cols=25 Identities=16% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEcCCCcccccCChHhHHHHHHHHHHHh
Q 040514 21 VIYHSKGHTIPRIDERGQETMLSFIQKFQ 49 (51)
Q Consensus 21 vi~H~gGH~VP~~~~~~~~~~~~Fl~~~~ 49 (51)
.+.|++. +++++.++.|.+|+++.+
T Consensus 113 ~~~H~~a----~Ls~~ek~~Ll~Wi~~~R 137 (137)
T PF14376_consen 113 TLLHWEA----KLSEEEKQALLNWIKEQR 137 (137)
T ss_pred hhhCCCC----CCCHHHHHHHHHHHHHcC
Confidence 5668876 467788999999998753
No 125
>PRK01060 endonuclease IV; Provisional
Probab=23.08 E-value=2e+02 Score=18.01 Aligned_cols=19 Identities=5% Similarity=0.221 Sum_probs=15.4
Q ss_pred HHHHHhhcCCCeEEEcCCC
Q 040514 9 GMVLLESFVDPVVIYHSKG 27 (51)
Q Consensus 9 s~~L~~~F~~p~vi~H~gG 27 (51)
+.+++..+.-+.|+.|+|+
T Consensus 94 ~i~~A~~lga~~vv~h~G~ 112 (281)
T PRK01060 94 EIERCAALGAKLLVFHPGS 112 (281)
T ss_pred HHHHHHHcCCCEEEEcCCc
Confidence 5667888878899999986
No 126
>cd02425 Peptidase_C39F A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=23.02 E-value=61 Score=17.57 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=11.0
Q ss_pred cCCCeEEEcCCCccc
Q 040514 16 FVDPVVIYHSKGHTI 30 (51)
Q Consensus 16 F~~p~vi~H~gGH~V 30 (51)
-.-|.++....||++
T Consensus 74 ~~lP~I~~~~~~~~~ 88 (126)
T cd02425 74 LKLPVIIFWNNNHFV 88 (126)
T ss_pred CCCCEEEEEcCCcEE
Confidence 355888887778765
No 127
>PF11892 DUF3412: Domain of unknown function (DUF3412); InterPro: IPR021826 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain is found associated with PF03641 from PFAM. ; PDB: 3BQ9_A 2PMB_D 3GH1_D.
Probab=22.94 E-value=28 Score=21.13 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=15.0
Q ss_pred hhhhHHHHHhhcCCCeEEEcCCCcccccC
Q 040514 5 LKEQGMVLLESFVDPVVIYHSKGHTIPRI 33 (51)
Q Consensus 5 ~~~~s~~L~~~F~~p~vi~H~gGH~VP~~ 33 (51)
++.+...|++.|..---+-=||+.|+|.-
T Consensus 91 im~~mD~LL~~FV~Q~RMKLpg~~Y~PCY 119 (123)
T PF11892_consen 91 IMAAMDKLLQSFVKQGRMKLPGSAYEPCY 119 (123)
T ss_dssp HHHHHHHHHHHHHHTT-SS-TTS----SE
T ss_pred HHHHHHHHHHHHHHhCcccCCCCCCcCCe
Confidence 34456779999954444444699999973
No 128
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1. Snurportin-1 (SPN1 or SNUPN) is a nuclear import adaptor for m3G-capped spliceosomal U small nucleoproteins (snRNPs), which are assembled in the cytoplasm. After capping and assembly, the U snRNPs are transported into the nucleus by SPN1 and importin beta; SPN1 is then returned to the cytoplasm by exportin 1 (CRM1), which also transports the non-capped U snRNPs. The U snRNPs are essential elements of the spliceosome, which catalyzes the excision of introns and the ligation of exons to form a mature mRNA. SPN1 contains two domains, an N-terminal importin beta-binding (IBB) domain and a C-terminal m3G cap-binding domain.
Probab=22.34 E-value=69 Score=20.10 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=15.9
Q ss_pred CCCeEEEcCCCcccccCCh
Q 040514 17 VDPVVIYHSKGHTIPRIDE 35 (51)
Q Consensus 17 ~~p~vi~H~gGH~VP~~~~ 35 (51)
.|.++.+|..+||+|-..+
T Consensus 160 ~DGLlFyhk~~~Y~~G~tP 178 (186)
T cd09232 160 LDGLLFYHKESHYTPGSTP 178 (186)
T ss_pred CceEEEEeCCCcccCcCCC
Confidence 3677999999999998764
No 129
>PRK08005 epimerase; Validated
Probab=22.01 E-value=39 Score=21.67 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=14.1
Q ss_pred HHHHHhhcCCCeEEEc---CCCcccccCC
Q 040514 9 GMVLLESFVDPVVIYH---SKGHTIPRID 34 (51)
Q Consensus 9 s~~L~~~F~~p~vi~H---~gGH~VP~~~ 34 (51)
++++.+......=+.| --|||||.+.
T Consensus 16 ~~el~~l~~~g~d~lHiDvMDG~FVPN~t 44 (210)
T PRK08005 16 AEALTALHDAPLGSLHLDIEDTSFINNIT 44 (210)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCcCCccc
Confidence 3444444443332333 3599999964
No 130
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=21.92 E-value=1.2e+02 Score=15.09 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=23.5
Q ss_pred CCCeEEEcCCC-cccccCChHhHHHHHHHHHHHhc
Q 040514 17 VDPVVIYHSKG-HTIPRIDERGQETMLSFIQKFQM 50 (51)
Q Consensus 17 ~~p~vi~H~gG-H~VP~~~~~~~~~~~~Fl~~~~~ 50 (51)
.+...|.+++| -++-..+ ..+...+|++.++.
T Consensus 69 ~~~f~i~~~~~~~~~~~~~--s~~~~~~W~~~i~~ 101 (104)
T PF00169_consen 69 KNCFEITTPNGKSYLFSAE--SEEERKRWIQAIQK 101 (104)
T ss_dssp SSEEEEEETTSEEEEEEES--SHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCcEEEEEcC--CHHHHHHHHHHHHH
Confidence 34567888888 7777754 56678899988864
No 131
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=21.91 E-value=64 Score=21.49 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=13.5
Q ss_pred CCcccccC-ChHhHHHHHHHHH
Q 040514 26 KGHTIPRI-DERGQETMLSFIQ 46 (51)
Q Consensus 26 gGH~VP~~-~~~~~~~~~~Fl~ 46 (51)
||.|||.. ...+.+.+.+|+.
T Consensus 228 G~~yvP~iy~~~q~~~V~~f~~ 249 (272)
T PF09743_consen 228 GASYVPDIYSQAQQEWVDNFFK 249 (272)
T ss_pred CCEEechHHHHHHHHHHHHHHH
Confidence 49999994 2234555666664
No 132
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=21.71 E-value=41 Score=21.84 Aligned_cols=9 Identities=33% Similarity=0.914 Sum_probs=7.2
Q ss_pred CCcccccCC
Q 040514 26 KGHTIPRID 34 (51)
Q Consensus 26 gGH~VP~~~ 34 (51)
-|||||.+.
T Consensus 37 DG~FVPN~t 45 (229)
T PRK09722 37 DGHFVPNLT 45 (229)
T ss_pred cCccCCCcc
Confidence 499999853
No 133
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=21.50 E-value=1.3e+02 Score=20.52 Aligned_cols=50 Identities=16% Similarity=0.054 Sum_probs=33.1
Q ss_pred Ccchhhhh--HHHHHhhcCC--CeEEEcCCC-cccccCChHhHHHHHHHHHHHhc
Q 040514 1 ENDFLKEQ--GMVLLESFVD--PVVIYHSKG-HTIPRIDERGQETMLSFIQKFQM 50 (51)
Q Consensus 1 e~D~~~~~--s~~L~~~F~~--p~vi~H~gG-H~VP~~~~~~~~~~~~Fl~~~~~ 50 (51)
.+|.++|+ ...|.+.|.+ ..+...|+| |-=--..+-.-+++.+||.+...
T Consensus 230 lkDelVPP~~Mr~Ly~~c~S~~Krl~eFP~gtHNDT~i~dGYfq~i~dFlaE~~~ 284 (300)
T KOG4391|consen 230 LKDELVPPVMMRQLYELCPSRTKRLAEFPDGTHNDTWICDGYFQAIEDFLAEVVK 284 (300)
T ss_pred CccccCCcHHHHHHHHhCchhhhhheeCCCCccCceEEeccHHHHHHHHHHHhcc
Confidence 47888884 7889999954 446666665 43333333467789999987643
No 134
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=21.33 E-value=56 Score=21.02 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=8.4
Q ss_pred EEEc----CCCccccc
Q 040514 21 VIYH----SKGHTIPR 32 (51)
Q Consensus 21 vi~H----~gGH~VP~ 32 (51)
||.| .+|||+=-
T Consensus 257 vI~H~G~~~~GHY~~~ 272 (334)
T cd02659 257 VLVHSGDAHGGHYYSY 272 (334)
T ss_pred EEEecCCCCCCCeEEE
Confidence 6667 57999753
No 135
>PTZ00445 p36-lilke protein; Provisional
Probab=21.28 E-value=68 Score=21.11 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=21.5
Q ss_pred cCCCeEEEcCCCcccccCCh-----HhHHHHHHHHHHHh
Q 040514 16 FVDPVVIYHSKGHTIPRIDE-----RGQETMLSFIQKFQ 49 (51)
Q Consensus 16 F~~p~vi~H~gGH~VP~~~~-----~~~~~~~~Fl~~~~ 49 (51)
|+|-+|-.|.||-.-|..+. .....++.|++++.
T Consensus 50 ~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~ 88 (219)
T PTZ00445 50 FDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLK 88 (219)
T ss_pred chhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHH
Confidence 35566677999999997111 12334677877764
No 136
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=21.23 E-value=59 Score=21.80 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=14.8
Q ss_pred HHHhhc-CCCeEEEcCCCccccc
Q 040514 11 VLLESF-VDPVVIYHSKGHTIPR 32 (51)
Q Consensus 11 ~L~~~F-~~p~vi~H~gGH~VP~ 32 (51)
.|+..+ .+| |+.|.||+.|=.
T Consensus 28 ~lL~~~G~~~-VvVHGggp~I~~ 49 (265)
T COG0548 28 ALLKSVGIRP-VVVHGGGPQIDE 49 (265)
T ss_pred HHHHHCCCcE-EEEeCCchHHHH
Confidence 444444 567 999999988744
No 137
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions []. However the relevant mutation has subsequently been shown to be in recG, not radC []. In addition all attempts to characterise a radiation-related function for RadC in Streptococcus pneumoniae failed, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair [].; PDB: 2QLC_A.
Probab=21.21 E-value=1.3e+02 Score=17.33 Aligned_cols=13 Identities=23% Similarity=0.274 Sum_probs=5.7
Q ss_pred EEcCCCcccccCC
Q 040514 22 IYHSKGHTIPRID 34 (51)
Q Consensus 22 i~H~gGH~VP~~~ 34 (51)
-.||.|-.-|+..
T Consensus 72 HNHPsG~~~PS~~ 84 (123)
T PF04002_consen 72 HNHPSGDPEPSDA 84 (123)
T ss_dssp EE-TTS--S--HH
T ss_pred EEcCCCCCCCCHh
Confidence 3499999999854
No 138
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=21.15 E-value=52 Score=21.13 Aligned_cols=12 Identities=50% Similarity=0.636 Sum_probs=8.6
Q ss_pred EEEcCC-----Cccccc
Q 040514 21 VIYHSK-----GHTIPR 32 (51)
Q Consensus 21 vi~H~g-----GH~VP~ 32 (51)
||.|-| |||+=-
T Consensus 189 VV~H~G~~~~~GHY~a~ 205 (245)
T cd02673 189 VICHLGESPYDGHYIAY 205 (245)
T ss_pred EEEECCCCCCCceEEEE
Confidence 777866 698754
No 139
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=20.90 E-value=1.3e+02 Score=17.66 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=20.8
Q ss_pred CCeEEEcCCCcccccCChHhHHHHHHHH
Q 040514 18 DPVVIYHSKGHTIPRIDERGQETMLSFI 45 (51)
Q Consensus 18 ~p~vi~H~gGH~VP~~~~~~~~~~~~Fl 45 (51)
+-+|..|.-|-|+|....+-|+.+-.-+
T Consensus 68 S~lVy~~~t~tY~pynk~wIKekiy~lm 95 (104)
T KOG1766|consen 68 SMLVYNRETGTYIPYNKDWIKEKIYVLM 95 (104)
T ss_pred hhhheecccccccCccHHHHHHHHHHHH
Confidence 3568999999999998866665554443
No 140
>PF08741 YwhD: YwhD family; InterPro: IPR014852 The members of this entry are currently uncharacterised. They are around 170 amino acids in length.
Probab=20.89 E-value=1e+02 Score=19.49 Aligned_cols=16 Identities=13% Similarity=0.569 Sum_probs=13.7
Q ss_pred CChHhHHHHHHHHHHH
Q 040514 33 IDERGQETMLSFIQKF 48 (51)
Q Consensus 33 ~~~~~~~~~~~Fl~~~ 48 (51)
+++++++.|++||.+.
T Consensus 131 md~~sk~~L~~fL~~h 146 (163)
T PF08741_consen 131 MDDESKKILADFLKEH 146 (163)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 6778999999999765
No 141
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=20.52 E-value=42 Score=21.88 Aligned_cols=9 Identities=22% Similarity=0.360 Sum_probs=7.1
Q ss_pred CCcccccCC
Q 040514 26 KGHTIPRID 34 (51)
Q Consensus 26 gGH~VP~~~ 34 (51)
-|||||.+.
T Consensus 48 DG~FVPNit 56 (228)
T PRK08091 48 DGQFSPFFT 56 (228)
T ss_pred CCCcCCccc
Confidence 499999853
No 142
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=20.45 E-value=1e+02 Score=19.63 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=15.9
Q ss_pred EEEcCCCcccc-------------cCChHhHHHHHHHHH
Q 040514 21 VIYHSKGHTIP-------------RIDERGQETMLSFIQ 46 (51)
Q Consensus 21 vi~H~gGH~VP-------------~~~~~~~~~~~~Fl~ 46 (51)
.+.=||||..+ +.++...+.+++|.+
T Consensus 88 alviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~ 126 (217)
T PRK11780 88 ALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQ 126 (217)
T ss_pred EEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHH
Confidence 66679998753 234445555666654
No 143
>PRK06443 chorismate mutase; Validated
Probab=20.42 E-value=49 Score=21.18 Aligned_cols=11 Identities=18% Similarity=0.450 Sum_probs=8.9
Q ss_pred cCCCcccccCC
Q 040514 24 HSKGHTIPRID 34 (51)
Q Consensus 24 H~gGH~VP~~~ 34 (51)
-.|||+||.+.
T Consensus 125 ~~~~~~~~~~~ 135 (177)
T PRK06443 125 KAGGHVVIGLP 135 (177)
T ss_pred hcCCeEecCCC
Confidence 46999999864
No 144
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.38 E-value=1.6e+02 Score=20.51 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=19.5
Q ss_pred CeEEE--cCCCcccccCCh-------------HhHHHHHHHHHHH
Q 040514 19 PVVIY--HSKGHTIPRIDE-------------RGQETMLSFIQKF 48 (51)
Q Consensus 19 p~vi~--H~gGH~VP~~~~-------------~~~~~~~~Fl~~~ 48 (51)
+++.+ +.+||..|.-+. ++-+.+..|+...
T Consensus 263 ~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~ 307 (312)
T COG3509 263 RVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQH 307 (312)
T ss_pred ceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhc
Confidence 44443 999999996322 2455678887653
No 145
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=20.12 E-value=3.3e+02 Score=19.37 Aligned_cols=21 Identities=10% Similarity=0.069 Sum_probs=15.4
Q ss_pred HHHHHhhcCCCeEEEcCCCcc
Q 040514 9 GMVLLESFVDPVVIYHSKGHT 29 (51)
Q Consensus 9 s~~L~~~F~~p~vi~H~gGH~ 29 (51)
..+.++.+--+.|+.|||-|.
T Consensus 223 eL~rA~~LGa~~VV~HPGs~~ 243 (413)
T PTZ00372 223 DLQRCEQLGIKLYNFHPGSTV 243 (413)
T ss_pred HHHHHHHcCCCEEEECCCcCC
Confidence 344566666788999999864
Done!