BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040519
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKL 28
W+ IA LPG T+ +KN+WN+ IK+K+
Sbjct: 81 WAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKL 28
WS+IA +PG T+ IKN WN+ I +++
Sbjct: 76 WSVIAKLIPGRTDNAIKNRWNSSISKRI 103
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20
Structures
Length = 54
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKL 28
W+ IA LPG T+ IKN+WN+ +++K+
Sbjct: 27 WAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKL 28
W+ IA LPG T+ IKN+WN+ +++K+
Sbjct: 25 WAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKL 28
W+ IA LPG T+ IKN+WN+ +++K+
Sbjct: 132 WAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKL 28
W+ IA LPG T+ +KN+WN+ +++K+
Sbjct: 101 WAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKL 28
W+ IA LPG T+ IKN+WN+ +++K+
Sbjct: 78 WAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKL 28
W+ IA LPG T+ IKN+WN+ +++K+
Sbjct: 78 WAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLN 42
W++IA PG T+ IKN W T I KL G+ PQT + L
Sbjct: 84 WAIIAKFFPGRTDIHIKNRWVT-ISNKL---GI-PQTQQMLE 120
>pdb|3K4C|A Chain A, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|B Chain B, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|C Chain C, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|D Chain D, Pyranose 2-Oxidase H167aT169G MUTANT
Length = 623
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 9 PGSTNYKIKNYWNTHIKQKLLNHGLDP 35
PG++ K ++WN +K ++ H DP
Sbjct: 397 PGASTNKHPDWWNEKVKNHMMQHQEDP 423
>pdb|2IGN|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGO|A Chain A, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|B Chain B, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|D Chain D, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|C Chain C, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|E Chain E, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|F Chain F, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|H Chain H, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|G Chain G, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|3LSM|A Chain A, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3LSM|B Chain B, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3PL8|A Chain A, Pyranose 2-Oxidase H167a Complex With
3-Deoxy-3-Fluoro-Beta-D-Glucose
Length = 623
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 9 PGSTNYKIKNYWNTHIKQKLLNHGLDP 35
PG++ K ++WN +K ++ H DP
Sbjct: 397 PGASTNKHPDWWNEKVKNHMMQHQEDP 423
>pdb|2O18|A Chain A, Crystal Structure Of A Thiamine Biosynthesis Lipoprotein
Apbe, Northeast Strcutural Genomics Target Er559
pdb|2O18|B Chain B, Crystal Structure Of A Thiamine Biosynthesis Lipoprotein
Apbe, Northeast Strcutural Genomics Target Er559
pdb|2O18|C Chain C, Crystal Structure Of A Thiamine Biosynthesis Lipoprotein
Apbe, Northeast Strcutural Genomics Target Er559
pdb|2O18|D Chain D, Crystal Structure Of A Thiamine Biosynthesis Lipoprotein
Apbe, Northeast Strcutural Genomics Target Er559
Length = 340
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 11 STNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHN 46
ST+ +NY+ + K L+H +DPQT RP+ HN
Sbjct: 234 STSGSYRNYY--ELDGKRLSHVIDPQTGRPIE--HN 265
>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
Length = 623
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 9 PGSTNYKIKNYWNTHIKQKLLNHGLDP 35
PG++ K ++WN +K ++ H DP
Sbjct: 397 PGASTNKHPDWWNEKVKNHMMQHQEDP 423
>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
Length = 623
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 9 PGSTNYKIKNYWNTHIKQKLLNHGLDP 35
PG++ K ++WN +K ++ H DP
Sbjct: 397 PGASTNKHPDWWNEKVKNHMMQHQEDP 423
>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
Length = 623
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 9 PGSTNYKIKNYWNTHIKQKLLNHGLDP 35
PG++ K ++WN +K ++ H DP
Sbjct: 397 PGASTNKHPDWWNEKVKNHMMQHQEDP 423
>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
Length = 623
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 9 PGSTNYKIKNYWNTHIKQKLLNHGLDP 35
PG++ K ++WN +K ++ H DP
Sbjct: 397 PGASTNKHPDWWNEKVKNHMMQHQEDP 423
>pdb|3FDY|A Chain A, Pyranose 2-Oxidase Thermostable Triple Mutant,
T169gE542KV546C
Length = 623
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 9 PGSTNYKIKNYWNTHIKQKLLNHGLDP 35
PG++ K ++WN +K ++ H DP
Sbjct: 397 PGASTNKHPDWWNEKVKNHMMQHQEDP 423
>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
Length = 623
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 9 PGSTNYKIKNYWNTHIKQKLLNHGLDP 35
PG++ K ++WN +K ++ H DP
Sbjct: 397 PGASTNKHPDWWNEKVKNHMMQHQEDP 423
>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp
Length = 595
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 9 PGSTNYKIKNYWNTHIKQKLLNHGLDP 35
PG++ K ++WN +K ++ H DP
Sbjct: 369 PGASTNKHPDWWNEKVKNHMMQHQEDP 395
>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
Length = 623
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 9 PGSTNYKIKNYWNTHIKQKLLNHGLDP 35
PG++ K ++WN +K ++ H DP
Sbjct: 397 PGASTNKHPDWWNEKVKNHMMQHQEDP 423
>pdb|2IGM|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
Length = 623
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 9 PGSTNYKIKNYWNTHIKQKLLNHGLDP 35
PG++ K ++WN +K ++ H DP
Sbjct: 397 PGASTNKHPDWWNEKVKNHMMQHQEDP 423
>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp.,
Thermostability Mutant E542k
Length = 595
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 9 PGSTNYKIKNYWNTHIKQKLLNHGLDP 35
PG++ K ++WN +K ++ H DP
Sbjct: 369 PGASTNKHPDWWNEKVKNHMMQHQEDP 395
>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
Length = 623
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 9 PGSTNYKIKNYWNTHIKQKLLNHGLDP 35
PG++ K ++WN +K ++ H DP
Sbjct: 397 PGASTNKHPDWWNEKVKNHMMQHQEDP 423
>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
Length = 623
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 9 PGSTNYKIKNYWNTHIKQKLLNHGLDP 35
PG++ K ++WN +K ++ H DP
Sbjct: 397 PGASTNKHPDWWNEKVKNHMMQHQEDP 423
>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
Length = 623
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 9 PGSTNYKIKNYWNTHIKQKLLNHGLDP 35
PG++ K ++WN +K ++ H DP
Sbjct: 397 PGASTNKHPDWWNEKVKNHMMQHQEDP 423
>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
Length = 623
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 9 PGSTNYKIKNYWNTHIKQKLLNHGLDP 35
PG++ K ++WN +K ++ H DP
Sbjct: 397 PGASTNKHPDWWNEKVKNHMMQHQEDP 423
>pdb|3PND|A Chain A, Fad Binding By Apbe Protein From Salmonella Enterica: A
New Class Of Fad Binding Proteins
pdb|3PND|B Chain B, Fad Binding By Apbe Protein From Salmonella Enterica: A
New Class Of Fad Binding Proteins
pdb|3PND|C Chain C, Fad Binding By Apbe Protein From Salmonella Enterica: A
New Class Of Fad Binding Proteins
pdb|3PND|D Chain D, Fad Binding By Apbe Protein From Salmonella Enterica: A
New Class Of Fad Binding Proteins
Length = 337
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 11 STNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHN 46
ST+ +NY+ + K ++H +DPQT RP+ HN
Sbjct: 233 STSGSYRNYY--ELDGKRVSHVIDPQTGRPIE--HN 264
>pdb|2OZU|A Chain A, Crystal Structure Of Human Myst Histone Acetyltransferase
3 In Complex With Acetylcoenzyme A
Length = 284
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 38 HRPLNQIHNHNNFNKYTINNNEEIMHSSTHYQENLDLRA 76
H P N+I+ NN + + ++ N ST Y +NL L A
Sbjct: 68 HPPANEIYRKNNISVFEVDGN-----VSTIYCQNLCLLA 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,310,946
Number of Sequences: 62578
Number of extensions: 125574
Number of successful extensions: 383
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 40
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)