Query 040518
Match_columns 81
No_of_seqs 101 out of 452
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 14:45:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cqq_A RSGI RUH-037, DNAJ homo 100.0 1.7E-30 5.8E-35 160.7 7.5 69 1-72 3-71 (72)
2 2cjj_A Radialis; plant develop 100.0 6.9E-30 2.4E-34 164.6 8.4 74 1-75 1-76 (93)
3 1wgx_A KIAA1903 protein; MYB D 99.9 5.4E-23 1.9E-27 127.8 4.7 56 4-60 6-61 (73)
4 4eef_G F-HB80.4, designed hema 99.9 2.6E-24 8.9E-29 134.2 -1.3 53 1-54 13-67 (74)
5 2cqr_A RSGI RUH-043, DNAJ homo 99.9 2.8E-22 9.5E-27 124.1 5.8 57 3-60 15-71 (73)
6 2yum_A ZZZ3 protein, zinc fing 99.7 1E-16 3.5E-21 97.6 8.0 66 3-72 5-72 (75)
7 2yus_A SWI/SNF-related matrix- 99.6 3.3E-17 1.1E-21 102.2 2.0 61 4-69 16-77 (79)
8 2din_A Cell division cycle 5-l 99.6 6.3E-15 2.1E-19 87.9 5.7 58 3-66 6-63 (66)
9 1x41_A Transcriptional adaptor 99.5 2.4E-14 8.1E-19 84.3 5.6 48 5-56 7-54 (60)
10 2cu7_A KIAA1915 protein; nucle 99.5 1.2E-13 4E-18 83.8 7.4 53 4-61 7-59 (72)
11 1guu_A C-MYB, MYB proto-oncoge 99.5 1.1E-13 3.9E-18 78.8 6.2 47 6-56 3-49 (52)
12 2d9a_A B-MYB, MYB-related prot 99.4 1.4E-13 4.6E-18 80.6 5.5 49 4-56 6-54 (60)
13 2elk_A SPCC24B10.08C protein; 99.4 2.2E-13 7.4E-18 79.9 5.5 46 6-55 9-55 (58)
14 1gvd_A MYB proto-oncogene prot 99.4 2.3E-13 7.8E-18 77.6 5.1 47 6-56 3-49 (52)
15 2eqr_A N-COR1, N-COR, nuclear 99.4 2.9E-13 9.8E-18 80.1 5.5 44 6-54 12-55 (61)
16 1w0t_A Telomeric repeat bindin 99.4 2.1E-12 7.3E-17 74.0 6.4 47 6-56 2-50 (53)
17 2dim_A Cell division cycle 5-l 99.4 1.2E-12 4.1E-17 78.6 5.5 49 5-57 8-56 (70)
18 2k9n_A MYB24; R2R3 domain, DNA 99.3 3.5E-12 1.2E-16 81.8 6.4 54 3-61 50-103 (107)
19 1gv2_A C-MYB, MYB proto-oncoge 99.3 3.4E-12 1.1E-16 81.1 6.2 50 3-57 53-102 (105)
20 3sjm_A Telomeric repeat-bindin 99.3 9.1E-12 3.1E-16 74.6 6.7 48 6-57 11-60 (64)
21 1ity_A TRF1; helix-turn-helix, 99.3 1.2E-11 4.2E-16 74.1 6.9 50 4-57 8-59 (69)
22 3osg_A MYB21; transcription-DN 99.3 1E-11 3.6E-16 81.7 6.8 53 3-60 59-111 (126)
23 2yqk_A Arginine-glutamic acid 99.2 4.1E-11 1.4E-15 71.4 6.6 45 4-53 7-52 (63)
24 1h8a_C AMV V-MYB, MYB transfor 99.2 1.4E-11 4.8E-16 80.9 4.8 48 4-56 77-124 (128)
25 2ltp_A Nuclear receptor corepr 98.8 1.5E-12 5E-17 82.1 0.0 50 5-59 15-64 (89)
26 2llk_A Cyclin-D-binding MYB-li 99.2 3.7E-11 1.3E-15 74.0 5.9 50 3-58 20-69 (73)
27 1gv2_A C-MYB, MYB proto-oncoge 99.2 2.7E-11 9.1E-16 76.9 5.1 48 5-56 3-50 (105)
28 1h8a_C AMV V-MYB, MYB transfor 99.2 3.5E-11 1.2E-15 79.0 5.5 50 3-56 24-73 (128)
29 2k9n_A MYB24; R2R3 domain, DNA 99.2 4.7E-11 1.6E-15 76.5 5.4 46 7-56 2-47 (107)
30 2crg_A Metastasis associated p 99.1 1.4E-10 4.8E-15 70.5 6.6 44 5-53 7-51 (70)
31 1h89_C C-MYB, MYB proto-oncoge 99.1 5.8E-11 2E-15 80.2 5.0 49 3-56 107-155 (159)
32 3osg_A MYB21; transcription-DN 99.1 1.1E-10 3.8E-15 76.7 6.1 48 4-56 9-56 (126)
33 3zqc_A MYB3; transcription-DNA 99.1 7.7E-11 2.6E-15 77.8 4.8 53 3-60 51-103 (131)
34 3zqc_A MYB3; transcription-DNA 99.0 9.4E-11 3.2E-15 77.4 2.9 46 7-56 3-48 (131)
35 1h89_C C-MYB, MYB proto-oncoge 99.0 4.3E-10 1.5E-14 75.9 5.6 49 4-56 56-104 (159)
36 2iw5_B Protein corest, REST co 99.0 6.8E-10 2.3E-14 81.3 6.7 48 4-56 131-178 (235)
37 2ckx_A NGTRF1, telomere bindin 99.0 1.7E-09 5.7E-14 67.9 6.5 61 8-73 2-69 (83)
38 4a69_C Nuclear receptor corepr 98.9 1.9E-09 6.4E-14 68.8 5.3 44 6-54 43-86 (94)
39 2aje_A Telomere repeat-binding 98.7 2.6E-08 8.8E-13 65.0 6.7 63 5-72 12-81 (105)
40 1ign_A Protein (RAP1); RAP1,ye 98.7 8.7E-09 3E-13 75.9 4.7 54 4-58 6-61 (246)
41 1x58_A Hypothetical protein 49 98.7 3.1E-08 1.1E-12 59.6 6.3 49 4-57 6-57 (62)
42 2juh_A Telomere binding protei 98.7 3E-08 1E-12 66.2 5.6 50 5-58 16-69 (121)
43 2roh_A RTBP1, telomere binding 98.6 6.5E-08 2.2E-12 64.6 6.3 49 5-57 30-82 (122)
44 1ofc_X ISWI protein; nuclear p 98.6 5.2E-08 1.8E-12 73.3 5.2 59 7-69 111-179 (304)
45 2xag_B REST corepressor 1; ami 98.5 1.7E-07 5.8E-12 74.2 5.9 45 5-54 379-423 (482)
46 1ug2_A 2610100B20RIK gene prod 98.4 5.3E-07 1.8E-11 58.1 6.2 52 8-61 35-86 (95)
47 3hm5_A DNA methyltransferase 1 98.4 1.2E-06 4.1E-11 56.2 6.6 52 7-63 31-87 (93)
48 2lr8_A CAsp8-associated protei 97.6 8.4E-08 2.9E-12 58.9 0.0 50 8-60 16-65 (70)
49 1fex_A TRF2-interacting telome 97.8 5.7E-05 2E-09 44.2 6.1 50 6-56 2-57 (59)
50 4b4c_A Chromodomain-helicase-D 97.8 4.1E-05 1.4E-09 52.9 5.9 54 3-58 4-59 (211)
51 2xag_B REST corepressor 1; ami 97.7 5E-06 1.7E-10 65.9 0.0 41 7-52 190-230 (482)
52 4iej_A DNA methyltransferase 1 97.6 0.0003 1E-08 45.0 6.8 52 7-63 31-87 (93)
53 2ebi_A DNA binding protein GT- 97.4 0.00053 1.8E-08 41.8 6.2 60 6-65 4-72 (86)
54 1irz_A ARR10-B; helix-turn-hel 97.3 0.0017 6E-08 38.8 7.2 55 5-61 6-62 (64)
55 1ign_A Protein (RAP1); RAP1,ye 96.9 0.0032 1.1E-07 46.3 7.5 28 32-59 173-200 (246)
56 1ofc_X ISWI protein; nuclear p 96.8 0.0045 1.5E-07 46.5 7.3 58 3-61 209-278 (304)
57 2y9y_A Imitation switch protei 96.0 0.009 3.1E-07 46.1 4.9 51 7-61 124-175 (374)
58 2xb0_X Chromo domain-containin 95.7 0.034 1.2E-06 41.0 6.7 50 6-57 3-54 (270)
59 2y9y_A Imitation switch protei 94.7 0.074 2.5E-06 41.0 6.3 56 5-61 227-294 (374)
60 4b4c_A Chromodomain-helicase-D 90.8 1.7 5.9E-05 29.4 8.1 51 6-60 134-198 (211)
61 2ecc_A Homeobox and leucine zi 88.8 2.6 8.8E-05 25.3 7.2 53 2-56 3-55 (76)
62 2hi3_A Homeodomain-only protei 86.8 3 0.0001 23.9 6.7 59 1-61 1-60 (73)
63 2cxy_A BAF250B subunit, HBAF25 83.6 2.2 7.6E-05 27.3 4.9 44 31-74 73-121 (125)
64 2ys8_A RAB-related GTP-binding 78.6 8.2 0.00028 23.0 6.2 47 7-60 10-56 (90)
65 2eqy_A RBP2 like, jumonji, at 75.0 6.8 0.00023 25.0 5.1 35 31-65 64-102 (122)
66 2lm1_A Lysine-specific demethy 73.5 6.8 0.00023 24.1 4.7 35 31-65 66-104 (107)
67 2jxj_A Histone demethylase jar 72.4 1.9 6.6E-05 26.2 1.9 35 31-65 58-96 (96)
68 2dn0_A Zinc fingers and homeob 71.8 12 0.0004 21.4 7.0 55 5-61 11-65 (76)
69 3a02_A Homeobox protein arista 70.9 11 0.00036 20.5 5.7 48 5-54 2-49 (60)
70 1p4w_A RCSB; solution structur 69.7 16 0.00054 22.2 5.7 57 6-70 32-98 (99)
71 2xb0_X Chromo domain-containin 69.6 5.2 0.00018 29.2 4.0 29 6-38 168-196 (270)
72 1qgp_A Protein (double strande 69.4 10 0.00035 22.1 4.6 46 11-58 13-58 (77)
73 2kk0_A AT-rich interactive dom 66.5 4.4 0.00015 26.7 2.8 39 31-69 86-129 (145)
74 2hzd_A Transcriptional enhance 66.1 11 0.00038 23.1 4.4 55 4-59 4-75 (82)
75 1kkx_A Transcription regulator 65.2 10 0.00036 24.3 4.4 33 30-62 69-101 (123)
76 1qbj_A Protein (double-strande 65.2 13 0.00044 22.1 4.5 43 14-58 12-54 (81)
77 2dmu_A Homeobox protein goosec 65.0 16 0.00054 20.4 6.2 48 6-55 11-58 (70)
78 2o8x_A Probable RNA polymerase 64.2 14 0.00047 19.7 4.2 48 8-62 15-62 (70)
79 1ig7_A Homeotic protein MSX-1; 64.1 15 0.0005 19.7 6.7 47 6-54 4-50 (58)
80 2ly9_A Zinc fingers and homeob 64.0 17 0.00059 20.4 6.6 59 3-63 7-65 (74)
81 2da1_A Alpha-fetoprotein enhan 62.7 18 0.0006 20.2 6.3 48 6-55 11-58 (70)
82 2hdd_A Protein (engrailed home 62.5 17 0.00057 19.8 6.0 48 5-54 6-53 (61)
83 1jgg_A Segmentation protein EV 61.8 17 0.00058 19.6 6.1 48 5-54 4-51 (60)
84 2dmt_A Homeobox protein BARH-l 61.2 21 0.00072 20.5 6.1 47 7-55 22-68 (80)
85 1bw5_A ISL-1HD, insulin gene e 60.9 19 0.00064 19.8 6.0 48 5-54 6-53 (66)
86 1akh_A Protein (mating-type pr 60.9 18 0.00061 19.5 5.5 47 6-54 9-55 (61)
87 2dms_A Homeobox protein OTX2; 60.1 22 0.00075 20.4 6.6 54 6-61 11-64 (80)
88 2da3_A Alpha-fetoprotein enhan 59.8 18 0.00063 20.5 4.4 47 7-55 22-68 (80)
89 2cra_A Homeobox protein HOX-B1 59.4 21 0.00072 19.9 6.7 48 6-55 11-58 (70)
90 1uhs_A HOP, homeodomain only p 59.3 21 0.00073 20.0 6.5 56 3-60 2-58 (72)
91 2da6_A Hepatocyte nuclear fact 59.1 30 0.001 21.7 5.7 48 6-54 10-77 (102)
92 2da2_A Alpha-fetoprotein enhan 59.1 21 0.00072 19.8 6.8 48 6-55 11-58 (70)
93 1fs1_B SKP1, cyclin A/CDK2-ass 59.0 4.8 0.00016 25.9 1.9 41 12-53 90-134 (141)
94 3i4p_A Transcriptional regulat 58.9 17 0.0006 23.2 4.6 40 14-58 5-44 (162)
95 2dmq_A LIM/homeobox protein LH 58.9 23 0.00078 20.2 6.8 47 6-54 11-57 (80)
96 2jrz_A Histone demethylase jar 58.8 6.9 0.00023 24.7 2.6 35 31-65 62-100 (117)
97 1fse_A GERE; helix-turn-helix 57.7 20 0.0007 19.2 5.0 48 6-61 9-56 (74)
98 2k40_A Homeobox expressed in E 57.7 22 0.00075 19.6 6.3 53 5-59 4-56 (67)
99 2p1m_A SKP1-like protein 1A; F 57.1 5.7 0.00019 26.1 2.0 43 10-53 92-138 (160)
100 1zq3_P PRD-4, homeotic bicoid 57.0 23 0.00079 19.7 5.8 49 5-55 5-53 (68)
101 1fjl_A Paired protein; DNA-bin 56.7 26 0.00088 20.1 6.2 47 6-54 22-68 (81)
102 1yz8_P Pituitary homeobox 2; D 55.7 24 0.00083 19.5 5.0 50 5-56 6-55 (68)
103 1x3u_A Transcriptional regulat 55.3 24 0.00082 19.3 4.6 45 9-61 17-61 (79)
104 2cue_A Paired box protein PAX6 54.5 28 0.00097 19.9 6.4 46 6-53 11-56 (80)
105 3v7d_A Suppressor of kinetocho 54.4 6.7 0.00023 26.2 2.1 42 11-53 101-146 (169)
106 2e19_A Transcription factor 8; 53.1 28 0.00096 19.5 6.3 50 3-54 4-53 (64)
107 2h1k_A IPF-1, pancreatic and d 53.1 26 0.00089 19.1 6.2 48 5-54 6-53 (63)
108 2djn_A Homeobox protein DLX-5; 52.7 28 0.00096 19.4 6.3 48 6-55 11-58 (70)
109 1k61_A Mating-type protein alp 52.6 26 0.00088 18.8 6.0 46 7-54 3-51 (60)
110 2e1o_A Homeobox protein PRH; D 52.2 29 0.00098 19.3 7.2 47 7-55 12-58 (70)
111 2l7z_A Homeobox protein HOX-A1 51.6 31 0.0011 19.5 5.5 52 5-58 10-61 (73)
112 1du6_A PBX1, homeobox protein 51.1 28 0.00096 18.9 5.2 48 5-54 6-56 (64)
113 3mzy_A RNA polymerase sigma-H 51.0 31 0.0011 20.7 4.7 30 32-62 126-155 (164)
114 2da7_A Zinc finger homeobox pr 50.6 38 0.0013 20.2 5.1 45 11-57 14-58 (71)
115 1je8_A Nitrate/nitrite respons 50.6 26 0.0009 20.0 4.1 46 8-61 21-66 (82)
116 1ahd_P Antennapedia protein mu 50.4 31 0.0011 19.2 6.8 52 3-56 3-54 (68)
117 3c57_A Two component transcrip 50.4 36 0.0012 19.9 4.8 46 8-61 27-72 (95)
118 3ulq_B Transcriptional regulat 50.4 34 0.0012 20.1 4.6 46 7-60 28-73 (90)
119 2li6_A SWI/SNF chromatin-remod 49.2 10 0.00035 23.8 2.2 31 31-61 71-101 (116)
120 1hbk_A ACBP, acyl-COA binding 48.3 21 0.00071 21.5 3.5 28 32-60 57-84 (89)
121 2ast_A S-phase kinase-associat 48.0 7.6 0.00026 25.3 1.5 40 13-53 96-139 (159)
122 1c20_A DEAD ringer protein; DN 47.1 28 0.00096 22.0 4.1 37 31-67 74-115 (128)
123 2cuf_A FLJ21616 protein; homeo 46.9 43 0.0015 19.8 7.3 55 6-62 11-80 (95)
124 1nk2_P Homeobox protein VND; h 46.4 39 0.0013 19.2 6.7 49 6-56 13-61 (77)
125 1hx1_B BAG-1, BAG-family molec 46.3 11 0.00038 24.6 2.0 28 43-70 18-45 (114)
126 2d5v_A Hepatocyte nuclear fact 45.9 58 0.002 21.0 6.2 48 6-55 101-148 (164)
127 3a03_A T-cell leukemia homeobo 45.5 34 0.0012 18.2 5.6 46 7-54 2-47 (56)
128 2p7v_B Sigma-70, RNA polymeras 45.1 36 0.0012 18.4 3.9 49 10-61 7-55 (68)
129 1ufm_A COP9 complex subunit 4; 44.8 32 0.0011 20.5 3.9 55 3-58 3-57 (84)
130 2e1c_A Putative HTH-type trans 44.5 53 0.0018 21.3 5.3 40 14-58 29-68 (171)
131 1ftt_A TTF-1 HD, thyroid trans 44.2 40 0.0014 18.6 6.5 52 4-57 4-55 (68)
132 3kw6_A 26S protease regulatory 43.7 33 0.0011 19.2 3.7 38 15-53 10-47 (78)
133 2cb8_A Acyl-COA-binding protei 43.1 27 0.00091 21.0 3.3 29 32-61 55-83 (87)
134 2dk8_A DNA-directed RNA polyme 42.5 55 0.0019 19.7 7.2 42 13-58 16-57 (81)
135 1i6z_A BAG-family molecular ch 42.3 15 0.00052 24.5 2.3 26 43-68 28-53 (135)
136 1b72_B Protein (PBX1); homeodo 42.2 48 0.0017 19.0 5.7 48 5-54 4-54 (87)
137 2vi6_A Homeobox protein nanog; 42.1 41 0.0014 18.1 5.8 48 5-54 6-53 (62)
138 1oeg_A Apolipoprotein E; siali 41.6 11 0.00039 18.5 1.2 17 45-61 3-19 (26)
139 3epy_A Acyl-COA-binding domain 41.4 29 0.001 21.0 3.3 28 33-61 58-85 (89)
140 2lbb_A Acyl COA binding protei 41.1 31 0.001 21.4 3.5 29 32-61 64-92 (96)
141 1wi3_A DNA-binding protein SAT 40.5 58 0.002 19.5 6.7 52 5-57 10-61 (71)
142 1st7_A ACBP, acyl-COA-binding 40.4 22 0.00074 21.3 2.6 29 32-61 54-82 (86)
143 1oyi_A Double-stranded RNA-bin 40.0 41 0.0014 20.3 3.8 27 31-58 31-57 (82)
144 1b72_A Protein (homeobox prote 39.8 58 0.002 19.3 5.8 49 6-56 38-86 (97)
145 2kt0_A Nanog, homeobox protein 39.7 53 0.0018 18.7 6.7 47 6-54 26-72 (84)
146 3fp5_A Acyl-COA binding protei 38.4 39 0.0013 21.2 3.7 24 39-62 67-90 (106)
147 2dmp_A Zinc fingers and homeob 38.3 61 0.0021 19.1 5.4 53 8-62 19-71 (89)
148 1hqc_A RUVB; extended AAA-ATPa 38.2 43 0.0015 22.7 4.2 51 9-62 245-295 (324)
149 2cop_A Acyl-coenzyme A binding 37.7 32 0.0011 21.6 3.2 29 32-61 61-89 (109)
150 1ku3_A Sigma factor SIGA; heli 37.3 52 0.0018 17.9 4.7 49 9-60 11-59 (73)
151 1puf_A HOX-1.7, homeobox prote 36.8 58 0.002 18.4 6.2 47 6-54 17-63 (77)
152 2rnj_A Response regulator prot 36.4 32 0.0011 19.8 2.9 46 8-61 29-74 (91)
153 1mnm_C Protein (MAT alpha-2 tr 35.9 64 0.0022 18.6 6.0 47 6-54 31-80 (87)
154 2dbb_A Putative HTH-type trans 35.8 77 0.0026 19.5 6.2 43 10-58 8-50 (151)
155 3a01_A Homeodomain-containing 35.7 69 0.0023 18.9 6.6 50 6-57 21-70 (93)
156 2da5_A Zinc fingers and homeob 35.5 61 0.0021 18.3 5.4 53 7-61 12-64 (75)
157 1puf_B PRE-B-cell leukemia tra 35.5 59 0.002 18.1 6.3 50 5-56 4-56 (73)
158 3aji_B S6C, proteasome (prosom 35.4 43 0.0015 18.9 3.3 38 15-53 8-45 (83)
159 3mx6_A Methionine aminopeptida 35.1 1E+02 0.0036 20.9 5.8 43 8-58 118-160 (262)
160 1ig6_A MRF-2, modulator recogn 35.0 6.9 0.00024 24.1 -0.3 41 31-71 55-102 (107)
161 1oef_A Apolipoprotein E; glyco 35.0 39 0.0013 15.9 2.7 17 45-61 7-23 (26)
162 3hug_A RNA polymerase sigma fa 34.8 65 0.0022 18.4 4.3 29 32-61 55-83 (92)
163 1o0x_A Methionine aminopeptida 34.4 1E+02 0.0036 21.0 5.7 42 9-58 128-169 (262)
164 2xsd_C POU domain, class 3, tr 33.2 1E+02 0.0035 20.2 5.6 53 6-60 103-155 (164)
165 1i1g_A Transcriptional regulat 32.5 47 0.0016 20.1 3.3 40 13-58 6-45 (141)
166 2wh5_A Acyl-COA-binding domain 32.4 59 0.002 20.3 3.8 30 32-62 65-94 (106)
167 2r5y_A Homeotic protein sex co 32.2 75 0.0026 18.3 6.5 47 6-54 32-78 (88)
168 1e3o_C Octamer-binding transcr 32.0 1E+02 0.0036 19.9 6.2 48 6-55 105-152 (160)
169 2pjp_A Selenocysteine-specific 32.0 88 0.003 19.0 5.0 45 10-57 2-46 (121)
170 3rvc_A NS1, NS1A, non-structur 31.9 49 0.0017 22.1 3.5 34 39-72 87-139 (152)
171 2jpc_A SSRB; DNA binding prote 31.9 57 0.0019 16.8 4.0 28 33-61 16-43 (61)
172 2cyy_A Putative HTH-type trans 31.7 93 0.0032 19.2 5.6 43 10-58 6-48 (151)
173 3nar_A ZHX1, zinc fingers and 31.5 83 0.0028 18.6 6.1 49 6-56 29-77 (96)
174 1au7_A Protein PIT-1, GHF-1; c 31.3 1E+02 0.0036 19.7 6.2 47 6-54 91-137 (146)
175 1x2n_A Homeobox protein pknox1 31.2 71 0.0024 17.7 6.1 49 6-55 11-61 (73)
176 1b8i_A Ultrabithorax, protein 30.8 78 0.0027 18.1 6.0 47 6-54 24-70 (81)
177 2opa_A Probable tautomerase YW 30.7 59 0.002 16.8 3.2 22 40-61 8-29 (61)
178 2cg4_A Regulatory protein ASNC 30.6 97 0.0033 19.1 5.2 41 12-58 9-49 (152)
179 2pn6_A ST1022, 150AA long hypo 30.6 85 0.0029 19.2 4.4 37 17-58 8-44 (150)
180 3flv_A Acyl-COA-binding domain 30.4 55 0.0019 21.1 3.5 28 33-61 82-109 (119)
181 2gg2_A Methionine aminopeptida 30.3 1.3E+02 0.0044 20.4 6.0 42 9-58 117-158 (263)
182 3d1n_I POU domain, class 6, tr 29.8 1.1E+02 0.0038 19.5 6.1 47 6-54 97-143 (151)
183 3k2z_A LEXA repressor; winged 29.6 78 0.0027 20.6 4.2 48 10-58 4-51 (196)
184 2cqu_A Peroxisomal D3,D2-enoyl 29.0 81 0.0028 20.0 4.1 28 33-61 70-97 (116)
185 3rkq_A Homeobox protein NKX-2. 29.0 66 0.0023 16.7 5.9 48 5-54 5-52 (58)
186 2zsg_A Aminopeptidase P, putat 28.5 1.5E+02 0.0052 20.7 6.0 42 9-58 239-280 (359)
187 2ia0_A Putative HTH-type trans 27.6 1.2E+02 0.0043 19.4 4.9 44 9-58 15-58 (171)
188 1otf_A 4-oxalocrotonate tautom 27.5 70 0.0024 16.5 3.2 23 39-61 7-29 (62)
189 1zug_A Phage 434 CRO protein; 27.5 51 0.0017 17.1 2.5 30 42-71 16-45 (71)
190 1ucr_A Protein DSVD; dissimila 27.0 70 0.0024 19.4 3.3 26 33-58 24-49 (78)
191 3nau_A Zinc fingers and homeob 26.7 98 0.0033 17.9 5.8 43 10-54 12-54 (66)
192 1otg_A 5-carboxymethyl-2-hydro 26.5 75 0.0026 19.7 3.5 24 39-62 67-90 (125)
193 1r69_A Repressor protein CI; g 26.4 53 0.0018 16.9 2.5 30 42-71 14-43 (69)
194 1kp0_A Creatine amidinohydrola 26.2 1.8E+02 0.0061 20.8 6.0 42 9-58 269-310 (402)
195 3ig4_A XAA-Pro aminopeptidase; 26.2 1.5E+02 0.0053 22.1 5.8 44 7-58 276-319 (427)
196 1wh5_A ZF-HD homeobox family p 26.2 99 0.0034 17.8 6.7 46 7-54 22-71 (80)
197 1tty_A Sigma-A, RNA polymerase 26.1 81 0.0028 17.9 3.4 31 30-61 38-68 (87)
198 2krk_A 26S protease regulatory 26.1 47 0.0016 19.4 2.4 38 15-53 18-55 (86)
199 2guz_B Mitochondrial import in 26.0 48 0.0016 18.9 2.3 18 43-60 19-36 (65)
200 1le8_B Mating-type protein alp 25.8 1E+02 0.0034 17.7 6.0 49 7-57 7-58 (83)
201 3o9x_A Uncharacterized HTH-typ 25.4 56 0.0019 19.8 2.7 59 9-68 47-110 (133)
202 3q6d_A Proline dipeptidase; st 25.4 1.8E+02 0.0062 20.5 6.0 43 8-58 235-277 (356)
203 2guz_A Mitochondrial import in 25.4 63 0.0022 18.1 2.8 18 42-59 26-43 (71)
204 1x2m_A LAG1 longevity assuranc 25.3 1E+02 0.0034 17.5 4.9 46 7-54 5-51 (64)
205 3k2a_A Homeobox protein MEIS2; 25.2 94 0.0032 17.2 5.4 50 7-57 3-54 (67)
206 2q0o_A Probable transcriptiona 25.2 1.3E+02 0.0046 19.8 4.9 45 8-60 175-219 (236)
207 4ege_A Dipeptidase PEPE; struc 25.0 1.9E+02 0.0065 20.9 6.0 41 10-58 257-297 (378)
208 3tav_A Methionine aminopeptida 25.0 1.7E+02 0.006 20.2 5.8 41 8-56 145-185 (286)
209 2v79_A DNA replication protein 24.9 1.4E+02 0.0047 18.9 5.7 26 31-57 52-77 (135)
210 2auw_A Hypothetical protein NE 24.8 1.6E+02 0.0055 19.8 5.5 56 15-72 78-133 (170)
211 1chm_A Creatine amidinohydrola 24.7 2E+02 0.0067 20.8 6.0 42 9-58 269-310 (401)
212 2m0c_A Homeobox protein arista 24.7 95 0.0032 17.0 6.0 54 6-61 13-66 (75)
213 2ej7_A HCG3 gene; HCG3 protein 24.5 60 0.0021 18.3 2.6 19 41-59 19-37 (82)
214 3ezq_B Protein FADD; apoptosis 24.5 95 0.0033 19.6 3.8 31 17-49 5-35 (122)
215 3cb6_A FACT complex subunit SP 24.4 2E+02 0.0068 20.9 6.0 42 10-59 305-346 (444)
216 3f5t_A NS1, nonstructural prot 24.3 75 0.0026 22.3 3.4 22 39-60 160-181 (215)
217 2dn9_A DNAJ homolog subfamily 24.1 69 0.0023 17.9 2.8 19 41-59 17-35 (79)
218 2och_A Hypothetical protein DN 24.1 70 0.0024 17.7 2.8 19 41-59 18-36 (73)
219 3f6w_A XRE-family like protein 23.9 52 0.0018 17.9 2.2 28 42-69 27-54 (83)
220 2ctr_A DNAJ homolog subfamily 23.6 69 0.0024 18.5 2.8 19 41-59 17-35 (88)
221 3a1y_A 50S ribosomal protein P 23.6 1E+02 0.0035 17.1 4.5 37 10-50 18-55 (58)
222 1ich_A TNF-1, tumor necrosis f 23.5 50 0.0017 21.0 2.3 30 34-63 17-46 (112)
223 1wh7_A ZF-HD homeobox family p 23.4 1.2E+02 0.004 17.6 6.4 44 7-53 22-70 (80)
224 1hdj_A Human HSP40, HDJ-1; mol 23.4 72 0.0025 17.8 2.8 19 41-59 13-31 (77)
225 3eu6_A NS1, nonstructural prot 23.1 81 0.0028 22.2 3.4 21 39-59 160-180 (215)
226 2ctp_A DNAJ homolog subfamily 23.1 67 0.0023 17.9 2.6 18 41-58 17-34 (78)
227 2xi8_A Putative transcription 22.7 61 0.0021 16.4 2.3 28 42-69 14-41 (66)
228 1or7_A Sigma-24, RNA polymeras 22.7 1.4E+02 0.0049 18.4 5.1 29 32-61 158-186 (194)
229 3e6q_A Putative 5-carboxymethy 22.2 81 0.0028 20.6 3.2 24 39-62 89-112 (146)
230 2dsy_A Hypothetical protein TT 22.2 1.1E+02 0.0038 17.9 3.6 31 42-72 43-76 (87)
231 2ecb_A Zinc fingers and homeob 22.2 1.3E+02 0.0046 17.9 7.4 54 7-62 16-69 (89)
232 1wy2_A XAA-Pro dipeptidase; st 21.9 2.2E+02 0.0075 20.2 6.0 42 9-58 233-274 (351)
233 2p5v_A Transcriptional regulat 21.9 1.5E+02 0.0052 18.4 5.5 44 9-58 8-51 (162)
234 3pka_A Methionine aminopeptida 21.9 1.3E+02 0.0044 20.9 4.4 43 8-58 151-193 (285)
235 2cug_A Mkiaa0962 protein; DNAJ 21.5 80 0.0027 18.2 2.8 29 31-60 18-46 (88)
236 2iw2_A XAA-Pro dipeptidase; me 21.5 2.7E+02 0.0091 21.0 6.5 44 7-58 297-340 (494)
237 2l9r_A Homeobox protein NKX-3. 21.4 1.2E+02 0.0042 17.1 6.0 48 6-55 8-55 (69)
238 2b3h_A Methionine aminopeptida 21.4 1.5E+02 0.0051 21.4 4.7 41 10-58 187-227 (329)
239 2cly_B ATP synthase D chain, m 21.2 62 0.0021 21.6 2.5 30 32-61 11-43 (160)
240 2cfx_A HTH-type transcriptiona 21.1 1.5E+02 0.0052 18.1 5.2 38 16-58 9-46 (144)
241 1bq0_A DNAJ, HSP40; chaperone, 21.0 72 0.0025 18.9 2.6 18 42-59 14-31 (103)
242 3ejb_A Acyl carrier protein; p 20.9 28 0.00095 20.7 0.6 39 31-69 5-44 (97)
243 1jmt_A Splicing factor U2AF 35 20.9 64 0.0022 19.1 2.3 18 44-61 28-45 (104)
244 1wn4_A Vontr protein; helix, p 20.9 42 0.0014 16.7 1.2 12 14-25 8-19 (28)
245 2l16_A SEC-independent protein 20.8 40 0.0014 20.2 1.3 40 16-60 13-52 (78)
246 2o37_A Protein SIS1; HSP40, J- 20.7 98 0.0034 18.0 3.1 20 40-59 17-36 (92)
247 2ewt_A BLDD, putative DNA-bind 20.6 45 0.0015 17.5 1.4 28 42-69 21-50 (71)
248 3s8q_A R-M controller protein; 20.4 60 0.002 17.6 2.0 28 42-69 24-51 (82)
249 2b5a_A C.BCLI; helix-turn-heli 20.2 60 0.0021 17.2 1.9 28 42-69 23-50 (77)
250 1lfb_A Liver transcription fac 20.2 1.6E+02 0.0053 17.8 6.0 50 5-56 12-82 (99)
251 1hfo_A Migration inhibitory fa 20.0 1.2E+02 0.0041 17.8 3.5 23 39-61 63-85 (113)
No 1
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.96 E-value=1.7e-30 Score=160.69 Aligned_cols=69 Identities=14% Similarity=0.318 Sum_probs=65.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCCCCCCC
Q 040518 1 MSGSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEFGFEPVSID 72 (81)
Q Consensus 1 ~~~~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~Ie~g~v~~P~~ 72 (81)
|++++...||.||+++|++||++| |.++++||++||++| |||++||++||+.|++|+ .||+|+||||+|
T Consensus 3 ~~~~~~~~WT~eE~k~fe~al~~~-p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~~~G~vp~P~~ 71 (72)
T 2cqq_A 3 SGSSGAPEWTEEDLSQLTRSMVKF-PGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPGMVSGPSS 71 (72)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHS-CTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC-CCCSCCCSCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHC-CCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc-CccCCCCCCCCC
Confidence 567777899999999999999999 999999999999998 999999999999999997 689999999998
No 2
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.96 E-value=6.9e-30 Score=164.64 Aligned_cols=74 Identities=32% Similarity=0.596 Sum_probs=61.6
Q ss_pred CCCC--CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 040518 1 MSGS--NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEFGFEPVSIDYHQ 75 (81)
Q Consensus 1 ~~~~--s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~Ie~g~v~~P~~~~~ 75 (81)
|+|| +...||.||+++|++||++| |.++++||++||++|||||++||++||+.|++||..||+|+||+|+|...
T Consensus 1 ~~~~~~~~~~WT~eEd~~L~~al~~~-~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~~~ 76 (93)
T 2cjj_A 1 MASTRGSGRPWSAKENKAFERALAVY-DKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYRTT 76 (93)
T ss_dssp -------CCSCCHHHHHHHHHHHHHS-CTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHc-CCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 5554 55689999999999999999 99999999999999999999999999999999999999999999999765
No 3
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.87 E-value=5.4e-23 Score=127.83 Aligned_cols=56 Identities=14% Similarity=0.257 Sum_probs=51.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 040518 4 SNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLE 60 (81)
Q Consensus 4 ~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~ 60 (81)
++...||.+|+++||+||+.| |.++|+||++||++|||||++||++||+.|+++..
T Consensus 6 ~~~~~WT~eE~k~fe~ALa~~-~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~ 61 (73)
T 1wgx_A 6 SGDKEWNEKELQKLHCAFASL-PKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKG 61 (73)
T ss_dssp CSSSCCCHHHHHHHHHHHHHS-CSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHC-CCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Confidence 455689999999999999999 99999999999999999999999999999965543
No 4
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.87 E-value=2.6e-24 Score=134.25 Aligned_cols=53 Identities=26% Similarity=0.597 Sum_probs=44.3
Q ss_pred CCCC--CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 1 MSGS--NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 1 ~~~~--s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
|+|+ +++.||.+|+|+||+||++| |+++|+||++||++|||||++||++||+.
T Consensus 13 m~s~~~ss~~WT~eE~K~FE~ALa~y-p~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 13 MASTRGSGRPWKFSENIAFEIALSFT-NKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp ---------CCCTTHHHHHHHHTSSS-CSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred eccCCCCCCCCCHHHHHHHHHHHHHC-CCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4554 45689999999999999999 99999999999999999999999999974
No 5
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.86 E-value=2.8e-22 Score=124.11 Aligned_cols=57 Identities=25% Similarity=0.490 Sum_probs=53.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 040518 3 GSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLE 60 (81)
Q Consensus 3 ~~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~ 60 (81)
.++...||.+|+++|+.||++| +.++++||.+||++|||||..||++||+.|++||.
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~-g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQY-PRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPS 71 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHS-CSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSCC
T ss_pred ccCCCCCCHHHHHHHHHHHHHc-CCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHccc
Confidence 4566789999999999999999 88899999999999999999999999999999985
No 6
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=97.61 Aligned_cols=66 Identities=26% Similarity=0.418 Sum_probs=54.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCC--chHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCCCCCCC
Q 040518 3 GSNQKQWSWEENKAFENGVALYYKEGQ--DEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEFGFEPVSID 72 (81)
Q Consensus 3 ~~s~~~WT~eE~k~fE~aL~~~~p~~~--~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~Ie~g~v~~P~~ 72 (81)
+.....||.|||++|+.+|.+| +.++ +.+|.+||+.|||||..||++||+.++.. .+..| +++|.+
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~-g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~--~~k~g-~~~pg~ 72 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKY-PPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK--LTKAG-IPVSGP 72 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHS-CCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG--GSTTC-SCCCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHh-CCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH--HHhcC-CCCCCC
Confidence 3455789999999999999999 6544 48999999999999999999999766654 34556 688876
No 7
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.64 E-value=3.3e-17 Score=102.20 Aligned_cols=61 Identities=30% Similarity=0.529 Sum_probs=55.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHH-HHHHhhhhcCCCCC
Q 040518 4 SNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKL-MEDLELIEFGFEPV 69 (81)
Q Consensus 4 ~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L-~~dv~~Ie~g~v~~ 69 (81)
.....||.+|+++|..||.+| + ++|.+||..|||||..||+.||..+ ++|+..+|+|--|.
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~-G----~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~~~~p~ 77 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMY-K----DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDSGPS 77 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHS-S----SCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCCCCCSC
T ss_pred ccCCCcCHHHHHHHHHHHHHh-C----CCHHHHHHHcCCCCHHHHHHHHHHhcccccccccCCCCCC
Confidence 345789999999999999999 5 5899999999999999999999999 99999999886553
No 8
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.3e-15 Score=87.87 Aligned_cols=58 Identities=19% Similarity=0.355 Sum_probs=52.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCC
Q 040518 3 GSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEFGF 66 (81)
Q Consensus 3 ~~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~Ie~g~ 66 (81)
+.....||.|||.+|..++..| + .+|.+||. +||||..||++||..++.....+++|.
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~-g----~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~~ 63 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLM-P----TQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSGP 63 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHC-T----TCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHc-C----CCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCCC
Confidence 4466789999999999999998 4 28999999 889999999999999999999999874
No 9
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=2.4e-14 Score=84.30 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
....||.|||++|..++.+| +. .+|.+||..|||||..||++||..++
T Consensus 7 ~~~~WT~eED~~L~~~v~~~-G~---~~W~~Ia~~~~~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDC-GF---GNWQDVANQMCTKTKEECEKHYMKYF 54 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHT-CT---TCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHH-Cc---CcHHHHHHHhCCCCHHHHHHHHHHHc
Confidence 45689999999999999999 43 47999999999999999999999765
No 10
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.48 E-value=1.2e-13 Score=83.76 Aligned_cols=53 Identities=25% Similarity=0.528 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 4 SNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 4 ~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
.....||.||+.+|..++.+| +. +|..||..|||||..||++||+.++.....
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~-G~----~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKF-GR----RWTKISKLIGSRTVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHT-CS----CHHHHHHHHSSSCHHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCHHHHHHHHHHHHHH-Cc----CHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 355789999999999999999 43 899999999999999999999998876544
No 11
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.47 E-value=1.1e-13 Score=78.75 Aligned_cols=47 Identities=19% Similarity=0.487 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
...||.|||.+|..++.+| +. .+|..||..|||||..||+.||..++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~-G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQN-GT---DDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHH-CS---SCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh-CC---CCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 5689999999999999999 43 37999999999999999999999876
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=1.4e-13 Score=80.56 Aligned_cols=49 Identities=18% Similarity=0.481 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 4 SNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 4 ~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
.....||.|||.+|..++.+| +. .+|..||..|||||..||++||..++
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~-G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQF-GQ---QDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHT-CT---TCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHh-CC---CCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 456789999999999999999 42 47999999999999999999999764
No 13
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.43 E-value=2.2e-13 Score=79.87 Aligned_cols=46 Identities=20% Similarity=0.396 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCC-CCCHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVP-TKTIDEIKVHFKKL 55 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vp-gKS~~ev~~ry~~L 55 (81)
...||.+||.+|..++.+| +. .+|.+||..|| |||..||+.||..+
T Consensus 9 ~~~WT~eED~~L~~~v~~~-G~---~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETL-GL---GNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHT-TT---TCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH-Cc---CCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4579999999999999999 42 47999999999 89999999999875
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.42 E-value=2.3e-13 Score=77.59 Aligned_cols=47 Identities=15% Similarity=0.330 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
.+.||.|||.+|..++.+| +. .+|..||..|||||..||++||..++
T Consensus 3 k~~Wt~eED~~L~~~v~~~-G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKY-GP---KRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHH-CT---TCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHH-Cc---ChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 5689999999999999999 43 36999999999999999999998754
No 15
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.9e-13 Score=80.14 Aligned_cols=44 Identities=14% Similarity=0.248 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
...||++|+++|+.+|++| |+ +|.+||+.|||||+.||+++|-.
T Consensus 12 ~~~WT~eE~~~F~~~~~~~-gk----~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQH-PK----NFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHS-TT----CHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh-CC----CHHHHHHHcCCCCHHHHHHHHHH
Confidence 3579999999999999999 63 79999999999999999999964
No 16
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.35 E-value=2.1e-12 Score=73.98 Aligned_cols=47 Identities=30% Similarity=0.608 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCC--CCCHHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVP--TKTIDEIKVHFKKLM 56 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vp--gKS~~ev~~ry~~L~ 56 (81)
...||+|||.+|..++.+| +. ..|..||..+| |||..||+.||..++
T Consensus 2 r~~WT~eEd~~L~~~v~~~-G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKY-GE---GNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHH-CT---TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH-Cc---CCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3679999999999999999 42 47999999999 999999999999886
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=78.65 Aligned_cols=49 Identities=20% Similarity=0.480 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLME 57 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~ 57 (81)
....||.|||.+|..++.+| +. .+|..||..|||||..||+.||...+.
T Consensus 8 k~~~Wt~eED~~L~~~v~~~-G~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKY-GK---NQWSRIASLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHT-CS---SCHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHHHH-Cc---CCHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence 34589999999999999999 42 479999999999999999999998653
No 18
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.32 E-value=3.5e-12 Score=81.80 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=48.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 3 GSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 3 ~~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
+...+.||.||+.+|..++.+| +. +|..||..|||||..+|++||..|+..+..
T Consensus 50 ~i~~~~WT~eEd~~L~~~~~~~-G~----~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 50 ALRTDPWSPEEDMLLDQKYAEY-GP----KWNKISKFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHT-CS----CHHHHHHHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred cccccccCHHHHHHHHHHHHHh-Cc----CHHHHHHHCCCCCHHHHHHHHHHHHhhHHH
Confidence 3456789999999999999999 42 799999999999999999999999987654
No 19
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.31 E-value=3.4e-12 Score=81.12 Aligned_cols=50 Identities=24% Similarity=0.482 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 040518 3 GSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLME 57 (81)
Q Consensus 3 ~~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~ 57 (81)
+...+.||.||+.+|..++.+| + .+|..||..|||||..+|++||+.++.
T Consensus 53 ~~~~~~Wt~eEd~~L~~~~~~~-G----~~W~~Ia~~l~gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 53 EVKKTSWTEEEDRIIYQAHKRL-G----NRWAEIAKLLPGRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHH-S----SCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred cccccCCCHHHHHHHHHHHHHh-C----CCHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3466789999999999999999 5 379999999999999999999998753
No 20
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.29 E-value=9.1e-12 Score=74.56 Aligned_cols=48 Identities=27% Similarity=0.534 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVP--TKTIDEIKVHFKKLME 57 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vp--gKS~~ev~~ry~~L~~ 57 (81)
...||.|||.+|..++.+| +. ..|..||..+| |||..||++||..|+.
T Consensus 11 k~~WT~eED~~L~~~V~~~-G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKY-GE---GNWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHH-CT---TCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcc-CC---CchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 4579999999999999999 43 36999999987 9999999999998864
No 21
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.28 E-value=1.2e-11 Score=74.11 Aligned_cols=50 Identities=28% Similarity=0.584 Sum_probs=44.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 040518 4 SNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVP--TKTIDEIKVHFKKLME 57 (81)
Q Consensus 4 ~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vp--gKS~~ev~~ry~~L~~ 57 (81)
.....||.||+.+|..++.+| +. ..|..||..+| |||..||+.||..++.
T Consensus 8 ~~r~~WT~eED~~L~~~v~~~-G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 8 RKRQAWLWEEDKNLRSGVRKY-GE---GNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp SSCCCCCHHHHHHHHHHHHHH-CS---SCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH-CC---CcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 345789999999999999999 42 47999999999 9999999999998875
No 22
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.27 E-value=1e-11 Score=81.67 Aligned_cols=53 Identities=21% Similarity=0.409 Sum_probs=47.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 040518 3 GSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLE 60 (81)
Q Consensus 3 ~~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~ 60 (81)
+...+.||.||+.+|..++.+| + .+|.+||..|||||..+|++||..|+..+.
T Consensus 59 ~~~~~~WT~eEd~~L~~~v~~~-G----~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 59 SISHTPWTAEEDALLVQKIQEY-G----RQWAIIAKFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp TSCCSCCCHHHHHHHHHHHHHH-C----SCHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred ccccccCCHHHHHHHHHHHHHH-C----cCHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 3456789999999999999999 5 369999999999999999999999998764
No 23
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=4.1e-11 Score=71.41 Aligned_cols=45 Identities=27% Similarity=0.548 Sum_probs=40.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHH-hCCCCCHHHHHHHHH
Q 040518 4 SNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHS-LVPTKTIDEIKVHFK 53 (81)
Q Consensus 4 ~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~-~vpgKS~~ev~~ry~ 53 (81)
.....||.+|.++|+.+|++| ++ .|.+||. .||+||+.||+++|=
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~y-GK----df~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQY-GK----NFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHT-CS----CHHHHHHHSCTTSCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHh-Cc----cHHHHHHHHcCCCcHHHHHHHHh
Confidence 345689999999999999999 76 3999998 699999999999984
No 24
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.20 E-value=1.4e-11 Score=80.85 Aligned_cols=48 Identities=23% Similarity=0.499 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 4 SNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 4 ~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
...+.||.||+.+|..++.+| + .+|.+||..|||||..+|++||+.|+
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~-G----~~W~~Ia~~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRL-G----NRWAEIAKLLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHH-C----SCHHHHGGGSTTCCHHHHHHHHHTTT
T ss_pred cccccCCHHHHHHHHHHHHHH-C----cCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999 5 37999999999999999999999775
No 25
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.83 E-value=1.5e-12 Score=82.15 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDL 59 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv 59 (81)
..+.||.||+.+|..++.+| + .+|..||..|||||..+|++||..++.-.
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~-G----~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEH-G----RNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 45689999999999999999 4 27999999999999999999999887654
No 26
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.19 E-value=3.7e-11 Score=74.00 Aligned_cols=50 Identities=10% Similarity=0.205 Sum_probs=44.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 3 GSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 3 ~~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
+...+.||+|||++|..++++| +. +|.+||..| |||..+|++||+.|.++
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~-G~----kW~~IA~~l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKH-GN----DWATIGAAL-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHH-SS----CHHHHHHHH-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHH-CC----CHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999 42 599999999 99999999999987654
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.18 E-value=2.7e-11 Score=76.91 Aligned_cols=48 Identities=15% Similarity=0.291 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
..+.||.|||.+|..++.+| +. .+|..||..|||||..+|+.||..++
T Consensus 3 ~k~~WT~eED~~L~~~v~~~-g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKY-GP---KRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHH-CT---TCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHh-CC---CcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 45789999999999999999 53 46999999999999999999998754
No 28
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.17 E-value=3.5e-11 Score=78.98 Aligned_cols=50 Identities=16% Similarity=0.339 Sum_probs=44.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 3 GSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 3 ~~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
+...+.||.|||.+|..++.+| +. .+|..||..|||||..+|++||..++
T Consensus 24 ~~~k~~Wt~eED~~L~~~v~~~-g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 24 ELNKGPWTKEEDQRVIEHVQKY-GP---KRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHT-CS---CCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHH-CC---CCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 3456789999999999999999 53 46999999999999999999999754
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.15 E-value=4.7e-11 Score=76.48 Aligned_cols=46 Identities=17% Similarity=0.422 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
..||.|||.+|..++.+| +. .+|..||..|||||..||+.||...+
T Consensus 2 ~~Wt~eED~~L~~~v~~~-g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRY-GA---KDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHH-CS---SCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHH-CC---CCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 579999999999999999 53 47999999999999999999998754
No 30
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.13 E-value=1.4e-10 Score=70.47 Aligned_cols=44 Identities=23% Similarity=0.456 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHH-hCCCCCHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHS-LVPTKTIDEIKVHFK 53 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~-~vpgKS~~ev~~ry~ 53 (81)
....||.+|.++|+.+|++| ++ .|.+||. .||+||+.||.++|=
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~y-GK----df~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKY-GK----DFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHT-CS----CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHh-Cc----cHHHHHHHHcCCCCHHHHHHHHH
Confidence 45689999999999999999 66 3999999 699999999999995
No 31
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.12 E-value=5.8e-11 Score=80.23 Aligned_cols=49 Identities=24% Similarity=0.489 Sum_probs=44.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 3 GSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 3 ~~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
......||.+|+.+|..++.+| + .+|..||..|||||..+|++||+.|+
T Consensus 107 ~~~~~~WT~eEd~~L~~~~~~~-g----~~W~~Ia~~l~gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 107 EVKKTSWTEEEDRIIYQAHKRL-G----NRWAEIAKLLPGRTDNAIKNHWNSTM 155 (159)
T ss_dssp TSCCSCCCHHHHHHHHHHHHHH-C----SCHHHHHTTSTTCCHHHHHHHHHTTT
T ss_pred cccccCCChHHHHHHHHHHHHH-C----CCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999 5 37999999999999999999999775
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.12 E-value=1.1e-10 Score=76.71 Aligned_cols=48 Identities=17% Similarity=0.418 Sum_probs=43.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 4 SNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 4 ~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
.....||.|||.+|..++.+| +. +|..||..|||||..||+.||...+
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~-G~----~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQH-GS----DWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHH-TT----CHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHh-CC----CHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 345689999999999999999 42 6999999999999999999999865
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.10 E-value=7.7e-11 Score=77.80 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=46.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 040518 3 GSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLE 60 (81)
Q Consensus 3 ~~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~ 60 (81)
+...+.||.||+.+|..++.+| + .+|..||..|||||..+|++||..++..-.
T Consensus 51 ~~~~~~Wt~eEd~~L~~~~~~~-G----~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 51 AVVKHAWTPEEDETIFRNYLKL-G----SKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHS-C----SCHHHHTTTSTTCCHHHHHHHHHHTTGGGC
T ss_pred cccCCCCCHHHHHHHHHHHHHH-C----cCHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999 4 369999999999999999999998876543
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.03 E-value=9.4e-11 Score=77.39 Aligned_cols=46 Identities=13% Similarity=0.304 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
+.||.|||.+|..++.+| +. ..|..||..|||||..||+.||...+
T Consensus 3 g~Wt~eED~~L~~~v~~~-g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKEN-GP---QNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHH-CS---CCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh-Cc---CCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 579999999999999999 43 36999999999999999999998765
No 35
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.01 E-value=4.3e-10 Score=75.94 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 4 SNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 4 ~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
.....||.|||.+|..++.+| +. .+|..||..|||||..+|++||..++
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~-g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKY-GP---KRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH-CS---CCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred cCCCCCChHHHHHHHHHHHHh-Cc---ccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 456789999999999999999 43 47999999999999999999998754
No 36
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.00 E-value=6.8e-10 Score=81.28 Aligned_cols=48 Identities=17% Similarity=0.341 Sum_probs=42.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 4 SNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 4 ~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
.....||.+|+++|+.||++| ++ .|..||..|||||+.||++||....
T Consensus 131 k~s~~WTeEE~~lFleAl~kY-GK----DW~~IAk~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKY-GR----DFQAISDVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHH-SS----CHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHH-Cc----CHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345689999999999999999 54 5999999999999999999998543
No 37
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.96 E-value=1.7e-09 Score=67.92 Aligned_cols=61 Identities=23% Similarity=0.326 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCCchHHHHHHHh----CCCCCHHHHHHHHHHHHHHHh---hhhcCCCCCCCCc
Q 040518 8 QWSWEENKAFENGVALYYKEGQDEEWVKIHSL----VPTKTIDEIKVHFKKLMEDLE---LIEFGFEPVSIDY 73 (81)
Q Consensus 8 ~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~----vpgKS~~ev~~ry~~L~~dv~---~Ie~g~v~~P~~~ 73 (81)
.||.||+.+|..++.+| +. .+|..|+.. +||||..+|+.||+.++.--. .+..| -|+|.+.
T Consensus 2 ~WT~eEd~~L~~gv~k~-G~---g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~-~~~p~~~ 69 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHL-GT---GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG-EPVPQDL 69 (83)
T ss_dssp CCCHHHHHHHHHHHHHH-CS---SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCS-SCCCHHH
T ss_pred CCCHHHHHHHHHHHHHH-CC---CCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccC-CCCCHHH
Confidence 69999999999999999 54 379999996 999999999999999986322 13334 5777654
No 38
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.91 E-value=1.9e-09 Score=68.79 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
...||.+|..+|+.++.+| |+ .|.+||+.||+||+.||..+|=.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~-gK----~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQH-PK----NFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHS-TT----CHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc-CC----CHHHHHHHcCCCCHHHHHHHHhc
Confidence 4579999999999999999 75 59999999999999999999853
No 39
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.75 E-value=2.6e-08 Score=65.01 Aligned_cols=63 Identities=21% Similarity=0.315 Sum_probs=49.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhC----CCCCHHHHHHHHHHHHHHHh---hhhcCCCCCCCC
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLV----PTKTIDEIKVHFKKLMEDLE---LIEFGFEPVSID 72 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~v----pgKS~~ev~~ry~~L~~dv~---~Ie~g~v~~P~~ 72 (81)
....||.||+.+|..++.+| +. .+|..|+..+ ||||..+|+.||+.|+.--. .|..| -|+|.+
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~-G~---g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg-~~~P~~ 81 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKL-GT---GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRG-EPVPQE 81 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHH-CS---SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTC-CSCCCH
T ss_pred CCCCCCHHHHHHHHHHHHHh-CC---CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccC-CCCCHH
Confidence 45689999999999999999 54 3799999976 89999999999999994211 12334 577765
No 40
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.74 E-value=8.7e-09 Score=75.86 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCC--CchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 4 SNQKQWSWEENKAFENGVALYYKEG--QDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 4 ~s~~~WT~eE~k~fE~aL~~~~p~~--~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
.....||.|||.++..++.+| |.. +..-|..||.+|||||..+|++||+.++..
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~-Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKN-PTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTS-GGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHh-CcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 355689999999999999999 642 222399999999999999999999997765
No 41
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.73 E-value=3.1e-08 Score=59.61 Aligned_cols=49 Identities=18% Similarity=0.355 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHH---HhCCCCCHHHHHHHHHHHHH
Q 040518 4 SNQKQWSWEENKAFENGVALYYKEGQDEEWVKIH---SLVPTKTIDEIKVHFKKLME 57 (81)
Q Consensus 4 ~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA---~~vpgKS~~ev~~ry~~L~~ 57 (81)
.....||.||+..|...+.+| +. .|..|+ ..++|||..+++.+|+.|..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~-G~----~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTM-GN----HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHH-CS----CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHH-hH----hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 355689999999999999999 42 699999 57899999999999999874
No 42
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.68 E-value=3e-08 Score=66.19 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhC----CCCCHHHHHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLV----PTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~v----pgKS~~ev~~ry~~L~~d 58 (81)
....||.||+.+|..++.+| +. .+|..||..+ +|||..+|+.||+.|+.-
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~-G~---G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHL-GT---GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHH-GG---GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH-CC---CCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 44689999999999999999 43 4799999994 999999999999999974
No 43
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.64 E-value=6.5e-08 Score=64.62 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhC----CCCCHHHHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLV----PTKTIDEIKVHFKKLME 57 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~v----pgKS~~ev~~ry~~L~~ 57 (81)
....||.||+.+|..++.+| +. .+|..|+... +|||..+|+.||+.|+.
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~-G~---g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHL-GT---GRWRDVKFRAFENVHHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHH-SS---SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH-CC---CChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 34689999999999999999 54 3799999974 89999999999999985
No 44
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.59 E-value=5.2e-08 Score=73.31 Aligned_cols=59 Identities=20% Similarity=0.194 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHH----------hhhhcCCCCC
Q 040518 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDL----------ELIEFGFEPV 69 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv----------~~Ie~g~v~~ 69 (81)
+.||..|...|++|+.+| +. +.|+.||+.|+|||.+||+.+|+.+.+.+ ..||.|...+
T Consensus 111 ~~W~rrdf~~Fi~a~~ky-Gr---~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki 179 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKY-GR---DDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKI 179 (304)
T ss_dssp TTCCHHHHHHHHHHHHHH-CT---TCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHh-CH---HHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHH
Confidence 469999999999999999 54 46999999999999999999999999999 6677664433
No 45
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.49 E-value=1.7e-07 Score=74.25 Aligned_cols=45 Identities=18% Similarity=0.375 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
.+..||.+|..+|+.+|.+| ++ .|..||..|++||+.||+.||..
T Consensus 379 ~~~~WT~eE~~~f~~al~~y-Gk----dw~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKY-GR----DFQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHH-TT----CHHHHHHHHSSCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH-Cc----CHHHHHHHhCCCCHHHHHHHHHH
Confidence 46789999999999999999 54 59999999999999999999964
No 46
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.43 E-value=5.3e-07 Score=58.13 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 8 QWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 8 ~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
.||.|+|+.+..+-.+- .-+++.|..||..|.+||.+||.+||+.|+.-+..
T Consensus 35 lWTRe~DR~IL~~cQ~~--G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQ--GAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSCHHHHHHHHHHHHHT--TSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhc--CCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 69999999998887766 23678999999999889999999999999877654
No 47
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.36 E-value=1.2e-06 Score=56.18 Aligned_cols=52 Identities=13% Similarity=0.332 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhC-----CCCCHHHHHHHHHHHHHHHhhhh
Q 040518 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLV-----PTKTIDEIKVHFKKLMEDLELIE 63 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~v-----pgKS~~ev~~ry~~L~~dv~~Ie 63 (81)
..||.||...|-....+| + -||-.|+.+. ++||++++|+||-.++..+....
T Consensus 31 ~~WTkEETd~Lf~L~~~f-d----lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRF-D----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHT-T----TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh-C----CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999 5 3999999999 58999999999999998887654
No 48
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.63 E-value=8.4e-08 Score=58.94 Aligned_cols=50 Identities=12% Similarity=0.290 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 040518 8 QWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLE 60 (81)
Q Consensus 8 ~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~ 60 (81)
.||.|||+.+..+..+- ..+++.|..||..| +||++||.+||+.|+.-+.
T Consensus 16 lWTReeDR~IL~~cq~~--G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKR--GPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLFE 65 (70)
Confidence 59999999888887665 23578999999999 9999999999999987543
No 49
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.84 E-value=5.7e-05 Score=44.24 Aligned_cols=50 Identities=10% Similarity=0.163 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHhhccCC-----CchHHHHHHH-hCCCCCHHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEG-----QDEEWVKIHS-LVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~-----~~~RWekIA~-~vpgKS~~ev~~ry~~L~ 56 (81)
...+|.|||.+|...++.| ... ...-|..+|+ .+|++|-..++.||..-+
T Consensus 2 R~~FT~edD~~L~~~v~~~-~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKEN-ARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHT-CCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh-ccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999 322 4578999999 899999999999998754
No 50
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.80 E-value=4.1e-05 Score=52.95 Aligned_cols=54 Identities=17% Similarity=0.100 Sum_probs=43.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHh--CCCCCHHHHHHHHHHHHHH
Q 040518 3 GSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSL--VPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 3 ~~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~--vpgKS~~ev~~ry~~L~~d 58 (81)
--....||..|-+.|.+|+.+| + ...+||+.|++. +.+||.++|+..++.++.-
T Consensus 4 ~~~~~~~t~~E~r~fira~~kf-G-~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKF-G-GPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTC-S-SGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHH-C-CchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3456789999999999999999 3 345899999964 7899999999888877655
No 51
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.70 E-value=5e-06 Score=65.87 Aligned_cols=41 Identities=20% Similarity=0.547 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHH
Q 040518 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHF 52 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry 52 (81)
..||.+|.++|+.+|.+| ++ .|.+|+..||+||+.+|..+|
T Consensus 190 d~WT~eE~~lFe~al~~y-GK----dF~~I~~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFH-GK----TFHRIQQMLPDKSIASLVKFY 230 (482)
T ss_dssp ----------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHc-Cc----cHHHHHHHcCCCCHHHHHHHh
Confidence 479999999999999999 65 589999999999999998775
No 52
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.56 E-value=0.0003 Score=45.04 Aligned_cols=52 Identities=13% Similarity=0.331 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCC-----CCCHHHHHHHHHHHHHHHhhhh
Q 040518 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVP-----TKTIDEIKVHFKKLMEDLELIE 63 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vp-----gKS~~ev~~ry~~L~~dv~~Ie 63 (81)
..||.||-..|=....+| + -||-.|+.+.. +||++|+|+||-.++..+....
T Consensus 31 ~~WT~eETd~LfdLc~~f-d----lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRF-D----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHT-T----TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHc-C----CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 579999999888889999 5 39999999974 6999999999999998887753
No 53
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.40 E-value=0.00053 Score=41.82 Aligned_cols=60 Identities=12% Similarity=0.233 Sum_probs=48.0
Q ss_pred CCCCCHHHHHHHHHHHHhhc-----cCCCchHHHHHHHhCC----CCCHHHHHHHHHHHHHHHhhhhcC
Q 040518 6 QKQWSWEENKAFENGVALYY-----KEGQDEEWVKIHSLVP----TKTIDEIKVHFKKLMEDLELIEFG 65 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~-----p~~~~~RWekIA~~vp----gKS~~ev~~ry~~L~~dv~~Ie~g 65 (81)
...||.+|-++|..+....- +......|+.||..|- .+|+.||+.+++.|...-+.|...
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~ 72 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH 72 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 45799999999999976530 1224568999999964 599999999999999999887543
No 54
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=97.25 E-value=0.0017 Score=38.84 Aligned_cols=55 Identities=22% Similarity=0.235 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHh--CCCCCHHHHHHHHHHHHHHHhh
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSL--VPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~--vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
..-.||+|....|..|+.++ + ...-.+.+|... |+|.|..+|+.|.++..-.+++
T Consensus 6 ~r~~WT~elH~~Fv~Av~~L-G-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHL-G-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHH-C-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCcCCHHHHHHHHHHHHHh-C-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 34579999999999999999 5 222236677655 7799999999999988776665
No 55
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=96.95 E-value=0.0032 Score=46.26 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 040518 32 EWVKIHSLVPTKTIDEIKVHFKKLMEDL 59 (81)
Q Consensus 32 RWekIA~~vpgKS~~ev~~ry~~L~~dv 59 (81)
.|..||+..|++|...++.||+.++.+.
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 9999999999999999999999988775
No 56
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.78 E-value=0.0045 Score=46.46 Aligned_cols=58 Identities=10% Similarity=0.170 Sum_probs=48.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHH------------hCCCCCHHHHHHHHHHHHHHHhh
Q 040518 3 GSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHS------------LVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 3 ~~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~------------~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
+..+..||.+||+.|..+|.+| +-+.++-|++|-. .+-.||+.+|.+|.+.|+.-|..
T Consensus 209 ~~k~k~yteeEDRfLL~~l~k~-G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iek 278 (304)
T 1ofc_X 209 NNKGKNYTEIEDRFLVCMLHKL-GFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIER 278 (304)
T ss_dssp TCCCSSCCHHHHHHHHHHHHHH-CTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHHHHHh-cCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999 7777789999974 44469999999999999976644
No 57
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.96 E-value=0.009 Score=46.07 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCC-CCCHHHHHHHHHHHHHHHhh
Q 040518 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVP-TKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vp-gKS~~ev~~ry~~L~~dv~~ 61 (81)
+.||.-+=..|.+|+.+| +. +.-+.||+.|. |||.+||+..++.+.+-...
T Consensus 124 ~~WnrrDF~~FI~a~~ky-GR---~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~E 175 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKY-GR---NSIQAIARELAPGKTLEEVRAYAKAFWSNIER 175 (374)
T ss_dssp CCSCHHHHHHHHHHHHHH-CT---TCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSS
T ss_pred cccCHHHHHHHHHHHHHh-CH---hHHHHHHHHHccCCCHHHHHHHHHHHHHhhhh
Confidence 469999999999999999 54 46899999998 89999999888777654433
No 58
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.66 E-value=0.034 Score=40.97 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHH--hCCCCCHHHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHS--LVPTKTIDEIKVHFKKLME 57 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~--~vpgKS~~ev~~ry~~L~~ 57 (81)
...||..|...|.+++.+| + ...+||+.|++ .|+.|+...+++-|+.|++
T Consensus 3 ~~~ltekEiR~l~Ra~~kf-G-~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKF-G-NLKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHH-S-SCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh-C-CHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 3579999999999999999 3 34579999975 4778999988887776654
No 59
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.69 E-value=0.074 Score=40.97 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=47.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHh------------CCCCCHHHHHHHHHHHHHHHhh
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSL------------VPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~------------vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
.+..||.+||+.|..+|-+| +-+.++-|++|-.. +-.||+.++.+|...|+.-|..
T Consensus 227 k~k~yteeEDRfLL~~l~k~-G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeK 294 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKY-GLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEK 294 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHH-TTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCccCHHHHHHHHHHHHHh-ccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999 76667789999665 4469999999999999976654
No 60
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.83 E-value=1.7 Score=29.37 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCC------------CC--CHHHHHHHHHHHHHHHh
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVP------------TK--TIDEIKVHFKKLMEDLE 60 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vp------------gK--S~~ev~~ry~~L~~dv~ 60 (81)
+..||.+||+.|..++.+| +-| +|+.|-.-.- .| +...+.+|...|+.-+.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~-G~g---~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l~ 198 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEY-GYG---SWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLS 198 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHH-CTT---CHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHH-CcC---cHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHHH
Confidence 4579999999999999999 543 5999987321 33 35689999888877554
No 61
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=88.77 E-value=2.6 Score=25.34 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=43.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 2 SGSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 2 ~~~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
+|++....|.++...||.+.... +--+...=+.||..+ |-|..+|+.=|++--
T Consensus 3 ~g~~r~kfT~~Ql~~Le~~F~~~-~YPs~~er~~LA~~t-gLte~qIkvWFqNrR 55 (76)
T 2ecc_A 3 SGSSGKRKTKEQLAILKSFFLQC-QWARREDYQKLEQIT-GLPRPEIIQWFGDTR 55 (76)
T ss_dssp CSCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT-CCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHH-CcCHHHhhHHhHhhH
Confidence 56777889999999999998776 555667778899999 999999986665443
No 62
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=86.80 E-value=3 Score=23.89 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=44.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh-hccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 1 MSGSNQKQWSWEENKAFENGVAL-YYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 1 ~~~~s~~~WT~eE~k~fE~aL~~-~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
|++......|.++...||.+... - +--+...=..||..+ |-|..+|+.=|++=-...+.
T Consensus 1 ~~~k~Rt~ft~~Q~~~Le~~F~~~~-~yp~~~~r~~LA~~~-~l~~~qV~~WFqNRR~k~rk 60 (73)
T 2hi3_A 1 MSAQTVSGPTEDQVEILEYNFNKVN-KHPDPTTLCLIAAEA-GLTEEQTQKWFKQRLAEWRR 60 (73)
T ss_dssp CCCSCCSSCCHHHHHHHHHHHHHTT-SSCCHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 67888899999999999999764 3 333445557899999 89999998666554443333
No 63
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=83.64 E-value=2.2 Score=27.33 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=34.9
Q ss_pred hHHHHHHHhCCCCC----HHHHHHHHHHHHHHHhhh-hcCCCCCCCCcc
Q 040518 31 EEWVKIHSLVPTKT----IDEIKVHFKKLMEDLELI-EFGFEPVSIDYH 74 (81)
Q Consensus 31 ~RWekIA~~vpgKS----~~ev~~ry~~L~~dv~~I-e~g~v~~P~~~~ 74 (81)
..|..||..+.--+ ...++.+|..++...... +.|..|.|.-.+
T Consensus 73 ~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~g~~~p~~i~~ 121 (125)
T 2cxy_A 73 KKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFS 121 (125)
T ss_dssp TCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHHHHHCCCCCCSCC-
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCCChhHhc
Confidence 48999999995433 468899999999988885 899998887543
No 64
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.63 E-value=8.2 Score=22.95 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 040518 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLE 60 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~ 60 (81)
-.||.++...+...+ . ..+-++.+. .-++-|..+|++.|+.|.....
T Consensus 10 ~~~s~~~~~~~~~~~----~--~~~~y~iLg-v~~~as~~eIk~aYr~la~~~H 56 (90)
T 2ys8_A 10 ASFTKEQADAIRRIR----N--SKDSWDMLG-VKPGASRDEVNKAYRKLAVLLH 56 (90)
T ss_dssp CCCCHHHHHHHHHHH----T--CSSHHHHHT-CCTTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHh----c--CCCHHHHcC-cCCCCCHHHHHHHHHHHHHHHC
Confidence 469999988887654 2 234455444 4456899999999999986553
No 65
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=74.97 E-value=6.8 Score=24.96 Aligned_cols=35 Identities=20% Similarity=0.445 Sum_probs=28.1
Q ss_pred hHHHHHHHhCCCCC----HHHHHHHHHHHHHHHhhhhcC
Q 040518 31 EEWVKIHSLVPTKT----IDEIKVHFKKLMEDLELIEFG 65 (81)
Q Consensus 31 ~RWekIA~~vpgKS----~~ev~~ry~~L~~dv~~Ie~g 65 (81)
..|..||..+.-.+ ...++.+|..++.......+|
T Consensus 64 k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~~~ 102 (122)
T 2eqy_A 64 RKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFLSG 102 (122)
T ss_dssp TTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHHHC
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhc
Confidence 58999999994432 468999999999988887665
No 66
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=73.53 E-value=6.8 Score=24.05 Aligned_cols=35 Identities=17% Similarity=0.500 Sum_probs=28.0
Q ss_pred hHHHHHHHhCCCCC----HHHHHHHHHHHHHHHhhhhcC
Q 040518 31 EEWVKIHSLVPTKT----IDEIKVHFKKLMEDLELIEFG 65 (81)
Q Consensus 31 ~RWekIA~~vpgKS----~~ev~~ry~~L~~dv~~Ie~g 65 (81)
..|..||..+.--+ ...++.+|..++.......+|
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~~~~~ 104 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVYTSG 104 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhc
Confidence 47999999994433 478999999999888876665
No 67
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=72.44 E-value=1.9 Score=26.15 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=26.8
Q ss_pred hHHHHHHHhCCCCC----HHHHHHHHHHHHHHHhhhhcC
Q 040518 31 EEWVKIHSLVPTKT----IDEIKVHFKKLMEDLELIEFG 65 (81)
Q Consensus 31 ~RWekIA~~vpgKS----~~ev~~ry~~L~~dv~~Ie~g 65 (81)
..|..||..+.--+ ...++.+|..++.......+|
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE~~~~g 96 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYELFQSG 96 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHHHHHCC
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 57999999984322 568999999888877766555
No 68
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.77 E-value=12 Score=21.44 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
.....|.++...||.+.... +--+...=+.||..+ |-|..+|+.=|+.=-...+.
T Consensus 11 ~R~~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~-~l~~~qV~~WFqNrR~k~kk 65 (76)
T 2dn0_A 11 YKNKKSHEQLSALKGSFCRN-QFPGQSEVEHLTKVT-GLSTREVRKWFSDRRYHCRN 65 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHS-SSCCSHHHHHHHHHH-CCCHHHHHHHHHHHHHHSSS
T ss_pred CCccCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh-CCChHHhhHHhHHHhHHHHH
Confidence 35679999999999997666 544555568899999 89999998777665444443
No 69
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=70.89 E-value=11 Score=20.55 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
+....|.++...||...... +--+...=+.||..+ |-|..+|+.=|+.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~WFqN 49 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRT-HYPDVFTREELAMKI-GLTEARIQVWFQN 49 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHH-CcCHHHHHHHhhh
Confidence 45678999999999997665 444455557899999 8999999876654
No 70
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=69.69 E-value=16 Score=22.16 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh----------hhcCCCCCC
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL----------IEFGFEPVS 70 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~----------Ie~g~v~~P 70 (81)
...=|+.|..+|.-.+.-+ .-..||..+ |-|..-|+.|...+.+.+.. ++.|.++.|
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~-------s~~EIA~~L-~iS~~TV~~~l~ri~~KLgv~~r~elv~~a~~~gli~~~ 98 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF-------LVTEIAKKL-NRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSMTPVD 98 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC-------CHHHHHHHH-TSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTCSSCC
T ss_pred cCCCCHHHHHHHHHHHcCC-------CHHHHHHHH-CcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCC
Confidence 3456888988886643222 248999999 89999999888877665432 456666554
No 71
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=69.62 E-value=5.2 Score=29.23 Aligned_cols=29 Identities=31% Similarity=0.656 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHS 38 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~ 38 (81)
+..|+.+||..|...+-+| +-| .|+.|-.
T Consensus 168 ~c~W~~~dD~~LLvGIyky-GyG---~We~Ir~ 196 (270)
T 2xb0_X 168 SSNWTKEEDEKLLIGVFKY-GYG---SWTQIRD 196 (270)
T ss_dssp SSCCCHHHHHHHHHHHHHH-CTT---CHHHHHH
T ss_pred CCCcChHHHHHHHHHHHHH-cCC---cHHHHhc
Confidence 3569999999999999999 554 4999975
No 72
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=69.38 E-value=10 Score=22.06 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 11 WEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 11 ~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
.+.+..+..+|..- +.+.+-.=..||..+ |.|...|.+|-..|.++
T Consensus 13 ~~~~~~IL~~L~~~-~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 13 QDQEQRILKFLEEL-GEGKATTAHDLSGKL-GTPKKEINRVLYSLAKK 58 (77)
T ss_dssp HHHHHHHHHHHHHH-CSSSCEEHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 44445555788888 644445568999999 89999999998888653
No 73
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=66.55 E-value=4.4 Score=26.66 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=31.5
Q ss_pred hHHHHHHHhCCCCC-----HHHHHHHHHHHHHHHhhhhcCCCCC
Q 040518 31 EEWVKIHSLVPTKT-----IDEIKVHFKKLMEDLELIEFGFEPV 69 (81)
Q Consensus 31 ~RWekIA~~vpgKS-----~~ev~~ry~~L~~dv~~Ie~g~v~~ 69 (81)
..|..||..+.--+ ...++.+|..++.......+|..+.
T Consensus 86 ~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p 129 (145)
T 2kk0_A 86 KLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNP 129 (145)
T ss_dssp TCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 57999999994322 5689999999999999998886553
No 74
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=66.12 E-value=11 Score=23.14 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=36.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCC------------chHHHHHHHhC-----CCCCHHHHHHHHHHHHHHH
Q 040518 4 SNQKQWSWEENKAFENGVALYYKEGQ------------DEEWVKIHSLV-----PTKTIDEIKVHFKKLMEDL 59 (81)
Q Consensus 4 ~s~~~WT~eE~k~fE~aL~~~~p~~~------------~~RWekIA~~v-----pgKS~~ev~~ry~~L~~dv 59 (81)
.....|+++=..+|..||+.| |+.. ..|=+-||..+ .-||.+||-.|-+.|..-.
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~y-p~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~ 75 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIY-PPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 75 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHS-CSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHc-CCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence 456789999999999999999 6432 11222233222 2378888888888776543
No 75
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=65.16 E-value=10 Score=24.27 Aligned_cols=33 Identities=6% Similarity=0.255 Sum_probs=27.9
Q ss_pred chHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Q 040518 30 DEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELI 62 (81)
Q Consensus 30 ~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~I 62 (81)
...|..||..+.--+...++.+|..++.....-
T Consensus 69 ~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~~ 101 (123)
T 1kkx_A 69 TQQWSMVAQRLQISDYQQLESIYFRILLPYERH 101 (123)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHCCChHHHHHHHHHHHHHHHHHH
Confidence 379999999996666889999999998877663
No 76
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=65.15 E-value=13 Score=22.08 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 14 NKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 14 ~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
+..+..+|... +.|..-.=..||..| |-|...|.++-..|.++
T Consensus 12 ~~~IL~~L~~~-~pg~~~t~~eLA~~L-gvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 12 EQRILKFLEEL-GEGKATTAHDLSGKL-GTPKKEINRVLYSLAKK 54 (81)
T ss_dssp HHHHHHHHHHH-CTTCCBCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 44455778888 655555678999999 89999999998888754
No 77
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.04 E-value=16 Score=20.41 Aligned_cols=48 Identities=19% Similarity=0.121 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKL 55 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L 55 (81)
....|.++...||...... +--+...=+.||..+ |-|..+|+.=|+.=
T Consensus 11 Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~~WFqNr 58 (70)
T 2dmu_A 11 RTIFTDEQLEALENLFQET-KYPDVGTREQLARKV-HLREEKVEVWFKNR 58 (70)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH-CCCHHHeehccccc
Confidence 3469999999999998776 555566678899999 89999998766543
No 78
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=64.17 E-value=14 Score=19.74 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Q 040518 8 QWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELI 62 (81)
Q Consensus 8 ~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~I 62 (81)
..++.+..+|..-. + .+ -.+..||..+ |.|..-|+.+.......++..
T Consensus 15 ~L~~~~r~il~l~~--~--~g--~s~~eIA~~l-gis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQ--L--LG--LSYADAAAVC-GCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHH--T--SC--CCHHHHHHHH-TSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHH--H--cC--CCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHH
Confidence 46677777766432 1 22 3588999999 899999998888877777653
No 79
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=64.12 E-value=15 Score=19.68 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
....|.++...||.....- +--+...=..||..+ |-|..+|+.=|++
T Consensus 4 Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~WFqN 50 (58)
T 1ig7_A 4 RTPFTTAQLLALERKFRQK-QYLSIAERAEFSSSL-SLTETQVKIWFQN 50 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHH-CcCHHHhhhhhhH
Confidence 4568999999999997766 544556668999999 8999999876654
No 80
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=64.02 E-value=17 Score=20.43 Aligned_cols=59 Identities=14% Similarity=0.036 Sum_probs=43.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhh
Q 040518 3 GSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIE 63 (81)
Q Consensus 3 ~~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~Ie 63 (81)
..+....|.++...||.....- +--+...=+.||..+ |-|..+|+.=|+.--...+..+
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLKN-QFPHDSEIIRLMKIT-GLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCcCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh-CcCHHHeeeCChhHhHHHHhhC
Confidence 4466789999999999997654 333444456889888 8999999988877665555543
No 81
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=62.74 E-value=18 Score=20.15 Aligned_cols=48 Identities=8% Similarity=0.097 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKL 55 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L 55 (81)
....|.++...||.....- +--+...=+.||..+ |-|..+|+.=|++=
T Consensus 11 Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~~WFqNr 58 (70)
T 2da1_A 11 RTRITDDQLRVLRQYFDIN-NSPSEEQIKEMADKS-GLPQKVIKHWFRNT 58 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHh-CCCHHHHHHHhhhh
Confidence 3568999999999997665 444555678899999 89999998766553
No 82
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=62.53 E-value=17 Score=19.76 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
.....|.++...||.....- +--+...=..||..+ |-|..+|+.=|++
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~WFqN 53 (61)
T 2hdd_A 6 PRTAFSSEQLARLKREFNEN-RYLTERRRQQLSSEL-GLNEAQIKIWFKN 53 (61)
T ss_dssp -CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH-CcCHHHHHHHhhh
Confidence 45678999999999997766 544566678899999 8999999866553
No 83
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=61.78 E-value=17 Score=19.65 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
.....|.++...||.....- +--+...=..||..+ |-|..+|+.=|+.
T Consensus 4 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~WFqN 51 (60)
T 1jgg_A 4 YRTAFTRDQLGRLEKEFYKE-NYVSRPRRCELAAQL-NLPESTIKVWFQN 51 (60)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHH-CcCHHHHHHhhHH
Confidence 34678999999999997766 544556668899999 8999999866654
No 84
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.17 E-value=21 Score=20.50 Aligned_cols=47 Identities=6% Similarity=0.026 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHH
Q 040518 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKL 55 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L 55 (81)
...|.++...||...... +--+...=+.||..+ |-|..+|+.=|++=
T Consensus 22 t~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~L~~~qV~vWFqNR 68 (80)
T 2dmt_A 22 TVFTELQLMGLEKRFEKQ-KYLSTPDRIDLAESL-GLSQLQVKTWYQNR 68 (80)
T ss_dssp CCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh-CCCHHHeeeccHHH
Confidence 458999999999997766 544556668899999 89999998766654
No 85
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=60.86 E-value=19 Score=19.85 Aligned_cols=48 Identities=8% Similarity=0.006 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
.....|.++...||.+.... +--+...=+.||..+ |-|..+|+.=|+.
T Consensus 6 ~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~WFqN 53 (66)
T 1bw5_A 6 VRTVLNEKQLHTLRTCYAAN-PRPDALMKEQLVEMT-GLSPRVIRVWFQN 53 (66)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHH-CcCHHHHHHHhHH
Confidence 45678999999999998776 554556668899998 8999999866654
No 86
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=60.85 E-value=18 Score=19.54 Aligned_cols=47 Identities=13% Similarity=0.022 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
....|.++...||...... +--+...=+.||..+ |-|..+|..=|+.
T Consensus 9 Rt~ft~~q~~~Le~~f~~~-~yp~~~~r~~La~~~-~l~~~qV~~WFqN 55 (61)
T 1akh_A 9 KSSISPQARAFLEEVFRRK-QSLNSKEKEEVAKKC-GITPLQVRVWFIN 55 (61)
T ss_dssp ---CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhC-CCcCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 4568999999999998777 655666678899999 8999999876653
No 87
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=60.09 E-value=22 Score=20.37 Aligned_cols=54 Identities=9% Similarity=0.009 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
...+|.++...||.....- +--+...=+.||..+ |-|..+|+.=|+.--...+.
T Consensus 11 Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~WFqNRR~k~rk 64 (80)
T 2dms_A 11 RTTFTRAQLDVLEALFAKT-RYPDIFMREEVALKI-NLPESRVQVWFKNRRAKCRQ 64 (80)
T ss_dssp CSSCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT-TCCHHHHHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH-CcCHHHhhhhhHHHhHHhhH
Confidence 3569999999999997766 544556678899999 89999998777655444443
No 88
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=59.82 E-value=18 Score=20.50 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHH
Q 040518 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKL 55 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L 55 (81)
...|.++...||...... +.-+...=+.||..+ |-|..+|+.=|++-
T Consensus 22 t~ft~~Ql~~Le~~f~~~-~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 68 (80)
T 2da3_A 22 TTITPEQLEILYQKYLLD-SNPTRKMLDHIAHEV-GLKKRVVQVWFQNT 68 (80)
T ss_dssp SSCCTTTHHHHHHHHHHC-SSCCHHHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH-CcCHHHhHHHhHHH
Confidence 358999999999987665 444555668899999 89999998766553
No 89
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=59.44 E-value=21 Score=19.93 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKL 55 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L 55 (81)
....|.++...||.....- +--+...=+.||..+ |-|..+|+.=|++=
T Consensus 11 Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~~WFqNR 58 (70)
T 2cra_A 11 RIPYSKGQLRELEREYAAN-KFITKDKRRKISAAT-SLSERQITIWFQNR 58 (70)
T ss_dssp CCCSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT-CCCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH-CCCHHHhhHhhHhH
Confidence 3469999999999997666 544556668899999 89999998776653
No 90
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=59.34 E-value=21 Score=20.00 Aligned_cols=56 Identities=11% Similarity=0.092 Sum_probs=40.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-hccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 040518 3 GSNQKQWSWEENKAFENGVAL-YYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLE 60 (81)
Q Consensus 3 ~~s~~~WT~eE~k~fE~aL~~-~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~ 60 (81)
+.+....|.++...||..... - +--+...=..||..+ |-|..+|+.=|+.=-...+
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~-~yp~~~~r~~LA~~l-~l~~~qV~~WFqNRR~k~r 58 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVN-KHPDPTTLCLIAAEA-GLTEEQTQKWFKQRLAEWR 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccC-CCCCHHHHHHHHHHH-CcCHHHhhHHhHHHHHHHh
Confidence 346678999999999999864 3 323445557899999 8999999866655443333
No 91
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.10 E-value=30 Score=21.69 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCC--------------------CCCHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVP--------------------TKTIDEIKVHFKK 54 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vp--------------------gKS~~ev~~ry~~ 54 (81)
...||..+..+||.+...- +--+...-+.||..+- +-|...|+.=|+.
T Consensus 10 Rt~ft~~ql~~Le~~F~~~-~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqN 77 (102)
T 2da6_A 10 RFKWGPASQQILYQAYDRQ-KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFAN 77 (102)
T ss_dssp CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecc
Confidence 4579999999999997665 5445678889999981 5777788765544
No 92
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=59.05 E-value=21 Score=19.82 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKL 55 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L 55 (81)
....|.++...||.....- +--+...=+.||..+ |-|..+|+.=|+.=
T Consensus 11 Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~~WFqNr 58 (70)
T 2da2_A 11 RTRFTDYQLRVLQDFFDAN-AYPKDDEFEQLSNLL-NLPTRVIVVWFQNA 58 (70)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHS-CCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHh-CCCHHHhHHhhHhh
Confidence 3568999999999998766 545566678899999 89999998766543
No 93
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=58.99 E-value=4.8 Score=25.91 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhccCCCchH----HHHHHHhCCCCCHHHHHHHHH
Q 040518 12 EENKAFENGVALYYKEGQDEE----WVKIHSLVPTKTIDEIKVHFK 53 (81)
Q Consensus 12 eE~k~fE~aL~~~~p~~~~~R----WekIA~~vpgKS~~ev~~ry~ 53 (81)
++..+|+-.+|..+ -+...- =..||..+-|||++|+++.|+
T Consensus 90 d~~~l~eLi~AAny-L~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~ 134 (141)
T 1fs1_B 90 DQGTLFELILAANY-LDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 134 (141)
T ss_dssp CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC
T ss_pred CHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 35567777665541 121111 257999999999999998875
No 94
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=58.90 E-value=17 Score=23.24 Aligned_cols=40 Identities=10% Similarity=-0.003 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 14 NKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 14 ~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
+..+..+|..- .+-.+..||+.+ |-|...|.+|.+.|.+.
T Consensus 5 d~~il~~L~~~----~~~s~~~la~~l-g~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 5 DRKILRILQED----STLAVADLAKKV-GLSTTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHHHHHTTC----SCSCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC----CCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 44555666444 334699999999 99999999999998754
No 95
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.88 E-value=23 Score=20.19 Aligned_cols=47 Identities=9% Similarity=0.183 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
....|.++...||...... +.-+...=+.||..+ |-|..+|+.=|+.
T Consensus 11 Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~WFqN 57 (80)
T 2dmq_A 11 RTSFKHHQLRTMKSYFAIN-HNPDAKDLKQLAQKT-GLTKRVLQVWFQN 57 (80)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT-CCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh-CCCHHHhhHccHH
Confidence 3468999999999997766 555666678999999 8999999855543
No 96
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=58.84 E-value=6.9 Score=24.72 Aligned_cols=35 Identities=11% Similarity=0.396 Sum_probs=27.9
Q ss_pred hHHHHHHHhCCCCC----HHHHHHHHHHHHHHHhhhhcC
Q 040518 31 EEWVKIHSLVPTKT----IDEIKVHFKKLMEDLELIEFG 65 (81)
Q Consensus 31 ~RWekIA~~vpgKS----~~ev~~ry~~L~~dv~~Ie~g 65 (81)
..|..||..+.--+ ...++.+|..++........|
T Consensus 62 ~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~~~~~ 100 (117)
T 2jrz_A 62 RRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSG 100 (117)
T ss_dssp TTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999994432 568999999998888777665
No 97
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=57.71 E-value=20 Score=19.24 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
....|+.|..+|.. + + .|. .-..||..+ |-|..-|..|...+.+.+..
T Consensus 9 ~~~L~~~e~~il~~-~--~--~g~--s~~eIA~~l-~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFEL-L--V--QDK--TTKEIASEL-FISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHH-H--T--TTC--CHHHHHHHH-TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHH-H--H--cCC--CHHHHHHHH-CCCHHHHHHHHHHHHHHHCC
Confidence 45688999988877 3 2 222 357899999 89999999999888877654
No 98
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=57.66 E-value=22 Score=19.61 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDL 59 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv 59 (81)
.....|.++...||.....- +--+...=+.||..+ |-|..+|+.=|+.--...
T Consensus 4 ~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~ 56 (67)
T 2k40_A 4 PRTAFTQNQIEVLENVFRVN-CYPGIDILEDLAQKL-NLELDRIQIWFQNRRAKL 56 (67)
T ss_dssp CSCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH-CcCHHHhhHhhHhHHHHH
Confidence 45678999999999998766 544566678999999 899999987776544333
No 99
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=57.12 E-value=5.7 Score=26.10 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHhhccCCCchH----HHHHHHhCCCCCHHHHHHHHH
Q 040518 10 SWEENKAFENGVALYYKEGQDEE----WVKIHSLVPTKTIDEIKVHFK 53 (81)
Q Consensus 10 T~eE~k~fE~aL~~~~p~~~~~R----WekIA~~vpgKS~~ev~~ry~ 53 (81)
.-++..+|+-.+|..+ -+...- =..||..+-|||+++|++.|+
T Consensus 92 ~vd~~~l~eLi~AAny-L~I~~Lldl~c~~vA~~ikgkt~eeir~~f~ 138 (160)
T 2p1m_A 92 KIDQATLFELILAANY-LNIKNLLDLTCQTVADMIKGKTPEEIRTTFN 138 (160)
T ss_dssp ---------CHHHHHH-TTCHHHHHHHHHHHHHTTTTCCHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 4556667777766551 222111 257999999999999998875
No 100
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=56.99 E-value=23 Score=19.67 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKL 55 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L 55 (81)
.....|.++...||.....- +--+...=..||..+ |-|..+|+.=|++=
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~WFqNR 53 (68)
T 1zq3_P 5 TRTTFTSSQIAELEQHFLQG-RYLTAPRLADLSAKL-ALGTAQVKIWFKNR 53 (68)
T ss_dssp CSCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh-CcCHHHhhHhhHHH
Confidence 45678999999999997666 544566678999999 89999998666543
No 101
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=56.73 E-value=26 Score=20.11 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
....|.++...||...... +--+...=..||..+ |-|..+|+.=|+.
T Consensus 22 Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~~WFqN 68 (81)
T 1fjl_A 22 RTTFSASQLDELERAFERT-QYPDIYTREELAQRT-NLTEARIQVWFQN 68 (81)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 4568999999999997766 544556668899999 8999999866654
No 102
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=55.71 E-value=24 Score=19.53 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
.....|.++...||.....- +--+...=..||..+ |-|..+|+.=|++=-
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR 55 (68)
T 1yz8_P 6 QRTHFTSQQLQQLEATFQRN-RYPDMSTREEIAVWT-NLTEARVRVWFKNRR 55 (68)
T ss_dssp SCCCCCHHHHHHHHHHHTTC-SSCCTTTTTHHHHHT-TSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH-CcCHHHHHHHHHHHh
Confidence 44678999999999997665 444445567899999 899999986665443
No 103
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=55.25 E-value=24 Score=19.31 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 9 WSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 9 WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
.|+.|..+|.- + + .|. .-..||..+ |.|..-|+.|.......+..
T Consensus 17 L~~~e~~vl~l-~--~--~g~--s~~eIA~~l-~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSA-V--V--AGL--PNKSIAYDL-DISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHH-H--T--TTC--CHHHHHHHT-TSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHH-H--H--cCC--CHHHHHHHH-CcCHHHHHHHHHHHHHHHcC
Confidence 45666666655 2 2 232 356899999 89999999988887776653
No 104
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=54.49 E-value=28 Score=19.92 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFK 53 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~ 53 (81)
....|.++...||.....- +--+...=..||..+ |-|..+|+.=|+
T Consensus 11 Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~vWFq 56 (80)
T 2cue_A 11 RTSFTQEQIEALEKEFERT-HYPDVFARERLAAKI-DLPEARIQVWFS 56 (80)
T ss_dssp CCCSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh-CCCHHHhhHHHH
Confidence 3569999999999997665 444556668899999 899999975554
No 105
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=54.44 E-value=6.7 Score=26.16 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhccCCCch----HHHHHHHhCCCCCHHHHHHHHH
Q 040518 11 WEENKAFENGVALYYKEGQDE----EWVKIHSLVPTKTIDEIKVHFK 53 (81)
Q Consensus 11 ~eE~k~fE~aL~~~~p~~~~~----RWekIA~~vpgKS~~ev~~ry~ 53 (81)
-+...+|+-.+|.. --+... -=..||..+-|||++|+++.|.
T Consensus 101 vd~~~LfeLi~AAn-yLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~ 146 (169)
T 3v7d_A 101 VDQEMLYEIILAAN-YLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFN 146 (169)
T ss_dssp SCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 35677888888776 233222 2367899999999999999886
No 106
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.14 E-value=28 Score=19.45 Aligned_cols=50 Identities=26% Similarity=0.194 Sum_probs=36.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 3 GSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 3 ~~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
++++..=+.++...||.....- +.-+...=..||..+ |-|..+|+.=|++
T Consensus 4 g~~~~~p~~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l-~L~e~qVqvWFqN 53 (64)
T 2e19_A 4 GSSGQPPLKNLLSLLKAYYALN-AQPSAEELSKIADSV-NLPLDVVKKWFEK 53 (64)
T ss_dssp SCSCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh-CcChhhcCcchhc
Confidence 4444567888889999887655 433445557899999 8999999876654
No 107
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=53.14 E-value=26 Score=19.10 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
.....|.++...||.....- +--+...=..||..+ |-|..+|+.=|+.
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~~WFqN 53 (63)
T 2h1k_A 6 TRTAYTRAQLLELEKEFLFN-KYISRPRRVELAVML-NLTERHIKIWFQN 53 (63)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh-CcCHHHhhHHHHh
Confidence 45678999999999997665 444555668899999 8999999866654
No 108
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.74 E-value=28 Score=19.36 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKL 55 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L 55 (81)
....|.++...||.+.... +--+...=+.||..+ |-|..+|+.=|+.-
T Consensus 11 Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 58 (70)
T 2djn_A 11 RTIYSSFQLAALQRRFQKT-QYLALPERAELAASL-GLTQTQVKIWFQNK 58 (70)
T ss_dssp SCSSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 3468999999999997666 544555568899999 89999998776543
No 109
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=52.55 E-value=26 Score=18.84 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHh---hccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 7 KQWSWEENKAFENGVAL---YYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~---~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
...|.++...||..... . |--+...=+.||..+ |-|..+|..=|+.
T Consensus 3 ~~ft~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~-gl~~~qV~~WFqN 51 (60)
T 1k61_A 3 HRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT-SLSRIQIKNWVSN 51 (60)
T ss_dssp CSCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCC-CCcCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 46899999999999877 4 444555567899999 8999999876654
No 110
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=52.22 E-value=29 Score=19.32 Aligned_cols=47 Identities=13% Similarity=0.163 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHH
Q 040518 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKL 55 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L 55 (81)
...|.++...||...... +--+...=+.||..+ |-|..+|+.=|+.=
T Consensus 12 ~~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 58 (70)
T 2e1o_A 12 VRFSNDQTIELEKKFETQ-KYLSPPERKRLAKML-QLSERQVKTWFQNR 58 (70)
T ss_dssp CCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHH-CCCHHHhhHhhHhh
Confidence 469999999999998766 544556668899999 89999998766543
No 111
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=51.56 E-value=31 Score=19.46 Aligned_cols=52 Identities=12% Similarity=0.106 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
.....|.++...||...... +--+...=..||..+ |-|..+|+.=|+.=-..
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~vWFqNRR~k 61 (73)
T 2l7z_A 10 KRVPYTKVQLKELEREYATN-KFITKDKRRRISATT-NLSERQVTIWFQNRRVK 61 (73)
T ss_dssp CCCCSCHHHHHHHHHHHHHT-SCCCHHHHHHHHHHH-TSCSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhC-CCcCHHHHHHHHHHH-CCCHHHHHHHHHHHhHH
Confidence 34568999999999997766 544556668899999 89999998766654433
No 112
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=51.14 E-value=28 Score=18.91 Aligned_cols=48 Identities=6% Similarity=0.050 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHHHH---HhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGV---ALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL---~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
.....|.++...||..+ ... |--+...=+.||..+ |-|..+|..=|+.
T Consensus 6 ~R~~ft~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~-~L~~~qV~~WFqN 56 (64)
T 1du6_A 6 EGRHMNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC-GITVSQVSNWFGN 56 (64)
T ss_dssp CCCSSTTTHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 44568999999999998 333 333555668899999 8999999876653
No 113
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=51.03 E-value=31 Score=20.71 Aligned_cols=30 Identities=13% Similarity=0.317 Sum_probs=22.5
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Q 040518 32 EWVKIHSLVPTKTIDEIKVHFKKLMEDLELI 62 (81)
Q Consensus 32 RWekIA~~vpgKS~~ev~~ry~~L~~dv~~I 62 (81)
....||..+ |.|..-|+.+.......++..
T Consensus 126 s~~EIA~~l-gis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 126 SYREIATIL-SKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp CHHHHHHHH-TCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-CCCHHHHHHHHHHHHHHHHHH
Confidence 467888888 788888888877766666543
No 114
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.62 E-value=38 Score=20.20 Aligned_cols=45 Identities=18% Similarity=0.131 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 040518 11 WEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLME 57 (81)
Q Consensus 11 ~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~ 57 (81)
.++..+|+...++- +.-+.+.-.+||..| |-+.+-|+.=|.+-..
T Consensus 14 k~ql~~Lk~yF~~n-~~Ps~eei~~LA~~l-gL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMN-MEPNSDELLKISIAV-GLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHh-CCCHHHHHHHHhhccc
Confidence 35566888888888 777889999999999 8999998887777553
No 115
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=50.56 E-value=26 Score=19.96 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 8 QWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 8 ~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
..|..|.++|... + .|. .-..||..+ |.|..-|+.|...+.+.+..
T Consensus 21 ~Lt~~e~~vl~l~---~--~g~--s~~eIA~~l-~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 21 QLTPRERDILKLI---A--QGL--PNKMIARRL-DITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GSCHHHHHHHHHH---T--TTC--CHHHHHHHH-TSCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHH---H--cCC--CHHHHHHHH-CcCHHHHHHHHHHHHHHHcC
Confidence 4678888887763 2 222 367999999 89999999998888777653
No 116
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=50.41 E-value=31 Score=19.17 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=38.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 3 GSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 3 ~~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
-......|.++...||.....- +--+...=..||..+ |-|..+|+.=|++=-
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~vWFqNRR 54 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHFN-RYLTRRRRIEIAHAL-SLTERQIKIWFQNRR 54 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHccC-CCCCHHHHHHHHHHH-CcCHhhhhHHhHHHH
Confidence 3456779999999999997655 433445567899999 899999986665443
No 117
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=50.39 E-value=36 Score=19.91 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 8 QWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 8 ~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
..|..|..+|.-.+. |. .-..||..+ |.|..-|+.|...+...+..
T Consensus 27 ~Lt~~e~~vl~l~~~-----g~--s~~eIA~~l-~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLLSE-----GL--TNKQIADRM-FLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHHHT-----TC--CHHHHHHHH-TCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHc-----CC--CHHHHHHHH-CcCHHHHHHHHHHHHHHHcC
Confidence 467777777776422 22 347899999 89999999999888887764
No 118
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=50.36 E-value=34 Score=20.12 Aligned_cols=46 Identities=9% Similarity=0.059 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 040518 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLE 60 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~ 60 (81)
..=|..|..+|.-...-+ .-..||..+ |-|..-|+.|...+...+.
T Consensus 28 ~~Lt~rE~~Vl~l~~~G~-------s~~eIA~~L-~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 28 DVLTPRECLILQEVEKGF-------TNQEIADAL-HLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp -CCCHHHHHHHHHHHTTC-------CHHHHHHHH-TCCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHcCC-------CHHHHHHHH-CcCHHHHHHHHHHHHHHHC
Confidence 346788888877655333 357899999 8999999999998877664
No 119
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=49.22 E-value=10 Score=23.80 Aligned_cols=31 Identities=6% Similarity=0.295 Sum_probs=24.9
Q ss_pred hHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 31 EEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 31 ~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
..|..||..+.-.+...++.+|..++.....
T Consensus 71 ~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 101 (116)
T 2li6_A 71 QQWSMVAQRLQISDYQQLESIYFRILLPYER 101 (116)
T ss_dssp TCHHHHHHHHTSCCTTHHHHHHHHHHSHHHH
T ss_pred CcHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 4799999999656678899999988766554
No 120
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=48.27 E-value=21 Score=21.53 Aligned_cols=28 Identities=4% Similarity=0.171 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 040518 32 EWVKIHSLVPTKTIDEIKVHFKKLMEDLE 60 (81)
Q Consensus 32 RWekIA~~vpgKS~~ev~~ry~~L~~dv~ 60 (81)
+|+.=. .+.|.|.++.++.|-.+++.+.
T Consensus 57 Kw~AW~-~l~gms~eeA~~~YI~~v~~l~ 84 (89)
T 1hbk_A 57 KYEAWK-SVENLNREDAQKRYVDIVSEIF 84 (89)
T ss_dssp HHHHHH-HTTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHc
Confidence 344433 3579999999999999999874
No 121
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=47.99 E-value=7.6 Score=25.28 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhccCCCchH----HHHHHHhCCCCCHHHHHHHHH
Q 040518 13 ENKAFENGVALYYKEGQDEE----WVKIHSLVPTKTIDEIKVHFK 53 (81)
Q Consensus 13 E~k~fE~aL~~~~p~~~~~R----WekIA~~vpgKS~~ev~~ry~ 53 (81)
+..+|+-.++..+ -+...= =..||..+-|||++++++.|+
T Consensus 96 ~~~l~eLl~AAny-L~I~~Lld~~c~~va~~i~gkt~eeir~~f~ 139 (159)
T 2ast_A 96 QGTLFELILAANY-LDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 139 (159)
T ss_dssp HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHSSCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 4556666655441 121111 146899999999999999886
No 122
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=47.13 E-value=28 Score=22.04 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=29.1
Q ss_pred hHHHHHHHhCCCC-C----HHHHHHHHHHHHHHHhhhhcCCC
Q 040518 31 EEWVKIHSLVPTK-T----IDEIKVHFKKLMEDLELIEFGFE 67 (81)
Q Consensus 31 ~RWekIA~~vpgK-S----~~ev~~ry~~L~~dv~~Ie~g~v 67 (81)
..|..||..+.-- + ...++.+|..++........|..
T Consensus 74 k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~~~~~ 115 (128)
T 1c20_A 74 KLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLS 115 (128)
T ss_dssp TTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHHHCCS
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5799999999432 1 57899999999999888777643
No 123
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=46.89 E-value=43 Score=19.79 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCC---------------CCHHHHHHHHHHHHHHHhhh
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPT---------------KTIDEIKVHFKKLMEDLELI 62 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpg---------------KS~~ev~~ry~~L~~dv~~I 62 (81)
...||.++...||.....- +--+...=+.||..+ | -|..+|+.=|++--...+..
T Consensus 11 R~~ft~~ql~~Le~~F~~~-~yP~~~~r~~lA~~l-~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 11 RFTWRKECLAVMESYFNEN-QYPDEAKREEIANAC-NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp SCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH-CchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 4579999999999998776 555666778999988 6 88999987776555544443
No 124
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=46.41 E-value=39 Score=19.15 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
....|.++...||.....- +--+...=..||..+ |-|..+|+.=|++=-
T Consensus 13 Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~WFqNRR 61 (77)
T 1nk2_P 13 RVLFTKAQTYELERRFRQQ-RYLSAPEREHLASLI-RLTPTQVKIWFQNHR 61 (77)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHh-CCCHHHHHHHhHHhh
Confidence 3468999999999997766 544556668899999 899999986665433
No 125
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=46.29 E-value=11 Score=24.57 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 040518 43 KTIDEIKVHFKKLMEDLELIEFGFEPVS 70 (81)
Q Consensus 43 KS~~ev~~ry~~L~~dv~~Ie~g~v~~P 70 (81)
|+++.+.+++..+-.++..||.|.++=|
T Consensus 18 ksv~~~~kkl~~~~~el~~iekGFL~ke 45 (114)
T 1hx1_B 18 KSVEKIADQLEELNKELTGIQQGFLPKD 45 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccH
Confidence 6778888999999999999999987643
No 126
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=45.93 E-value=58 Score=21.01 Aligned_cols=48 Identities=8% Similarity=0.061 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKL 55 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L 55 (81)
...+|.++...||...... +--+...=+.||..+ |-|..+|+.=|++-
T Consensus 101 Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~la~~l-~L~~~qV~~WFqNr 148 (164)
T 2d5v_A 101 RLVFTDVQRRTLHAIFKEN-KRPSKELQITISQQL-GLELSTVSNFFMNA 148 (164)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH-CcCHHHhhhcChhh
Confidence 4569999999999998777 655666778999999 89999998777653
No 127
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=45.52 E-value=34 Score=18.20 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
...|.++...||.+...- +--+...=..||..+ |-|..+|+.=|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~~WFqN 47 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQ-KYLASAERAALAKAL-RMTDAQVKTWFQN 47 (56)
T ss_dssp --CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhc-CCcCHHHHHHHHHHh-CcCHHHhhHhhHH
Confidence 357899999999997665 444445557899999 8999999865543
No 128
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=45.14 E-value=36 Score=18.37 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 10 SWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 10 T~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
++.|..+|....- + ....+-.+..||..+ |-|..-|+.+.......++.
T Consensus 7 ~~~er~il~l~~~-l-~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 7 TAREAKVLRMRFG-I-DMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CHHHHHHHHHHTT-T-TSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHc-c-CCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 4555555544320 0 111334689999999 99999999999888887775
No 129
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=44.80 E-value=32 Score=20.46 Aligned_cols=55 Identities=7% Similarity=0.044 Sum_probs=41.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 3 GSNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 3 ~~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
+.....|+.-.+++.|.+|..+...-+.=.-+.+|..+ |-+.++|-..--.++.+
T Consensus 3 ~~~~~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll-~ls~~~vE~~ls~mI~~ 57 (84)
T 1ufm_A 3 SGSSGGSSILDRAVIEHNLLSASKLYNNITFEELGALL-EIPAAKAEKIASQMITE 57 (84)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHT-TSCHHHHHHHHHHHHHT
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHH-CcCHHHHHHHHHHHHhC
Confidence 34456799999999999988873223445689999999 89999887776666554
No 130
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=44.54 E-value=53 Score=21.30 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 14 NKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 14 ~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
+..+..+|... + .-.+..||+.+ |-|...|.+|.+.|.+.
T Consensus 29 d~~IL~~L~~~-~---~~s~~eLA~~l-glS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 29 DKKIIKILQND-G---KAPLREISKIT-GLAESTIHERIRKLRES 68 (171)
T ss_dssp HHHHHHHHHHC-T---TCCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-C---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 33444566555 3 34689999999 89999999999998654
No 131
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=44.20 E-value=40 Score=18.64 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=39.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 040518 4 SNQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLME 57 (81)
Q Consensus 4 ~s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~ 57 (81)
......|.++...||.....- +--+...=..||..+ |-|..+|+.=|++=-.
T Consensus 4 r~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~~WFqNRR~ 55 (68)
T 1ftt_A 4 KRRVLFSQAQVYELERRFKQQ-KYLSAPEREHLASMI-HLTPTQVKIWFQNHRY 55 (68)
T ss_dssp SSCSSCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHh-CCCHHHhHHHhHHHhh
Confidence 456678999999999997665 444455557899999 8999999876665433
No 132
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=43.72 E-value=33 Score=19.19 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=29.5
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHH
Q 040518 15 KAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFK 53 (81)
Q Consensus 15 k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~ 53 (81)
.+|...+..+ +....-.|+.||..-.|-|..|+..-.+
T Consensus 10 ~Il~~~l~~~-~~~~~~dl~~la~~t~G~SGADi~~l~~ 47 (78)
T 3kw6_A 10 DILKIHSRKM-NLTRGINLRKIAELMPGASGAEVKGVCT 47 (78)
T ss_dssp HHHHHHHTTS-EECTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHHhcCC-CCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 4777777777 6544456999999999999999876443
No 133
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=43.07 E-value=27 Score=21.03 Aligned_cols=29 Identities=10% Similarity=0.251 Sum_probs=22.7
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 32 EWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 32 RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
+|+.=. .+.|.|.++.++.|-.+++.+..
T Consensus 55 Kw~AW~-~l~gms~eeA~~~Yi~~v~~l~~ 83 (87)
T 2cb8_A 55 KWDAWN-ELKGTSKEDAMKAYINKVEELKK 83 (87)
T ss_dssp HHHHHH-TTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHHH
Confidence 344433 35799999999999999998764
No 134
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=42.46 E-value=55 Score=19.73 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 13 ENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 13 E~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
|.+ |-..+..| |.|..+ +.+...+|+-++++...--+.|+..
T Consensus 16 e~~-IL~l~~~~-P~GItd--~~L~~~~p~~~~~~r~~aIN~LL~~ 57 (81)
T 2dk8_A 16 ENR-IIELCHQF-PHGITD--QVIQNEMPHIEAQQRAVAINRLLSM 57 (81)
T ss_dssp HHH-HHHHHHHC-SSCEEH--HHHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHhC-CCCCCH--HHHHHHCCCCCHHHHHHHHHHHHHc
Confidence 444 55566899 999765 4599999999999999988888763
No 135
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=42.32 E-value=15 Score=24.49 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCC
Q 040518 43 KTIDEIKVHFKKLMEDLELIEFGFEP 68 (81)
Q Consensus 43 KS~~ev~~ry~~L~~dv~~Ie~g~v~ 68 (81)
+|+..+.++|..+-.++..|+.|.++
T Consensus 28 ksv~~~~k~l~~l~~el~~iekGFL~ 53 (135)
T 1i6z_A 28 VSAEKIANHLQELNKELSGIQQGFLA 53 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 56777888999999999999999865
No 136
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=42.16 E-value=48 Score=19.04 Aligned_cols=48 Identities=6% Similarity=0.095 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHH---HhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGV---ALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL---~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
.....|.++...||..+ ... |--+...=+.||..+ |-|..+|+.=|+.
T Consensus 4 ~R~~ft~~q~~~Le~~f~~h~~~-~yp~~~~r~~La~~~-~l~~~qV~~WFqN 54 (87)
T 1b72_B 4 KRRNFNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC-GITVSQVSNWFGN 54 (87)
T ss_dssp CCCCCCHHHHHHHHHHHHTTTTS-CCCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 34678999999999998 444 433556667899999 8999999866554
No 137
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=42.10 E-value=41 Score=18.15 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
.....|.++...||.....- +--+...=..||..+ |-|..+|+.=|++
T Consensus 6 ~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~~WFqN 53 (62)
T 2vi6_A 6 MRTVFSQAQLCALKDRFQKQ-KYLSLQQMQELSSIL-NLSYKQVKTWFQN 53 (62)
T ss_dssp --CCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHh-CCCHHHhhHHhHH
Confidence 34578999999999997665 444445557899999 8999999866654
No 138
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=41.62 E-value=11 Score=18.50 Aligned_cols=17 Identities=12% Similarity=0.507 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 040518 45 IDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 45 ~~ev~~ry~~L~~dv~~ 61 (81)
++++++++..|++.|..
T Consensus 3 ~e~mr~Q~~~lveKvq~ 19 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQA 19 (26)
T ss_dssp HHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788999999998876
No 139
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=41.39 E-value=29 Score=21.01 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=22.2
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 33 WVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 33 WekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
|+.=. .+.|.|.++.++.|-.+++.+..
T Consensus 58 w~AW~-~l~g~s~eeA~~~Yi~~v~~l~~ 85 (89)
T 3epy_A 58 WEAWN-LKKGLSTEDATSAYISKAKELIE 85 (89)
T ss_dssp HHHHH-TTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HhhCCCHHHHHHHHHHHHHHHhh
Confidence 44433 37799999999999999998764
No 140
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=41.09 E-value=31 Score=21.38 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 32 EWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 32 RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
+|+.=. .+.|.|.++.++.|-.|++.+..
T Consensus 64 Kw~AW~-~l~gmS~eeAm~~YI~lv~~l~~ 92 (96)
T 2lbb_A 64 KWEAWN-ALRGMSTESAKEAYVKLLDTLAP 92 (96)
T ss_dssp HHHHHH-HTTTCCHHHHHHHHHHHHHHHCG
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHhc
Confidence 344443 25799999999999999998753
No 141
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=40.55 E-value=58 Score=19.45 Aligned_cols=52 Identities=10% Similarity=-0.037 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLME 57 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~ 57 (81)
....-|.++..+|+.+.+..-+.-+...=+.||+.+ |-+...|+--|++-.-
T Consensus 10 ~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~t-GL~~~~IqVWFQNrR~ 61 (71)
T 1wi3_A 10 SRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQL-DLPKHTIIKFFQNQRY 61 (71)
T ss_dssp CCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCHHHHHHhhcccee
Confidence 345689999999999998831333556789999999 9999999877765443
No 142
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=40.38 E-value=22 Score=21.34 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=22.6
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 32 EWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 32 RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
+|+.=. .+.|.|.++.+++|-.+++.+..
T Consensus 54 Kw~AW~-~l~gms~eeA~~~YI~~v~~l~~ 82 (86)
T 1st7_A 54 KWEAWE-NLKGKSQEDAEKEYIALVDQLIA 82 (86)
T ss_dssp HHHHHH-TTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHhh
Confidence 344443 35799999999999999998764
No 143
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=40.05 E-value=41 Score=20.28 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=23.1
Q ss_pred hHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 31 EEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 31 ~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
-.=..||..| |-|...|++|-..|.++
T Consensus 31 ~sa~eLAk~L-giSk~aVr~~L~~Le~e 57 (82)
T 1oyi_A 31 ATAAQLTRQL-NMEKREVNKALYDLQRS 57 (82)
T ss_dssp EEHHHHHHHS-SSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 3457899999 89999999999999664
No 144
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=39.79 E-value=58 Score=19.27 Aligned_cols=49 Identities=12% Similarity=0.166 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
....|.++...||.....- +--+...=..||..+ |-|..+|+.=|++=-
T Consensus 38 Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~vWFqNRR 86 (97)
T 1b72_A 38 RTNFTTRQLTELEKEFHFN-KYLSRARRVEIAATL-ELNETQVKIWFQNRR 86 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh-CCCHHHhHHHHHHHh
Confidence 4569999999999997665 444455557899999 899999986665443
No 145
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=39.74 E-value=53 Score=18.75 Aligned_cols=47 Identities=9% Similarity=0.125 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
....|.++...||.+.... +.-+...=..||..+ |-|..+|+-=|+.
T Consensus 26 Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~vWFqN 72 (84)
T 2kt0_A 26 RTVFSSTQLCVLNDRFQRQ-KYLSLQQMQELSNIL-NLSYKQVKTWFQN 72 (84)
T ss_dssp SSCCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 3468999999999997665 444445557899999 8999999876654
No 146
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=38.43 E-value=39 Score=21.21 Aligned_cols=24 Identities=4% Similarity=-0.036 Sum_probs=20.9
Q ss_pred hCCCCCHHHHHHHHHHHHHHHhhh
Q 040518 39 LVPTKTIDEIKVHFKKLMEDLELI 62 (81)
Q Consensus 39 ~vpgKS~~ev~~ry~~L~~dv~~I 62 (81)
.+.|.|.++.++.|-.+++.+..-
T Consensus 67 ~l~gmS~eeA~~~YI~~v~~l~~~ 90 (106)
T 3fp5_A 67 SVEGTSKEVAYQKYVEKLLEILKK 90 (106)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHhcc
Confidence 457999999999999999988764
No 147
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.30 E-value=61 Score=19.05 Aligned_cols=53 Identities=11% Similarity=0.031 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Q 040518 8 QWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELI 62 (81)
Q Consensus 8 ~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~I 62 (81)
..|.++...||.+.... +--+...=+.||..+ |-|..+|+.=|++--...+..
T Consensus 19 ~~t~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~-~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKS-SFPTQAELDRLRVET-KLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHccC-CCCCHHHHHHHHHHh-CCCHHhccHhhHhHHHHHHHH
Confidence 37999999999997666 444455557899999 899999987776655444443
No 148
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=38.15 E-value=43 Score=22.73 Aligned_cols=51 Identities=6% Similarity=0.089 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Q 040518 9 WSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELI 62 (81)
Q Consensus 9 WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~I 62 (81)
-+..|...|..++..| . +.+-.-.++|..+ |.+...+.++++.+..+...|
T Consensus 245 l~~~e~~~i~~~~~~~-~-g~~~~~~~~a~~l-gi~~~tl~~~l~~~~i~~~li 295 (324)
T 1hqc_A 245 LEKRDREILEVLILRF-G-GGPVGLATLATAL-SEDPGTLEEVHEPYLIRQGLL 295 (324)
T ss_dssp CCHHHHHHHHHHHHHS-C-SSCCCHHHHHHHT-TSCHHHHHHHTHHHHHHTTSE
T ss_pred CCHHHHHHHHHHHHHh-c-CCCchHHHHHHHh-CCCHHHHHHHHhHHHHHhcch
Confidence 4556777888888887 3 3333467899988 899999988888765544444
No 149
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.66 E-value=32 Score=21.60 Aligned_cols=29 Identities=7% Similarity=0.242 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 32 EWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 32 RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
+|+.=. .+.|.|.++.++.|-.|++.+..
T Consensus 61 Kw~AW~-~l~gms~eeAm~~YI~lv~~l~~ 89 (109)
T 2cop_A 61 KWEAWK-ALGDSSPSQAMQEYIAVVKKLDP 89 (109)
T ss_dssp HHHHHH-SCTTCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHhh
Confidence 455554 45799999999999999998865
No 150
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=37.29 E-value=52 Score=17.95 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 040518 9 WSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLE 60 (81)
Q Consensus 9 WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~ 60 (81)
-++.|..+|..-.- + ..+.+-.+..||..+ |.|..-|+.+.......++
T Consensus 11 L~~~er~il~l~~~-l-~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSEREAMVLKMRKG-L-IDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHHHHHHHHHHT-T-TTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-c-ccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 46667766665431 1 112345799999999 8999999998888887777
No 151
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=36.76 E-value=58 Score=18.38 Aligned_cols=47 Identities=11% Similarity=0.175 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
....|.++...||.....- +--+...=+.||..+ |-|..+|+.=|+.
T Consensus 17 Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~vWFqN 63 (77)
T 1puf_A 17 RCPYTKHQTLELEKEFLFN-MYLTRDRRYEVARLL-NLTERQVKIWFQN 63 (77)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 4569999999999997665 444455567899999 8999999865544
No 152
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=36.40 E-value=32 Score=19.75 Aligned_cols=46 Identities=22% Similarity=0.209 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 8 QWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 8 ~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
.-|+.|..+|.-.+ .|. .-..||..+ |.|..-|+.|...+...+..
T Consensus 29 ~Lt~~e~~vl~l~~-----~g~--s~~eIA~~l-~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 29 MLTEREMEILLLIA-----KGY--SNQEIASAS-HITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GCCSHHHHHHHHHH-----TTC--CTTHHHHHH-TCCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHH-----cCC--CHHHHHHHH-CcCHHHHHHHHHHHHHHHCC
Confidence 35777777776632 122 246799999 89999999998888776643
No 153
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=35.90 E-value=64 Score=18.63 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHHHh---hccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVAL---YYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~---~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
....|.++...||..+.. . |--+...=+.||..+ |-|..+|+.=|+.
T Consensus 31 r~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~-gL~~~qV~~WFqN 80 (87)
T 1mnm_C 31 GHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT-SLSRIQIKNWVSN 80 (87)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSS-CCCCHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 457999999999999988 5 444555557889988 8999999876654
No 154
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=35.81 E-value=77 Score=19.51 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 10 SWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 10 T~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
+.-+.+++ .+|... + .-.+..||+.+ |-|..-|.++.+.|.+.
T Consensus 8 d~~d~~il-~~L~~~-~---~~s~~ela~~l-g~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 8 DRVDMQLV-KILSEN-S---RLTYRELADIL-NTTRQRIARRIDKLKKL 50 (151)
T ss_dssp CHHHHHHH-HHHHHC-T---TCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHc-C---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 34444444 556544 2 34689999999 89999999999999754
No 155
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=35.74 E-value=69 Score=18.92 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLME 57 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~ 57 (81)
...+|.++...||...... +--+...=..||..+ |-|..+|+.=|++=-.
T Consensus 21 Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR~ 70 (93)
T 3a01_A 21 RTSFTRIQVAELEKRFHKQ-KYLASAERAALARGL-KMTDAQVKTWFQNRRT 70 (93)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHTT-TCCHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHh-CCChhhcccccHhhhh
Confidence 3469999999999997666 544555567899988 8999999866655433
No 156
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.49 E-value=61 Score=18.27 Aligned_cols=53 Identities=25% Similarity=0.208 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
..-|.++...||.+...- +--+...=..||..+ |-|..+|+.=|++--.-.+.
T Consensus 12 ~~~t~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~~WFqNRR~k~kk 64 (75)
T 2da5_A 12 KERAPEQLRALESSFAQN-PLPLDEELDRLRSET-KMTRREIDSWFSERRKKVNA 64 (75)
T ss_dssp CCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-CCCHHHHHHHHHHHTTHHHH
T ss_pred ccCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh-CCCHHHhhHhhHHHHHHHHH
Confidence 358999999999997665 444445557899999 89999998777654444443
No 157
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=35.47 E-value=59 Score=18.06 Aligned_cols=50 Identities=6% Similarity=0.066 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHH---HhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGV---ALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL---~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
.....|.++...||..+ ... |--+...=..||..+ |-|..+|+.=|+.--
T Consensus 4 ~R~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~-~L~~~qV~~WFqNrR 56 (73)
T 1puf_B 4 KRRNFNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC-GITVSQVSNWFGNKR 56 (73)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhccC-CCcCHHHHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 45678999999999998 444 434556668899999 899999987665543
No 158
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=35.42 E-value=43 Score=18.91 Aligned_cols=38 Identities=5% Similarity=-0.050 Sum_probs=28.7
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHH
Q 040518 15 KAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFK 53 (81)
Q Consensus 15 k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~ 53 (81)
.+|+.-+..+ +....-.|+.||..-.|-|..|+..-.+
T Consensus 8 ~Il~~~l~~~-~~~~~vdl~~la~~t~G~SGADi~~l~~ 45 (83)
T 3aji_B 8 LIFSTITSKM-NLSEEVDLEDYVARPDKISGADINSICQ 45 (83)
T ss_dssp HHHHHHHTTS-CBCTTCCTHHHHTSSCCCCHHHHHHHHH
T ss_pred HHHHHHhCCC-CCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 4667777777 6444456999999999999999876443
No 159
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A
Probab=35.09 E-value=1e+02 Score=20.93 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 8 QWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 8 ~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
.-|.++.++++.++... ..-|++.-||.+..+|-...+..++.
T Consensus 118 ~~~~~~~~~~~~v~~a~--------~~~i~~~kpG~~~~~i~~~~~~~~~~ 160 (262)
T 3mx6_A 118 DVAIKPKRLIQVTYDAM--------MKGIEVVRPGAKLGDIGYAIQSYAEK 160 (262)
T ss_dssp SCCHHHHHHHHHHHHHH--------HHHHHTCSTTCBHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH--------HHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 45888899999998776 45788899999999998887776654
No 160
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=35.04 E-value=6.9 Score=24.13 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=27.5
Q ss_pred hHHHHHHHhCCCC-----CHHHHHHHHHHHHHHHhhhhcC--CCCCCC
Q 040518 31 EEWVKIHSLVPTK-----TIDEIKVHFKKLMEDLELIEFG--FEPVSI 71 (81)
Q Consensus 31 ~RWekIA~~vpgK-----S~~ev~~ry~~L~~dv~~Ie~g--~v~~P~ 71 (81)
..|..||..+.-- ....++.+|..++......-+| ..|+|.
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~~~~~~p~ 102 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPP 102 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHHTSSSSCT
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 5899999998531 1357899999888766654333 344543
No 161
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=34.97 E-value=39 Score=15.86 Aligned_cols=17 Identities=12% Similarity=0.507 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 040518 45 IDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 45 ~~ev~~ry~~L~~dv~~ 61 (81)
+++|+.++..+.+-|..
T Consensus 7 ~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 7 VEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 57888999888887753
No 162
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=34.82 E-value=65 Score=18.36 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 32 EWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 32 RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
.-..||..+ |.|..-|+.|.......++.
T Consensus 55 s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 55 STAQIATDL-GIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp CHHHHHHHH-TSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 356788888 78888888777766666654
No 163
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1
Probab=34.39 E-value=1e+02 Score=20.97 Aligned_cols=42 Identities=7% Similarity=0.049 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 9 WSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 9 WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
-|.++.++++.++... ..-|+..-||.+..+|-...+..+++
T Consensus 128 ~~~~~~~~~~~v~~a~--------~~~i~~~kpG~~~~~v~~~~~~~~~~ 169 (262)
T 1o0x_A 128 TDERGKELVRVTREVL--------EKAIKMIKPGIRLGDVSHCIQETVES 169 (262)
T ss_dssp CCHHHHHHHHHHHHHH--------HHHHHTCCTTSBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--------HHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 5788888999888766 57788999999999998888877764
No 164
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=33.17 E-value=1e+02 Score=20.17 Aligned_cols=53 Identities=9% Similarity=0.048 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLE 60 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~ 60 (81)
...+|.++...||.....- +.-+...=..||..+ |-|..+|+.=|++-....+
T Consensus 103 Rt~ft~~Ql~~LE~~F~~~-~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR~k~k 155 (164)
T 2xsd_C 103 RTSIEVGVKGALESHFLKC-PKPSAHEITGLADSL-QLEKEVVRVWFCNRRQKEK 155 (164)
T ss_dssp ---CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHT
T ss_pred ceeccHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH-CCChhhhhhhhHHhhHHHh
Confidence 3468999999999997766 555556668899999 8999999877766444333
No 165
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=32.52 E-value=47 Score=20.11 Aligned_cols=40 Identities=10% Similarity=0.100 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 13 ENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 13 E~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
+.+++ .+|... + +-++..||+.+ |-|..-|.++.+.|.+.
T Consensus 6 ~~~il-~~L~~~-~---~~~~~ela~~l-g~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 6 DKIIL-EILEKD-A---RTPFTEIAKKL-GISETAVRKRVKALEEK 45 (141)
T ss_dssp HHHHH-HHHHHC-T---TCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHc-C---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 33444 356444 2 34699999999 99999999999999764
No 166
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=32.37 E-value=59 Score=20.34 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Q 040518 32 EWVKIHSLVPTKTIDEIKVHFKKLMEDLELI 62 (81)
Q Consensus 32 RWekIA~~vpgKS~~ev~~ry~~L~~dv~~I 62 (81)
+|+.=. .+.|.|.++.++.|-.+++.+..-
T Consensus 65 Kw~AW~-~l~gms~eeA~~~YI~~v~~l~~k 94 (106)
T 2wh5_A 65 KWDAWN-SLGKMSREEAMSAYITEMKLVAQK 94 (106)
T ss_dssp HHHHHH-TTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHHHH
Confidence 565554 357999999999999999987653
No 167
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=32.25 E-value=75 Score=18.34 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
....|.++...||.....- +--+...=..||..+ |-|..+|+.=|++
T Consensus 32 Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~vWFqN 78 (88)
T 2r5y_A 32 RTSYTRYQTLELEKEFHFN-RYLTRRRRIEIAHAL-SLTERQIKIWFQN 78 (88)
T ss_dssp CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh-CcCHHHhhHHhHH
Confidence 3568999999999997655 433445557899999 8999999866654
No 168
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=32.02 E-value=1e+02 Score=19.89 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKL 55 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L 55 (81)
....|.++...||...... +.-+...=+.||..+ |-|..+|+-=|++-
T Consensus 105 Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~L~~~qV~vWFqNR 152 (160)
T 1e3o_C 105 RTSIETNIRVALEKSFMEN-QKPTSEDITLIAEQL-NMEKEVIRVWFSNR 152 (160)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHH-CCChHHhhHhhHHh
Confidence 3468999999999998776 555556668899999 89999998766543
No 169
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=31.95 E-value=88 Score=19.02 Aligned_cols=45 Identities=7% Similarity=0.120 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 040518 10 SWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLME 57 (81)
Q Consensus 10 T~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~ 57 (81)
+.+|.++.++.+..| .. .|-....+|..+ |-+...+..-.+.|++
T Consensus 2 ~~~~~~l~~~i~~~~-~~-~p~~~~~la~~~-~~~~~~~~~~l~~l~~ 46 (121)
T 2pjp_A 2 SEEQQAIWQKAEPLF-GD-EPWWVRDLAKET-GTDEQAMRLTLRQAAQ 46 (121)
T ss_dssp CHHHHHHHHHHGGGC-SS-SCEEHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-Hh-CCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 567888888888888 44 555667899888 6677777665555544
No 170
>3rvc_A NS1, NS1A, non-structural protein 1; interferon antagonist, protein binding; 1.80A {Influenza a virus} PDB: 3o9q_A 3o9r_A 3l4q_A 3o9t_A* 3o9s_A* 3o9u_B 2gx9_A 3p38_A 3p39_A 3p31_A 2kkz_A 2rhk_A 3kwg_A 3kwi_A 3m5r_A 3ee9_A 3ee8_A
Probab=31.91 E-value=49 Score=22.13 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=17.8
Q ss_pred hCCCCCHHHHHHHHHHHHHHHh-------------------hhhcCCCCCCCC
Q 040518 39 LVPTKTIDEIKVHFKKLMEDLE-------------------LIEFGFEPVSID 72 (81)
Q Consensus 39 ~vpgKS~~ev~~ry~~L~~dv~-------------------~Ie~g~v~~P~~ 72 (81)
.+||.|.++|++.---|+--+. .-|.|+-|||.-
T Consensus 87 slpght~edvknaigvligglewn~ntvrvse~lqrfaw~~~~engrp~l~p~ 139 (152)
T 3rvc_A 87 SLPGHTAEDVKNAVGVLIGGLEANDNTVRVSETLQRFAWRSSNENGRPPLTPK 139 (152)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHHTTCEEEECHHHHHHTC--------------
T ss_pred CCCCCchHHHHHhHhheecceeecCceeeHHHHHHHHHhcccCcCCCCCCChH
Confidence 3899999999998887776543 247788887753
No 171
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.87 E-value=57 Score=16.82 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=23.0
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 33 WVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 33 WekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
-..||..+ |-|..-|+.|...+.+.+..
T Consensus 16 ~~eIA~~l-~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 16 NHGISEKL-HISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp SHHHHHHT-CSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHHHHCC
Confidence 36899999 89999999998887776543
No 172
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=31.67 E-value=93 Score=19.21 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 10 SWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 10 T~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
+.-+.+++ .+|... + .-.+..||+.+ |-|..-|.+|.+.|.+.
T Consensus 6 d~~~~~il-~~L~~~-~---~~s~~ela~~l-g~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 6 DEIDKKII-KILQND-G---KAPLREISKIT-GLAESTIHERIRKLRES 48 (151)
T ss_dssp CHHHHHHH-HHHHHC-T---TCCHHHHHHHH-CSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHc-C---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 34444444 466554 2 34689999999 89999999999999654
No 173
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=31.49 E-value=83 Score=18.57 Aligned_cols=49 Identities=12% Similarity=-0.002 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
....|.++...||.....- +--+...=..||..+ |-|..+|+.=|+.-.
T Consensus 29 Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR 77 (96)
T 3nar_A 29 ICKKTPEQLHMLKSAFVRT-QWPSPEEYDKLAKES-GLARTDIVSWFGDTR 77 (96)
T ss_dssp SSSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh-CCCHHHeeecchhhh
Confidence 4569999999999997654 333444456799998 899999987666543
No 174
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=31.25 E-value=1e+02 Score=19.66 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
....|.++...||.....- +.-+...=..||..+ |-|..+|+.=|++
T Consensus 91 Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~L~~~qV~vWFqN 137 (146)
T 1au7_A 91 RTTISIAAKDALERHFGEH-SKPSSQEIMRMAEEL-NLEKEVVRVWFCN 137 (146)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CcCccHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh-CCChhhchhhhHh
Confidence 4569999999999998776 555666678899999 8999999866654
No 175
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=31.16 E-value=71 Score=17.70 Aligned_cols=49 Identities=8% Similarity=-0.003 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHHhh--ccCCCchHHHHHHHhCCCCCHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALY--YKEGQDEEWVKIHSLVPTKTIDEIKVHFKKL 55 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~--~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L 55 (81)
....|.++...||..+..+ -|--+...=+.||..+ |-|..+|..=|+.-
T Consensus 11 R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~-~L~~~qV~~WFqNr 61 (73)
T 1x2n_A 11 RGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQT-NLTLLQVNNWFINA 61 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-CcCHHHHHHHhHHH
Confidence 3468999999999999651 0323455668899998 89999998766543
No 176
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=30.84 E-value=78 Score=18.08 Aligned_cols=47 Identities=11% Similarity=0.178 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
....|.++...||.....- +--+...=+.||..+ |-|..+|+.=|++
T Consensus 24 Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l-~l~~~qV~vWFqN 70 (81)
T 1b8i_A 24 RQTYTRYQTLELEKEFHTN-HYLTRRRRIEMAHAL-SLTERQIKIWFQN 70 (81)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh-CCCHHHHHHHhHH
Confidence 3468999999999997665 444455557899999 8999999866654
No 177
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=30.72 E-value=59 Score=16.82 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhh
Q 040518 40 VPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 40 vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
++|||.++-++-++.+.+-+..
T Consensus 8 ~~grs~eqk~~l~~~i~~~l~~ 29 (61)
T 2opa_A 8 LEGRTDEQKRNLVEKVTEAVKE 29 (61)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHH
Confidence 5789999988888888887776
No 178
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=30.65 E-value=97 Score=19.10 Aligned_cols=41 Identities=7% Similarity=0.139 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 12 EENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 12 eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
-+.+++ .+|... + .-.+..||+.+ |-|..-|.+|.+.|.+.
T Consensus 9 ~d~~il-~~L~~~-~---~~s~~ela~~l-g~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 9 LDRGIL-EALMGN-A---RTAYAELAKQF-GVSPETIHVRVEKMKQA 49 (152)
T ss_dssp HHHHHH-HHHHHC-T---TSCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHc-C---CCCHHHHHHHH-CcCHHHHHHHHHHHHHc
Confidence 344444 456554 2 34689999999 89999999999999765
No 179
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=30.64 E-value=85 Score=19.21 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=28.1
Q ss_pred HHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 17 FENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 17 fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
+..+|... .+-.+..||+.+ |-|...|.+|.+.|.+.
T Consensus 8 il~~L~~~----~~~~~~ela~~l-g~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 8 ILKILQYN----AKYSLDEIAREI-RIPKATLSYRIKKLEKD 44 (150)
T ss_dssp HHHHHTTC----TTSCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHc----CCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 33455443 335699999999 89999999999998654
No 180
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=30.37 E-value=55 Score=21.07 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=21.5
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 33 WVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 33 WekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
|+.=. .+.|.|.++.++.|-.+++.+..
T Consensus 82 w~AW~-~l~gmS~eeAm~~YI~~v~~l~~ 109 (119)
T 3flv_A 82 WDAWS-SLGDMTKEEAMIAYVEEMKKIIE 109 (119)
T ss_dssp HHHHH-HTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HccCCCHHHHHHHHHHHHHHHHh
Confidence 44333 35699999999999999987754
No 181
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A* 2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A* 2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A* 3mat_A* 1yvm_A* 2mat_A ...
Probab=30.25 E-value=1.3e+02 Score=20.38 Aligned_cols=42 Identities=12% Similarity=0.159 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 9 WSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 9 WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
-|.++.++++.++... ..-|++.-||.+..+|-...+..+++
T Consensus 117 ~~~~~~~~~~~v~~a~--------~~~i~~~kpG~~~~~v~~~~~~~~~~ 158 (263)
T 2gg2_A 117 PTIMGERLCRITQESL--------YLALRMVKPGINLREIGAAIQKFVEA 158 (263)
T ss_dssp CCHHHHHHHHHHHHHH--------HHHHHHCSTTCBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--------HHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 5788888888888766 56789999999999998887776654
No 182
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=29.82 E-value=1.1e+02 Score=19.48 Aligned_cols=47 Identities=9% Similarity=0.097 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
....|.++...||...... +.-+...=..||..+ |-|..+|+.=|++
T Consensus 97 Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l-~L~~~qV~vWFqN 143 (151)
T 3d1n_I 97 RTSFTPQAIEALNAYFEKN-PLPTGQEITEMAKEL-NYDREVVRVWFSN 143 (151)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH-CCCHHHhHHHHHH
Confidence 4568999999999998776 655666678899999 8999999866654
No 183
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=29.58 E-value=78 Score=20.64 Aligned_cols=48 Identities=15% Similarity=0.012 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 10 SWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 10 T~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
|..|.++|+-.+......+.|-.-..||+.+ |-|..-|.+|-+.|.++
T Consensus 4 t~~q~~il~~I~~~~~~~g~~~s~~eia~~l-gl~~~tv~~~l~~Le~~ 51 (196)
T 3k2z_A 4 TERQRKVLLFIEEFIEKNGYPPSVREIARRF-RITPRGALLHLIALEKK 51 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCHHHHHHHc-CCCcHHHHHHHHHHHHC
Confidence 5667777766543321123344578999999 76666788888877654
No 184
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.02 E-value=81 Score=20.05 Aligned_cols=28 Identities=11% Similarity=0.304 Sum_probs=22.1
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 33 WVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 33 WekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
|+.-.+ +.|.|.++.++.|-.|++.+..
T Consensus 70 w~AW~~-l~gms~eeAm~~YI~lv~~l~~ 97 (116)
T 2cqu_A 70 WDAWNA-LGSLPKEAARQNYVDLVSSLSP 97 (116)
T ss_dssp HHHHHH-HCSCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHcc
Confidence 444333 4699999999999999998875
No 185
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=29.01 E-value=66 Score=16.68 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=34.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
.....|.++...||.....- +--+...=..||..+ |-|..+|+.=|++
T Consensus 5 ~Rt~~t~~q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~WFqN 52 (58)
T 3rkq_A 5 PRVLFSQAQVYELERRFKQQ-RYLSAPERDQLASVL-KLTSTQVKIWFQN 52 (58)
T ss_dssp CCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh-CcCHHHHHHhhHH
Confidence 34568999999999987654 333334446789888 8999999876654
No 186
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Probab=28.54 E-value=1.5e+02 Score=20.73 Aligned_cols=42 Identities=7% Similarity=-0.129 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 9 WSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 9 WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
-|.++.++++..+..+ ..-|++.-||.+..+|-...+..+.+
T Consensus 239 ~~~~~~~~~~~v~~~~--------~~~~~~~~pG~~~~~v~~~~~~~~~~ 280 (359)
T 2zsg_A 239 PSDEVKEVHSIVLEAQ--------ERALKIAKAGVTGKLLDSVAREFIRE 280 (359)
T ss_dssp CCHHHHHHHHHHHHHH--------HHHHHHCCTTCBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--------HHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 5788888999988777 56788999999999998888776655
No 187
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=27.62 E-value=1.2e+02 Score=19.40 Aligned_cols=44 Identities=14% Similarity=0.020 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 9 WSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 9 WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
=+.-+.++ ..+|..- + .-.+..||+.+ |-|..-|.++.+.|.+.
T Consensus 15 ld~~d~~I-L~~L~~~-~---~~s~~eLA~~l-glS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 15 LDDLDRNI-LRLLKKD-A---RLTISELSEQL-KKPESTIHFRIKKLQER 58 (171)
T ss_dssp CCHHHHHH-HHHHHHC-T---TCCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHH-HHHHHHc-C---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 34444444 4455544 2 34689999999 89999999999999654
No 188
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=27.53 E-value=70 Score=16.49 Aligned_cols=23 Identities=9% Similarity=0.234 Sum_probs=18.5
Q ss_pred hCCCCCHHHHHHHHHHHHHHHhh
Q 040518 39 LVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 39 ~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
.++|+|.++-++-++.+.+-+..
T Consensus 7 ~~~grs~e~k~~l~~~i~~~l~~ 29 (62)
T 1otf_A 7 IIEGRTDEQKETLIRQVSEAMAN 29 (62)
T ss_dssp EESCCCHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHHHHHHH
Confidence 35789999988888888887766
No 189
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=27.49 E-value=51 Score=17.12 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhcCCCCCCC
Q 040518 42 TKTIDEIKVHFKKLMEDLELIEFGFEPVSI 71 (81)
Q Consensus 42 gKS~~ev~~ry~~L~~dv~~Ie~g~v~~P~ 71 (81)
|-|..++-++...-..-|..+|.|....|.
T Consensus 16 glsq~~lA~~~gis~~~i~~~e~g~~~~~~ 45 (71)
T 1zug_A 16 KMTQTELATKAGVKQQSIQLIEAGVTKRPR 45 (71)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTTCCSSCS
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCChH
Confidence 455555555554445667788888777443
No 190
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=27.05 E-value=70 Score=19.42 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.0
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 33 WVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 33 WekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
...++..+|+..+.+|++--+.|+..
T Consensus 24 f~D~~k~~P~~k~r~vKK~~~~LV~E 49 (78)
T 1ucr_A 24 FNDFTDLFPDMKQREVKKILTALVND 49 (78)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHccccCHHHHHHHHHHHHhc
Confidence 56788999999999999999998865
No 191
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=26.73 E-value=98 Score=17.89 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 10 SWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 10 T~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
|.++...||.....- +--++..=+.||..+ |-|..+|+.=|++
T Consensus 12 ~~~Ql~~LE~~F~~~-~YPs~~er~eLA~~t-gLt~~qVkvWFqN 54 (66)
T 3nau_A 12 TKEQIAHLKASFLQS-QFPDDAEVYRLIEVT-GLARSEIKKWFSD 54 (66)
T ss_dssp CHHHHHHHHHHHHGG-GSCCHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh-CcCHHHhhHhccc
Confidence 678888999987665 444667789999999 9999999865554
No 192
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=26.46 E-value=75 Score=19.74 Aligned_cols=24 Identities=8% Similarity=0.081 Sum_probs=20.4
Q ss_pred hCCCCCHHHHHHHHHHHHHHHhhh
Q 040518 39 LVPTKTIDEIKVHFKKLMEDLELI 62 (81)
Q Consensus 39 ~vpgKS~~ev~~ry~~L~~dv~~I 62 (81)
.++|||.++-++-.+.+.+-+...
T Consensus 67 i~~GRs~eqK~~L~~~v~~~l~~~ 90 (125)
T 1otg_A 67 IGAGRSLESRQQAGEMLFELIKTH 90 (125)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999888888888764
No 193
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=26.36 E-value=53 Score=16.94 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhcCCCCCCC
Q 040518 42 TKTIDEIKVHFKKLMEDLELIEFGFEPVSI 71 (81)
Q Consensus 42 gKS~~ev~~ry~~L~~dv~~Ie~g~v~~P~ 71 (81)
|-|..++-++...-..-|..+|.|...++.
T Consensus 14 glsq~~lA~~~gis~~~i~~~e~g~~~~~~ 43 (69)
T 1r69_A 14 GLNQAELAQKVGTTQQSIEQLENGKTKRPR 43 (69)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTTSCSSCT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCCCCCch
Confidence 445555555444445567778888777543
No 194
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Probab=26.25 E-value=1.8e+02 Score=20.77 Aligned_cols=42 Identities=7% Similarity=0.147 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 9 WSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 9 WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
-|.++.++++.++... ..-|+..-||.+..+|-...+..+.+
T Consensus 269 ~~~~~~~~~~~v~~a~--------~~~~~~~~pG~~~~~i~~~~~~~~~~ 310 (402)
T 1kp0_A 269 VBDASLZIWZKNTAVH--------RRGLZLIKPGARCKDIASELNBMYRZ 310 (402)
T ss_dssp CCHHHHHHHHHHHHHH--------HHHHHHCCTTCBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--------HHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 5788888999888766 67788999999999998777766654
No 195
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center for structural genomics of infectious DISE; HET: SO4; 2.89A {Bacillus anthracis}
Probab=26.22 E-value=1.5e+02 Score=22.11 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
+..|.++.++++..+..+ ..-|++.-||.+..+|-......+..
T Consensus 276 G~~s~~~~~~y~~vl~a~--------~~~i~~~kpG~~~~di~~~a~~~i~~ 319 (427)
T 3ig4_A 276 GTFSSRQKQIYNIVLNAL--------KETTEIIKPGLKFAALNEHAKKVLAE 319 (427)
T ss_dssp SCCCHHHHHHHHHHHHHH--------HHHHHTCCTTCBTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH--------HHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 357999999999999777 56889999999999998777766654
No 196
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=26.19 E-value=99 Score=17.78 Aligned_cols=46 Identities=11% Similarity=0.087 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHh----hccCCCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 7 KQWSWEENKAFENGVAL----YYKEGQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~----~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
...|.++...||..... . +.-+...=+.||..+ |-+..+|+-=|++
T Consensus 22 t~ft~~Ql~~Le~~f~~~~~~~-~yp~~~~r~~La~~l-gL~~~~VkvWFqN 71 (80)
T 1wh5_A 22 TKFTAEQKERMLALAERIGWRI-QRQDDEVIQRFCQET-GVPRQVLKVWLHN 71 (80)
T ss_dssp CCCCHHHHHHHHHHHHHHTSCC-CTTTHHHHHHHHHHS-CCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccCcC-CCcCHHHHHHHHHHh-CCCcccccCCccc
Confidence 46899999999998766 2 223445668899999 8999998876654
No 197
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=26.14 E-value=81 Score=17.87 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=25.8
Q ss_pred chHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 30 DEEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 30 ~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
+-.+..||..+ |.|..-|+.+....+..++.
T Consensus 38 ~~s~~EIA~~l-gis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 38 PKTLEEVGQYF-NVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp CCCHHHHHHHH-TCCHHHHHHHHHHHHHHHBT
T ss_pred CCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 34689999999 89999999888877777765
No 198
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=26.05 E-value=47 Score=19.39 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=28.3
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHH
Q 040518 15 KAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFK 53 (81)
Q Consensus 15 k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~ 53 (81)
.+|+.-|..+ +-...-.|+.||+.-.|-|..|+..-.+
T Consensus 18 ~IL~~~l~~~-~l~~dvdl~~LA~~T~G~SGADL~~l~~ 55 (86)
T 2krk_A 18 DILKIHSRKM-NLTRGINLRKIAELMPGASGAEVKGVCT 55 (86)
T ss_dssp HHHHHHTTTS-EECTTCCCHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHcCC-CCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 3666667776 6444456999999999999999876433
No 199
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=25.97 E-value=48 Score=18.88 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 040518 43 KTIDEIKVHFKKLMEDLE 60 (81)
Q Consensus 43 KS~~ev~~ry~~L~~dv~ 60 (81)
-|.++|+++|+.|..--.
T Consensus 19 a~~~~Ik~~yr~Lm~~nh 36 (65)
T 2guz_B 19 LNMDKINNRFNYLFEVND 36 (65)
T ss_dssp CSHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 488999999999986543
No 200
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=25.76 E-value=1e+02 Score=17.67 Aligned_cols=49 Identities=10% Similarity=-0.026 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHh---hccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 040518 7 KQWSWEENKAFENGVAL---YYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLME 57 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~---~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~ 57 (81)
...|.++...||..+.. . |--+...=..||..+ |-|..+|..=|+.--.
T Consensus 7 ~rft~~q~~~Le~~f~~h~~~-~yP~~~~r~~La~~~-gLt~~qV~~WFqNrR~ 58 (83)
T 1le8_B 7 HRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT-SLSRIQIKNWVAARRA 58 (83)
T ss_dssp CCCCHHHHHHHHHHHHHTSSS-CCCCHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHHH-CCCHHHcccccHHHHc
Confidence 44899999999999987 4 433445557889988 8999999877665443
No 201
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=25.39 E-value=56 Score=19.78 Aligned_cols=59 Identities=22% Similarity=0.146 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHhhc---c--CCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCCC
Q 040518 9 WSWEENKAFENGVALYY---K--EGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEFGFEP 68 (81)
Q Consensus 9 WT~eE~k~fE~aL~~~~---p--~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~Ie~g~v~ 68 (81)
.+.++.+.+..++..+. . .-++.+-..+=... |-|..++-++..--..-|.++|+|...
T Consensus 47 ~d~e~~~~~~~~~~e~~r~~~~~~~~~~~l~~~R~~~-glsq~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 47 MNKEESDAFMAQVKAFRASVNAETVAPEFIVKVRKKL-SLTQKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHT-TCCHHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred ecHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHc-CCCHHHHHHHHCCCHHHHHHHHCCCCC
Confidence 56677776666665551 1 12456666666666 788888877776666778889999654
No 202
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis}
Probab=25.37 E-value=1.8e+02 Score=20.48 Aligned_cols=43 Identities=7% Similarity=-0.024 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 8 QWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 8 ~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
.-|.++.++++.++..+ ..-|++.-||.+..+|-...+..+.+
T Consensus 235 ~~~~~~~~~~~~v~~a~--------~~~~~~~~pG~~~~~i~~~~~~~~~~ 277 (356)
T 3q6d_A 235 EPSDKLKEIYNIVLEAQ--------LRGVNGIKAGLTGREADALTRDYITE 277 (356)
T ss_dssp CCCHHHHHHHHHHHHHH--------HHHHHHCCTTCBHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH--------HHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 35788888999888777 45788889999999998877776664
No 203
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=25.36 E-value=63 Score=18.05 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 040518 42 TKTIDEIKVHFKKLMEDL 59 (81)
Q Consensus 42 gKS~~ev~~ry~~L~~dv 59 (81)
+-|..+|+.+|+.|....
T Consensus 26 ~a~~~eIk~ayr~l~~~~ 43 (71)
T 2guz_A 26 TLTKKKLKEVHRKIMLAN 43 (71)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 578999999999998754
No 204
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=25.29 E-value=1e+02 Score=17.50 Aligned_cols=46 Identities=9% Similarity=0.128 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHHhhccC-CCchHHHHHHHhCCCCCHHHHHHHHHH
Q 040518 7 KQWSWEENKAFENGVALYYKE-GQDEEWVKIHSLVPTKTIDEIKVHFKK 54 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~-~~~~RWekIA~~vpgKS~~ev~~ry~~ 54 (81)
+.=..++...||...... .. -+..+=..||..+ |-|..+|+-=|+.
T Consensus 5 ~~~~~~~~~~LE~~F~~~-~~yp~~~~r~~LA~~l-~LterQVkvWFqN 51 (64)
T 1x2m_A 5 SSGTAQPNAILEKVFTAI-TKHPDEKRLEGLSKQL-DWDVRSIQRWFRQ 51 (64)
T ss_dssp SCCSSCHHHHHHHHHHTT-CSSCCHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHc-CCCcCHHHHHHHHHHh-CCCHHHHHHHHHH
Confidence 334567889999998432 11 2445667799999 8999999876654
No 205
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=25.19 E-value=94 Score=17.17 Aligned_cols=50 Identities=8% Similarity=-0.048 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHhhc--cCCCchHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 040518 7 KQWSWEENKAFENGVALYY--KEGQDEEWVKIHSLVPTKTIDEIKVHFKKLME 57 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~--p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~ 57 (81)
+..|.++-.+|+..+..|. |--+...=+.||..+ |-|..+|+.=|+.--.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~-~l~~~qV~~WFqNrR~ 54 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDT-GLTILQVNNWFINARR 54 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh-CcCHHHhhhhhHHHHH
Confidence 3578999999999998331 333455568899888 8999999866655433
No 206
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=25.19 E-value=1.3e+02 Score=19.81 Aligned_cols=45 Identities=13% Similarity=0.025 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 040518 8 QWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLE 60 (81)
Q Consensus 8 ~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~ 60 (81)
.=|+.|..+|.-... |. .-..||..+ |-|..-|+.|...+.+.+.
T Consensus 175 ~Lt~~e~~vl~~~~~-----g~--s~~eIa~~l-~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 175 MLSPREMLCLVWASK-----GK--TASVTANLT-GINARTVQHYLDKARAKLD 219 (236)
T ss_dssp SCCHHHHHHHHHHHT-----TC--CHHHHHHHH-CCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc-----CC--CHHHHHHHH-CcCHHHHHHHHHHHHHHhC
Confidence 467778877755432 22 246799999 8999999999888877664
No 207
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 2.20A {Mycobacterium ulcerans}
Probab=25.04 E-value=1.9e+02 Score=20.90 Aligned_cols=41 Identities=10% Similarity=0.149 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 10 SWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 10 T~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
|.++.++++.++..+ ..-|++.-||.+..+|-...+..+++
T Consensus 257 ~~~~~~~~~~v~~a~--------~~~~~~~~pG~~~~~v~~~~~~~~~~ 297 (378)
T 4ege_A 257 SPDVAQQYSALQRAQ--------RAAVDAVRPGVTAAQVDAAARDVLAD 297 (378)
T ss_dssp CHHHHHHHHHHHHHH--------HHHHHHCCTTCBHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH--------HHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 778888998888777 56788899999999998887776654
No 208
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics center for infectious DI protease, hydrolase; 2.15A {Mycobacterium abscessus}
Probab=24.97 E-value=1.7e+02 Score=20.19 Aligned_cols=41 Identities=7% Similarity=0.000 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHH
Q 040518 8 QWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLM 56 (81)
Q Consensus 8 ~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~ 56 (81)
.-|.++.++++.++... ..-|+..-||.+..+|-...+..+
T Consensus 145 ~~~~~~~~~~~~v~~a~--------~~~i~~~kpG~~~~~i~~~~~~~~ 185 (286)
T 3tav_A 145 TVIPSDEALSEATRLSM--------EAGIAAMIPGNRLTDVSHAIELGT 185 (286)
T ss_dssp SCCHHHHHHHHHHHHHH--------HHHHHTCCTTCBHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH--------HHHHHHhcCCCCHHHHHHHHHHHH
Confidence 46888889999888776 567889999999999988877777
No 209
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=24.86 E-value=1.4e+02 Score=18.91 Aligned_cols=26 Identities=4% Similarity=0.160 Sum_probs=22.7
Q ss_pred hHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 040518 31 EEWVKIHSLVPTKTIDEIKVHFKKLME 57 (81)
Q Consensus 31 ~RWekIA~~vpgKS~~ev~~ry~~L~~ 57 (81)
..-+.||+.+ |.|..+|.+.-+.|++
T Consensus 52 ps~~~LA~~~-~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 52 PTPNQLQEGM-SISVEECTNRLRMFIQ 77 (135)
T ss_dssp CCHHHHHTTS-SSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3578999999 8999999999988876
No 210
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=24.78 E-value=1.6e+02 Score=19.76 Aligned_cols=56 Identities=4% Similarity=-0.101 Sum_probs=39.1
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCCCCCCC
Q 040518 15 KAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELIEFGFEPVSID 72 (81)
Q Consensus 15 k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~Ie~g~v~~P~~ 72 (81)
.+.+.+..+- +.-++.|...+-..- |-|..++-++...-..-+..+|.|.-++|..
T Consensus 78 ~LY~~~~~~~-~~~s~~~lk~lR~~~-glTQ~elA~~LGvsr~tis~yE~G~r~iP~~ 133 (170)
T 2auw_A 78 NVYAWAKEQA-GEVSHEMFGDWMHRN-NLSLTTAAEALGISRRMVSYYRTAHKIIPRT 133 (170)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHT-TCCHHHHHHHHTSCHHHHHHHHTTSSCCCHH
T ss_pred HHHHhhhhhc-cCCCcHHHHHHHHHc-CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHH
Confidence 3455555443 334566666666666 7888888888877788888999998777753
No 211
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1
Probab=24.73 E-value=2e+02 Score=20.80 Aligned_cols=42 Identities=10% Similarity=0.139 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 9 WSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 9 WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
-|.++.++++.++... ..-|++.-||.+..+|-......+.+
T Consensus 269 ~~~~~~~~y~~v~~a~--------~~~i~~~~pG~~~~~v~~~~~~~~~~ 310 (401)
T 1chm_A 269 CSDDHLRLWQVNVEVH--------EAGLKLIKPGARCSDIARELNEIFLK 310 (401)
T ss_dssp CCHHHHHHHHHHHHHH--------HHHHHHCCTTCBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--------HHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 5788889999998777 56889999999999987666555444
No 212
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=24.66 E-value=95 Score=17.03 Aligned_cols=54 Identities=7% Similarity=-0.021 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
....|.++...||.....- +--+...=..||..+ |-|..+|+.=|++--...+.
T Consensus 13 Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~kk 66 (75)
T 2m0c_A 13 RTTFTSYQLEELEKVFQKT-HYPDVYAREQLAMRT-DLTEARVQVWFQNRRAKWRK 66 (75)
T ss_dssp SCSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh-CCCHHHHHHHhHHHHHHHHH
Confidence 3468999999999987654 333334446889888 89999998877765544433
No 213
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.54 E-value=60 Score=18.29 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 040518 41 PTKTIDEIKVHFKKLMEDL 59 (81)
Q Consensus 41 pgKS~~ev~~ry~~L~~dv 59 (81)
++-|..+|++.|+.|+...
T Consensus 19 ~~as~~eIk~ayr~l~~~~ 37 (82)
T 2ej7_A 19 RQASSEAIKKAYRKLALKW 37 (82)
T ss_dssp TTCCHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 4578999999999987543
No 214
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=24.50 E-value=95 Score=19.61 Aligned_cols=31 Identities=6% Similarity=0.234 Sum_probs=20.7
Q ss_pred HHHHHHhhccCCCchHHHHHHHhCCCCCHHHHH
Q 040518 17 FENGVALYYKEGQDEEWVKIHSLVPTKTIDEIK 49 (81)
Q Consensus 17 fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~ 49 (81)
+...+..+ -...+..|..+|..| |-|..+|.
T Consensus 5 L~~~f~~I-a~~lG~~Wk~LAR~L-Glse~dId 35 (122)
T 3ezq_B 5 LCAAFNVI-CDNVGKDWRRLARQL-KVSDTKID 35 (122)
T ss_dssp HHHHHHHH-HTTCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHH-HHhhhhhHHHHHHHh-CCCHHHHH
Confidence 44444444 445567899999999 77766543
No 215
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Probab=24.43 E-value=2e+02 Score=20.88 Aligned_cols=42 Identities=19% Similarity=0.082 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 040518 10 SWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDL 59 (81)
Q Consensus 10 T~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv 59 (81)
|.++.++++.++..+ ..-|++.-||.+..+|-...+..+.+-
T Consensus 305 ~~~~~~~y~~v~~a~--------~~~~~~~~pG~~~~~v~~~~~~~~~~~ 346 (444)
T 3cb6_A 305 DSEQQKNYSFLVALQ--------KKLFEYCRDGAVIGDIYTKILGLIRAK 346 (444)
T ss_dssp CHHHHHHHHHHHHHH--------HHHHHHCSTTCBHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH--------HHHHHHcCCCCcHHHHHHHHHHHHHhh
Confidence 778888999888776 577888999999999988887777664
No 216
>3f5t_A NS1, nonstructural protein 1; H5N1, HOST-virus interaction, interferon ANT system evasion, nucleus, RNA-binding; 2.70A {Influenza virus}
Probab=24.31 E-value=75 Score=22.30 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=17.9
Q ss_pred hCCCCCHHHHHHHHHHHHHHHh
Q 040518 39 LVPTKTIDEIKVHFKKLMEDLE 60 (81)
Q Consensus 39 ~vpgKS~~ev~~ry~~L~~dv~ 60 (81)
.+||.|.++|++.--.|+--+.
T Consensus 160 slpght~edvknaigvliggle 181 (215)
T 3f5t_A 160 SLPGHTGEDVKNAIGVLIGGLE 181 (215)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHhHHheeccee
Confidence 3899999999999888876543
No 217
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.07 E-value=69 Score=17.90 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 040518 41 PTKTIDEIKVHFKKLMEDL 59 (81)
Q Consensus 41 pgKS~~ev~~ry~~L~~dv 59 (81)
++-|..+|++.|+.|+...
T Consensus 17 ~~a~~~~Ik~ayr~l~~~~ 35 (79)
T 2dn9_A 17 RNASQKEIKKAYYQLAKKY 35 (79)
T ss_dssp TTCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 4578999999999998654
No 218
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=24.07 E-value=70 Score=17.68 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 040518 41 PTKTIDEIKVHFKKLMEDL 59 (81)
Q Consensus 41 pgKS~~ev~~ry~~L~~dv 59 (81)
++-|..+|++.|+.|....
T Consensus 18 ~~a~~~eIk~ayr~l~~~~ 36 (73)
T 2och_A 18 PDASDNELKKAYRKMALKF 36 (73)
T ss_dssp TTCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 4678999999999998654
No 219
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=23.87 E-value=52 Score=17.90 Aligned_cols=28 Identities=11% Similarity=-0.018 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhcCCCCC
Q 040518 42 TKTIDEIKVHFKKLMEDLELIEFGFEPV 69 (81)
Q Consensus 42 gKS~~ev~~ry~~L~~dv~~Ie~g~v~~ 69 (81)
|-|..++-++...-..-|..||.|...+
T Consensus 27 gltq~elA~~~gis~~~is~~e~g~~~~ 54 (83)
T 3f6w_A 27 GITQKELAARLGRPQSFVSKTENAERRL 54 (83)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTTSSCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCCCCCC
Confidence 5566666555555556678888887654
No 220
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.61 E-value=69 Score=18.48 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 040518 41 PTKTIDEIKVHFKKLMEDL 59 (81)
Q Consensus 41 pgKS~~ev~~ry~~L~~dv 59 (81)
++-|..+|++.|+.|+...
T Consensus 17 ~~as~~eIk~ayr~l~~~~ 35 (88)
T 2ctr_A 17 KSASERQIKKAFHKLAMKY 35 (88)
T ss_dssp TTCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 4578999999999998654
No 221
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=23.61 E-value=1e+02 Score=17.09 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHhhccCCC-chHHHHHHHhCCCCCHHHHHH
Q 040518 10 SWEENKAFENGVALYYKEGQ-DEEWVKIHSLVPTKTIDEIKV 50 (81)
Q Consensus 10 T~eE~k~fE~aL~~~~p~~~-~~RWekIA~~vpgKS~~ev~~ 50 (81)
|.+..+.+.++. +-.. +.|=..+++.|-||+.+|++.
T Consensus 18 t~~~I~~il~aa----Gveve~~~~~~~~~~L~gk~i~elI~ 55 (58)
T 3a1y_A 18 NEENLKAVLQAA----GVEPEEARIKALVAALEGVNIDEVIE 55 (58)
T ss_dssp CHHHHHHHHHHT----TCCCCHHHHHHHHHHHSSCCHHHHHH
T ss_pred CHHHHHHHHHHc----CCCccHHHHHHHHHHHCCCCHHHHHH
Confidence 555555555553 3333 445589999999999999874
No 222
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=23.55 E-value=50 Score=21.04 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=13.3
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhhhh
Q 040518 34 VKIHSLVPTKTIDEIKVHFKKLMEDLELIE 63 (81)
Q Consensus 34 ekIA~~vpgKS~~ev~~ry~~L~~dv~~Ie 63 (81)
..|+..||++..+++.++--.--.+|..||
T Consensus 17 ~~i~d~v~~~~WK~~aRkLGLse~~Id~Ie 46 (112)
T 1ich_A 17 YAVVENVPPLRWKEFVKRLGLSDHEIDRLE 46 (112)
T ss_dssp HHHHHHSCSTTHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 344444444444444444443334444444
No 223
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=23.43 E-value=1.2e+02 Score=17.60 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHh-----hccCCCchHHHHHHHhCCCCCHHHHHHHHH
Q 040518 7 KQWSWEENKAFENGVAL-----YYKEGQDEEWVKIHSLVPTKTIDEIKVHFK 53 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~-----~~p~~~~~RWekIA~~vpgKS~~ev~~ry~ 53 (81)
...|.++...|| +... . +.-+...=+.||..+ |-+..+|+-=|+
T Consensus 22 t~ft~~Ql~~Le-~F~~~~~w~~-~yp~~~~r~~La~~l-gL~e~qVkvWFq 70 (80)
T 1wh7_A 22 TKFTAEQKEKML-AFAERLGWRI-QKHDDVAVEQFCAET-GVRRQVLKIWMH 70 (80)
T ss_dssp CCCCHHHHHHHH-HHHHHHTSCC-CSSTTHHHHHHHHHS-CCCHHHHHHHHH
T ss_pred ccCCHHHHHHHH-HHHHHcCcCC-CCCCHHHHHHHHHHh-CcCcCccccccc
Confidence 468999999999 6666 2 222445568899999 899998876554
No 224
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=23.37 E-value=72 Score=17.75 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 040518 41 PTKTIDEIKVHFKKLMEDL 59 (81)
Q Consensus 41 pgKS~~ev~~ry~~L~~dv 59 (81)
++-|..+|++.|+.|+...
T Consensus 13 ~~as~~~Ik~ayr~l~~~~ 31 (77)
T 1hdj_A 13 RGASDEEIKRAYRRQALRY 31 (77)
T ss_dssp TTCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 3578999999999997654
No 225
>3eu6_A NS1, nonstructural protein 1; H5N1, cytoplasm, HOST-virus interaction, interferon antiviral system evasion, nucleus, RNA-binding; 2.70A {Influenza virus} PDB: 3f5t_A
Probab=23.11 E-value=81 Score=22.17 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=17.3
Q ss_pred hCCCCCHHHHHHHHHHHHHHH
Q 040518 39 LVPTKTIDEIKVHFKKLMEDL 59 (81)
Q Consensus 39 ~vpgKS~~ev~~ry~~L~~dv 59 (81)
.+||.|.++|++.---|+--+
T Consensus 160 slpght~edvknaigvliggl 180 (215)
T 3eu6_A 160 SLPGHTGEDVKNAIGVLIGGL 180 (215)
T ss_dssp CSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHhHhheecce
Confidence 389999999999888777654
No 226
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.08 E-value=67 Score=17.93 Aligned_cols=18 Identities=11% Similarity=0.292 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 040518 41 PTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 41 pgKS~~ev~~ry~~L~~d 58 (81)
++-|..+|++.|+.|+..
T Consensus 17 ~~as~~eIk~ayr~l~~~ 34 (78)
T 2ctp_A 17 RGASDEDLKKAYRRLALK 34 (78)
T ss_dssp TTCCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 457899999999998754
No 227
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=22.73 E-value=61 Score=16.44 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhcCCCCC
Q 040518 42 TKTIDEIKVHFKKLMEDLELIEFGFEPV 69 (81)
Q Consensus 42 gKS~~ev~~ry~~L~~dv~~Ie~g~v~~ 69 (81)
|-|..++-++...-..-|..+|.|...+
T Consensus 14 g~s~~~lA~~~gis~~~i~~~e~g~~~~ 41 (66)
T 2xi8_A 14 KISQSELAALLEVSRQTINGIEKNKYNP 41 (66)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTTSCCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCCCCC
Confidence 3344444443333344456677776543
No 228
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=22.70 E-value=1.4e+02 Score=18.38 Aligned_cols=29 Identities=7% Similarity=0.248 Sum_probs=22.8
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 040518 32 EWVKIHSLVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 32 RWekIA~~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
....||..+ |.|...|+.+.......++.
T Consensus 158 s~~EIA~~l-gis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 158 SYEEIAAIM-DCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp CHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 467899888 88988898888777666654
No 229
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=22.23 E-value=81 Score=20.58 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=21.1
Q ss_pred hCCCCCHHHHHHHHHHHHHHHhhh
Q 040518 39 LVPTKTIDEIKVHFKKLMEDLELI 62 (81)
Q Consensus 39 ~vpgKS~~ev~~ry~~L~~dv~~I 62 (81)
.++|||.++-++-.+.+.+-+...
T Consensus 89 ll~GRt~EqK~~L~e~v~~al~~~ 112 (146)
T 3e6q_A 89 ILDGRDAATRQALGESLCEVLAGA 112 (146)
T ss_dssp EETTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999888764
No 230
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=22.18 E-value=1.1e+02 Score=17.90 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHHHhh--hhcCC-CCCCCC
Q 040518 42 TKTIDEIKVHFKKLMEDLEL--IEFGF-EPVSID 72 (81)
Q Consensus 42 gKS~~ev~~ry~~L~~dv~~--Ie~g~-v~~P~~ 72 (81)
|+|.+|+....+..++..-. ++.|. +|.|..
T Consensus 43 G~T~eEA~~~a~eAl~~~le~~~e~g~~iP~p~~ 76 (87)
T 2dsy_A 43 GKSLKECEANLQAALEDWLLFLLSRGETPPPLGE 76 (87)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHHHTTCCCCCBTT
T ss_pred eCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Confidence 59999999888877776543 46664 555543
No 231
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=22.17 E-value=1.3e+02 Score=17.89 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Q 040518 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLELI 62 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~~I 62 (81)
...|.++...||...... +--+..+=..||..+ |-|..+|+-=|++=-...+..
T Consensus 16 k~~t~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l-gLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNS-SVLTDEELNRLRAQT-KLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh-CcChHHCeecccccchHHHHH
Confidence 368999999999997665 544666777899999 999999998777665444443
No 232
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Probab=21.92 E-value=2.2e+02 Score=20.22 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 9 WSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 9 WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
-|.++.++++.++..+ ..-|++.-||.+..+|-...+..+++
T Consensus 233 ~~~~~~~~~~~v~~a~--------~~~~~~~~pG~~~~~v~~~~~~~~~~ 274 (351)
T 1wy2_A 233 PNEKQKEIYEIVLEAQ--------KKAVESAKPGITAKELDSIARNIIAE 274 (351)
T ss_dssp CCHHHHHHHHHHHHHH--------HHHHHHCCTTCBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--------HHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 5788888999988777 56688889999999998888776655
No 233
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=21.88 E-value=1.5e+02 Score=18.40 Aligned_cols=44 Identities=11% Similarity=0.007 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 9 WSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 9 WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
-+.-+.+++ .+|... +. -.+..||+.+ |-|..-|.+|.+.|.+.
T Consensus 8 ld~~~~~il-~~L~~~-~~---~s~~ela~~l-g~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 8 LDKTDIKIL-QVLQEN-GR---LTNVELSERV-ALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp CCHHHHHHH-HHHHHC-TT---CCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHH-HHHHHc-CC---CCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 344454444 456555 32 3689999999 89999999999998654
No 234
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex; HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB: 3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A* 1y1n_A 1yj3_A 3ror_A
Probab=21.86 E-value=1.3e+02 Score=20.94 Aligned_cols=43 Identities=9% Similarity=0.063 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 8 QWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 8 ~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
.-|.++.++++.++..+ ..-|++.-||.+..+|-...+..+++
T Consensus 151 ~~~~~~~~~~~~v~~a~--------~~~i~~~kpG~~~~di~~~~~~~~~~ 193 (285)
T 3pka_A 151 DVADEHRLLVDRTREAT--------MRAINTVKPGRALSVIGRVIESYANR 193 (285)
T ss_dssp SCCHHHHHHHHHHHHHH--------HHHHHTCCTTSBTTHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH--------HHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 35788888999888776 56788899999999987766655543
No 235
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=21.52 E-value=80 Score=18.17 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=20.2
Q ss_pred hHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 040518 31 EEWVKIHSLVPTKTIDEIKVHFKKLMEDLE 60 (81)
Q Consensus 31 ~RWekIA~~vpgKS~~ev~~ry~~L~~dv~ 60 (81)
+-++.+. .=++-|..+|++.|+.|+....
T Consensus 18 d~y~iLg-v~~~as~~eIk~ayr~l~~~~H 46 (88)
T 2cug_A 18 DPYRVLG-VSRTASQADIKKAYKKLAREWH 46 (88)
T ss_dssp CHHHHHT-CCTTCCHHHHHHHHHHHHHHSC
T ss_pred CHHHHcC-cCCCCCHHHHHHHHHHHHHHHC
Confidence 4444444 3345799999999999987553
No 236
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation, XAA-Pro dipeptida dipeptidase, peptidase D, collagen degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Probab=21.47 E-value=2.7e+02 Score=21.02 Aligned_cols=44 Identities=5% Similarity=0.095 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 7 KQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 7 ~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
+..|.++.++++..+... ..-|++.-||.+..+|-......+.+
T Consensus 297 G~~s~~q~~~y~~v~~a~--------~~~i~~~kpG~~~~di~~~a~~~i~~ 340 (494)
T 2iw2_A 297 GKFTADQKAVYEAVLRSS--------RAVMGAMKPGVWWPDMHRLADRIHLE 340 (494)
T ss_dssp SCCCHHHHHHHHHHHHHH--------HHHHHHCCTTCBHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHH--------HHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 357899999999998777 67899999999999998777665543
No 237
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.40 E-value=1.2e+02 Score=17.11 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHH
Q 040518 6 QKQWSWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKL 55 (81)
Q Consensus 6 ~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L 55 (81)
...-|..+...||.+...- +--+...=..||..+ |-|..+|+-=|++=
T Consensus 8 ~~~~t~~ql~~LE~~F~~~-~yp~~~~r~~LA~~l-~Lte~qVqvWFqNR 55 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQ-KYLSAPERAHLAKNL-KLTETQVKIWFQNR 55 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh-CCChhheeecchhh
Confidence 3456889999999997655 433445557899999 89999998766543
No 238
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Probab=21.36 E-value=1.5e+02 Score=21.41 Aligned_cols=41 Identities=12% Similarity=0.060 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 10 SWEENKAFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 10 T~eE~k~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
|.++.++++.++... ..-|++.-||.+..+|-+..+..+.+
T Consensus 187 ~~~~~~l~~~v~~a~--------~~ai~~~kPG~~~~dI~~~~~~~~~~ 227 (329)
T 2b3h_A 187 DDGARKLVQTTYECL--------MQAIDAVKPGVRYRELGNIIQKHAQA 227 (329)
T ss_dssp CHHHHHHHHHHHHHH--------HHHHHTCCTTCBTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH--------HHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 778888888888766 67889999999999988777666553
No 239
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=21.20 E-value=62 Score=21.56 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCCCHHH---HHHHHHHHHHHHhh
Q 040518 32 EWVKIHSLVPTKTIDE---IKVHFKKLMEDLEL 61 (81)
Q Consensus 32 RWekIA~~vpgKS~~e---v~~ry~~L~~dv~~ 61 (81)
.|.+|++.||+-+..+ .+.++..+..-|..
T Consensus 11 dW~~l~~~v~~~~~a~~~afK~~~d~~~~~v~~ 43 (160)
T 2cly_B 11 DWVAFGEIIPRNQKAVANSLKSWNETLTSRLAT 43 (160)
T ss_dssp CHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4999999999966654 46777777666655
No 240
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=21.11 E-value=1.5e+02 Score=18.07 Aligned_cols=38 Identities=3% Similarity=-0.063 Sum_probs=28.4
Q ss_pred HHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 040518 16 AFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMED 58 (81)
Q Consensus 16 ~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~d 58 (81)
.+..+|... + +-....||+.+ |-|..-|.+|.+.|.+.
T Consensus 9 ~il~~L~~~-~---~~s~~ela~~l-g~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 9 NIIEELKKD-S---RLSMRELGRKI-KLSPPSVTERVRQLESF 46 (144)
T ss_dssp HHHHHHHHC-S---CCCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc-C---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 344456544 2 24588999999 89999999999998653
No 241
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=21.03 E-value=72 Score=18.95 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 040518 42 TKTIDEIKVHFKKLMEDL 59 (81)
Q Consensus 42 gKS~~ev~~ry~~L~~dv 59 (81)
+-|..+|++.|+.|+...
T Consensus 14 ~as~~eIk~ayr~l~~~~ 31 (103)
T 1bq0_A 14 TAEEREIRKAYKRLAMKY 31 (103)
T ss_dssp SCCHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 468999999999997544
No 242
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=20.94 E-value=28 Score=20.66 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=21.1
Q ss_pred hHHHHHHHhCCC-CCHHHHHHHHHHHHHHHhhhhcCCCCC
Q 040518 31 EEWVKIHSLVPT-KTIDEIKVHFKKLMEDLELIEFGFEPV 69 (81)
Q Consensus 31 ~RWekIA~~vpg-KS~~ev~~ry~~L~~dv~~Ie~g~v~~ 69 (81)
.+|..+|..-|. .|..++..+-+.++.++..++...+..
T Consensus 5 ~~~~~~~~~~~~~~t~~~i~~~l~~iia~~l~~~~~~i~~ 44 (97)
T 3ejb_A 5 HHHHHSSGLVPRGSHMSTIEERVKKIIGEQLGVKQEEVTN 44 (97)
T ss_dssp -------------CCCCCHHHHHHHHHHHHSCCCTTTSCT
T ss_pred cCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCcCHHHCCC
Confidence 378888888877 888899999999988887776555543
No 243
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=20.90 E-value=64 Score=19.08 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 040518 44 TIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 44 S~~ev~~ry~~L~~dv~~ 61 (81)
|.++++++|..+.+||+.
T Consensus 28 ~~~~l~~~f~~~~edl~~ 45 (104)
T 1jmt_A 28 SDVEMQEHYDEFFEEVFT 45 (104)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 567889999999999987
No 244
>1wn4_A Vontr protein; helix, plant protein; NMR {Synthetic} SCOP: j.113.1.1
Probab=20.89 E-value=42 Score=16.66 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhc
Q 040518 14 NKAFENGVALYY 25 (81)
Q Consensus 14 ~k~fE~aL~~~~ 25 (81)
|-+||.||..|+
T Consensus 8 NplLEEALv~~a 19 (28)
T 1wn4_A 8 NHLLEEALVAFA 19 (28)
T ss_dssp THHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 468999999993
No 245
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=20.84 E-value=40 Score=20.15 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=29.7
Q ss_pred HHHHHHHhhccCCCchHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 040518 16 AFENGVALYYKEGQDEEWVKIHSLVPTKTIDEIKVHFKKLMEDLE 60 (81)
Q Consensus 16 ~fE~aL~~~~p~~~~~RWekIA~~vpgKS~~ev~~ry~~L~~dv~ 60 (81)
++.-||-.| .|.|.-.+|..+ ||+..+.++..+...+++.
T Consensus 13 IlvVaLlvf----GpkkLP~l~r~l-Gk~ir~fK~~~~~~~~e~~ 52 (78)
T 2l16_A 13 IFVIALIIF----GPSKLPEIGRAA-GRTLLEFKSATKSLVSGDE 52 (78)
T ss_dssp HHHHHHHHS----CTTTHHHHHHHH-HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhhee----CccHhHHHHHHH-HHHHHHHHHHHHHhHhhhh
Confidence 344566667 356888999999 8998888888777766654
No 246
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=20.67 E-value=98 Score=17.98 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 040518 40 VPTKTIDEIKVHFKKLMEDL 59 (81)
Q Consensus 40 vpgKS~~ev~~ry~~L~~dv 59 (81)
-++-|..+|++.|+.|+...
T Consensus 17 ~~~as~~eIk~ayr~l~~~~ 36 (92)
T 2o37_A 17 SPSANEQELKKGYRKAALKY 36 (92)
T ss_dssp CTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 34578999999999988655
No 247
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=20.63 E-value=45 Score=17.47 Aligned_cols=28 Identities=11% Similarity=-0.044 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHH--HHHHHHhhhhcCCCCC
Q 040518 42 TKTIDEIKVHFK--KLMEDLELIEFGFEPV 69 (81)
Q Consensus 42 gKS~~ev~~ry~--~L~~dv~~Ie~g~v~~ 69 (81)
|-|..++-++.. .-..-|..||+|...+
T Consensus 21 glsq~~lA~~~g~~is~~~i~~~e~g~~~~ 50 (71)
T 2ewt_A 21 GLSLHGVEEKSQGRWKAVVVGSYERGDRAV 50 (71)
T ss_dssp TCCHHHHHHHTTTSSCHHHHHHHHHTCSCC
T ss_pred CCCHHHHHHHHCCcCCHHHHHHHHCCCCCC
Confidence 445555444433 3334567788887553
No 248
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=20.40 E-value=60 Score=17.64 Aligned_cols=28 Identities=11% Similarity=-0.062 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhcCCCCC
Q 040518 42 TKTIDEIKVHFKKLMEDLELIEFGFEPV 69 (81)
Q Consensus 42 gKS~~ev~~ry~~L~~dv~~Ie~g~v~~ 69 (81)
|-|..++-++...-..-|..||+|...+
T Consensus 24 glsq~~lA~~~gis~~~i~~~e~g~~~~ 51 (82)
T 3s8q_A 24 GMTQEDLAYKSNLDRTYISGIERNSRNL 51 (82)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHhCcCHHHHHHHHCCCCCC
Confidence 6677777666665666788889997543
No 249
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=20.24 E-value=60 Score=17.17 Aligned_cols=28 Identities=11% Similarity=-0.032 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhcCCCCC
Q 040518 42 TKTIDEIKVHFKKLMEDLELIEFGFEPV 69 (81)
Q Consensus 42 gKS~~ev~~ry~~L~~dv~~Ie~g~v~~ 69 (81)
|-|..++-++...-..-|..||.|...+
T Consensus 23 glsq~~lA~~~gis~~~i~~~e~g~~~~ 50 (77)
T 2b5a_A 23 GVSQEELADLAGLHRTYISEVERGDRNI 50 (77)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTTCSCC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCC
Confidence 5565555555544455677788887643
No 250
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=20.23 E-value=1.6e+02 Score=17.85 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCchHHHHHHHh------------------CCC---CCHHHHHHHHHHHH
Q 040518 5 NQKQWSWEENKAFENGVALYYKEGQDEEWVKIHSL------------------VPT---KTIDEIKVHFKKLM 56 (81)
Q Consensus 5 s~~~WT~eE~k~fE~aL~~~~p~~~~~RWekIA~~------------------vpg---KS~~ev~~ry~~L~ 56 (81)
....||.++...||.....- +--+..+=+.||.. + | -|..+|+.=|+.--
T Consensus 12 ~Rt~ft~~Ql~~LE~~F~~~-~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~l-g~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 12 NRFKWGPASQQILFQAYERQ-KNPSKEERETLVEECNRAECIQRGVSPSQAQGL-GSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp -CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTT-GGGCCCHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhcccccccccccccccccc-CccccCcceeeeccHHHH
Confidence 34579999999999986655 43344555788988 6 6 88888887666543
No 251
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=20.03 E-value=1.2e+02 Score=17.78 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=18.3
Q ss_pred hCCCCCHHHHHHHHHHHHHHHhh
Q 040518 39 LVPTKTIDEIKVHFKKLMEDLEL 61 (81)
Q Consensus 39 ~vpgKS~~ev~~ry~~L~~dv~~ 61 (81)
.++|+|.++-++.++.+.+-+..
T Consensus 63 ~~~g~~~eqk~~l~~~i~~~l~~ 85 (113)
T 1hfo_A 63 SIGGIEPSRNRDHSAKLFDHLNT 85 (113)
T ss_dssp ESSSCSHHHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHHHH
Confidence 36789999988888888877765
Done!