Query 040519
Match_columns 101
No_of_seqs 125 out of 804
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 14:45:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 98.7 4.5E-09 1.5E-13 66.4 2.0 36 1-37 31-66 (72)
2 1ign_A Protein (RAP1); RAP1,ye 98.3 9.8E-08 3.3E-12 73.9 -0.1 29 1-29 36-64 (246)
3 3zqc_A MYB3; transcription-DNA 98.3 1.8E-07 6.3E-12 64.5 1.3 31 1-31 76-106 (131)
4 2din_A Cell division cycle 5-l 98.3 3.3E-07 1.1E-11 56.7 2.0 32 1-33 31-62 (66)
5 2ltp_A Nuclear receptor corepr 97.6 1.4E-07 4.7E-12 62.1 0.0 29 1-29 38-66 (89)
6 3osg_A MYB21; transcription-DN 98.1 1.2E-06 4.1E-11 60.1 2.7 27 1-27 84-110 (126)
7 1guu_A C-MYB, MYB proto-oncoge 98.1 1.3E-06 4.6E-11 51.4 1.9 25 1-25 26-50 (52)
8 2cjj_A Radialis; plant develop 98.1 1.6E-06 5.6E-11 58.0 2.5 35 1-35 34-69 (93)
9 2cqr_A RSGI RUH-043, DNAJ homo 98.0 1.4E-06 4.9E-11 55.9 1.7 24 1-24 44-67 (73)
10 1gvd_A MYB proto-oncogene prot 98.0 2E-06 6.9E-11 50.7 1.3 24 1-24 26-49 (52)
11 2yum_A ZZZ3 protein, zinc fing 98.0 1.4E-06 4.7E-11 55.0 0.6 28 1-28 36-63 (75)
12 2d9a_A B-MYB, MYB-related prot 97.9 1.8E-06 6.2E-11 52.3 0.3 25 1-25 31-55 (60)
13 2llk_A Cyclin-D-binding MYB-li 97.9 2.3E-06 7.9E-11 55.0 0.4 21 1-22 45-65 (73)
14 1ity_A TRF1; helix-turn-helix, 97.9 2.7E-06 9.3E-11 53.0 0.5 30 1-30 33-64 (69)
15 1w0t_A Telomeric repeat bindin 97.8 4.7E-06 1.6E-10 49.4 0.6 26 1-26 25-52 (53)
16 1x41_A Transcriptional adaptor 97.7 6E-06 2.1E-10 50.3 0.3 25 1-25 31-55 (60)
17 2ckx_A NGTRF1, telomere bindin 97.5 3.7E-05 1.3E-09 50.3 2.3 28 1-28 23-54 (83)
18 2dim_A Cell division cycle 5-l 97.5 1.7E-05 5.8E-10 49.3 0.4 26 1-26 32-57 (70)
19 2elk_A SPCC24B10.08C protein; 97.2 6.2E-05 2.1E-09 45.6 0.4 23 1-23 32-55 (58)
20 3sjm_A Telomeric repeat-bindin 97.1 0.00016 5.4E-09 44.8 1.7 25 1-25 34-60 (64)
21 2juh_A Telomere binding protei 97.1 0.00036 1.2E-08 48.7 3.2 28 1-28 40-71 (121)
22 1x58_A Hypothetical protein 49 97.0 0.00023 7.7E-09 44.8 1.5 26 1-26 30-58 (62)
23 1h89_C C-MYB, MYB proto-oncoge 96.9 0.0002 6.9E-09 50.3 0.9 24 1-24 81-104 (159)
24 2aje_A Telomere repeat-binding 96.9 0.00043 1.5E-08 47.1 2.4 27 1-27 36-66 (105)
25 2cqq_A RSGI RUH-037, DNAJ homo 96.8 0.00014 4.8E-09 46.3 -0.6 25 1-26 34-58 (72)
26 1h8a_C AMV V-MYB, MYB transfor 96.7 0.0003 1E-08 47.9 0.5 24 1-24 50-73 (128)
27 1gv2_A C-MYB, MYB proto-oncoge 96.7 0.00047 1.6E-08 45.2 1.3 24 1-24 27-50 (105)
28 2eqr_A N-COR1, N-COR, nuclear 96.4 0.00066 2.2E-08 41.4 0.5 24 1-24 34-57 (61)
29 2yus_A SWI/SNF-related matrix- 96.3 0.0007 2.4E-08 43.6 0.2 22 1-22 40-61 (79)
30 3osg_A MYB21; transcription-DN 96.1 0.0017 5.8E-08 44.2 1.4 24 1-24 33-56 (126)
31 3zqc_A MYB3; transcription-DNA 96.1 0.0029 1E-07 43.2 2.4 24 1-24 25-48 (131)
32 2roh_A RTBP1, telomere binding 96.0 0.0032 1.1E-07 43.9 2.5 28 1-28 54-85 (122)
33 2k9n_A MYB24; R2R3 domain, DNA 96.0 0.0017 5.7E-08 43.0 0.9 24 1-24 24-47 (107)
34 3hm5_A DNA methyltransferase 1 95.6 0.0071 2.4E-07 40.4 2.8 32 1-32 52-88 (93)
35 2iw5_B Protein corest, REST co 95.2 0.0023 7.9E-08 49.2 -0.9 26 1-26 155-180 (235)
36 1wgx_A KIAA1903 protein; MYB D 94.9 0.016 5.4E-07 37.1 2.5 23 1-23 34-56 (73)
37 1ign_A Protein (RAP1); RAP1,ye 94.7 0.011 3.7E-07 45.7 1.6 27 1-27 174-200 (246)
38 1h89_C C-MYB, MYB proto-oncoge 93.6 0.011 3.8E-07 41.3 -0.3 24 1-24 29-52 (159)
39 4eef_G F-HB80.4, designed hema 93.5 0.02 6.9E-07 37.0 0.8 22 1-22 46-67 (74)
40 2lr8_A CAsp8-associated protei 92.0 0.019 6.5E-07 36.8 0.0 24 1-25 39-62 (70)
41 1ug2_A 2610100B20RIK gene prod 91.6 0.054 1.8E-06 36.5 1.0 25 1-25 58-82 (95)
42 1h8a_C AMV V-MYB, MYB transfor 87.6 0.1 3.6E-06 35.0 0.0 22 4-25 1-22 (128)
43 4iej_A DNA methyltransferase 1 79.6 1.4 4.8E-05 29.3 2.9 31 1-31 52-87 (93)
44 1fex_A TRF2-interacting telome 65.6 1.7 5.9E-05 26.0 0.6 24 1-24 33-57 (59)
45 2yqk_A Arginine-glutamic acid 56.1 4.6 0.00016 24.2 1.3 22 1-22 31-53 (63)
46 2crg_A Metastasis associated p 50.6 6.9 0.00024 23.9 1.5 22 1-22 30-52 (70)
47 2ebi_A DNA binding protein GT- 26.0 19 0.00064 22.2 0.6 29 1-30 36-68 (86)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.70 E-value=4.5e-09 Score=66.42 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=31.3
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHHHHHhCCCCCCC
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQT 37 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~~~~~~~~~ 37 (101)
|..||++|||||++.|||||+.++++++.. |.++..
T Consensus 31 W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~ 66 (72)
T 2cu7_A 31 WTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKET 66 (72)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCc
Confidence 899999999999999999999999888665 666543
No 2
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.27 E-value=9.8e-08 Score=73.90 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=27.1
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLL 29 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~ 29 (101)
|..||++|||||+|.|||||+.+|++++.
T Consensus 36 W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 36 YDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp HHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 89999999999999999999999998754
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.27 E-value=1.8e-07 Score=64.48 Aligned_cols=31 Identities=42% Similarity=0.862 Sum_probs=28.3
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHHHHHhC
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNH 31 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~~~ 31 (101)
|+.||++|||||++.|||||+.++++++...
T Consensus 76 W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~ 106 (131)
T 3zqc_A 76 WSVIAKLIPGRTDNAIKNRWNSSISKRISTN 106 (131)
T ss_dssp HHHHTTTSTTCCHHHHHHHHHHTTGGGCCCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 8999999999999999999999998886544
No 4
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=3.3e-07 Score=56.66 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=28.6
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHHHHHhCCC
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGL 33 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~~~~~ 33 (101)
|+.||. |||||++.+|+||+.++++.+.....
T Consensus 31 W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 31 WRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp HHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 899999 99999999999999999988776543
No 5
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.55 E-value=1.4e-07 Score=62.10 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=26.4
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLL 29 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~ 29 (101)
|+.||.+|||||++.|||||+.++++.-.
T Consensus 38 W~~IA~~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 38 WSAIARMVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 99999999999999999999998887543
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.11 E-value=1.2e-06 Score=60.10 Aligned_cols=27 Identities=41% Similarity=0.749 Sum_probs=24.9
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQK 27 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk 27 (101)
|+.||++|||||+++|||||+.++++.
T Consensus 84 W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 84 WAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999977664
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.07 E-value=1.3e-06 Score=51.37 Aligned_cols=25 Identities=28% Similarity=0.725 Sum_probs=23.3
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIK 25 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~ 25 (101)
|+.||.+|||||+..+++||+.+|.
T Consensus 26 W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 26 WKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 8999999999999999999998763
No 8
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.07 E-value=1.6e-06 Score=57.97 Aligned_cols=35 Identities=20% Similarity=0.451 Sum_probs=28.3
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHHH-HHhCCCCC
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQK-LLNHGLDP 35 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk-~~~~~~~~ 35 (101)
|.+||.+|||||+++|++||+.+++.. ....|..|
T Consensus 34 W~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp 69 (93)
T 2cjj_A 34 WANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP 69 (93)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 899999999999999999999877654 33455544
No 9
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.04 E-value=1.4e-06 Score=55.90 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=22.5
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHI 24 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l 24 (101)
|.+||.+|||||+++|++||+.++
T Consensus 44 W~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 44 WDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp HHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999754
No 10
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.96 E-value=2e-06 Score=50.70 Aligned_cols=24 Identities=33% Similarity=0.812 Sum_probs=22.5
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHI 24 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l 24 (101)
|+.||.+|||||+..+++||+.+|
T Consensus 26 W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 26 WSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHc
Confidence 899999999999999999999765
No 11
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=1.4e-06 Score=54.95 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=25.4
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQKL 28 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~ 28 (101)
|.+||.+|||||+..+++||+.++++.+
T Consensus 36 W~~IA~~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 36 WQKIADELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988887654
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.90 E-value=1.8e-06 Score=52.25 Aligned_cols=25 Identities=20% Similarity=0.612 Sum_probs=23.1
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIK 25 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~ 25 (101)
|+.||.+|||||+..+++||+.+|+
T Consensus 31 W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 31 WKFLASHFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred HHHHHHHccCCCHHHHHHHHHHHcC
Confidence 8999999999999999999998654
No 13
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.86 E-value=2.3e-06 Score=54.97 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=20.3
Q ss_pred ChhhhCcCCCCChhHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNT 22 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~ 22 (101)
|+.||++| |||+++|||||+.
T Consensus 45 W~~IA~~l-gRt~~q~knRw~~ 65 (73)
T 2llk_A 45 WATIGAAL-GRSASSVKDRCRL 65 (73)
T ss_dssp HHHHHHHH-TSCHHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHH
Confidence 89999999 9999999999996
No 14
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.85 E-value=2.7e-06 Score=52.95 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=26.6
Q ss_pred ChhhhCcCC--CCChhHHHHHHHHHHHHHHHh
Q 040519 1 WSLIAGRLP--GSTNYKIKNYWNTHIKQKLLN 30 (101)
Q Consensus 1 Ws~IA~~Lp--GRTdN~VKN~wn~~l~kk~~~ 30 (101)
|+.||.+|| |||+..+++||+.+++..+.+
T Consensus 33 W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 33 WSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp HHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 899999999 999999999999988776443
No 15
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.77 E-value=4.7e-06 Score=49.43 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=24.1
Q ss_pred ChhhhCcCC--CCChhHHHHHHHHHHHH
Q 040519 1 WSLIAGRLP--GSTNYKIKNYWNTHIKQ 26 (101)
Q Consensus 1 Ws~IA~~Lp--GRTdN~VKN~wn~~l~k 26 (101)
|+.||.+|| |||+..+++||..++|.
T Consensus 25 W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 25 WSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp HHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 899999999 99999999999988764
No 16
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.70 E-value=6e-06 Score=50.26 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=23.0
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIK 25 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~ 25 (101)
|..||++|||||+..+++||+.++.
T Consensus 31 W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 31 WQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 8999999999999999999997653
No 17
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=97.54 E-value=3.7e-05 Score=50.32 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=25.1
Q ss_pred ChhhhCc----CCCCChhHHHHHHHHHHHHHH
Q 040519 1 WSLIAGR----LPGSTNYKIKNYWNTHIKQKL 28 (101)
Q Consensus 1 Ws~IA~~----LpGRTdN~VKN~wn~~l~kk~ 28 (101)
|+.|++. |+|||++.+|++|..++++..
T Consensus 23 W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 23 WRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp HHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 8899985 999999999999999887664
No 18
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=1.7e-05 Score=49.32 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.6
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQ 26 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~k 26 (101)
|..||.+|||||+..+++||+.+|+.
T Consensus 32 W~~Ia~~l~~Rt~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 32 WSRIASLLHRKSAKQCKARWYEWLDP 57 (70)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHTSCS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHcCC
Confidence 89999999999999999999986653
No 19
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.21 E-value=6.2e-05 Score=45.55 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=21.5
Q ss_pred ChhhhCcCC-CCChhHHHHHHHHH
Q 040519 1 WSLIAGRLP-GSTNYKIKNYWNTH 23 (101)
Q Consensus 1 Ws~IA~~Lp-GRTdN~VKN~wn~~ 23 (101)
|..||++|| |||+..+++||..+
T Consensus 32 W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 32 WADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHH
Confidence 899999999 99999999999864
No 20
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.14 E-value=0.00016 Score=44.85 Aligned_cols=25 Identities=32% Similarity=0.664 Sum_probs=22.2
Q ss_pred ChhhhCcCC--CCChhHHHHHHHHHHH
Q 040519 1 WSLIAGRLP--GSTNYKIKNYWNTHIK 25 (101)
Q Consensus 1 Ws~IA~~Lp--GRTdN~VKN~wn~~l~ 25 (101)
|+.||+++| |||+..+++||..+++
T Consensus 34 W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 34 WAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp HHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 899999866 9999999999988654
No 21
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.07 E-value=0.00036 Score=48.66 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=25.0
Q ss_pred ChhhhCc----CCCCChhHHHHHHHHHHHHHH
Q 040519 1 WSLIAGR----LPGSTNYKIKNYWNTHIKQKL 28 (101)
Q Consensus 1 Ws~IA~~----LpGRTdN~VKN~wn~~l~kk~ 28 (101)
|+.|+.. |+|||++++|++|..+++...
T Consensus 40 W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 40 WRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp HHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 8999997 599999999999999888754
No 22
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=96.99 E-value=0.00023 Score=44.79 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=23.2
Q ss_pred Chhhh---CcCCCCChhHHHHHHHHHHHH
Q 040519 1 WSLIA---GRLPGSTNYKIKNYWNTHIKQ 26 (101)
Q Consensus 1 Ws~IA---~~LpGRTdN~VKN~wn~~l~k 26 (101)
|+.|+ .+|+|||+-+||++|..++|+
T Consensus 30 W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 30 WNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp HHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 89999 789999999999999986654
No 23
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.92 E-value=0.0002 Score=50.28 Aligned_cols=24 Identities=33% Similarity=0.812 Sum_probs=22.4
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHI 24 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l 24 (101)
|+.||.+|||||++.+++||..++
T Consensus 81 W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 81 WSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHh
Confidence 899999999999999999998765
No 24
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.90 E-value=0.00043 Score=47.14 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=23.8
Q ss_pred ChhhhCcC----CCCChhHHHHHHHHHHHHH
Q 040519 1 WSLIAGRL----PGSTNYKIKNYWNTHIKQK 27 (101)
Q Consensus 1 Ws~IA~~L----pGRTdN~VKN~wn~~l~kk 27 (101)
|+.|+..+ +|||++++|++|..++++.
T Consensus 36 W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 36 WRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp HHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 89999965 9999999999999977754
No 25
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.82 E-value=0.00014 Score=46.34 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.4
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQ 26 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~k 26 (101)
|.+||.+| |||..+|++||+.+.+.
T Consensus 34 W~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 34 WEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp HHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 89999997 99999999999986554
No 26
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.73 E-value=0.0003 Score=47.88 Aligned_cols=24 Identities=33% Similarity=0.732 Sum_probs=22.3
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHI 24 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l 24 (101)
|..||.+|||||+..+++||..++
T Consensus 50 W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 50 WSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhc
Confidence 899999999999999999998754
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.70 E-value=0.00047 Score=45.20 Aligned_cols=24 Identities=33% Similarity=0.812 Sum_probs=22.2
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHI 24 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l 24 (101)
|..||.+|||||+..++.||..++
T Consensus 27 W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 27 WSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred HHHHhhhhcCCCHHHHHHHHHhcc
Confidence 889999999999999999998754
No 28
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.40 E-value=0.00066 Score=41.37 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.7
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHI 24 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l 24 (101)
|..||.+|||||..+|.++|....
T Consensus 34 w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 34 FGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhc
Confidence 789999999999999999998743
No 29
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=96.30 E-value=0.0007 Score=43.57 Aligned_cols=22 Identities=9% Similarity=0.169 Sum_probs=20.9
Q ss_pred ChhhhCcCCCCChhHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNT 22 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~ 22 (101)
|..||++++|||+..+++||..
T Consensus 40 W~~IA~~v~~RT~~qcr~r~~~ 61 (79)
T 2yus_A 40 WNKVSEHVGSRTQDECILHFLR 61 (79)
T ss_dssp HHHHHHHHSSCCHHHHHHHHTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHH
Confidence 8999999999999999999975
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.13 E-value=0.0017 Score=44.17 Aligned_cols=24 Identities=21% Similarity=0.717 Sum_probs=22.5
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHI 24 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l 24 (101)
|..||.+|||||+..++.||..++
T Consensus 33 W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 33 WKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHhhhc
Confidence 899999999999999999999765
No 31
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.08 E-value=0.0029 Score=43.18 Aligned_cols=24 Identities=25% Similarity=0.655 Sum_probs=22.4
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHI 24 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l 24 (101)
|..||.+|||||+..++.||..++
T Consensus 25 W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 25 WPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp GGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHHHHHhhcc
Confidence 899999999999999999998765
No 32
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=96.04 E-value=0.0032 Score=43.85 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=24.5
Q ss_pred ChhhhCc----CCCCChhHHHHHHHHHHHHHH
Q 040519 1 WSLIAGR----LPGSTNYKIKNYWNTHIKQKL 28 (101)
Q Consensus 1 Ws~IA~~----LpGRTdN~VKN~wn~~l~kk~ 28 (101)
|+.|+.. |+|||+..+|++|..+++...
T Consensus 54 W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 54 WRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp HHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 8899986 499999999999999887763
No 33
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.00 E-value=0.0017 Score=42.98 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=22.2
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHI 24 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l 24 (101)
|..||.+|||||+..++.||..+|
T Consensus 24 W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 24 WIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred HHHHhhhcCCCCHHHHHHHHHHHH
Confidence 889999999999999999998754
No 34
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=95.65 E-value=0.0071 Score=40.42 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=27.9
Q ss_pred ChhhhCcC-----CCCChhHHHHHHHHHHHHHHHhCC
Q 040519 1 WSLIAGRL-----PGSTNYKIKNYWNTHIKQKLLNHG 32 (101)
Q Consensus 1 Ws~IA~~L-----pGRTdN~VKN~wn~~l~kk~~~~~ 32 (101)
|..|+.++ ++||..+||+||...+++.+..++
T Consensus 52 W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 52 FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred eeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 78999999 599999999999998888777664
No 35
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=95.19 E-value=0.0023 Score=49.18 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=23.7
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQ 26 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~k 26 (101)
|..||+.++|||++.||++|+.+.++
T Consensus 155 W~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 155 FQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999976655
No 36
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.90 E-value=0.016 Score=37.14 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=21.3
Q ss_pred ChhhhCcCCCCChhHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTH 23 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~ 23 (101)
|..||.++||||..+|+.||..+
T Consensus 34 We~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 34 WSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHH
Confidence 88999999999999999998864
No 37
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=94.66 E-value=0.011 Score=45.73 Aligned_cols=27 Identities=7% Similarity=0.110 Sum_probs=24.6
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIKQK 27 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk 27 (101)
|.+||+.+|+||++.+|+||...+++.
T Consensus 174 fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 174 FKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 789999999999999999999877664
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=93.59 E-value=0.011 Score=41.25 Aligned_cols=24 Identities=29% Similarity=0.744 Sum_probs=8.3
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHI 24 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l 24 (101)
|..||.+|||||+..++.||..++
T Consensus 29 W~~Ia~~l~~Rt~~qcr~Rw~~~l 52 (159)
T 1h89_C 29 WKVIANYLPNRTDVQCQHRWQKVL 52 (159)
T ss_dssp --------------CHHHHHHTTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHcc
Confidence 899999999999999999998654
No 39
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=93.48 E-value=0.02 Score=37.00 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.6
Q ss_pred ChhhhCcCCCCChhHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNT 22 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~ 22 (101)
|.+||..+||||..+|+.++..
T Consensus 46 WekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 46 WKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp STTTGGGSCSSCHHHHHGGGC-
T ss_pred HHHHHHHcCCCCHHHHHHHHHH
Confidence 8999999999999999998753
No 40
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=92.04 E-value=0.019 Score=36.82 Aligned_cols=24 Identities=13% Similarity=0.382 Sum_probs=21.1
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIK 25 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~ 25 (101)
|..||..| ||+.+.|+||+..+|+
T Consensus 39 fa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 39 FAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 78899999 9999999999987553
No 41
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=91.61 E-value=0.054 Score=36.49 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=22.1
Q ss_pred ChhhhCcCCCCChhHHHHHHHHHHH
Q 040519 1 WSLIAGRLPGSTNYKIKNYWNTHIK 25 (101)
Q Consensus 1 Ws~IA~~LpGRTdN~VKN~wn~~l~ 25 (101)
|+.||+.|-+|+.|.|+||+..+|+
T Consensus 58 Fa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 58 FSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHH
Confidence 5779999999999999999998654
No 42
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=87.64 E-value=0.1 Score=35.01 Aligned_cols=22 Identities=9% Similarity=0.379 Sum_probs=0.4
Q ss_pred hhCcCCCCChhHHHHHHHHHHH
Q 040519 4 IAGRLPGSTNYKIKNYWNTHIK 25 (101)
Q Consensus 4 IA~~LpGRTdN~VKN~wn~~l~ 25 (101)
||..|||||+...+.||..++.
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~ 22 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLN 22 (128)
T ss_dssp ---------------------C
T ss_pred CccccCCCCHHHHHHHHHHhhC
Confidence 8999999999999999987543
No 43
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=79.58 E-value=1.4 Score=29.25 Aligned_cols=31 Identities=10% Similarity=0.055 Sum_probs=25.2
Q ss_pred ChhhhCcCC-----CCChhHHHHHHHHHHHHHHHhC
Q 040519 1 WSLIAGRLP-----GSTNYKIKNYWNTHIKQKLLNH 31 (101)
Q Consensus 1 Ws~IA~~Lp-----GRTdN~VKN~wn~~l~kk~~~~ 31 (101)
|..|+.++. +||..++|.||....++.+..+
T Consensus 52 w~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 52 FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 677888774 7999999999999777766655
No 44
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=65.61 E-value=1.7 Score=26.01 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=20.6
Q ss_pred ChhhhC-cCCCCChhHHHHHHHHHH
Q 040519 1 WSLIAG-RLPGSTNYKIKNYWNTHI 24 (101)
Q Consensus 1 Ws~IA~-~LpGRTdN~VKN~wn~~l 24 (101)
|..++. .+|++|-...++||..+|
T Consensus 33 wk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 33 WKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp HHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred HHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 667888 799999999999998765
No 45
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.06 E-value=4.6 Score=24.16 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=18.9
Q ss_pred ChhhhC-cCCCCChhHHHHHHHH
Q 040519 1 WSLIAG-RLPGSTNYKIKNYWNT 22 (101)
Q Consensus 1 Ws~IA~-~LpGRTdN~VKN~wn~ 22 (101)
|..|++ +||+||.-+|..++..
T Consensus 31 f~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 31 FFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhc
Confidence 678998 6999999999988764
No 46
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=50.58 E-value=6.9 Score=23.93 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.1
Q ss_pred ChhhhC-cCCCCChhHHHHHHHH
Q 040519 1 WSLIAG-RLPGSTNYKIKNYWNT 22 (101)
Q Consensus 1 Ws~IA~-~LpGRTdN~VKN~wn~ 22 (101)
|..|++ +||+||.-+|..++..
T Consensus 30 f~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 30 FNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp HHHHHHTTCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHh
Confidence 578999 6999999999998874
No 47
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=26.04 E-value=19 Score=22.18 Aligned_cols=29 Identities=10% Similarity=0.398 Sum_probs=21.4
Q ss_pred ChhhhCcC----CCCChhHHHHHHHHHHHHHHHh
Q 040519 1 WSLIAGRL----PGSTNYKIKNYWNTHIKQKLLN 30 (101)
Q Consensus 1 Ws~IA~~L----pGRTdN~VKN~wn~~l~kk~~~ 30 (101)
|..||..| -.||+...++.|.. |++.+..
T Consensus 36 W~~Ia~~m~~~G~~rs~~qC~~K~~n-L~k~Yk~ 68 (86)
T 2ebi_A 36 WEQISSKMREKGFDRSPDMCTDKWRN-LLKEFKK 68 (86)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHCS
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHH
Confidence 66677765 27999999999998 4444543
Done!