Query 040521
Match_columns 383
No_of_seqs 154 out of 727
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 09:15:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 5.6E-98 1E-102 778.0 21.5 304 55-370 1-310 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 8.1E-84 1.8E-88 693.8 16.5 268 90-370 245-543 (784)
3 PLN02592 ent-copalyl diphospha 100.0 8.4E-83 1.8E-87 685.1 18.7 271 89-370 284-591 (800)
4 PF01397 Terpene_synth: Terpen 100.0 6.2E-58 1.3E-62 420.4 12.0 177 65-242 1-183 (183)
5 PF03936 Terpene_synth_C: Terp 99.4 3.5E-15 7.7E-20 139.7 -4.6 88 274-368 1-88 (270)
6 cd00868 Terpene_cyclase_C1 Ter 98.8 6.3E-10 1.4E-14 105.0 0.5 74 288-368 1-74 (284)
7 cd00687 Terpene_cyclase_nonpla 87.8 0.13 2.8E-06 49.8 -0.6 69 295-370 18-87 (303)
8 KOG3951 Uncharacterized conser 25.8 98 0.0021 31.1 4.3 58 177-243 263-320 (321)
9 COG2976 Uncharacterized protei 20.8 67 0.0015 31.0 2.1 17 289-305 7-23 (207)
10 PF11848 DUF3368: Domain of un 19.8 39 0.00085 24.7 0.2 19 159-177 26-44 (48)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=5.6e-98 Score=778.03 Aligned_cols=304 Identities=33% Similarity=0.512 Sum_probs=285.1
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCcchhhHHHHHHHHHHHHHHHHHhh--cCCccchhhHHHHHHHhCcccccHHHHHH
Q 040521 55 GCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLV--GGNSFEGLVMIDAVQRLGIEYLFKDEIEE 132 (383)
Q Consensus 55 r~~any~PsiW~d~fl~s~~~~~~~~~~~~~~~~~~~Lk~eVk~ml~~~--~~d~~~~L~lID~LQRLGIsyhFe~EI~~ 132 (383)
|++++|+|++|||+++.++.+++.. .+.+.+++++||++|++||... ..|++++|+|||+||||||+|||++||++
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~~--~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~ 78 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYSE--EDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKE 78 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcch--hHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence 7889999999999777777766543 1257788999999999999864 46999999999999999999999999999
Q ss_pred HHHHHHhhhcCCC-CCCCChhhHhHhhhhhhhcCceeccccccccccCCcccccccccccHHHHHHHHHhhccCccCchH
Q 040521 133 ILQRQYIISSTCG-GHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEG 211 (383)
Q Consensus 133 ~L~~iy~~~~~~~-~~~~DL~~tAL~FRLLRqhGY~VSsDvF~~Fkd~~G~F~~~~l~~DvkgLLsLYeAS~L~~~gE~I 211 (383)
+|++||+.|.... ....|||+|||+|||||||||+||||||++|+|++|+|++ ++.+||+|||||||||||+++||+|
T Consensus 79 ~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~-~~~~d~~g~l~Ly~As~l~~~gE~i 157 (542)
T cd00684 79 ILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKE-SLTQDVKGMLSLYEASHLSFPGEDI 157 (542)
T ss_pred HHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCc-hhhhhhHHHHHHHHHhhcCCCCcHH
Confidence 9999999875321 3357999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc---cCchHHHHHHHhccCCCCCCcchhhchhhhHhhccCCcccCHHHHHHHHhhhhhhhhhh
Q 040521 212 LDEAGQFSAKMLNECMTH---LDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHAL 288 (383)
Q Consensus 212 LdeA~~Fs~~~Lk~~~~~---~~~~L~~~V~~aL~~P~h~~l~RleaR~~yI~~Y~~~~~~~~~~LLeLAKLDFN~~Qsl 288 (383)
||||+.||++||++.+.+ ++++|+++|++||++|+|+++||+|||+ ||++|++++++| ++||||||+|||+||++
T Consensus 158 LdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~-yi~~Y~~~~~~n-~~lLelAkldfn~~Q~~ 235 (542)
T cd00684 158 LDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARW-YIEFYEQEDDHN-ETLLELAKLDFNILQAL 235 (542)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHH-HHHHhCCCcccc-HHHHHHHHHHHHHHhHh
Confidence 999999999999999987 7889999999999999999999999999 999999999999 99999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeeccccccccccHHH
Q 040521 289 HHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSSQKL 368 (383)
Q Consensus 289 hQ~EL~~isrWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~d~~~s~e~ 368 (383)
||+||++++|||+++||.++|||||||++||| ||++|++|||++|.+|+ .|||.++++|++ ||+||..||.||
T Consensus 236 hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~y--f~~~a~~feP~~s~~Rl--~~aK~~~l~~~i---DD~fD~~gt~eE 308 (542)
T cd00684 236 HQEELKILSRWWKDLDLASKLPFARDRLVECY--FWAAGTYFEPQYSLARI--ALAKTIALITVI---DDTYDVYGTLEE 308 (542)
T ss_pred HHHHHHHHhHHHHhcCCcccCCcccchhHHHH--HHHHhcccCccchHHHH--HHHHHHHHHhhh---HhhhccCCCHHH
Confidence 99999999999999999989999999999999 99999999999999999 899999999999 999999999998
Q ss_pred Hh
Q 040521 369 LL 370 (383)
Q Consensus 369 ~~ 370 (383)
|.
T Consensus 309 l~ 310 (542)
T cd00684 309 LE 310 (542)
T ss_pred HH
Confidence 74
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=8.1e-84 Score=693.79 Aligned_cols=268 Identities=25% Similarity=0.433 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHhhcC--------CccchhhHHHHHHHhCcccccHHHHHHHHHHHHhhhcC-CCCCCCChhhHhHhhhh
Q 040521 90 SRKLKDLKHIFSLVGG--------NSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISST-CGGHLHDLQEVALRFRL 160 (383)
Q Consensus 90 ~~Lk~eVk~ml~~~~~--------d~~~~L~lID~LQRLGIsyhFe~EI~~~L~~iy~~~~~-~~~~~~DL~~tAL~FRL 160 (383)
++-++|+++++++.++ ++++++++||+||||||+|||++||+++|+.+|+.|.. ......|+++|||+|||
T Consensus 245 ~~~~~yL~~~~~~~~g~vP~~yp~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRL 324 (784)
T PLN02279 245 AGCLRYLRSLLQKFGNAVPTVYPLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRI 324 (784)
T ss_pred hHHHHHHHHHHHhcCCCCCCCCcccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHH
Confidence 4457899999988542 88999999999999999999999999999999997652 12335799999999999
Q ss_pred hhhcCceeccccccccccCCcccccccc---cccHHHHHHHHHhhccCccCchHHHHHHHHHHHHHHHHHhc-------c
Q 040521 161 LRQEGYYVPADMFNNFMIKEGRFSQFNV---SEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTH-------L 230 (383)
Q Consensus 161 LRqhGY~VSsDvF~~Fkd~~G~F~~~~l---~~DvkgLLsLYeAS~L~~~gE~ILdeA~~Fs~~~Lk~~~~~-------~ 230 (383)
||||||+||||||++|+|++ |++ ++ .+||+|||||||||||++|||+|||||+.||++||++.+.+ +
T Consensus 325 LR~hGy~VS~dvf~~F~~~~--F~~-~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~ 401 (784)
T PLN02279 325 LRLNGYDVSSDPLKQFAEDH--FSD-SLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRL 401 (784)
T ss_pred HHHcCCCCChhHHhhcCCCc--ccc-hhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 99999999999999999765 998 66 68999999999999999999999999999999999998874 4
Q ss_pred CchHHHHHHHhccCCCCCCcchhhchhhhHhhccCCcc------------cCHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 040521 231 DHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERR------------WMLHVLKEIAKKDFNMVHALHHKEIVQVTK 298 (383)
Q Consensus 231 ~~~L~~~V~~aL~~P~h~~l~RleaR~~yI~~Y~~~~~------------~~~~~LLeLAKLDFN~~QslhQ~EL~~isr 298 (383)
+++|+++|+|||++|||+++||||||+ ||++|++++. +| +.||||||+|||+||++||+||++|+|
T Consensus 402 ~~~L~~eV~~AL~~P~~~~l~RlEaR~-yI~~Y~~~~~~i~Kt~yr~~~~~n-~~lLeLAklDFN~~Qs~hq~EL~~l~r 479 (784)
T PLN02279 402 RKYIKKEVEDALNFPYYANLERLANRR-SIENYAVDDTRILKTSYRCSNICN-QDFLKLAVEDFNFCQSIHREELKQLER 479 (784)
T ss_pred CccHHHHHHHHhcCchhcCccHHHHHH-HHHHhccccchhcccccccccccc-HHHHHHHHHHHHHHHHHHHHHHHHhCe
Confidence 678999999999999999999999999 9999998886 57 899999999999999999999999999
Q ss_pred HHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeeccccccccccHHHHh
Q 040521 299 WWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSSQKLLL 370 (383)
Q Consensus 299 WWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~d~~~s~e~~~ 370 (383)
||||+|| .+|||||||+|||| ||++|++||||||.+|+ .|||+++|+|+| ||+||++||.|||.
T Consensus 480 Wwke~~L-~~L~faRdr~ve~Y--f~aaa~~fEPe~S~aRi--~~aK~~~L~tvi---DD~fD~yGt~eEL~ 543 (784)
T PLN02279 480 WIVENRL-DKLKFARQKLAYCY--FSAAATLFSPELSDARL--SWAKNGVLTTVV---DDFFDVGGSEEELE 543 (784)
T ss_pred eHHhcCC-ccCCchhhHHHHHH--HHHHHhhcCchhhHHHH--HHHHHHHHHHHH---HHHhhccCCHHHHH
Confidence 9999999 59999999999999 99999999999999999 999999999999 99999999999985
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=8.4e-83 Score=685.05 Aligned_cols=271 Identities=28% Similarity=0.419 Sum_probs=249.7
Q ss_pred HHHHHHHHHHHHHhhc--------CCccchhhHHHHHHHhCcccccHHHHHHHHHHHHhhhcCCC------CCCCChhhH
Q 040521 89 HSRKLKDLKHIFSLVG--------GNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCG------GHLHDLQEV 154 (383)
Q Consensus 89 ~~~Lk~eVk~ml~~~~--------~d~~~~L~lID~LQRLGIsyhFe~EI~~~L~~iy~~~~~~~------~~~~DL~~t 154 (383)
-++-++|+++++++.+ .+++++|++||+||||||+|||++||+++|+++|+.|.... ....|+++|
T Consensus 284 d~~cl~YL~~~~~k~~GgVP~vyP~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~T 363 (800)
T PLN02592 284 DENCLEYLNKAVQRFNGGVPNVYPVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDT 363 (800)
T ss_pred chHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHH
Confidence 3456799999998863 28899999999999999999999999999999999664221 124799999
Q ss_pred hHhhhhhhhcCceeccccccccccCCcccccc--cccccHHHHHHHHHhhccCccCchHHHHHHHHHHHHHHHHHh----
Q 040521 155 ALRFRLLRQEGYYVPADMFNNFMIKEGRFSQF--NVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMT---- 228 (383)
Q Consensus 155 AL~FRLLRqhGY~VSsDvF~~Fkd~~G~F~~~--~l~~DvkgLLsLYeAS~L~~~gE~ILdeA~~Fs~~~Lk~~~~---- 228 (383)
||+|||||||||+||||||++|++ +|+|+++ +..+|++|||+|||||||+++||+|||||+.||+++|++.+.
T Consensus 364 ALaFRLLRqhGy~VS~DvF~~F~~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l 442 (800)
T PLN02592 364 AMGFRLLRLHGHQVSADVFKHFEK-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANEL 442 (800)
T ss_pred HHHHHHHHHcCCCCChHHHHhhcC-CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999987 8999973 247899999999999999999999999999999999999863
Q ss_pred --c--cCchHHHHHHHhccCCCCCCcchhhchhhhHhhccCCccc-------------CHHHHHHHHhhhhhhhhhhhhH
Q 040521 229 --H--LDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRW-------------MLHVLKEIAKKDFNMVHALHHK 291 (383)
Q Consensus 229 --~--~~~~L~~~V~~aL~~P~h~~l~RleaR~~yI~~Y~~~~~~-------------~~~~LLeLAKLDFN~~QslhQ~ 291 (383)
+ .+++|+++|+|||++|||++|||+|||+ ||++|++++++ | +.||||||+|||+||++||+
T Consensus 443 ~d~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~-yI~~Y~~~~~~~i~Kt~yr~~~~~n-~~lLeLAklDFn~~Qs~hq~ 520 (800)
T PLN02592 443 LDKWIIMKDLPGEVGFALEIPWYASLPRVETRF-YIEQYGGEDDVWIGKTLYRMPYVNN-NEYLELAKLDYNNCQALHQL 520 (800)
T ss_pred ccccccCccHHHHHHHhccChhhcCcchHHHHH-HHHHhcCCcccchhhhhccccccCC-HHHHHHHHHHHHHHHHHhHH
Confidence 1 3578999999999999999999999999 99999988775 7 89999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeeccccccccccHHHHh
Q 040521 292 EIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSSQKLLL 370 (383)
Q Consensus 292 EL~~isrWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~d~~~s~e~~~ 370 (383)
||++|+|||||+||. +|||||||+|||| ||++|++||||||.+|+ .|||+++|+|+| ||+||+.||.|||.
T Consensus 521 EL~~lsrWwke~~L~-~L~faRdr~ve~Y--fwa~~~~feP~~s~~Ri--~~aK~~~Litvi---DD~fD~yGt~eEl~ 591 (800)
T PLN02592 521 EWDNFQKWYEECNLG-EFGVSRSELLLAY--FLAAASIFEPERSHERL--AWAKTTVLVEAI---SSYFNKETSSKQRR 591 (800)
T ss_pred HHHHHhHHHHhcCCC-cCCcchhHHHHHH--HHHHHhhcCccchHHHH--HHHHHHHHHHhh---cccccCCCCHHHHH
Confidence 999999999999996 8999999999999 99999999999999999 999999999999 99999999999986
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=6.2e-58 Score=420.38 Aligned_cols=177 Identities=33% Similarity=0.510 Sum_probs=150.6
Q ss_pred CCCCcccccCCCCCC---cchhhHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhCcccccHHHHHHHHHHHHhhh
Q 040521 65 SSPLKHFTHTTRHPS---FFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIIS 141 (383)
Q Consensus 65 W~d~fl~s~~~~~~~---~~~~~~~~~~~~Lk~eVk~ml~~~~~d~~~~L~lID~LQRLGIsyhFe~EI~~~L~~iy~~~ 141 (383)
|||+|+++++|.+.. ...+.+.+++++||++||.||....+|++++|+|||+||||||+|||++||+++|+++|+.+
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~ 80 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSW 80 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTT
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhc
Confidence 999999876655532 01245678899999999999987655899999999999999999999999999999999987
Q ss_pred cCCCCCCCChhhHhHhhhhhhhcCceeccccccccccCCcccccccccccHHHHHHHHHhhccCccCchHHHHHHHHHHH
Q 040521 142 STCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAK 221 (383)
Q Consensus 142 ~~~~~~~~DL~~tAL~FRLLRqhGY~VSsDvF~~Fkd~~G~F~~~~l~~DvkgLLsLYeAS~L~~~gE~ILdeA~~Fs~~ 221 (383)
........|||+|||+|||||||||+||||||++|+|++|+|+. ++++||+|||||||||||+++||+|||||+.||++
T Consensus 81 ~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~-~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~ 159 (183)
T PF01397_consen 81 DEDNEEIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKE-SLSNDVKGLLSLYEASHLRFHGEDILDEARAFTTK 159 (183)
T ss_dssp TTTSHTSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSG-GGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHHH
T ss_pred cccccccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccch-hhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHHH
Confidence 53322235999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHhccCc---hHHHHHHHhc
Q 040521 222 MLNECMTHLDH---NQALAIGNTL 242 (383)
Q Consensus 222 ~Lk~~~~~~~~---~L~~~V~~aL 242 (383)
+|++++++..+ +|+++|+|||
T Consensus 160 ~L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 160 HLKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHHTTTCTTSCHHHHHHHHHH
T ss_pred HHHHHhccCCCCcHHHHHHHHHhC
Confidence 99999986544 4999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=99.43 E-value=3.5e-15 Score=139.70 Aligned_cols=88 Identities=20% Similarity=0.201 Sum_probs=81.9
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEe
Q 040521 274 LKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYL 353 (383)
Q Consensus 274 LLeLAKLDFN~~QslhQ~EL~~isrWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv 353 (383)
+|+|||+|||.||++||+|++++.+||+++|+..+.+.+|+|++.++ ||.++.++.|..+..|+ ++++...+.+++
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~--~~~~aa~~~P~~~~~l~--~~a~~~~w~f~~ 76 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAY--FGLLAARFYPDSSDELL--AAADWMAWLFIF 76 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHH--HHHHHHHHSGCGHHHHH--HHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhH--HhhhhheeCCCcHHHHH--HHHhhchheeee
Confidence 68999999999999999999999999999999778888999999999 99999999999666676 899999888888
Q ss_pred eeccccccccccHHH
Q 040521 354 MFMGRLMNLFSSQKL 368 (383)
Q Consensus 354 ~~~dd~~d~~~s~e~ 368 (383)
||++|-+|+.++
T Consensus 77 ---DD~~D~~~~~~~ 88 (270)
T PF03936_consen 77 ---DDFFDDGGSAEE 88 (270)
T ss_dssp ---HHHHHTTSHHHH
T ss_pred ---eeccccccchHH
Confidence 999999999887
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=98.84 E-value=6.3e-10 Score=105.04 Aligned_cols=74 Identities=30% Similarity=0.570 Sum_probs=69.6
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeeccccccccccHH
Q 040521 288 LHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSSQK 367 (383)
Q Consensus 288 lhQ~EL~~isrWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~d~~~s~e 367 (383)
.||+|++++++||+++||....+++|.+..++| +|+++++|+|+.+..|+ .+++..++++++ ||.||..|+.+
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~--~~~a~~~p~~~~~~~l~--~~a~~~~~~f~~---DD~~D~~~~~~ 73 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECY--FWAAGSYFEPQYSEARI--ALAKTIALLTVI---DDTYDDYGTLE 73 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHH--HHHHHhhcCccchHHHH--HHHHHHHHHHHH---HhccccCCCHH
Confidence 599999999999999999877779999999999 99999999999999999 999999999988 99999999876
Q ss_pred H
Q 040521 368 L 368 (383)
Q Consensus 368 ~ 368 (383)
+
T Consensus 74 ~ 74 (284)
T cd00868 74 E 74 (284)
T ss_pred H
Confidence 5
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=87.80 E-value=0.13 Score=49.77 Aligned_cols=69 Identities=9% Similarity=-0.099 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeeccccccccc-cHHHHh
Q 040521 295 QVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFS-SQKLLL 370 (383)
Q Consensus 295 ~isrWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~d~~~-s~e~~~ 370 (383)
+...|.++.|+. .-+.+|++.++++ |+.++.++.|+.+..|+. ..++-..+.+++ ||++|-.+ +.+++.
T Consensus 18 ~~~~w~~~~~l~-~~~~~~~~~~~~~--~~~~~a~~~P~a~~~~l~-l~~~~~~w~f~~---DD~~D~~~~~~~~~~ 87 (303)
T cd00687 18 EYLEWVLEEMLI-PSEKAEKRFLSAD--FGDLAALFYPDADDERLM-LAADLMAWLFVF---DDLLDRDQKSPEDGE 87 (303)
T ss_pred HHHHHHHHcCCC-CcchhHHHHhcCC--HHHHHhhcCCCCCHHHHH-HHHHHHHHHHHh---cccCCccccCHHHHH
Confidence 477898888763 3458999999999 898999999999999994 224555555555 99999873 666543
No 8
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.81 E-value=98 Score=31.12 Aligned_cols=58 Identities=24% Similarity=0.294 Sum_probs=40.6
Q ss_pred ccCCcccccccccccHHHHHHHHHhhccCccCchHHHHHHHHHHHHHHHHHhccCchHHHHHHHhcc
Q 040521 177 MIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLR 243 (383)
Q Consensus 177 kd~~G~F~~~~l~~DvkgLLsLYeAS~L~~~gE~ILdeA~~Fs~~~Lk~~~~~~~~~L~~~V~~aL~ 243 (383)
-+.+|.|.. ...-|+||-..|-.+-- .... +-|=.|.-||++||.. .+-.+++++-|+
T Consensus 263 Vhp~GAFv~-~s~iDmkgcvrllk~q~-p~~~-e~LLnaLRfTTKHlNd------esTpK~ir~ll~ 320 (321)
T KOG3951|consen 263 VHPNGAFVS-NSSIDMKGCVRLLKLQP-PEQS-ECLLNALRFTTKHLND------ESTPKSIRHLLE 320 (321)
T ss_pred ccccccccc-cCcCcHHHHHHHHHcCC-chhh-HHHHHHHHHHHhhcCC------CCChHHHHHHhc
Confidence 467899987 77789999998887653 3333 3466799999999963 334555665543
No 9
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.79 E-value=67 Score=30.96 Aligned_cols=17 Identities=24% Similarity=0.882 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHhCC
Q 040521 289 HHKEIVQVTKWWKDLGL 305 (383)
Q Consensus 289 hQ~EL~~isrWWkdl~l 305 (383)
-|+|+..|.+|||+.|-
T Consensus 7 E~qql~~ik~wwkeNGk 23 (207)
T COG2976 7 EQQQLEAIKDWWKENGK 23 (207)
T ss_pred HHHHHHHHHHHHHHCCc
Confidence 37899999999999983
No 10
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=19.84 E-value=39 Score=24.69 Aligned_cols=19 Identities=16% Similarity=0.515 Sum_probs=13.7
Q ss_pred hhhhhcCceeccccccccc
Q 040521 159 RLLRQEGYYVPADMFNNFM 177 (383)
Q Consensus 159 RLLRqhGY~VSsDvF~~Fk 177 (383)
.-|+++||++|+++++.+.
T Consensus 26 ~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 26 DRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHHcCcccCHHHHHHHH
Confidence 3347778899988877654
Done!