Query 040519
Match_columns 101
No_of_seqs 125 out of 804
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 09:14:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0048 Transcription factor, 99.4 2.8E-13 6.1E-18 103.6 3.8 40 1-40 84-123 (238)
2 PLN03212 Transcription repress 99.0 3E-10 6.5E-15 89.2 4.7 44 1-44 100-143 (249)
3 PLN03091 hypothetical protein; 99.0 1E-09 2.2E-14 92.0 5.6 47 1-47 89-135 (459)
4 smart00717 SANT SANT SWI3, AD 97.4 5.4E-05 1.2E-09 42.4 0.8 25 1-25 24-48 (49)
5 cd00167 SANT 'SWI3, ADA2, N-Co 97.2 0.00019 4.1E-09 39.7 1.3 23 1-23 22-44 (45)
6 PF00249 Myb_DNA-binding: Myb- 97.1 0.00012 2.6E-09 43.1 0.3 23 1-23 24-47 (48)
7 PF13921 Myb_DNA-bind_6: Myb-l 96.4 0.00079 1.7E-08 40.8 -0.2 25 1-25 20-44 (60)
8 PLN03212 Transcription repress 91.2 0.11 2.3E-06 41.4 1.3 29 1-29 48-77 (249)
9 PLN03091 hypothetical protein; 77.6 0.65 1.4E-05 39.8 -0.3 27 1-27 37-64 (459)
10 PF13837 Myb_DNA-bind_4: Myb/S 66.4 3.1 6.6E-05 26.3 1.0 30 1-31 37-70 (90)
11 KOG0048 Transcription factor, 62.2 3.1 6.8E-05 31.8 0.5 29 1-29 32-61 (238)
12 PF10545 MADF_DNA_bdg: Alcohol 61.2 6.7 0.00014 24.0 1.8 22 1-22 29-51 (85)
13 smart00595 MADF subfamily of S 60.9 7.4 0.00016 24.6 2.0 22 1-23 30-51 (89)
14 COG5147 REB1 Myb superfamily p 59.3 7.4 0.00016 33.9 2.3 29 1-29 94-122 (512)
15 COG5147 REB1 Myb superfamily p 54.6 3.7 8E-05 35.7 -0.3 29 1-29 43-71 (512)
16 PF13873 Myb_DNA-bind_5: Myb/S 52.8 11 0.00023 23.5 1.7 22 1-22 41-67 (78)
17 PF12776 Myb_DNA-bind_3: Myb/S 35.0 27 0.00058 22.1 1.5 25 1-25 34-63 (96)
18 PF08281 Sigma70_r4_2: Sigma-7 28.0 47 0.001 18.9 1.7 23 2-25 30-52 (54)
19 PHA02291 hypothetical protein 26.6 28 0.00061 25.1 0.6 17 4-20 76-93 (132)
20 KOG0049 Transcription factor, 26.6 57 0.0012 30.1 2.6 28 1-28 383-410 (939)
21 PF11035 SnAPC_2_like: Small n 23.5 86 0.0019 26.2 2.9 21 2-22 48-68 (344)
No 1
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.38 E-value=2.8e-13 Score=103.58 Aligned_cols=40 Identities=70% Similarity=1.297 Sum_probs=36.3
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRP 40 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~~~~~~~~~~~p 40 (101)
|++||++|||||||+||||||+++|||+.+.+.++.+..+
T Consensus 84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~~~~ 123 (238)
T KOG0048|consen 84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPSTHRP 123 (238)
T ss_pred HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCcccc
Confidence 9999999999999999999999999999998877776444
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.02 E-value=3e-10 Score=89.18 Aligned_cols=44 Identities=66% Similarity=1.292 Sum_probs=41.5
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQI 44 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~~~~~~~~~~~p~~~~ 44 (101)
|+.||++|||||||.|||||++++++++...++++.+++|....
T Consensus 100 Ws~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~~~ 143 (249)
T PLN03212 100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDAN 143 (249)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999987653
No 3
>PLN03091 hypothetical protein; Provisional
Probab=98.95 E-value=1e-09 Score=91.97 Aligned_cols=47 Identities=51% Similarity=1.009 Sum_probs=44.0
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNH 47 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~~~~~~~~~~~p~~~~~~~ 47 (101)
|++||++||||||+.|||||+..+||+++..++++.+|+|.......
T Consensus 89 WskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~E~~ 135 (459)
T PLN03091 89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENG 135 (459)
T ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccccc
Confidence 99999999999999999999999999999999999999999876544
No 4
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.41 E-value=5.4e-05 Score=42.42 Aligned_cols=25 Identities=40% Similarity=0.804 Sum_probs=22.6
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIK 25 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~ 25 (101)
|..||..||+||+.+|+++|...++
T Consensus 24 w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 24 WEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 8899999999999999999997543
No 5
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.18 E-value=0.00019 Score=39.68 Aligned_cols=23 Identities=35% Similarity=0.736 Sum_probs=21.3
Q ss_pred ChhhhCcCCCCChhHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTH 23 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~ 23 (101)
|..||..+|+||..+|+++|+..
T Consensus 22 w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 22 WEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred HHHHHhHcCCCCHHHHHHHHHHh
Confidence 88999999999999999999864
No 6
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.14 E-value=0.00012 Score=43.10 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=21.6
Q ss_pred ChhhhCcCC-CCChhHHHHHHHHH
Q 040519 1 WSLIAGRLP-GSTNYKIKNYWNTH 23 (101)
Q Consensus 1 Ws~IA~~Lp-GRTdN~VKN~wn~~ 23 (101)
|..||.+|| |||...+++||..+
T Consensus 24 W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 24 WKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp HHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhh
Confidence 889999999 99999999999875
No 7
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=96.39 E-value=0.00079 Score=40.77 Aligned_cols=25 Identities=32% Similarity=0.695 Sum_probs=21.1
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIK 25 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~ 25 (101)
|..||.+|+.||..+|++||...|+
T Consensus 20 W~~Ia~~l~~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 20 WKKIAEHLGNRTPKQCRNRWRNHLR 44 (60)
T ss_dssp HHHHHHHSTTS-HHHHHHHHHHTTS
T ss_pred HHHHHHHHCcCCHHHHHHHHHHHCc
Confidence 8899999966999999999998553
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=91.16 E-value=0.11 Score=41.37 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=25.1
Q ss_pred ChhhhCcC-CCCChhHHHHHHHHHHHHHHH
Q 040519 1 WSLIAGRL-PGSTNYKIKNYWNTHIKQKLL 29 (101)
Q Consensus 1 Ws~IA~~L-pGRTdN~VKN~wn~~l~kk~~ 29 (101)
|..||+++ +|||+...+.||..+|+-.+.
T Consensus 48 W~~IAk~~g~gRT~KQCReRW~N~L~P~I~ 77 (249)
T PLN03212 48 WRSLPKRAGLLRCGKSCRLRWMNYLRPSVK 77 (249)
T ss_pred HHHHHHhhhcCCCcchHHHHHHHhhchhcc
Confidence 89999998 799999999999988765543
No 9
>PLN03091 hypothetical protein; Provisional
Probab=77.61 E-value=0.65 Score=39.78 Aligned_cols=27 Identities=11% Similarity=0.293 Sum_probs=23.0
Q ss_pred ChhhhCcC-CCCChhHHHHHHHHHHHHH
Q 040519 1 WSLIAGRL-PGSTNYKIKNYWNTHIKQK 27 (101)
Q Consensus 1 Ws~IA~~L-pGRTdN~VKN~wn~~l~kk 27 (101)
|..||+++ +||++...+.||..+|...
T Consensus 37 Ws~IAk~~g~gRT~KQCRERW~NyLdP~ 64 (459)
T PLN03091 37 WSSVPKQAGLQRCGKSCRLRWINYLRPD 64 (459)
T ss_pred HHHHhhhhccCcCcchHhHHHHhccCCc
Confidence 89999988 6999999999999665443
No 10
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=66.37 E-value=3.1 Score=26.25 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=19.4
Q ss_pred ChhhhCcC----CCCChhHHHHHHHHHHHHHHHhC
Q 040519 1 WSLIAGRL----PGSTNYKIKNYWNTHIKQKLLNH 31 (101)
Q Consensus 1 Ws~IA~~L----pGRTdN~VKN~wn~~l~kk~~~~ 31 (101)
|..||..| ..||...++++|+. |++++...
T Consensus 37 w~~Ia~~l~~~G~~rt~~qc~~Kw~~-L~~~Yk~~ 70 (90)
T PF13837_consen 37 WKEIAEELAEHGYNRTPEQCRNKWKN-LKKKYKKI 70 (90)
T ss_dssp HHHHHHHHHHHC----HHHHHHHHHH-HHHHHHCS
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHH
Confidence 55677666 47999999999999 55666543
No 11
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=62.19 E-value=3.1 Score=31.80 Aligned_cols=29 Identities=7% Similarity=0.088 Sum_probs=25.2
Q ss_pred ChhhhCcCC-CCChhHHHHHHHHHHHHHHH
Q 040519 1 WSLIAGRLP-GSTNYKIKNYWNTHIKQKLL 29 (101)
Q Consensus 1 Ws~IA~~Lp-GRTdN~VKN~wn~~l~kk~~ 29 (101)
|+.|++.++ ||++-..+-||.-+|+--++
T Consensus 32 W~~i~k~~gl~R~GKSCRlRW~NyLrP~ik 61 (238)
T KOG0048|consen 32 GTALPKLAGLRRCGKSCRLRWTNYLRPDLK 61 (238)
T ss_pred cchhhhhcCCCccchHHHHHhhcccCCCcc
Confidence 899999999 99999999999887766543
No 12
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=61.19 E-value=6.7 Score=23.97 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=18.1
Q ss_pred ChhhhCcCCC-CChhHHHHHHHH
Q 040519 1 WSLIAGRLPG-STNYKIKNYWNT 22 (101)
Q Consensus 1 Ws~IA~~LpG-RTdN~VKN~wn~ 22 (101)
|..||..|.+ -+.+.|+.+|..
T Consensus 29 w~~Ia~~l~~~~~~~~~~~~w~~ 51 (85)
T PF10545_consen 29 WQEIARELGKEFSVDDCKKRWKN 51 (85)
T ss_pred HHHHHHHHccchhHHHHHHHHHH
Confidence 7889999953 577889999997
No 13
>smart00595 MADF subfamily of SANT domain.
Probab=60.93 E-value=7.4 Score=24.60 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.7
Q ss_pred ChhhhCcCCCCChhHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTH 23 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~ 23 (101)
|..||..|.. |..+++-+|+.+
T Consensus 30 W~~Ia~~l~~-~~~~~~~kw~~L 51 (89)
T smart00595 30 WEEIAEELGL-SVEECKKRWKNL 51 (89)
T ss_pred HHHHHHHHCc-CHHHHHHHHHHH
Confidence 7889998855 999999999963
No 14
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=59.32 E-value=7.4 Score=33.88 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=26.0
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLL 29 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~ 29 (101)
|+.||..+||||+....++|...+.....
T Consensus 94 wstia~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 94 WSTIADYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence 89999999999999999999987776654
No 15
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=54.58 E-value=3.7 Score=35.67 Aligned_cols=29 Identities=38% Similarity=0.643 Sum_probs=25.0
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLL 29 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~ 29 (101)
|+.||..|.-|+.+.+++||+.++-..+.
T Consensus 43 ws~vas~~~~~~~kq~~~rw~~~lnp~lk 71 (512)
T COG5147 43 WSKVASLLISSTGKQSSNRWNNHLNPQLK 71 (512)
T ss_pred HHHHHHHhcccccccccchhhhhhchhcc
Confidence 89999999999999999999877655544
No 16
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=52.77 E-value=11 Score=23.47 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=17.2
Q ss_pred ChhhhCcC-----CCCChhHHHHHHHH
Q 040519 1 WSLIAGRL-----PGSTNYKIKNYWNT 22 (101)
Q Consensus 1 Ws~IA~~L-----pGRTdN~VKN~wn~ 22 (101)
|..|+..| +.||...+|..|.-
T Consensus 41 W~~I~~~lN~~~~~~Rs~~~lkkkW~n 67 (78)
T PF13873_consen 41 WEEIAEELNALGPGKRSWKQLKKKWKN 67 (78)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 66777655 46899999999985
No 17
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=34.98 E-value=27 Score=22.14 Aligned_cols=25 Identities=40% Similarity=0.691 Sum_probs=15.5
Q ss_pred ChhhhCcC---CCC--ChhHHHHHHHHHHH
Q 040519 1 WSLIAGRL---PGS--TNYKIKNYWNTHIK 25 (101)
Q Consensus 1 Ws~IA~~L---pGR--TdN~VKN~wn~~l~ 25 (101)
|..|+..| +|. |...|||+|..+-+
T Consensus 34 w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 34 WNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 44555555 444 56779999987433
No 18
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=28.05 E-value=47 Score=18.91 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=14.6
Q ss_pred hhhhCcCCCCChhHHHHHHHHHHH
Q 040519 2 SLIAGRLPGSTNYKIKNYWNTHIK 25 (101)
Q Consensus 2 s~IA~~LpGRTdN~VKN~wn~~l~ 25 (101)
..||..+ |.+.+.|+.+.....+
T Consensus 30 ~eIa~~l-~~s~~~v~~~l~ra~~ 52 (54)
T PF08281_consen 30 AEIAEIL-GISESTVKRRLRRARK 52 (54)
T ss_dssp HHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred HHHHHHH-CcCHHHHHHHHHHHHh
Confidence 4566666 7888888887665443
No 19
>PHA02291 hypothetical protein
Probab=26.63 E-value=28 Score=25.07 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=11.6
Q ss_pred hhCcCCCCChhH-HHHHH
Q 040519 4 IAGRLPGSTNYK-IKNYW 20 (101)
Q Consensus 4 IA~~LpGRTdN~-VKN~w 20 (101)
+..+||||||-. |-.++
T Consensus 76 LP~~LPGRT~~~sID~~~ 93 (132)
T PHA02291 76 LPTYLPGRTGDNSIDMRY 93 (132)
T ss_pred ccccCCCCCCCcccceee
Confidence 456899999765 54443
No 20
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=26.59 E-value=57 Score=30.12 Aligned_cols=28 Identities=7% Similarity=0.415 Sum_probs=23.5
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKL 28 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~ 28 (101)
|.+|-..+|||+|-..+.||...|..++
T Consensus 383 w~k~R~~vPnRSdsQcR~RY~nvL~~s~ 410 (939)
T KOG0049|consen 383 WAKVRQAVPNRSDSQCRERYTNVLNRSA 410 (939)
T ss_pred hhhHHHhcCCccHHHHHHHHHHHHHHhh
Confidence 8899999999999999998876665543
No 21
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=23.50 E-value=86 Score=26.23 Aligned_cols=21 Identities=24% Similarity=0.575 Sum_probs=18.0
Q ss_pred hhhhCcCCCCChhHHHHHHHH
Q 040519 2 SLIAGRLPGSTNYKIKNYWNT 22 (101)
Q Consensus 2 s~IA~~LpGRTdN~VKN~wn~ 22 (101)
..|++.|+||+.-+|+++-..
T Consensus 48 ael~~~l~~Rs~aEI~~fl~~ 68 (344)
T PF11035_consen 48 AELAKELPGRSEAEIRDFLQQ 68 (344)
T ss_pred HHHHhhccCcCHHHHHHHHHH
Confidence 368899999999999998664
Done!