BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040515
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/259 (73%), Positives = 213/259 (82%), Gaps = 12/259 (4%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNHAAVTACATGAHSIGDA RMIQFGD+DVMVAGGTESSIDALS+AGF +SRAL+TK+N
Sbjct: 170 GPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFN 229
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
+PQEASRPFDC RDGF E EHAK+RGAKIYAE+ GYGMSGDAHHITQP
Sbjct: 230 SSPQEASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQP 289
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DGKGA+LAMTRAL+QSGL +Q+DYVNAHATSTP+GD VEA AI+TVFS+HATSG+LA
Sbjct: 290 PEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLA 349
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
FSSTK VEAIF++L IHHGVAP+TLN+ PDPIF+ FMPLT SK M +
Sbjct: 350 FSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKMLV 409
Query: 229 SAALSNSFGFGGTNASLLF 247
A+SNSFGFGGTNASLLF
Sbjct: 410 RTAMSNSFGFGGTNASLLF 428
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 246 bits (629), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 130/262 (49%), Positives = 168/262 (64%), Gaps = 17/262 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ VTACATGA ++G A RMIQ G++D+++AGGTE++I +++ F RAL+T+ N
Sbjct: 152 GPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTR-N 210
Query: 61 GTPQEASRPFDCGRDGFEL------------EHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P++ASRPF RDGF + EHAKKRGA+IYAE+ G+G S DAHHIT+P
Sbjct: 211 EEPEKASRPFTLSRDGFVMGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEP 270
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
H +GKGA LAM RALK +G+ QV Y+NAH TSTP+GD E AI+ VF DHA L
Sbjct: 271 HPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFGDHAK--RLM 328
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK VEAI V ++HGV P T+NL PDP + +F+P ++ +
Sbjct: 329 VSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPELDLDFVP--EPREAKV 386
Query: 229 SAALSNSFGFGGTNASLLFTKC 250
ALSNSF FGG NA L F +
Sbjct: 387 DYALSNSFAFGGHNAVLAFKRV 408
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 236 bits (603), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 130/261 (49%), Positives = 166/261 (63%), Gaps = 16/261 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNH+ VTAC+TGAH+IGDAAR+I GD+DVM+AGGTES I+ +S+AGF RAL+T N
Sbjct: 165 GPNHSVVTACSTGAHAIGDAARLIALGDADVMLAGGTESPINRISLAGFSACRALSTCRN 224
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+ ASRP+D RDGF ELEHAKKRGA+IYAE+ GYG+SGDA+HIT P
Sbjct: 225 DDPERASRPYDVDRDGFVMGEGAAIVVLEELEHAKKRGARIYAEIIGYGLSGDAYHITAP 284
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GA +M ALK++ + ++DY+NAH TST + D +E A+ V +A S+
Sbjct: 285 SESGEGAQRSMMAALKRAQVNVSELDYINAHGTST-MADVIELAAVERVLGYYAPQVSM- 342
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK EAIF VL I +AP TLNL P + +P ++ I
Sbjct: 343 -SSTKSSIGHLLGAAGAAEAIFCVLAIRDNIAPATLNLENPSIETKIDLVP-HKPRERKI 400
Query: 229 SAALSNSFGFGGTNASLLFTK 249
LSNSFGFGGTNASL+ +
Sbjct: 401 DTVLSNSFGFGGTNASLVMRR 421
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 235 bits (599), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/259 (50%), Positives = 164/259 (63%), Gaps = 18/259 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNHA TAC TGAH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL+T N
Sbjct: 179 GPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST--N 236
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+ A RPF RDGF E EHA +R A+IYAEV GYG+SGDA HIT P
Sbjct: 237 SDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAP 296
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G+GA+ M ALK +G+Q ++ Y+NAHATSTPLGD E AI+ +F DHA +LA
Sbjct: 297 DPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKDHAY--ALA 354
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDM 226
SSTK VEA F L ++ P TLNL +P F+ N++PL A K
Sbjct: 355 VSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYVPLKAQEWKTE 414
Query: 227 PISAALSNSFGFGGTNASL 245
L+NSFGFGGTNA+L
Sbjct: 415 KRFIGLTNSFGFGGTNATL 433
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 234 bits (596), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 131/261 (50%), Positives = 164/261 (62%), Gaps = 16/261 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNH+ VTACATG H+IGDAAR+I FGD+DVMVAGGTES + +S+AGF +AL+T+ N
Sbjct: 169 GPNHSVVTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERN 228
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P ASRP+D RDGF ELEHA RGAKIYAEV GYGMSGDA HIT P
Sbjct: 229 DDPTAASRPYDEDRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAP 288
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GA M ALK++G+ ++DY+NAH TST + DT+E A+ V + A ++
Sbjct: 289 TESGEGAQRCMVAALKRAGIVPDEIDYINAHGTST-MADTIELGAVERVVGEAAA--KIS 345
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK EA+F+ L I +AP TLNL P + +P ++ I
Sbjct: 346 MSSTKSSIGHLLGAAGAAEAVFSTLAIRDNIAPATLNLDNPAAQTRIDLVP-HKPRERKI 404
Query: 229 SAALSNSFGFGGTNASLLFTK 249
ALSNSFGFGGTNASL+ +
Sbjct: 405 DVALSNSFGFGGTNASLVLRR 425
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 231 bits (588), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/259 (50%), Positives = 163/259 (62%), Gaps = 18/259 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNHA TA TGAH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL+T N
Sbjct: 185 GPNHAVSTAXTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST--N 242
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+ A RPF RDGF E EHA +R A+IYAEV GYG+SGDA HIT P
Sbjct: 243 SDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAP 302
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G+GA+ M ALK +G+Q ++ Y+NAHATSTPLGD E AI+ +F DHA +LA
Sbjct: 303 DPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKDHAY--ALA 360
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDM 226
SSTK VEA F L ++ P TLNL +P F+ N++PL A K
Sbjct: 361 VSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYVPLKAQEWKTE 420
Query: 227 PISAALSNSFGFGGTNASL 245
L+NSFGFGGTNA+L
Sbjct: 421 KRFIGLTNSFGFGGTNATL 439
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 214 bits (545), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 119/261 (45%), Positives = 157/261 (60%), Gaps = 15/261 (5%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP VTACA +IGDA RMI+ G++DV++AGG E++ D +S+ GF +RAL+T ++
Sbjct: 184 GPLGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFS 243
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P ASRPFD RDGF L+HA RGA+ AE+ GYG + DA+H+T
Sbjct: 244 EEPVRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAG 303
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG GA+ AM AL+ + QVDYVNAHATSTP+GD E A++TVF A A
Sbjct: 304 PDDGSGAMRAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGP---A 360
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK +EA F++L + GV P TLNL PDP + + A++ +P+
Sbjct: 361 ISSTKSATGHLLGAAGAIEAAFSILALRDGVLPGTLNLEHPDPAADGLDLIGPAARHVPV 420
Query: 229 SAALSNSFGFGGTNASLLFTK 249
ALSN FGFGG NAS+LF +
Sbjct: 421 EIALSNGFGFGGVNASVLFRR 441
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 213 bits (543), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 121/263 (46%), Positives = 157/263 (59%), Gaps = 16/263 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPN+ VTACA G+++IGDA R++Q G + M+ GGTE++I LS AGF +RAL+ + N
Sbjct: 158 GPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFR-N 216
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P ASRPFD RDGF ELE A RGAKIY E+ GY M+ DA+HIT P
Sbjct: 217 DDPLHASRPFDKDRDGFVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAP 276
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG+GA A+ ALK SGL+ V Y+NAH TSTP D E AI+ +HA ++A
Sbjct: 277 VPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHAY--NIA 334
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK +EA+ V+ I P T+NL PDP + +++P S+ + +
Sbjct: 335 VSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLDYVP-GQSRALIV 393
Query: 229 SAALSNSFGFGGTNASLLFTKCQ 251
ALSNSFGFGG N +L F K Q
Sbjct: 394 DVALSNSFGFGGHNVTLAFKKYQ 416
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 211 bits (537), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/261 (47%), Positives = 165/261 (63%), Gaps = 15/261 (5%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ + TAC +G H+IG AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N
Sbjct: 169 GPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-N 227
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
PQ ASRP+D RDGF E EHAKKRGAKIYAE+ G+GMS DA+H+T P
Sbjct: 228 DNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 287
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G GA LAM AL+ +G+++ Q+ YVNAH TSTP GD EA A++T+F + A+ +
Sbjct: 288 PENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS--RVL 345
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK VE+I+++L + P T+NL PD + +F+P A + +
Sbjct: 346 VSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGM 405
Query: 229 SAALSNSFGFGGTNASLLFTK 249
L NSFGFGGTN SL+F K
Sbjct: 406 EYTLCNSFGFGGTNGSLIFKK 426
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 211 bits (536), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 123/261 (47%), Positives = 165/261 (63%), Gaps = 15/261 (5%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ + TAC +G H+IG AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N
Sbjct: 154 GPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-N 212
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
PQ ASRP+D RDGF E EHAKKRGAKIYAE+ G+GMS DA+H+T P
Sbjct: 213 DNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 272
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G GA LAM AL+ +G+++ Q+ YVNAH TSTP GD EA A++T+F + A+ +
Sbjct: 273 PENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS--RVL 330
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK VE+I+++L + P T+NL PD + +F+P A + +
Sbjct: 331 VSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGM 390
Query: 229 SAALSNSFGFGGTNASLLFTK 249
L NSFGFGGTN SL+F K
Sbjct: 391 EYTLCNSFGFGGTNGSLIFKK 411
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 210 bits (534), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 118/261 (45%), Positives = 156/261 (59%), Gaps = 15/261 (5%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP VTA A +IGDA RMI+ G++DV++AGG E++ D +S+ GF +RAL+T ++
Sbjct: 184 GPLGCPVTAXAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFS 243
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P ASRPFD RDGF L+HA RGA+ AE+ GYG + DA+H+T
Sbjct: 244 EEPVRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAG 303
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG GA+ AM AL+ + QVDYVNAHATSTP+GD E A++TVF A A
Sbjct: 304 PDDGSGAMRAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGP---A 360
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK +EA F++L + GV P TLNL PDP + + A++ +P+
Sbjct: 361 ISSTKSATGHLLGAAGAIEAAFSILALRDGVLPGTLNLEHPDPAADGLDLIGPAARHVPV 420
Query: 229 SAALSNSFGFGGTNASLLFTK 249
ALSN FGFGG NAS+LF +
Sbjct: 421 EIALSNGFGFGGVNASVLFRR 441
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/261 (46%), Positives = 164/261 (62%), Gaps = 15/261 (5%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ + TAC +G H+IG AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N
Sbjct: 169 GPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-N 227
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
PQ ASRP+D RDGF E EHAKKRGAKIYAE+ G+GMS DA+H+T P
Sbjct: 228 DNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 287
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G GA LAM AL+ +G+++ Q+ YVNAH TSTP GD EA A++T+F + A+ +
Sbjct: 288 PENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS--RVL 345
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SST VE+I+++L + P T+NL PD + +F+P A + +
Sbjct: 346 VSSTASMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGM 405
Query: 229 SAALSNSFGFGGTNASLLFTK 249
L NSFGFGGTN SL+F K
Sbjct: 406 EYTLCNSFGFGGTNGSLIFKK 426
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 207 bits (526), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 122/261 (46%), Positives = 164/261 (62%), Gaps = 15/261 (5%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ + TA +G H+IG AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N
Sbjct: 169 GPSISIATAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-N 227
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
PQ ASRP+D RDGF E EHAKKRGAKIYAE+ G+GMS DA+H+T P
Sbjct: 228 DNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 287
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G GA LAM AL+ +G+++ Q+ YVNAH TSTP GD EA A++T+F + A+ +
Sbjct: 288 PENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS--RVL 345
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK VE+I+++L + P T+NL PD + +F+P A + +
Sbjct: 346 VSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGM 405
Query: 229 SAALSNSFGFGGTNASLLFTK 249
L NSFGFGGTN SL+F K
Sbjct: 406 EYTLCNSFGFGGTNGSLIFKK 426
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 206 bits (524), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 122/261 (46%), Positives = 164/261 (62%), Gaps = 15/261 (5%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ + TA +G H+IG AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N
Sbjct: 169 GPSISIATAQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-N 227
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
PQ ASRP+D RDGF E EHAKKRGAKIYAE+ G+GMS DA+H+T P
Sbjct: 228 DNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 287
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G GA LAM AL+ +G+++ Q+ YVNAH TSTP GD EA A++T+F + A+ +
Sbjct: 288 PENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS--RVL 345
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK VE+I+++L + P T+NL PD + +F+P A + +
Sbjct: 346 VSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGM 405
Query: 229 SAALSNSFGFGGTNASLLFTK 249
L NSFGFGGTN SL+F K
Sbjct: 406 EYTLCNSFGFGGTNGSLIFKK 426
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 204 bits (520), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 158/263 (60%), Gaps = 17/263 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPN A VTACATG +SIG+A +++Q GD+D M+ GGTE+ I +++AGF SRAL+T N
Sbjct: 179 GPNGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALST--N 236
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
+ A RPF GRDGF LE A+ RGA IYAE+ GYG +GDA+HIT P
Sbjct: 237 DDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAP 296
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G+G AM A+ +G++ V Y+NAH TSTP+GD E AI+ F + A L
Sbjct: 297 APEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAK--HLK 354
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK +EAIF+ L+I T++ PDP + + +P ++D+ I
Sbjct: 355 VSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDIVP-NEAQDLDI 413
Query: 229 SAALSNSFGFGGTNASLLFTKCQ 251
+ A+SNS GFGG NA L+F K +
Sbjct: 414 TYAMSNSLGFGGHNAVLVFKKFE 436
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 200 bits (509), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 119/263 (45%), Positives = 161/263 (61%), Gaps = 17/263 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N VTACAT +SIGDA ++I+ GD+D + GG E+ I S+AGF ++AL+ N
Sbjct: 155 GINSTTVTACATATNSIGDAFKVIERGDADAXITGGAEAPITKXSLAGFTANKALS--LN 212
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+ A RPFD RDGF E EHAK RGAKIYAE+ GYG +GDA+HIT P
Sbjct: 213 PDPETACRPFDKDRDGFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAP 272
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G+GA A A+ +GL +VDY+NAH TSTP D E AI+TVF +HA LA
Sbjct: 273 APNGEGAARAXKXAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAIKTVFGEHAK--KLA 330
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK +EAIFA+LTI + T++L D + + +++P A ++ +
Sbjct: 331 ISSTKSXTGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYVPNEA-REANV 389
Query: 229 SAALSNSFGFGGTNASLLFTKCQ 251
+ +SNSFGFGG NA+L+F + +
Sbjct: 390 NVVISNSFGFGGHNATLVFKRIE 412
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 173 bits (438), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 140/255 (54%), Gaps = 19/255 (7%)
Query: 7 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 66
V+AC++G+ +I A R I GD+DV V GG E I+AL +A F RA++T+ N P+ A
Sbjct: 168 VSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTR-NDEPERA 226
Query: 67 SRPFDCGRDGFEL------------EHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKG 114
SRPFD RDGF EHAK RGAK A + G G++ DA H+ P DG
Sbjct: 227 SRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVR 286
Query: 115 AILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKX 174
A AMTR+L+ +GL +D+VNAH T+TP+GD EA AIR D A A + K
Sbjct: 287 AGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAIRVAGCDQA-----AVYAPKS 341
Query: 175 XXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 234
+E++ VLT+ GV P TLN PDP + + + + A++N
Sbjct: 342 ALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLDVV-AGEPRYGDYRYAVNN 400
Query: 235 SFGFGGTNASLLFTK 249
SFGFGG N +L F +
Sbjct: 401 SFGFGGHNVALAFGR 415
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/255 (40%), Positives = 139/255 (54%), Gaps = 19/255 (7%)
Query: 7 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 66
V+A ++G+ +I A R I GD+DV V GG E I+AL +A F RA++T+ N P+ A
Sbjct: 168 VSAQSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTR-NDEPERA 226
Query: 67 SRPFDCGRDGFEL------------EHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKG 114
SRPFD RDGF EHAK RGAK A + G G++ DA H+ P DG
Sbjct: 227 SRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVR 286
Query: 115 AILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKX 174
A AMTR+L+ +GL +D+VNAH T+TP+GD EA AIR D A A + K
Sbjct: 287 AGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAIRVAGCDQA-----AVYAPKS 341
Query: 175 XXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 234
+E++ VLT+ GV P TLN PDP + + + + A++N
Sbjct: 342 ALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLDVV-AGEPRYGDYRYAVNN 400
Query: 235 SFGFGGTNASLLFTK 249
SFGFGG N +L F +
Sbjct: 401 SFGFGGHNVALAFGR 415
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 167 bits (422), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/263 (39%), Positives = 145/263 (55%), Gaps = 23/263 (8%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N++ +ACAT AH IG+A IQ G D++ AGG E ++ F AL+TKYN
Sbjct: 154 GVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYN 212
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
TP++ASR +D RDGF ELEHA RGA IYAE+ GYG + D + P
Sbjct: 213 DTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP 272
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GA+ M A+ G+ + +DY+N+H TSTP+GD E AIR VF D S A
Sbjct: 273 --SGEGAVRCMKMAMH--GVDT-PIDYLNSHGTSTPVGDVKELAAIREVFGDK----SPA 323
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
S+TK EAI+++L + HG ++N+ + D +T + D +
Sbjct: 324 ISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDE-QAAGLNIVTETTDREL 382
Query: 229 SAALSNSFGFGGTNASLLFTKCQ 251
+ +SNSFGFGGTNA+L+ K +
Sbjct: 383 TTVMSNSFGFGGTNATLVMRKLK 405
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 167 bits (422), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/263 (39%), Positives = 145/263 (55%), Gaps = 23/263 (8%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N++ +ACAT AH IG+A IQ G D++ AGG E ++ F AL+TKYN
Sbjct: 154 GVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYN 212
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
TP++ASR +D RDGF ELEHA RGA IYAE+ GYG + D + P
Sbjct: 213 DTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP 272
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GA+ M A+ G+ + +DY+N+H TSTP+GD E AIR VF D S A
Sbjct: 273 --SGEGAVRCMKMAMH--GVDT-PIDYLNSHGTSTPVGDVKELAAIREVFGDK----SPA 323
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
S+TK EAI+++L + HG ++N+ + D +T + D +
Sbjct: 324 ISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDE-QAAGLNIVTETTDREL 382
Query: 229 SAALSNSFGFGGTNASLLFTKCQ 251
+ +SNSFGFGGTNA+L+ K +
Sbjct: 383 TTVMSNSFGFGGTNATLVMRKLK 405
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 145/263 (55%), Gaps = 23/263 (8%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N++ +ACAT AH IG+A IQ G D++ AGG E ++ F AL+TKYN
Sbjct: 154 GVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYN 212
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
TP++ASR +D RDGF ELEHA RGA IYAE+ GYG + D + P
Sbjct: 213 DTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP 272
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GA+ M A+ G+ + +DY+N+H TSTP+GD E AIR VF D S A
Sbjct: 273 --SGEGAVRCMKMAMH--GVDT-PIDYLNSHGTSTPVGDVKELAAIREVFGDK----SPA 323
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
S+T+ EAI+++L + HG ++N+ + D +T + D +
Sbjct: 324 ISATRAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDE-QAAGLNIVTETTDREL 382
Query: 229 SAALSNSFGFGGTNASLLFTKCQ 251
+ +SNSFGFGGTNA+L+ K +
Sbjct: 383 TTVMSNSFGFGGTNATLVMRKLK 405
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 139/256 (54%), Gaps = 20/256 (7%)
Query: 8 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 67
TAC++ +IGDA R I+FG DVM+ GGTE+SI ++AGF AL+T + P AS
Sbjct: 181 TACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTED--PTRAS 238
Query: 68 RPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 115
PFD R+GF LEHA+KRGA I AEV GYG + DA+H+T PH +G+GA
Sbjct: 239 IPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGA 298
Query: 116 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXX 175
I A+ AL+++ + QV YVNAH TSTP + E+ AI V + SSTK
Sbjct: 299 IKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVLGKE-----VPVSSTKSF 353
Query: 176 XXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 235
VEAI + + H P+T ++ N + + I A+SN+
Sbjct: 354 TGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVV-YGQGLEKEIPYAISNT 412
Query: 236 FGFGGTNASLLFTKCQ 251
FGFGG NA L F + +
Sbjct: 413 FGFGGHNAVLAFKRWE 428
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 144/263 (54%), Gaps = 23/263 (8%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N++ +ACAT AH IG+A IQ G D++ AGG E ++ F AL+TKYN
Sbjct: 166 GVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYN 224
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
TP++ASR +D RDGF ELEHA RGA IYAE+ GYG + D + P
Sbjct: 225 DTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP 284
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GA+ M A+ G+ + +DY+N+H TSTP+GD E AIR VF D S A
Sbjct: 285 --SGEGAVRCMKMAMH--GVDT-PIDYLNSHGTSTPVGDVKELAAIREVFGDK----SPA 335
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
S+T EAI+++L + HG ++N+ + D +T + D +
Sbjct: 336 ISATAAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDE-QAAGLNIVTETTDREL 394
Query: 229 SAALSNSFGFGGTNASLLFTKCQ 251
+ +SNSFGFGGTNA+L+ K +
Sbjct: 395 TTVMSNSFGFGGTNATLVMRKLK 417
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 164 bits (415), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 144/263 (54%), Gaps = 23/263 (8%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N++ +ACAT AH IG+A IQ G D++ AGG E ++ F AL+TKYN
Sbjct: 166 GVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYN 224
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
TP++ASR +D RDGF ELEHA RGA IYAE+ GYG + D + P
Sbjct: 225 DTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP 284
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GA+ M A+ G+ + +DY+N+ TSTP+GD E AIR VF D S A
Sbjct: 285 --SGEGAVRCMKMAMH--GVDT-PIDYLNSQGTSTPVGDVKELAAIREVFGDK----SPA 335
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
S+TK EAI+++L + HG ++N+ + D +T + D +
Sbjct: 336 ISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDE-QAAGLNIVTETTDREL 394
Query: 229 SAALSNSFGFGGTNASLLFTKCQ 251
+ +SNSFGFGGTNA+L+ K +
Sbjct: 395 TTVMSNSFGFGGTNATLVMRKLK 417
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 164 bits (415), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 144/263 (54%), Gaps = 23/263 (8%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N++ +ACAT AH IG+A IQ G D++ AGG E ++ F AL+TKYN
Sbjct: 166 GVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYN 224
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
TP++ASR +D RDGF ELEHA RGA IYAE+ GYG + D + P
Sbjct: 225 DTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP 284
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GA+ M A+ G+ + +DY+N+ TSTP+GD E AIR VF D S A
Sbjct: 285 --SGEGAVRCMKMAMH--GVDT-PIDYLNSEGTSTPVGDVKELAAIREVFGDK----SPA 335
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
S+TK EAI+++L + HG ++N+ + D +T + D +
Sbjct: 336 ISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDE-QAAGLNIVTETTDREL 394
Query: 229 SAALSNSFGFGGTNASLLFTKCQ 251
+ +SNSFGFGGTNA+L+ K +
Sbjct: 395 TTVMSNSFGFGGTNATLVMRKLK 417
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 142/256 (55%), Gaps = 22/256 (8%)
Query: 8 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 67
TAC++ +IGDA R I+FG DVM+ GGTE+SI ++AGF AL+T + P AS
Sbjct: 181 TACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTED--PTRAS 238
Query: 68 RPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 115
PFD R+GF LEHA+KRGA I AEV GYG + DA+H+T PH +G+GA
Sbjct: 239 IPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGA 298
Query: 116 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXX 175
I A+ AL+++ + QV YVNAH TSTP + E+ AI V ++ SSTK
Sbjct: 299 IKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVLGK-----AVPVSSTKSF 353
Query: 176 XXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTA-SKDMPISAALSN 234
VEAI + + H P+T ++ N + +K++P A+SN
Sbjct: 354 TGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVYGQGLAKEIPY--AISN 411
Query: 235 SFGFGGTNASLLFTKC 250
+FGFGG NA L F +
Sbjct: 412 TFGFGGHNAVLAFKRW 427
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 144/265 (54%), Gaps = 24/265 (9%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N++ +ACAT H IG+A MIQ+G D M AGG E LS+ F A+++KYN
Sbjct: 156 GINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCEDLDWTLSVL-FDAMGAMSSKYN 214
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
TP ASR +D RDGF +LE A RGAKIY E+ GYG + D + + P
Sbjct: 215 DTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP 274
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GAI M AL + ++DY+N HATSTP GD E AIR +F +A
Sbjct: 275 S--GEGAIRCMKMALSTV---TSKIDYINPHATSTPAGDAPEIEAIRQIFGAGDVCPPIA 329
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASK--DM 226
+TK EAI+++L + + + ++ + DP F D MP+ + ++
Sbjct: 330 --ATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIEELDPAFAD--MPIVRKRIDNV 385
Query: 227 PISAALSNSFGFGGTNASLLFTKCQ 251
++ LSNSFGFGGTNA+L+F + Q
Sbjct: 386 QLNTVLSNSFGFGGTNATLVFQRYQ 410
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 144/265 (54%), Gaps = 24/265 (9%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N++ +ACAT H IG+A MIQ+G D M AGG E LS+ F A+++KYN
Sbjct: 173 GINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCEDLDWTLSVL-FDAMGAMSSKYN 231
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
TP ASR +D RDGF +LE A RGAKIY E+ GYG + D + + P
Sbjct: 232 DTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP 291
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GAI M AL + ++DY+N HATSTP GD E AIR +F +A
Sbjct: 292 --SGEGAIRCMKMALSTV---TSKIDYINPHATSTPAGDAPEIEAIRQIFGAGDVCPPIA 346
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASK--DM 226
+TK EAI+++L + + + ++ + DP F D MP+ + ++
Sbjct: 347 --ATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIEELDPAFAD--MPIVRKRIDNV 402
Query: 227 PISAALSNSFGFGGTNASLLFTKCQ 251
++ LSNSFGFGGTNA+L+F + Q
Sbjct: 403 QLNTVLSNSFGFGGTNATLVFQRYQ 427
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/257 (40%), Positives = 140/257 (54%), Gaps = 22/257 (8%)
Query: 8 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 67
TAC++ +IGDA R I+FG DVM+ GGTE+SI ++AGF AL+T + P AS
Sbjct: 182 TACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTED--PTRAS 239
Query: 68 RPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 115
PFD R+GF LEHA+KRGA I AEV GYG + DA+H+T PH +G+GA
Sbjct: 240 IPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGA 299
Query: 116 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXX 175
I A+ AL+++ + QV YVNA TSTP + E+ AI V + SSTK
Sbjct: 300 IKAIKLALEEAEISPEQVAYVNAAGTSTPANEKGESGAIVAVLGKE-----VPVSSTKSF 354
Query: 176 XXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTA-SKDMPISAALSN 234
VEAI + + H P+T ++ N + K++P A+SN
Sbjct: 355 TGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVYAQGLEKEIPY--AISN 412
Query: 235 SFGFGGTNASLLFTKCQ 251
+FGFGG NA L F + +
Sbjct: 413 TFGFGGHNAVLAFKRWE 429
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 144/263 (54%), Gaps = 23/263 (8%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N++ +A AT AH IG+A IQ G D++ AGG E ++ F AL+TKYN
Sbjct: 154 GVNYSISSASATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYN 212
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
TP++ASR +D RDGF ELEHA RGA IYAE+ GYG + D + P
Sbjct: 213 DTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP 272
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GA+ M A+ G+ + +DY+N+H TSTP+GD E AIR VF D S A
Sbjct: 273 --SGEGAVRCMKMAMH--GVDT-PIDYLNSHGTSTPVGDVKELAAIREVFGDK----SPA 323
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
S+TK EAI+++L + HG ++N+ + D +T + D +
Sbjct: 324 ISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDE-QAAGLNIVTETTDREL 382
Query: 229 SAALSNSFGFGGTNASLLFTKCQ 251
+ +SNSFGFGGTNA+L+ K +
Sbjct: 383 TTVMSNSFGFGGTNATLVMRKLK 405
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 144/263 (54%), Gaps = 23/263 (8%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N++ +A AT AH IG+A IQ G D++ AGG E ++ F AL+TKYN
Sbjct: 166 GVNYSISSASATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYN 224
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
TP++ASR +D RDGF ELEHA RGA IYAE+ GYG + D + P
Sbjct: 225 DTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP 284
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GA+ M A+ G+ + +DY+N+H TSTP+GD E AIR VF D S A
Sbjct: 285 --SGEGAVRCMKMAMH--GVDT-PIDYLNSHGTSTPVGDVKELAAIREVFGDK----SPA 335
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
S+TK EAI+++L + HG ++N+ + D +T + D +
Sbjct: 336 ISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDE-QAAGLNIVTETTDREL 394
Query: 229 SAALSNSFGFGGTNASLLFTKCQ 251
+ +SNSFGFGGTNA+L+ K +
Sbjct: 395 TTVMSNSFGFGGTNATLVMRKLK 417
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 144/263 (54%), Gaps = 23/263 (8%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N++ +A AT AH IG+A IQ G D++ AGG E ++ F AL+TKYN
Sbjct: 154 GVNYSISSAXATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYN 212
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
TP++ASR +D RDGF ELEHA RGA IYAE+ GYG + D + P
Sbjct: 213 DTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP 272
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GA+ M A+ G+ + +DY+N+H TSTP+GD E AIR VF D S A
Sbjct: 273 --SGEGAVRCMKMAMH--GVDT-PIDYLNSHGTSTPVGDVKELAAIREVFGDK----SPA 323
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
S+TK EAI+++L + HG ++N+ + D +T + D +
Sbjct: 324 ISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDE-QAAGLNIVTETTDREL 382
Query: 229 SAALSNSFGFGGTNASLLFTKCQ 251
+ +SNSFGFGGTNA+L+ K +
Sbjct: 383 TTVMSNSFGFGGTNATLVMRKLK 405
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 154 bits (390), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 140/266 (52%), Gaps = 29/266 (10%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCK---SRALTT 57
G N++ +ACAT AH IG A +IQ G D++ AGG E L C+ AL+T
Sbjct: 158 GVNYSISSACATSAHCIGHALELIQLGKQDIVFAGGGEE----LCWEXACEFDAXGALST 213
Query: 58 KYNGTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHI 105
KYN TP +ASR +D RDGF ELEHA RGA IYAE+ GYG + D
Sbjct: 214 KYNDTPAKASRTYDQDRDGFVIAGGGGXVVVEELEHALARGAHIYAEIVGYGATSDGADX 273
Query: 106 TQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSG 165
P G+GA+ A +G+ + +DY N H TSTP+GD E AIR VF ++
Sbjct: 274 VAP--SGEGAVRCXQXA--XAGVDT-PIDYXNVHGTSTPVGDVKELGAIREVFGNN---- 324
Query: 166 SLAFSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKD 225
+ A SSTK EAIF++L + HG ++N+ D + +T +
Sbjct: 325 TPAISSTKAXTGHSLGAAGVHEAIFSLLXVEHGFIAPSINIDNLDEQAQGXNI-ITETTQ 383
Query: 226 MPISAALSNSFGFGGTNASLLFTKCQ 251
++ SNSFGFGGTNA+L+ K Q
Sbjct: 384 RELTTVXSNSFGFGGTNATLVXRKYQ 409
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 132/257 (51%), Gaps = 21/257 (8%)
Query: 7 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 66
V+ACA+GA +I A + I G++D + GG E+ I+A+ +AGF + R + + N P A
Sbjct: 184 VSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGA 243
Query: 67 SRPFDCGRDGFEL------------EHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKG 114
RPFD RDGF EHAK RGA I A + G ++ D H+ P +G+
Sbjct: 244 CRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGER 303
Query: 115 AILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKX 174
A A+TRA++ +GL +D+VNAHAT T +GD E AI + A + K
Sbjct: 304 AGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGNRP----AVYAPKS 359
Query: 175 XXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMP--ISAAL 232
VE+I VL + V P TLNL DP + + + A + P A+
Sbjct: 360 ALGHSVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEID---LDVVAGEPRPGNYRYAI 416
Query: 233 SNSFGFGGTNASLLFTK 249
+NSFGFGG N ++ F +
Sbjct: 417 NNSFGFGGHNVAIAFGR 433
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 134 bits (336), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 130/263 (49%), Gaps = 16/263 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP T C +G S+G+A R I+ G +DVM AG ++ I + +A F RA TT N
Sbjct: 160 GPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRA-TTARN 218
Query: 61 GTPQEASRPFDCGRDGFEL------------EHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+ ASRPFD RDGF L + A RGA+I+AE+ GY +A+H+T
Sbjct: 219 DDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGL 278
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG+ + AL +S + +DY+NAH + T D E A + +HA +
Sbjct: 279 KADGREMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTPV- 337
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SS K +E VL + HGV P T NL DP + +++PL A ++ +
Sbjct: 338 -SSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLDYVPLEA-RERKL 395
Query: 229 SAALSNSFGFGGTNASLLFTKCQ 251
+ L+ GFGG ++++ +
Sbjct: 396 RSVLTVGSGFGGFQSAMVLRDAE 418
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 121/256 (47%), Gaps = 21/256 (8%)
Query: 8 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 67
+ACA+G+ +IG A I G +M+AGG E + ++A F A +T+ N P
Sbjct: 166 SACASGSQAIGYAYENIAMGKQTLMLAGGAEE-LSGPAVAVFDTLYATSTR-NDEPHLTP 223
Query: 68 RPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 115
RPFD RDG E EHAK RGA I+AE+ G+G + D H+TQP
Sbjct: 224 RPFDAKRDGLVVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQP--TASTM 281
Query: 116 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXX 175
AM AL+ + L ++ + YVNAH TST GD E+ A F + + SS K
Sbjct: 282 ARAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQATARTFGER-----MPISSLKSY 336
Query: 176 XXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 235
+EA + + + TLNL + DP ++ + +SN+
Sbjct: 337 VGHTLGACGALEAWWTIEMMKRNWYAPTLNLTEVDPACAPLDYIRGEARAIDAEYVMSNN 396
Query: 236 FGFGGTNASLLFTKCQ 251
F FGG N SL+F + +
Sbjct: 397 FAFGGINTSLIFRRVR 412
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 69.7 bits (169), Expect = 2e-12, Method: Composition-based stats.
Identities = 68/266 (25%), Positives = 107/266 (40%), Gaps = 26/266 (9%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ + TAC++ ++ A ++ G+S + V GG F + RAL
Sbjct: 168 GPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALAA--- 224
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
S+ F G DGF L A++ G ++ A VRG ++ D
Sbjct: 225 ---DGRSKAFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVVRGSALNQDGASNGLS 281
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFS-DHATSGSL 167
G + +AL+ GL+ VD V AH T T LGD +EA A+ + D L
Sbjct: 282 APSGPAQRRVIRQALESCGLEPGDVDAVEAHGTGTALGDPIEANALLDTYGRDRDADRPL 341
Query: 168 AFSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDP--IFNDNFMPLTAS-- 223
S K + VL + +G P TL++ +P P ++ + L A
Sbjct: 342 WLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATLHVEEPTPHVDWSSGGVALLAGNQ 401
Query: 224 ---KDMPISAALSNSFGFGGTNASLL 246
+ A ++FG GTNA ++
Sbjct: 402 PWRRGERTRRAAVSAFGISGTNAHVI 427
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 67.8 bits (164), Expect = 5e-12, Method: Composition-based stats.
Identities = 67/269 (24%), Positives = 110/269 (40%), Gaps = 32/269 (11%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP TAC++G ++ A ++ + + +AGG + F L
Sbjct: 190 GPAXTVDTACSSGLTALHLAXESLRRDECGLALAGGVTVXSSPGAFTEFRSQGGLAA--- 246
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGD--AHHIT 106
+PF DGF L A++ G + A +RG ++ D ++ +T
Sbjct: 247 ---DGRCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLT 303
Query: 107 QPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVF-SDHATSG 165
P G + RAL+ +G+++ VDYV AH T T LGD +E A+ + + ++
Sbjct: 304 AP--SGPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVHALLSTYGAERDPDD 361
Query: 166 SLAFSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTA--- 222
L S K AVL + HG P TL+ +P P + ++
Sbjct: 362 PLWIGSVKSNIGHTQAAAGVAGVXKAVLALRHGEXPRTLHFDEPSPQIEWDLGAVSVVSQ 421
Query: 223 -----SKDMPISAALSNSFGFGGTNASLL 246
+ + P A +S SFG GTNA ++
Sbjct: 422 ARSWPAGERPRRAGVS-SFGISGTNAHVI 449
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 52.4 bits (124), Expect = 3e-07, Method: Composition-based stats.
Identities = 64/263 (24%), Positives = 101/263 (38%), Gaps = 26/263 (9%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ TAC++ ++ A + I+ G+ V GG + S F K L+ +
Sbjct: 152 GPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQ--D 209
Query: 61 GTPQEASRPFDCGRDGFELEHA--------KKRGAKIYAEVRGYGMSGDAHH---ITQPH 109
GT R FD G+ A K ++YA + G + D +T P
Sbjct: 210 GT----CRSFDAEGTGYCRAEAVVAVLLTKKSLARRVYATILNAGTNTDGSKEQGVTFPS 265
Query: 110 IDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF 169
D + ++ A +G ++Y+ AH T T +GD E I L
Sbjct: 266 GDVQEQLIRSLYA--PAGPDPESLEYIEAHGTGTKVGDPQELNGIVNALC-ATRREPLLI 322
Query: 170 SSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPD---PIFNDNFMPLTASKDM 226
STK I +L++ HGV L+ P+ P D + + + +
Sbjct: 323 GSTKSNMGHPEPASGVAALIKVLLSLEHGVWAPNLHYHTPNPEIPALQDGRLQVV-DRPL 381
Query: 227 PISAALS--NSFGFGGTNASLLF 247
PI NSFGFGG+N ++
Sbjct: 382 PIRGGNVGINSFGFGGSNVHVIL 404
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 99/263 (37%), Gaps = 26/263 (9%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ A TAC++ ++ +A + I G + GG + + F + L+
Sbjct: 154 GPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLS---- 209
Query: 61 GTPQEASRPFDCGRDGF--------ELEHAKKRGAKIYAEVRGYGMSGDAHH---ITQPH 109
P+ + FD +G+ L K ++YA + G + D +T P
Sbjct: 210 --PEGTCKAFDTAGNGYCRSEGVVAVLLTKKSLARRVYATILNAGTNTDGFKEQGVTFPS 267
Query: 110 IDGKGAILAMTRALKQS-GLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
D + ++ R+L QS G+ +Y+ AH T T +GD E I L
Sbjct: 268 GDIQEQLI---RSLYQSAGVAPESFEYIEAHGTGTKVGDPQELNGITRALC-ATRQEPLL 323
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
STK +L++ HG+ L+ P+P D P+
Sbjct: 324 IGSTKSNMGHPEPASGLAALAKVLLSLEHGLWAPNLHFHSPNPEIPALLDGRLQVVDQPL 383
Query: 229 SA----ALSNSFGFGGTNASLLF 247
NSFGFGG+N ++
Sbjct: 384 PVRGGNVGINSFGFGGSNVHIIL 406
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 40.4 bits (93), Expect = 9e-04, Method: Composition-based stats.
Identities = 69/268 (25%), Positives = 104/268 (38%), Gaps = 39/268 (14%)
Query: 7 VTACATGAHSIGDAARMIQFGDSDVMVAGG-----TESSIDALSMAGFCKSRALTTKYNG 61
V ACAT A S+ + I+ G +D+++AGG E+ I MA + + K
Sbjct: 2737 VGACATAAVSVEEGVDKIKLGKADLVIAGGFDDLTLEAIIGFGDMAATADTEMMRAK-GI 2795
Query: 62 TPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMS-GDAHHITQP 108
+ + SR D R GF + A K G + A V GY S D H + P
Sbjct: 2796 SDSKFSRANDRRRLGFLEAQGGGTILLARGDLALKMGLPVLAVV-GYAQSFADGVHTSIP 2854
Query: 109 HIDGKGAILA--------MTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSD 160
G GA+ A + R+L Q G+ + + ++ H TST D E T + +D
Sbjct: 2855 -APGLGALGAARGGRESTLARSLAQLGVGADDIAVISKHDTSTLANDPNE-TELHERIAD 2912
Query: 161 ---HATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAP--LTLNLAKPDPIFND 215
A L S K + + + GV P +L+ + +
Sbjct: 2913 SMGRAPGNPLFIVSQKTLTGHAKGGAAVFQMMGLCQILRDGVIPPNRSLDCVDDELATSG 2972
Query: 216 NFM----PLTASKDMPISAALSNSFGFG 239
+F+ PL P+ A L S GFG
Sbjct: 2973 HFVWVREPLDLRGKFPLKAGLVTSLGFG 3000
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTES 39
P++ C +G S+ AA+ I G++DV++AGGTE+
Sbjct: 83 PSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTEN 120
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 80 EHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAH 139
+ A + G + A+++ Y +G +P + G G I A +ALK++GL + +D + A+
Sbjct: 266 QKADELGIRPLAKIKSYASAG-----VEPEVMGTGPIPATRKALKKAGLSINDIDLIEAN 320
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 34.3 bits (77), Expect = 0.075, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA-GFCKSRALTT-- 57
GP V ACAT S+ I G + + + GG + + S G K+ + T
Sbjct: 1296 GPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEEGSFEFGNMKATSNTLEE 1355
Query: 58 -KYNGTPQEASRPFDCGRDGF 77
++ TP E SRP R+GF
Sbjct: 1356 FEHGRTPAEMSRPATTTRNGF 1376
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 34.3 bits (77), Expect = 0.075, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA-GFCKSRALTT-- 57
GP V ACAT S+ I G + + + GG + + S G K+ + T
Sbjct: 1097 GPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEEGSFEFGNMKATSNTLEE 1156
Query: 58 -KYNGTPQEASRPFDCGRDGF 77
++ TP E SRP R+GF
Sbjct: 1157 FEHGRTPAEMSRPATTTRNGF 1177
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 33.9 bits (76), Expect = 0.079, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA-GFCKSRALTT-- 57
GP V ACAT S+ I G + + + GG + + S G K+ + T
Sbjct: 1296 GPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEEGSFEFGNMKATSNTLEE 1355
Query: 58 -KYNGTPQEASRPFDCGRDGF 77
++ TP E SRP R+GF
Sbjct: 1356 FEHGRTPAEMSRPATTTRNGF 1376
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
C +G S+ A+++I GD+D+M+ GG E+
Sbjct: 93 CGSGLRSVSMASQLIALGDADIMLVGGAEN 122
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 65
CA+G +I A++ + G DVMVAGG ES +S + +R +T Y G E
Sbjct: 94 CASGMKAIMMASQSLMCGHQDVMVAGGMES----MSNVPYVMNRG-STPYGGVKLE 144
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 31.2 bits (69), Expect = 0.57, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGG-----TESSIDALSMAGFCKSRAL 55
GP V ACAT S+ I G + V + GG E S + +M ++
Sbjct: 1271 GPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFDDFQEEGSYEFANMGATSNAKEE 1330
Query: 56 TTKYNGTPQEASRPFDCGRDGF 77
+ P E SRP R+GF
Sbjct: 1331 FAR-GREPGEMSRPTSTTRNGF 1351
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 80 EHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVN 137
+ AK G + A +R ++G P I G G + A +ALK++GL +D++
Sbjct: 257 QRAKDLGLEPLAVIRSMAVAG-----VDPAIMGYGPVPATQKALKRAGLNMADIDFIE 309
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 11 ATGAHSIGDAARMIQFGDSDVMVAGGTES 39
++G +I AA IQ G S+V+VAGG E+
Sbjct: 92 SSGMQAIMSAAMQIQLGVSEVVVAGGVEA 120
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
CA+G ++ AA+ ++ G D+++AGG ES
Sbjct: 96 CASGLEAVNTAAQKVRSGWDDLVLAGGVES 125
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 50
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 50
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 50
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 50
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 50
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 50
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 50
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 50
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 50
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 86 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 122
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 50
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTE 38
C + ++ DAAR I GD+ V + GG E
Sbjct: 91 CGSSXQALHDAARXIXTGDAQVCLVGGVE 119
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 81 HAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVD 134
A++ G K A +R + G P I G G + A ALK++GL + +D
Sbjct: 255 RARELGLKPRARIRSXAVVG-----CDPSIXGYGPVPASKLALKKAGLSASDID 303
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 11 ATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 65
A+G +I A++ + G DVMVAGG ES +S + +R +T Y G E
Sbjct: 95 ASGMKAIMMASQSLMCGHQDVMVAGGMES----MSNVPYVMNRG-STPYGGVKLE 144
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 11 ATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 65
A+G +I A++ + G DVMVAGG ES +S + +R +T Y G E
Sbjct: 106 ASGMKAIMMASQSLMCGHQDVMVAGGMES----MSNVPYVMNRG-STPYGGVKLE 155
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
C +G ++ AAR I G+ V + G ES
Sbjct: 89 CGSGLEAVAQAARAIWAGEGKVYIGSGVES 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,095,784
Number of Sequences: 62578
Number of extensions: 259731
Number of successful extensions: 713
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 79
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)