BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040518
         (81 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
          Transcription Factor From Antirrhinum Majus
          Length = 93

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 7  KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEFGF 66
          + WS +ENKAFE  +A+Y K+  D  W  +   V  +T +E+K H++ L+ED++ IE G 
Sbjct: 9  RPWSAKENKAFERALAVYDKDTPDR-WANVARAVEGRTPEEVKKHYEILVEDIKYIESGK 67

Query: 67 EP 68
           P
Sbjct: 68 VP 69


>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
          Protein
          Length = 72

 Score = 30.0 bits (66), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 8  QWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58
          +W+ EE + FE G+A +        W KI  L+ ++T+ ++K + ++  ++
Sbjct: 11 KWTIEEKELFEQGLAKF-----GRRWTKISKLIGSRTVLQVKSYARQYFKN 56


>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
          F-Hb80.4 In Complex With The 1918 Influenza Virus
          Hemagglutinin.
 pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
          F-Hb80.4 In Complex With The 1918 Influenza Virus
          Hemagglutinin.
 pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
          F-Hb80.4 In Complex With The 1918 Influenza Virus
          Hemagglutinin
          Length = 74

 Score = 30.0 bits (66), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 7  KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHF 52
          + W + EN AFE  ++   K+  D  W K+   V  +T +E+K H+
Sbjct: 21 RPWKFSENIAFEIALSFTNKDTPDR-WKKVAQYVKGRTPEEVKKHY 65


>pdb|2CQR|A Chain A, Solution Structure Of Rsgi Ruh-043, A Myb Dna-Binding
          Domain In Human Cdna
          Length = 73

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 4  SNQKQWSWEENKAFENGVALY-YKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56
          S ++ W+  + K  E  +AL  Y  G  + W KI   VP+K+ ++    +K L+
Sbjct: 16 SAEEPWTQNQQKLLE--LALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLV 67


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.132    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,930,863
Number of Sequences: 62578
Number of extensions: 110261
Number of successful extensions: 240
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 19
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)