BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040521
(383 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 151 bits (381), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 138/240 (57%), Gaps = 12/240 (5%)
Query: 89 HSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHL 148
H + ++++ + NS + L ID+VQRLG+ Y F EIE+ L+ Y ++
Sbjct: 52 HQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE--- 108
Query: 149 HDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAG 208
+DL ++RFRLLR+ GY V D+FN F ++G F +V+ D+ L+E+Y+AS L + G
Sbjct: 109 NDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKS-SVTSDVRGLLELYQASYLRVHG 167
Query: 209 EEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVF--FGNFQGE 266
E+ LDEA F+ L+ + LDH + + + L+ + LPR A+ + + +
Sbjct: 168 EDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESH 227
Query: 267 RRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLA 326
+ +L E AK DFNM+ LH KE+ ++ +WWKDL +KLP+ARD+ + G F W++
Sbjct: 228 NKALL----EFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYF--WIS 281
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 6/218 (2%)
Query: 104 GGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQ 163
G + L +ID ++RLGI Y F+ EI+EIL + Y +S C +DL AL+FRLLRQ
Sbjct: 61 GRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNC----NDLCTSALQFRLLRQ 116
Query: 164 EGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKML 223
G+ + ++F+ F + G+F + +++ D+ L+ +YEAS + ++ L++A FS L
Sbjct: 117 HGFNISPEIFSKFQDENGKFKE-SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHL 175
Query: 224 NECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFN 283
HL + + L HK +PR + F + + + +VL AK DFN
Sbjct: 176 ESAAPHLKSPLREQVTHALEQCLHKGVPRVETR-FFISSIYDKEQSKNNVLLRFAKLDFN 234
Query: 284 MVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTF 321
++ LH +E+ QV++WWKDL LP+ARD+ + F
Sbjct: 235 LLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYF 272
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 131 bits (329), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 6/218 (2%)
Query: 104 GGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQ 163
G + L +ID ++RLGI Y F+ EI+EIL + Y +S C +DL AL+FRLLRQ
Sbjct: 61 GRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNC----NDLCTSALQFRLLRQ 116
Query: 164 EGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKML 223
G+ + ++F+ F + G+F + +++ D+ L+ +YEAS + ++ L++A FS L
Sbjct: 117 HGFNISPEIFSKFQDENGKFKE-SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHL 175
Query: 224 NECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFN 283
HL + + L HK +PR + F + + + +VL AK DFN
Sbjct: 176 ESAAPHLKSPLREQVTHALEQCLHKGVPRVETR-FFISSIYDKEQSKNNVLLRFAKLDFN 234
Query: 284 MVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTF 321
++ LH +E+ QV++WWKDL LP+ARD+ + F
Sbjct: 235 LLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYF 272
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 9/223 (4%)
Query: 109 EGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYV 168
+ L +ID ++RLGI Y F+ EI++IL + Y +S C +DL AL+FRLLRQ G+ +
Sbjct: 68 DTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNI 123
Query: 169 PADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMT 228
++F+ F + G+F + +++ D+ L+ +YEAS + ++ L++A FS L
Sbjct: 124 SPEIFSKFQDENGKFKE-SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP 182
Query: 229 HLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHAL 288
HL + + L HK +PR + F + + + +VL AK DFN++ L
Sbjct: 183 HLKSPLREQVTHALEQCLHKGVPRVETR-FFISSIYDKEQSKNNVLLRFAKLDFNLLQML 241
Query: 289 HHKEIVQVTKWWKDLGLAKKLPFARDQPLNG---TFGLWLASQ 328
H +E+ QV++WWKDL LP+ARD+ + T G++ Q
Sbjct: 242 HKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQ 284
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 136/248 (54%), Gaps = 12/248 (4%)
Query: 81 FEHDIQV--EHSRKLKDLK----HIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEIL 134
F D QV +++++++ LK ++ G + L +ID ++RLGI Y F+ EI++IL
Sbjct: 32 FSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDIL 91
Query: 135 QRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGR 194
+ Y +S C +DL AL+FRLLRQ G+ + ++F+ F + G+F + +++ D+
Sbjct: 92 DQIYNQNSNC----NDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKE-SLASDVLG 146
Query: 195 LMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFM 254
L+ +YEAS + ++ L++A FS L HL + + L HK +PR
Sbjct: 147 LLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVE 206
Query: 255 AKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARD 314
+ F + + + +VL AK DFN++ LH +E+ QV++WWKDL LP+ARD
Sbjct: 207 TR-FFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARD 265
Query: 315 QPLNGTFG 322
+ + F
Sbjct: 266 RVVECYFS 273
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 120/213 (56%), Gaps = 6/213 (2%)
Query: 109 EGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYV 168
+ L +ID ++RLGI Y F+ EI++IL + Y +S C +DL AL+FRLLRQ G+ +
Sbjct: 53 DTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNI 108
Query: 169 PADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMT 228
++F+ F + G+F + +++ D+ L+ +YEAS + ++ L++A FS L
Sbjct: 109 SPEIFSKFQDENGKFKE-SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP 167
Query: 229 HLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHAL 288
HL + + L HK +PR + F + + + +VL AK DFN++ L
Sbjct: 168 HLKSPLREQVTHALEQCLHKGVPRVETR-FFISSIYDKEQSKNNVLLRFAKLDFNLLQML 226
Query: 289 HHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTF 321
H +E+ QV++WWKDL LP+ARD+ + F
Sbjct: 227 HKQELAQVSRWWKDLDFVTTLPYARDRVVECYF 259
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 120/214 (56%), Gaps = 6/214 (2%)
Query: 109 EGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYV 168
+ L +ID ++RLGI Y F+ EI++IL + Y +S C +DL AL+FRLLRQ G+ +
Sbjct: 66 DTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNI 121
Query: 169 PADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMT 228
++F+ F + G+F + +++ D+ L+ +YEAS + ++ L++A FS L
Sbjct: 122 SPEIFSKFQDENGKFKE-SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP 180
Query: 229 HLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHAL 288
HL + + L HK +PR + F + + + +VL AK DFN++ L
Sbjct: 181 HLKSPLREQVTHALEQCLHKGVPRVETR-FFISSIYDKEQSKNNVLLRFAKLDFNLLQML 239
Query: 289 HHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFG 322
H +E+ QV++WWKDL LP+ARD+ + F
Sbjct: 240 HKQELAQVSRWWKDLDFVTTLPYARDRVVECYFS 273
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 120/213 (56%), Gaps = 6/213 (2%)
Query: 109 EGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYV 168
+ L +ID ++RLGI Y F+ EI++IL + Y +S C +DL AL+FRLLRQ G+ +
Sbjct: 68 DTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNI 123
Query: 169 PADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMT 228
++F+ F + G+F + +++ D+ L+ +YEAS + ++ L++A FS L
Sbjct: 124 SPEIFSKFQDENGKFKE-SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP 182
Query: 229 HLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHAL 288
HL + + L HK +PR + F + + + +VL AK DFN++ L
Sbjct: 183 HLKSPLREQVTHALEQCLHKGVPRVETR-FFISSIYDKEQSKNNVLLRFAKLDFNLLQML 241
Query: 289 HHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTF 321
H +E+ QV++WWKDL LP+ARD+ + F
Sbjct: 242 HKQELAQVSRWWKDLDFVTTLPYARDRVVECYF 274
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 136/247 (55%), Gaps = 12/247 (4%)
Query: 81 FEHDIQV--EHSRKLKDLK----HIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEIL 134
F D QV +++++++ LK ++ G + L +ID ++RLGI Y F+ EI++IL
Sbjct: 32 FSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDIL 91
Query: 135 QRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGR 194
+ Y +S C +DL AL+FRLLRQ G+ + ++F+ F + G+F + +++ D+
Sbjct: 92 DQIYNQNSNC----NDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKE-SLASDVLG 146
Query: 195 LMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFM 254
L+ +YEAS + ++ L++A FS L HL + + L HK +PR
Sbjct: 147 LLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVE 206
Query: 255 AKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARD 314
+ F + + + +VL AK DFN++ LH +E+ QV++WWKDL LP+ARD
Sbjct: 207 TR-FFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARD 265
Query: 315 QPLNGTF 321
+ + F
Sbjct: 266 RVVECYF 272
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 136/247 (55%), Gaps = 12/247 (4%)
Query: 81 FEHDIQV--EHSRKLKDLK----HIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEIL 134
F D QV +++++++ LK ++ G + L +ID ++RLGI Y F+ EI++IL
Sbjct: 32 FSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDIL 91
Query: 135 QRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGR 194
+ Y +S C +DL AL+FRLLRQ G+ + ++F+ F + G+F + +++ D+
Sbjct: 92 DQIYNQNSNC----NDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKE-SLASDVLG 146
Query: 195 LMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFM 254
L+ +YEAS + ++ L++A FS L HL + + L HK +PR
Sbjct: 147 LLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVE 206
Query: 255 AKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARD 314
+ F + + + +VL AK DFN++ LH +E+ QV++WWKDL LP+ARD
Sbjct: 207 TR-FFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARD 265
Query: 315 QPLNGTF 321
+ + F
Sbjct: 266 RVVECYF 272
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 7/228 (3%)
Query: 111 LVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPA 170
L +ID VQRLG+ Y F+ +I L R G L AL FRLLRQ G+ V
Sbjct: 68 LELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQ 127
Query: 171 DMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTH- 229
+ F+ F + G F + N+ ED ++ +YEAS L++ GE LDEA F+ L E
Sbjct: 128 EAFSGFKDQNGNFLE-NLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEK 186
Query: 230 LDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHALH 289
+ A + + L P H+ R A V+ ++ VL E+A D+NM+ +++
Sbjct: 187 IGKELAEQVNHALELPLHRRTQRLEA--VWSIEAYRKKEDANQVLLELAILDYNMIQSVY 244
Query: 290 HKEIVQVTKWWKDLGLAKKLPFARDQPLNGTF---GLWLASQIQACQS 334
+++ + ++WW+ +GLA KL FARD+ + + G+ Q C++
Sbjct: 245 QRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRN 292
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 100/338 (29%), Positives = 156/338 (46%), Gaps = 53/338 (15%)
Query: 28 SKDPDKISKTSRPNLIEFTPSPTIYQKGCI-------------TSDNTVASSPLKH---F 71
+K ++++K SR I PSP +Y I + D + SSP F
Sbjct: 209 TKRQERLAKLSREE-IYAVPSPLLYSLEGIQDIVEWERIMEVQSQDGSFLSSPASTACVF 267
Query: 72 THTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIE 131
HT ++ +S +K + L + E L+++D + RLGI F+ EI+
Sbjct: 268 MHTGDAKC-----LEFLNSVMIKFGNFVPCLYPVDLLERLLIVDNIVRLGIYRHFEKEIK 322
Query: 132 EILQRQYIISSTCG---GHLH---DLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRF-- 183
E L Y + G G L+ DL+ AL FRLLR Y V +F+NF G+F
Sbjct: 323 EALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDANGKFIC 382
Query: 184 --SQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLD--------HN 233
QFN +D+ ++ +Y ASQL+ GE LDEA F+ K L E + + N
Sbjct: 383 STGQFN--KDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQN 440
Query: 234 QALAIGNTLRHPYHKSLPRFMAK---DVFFGNFQGERRWMLHV-------LKEIAKKDFN 283
+ I L+ +H S+PR AK V+ ++ + + + E+ K DFN
Sbjct: 441 LSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFN 500
Query: 284 MVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTF 321
++ ++H +E+ VT W++D GL FAR++PL F
Sbjct: 501 IIQSIHQEEMKNVTSWFRDSGLP-LFTFARERPLEFYF 537
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 111/211 (52%), Gaps = 5/211 (2%)
Query: 106 NSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEG 165
+S L +ID ++RLGI F+ EI EIL +Y ++ DL ALRFRLLRQ
Sbjct: 82 DSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDER--DLYSTALRFRLLRQYD 139
Query: 166 YYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNE 225
+ V ++F+ F +G + ++ +D L+++YEAS LS GEE L A F+ K L +
Sbjct: 140 FSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQK 199
Query: 226 -CMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNM 284
+ D N +I L P H + A+ F + R M + E+AK DFNM
Sbjct: 200 RVLVDKDINLLSSIERALELPTHWRVQMPNARS--FIDAYKRRPDMNPTVLELAKLDFNM 257
Query: 285 VHALHHKEIVQVTKWWKDLGLAKKLPFARDQ 315
V A +E+ + ++WW GL +LPF RD+
Sbjct: 258 VQAQFQQELKEASRWWNSTGLVHELPFVRDR 288
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 118/217 (54%), Gaps = 9/217 (4%)
Query: 111 LVMIDAVQRLGIEYLFKDEIEEILQRQYI----ISSTCGGHLHDLQEVALRFRLLRQEGY 166
L +ID +QR+G+ F++E +EIL Y+ + DL +L FRLLR+ G+
Sbjct: 54 LELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGF 113
Query: 167 YVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNEC 226
V ++F++F +EG F + ++S+D L+++YEAS L GE L+ A +F+ K L E
Sbjct: 114 QVAQEVFDSFKNEEGEFKE-SLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEK 172
Query: 227 MTH--LDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNM 284
+ +D + I +L P H + R A + + +R M V+ E+A D N+
Sbjct: 173 VNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAP--VWIEWYRKRPDMNPVVLELAILDLNI 230
Query: 285 VHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTF 321
V A +E+ + +WW++ G +KLPFARD+ + F
Sbjct: 231 VQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYF 267
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 119/219 (54%), Gaps = 11/219 (5%)
Query: 111 LVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLH----DLQEVALRFRLLRQEGY 166
L +I ++ LG+ F+DEI+EIL Y C + DL AL FRLLRQ G+
Sbjct: 58 LELIHDLKYLGLSDFFQDEIKEILGVIYN-EHKCFHNNEVEKMDLYFTALGFRLLRQHGF 116
Query: 167 YVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKM---- 222
+ D+FN F ++G + ++++D ++++YEAS L GE+ L+ A +F+ K
Sbjct: 117 NISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKK 176
Query: 223 LNECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDF 282
L+E +D N L I ++L P H + A+ +F + R M ++ E+AK +F
Sbjct: 177 LDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEAR--WFIDAYARRPDMNPLIFELAKLNF 234
Query: 283 NMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTF 321
N++ A H +E+ +++WW L +KLPF RD+ + F
Sbjct: 235 NIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFF 273
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 112/220 (50%), Gaps = 21/220 (9%)
Query: 108 FEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCG------GHLHDLQEVALRFRLL 161
E L ++D ++ LGI FK EI+ L Y S G + DL AL R L
Sbjct: 247 LERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTL 306
Query: 162 RQEGYYVPADMFNNFMIKEGRF--SQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFS 219
R GY V +D+ NNF + GRF S ++ ++ ++ AS L+ E +D+A +F+
Sbjct: 307 RMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFA 366
Query: 220 AKMLNECM-THLDHNQAL--AIGNTLRHPYHKSLPRFMAK---DVFFGNFQGERRWMLHV 273
L E + T + N L I + +P+H S+PR A+ D + N+ +R+ + +
Sbjct: 367 EPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRM 426
Query: 274 -------LKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLA 306
E+AK DFN+V +LH +E+ +T+WWK+ G+A
Sbjct: 427 PSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMA 466
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 29/235 (12%)
Query: 108 FEGLVMIDAVQRLGIEYLFKDEIEEILQRQYI------ISSTCGGHLHDLQEVALRFRLL 161
FE L +D V+RLGI+ FK+EI+E L Y I + D+ + A+ R+L
Sbjct: 271 FERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRIL 330
Query: 162 RQEGYYVPADMFNNFMIKEGRFSQF--NVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFS 219
R GY V +D+ F + G F F + ++ V S +S GE ++EA +
Sbjct: 331 RLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCT 390
Query: 220 AKMLNECMTHLDHNQALAIGNTLR--------HPYHKSLPRFMAKDVFFGNFQGERRWML 271
+ L + ++D A +R +P+HKS+PR A+ + N+ + W+
Sbjct: 391 ERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARS-YIENYGPDDVWLG 449
Query: 272 HVLK-----------EIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQ 315
+ E+AK DFN V ++H E+ + +WWK G L F R++
Sbjct: 450 KTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFT-DLNFTRER 503
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 110/228 (48%), Gaps = 30/228 (13%)
Query: 108 FEGLVMIDAVQRLGIEYLFKDEIEEILQ---RQYIISSTCGG---HLHDLQEVALRFRLL 161
FE + ++D +QRLGI F++EI+E L R + + C H+ D+ + A+ FRLL
Sbjct: 246 FEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLL 305
Query: 162 RQEGYYVPADMFNNFMIKEGRFSQF--NVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFS 219
RQ GY V AD+F NF KEG F F ++ + + +Y ASQL+ EE L A +FS
Sbjct: 306 RQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFS 364
Query: 220 AKMLNECMTHLD--------HNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERR-WM 270
L E + + IG L P++ SLPR + + + GE W+
Sbjct: 365 YNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETR-FYIDQYGGENDVWI 423
Query: 271 LHVLK-----------EIAKKDFNMVHALHHKEIVQVTKWWKDLGLAK 307
L E+AK+D+N A H E KW+++ L++
Sbjct: 424 GKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLSE 471
>pdb|2EJQ|A Chain A, Conserved Hypothetical Protein (Ttha0227) From Thermo
Thermophilus Hb8
pdb|2EJQ|B Chain B, Conserved Hypothetical Protein (Ttha0227) From Thermo
Thermophilus Hb8
Length = 130
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 178 IKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLD 231
+ G S F ED+GR + +Y S L +AG EG D + ML+E HL+
Sbjct: 50 LDPGPPSAFGGFEDLGRHIALYYGSFLEVAG-EGFDWEAEVWETMLHELRHHLE 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,685,941
Number of Sequences: 62578
Number of extensions: 483199
Number of successful extensions: 1166
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1095
Number of HSP's gapped (non-prelim): 21
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)