BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040518
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus
GN=DIVARICATA PE=2 SV=1
Length = 307
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 8 QWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEFGFE 67
+W+ ENKAFEN +A++ E W ++ VP KT+ ++ +K+L +D+ IE GF
Sbjct: 25 RWTAAENKAFENALAVF-DENTPNRWERVAERVPGKTVGDVMRQYKELEDDVSSIEAGFV 83
Query: 68 PV 69
PV
Sbjct: 84 PV 85
>sp|Q58FS3|RAD_ANTMA Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1
SV=1
Length = 93
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEFGF 66
+ WS +ENKAFE +A+Y K+ D W + V +T +E+K H++ L+ED++ IE G
Sbjct: 9 RPWSAKENKAFERALAVYDKDTPDR-WANVARAVEGRTPEEVKKHYEILVEDIKYIESGK 67
Query: 67 EP 68
P
Sbjct: 68 VP 69
>sp|Q1A173|RADL6_ARATH Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1
Length = 97
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 2 SGSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61
S S+ W++ +NK FE +A+Y K+ D W + V KT++E+K H+ L+EDL
Sbjct: 5 SRSSISPWTFSQNKMFERALAVYDKDTPDR-WHNVAKAVGGKTVEEVKRHYDILVEDLIN 63
Query: 62 IEFGFEPV 69
IE G P+
Sbjct: 64 IETGRVPL 71
>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1
Length = 100
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 9 WSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEFGFEP 68
W+ ++NKAFE +A Y ++ + W + +V KT +E+K H++ L++D+ IE G P
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNR-WQNVAKVVGGKTTEEVKRHYELLVQDINSIENGHVP 72
>sp|Q9SIJ5|RADL2_ARATH Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1
Length = 101
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 9 WSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEFGFEP 68
W+ ++NKAFE +A+Y ++ D W + V KT +E K + L+ D+E IE G P
Sbjct: 14 WTVKQNKAFERALAVYDQDTPDR-WHNVARAVGGKTPEEAKRQYDLLVRDIESIENGHVP 72
Query: 69 VSIDYHQQYKNED 81
DY N +
Sbjct: 73 FP-DYKTTTGNSN 84
>sp|Q6NNN0|RADL3_ARATH Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1
Length = 81
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 9 WSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEFGFEP 68
W+ +ENK FE +A Y ++ D W + V K+ +E++ H++ L+ D+ IE G P
Sbjct: 12 WTRKENKLFERALATYDQDTPDR-WHNVARAVGGKSAEEVRRHYELLIRDVNDIESGRYP 70
>sp|Q8GW75|RADL5_ARATH Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1
Length = 100
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 12 EENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEFGFEPV 69
++NK FE +A+Y K+ D W + V +K+ +E+K H+ L+EDL IE P+
Sbjct: 15 KQNKMFERALAVYDKDTPDR-WQNVAKAVGSKSAEEVKRHYDILVEDLMNIEQDLVPL 71
>sp|P34454|YMA9_CAEEL Uncharacterized protein F54F2.9 OS=Caenorhabditis elegans
GN=F54F2.9 PE=4 SV=3
Length = 414
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 9 WSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLME 57
WS E KAFE + Y K G DE W +I + +KT ++ V FK+L E
Sbjct: 357 WSQAEQKAFETALQKYPK-GTDERWERISEEIGSKTKKQVMVRFKQLAE 404
>sp|Q1G3C4|RADL4_ARATH Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1
Length = 77
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 12 EENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEFGFEP 68
E+K FE +A + K+ D W KI V K+ +E+K H++ L+ D+ IE G P
Sbjct: 14 REDKQFEMALAKFDKDTPDR-WQKIARAVGGKSTEEVKRHYELLLRDVNDIESGRYP 69
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 2 SGSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54
S + Q +W+ EE + FE G+A + + W KI L+ T+T+ ++K + K+
Sbjct: 95 SSAAQTRWAEEEKELFEKGLAQFGR-----RWTKIAKLIGTRTVLQVKSYAKQ 142
>sp|Q54IF9|MYBG_DICDI Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1
Length = 423
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54
++ W+ EE++ F + L+ D +W KI S V +KT+ +I+ H +K
Sbjct: 41 RENWTDEEHQKFLEALTLF-----DRDWKKIESFVGSKTVIQIRSHAQK 84
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 1 MSGSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLE 60
+SG+ + W+ EE + F LY K+ + KI V TKTI +++ H +K LE
Sbjct: 145 ISGATRSSWTKEEERLFVEAYKLYDKDNK-----KIQEHVKTKTILQVRSHAQKFALKLE 199
>sp|Q9ZLW5|GLNA_HELPJ Glutamine synthetase OS=Helicobacter pylori (strain J99) GN=glnA
PE=3 SV=1
Length = 481
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 11 WEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEF 64
W +K+FENGV ++ G+ ++ + PT T+ +I+ K++ + L F
Sbjct: 168 WNRDKSFENGVNFGHRPGKQGGYMPVP---PTDTMMDIRTEIVKVLNQVGLETF 218
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 3 GSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54
GS +W+ EE + FE G+ Y + W KI L+ ++T+ ++K + ++
Sbjct: 116 GSYSLKWTSEEKELFEQGLVKYGR-----RWTKIAKLIGSRTVLQVKSYARQ 162
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 3 GSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54
S+ +W+ EE + FE G+A + + W KI +L+ ++T+ ++K + ++
Sbjct: 112 ASHSVKWTVEEKELFEQGLAKFGR-----RWTKIATLLKSRTVLQVKSYARQ 158
>sp|P94845|GLNA_HELPY Glutamine synthetase OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=glnA PE=3 SV=2
Length = 481
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 11 WEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEF 64
W +++FENGV ++ G+ ++ + PT T+ +I+ K++ + L F
Sbjct: 168 WNRDRSFENGVNFGHRPGKQGGYMPVP---PTDTMMDIRTEIVKVLNQVGLETF 218
>sp|Q6R0H0|ASG4_ARATH Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1
Length = 287
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54
+++ W+ +E+ F + L+ D +W KI + V +KT+ +I+ H +K
Sbjct: 60 SRENWTEQEHDKFLEALHLF-----DRDWKKIKAFVGSKTVIQIRSHAQK 104
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 8 QWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEFGFE 67
+W+ EE + FE G+A + + W KI L+ ++T+ ++K + ++ ++ ++ G +
Sbjct: 120 KWTIEEKELFEQGLAKFGR-----RWTKISKLIGSRTVLQVKSYARQYFKN--KVKCGLD 172
Query: 68 PVSID----YHQQYKNED 81
+ + ++ Q KNED
Sbjct: 173 KETPNQKTGHNLQVKNED 190
>sp|A6UTK3|SYL_META3 Leucine--tRNA ligase OS=Methanococcus aeolicus (strain Nankai-3 /
ATCC BAA-1280) GN=leuS PE=3 SV=1
Length = 969
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Query: 8 QWSWEENKAFENGVALYYKEGQDEEWVKIHSLVP------------TKTIDEIKVHFKKL 55
Q WEE+K FEN L Y E + ++ I + P T TI EI ++++
Sbjct: 13 QKRWEEDKIFENPSKLKYTEQEKKDKFFITAAFPYLNGVLHAGHLRTFTIPEITARYQRM 72
Query: 56 MEDLELIEFGF 66
L FGF
Sbjct: 73 NNKTVLWTFGF 83
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLE 60
+++W+ EE+ F + LY + W KI V TKT +I+ H +K +E
Sbjct: 24 RERWTEEEHNRFIEALRLYGRA-----WQKIEEHVATKTAVQIRSHAQKFFSKVE 73
>sp|Q6BRU4|HIS1_DEBHA ATP phosphoribosyltransferase OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=HIS1 PE=3 SV=1
Length = 304
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 22 ALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54
AL K ++EEWV + S+V K I +I KK
Sbjct: 256 ALEKKSDENEEWVAVSSMVEKKKISDIMDDLKK 288
>sp|Q96MK2|FA65C_HUMAN Protein FAM65C OS=Homo sapiens GN=FAM65C PE=2 SV=4
Length = 946
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 27 EGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIE 63
E Q W + HS + +++ +++ HF +L +++ LIE
Sbjct: 756 EEQIITWFQFHSYLQRQSVSDLEKHFTQLTKEVTLIE 792
>sp|Q54G30|PKS27_DICDI Probable polyketide synthase 27 OS=Dictyostelium discoideum GN=pks27
PE=3 SV=1
Length = 2684
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 10 SWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEFGFEPV 69
S++ N F +G G D E+ IHS + K + + + K+ EDL+L ++G + +
Sbjct: 2572 SYQINTNFSSG------SGSDNEF--IHSTILNKISELLSIDESKVNEDLQLTQYGMDSL 2623
Query: 70 SI 71
I
Sbjct: 2624 VI 2625
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,054,222
Number of Sequences: 539616
Number of extensions: 1317251
Number of successful extensions: 2860
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2840
Number of HSP's gapped (non-prelim): 38
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)