Query 040521
Match_columns 383
No_of_seqs 154 out of 727
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 14:48:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m00_A Aristolochene synthase; 100.0 4E-104 1E-108 824.2 17.5 308 39-370 8-316 (550)
2 3g4d_A (+)-delta-cadinene synt 100.0 3E-103 1E-107 817.8 18.7 303 51-370 18-320 (554)
3 3n0f_A Isoprene synthase; terp 100.0 5E-103 2E-107 817.2 16.0 304 53-370 13-318 (555)
4 2ong_A 4S-limonene synthase; m 100.0 1E-100 3E-105 798.0 19.5 302 55-370 2-309 (543)
5 2j5c_A 1,8-cineole synthase; t 100.0 1E-100 3E-105 801.9 12.9 324 30-370 9-336 (569)
6 1n1b_A (+)-bornyl diphosphate 100.0 5E-100 2E-104 793.9 16.2 305 52-370 3-315 (549)
7 3s9v_A Abietadiene synthase, c 100.0 1.9E-86 6.6E-91 714.7 19.0 271 90-370 245-551 (785)
8 3sdr_A Alpha-bisabolene syntha 100.0 2.2E-86 7.4E-91 716.8 16.7 271 90-370 273-579 (817)
9 3p5p_A Taxadiene synthase; cla 100.0 8.7E-86 3E-90 708.0 17.5 269 90-370 221-520 (764)
10 3pya_A ENT-copalyl diphosphate 100.0 1.1E-84 3.8E-89 695.3 16.3 268 90-370 220-524 (727)
11 1ps1_A Pentalenene synthase; a 99.0 7.2E-12 2.5E-16 120.7 -4.9 82 282-370 11-95 (337)
12 3bny_A Aristolochene synthase; 99.0 2.2E-11 7.5E-16 116.5 -3.2 80 282-369 21-101 (320)
13 1di1_A Aristolochene synthase; 98.9 3.6E-11 1.2E-15 113.6 -3.3 75 287-369 12-87 (300)
14 3kb9_A EPI-isozizaene synthase 97.8 5E-07 1.7E-11 89.6 -4.5 69 295-370 65-136 (382)
15 3sdr_A Alpha-bisabolene syntha 96.7 0.00032 1.1E-08 76.6 1.2 45 54-101 24-68 (817)
16 1c07_A Protein (epidermal grow 35.7 1.2E+02 0.0043 22.8 7.1 71 95-171 11-86 (95)
17 1qjt_A EH1, epidermal growth f 32.0 1.1E+02 0.0036 23.7 6.2 75 95-174 12-89 (99)
18 1fi6_A EH domain protein REPS1 30.6 81 0.0028 23.7 5.2 74 93-171 8-84 (92)
19 3s9v_A Abietadiene synthase, c 29.6 24 0.00083 38.4 2.6 41 59-101 5-45 (785)
20 1pd3_A Nonstructural protein N 24.2 41 0.0014 24.9 2.2 28 92-120 21-48 (58)
No 1
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=4e-104 Score=824.19 Aligned_cols=308 Identities=26% Similarity=0.420 Sum_probs=284.5
Q ss_pred CCccccccCCCCcccCCCCCCCCCCCCCCCcccccCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHH
Q 040521 39 RPNLIEFTPSPTIYQKGCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQ 118 (383)
Q Consensus 39 ~~~~~~~~~~~~~~~~r~~any~PsiW~d~fl~s~~~~~~~~~~~~~~~~~~~Lk~eVk~ml~~~~~d~~~~L~lID~LQ 118 (383)
++||.+-+ .||+||||||+|||+||+++.+++. .+.+.+++++||++||.||....+|++++|+|||+||
T Consensus 8 ~~~~~~~~-------~R~~~~~~ps~W~d~fl~~~~~~~~---~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lq 77 (550)
T 3m00_A 8 VANYEEEI-------VRPVADFSPSLWGDQFLSFSIKNQV---AEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIE 77 (550)
T ss_dssp ---------------CCCCCCCCCCTTTTTTSCCCCCHHH---HHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred cccccccc-------CCCCCCCCcccccccccccCCcchh---hHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 56775544 7999999999999999997654332 3456788999999999999753469999999999999
Q ss_pred HhCcccccHHHHHHHHHHHHhhhcCCCCCCCChhhHhHhhhhhhhcCceeccccccccccCCcccccccccccHHHHHHH
Q 040521 119 RLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEV 198 (383)
Q Consensus 119 RLGIsyhFe~EI~~~L~~iy~~~~~~~~~~~DL~~tAL~FRLLRqhGY~VSsDvF~~Fkd~~G~F~~~~l~~DvkgLLsL 198 (383)
||||+|||++||+++|++||+.|.. ..|||+|||+|||||||||+||||||++|+|++|+|++ ++.+|++|||+|
T Consensus 78 rLGi~~hF~~EI~~~L~~i~~~~~~----~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~-~l~~d~~glL~L 152 (550)
T 3m00_A 78 RLGISYHFEKEIDDILDQIYNQNSN----CNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKE-SLASDVLGLLNL 152 (550)
T ss_dssp HTTCGGGCHHHHHHHHHHHHHHCCC----CSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCG-GGGGCHHHHHHH
T ss_pred HcCchhhhHHHHHHHHHHHHHhccc----CCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccc-cchhchHHHHHH
Confidence 9999999999999999999988642 37999999999999999999999999999999999999 899999999999
Q ss_pred HHhhccCccCchHHHHHHHHHHHHHHHHHhccCchHHHHHHHhccCCCCCCcchhhchhhhHh-hccCCcccCHHHHHHH
Q 040521 199 YEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFG-NFQGERRWMLHVLKEI 277 (383)
Q Consensus 199 YeAS~L~~~gE~ILdeA~~Fs~~~Lk~~~~~~~~~L~~~V~~aL~~P~h~~l~RleaR~~yI~-~Y~~~~~~~~~~LLeL 277 (383)
||||||++|||+|||||+.||++||++.+++++++|+++|+|||++|+|+++||+|||+ ||+ +|++++++| +.||||
T Consensus 153 YeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~-yI~~~Y~~~~~~n-~~lLel 230 (550)
T 3m00_A 153 YEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRF-FISSIYDKEQSKN-NVLLRF 230 (550)
T ss_dssp HHHHTTCCTTCGGGTTHHHHHHHHHHHHGGGCCTTHHHHHHHHHHSCSTTSCHHHHHHH-HHHHTGGGCTTCC-HHHHHH
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHhCCCccCCchHHHHHH-HHHHHhccccccc-HHHHHH
Confidence 99999999999999999999999999998888889999999999999999999999999 999 999999999 999999
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeecc
Q 040521 278 AKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMG 357 (383)
Q Consensus 278 AKLDFN~~QslhQ~EL~~isrWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~d 357 (383)
||||||+||++||+||++|+||||++||+++|||||||+|||| ||++|++||||||.+|+ .|||.++|+||+ |
T Consensus 231 AkldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~y--fw~~~~~feP~~s~~R~--~~aK~~~l~tvi---D 303 (550)
T 3m00_A 231 AKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECY--FWTLGVYFEPQYSQARV--MLVKTISMISIV---D 303 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHH--HHHHHHCCSGGGHHHHH--HHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHH--HHHHHhhCCccchHHHH--HHHHHHHHHHHH---H
Confidence 9999999999999999999999999999889999999999999 99999999999999999 999999999999 9
Q ss_pred ccccccccHHHHh
Q 040521 358 RLMNLFSSQKLLL 370 (383)
Q Consensus 358 d~~d~~~s~e~~~ 370 (383)
|+||++||.|||.
T Consensus 304 D~yD~ygTleEl~ 316 (550)
T 3m00_A 304 DTFDAYGTVKELE 316 (550)
T ss_dssp HHHHTTCCHHHHH
T ss_pred HHccccCCHHHHH
Confidence 9999999999984
No 2
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=3.4e-103 Score=817.82 Aligned_cols=303 Identities=29% Similarity=0.495 Sum_probs=278.6
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhCcccccHHHH
Q 040521 51 IYQKGCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEI 130 (383)
Q Consensus 51 ~~~~r~~any~PsiW~d~fl~s~~~~~~~~~~~~~~~~~~~Lk~eVk~ml~~~~~d~~~~L~lID~LQRLGIsyhFe~EI 130 (383)
....||+||||||+|||+||++ .+++. .+.+.+++++||++||.||....+|++++|+|||+||||||+|||++||
T Consensus 18 ~~~~R~~~~~~ps~W~~~fl~~-~~~~~---~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI 93 (554)
T 3g4d_A 18 KDEMRPKADFQPSIWGDLFLNC-PDKNI---DAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEI 93 (554)
T ss_dssp -------CCCCCCTTTTTTTSC-CC------CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHH
T ss_pred CCCCCCCCCCCccccccccccC-CCchh---hHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHH
Confidence 3447999999999999999997 54443 2557788999999999999753469999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCChhhHhHhhhhhhhcCceeccccccccccCCcccccccccccHHHHHHHHHhhccCccCch
Q 040521 131 EEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEE 210 (383)
Q Consensus 131 ~~~L~~iy~~~~~~~~~~~DL~~tAL~FRLLRqhGY~VSsDvF~~Fkd~~G~F~~~~l~~DvkgLLsLYeAS~L~~~gE~ 210 (383)
+++|++||+. . . ....|||+|||+|||||||||+||||||++|+|++|+|++ ++.+|++|||+|||||||++|||+
T Consensus 94 ~~~L~~i~~~-~-~-~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~-~l~~d~~glL~LYeAs~l~~~gE~ 169 (554)
T 3g4d_A 94 EDELENIYHN-N-N-DAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKS-SVTSDVRGLLELYQASYLRVHGED 169 (554)
T ss_dssp HHHHHHHHHS-C-C-CTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCH-HHHHCHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHHHHHhc-c-C-CCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCccc-ccccchHHHHHHHHHHhCCCCCcH
Confidence 9999999975 2 1 1237999999999999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCchHHHHHHHhccCCCCCCcchhhchhhhHhhccCCcccCHHHHHHHHhhhhhhhhhhhh
Q 040521 211 GLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHALHH 290 (383)
Q Consensus 211 ILdeA~~Fs~~~Lk~~~~~~~~~L~~~V~~aL~~P~h~~l~RleaR~~yI~~Y~~~~~~~~~~LLeLAKLDFN~~QslhQ 290 (383)
|||||+.||++||++.+.+++++|+++|+|||++|+|+++||+|||+ ||++|++++++| +.||||||||||+||++||
T Consensus 170 iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~-yI~~Y~~~~~~n-~~lLelAkldFn~~Q~~hq 247 (554)
T 3g4d_A 170 ILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARH-YLSVYQDIESHN-KALLEFAKIDFNMLQFLHR 247 (554)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHH-HHHHHHSSTTCC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHH-HHHHhCcCcccc-HHHHHHHHHHHHHHHHHhH
Confidence 99999999999999998888889999999999999999999999999 999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeeccccccccccHHHHh
Q 040521 291 KEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSSQKLLL 370 (383)
Q Consensus 291 ~EL~~isrWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~d~~~s~e~~~ 370 (383)
+||++|+||||++||+++|||||||+|||| ||++|++||||||.+|+ .|||.++|+||+ ||+||++||.|||.
T Consensus 248 ~El~~l~rWwk~~~l~~~L~faRdr~ve~y--fw~~~~~feP~~s~~R~--~~aK~~~l~tvi---DD~yD~ygTleEl~ 320 (554)
T 3g4d_A 248 KELSEICRWWKDLDFQRKLPYARDRVVEGY--FWISGVYFEPQYSLGRK--MLTKVIAMASIV---DDTYDSYATYEELI 320 (554)
T ss_dssp HHHHHHHHHHHHHCHHHHCTTCCCCHHHHH--HHHHHHCCSGGGHHHHH--HHHHHHHHHHHH---HHHHTSSCCHHHHH
T ss_pred HHHHHHHHHHHHcCCcccCCchHHHHHHHH--HHHHHhhCCccccHHHH--HHHHHHHHHHHH---HHHhcccCCHHHHH
Confidence 999999999999999889999999999999 99999999999999999 999999999999 99999999999985
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=4.5e-103 Score=817.20 Aligned_cols=304 Identities=25% Similarity=0.379 Sum_probs=277.0
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcC-CccchhhHHHHHHHhCcccccHHHHH
Q 040521 53 QKGCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGG-NSFEGLVMIDAVQRLGIEYLFKDEIE 131 (383)
Q Consensus 53 ~~r~~any~PsiW~d~fl~s~~~~~~~~~~~~~~~~~~~Lk~eVk~ml~~~~~-d~~~~L~lID~LQRLGIsyhFe~EI~ 131 (383)
..|++||||||+|||+||+++.+++. .+.+.+++++||++||.||.. .. +++++|+|||+||||||+|||++||+
T Consensus 13 ~~~~~~~~~ps~W~~~fl~~~~~~~~---~~~~~~~~e~Lk~eVr~~l~~-~~~~~~~~L~lID~lqRLGi~~hF~~EI~ 88 (555)
T 3n0f_A 13 EARRSADYEPNSWDYDFLLSSDTDES---IEVYKDKAKKLEAEVRREINN-EKAEFLTLLELIDNVQRLGLGYRFESDIR 88 (555)
T ss_dssp ----CCCCCCCTTCHHHHTCC--------CHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHTTCGGGSHHHHH
T ss_pred ccCCCCCCCcccccccccccCCcchh---hHHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHcCchhhhHHHHH
Confidence 36899999999999999998765553 356788899999999999975 35 89999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCChhhHhHhhhhhhhcCceeccccccccccCCcccccccccccHHHHHHHHHhhccCccCchH
Q 040521 132 EILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEG 211 (383)
Q Consensus 132 ~~L~~iy~~~~~~~~~~~DL~~tAL~FRLLRqhGY~VSsDvF~~Fkd~~G~F~~~~l~~DvkgLLsLYeAS~L~~~gE~I 211 (383)
++|++||+..........|||+|||+|||||||||+||||||++|+|++|+|++ ++.+||+|||||||||||++|||+|
T Consensus 89 ~~L~~i~~~~~~~~~~~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~-~l~~dv~glL~LYeAs~l~~~gE~i 167 (555)
T 3n0f_A 89 RALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLE-NLKEDTKAILSLYEASFLALEGENI 167 (555)
T ss_dssp HHHHHHHHTCHHHHHTTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCG-GGGGCHHHHHHHHHHHTTCCTTCHH
T ss_pred HHHHHHHhhccccccccCCHHHHHHHHHHHHhcCCCcChHHHhcccccCccchh-hhhhhhHHHHHHHHHHhcccCCcHH
Confidence 999999973100000136999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-ccCchHHHHHHHhccCCCCCCcchhhchhhhHhhccCCcccCHHHHHHHHhhhhhhhhhhhh
Q 040521 212 LDEAGQFSAKMLNECMT-HLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHALHH 290 (383)
Q Consensus 212 LdeA~~Fs~~~Lk~~~~-~~~~~L~~~V~~aL~~P~h~~l~RleaR~~yI~~Y~~~~~~~~~~LLeLAKLDFN~~QslhQ 290 (383)
||||+.||+++|++.+. .++++|+++|+|||++|+|+++||||||+ ||++|++++++| ++||||||||||+||++||
T Consensus 168 LdeA~~Fs~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~-yI~~Y~~~~~~n-~~lLelAKlDFN~~Q~~hq 245 (555)
T 3n0f_A 168 LDEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVW-SIEAYRKKEDAN-QVLLELAILDYNMIQSVYQ 245 (555)
T ss_dssp HHHHHHHHHHHHHTCCHHHHCHHHHHHHHHHHHSCTTTSCHHHHHHH-HHHHHTTCTTCC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCchHHHHHHHHhcCCcccCchHHHHHH-HHHHhccccccc-HHHHHHHHHhHHHHHHHhH
Confidence 99999999999998765 56888999999999999999999999999 999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeeccccccccccHHHHh
Q 040521 291 KEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSSQKLLL 370 (383)
Q Consensus 291 ~EL~~isrWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~d~~~s~e~~~ 370 (383)
+||++|+||||++||+++|||||||+|||| ||++|++||||||.+|+ .|||.++|+||+ ||+||++||.|||.
T Consensus 246 ~EL~~lsrWwk~~~l~~~l~faRdr~ve~y--fw~~~~~feP~~s~~R~--~~aK~~~l~tvi---DD~yD~ygt~eEl~ 318 (555)
T 3n0f_A 246 RDLRETSRWWRRVGLATKLHFARDRLIESF--YWAVGVAFEPQYSDCRN--SVAKMFSFVTII---DDIYDVYGTLDELE 318 (555)
T ss_dssp HHHHHHHHHHHHHCHHHHCTTCCCCHHHHH--HHHHHHCCSGGGHHHHH--HHHHHHHHHHHH---HHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCcccCCchhhHHHHHH--HHHHHhhcCccchHHHH--HHHHHHHHHHHH---HHhccccCCHHHHH
Confidence 999999999999999889999999999999 99999999999999999 999999999999 99999999999985
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=1e-100 Score=797.95 Aligned_cols=302 Identities=26% Similarity=0.385 Sum_probs=283.7
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhCcccccHHHHHHHH
Q 040521 55 GCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEIL 134 (383)
Q Consensus 55 r~~any~PsiW~d~fl~s~~~~~~~~~~~~~~~~~~~Lk~eVk~ml~~~~~d~~~~L~lID~LQRLGIsyhFe~EI~~~L 134 (383)
||+||||||+|||+|+++.++.+. .+.+.+++++||++||+|+... .|++++|+|||+||||||+|||++||+++|
T Consensus 2 r~~~~~~ps~W~~~fl~~~~~~~~---~~~~~~~~~~Lk~~V~~~~~~~-~d~~~~l~liD~lqrLGi~~hF~~EI~~~L 77 (543)
T 2ong_A 2 RRSGNYNPSRWDVNFIQSLLSDYK---EDKHVIRASELVTLVKMELEKE-TDQIRQLELIDDLQRMGLSDHFQNEFKEIL 77 (543)
T ss_dssp CCCCCCCCCSSCHHHHHHCCCSSC---STHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTGGGTTHHHHHHHH
T ss_pred CCCCCCCCCcCCcccccCCCchhh---hhHHHHHHHHHHHHHHHHHhcc-cCHHHHHHHHHHHHhCCchhhhHHHHHHHH
Confidence 899999999999999997755543 2457788999999999999865 489999999999999999999999999999
Q ss_pred HHHHhhhcCCC---CC-CCChhhHhHhhhhhhhcCceeccccccccccCCcccccccccccHHHHHHHHHhhccCccCch
Q 040521 135 QRQYIISSTCG---GH-LHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEE 210 (383)
Q Consensus 135 ~~iy~~~~~~~---~~-~~DL~~tAL~FRLLRqhGY~VSsDvF~~Fkd~~G~F~~~~l~~DvkgLLsLYeAS~L~~~gE~ 210 (383)
++||+.+.... .. ..|||+|||+|||||||||+||||||++|||++|+|++ ++++||+|||||||||||++|||+
T Consensus 78 ~~i~~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~-~l~~d~~glL~Ly~As~l~~~gE~ 156 (543)
T 2ong_A 78 SSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKE-SLSDDTRGLLQLYEASFLLTEGET 156 (543)
T ss_dssp HHHHHTTTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCT-TGGGCHHHHHHHHHHHTTCCSSCH
T ss_pred HHHHHhhcccccccccccCCHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccc-hhhhccHHHHHHHHHHHcCCCChH
Confidence 99998764211 11 46999999999999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc-c-CchHHHHHHHhccCCCCCCcchhhchhhhHhhccCCcccCHHHHHHHHhhhhhhhhhh
Q 040521 211 GLDEAGQFSAKMLNECMTH-L-DHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHAL 288 (383)
Q Consensus 211 ILdeA~~Fs~~~Lk~~~~~-~-~~~L~~~V~~aL~~P~h~~l~RleaR~~yI~~Y~~~~~~~~~~LLeLAKLDFN~~Qsl 288 (383)
|||||+.||++||++.+.+ + +++|+++|+|||++|+|+++||+|||+ ||++|++++++| +.||||||||||+||++
T Consensus 157 iL~eA~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~-yI~~Y~~~~~~n-~~lLelAkldFn~~Q~~ 234 (543)
T 2ong_A 157 TLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPV-WIEWYRKRPDMN-PVVLELAILDLNIVQAQ 234 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHH-HHHHHHTCSSCC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHH-HHHHhccCcccc-HHHHHHHHHhHHHHHHH
Confidence 9999999999999999887 4 789999999999999999999999999 999999999999 99999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeeccccccccccHHH
Q 040521 289 HHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSSQKL 368 (383)
Q Consensus 289 hQ~EL~~isrWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~d~~~s~e~ 368 (383)
||+||++|+|||+++||.++|||||||+|||| ||++|++|||+||.+|+ .|+|.++++|++ ||+||.+||.||
T Consensus 235 hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Y--fw~~a~~feP~~s~~Rl--~~aK~~~litvi---DD~fD~~gt~eE 307 (543)
T 2ong_A 235 FQEELKESFRWWRNTGFVEKLPFARDRLVECY--FWNTGIIEPRQHASARI--MMGKVNALITVI---DDIYDVYGTLEE 307 (543)
T ss_dssp HHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHH--HTHHHHTCSTTCHHHHH--HHHHHHHHHHHH---HHHHHSSSCHHH
T ss_pred HHHHHHHHHHHHHHcCCcccccHHHHHHHHHH--HHHHHhccCCCccHHHH--HHHHHHHHHHHH---HHHhccCCCHHH
Confidence 99999999999999999988999999999999 99999999999999999 999999999998 999999999999
Q ss_pred Hh
Q 040521 369 LL 370 (383)
Q Consensus 369 ~~ 370 (383)
|.
T Consensus 308 l~ 309 (543)
T 2ong_A 308 LE 309 (543)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 5
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=1e-100 Score=801.90 Aligned_cols=324 Identities=26% Similarity=0.349 Sum_probs=256.5
Q ss_pred CCCCccccCCCcccccc-CCCCcccCCCCCCCCCCCCCCCcccccCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcCCcc
Q 040521 30 DPDKISKTSRPNLIEFT-PSPTIYQKGCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSF 108 (383)
Q Consensus 30 ~~~~~~~~~~~~~~~~~-~~~~~~~~r~~any~PsiW~d~fl~s~~~~~~~~~~~~~~~~~~~Lk~eVk~ml~~~~~d~~ 108 (383)
..|-.+++|+..-.+-+ +.......||+|||+||+|||+|+++.++.+. .+.+.+++++||++||+|+... .|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ps~W~~~fl~~~~~~~~---~~~~~~~~~~Lk~~Vr~~~~~~-~d~~ 84 (569)
T 2j5c_A 9 HHGMASMTGGQQMGRDLYDDDDKDRWIRTGGYQPTLWDFSTIQSFDSEYK---EEKHLMRAAGMIDQVKMMLQEE-VDSI 84 (569)
T ss_dssp --------------------------------------------------------CHHHHHHHHHHHHHHHHHC-CCHH
T ss_pred ccchhhcccccccCCCCCCCCcccccCCCCCCCCCcCCcccccCCCchhh---hHHHHHHHHHHHHHHHHHHhcc-ccHH
Confidence 34555667766555444 33344567999999999999999997654432 2456788999999999999865 4899
Q ss_pred chhhHHHHHHHhCcccccHHHHHHHHHHHH-hhhcCCCCCCCChhhHhHhhhhhhhcCceeccccccccccCCc-ccccc
Q 040521 109 EGLVMIDAVQRLGIEYLFKDEIEEILQRQY-IISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEG-RFSQF 186 (383)
Q Consensus 109 ~~L~lID~LQRLGIsyhFe~EI~~~L~~iy-~~~~~~~~~~~DL~~tAL~FRLLRqhGY~VSsDvF~~Fkd~~G-~F~~~ 186 (383)
++|+|||+||||||+|||++||+++|++|| +.+. ....|||+|||+|||||||||+||||||++|||++| +|++
T Consensus 85 ~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~---~~~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~- 160 (569)
T 2j5c_A 85 RRLELIDDLRRLGISCHFEREIVEILNSKYYTNNE---IDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKP- 160 (569)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTSSCC---SCTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCG-
T ss_pred HHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhccC---cccCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCcccc-
Confidence 999999999999999999999999999999 6532 135699999999999999999999999999999999 9999
Q ss_pred cccccHHHHHHHHHhhccCccCchHHHHHHHHHHHHHHHHHhcc-CchHHHHHHHhccCCCCCCcchhhchhhhHhhccC
Q 040521 187 NVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHL-DHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQG 265 (383)
Q Consensus 187 ~l~~DvkgLLsLYeAS~L~~~gE~ILdeA~~Fs~~~Lk~~~~~~-~~~L~~~V~~aL~~P~h~~l~RleaR~~yI~~Y~~ 265 (383)
++++||+|||||||||||++|||+|||||+.||++||++.+.++ +++|+++|+|||++|||+++||||||+ ||++|++
T Consensus 161 ~l~~dv~glL~LY~As~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~-yI~~Y~~ 239 (569)
T 2j5c_A 161 SLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARS-FIDAYKR 239 (569)
T ss_dssp GGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTTSSCC----CHHHHHHHHHHHHSCGGGCCSHHHHHH-HHHHHTT
T ss_pred chhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCccccCcHHHHHHH-HHHHhcc
Confidence 89999999999999999999999999999999999999988776 889999999999999999999999999 9999999
Q ss_pred CcccCHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCcc
Q 040521 266 ERRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPS 345 (383)
Q Consensus 266 ~~~~~~~~LLeLAKLDFN~~QslhQ~EL~~isrWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak 345 (383)
++++| ++||||||||||+||++||+||++|+||||++||.++|||||||+|||| ||++|++|||+||.+|+ .|||
T Consensus 240 ~~~~n-~~lLelAkldFn~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Y--fw~~a~~feP~~S~~Rl--~~aK 314 (569)
T 2j5c_A 240 RPDMN-PTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECY--YWTTGVVERRQHGYERI--MLTK 314 (569)
T ss_dssp CTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHH--HHHHHHCCCGGGHHHHH--HHHH
T ss_pred Ccccc-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHH--HHHHHhhcCCCccHHHH--HHHH
Confidence 99999 9999999999999999999999999999999999988999999999999 99999999999999999 9999
Q ss_pred ceeeEEEeeeccccccccccHHHHh
Q 040521 346 STLLTTYLMFMGRLMNLFSSQKLLL 370 (383)
Q Consensus 346 ~~vl~Tvv~~~dd~~d~~~s~e~~~ 370 (383)
.++++|++ ||+||.+||.|||.
T Consensus 315 ~~~litvi---DD~fD~ygT~eEl~ 336 (569)
T 2j5c_A 315 INALVTTI---DDVFDIYGTLEELQ 336 (569)
T ss_dssp HHHHHHHH---HHHHHTTCCHHHHH
T ss_pred HHHHHHHH---HHHhccCCCHHHHH
Confidence 99999998 99999999999976
No 6
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=4.9e-100 Score=793.86 Aligned_cols=305 Identities=25% Similarity=0.378 Sum_probs=272.7
Q ss_pred ccCCCCCCCCCCCCCCCcccccCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhCcccccHHHHH
Q 040521 52 YQKGCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIE 131 (383)
Q Consensus 52 ~~~r~~any~PsiW~d~fl~s~~~~~~~~~~~~~~~~~~~Lk~eVk~ml~~~~~d~~~~L~lID~LQRLGIsyhFe~EI~ 131 (383)
...||+||||||+||++|++|.++.+. .+.+.+++++||++||+|+... .|++++|+|||+||||||+|||++||+
T Consensus 3 ~~~r~~~~~~ps~W~~~fl~s~~~~~~---~~~~~~~~~~Lk~~V~~~~~~~-~d~~~~l~lvD~lqrLGi~~hF~~EI~ 78 (549)
T 1n1b_A 3 HQIRRSGNYQPALWDSNYIQSLNTPYT---EERHLDRKAELIVQVRILLKEK-MEPVQQLELIHDLKYLGLSDFFQDEIK 78 (549)
T ss_dssp ------------CCCHHHHHHCCCSTT---SHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred CcCCCCCCCCCCCCCCCcccCCCcchh---hhHHHHHHHHHHHHHHHHHhcc-cCHHHHHHhHHHHHhCCchhhhHHHHH
Confidence 346999999999999999986655432 2457788999999999999765 489999999999999999999999999
Q ss_pred HHHHHHHhhhcC---CCCCCCChhhHhHhhhhhhhcCceeccccccccccCCc-ccccccccccHHHHHHHHHhhccCcc
Q 040521 132 EILQRQYIISST---CGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEG-RFSQFNVSEDIGRLMEVYEASQLSIA 207 (383)
Q Consensus 132 ~~L~~iy~~~~~---~~~~~~DL~~tAL~FRLLRqhGY~VSsDvF~~Fkd~~G-~F~~~~l~~DvkgLLsLYeAS~L~~~ 207 (383)
++|++||+.+.. ......|||+|||+|||||||||+||||||++|||++| +|++ ++++||+|||||||||||++|
T Consensus 79 ~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~-~l~~d~~glL~LY~As~l~~~ 157 (549)
T 1n1b_A 79 EILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKA-SLAQDTKGMLQLYEASFLLRK 157 (549)
T ss_dssp HHHHHHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCG-GGGGCHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhhhccccccccccCChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccch-hhhhccHHHHHHHHHHhcCCC
Confidence 999999986421 11124699999999999999999999999999999999 9999 899999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHhc---c-CchHHHHHHHhccCCCCCCcchhhchhhhHhhccCCcccCHHHHHHHHhhhhh
Q 040521 208 GEEGLDEAGQFSAKMLNECMTH---L-DHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFN 283 (383)
Q Consensus 208 gE~ILdeA~~Fs~~~Lk~~~~~---~-~~~L~~~V~~aL~~P~h~~l~RleaR~~yI~~Y~~~~~~~~~~LLeLAKLDFN 283 (383)
||+|||||+.||++||++.+.+ + +++|+++|+|||++|+|+++||||||+ ||++|++++++| +.||||||||||
T Consensus 158 gE~iL~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~-yI~~Y~~~~~~n-~~lLelAkldFn 235 (549)
T 1n1b_A 158 GEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARW-FIDAYARRPDMN-PLIFELAKLNFN 235 (549)
T ss_dssp TCHHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHH-HHHHHHHCTTCC-HHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHH-HHHHhccccccc-HHHHHHHHHhHH
Confidence 9999999999999999999876 4 788999999999999999999999999 999999999999 999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeecccccccc
Q 040521 284 MVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLF 363 (383)
Q Consensus 284 ~~QslhQ~EL~~isrWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~d~~ 363 (383)
+||++||+||++|+||||++||.++|||||||+|||| ||++|++|||+||.+|+ .|||.++++|++ ||+||.+
T Consensus 236 ~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve~Y--fw~~a~~feP~~s~~Rl--~~aK~~~l~tvi---DD~yD~~ 308 (549)
T 1n1b_A 236 IIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESF--FWAVGMFEPHQHGYQRK--MAATIIVLATVI---DDIYDVY 308 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHH--HHHHHHCCSTTCHHHHH--HHHHHHHHHHHH---HHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHH--HHHHHHhcCCCCcHHHH--HHHHHHHHHHHH---HHHhccC
Confidence 9999999999999999999999888999999999999 99999999999999999 999999999998 9999999
Q ss_pred ccHHHHh
Q 040521 364 SSQKLLL 370 (383)
Q Consensus 364 ~s~e~~~ 370 (383)
||.||+.
T Consensus 309 gt~eEl~ 315 (549)
T 1n1b_A 309 GTLDELE 315 (549)
T ss_dssp SCHHHHH
T ss_pred CCHHHHH
Confidence 9999986
No 7
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=1.9e-86 Score=714.69 Aligned_cols=271 Identities=28% Similarity=0.481 Sum_probs=251.6
Q ss_pred HHHHHHHHHHHHhhcC--------CccchhhHHHHHHHhCcccccHHHHHHHHHHHHhhhcCC------CCCCCChhhHh
Q 040521 90 SRKLKDLKHIFSLVGG--------NSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTC------GGHLHDLQEVA 155 (383)
Q Consensus 90 ~~Lk~eVk~ml~~~~~--------d~~~~L~lID~LQRLGIsyhFe~EI~~~L~~iy~~~~~~------~~~~~DL~~tA 155 (383)
++-.+|+++++++.+. |++++|+|||+||||||+|||++||+++|+++|+.+... +....||++||
T Consensus 245 ~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tA 324 (785)
T 3s9v_A 245 KKCLDFLNFVLKKFGNHVPCHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTA 324 (785)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHH
Confidence 3457899999998643 889999999999999999999999999999999876421 12246999999
Q ss_pred HhhhhhhhcCceeccccccccccCCcccccc--cccccHHHHHHHHHhhccCccCchHHHHHHHHHHHHHHHHHhc----
Q 040521 156 LRFRLLRQEGYYVPADMFNNFMIKEGRFSQF--NVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTH---- 229 (383)
Q Consensus 156 L~FRLLRqhGY~VSsDvF~~Fkd~~G~F~~~--~l~~DvkgLLsLYeAS~L~~~gE~ILdeA~~Fs~~~Lk~~~~~---- 229 (383)
|+|||||||||+||||||++|+|++|+|+++ ++.+|++|||||||||||++|||+|||||+.||++||++.+..
T Consensus 325 l~FRlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~ 404 (785)
T 3s9v_A 325 MGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAF 404 (785)
T ss_dssp HHHHHHHHTTCCCCGGGGGGGBCTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHhcCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999983 2468999999999999999999999999999999999998753
Q ss_pred ----cCchHHHHHHHhccCCCCCCcchhhchhhhHhhccCCccc------------CHHHHHHHHhhhhhhhhhhhhHHH
Q 040521 230 ----LDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRW------------MLHVLKEIAKKDFNMVHALHHKEI 293 (383)
Q Consensus 230 ----~~~~L~~~V~~aL~~P~h~~l~RleaR~~yI~~Y~~~~~~------------~~~~LLeLAKLDFN~~QslhQ~EL 293 (383)
++++|+++|+|||++|||+++||||||+ ||++|++++.| | +.||||||||||+||++||+||
T Consensus 405 d~~~~~~~L~~eV~~aL~~P~~~~l~RleaR~-yI~~Y~~~~~~i~Kt~yr~~~~~n-~~lLelAKlDFN~~Q~~hq~EL 482 (785)
T 3s9v_A 405 DKWAFKKNIRGEVEYALKYPWHKSMPRLEARS-YIENYGPDDVWLGKTVYMMPYISN-EKYLELAKLDFNKVQSIHQTEL 482 (785)
T ss_dssp CTTCSSSCHHHHHHHHHHSCGGGCCHHHHHHH-HHHHCCTTCCEESSSEECCTTTSC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHhCCccccCchHHHHHH-HHHHhcccchhhhccccccccccc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999 99999988865 7 9999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeeccccccccccHHHHh
Q 040521 294 VQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSSQKLLL 370 (383)
Q Consensus 294 ~~isrWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~d~~~s~e~~~ 370 (383)
++|+||||++|| .+|||||||+|||| ||++|++||||||.+|+ .|||.++|+||+ ||+||++||.|||.
T Consensus 483 ~~lsrWwk~~~l-~~l~faRdr~ve~Y--fw~~~~~feP~~s~~R~--~~aK~~~l~tvi---DD~yD~ygT~eEl~ 551 (785)
T 3s9v_A 483 QDLRRWWKSSGF-TDLNFTRERVTEIY--FSPASFIFEPEFSKCRE--VYTKTSNFTVIL---DDLYDAHGSLDDLK 551 (785)
T ss_dssp HHHHHHHHHTTT-TSCSSSCCCHHHHH--HHHHHHSCSGGGHHHHH--HHHHHHHHHHHH---HHHHTSCCCHHHHH
T ss_pred HHHhHHHHHcCC-CcCccHHHHHHHHH--HHHHHhcCCccchHHHH--HHHHHHHHHHHH---HHHhccCCCHHHHH
Confidence 999999999999 59999999999999 99999999999999999 999999999999 99999999999996
No 8
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=2.2e-86 Score=716.77 Aligned_cols=271 Identities=30% Similarity=0.487 Sum_probs=248.8
Q ss_pred HHHHHHHHHHHHhhcC--------CccchhhHHHHHHHhCcccccHHHHHHHHHHHHhhhcCC------CCCCCChhhHh
Q 040521 90 SRKLKDLKHIFSLVGG--------NSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTC------GGHLHDLQEVA 155 (383)
Q Consensus 90 ~~Lk~eVk~ml~~~~~--------d~~~~L~lID~LQRLGIsyhFe~EI~~~L~~iy~~~~~~------~~~~~DL~~tA 155 (383)
++-.+|+++++++.+. |++++|+|||+||||||+|||++||+++|+++|+.+... .....||++||
T Consensus 273 ~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tA 352 (817)
T 3sdr_A 273 AKCLEFLNSVMIKFGNFVPCLYPVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTA 352 (817)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSSCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCCccCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHH
Confidence 4457899999998643 889999999999999999999999999999999876421 12246999999
Q ss_pred HhhhhhhhcCceeccccccccccCCcccccc--cccccHHHHHHHHHhhccCccCchHHHHHHHHHHHHHHHHHhc----
Q 040521 156 LRFRLLRQEGYYVPADMFNNFMIKEGRFSQF--NVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTH---- 229 (383)
Q Consensus 156 L~FRLLRqhGY~VSsDvF~~Fkd~~G~F~~~--~l~~DvkgLLsLYeAS~L~~~gE~ILdeA~~Fs~~~Lk~~~~~---- 229 (383)
|+|||||||||+||||||++|+|++|+|+++ ++.+|++|||||||||||++|||+|||||+.||++||++.+.+
T Consensus 353 l~FRlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~ 432 (817)
T 3sdr_A 353 LGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETS 432 (817)
T ss_dssp HHHHHHHHTTCCCCGGGGGGGBCC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGG
T ss_pred HHHHHHHHcCCCccHhHHHHHhhcCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999983 2468999999999999999999999999999999999998763
Q ss_pred ----cCchHHHHHHHhccCCCCCCcchhhchhhhHhhccCCccc------------CHHHHHHHHhhhhhhhhhhhhHHH
Q 040521 230 ----LDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRW------------MLHVLKEIAKKDFNMVHALHHKEI 293 (383)
Q Consensus 230 ----~~~~L~~~V~~aL~~P~h~~l~RleaR~~yI~~Y~~~~~~------------~~~~LLeLAKLDFN~~QslhQ~EL 293 (383)
.+++|+++|+|||++|||+++||||||+ ||++|++++.| | +.||||||||||+||++||+||
T Consensus 433 ~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~-yI~~Y~~~~~~i~Kt~yr~~~~~n-~~lLelAKlDFN~~Q~~hq~EL 510 (817)
T 3sdr_A 433 SAWNNKQNLSQEIKYALKTSWHASVPRVEAKR-YCQVYRPDYARIAKCVYKLPYVNN-EKFLELGKLDFNIIQSIHQEEM 510 (817)
T ss_dssp SHHHHHTTHHHHHHHHHHCCSTTCCHHHHHHH-HHTTCCTTCCEESSSEECCTTTSC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHhcCchhccChHHHHHH-HHHHhCccchhhhhhccccccccc-HHHHHHHHHHHHHHHHHhhhhh
Confidence 1367999999999999999999999999 99999998765 7 9999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeeccccccccccHHHHh
Q 040521 294 VQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSSQKLLL 370 (383)
Q Consensus 294 ~~isrWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~d~~~s~e~~~ 370 (383)
++|+||||++|| .+|||||||+|||| ||++|++||||||.+|+ .|||.++|+||+ ||+||++||.|||.
T Consensus 511 ~~lsrWwk~~~l-~~l~faRdr~ve~Y--fw~~~~~feP~~s~~R~--~~aK~~~l~tvi---DD~yD~ygT~eEl~ 579 (817)
T 3sdr_A 511 KNVTSWFRDSGL-PLFTFARERPLEFY--FLVAAGTYEPQYAKCRF--LFTKVACLQTVL---DDMYDTYGTLDELK 579 (817)
T ss_dssp HHHHHHHHHSSG-GGCTTSCCCHHHHH--HHHHTTSCCGGGHHHHH--HHHHHHHHHHHH---HHHHHTTSCHHHHH
T ss_pred hhhceeHHhcCC-CcCccHHHHHHHHH--HHHHHhccCccchHHHH--HHHHHHHHHHHH---HHHcccCCCHHHHH
Confidence 999999999999 59999999999999 99999999999999999 999999999999 99999999999996
No 9
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=8.7e-86 Score=707.96 Aligned_cols=269 Identities=27% Similarity=0.480 Sum_probs=250.5
Q ss_pred HHHHHHHHHHHHhhcC--------CccchhhHHHHHHHhCcccccHHHHHHHHHHHHhhhcCC------CCCCCChhhHh
Q 040521 90 SRKLKDLKHIFSLVGG--------NSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTC------GGHLHDLQEVA 155 (383)
Q Consensus 90 ~~Lk~eVk~ml~~~~~--------d~~~~L~lID~LQRLGIsyhFe~EI~~~L~~iy~~~~~~------~~~~~DL~~tA 155 (383)
++-.+|+++++++.+. |++++|+|||+||||||+|||++||+++|+++|+.+... .....||++||
T Consensus 221 ~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tA 300 (764)
T 3p5p_A 221 EKCFTFLNNLLDKFGGCVPCMYSIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTA 300 (764)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSCCCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHH
Confidence 4457899999988642 889999999999999999999999999999999876421 12246999999
Q ss_pred HhhhhhhhcCceeccccccccccCCcccccc--cccccHHHHHHHHHhhccCccCchHHHHHHHHHHHHHHHHHhc---c
Q 040521 156 LRFRLLRQEGYYVPADMFNNFMIKEGRFSQF--NVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTH---L 230 (383)
Q Consensus 156 L~FRLLRqhGY~VSsDvF~~Fkd~~G~F~~~--~l~~DvkgLLsLYeAS~L~~~gE~ILdeA~~Fs~~~Lk~~~~~---~ 230 (383)
|+|||||||||+||||||++|+|++|+|+++ ++.+|++|||||||||||++|||+|||||+.||++||++.+.+ +
T Consensus 301 l~FRlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~ 380 (764)
T 3p5p_A 301 LGLRTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKIST 380 (764)
T ss_dssp HHHHHHHHTTCCCCGGGGGGGBCTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHhcCCCccHhHHHhhhcCCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999999974 4689999999999999999999999999999999999998763 5
Q ss_pred CchHHHHHHHhccCCCCCCcchhhchhhhHhhccCCccc------------CHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 040521 231 DHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRW------------MLHVLKEIAKKDFNMVHALHHKEIVQVTK 298 (383)
Q Consensus 231 ~~~L~~~V~~aL~~P~h~~l~RleaR~~yI~~Y~~~~~~------------~~~~LLeLAKLDFN~~QslhQ~EL~~isr 298 (383)
+++|+++|+|||++|||+++||||||+ ||++|++++.| | +.||||||||||+||++||+||++|+|
T Consensus 381 ~~~L~~eV~~aL~~P~~~~l~Rlear~-yI~~Y~~~~~~i~Kt~yr~~~~~n-~~lLelAKlDFN~~Q~~hq~EL~~l~r 458 (764)
T 3p5p_A 381 NTKLFKEIEYVVEYPWHMSIPRLEARS-YIDSYDDNYVWQRKTLYRMPSLSN-SKCLELAKLDFNIVQSLHQEELKLLTR 458 (764)
T ss_dssp SSHHHHHHHHHHHSCGGGCCHHHHHHH-HHHHCCTTCCEESSSEECCTTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHhcCchhccchHHHHHH-HHHHhcccchhhhccccccccccc-HHHHHHHHHHHHHHHHHhHHHhhhhce
Confidence 788999999999999999999999999 99999998775 7 999999999999999999999999999
Q ss_pred HHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeeccccccccccHHHHh
Q 040521 299 WWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSSQKLLL 370 (383)
Q Consensus 299 WWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~d~~~s~e~~~ 370 (383)
|||++|| .+|||||||+|||| ||++| ||||||.+|+ .|||.++|+||+ ||+||++||.|||.
T Consensus 459 Wwk~~~l-~~l~faRdr~ve~Y--fw~~~--feP~~s~~R~--~~aK~~~l~tvi---DD~yD~ygT~eEl~ 520 (764)
T 3p5p_A 459 WWKESGM-ADINFTRHRVAEVY--FSSAT--FEPEYSATRI--AFTKIGCLQVLF---DDMADIFATLDELK 520 (764)
T ss_dssp HHHHTST-TTTTCCHHHHHHHH--HHTCC--CCGGGHHHHH--HHHHHHHHHHHH---HHHHHHTCCHHHHH
T ss_pred eHHhcCC-CcCccHHHHHHHHH--HHHHh--CCccchHHHH--HHHHHHHHHHHH---HHHcccCCCHHHHH
Confidence 9999999 59999999999999 99999 9999999999 999999999999 99999999999996
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=1.1e-84 Score=695.26 Aligned_cols=268 Identities=30% Similarity=0.423 Sum_probs=244.9
Q ss_pred HHHHHHHHHHHHhhc--------CCccchhhHHHHHHHhCcccccHHHHHHHHHHHHhhhcCCC------CCCCChhhHh
Q 040521 90 SRKLKDLKHIFSLVG--------GNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCG------GHLHDLQEVA 155 (383)
Q Consensus 90 ~~Lk~eVk~ml~~~~--------~d~~~~L~lID~LQRLGIsyhFe~EI~~~L~~iy~~~~~~~------~~~~DL~~tA 155 (383)
++-.+|+++++++.+ .|++++|+|||+||||||+|||++||+++|+++|+.|.... ....||++||
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tA 299 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTA 299 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHH
Confidence 345778888888753 27899999999999999999999999999999998754211 1246999999
Q ss_pred HhhhhhhhcCceeccccccccccCCcccccc--cccccHHHHHHHHHhhccCccCchHHHHHHHHHHHHHHHHHhc----
Q 040521 156 LRFRLLRQEGYYVPADMFNNFMIKEGRFSQF--NVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTH---- 229 (383)
Q Consensus 156 L~FRLLRqhGY~VSsDvF~~Fkd~~G~F~~~--~l~~DvkgLLsLYeAS~L~~~gE~ILdeA~~Fs~~~Lk~~~~~---- 229 (383)
|+|||||||||+||||||++|+ ++|+|+++ ++.+|++|||+|||||||++|||+|||||+.||+++|++.+..
T Consensus 300 L~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~ 378 (727)
T 3pya_A 300 MAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELI 378 (727)
T ss_dssp HHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999 88999963 3578999999999999999999999999999999999998753
Q ss_pred ----cCchHHHHHHHhccCCCCCCcchhhchhhhHhhccCCcc-------------cCHHHHHHHHhhhhhhhhhhhhHH
Q 040521 230 ----LDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERR-------------WMLHVLKEIAKKDFNMVHALHHKE 292 (383)
Q Consensus 230 ----~~~~L~~~V~~aL~~P~h~~l~RleaR~~yI~~Y~~~~~-------------~~~~~LLeLAKLDFN~~QslhQ~E 292 (383)
.+++|+++|+|||++|+|+++||+|||+ ||++|+++++ +| +.||||||+|||+||++||+|
T Consensus 379 dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~-yI~~Y~~~~~~~i~Kt~yr~~~~~n-~~lLelAKlDFN~~Q~~hq~E 456 (727)
T 3pya_A 379 DKWIIMKDLPGEIGFALEIPWYASLPRVETRF-YIDQYGGENDVWIGKTLYRMPYVNN-NGYLELAKQDYNNCQAQHQLE 456 (727)
T ss_dssp CSSEECSCHHHHHHHHHHSCGGGCCHHHHHHH-HHHHCCGGGCEEESSSEECCTTTSC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHhcCcHhcCChHHHHHH-HHHHhccCcchhhhhhhcccccccc-HHHHHHHHHhHHHHHHHhHHH
Confidence 2478999999999999999999999999 9999997665 47 999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeeccccccccccHHHHh
Q 040521 293 IVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSSQKLLL 370 (383)
Q Consensus 293 L~~isrWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~d~~~s~e~~~ 370 (383)
|++|+|||||+||. +|||||||+|||| ||++|++||||||.+|+ .|||.++|+||+ ||+||++| |||.
T Consensus 457 L~~lsrWwk~~~l~-~l~faRdr~ve~Y--fw~~~~~feP~~s~~R~--~~aK~~~l~tvi---DD~yD~yG--eEl~ 524 (727)
T 3pya_A 457 WDIFQKWYEENRLS-EWGVRRSELLECY--YLAAATIFESERSHERM--VWAKSSVLVKAI---SSSFGESS--DSRR 524 (727)
T ss_dssp HHHHHHHHHHTTGG-GGTCCHHHHHHHH--HHHHTTSCCGGGHHHHH--HHHHHHHHHHHH---HHHHCSSH--HHHH
T ss_pred HhhhheeHHhcCcc-cCCchhhHHHHHH--HHHHhccCCchhHHHHH--HHHHHHHHHHHH---HHHHhcch--HHHH
Confidence 99999999999995 6999999999999 99999999999999999 999999999999 99999999 8885
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=99.00 E-value=7.2e-12 Score=120.67 Aligned_cols=82 Identities=11% Similarity=-0.034 Sum_probs=70.1
Q ss_pred hhhhhhhhhHHHHHH-HHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeeccccc
Q 040521 282 FNMVHALHHKEIVQV-TKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLM 360 (383)
Q Consensus 282 FN~~QslhQ~EL~~i-srWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~ 360 (383)
|..-...|.+|+++. ++||+++|+.+ +||+|||+++|| ||.+|++++|+++.+|+. ..+|.+.++|++ ||+|
T Consensus 11 ~p~~~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~--~~~~~~~~~P~~~~~rl~-~~ak~~~~~~~~---DD~~ 83 (337)
T 1ps1_A 11 LPGRQSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGG--YADLASRFYPHATGADLD-LGVDLMSWFFLF---DDLF 83 (337)
T ss_dssp SCCCCCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTC--HHHHHHHHCTTCCTHHHH-HHHHHHHHHHHH---HHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCC--HHHHHHHHCCCCCHHHHH-HHHHHHHHHHHH---hhcc
Confidence 344456788888654 56999999975 699999999999 999999999999999984 678888888888 9999
Q ss_pred ccc--ccHHHHh
Q 040521 361 NLF--SSQKLLL 370 (383)
Q Consensus 361 d~~--~s~e~~~ 370 (383)
|.+ ||.||+.
T Consensus 84 D~~~~~~~ee~~ 95 (337)
T 1ps1_A 84 DGPRGENPEDTK 95 (337)
T ss_dssp SSGGGGCHHHHH
T ss_pred CCcCCCCHHHHH
Confidence 998 6999865
No 12
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=98.96 E-value=2.2e-11 Score=116.47 Aligned_cols=80 Identities=8% Similarity=-0.085 Sum_probs=67.4
Q ss_pred hhhhhhhhhHHHHHHHH-HHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeeccccc
Q 040521 282 FNMVHALHHKEIVQVTK-WWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLM 360 (383)
Q Consensus 282 FN~~QslhQ~EL~~isr-WWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~ 360 (383)
|..-...|.+|+++.++ ||+++|+.++ ||+|||+++|| ||.++++++|+++.+|+. ..+|...++|++ ||+|
T Consensus 21 ~p~~~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~--~~~~~~~~~P~~~~~rl~-~~ak~~~~~~~~---DD~~ 93 (320)
T 3bny_A 21 FQPLCHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAG--FSRVTCLYFPKALDDRIH-FACRLLTVLFLI---DDLL 93 (320)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHC--HHHHHHHHCTTSCTTTHH-HHHHHHHHHHHH---HHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcC--chhhHhhhCCCCCHHHHH-HHHHHHHHHHHh---hccc
Confidence 44556778899987655 5599999765 99999999999 999999999999999994 568888888888 9999
Q ss_pred cccccHHHH
Q 040521 361 NLFSSQKLL 369 (383)
Q Consensus 361 d~~~s~e~~ 369 (383)
|. |+.+|+
T Consensus 94 D~-~~~~e~ 101 (320)
T 3bny_A 94 EY-MSFEEG 101 (320)
T ss_dssp TT-SCHHHH
T ss_pred cc-CChhhH
Confidence 99 677653
No 13
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=98.92 E-value=3.6e-11 Score=113.62 Aligned_cols=75 Identities=7% Similarity=-0.189 Sum_probs=63.4
Q ss_pred hhhhHHHHHHH-HHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeecccccccccc
Q 040521 287 ALHHKEIVQVT-KWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSS 365 (383)
Q Consensus 287 slhQ~EL~~is-rWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~d~~~s 365 (383)
.-|.+|+++.+ +||+++|+. ++||+|||+++|| ||.++++++|+++.+|+. ..+|...++|++ ||+||. |+
T Consensus 12 ~P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~--~~~~~~~~~P~~~~~rl~-~~~k~~~~~~~~---DD~~D~-~~ 83 (300)
T 1di1_A 12 HPRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAK--FSEVTCLYFPLALDDRIH-FACRLLTVLFLI---DDVLEH-MS 83 (300)
T ss_dssp CTTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHC--HHHHHHHHCTTSCTTTHH-HHHHHHHHHHHH---HHHHHH-SC
T ss_pred CcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcC--cchhhhhcCCCCCHHHHH-HHHHHHHHHHHH---Hhcccc-CC
Confidence 45778887655 555999997 5799999999999 999999999999999994 577888888888 999999 66
Q ss_pred HHHH
Q 040521 366 QKLL 369 (383)
Q Consensus 366 ~e~~ 369 (383)
.+|+
T Consensus 84 ~~e~ 87 (300)
T 1di1_A 84 FADG 87 (300)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=97.85 E-value=5e-07 Score=89.58 Aligned_cols=69 Identities=4% Similarity=-0.175 Sum_probs=57.2
Q ss_pred HHHHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeeccccccc--cc-cHHHHh
Q 040521 295 QVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNL--FS-SQKLLL 370 (383)
Q Consensus 295 ~isrWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~d~--~~-s~e~~~ 370 (383)
++.+||+++|+.. -+++|+|+++|| ||.++++++|+++..|+. ..++...+++++ ||+||- .| +.+++.
T Consensus 65 ~~~~W~~~~gl~~-~~~~r~r~~~~~--~~~laa~~~P~as~erL~-l~a~~~~w~f~~---DD~~D~~~~g~~~~~~~ 136 (382)
T 3kb9_A 65 TTRTWLLEKRLMP-ADKVEEYADGLC--YTDLMAGYYLGAPDEVLQ-AIADYSAWFFVW---DDRHDRDIVHGRAGAWR 136 (382)
T ss_dssp HHHHHHHHTTSSC-HHHHHHHHHHHC--HHHHHHTTSTTCCHHHHH-HHHHHHHHHHHH---HHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHhCC--HHHHHHHhCCCCCHHHHH-HHHHHHHHHHHH---hhcccccccccCHHHHH
Confidence 4788999999963 489999999999 999999999999999995 566666666666 999996 23 777653
No 15
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.75 E-value=0.00032 Score=76.57 Aligned_cols=45 Identities=2% Similarity=-0.085 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 040521 54 KGCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFS 101 (383)
Q Consensus 54 ~r~~any~PsiW~d~fl~s~~~~~~~~~~~~~~~~~~~Lk~eVk~ml~ 101 (383)
.||+|||+|++|+++|++|+.+++. .+.+.+++++|+++||+|+.
T Consensus 24 ~Rrsany~Ps~W~~~~i~sl~~~~~---~~~~~~~~~~Lie~VK~~l~ 68 (817)
T 3sdr_A 24 IRRTANPHPNVWGYDLVHSLKSPYI---DSSYRERAEVLVSEIKAMLN 68 (817)
T ss_dssp -----------CHHHHHHTCCCGGG---SHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCeeeccCCccc---chhHHHHHHHHHHHHHHHhc
Confidence 7999999999999999999987763 36678889999999999997
No 16
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=35.65 E-value=1.2e+02 Score=22.81 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=39.5
Q ss_pred HHHHHHHhh---cCCccchhhHHHHHHHhCcccccHHHHHHHHHHHHhhhcCCCCC-CCChhhHhHhhhhhh-hcCceec
Q 040521 95 DLKHIFSLV---GGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGH-LHDLQEVALRFRLLR-QEGYYVP 169 (383)
Q Consensus 95 eVk~ml~~~---~~d~~~~L~lID~LQRLGIsyhFe~EI~~~L~~iy~~~~~~~~~-~~DL~~tAL~FRLLR-qhGY~VS 169 (383)
+++.++... ++..+..=++...+.++|++ ++|+++++..+=.. +.... ..+. ..+|.-.-.+ +.|+.++
T Consensus 11 ~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~---~~~~~~i~~~~D~d--~dG~i~~~EF-~~~~~~~~~~~~~g~~lP 84 (95)
T 1c07_A 11 KYDEIFLKTDKDMDGFVSGLEVREIFLKTGLP---STLLAHIWSLCDTK--DCGKLSKDQF-ALAFHLISQKLIKGIDPP 84 (95)
T ss_dssp HHHHHHHHHCTTCSSEECHHHHHHHHHTTTCC---HHHHHHHHHHHCTT--CSSSEETTTH-HHHHHHHHHHHTSCCCCC
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCC---HHHHHHHHHHHCCC--CCCcCCHHHH-HHHHHHHHHHHHcCCCCC
Confidence 344455433 34556777888899999976 67777766544111 11111 2233 2333333334 7899887
Q ss_pred cc
Q 040521 170 AD 171 (383)
Q Consensus 170 sD 171 (383)
..
T Consensus 85 ~~ 86 (95)
T 1c07_A 85 HV 86 (95)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 17
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=32.01 E-value=1.1e+02 Score=23.72 Aligned_cols=75 Identities=16% Similarity=0.067 Sum_probs=46.8
Q ss_pred HHHHHHHhh---cCCccchhhHHHHHHHhCcccccHHHHHHHHHHHHhhhcCCCCCCCChhhHhHhhhhhhhcCceeccc
Q 040521 95 DLKHIFSLV---GGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPAD 171 (383)
Q Consensus 95 eVk~ml~~~---~~d~~~~L~lID~LQRLGIsyhFe~EI~~~L~~iy~~~~~~~~~~~DL~~tAL~FRLLRqhGY~VSsD 171 (383)
+++.++... ++..+..=++...+.++|++ ++|+++++..+=.. +......+=...+|.-.-+.|+|+.++.+
T Consensus 12 ~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~---~~~l~~i~~~~D~d--~dG~i~~~EF~~~~~~~~~~~~g~~~~~~ 86 (99)
T 1qjt_A 12 VYEKYYRQVEAGNTGRVLALDAAAFLKKSGLP---DLILGKIWDLADTD--GKGVLSKQEFFVALRLVACAQNGLEVSLS 86 (99)
T ss_dssp HHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSC---HHHHHHHHHHHCCS--SSSSCCSHHHHHHHHHHHHHTTTCCSSGG
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCC---HHHHHHHHHHHCCC--CCCcCCHHHHHHHHHHHHHHHcCCCCChh
Confidence 344444433 23456677888889999986 67777766554111 11112234456677777889999999987
Q ss_pred ccc
Q 040521 172 MFN 174 (383)
Q Consensus 172 vF~ 174 (383)
.+.
T Consensus 87 ~l~ 89 (99)
T 1qjt_A 87 SLS 89 (99)
T ss_dssp GCS
T ss_pred hcc
Confidence 654
No 18
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=30.64 E-value=81 Score=23.70 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhc---CCccchhhHHHHHHHhCcccccHHHHHHHHHHHHhhhcCCCCCCCChhhHhHhhhhhhhcCceec
Q 040521 93 LKDLKHIFSLVG---GNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVP 169 (383)
Q Consensus 93 k~eVk~ml~~~~---~d~~~~L~lID~LQRLGIsyhFe~EI~~~L~~iy~~~~~~~~~~~DL~~tAL~FRLLRqhGY~VS 169 (383)
+++++.++.... +..+..=++...++++|++ ++|+++++..+=.. +.....-+=...+|.-.-.+|.|+.++
T Consensus 8 ~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~---~~~~~~i~~~~D~d--~dG~i~~~EF~~~~~~~~~~~~g~~lp 82 (92)
T 1fi6_A 8 RQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLP---ILELSHIWELSDFD--KDGALTLDEFCAAFHLVVARKNGYDLP 82 (92)
T ss_dssp HHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSC---HHHHHHHHHHHCTT--CSSEEEHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC---HHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHHHcCCCCC
Confidence 345666665432 3457777888899999976 56777766543111 000011111223343334567899988
Q ss_pred cc
Q 040521 170 AD 171 (383)
Q Consensus 170 sD 171 (383)
+.
T Consensus 83 ~~ 84 (92)
T 1fi6_A 83 EK 84 (92)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 19
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=29.61 E-value=24 Score=38.38 Aligned_cols=41 Identities=10% Similarity=-0.061 Sum_probs=15.2
Q ss_pred CCCCCCCCCCcccccCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 040521 59 SDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFS 101 (383)
Q Consensus 59 ny~PsiW~d~fl~s~~~~~~~~~~~~~~~~~~~Lk~eVk~ml~ 101 (383)
+|+|++|+++++.++.++.... ..+.++.+.+++++|+|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~ 45 (785)
T 3s9v_A 5 EFPPGFWKDDLIDSLTSSHKVA--ASDEKRIETLISEIKNMFR 45 (785)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCcccccccCCCccccC--cchhHHHHHHHHHHHHHhh
Confidence 7899999999999887666432 3456778889999999995
No 20
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=24.21 E-value=41 Score=24.85 Aligned_cols=28 Identities=29% Similarity=0.583 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhcCCccchhhHHHHHHHh
Q 040521 92 KLKDLKHIFSLVGGNSFEGLVMIDAVQRL 120 (383)
Q Consensus 92 Lk~eVk~ml~~~~~d~~~~L~lID~LQRL 120 (383)
|.+|+|..|+.. .|.++++-++.+||-|
T Consensus 21 lIeE~Rh~Lk~T-ensfeQItfmqalQLl 48 (58)
T 1pd3_A 21 LIEEVRHRLKIT-ENSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHTCCCC-TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-hchHHHHHHHHHHHHH
Confidence 455555555433 6899999999999865
Done!