BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040524
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HBT|A Chain A, Crystal Structure Of Hif Prolyl Hydroxylase Egln-1 In
Complex With A Biologically Active Inhibitor
pdb|2HBU|A Chain A, Crystal Structure Of Hif Prolyl Hydroxylase Egln-1 In
Complex With A Biologically Active Inhibitor
Length = 247
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 55 WHDRRRPVRHSFKYPVRYAL----FDLDHAPQAPPDHLSAGEARRVAETNGP 102
W DRR P Y RYA+ FD D +A +L+ + RV E N P
Sbjct: 188 WSDRRNPHEVQPAYATRYAITVWYFDADERARAKVKYLTGEKGVRV-ELNKP 238
>pdb|2G19|A Chain A, Cellular Oxygen Sensing: Crystal Structure Of Hypoxia-
Inducible Factor Prolyl Hydroxylase (Phd2)
Length = 244
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 55 WHDRRRPVRHSFKYPVRYAL----FDLDHAPQAPPDHLSAGEARRVAETNGP 102
W DRR P Y RYA+ FD D +A +L+ + RV E N P
Sbjct: 188 WSDRRNPHEVQPAYATRYAITVWYFDADERARAKVKYLTGEKGVRV-ELNKP 238
>pdb|2G1M|A Chain A, Cellular Oxygen Sensing: Crystal Structure Of Hypoxia-
Inducible Factor Prolyl Hydroxylase (Phd2)
pdb|3HQU|A Chain A, Phd2:fe:un9:partial Hif1-Alpha Substrate Complex
Length = 246
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 55 WHDRRRPVRHSFKYPVRYAL----FDLDHAPQAPPDHLSAGEARRVAETNGP 102
W DRR P Y RYA+ FD D +A +L+ + RV E N P
Sbjct: 187 WSDRRNPHEVQPAYATRYAITVWYFDADERARAKVKYLTGEKGVRV-ELNKP 237
>pdb|2Y33|A Chain A, S-Nitrosylated Phd2 (Gsno Soaked) In Complex With Zn(Ii)
And Un9
pdb|2Y34|A Chain A, S-Nitrosylated Phd2 (No Exposed) In Complex With Fe(Ii)
And Un9
Length = 252
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 55 WHDRRRPVRHSFKYPVRYAL----FDLDHAPQAPPDHLSAGEARRVAETNGP 102
W DRR P Y RYA+ FD D +A +L+ + RV E N P
Sbjct: 193 WSDRRNPHEVQPAYATRYAITVWYFDADERARAKVKYLTGEKGVRV-ELNKP 243
>pdb|3HQR|A Chain A, Phd2:mn:nog:hif1-Alpha Substrate Complex
Length = 246
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 55 WHDRRRPVRHSFKYPVRYAL----FDLDHAPQAPPDHLSAGEARRVAETNGP 102
W DRR P Y RYA+ FD D A +L+ + RV E N P
Sbjct: 187 WSDRRNPHEVQPAYATRYAITVWYFDADERAAAKVKYLTGEKGVRV-ELNKP 237
>pdb|3OUH|A Chain A, Phd2-R127 With Jnj41536014
pdb|3OUJ|A Chain A, Phd2 With 2-Oxoglutarate
Length = 237
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 55 WHDRRRPVRHSFKYPVRYAL----FDLDHAPQAPPDHLSAGEARRV 96
W DRR P Y RYA+ FD D +A +L+ + RV
Sbjct: 188 WSDRRNPHEVQPAYATRYAITVWYFDADERARAKVKYLTGEKGVRV 233
>pdb|1QMH|A Chain A, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMH|B Chain B, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
Length = 347
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 56 HDRRRPVRHSFKYPVRYALFDLDHAPQAPPDHLSAGEARRVAETNGPVLLLTIP 109
H + +RH F YP + + +P A + L GE + + G VLL +P
Sbjct: 150 HQQTTLLRHGF-YPAGGGVVATEVSPVASFNTLQLGERGNIVQMRGEVLLAGVP 202
>pdb|1QMI|A Chain A, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMI|B Chain B, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMI|C Chain C, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMI|D Chain D, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
Length = 347
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 56 HDRRRPVRHSFKYPVRYALFDLDHAPQAPPDHLSAGEARRVAETNGPVLLLTIP 109
H + +RH F YP + + +P A + L GE + + G VLL +P
Sbjct: 150 HQQTTLLRHGF-YPAGGGVVATEVSPVASFNTLQLGERGNIVQXRGEVLLAGVP 202
>pdb|3KGD|A Chain A, Crystal Structure Of E. Coli Rna 3' Cyclase
pdb|3KGD|B Chain B, Crystal Structure Of E. Coli Rna 3' Cyclase
pdb|3KGD|C Chain C, Crystal Structure Of E. Coli Rna 3' Cyclase
pdb|3KGD|D Chain D, Crystal Structure Of E. Coli Rna 3' Cyclase
Length = 358
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 56 HDRRRPVRHSFKYPVRYALFDLDHAPQAPPDHLSAGEARRVAETNGPVLLLTIP 109
H + +RH F YP + + +P A + L GE + + G VLL +P
Sbjct: 169 HQQTTLLRHGF-YPAGGGVVATEVSPVASFNTLQLGERGNIVQMRGEVLLAGVP 221
>pdb|3TUT|A Chain A, Crystal Structure Of Rtca.Atp Binary Complex
pdb|3TUX|A Chain A, Crystal Structure Of Rtca.Atp.Mn Ternary Complex
pdb|3TV1|A Chain A, Crystal Structure Of Rtca.Amp Product Complex
pdb|3TV1|B Chain B, Crystal Structure Of Rtca.Amp Product Complex
pdb|3TW3|A Chain A, Crystal Structure Of Rtca.Atp.Co Ternary Complex
Length = 358
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 56 HDRRRPVRHSFKYPVRYALFDLDHAPQAPPDHLSAGEARRVAETNGPVLLLTIP 109
H + +RH F YP + + +P A + L GE + + G VLL +P
Sbjct: 169 HQQTTLLRHGF-YPAGGGVVATEVSPVASFNTLQLGERGNIVQMRGEVLLAGVP 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,297,515
Number of Sequences: 62578
Number of extensions: 242337
Number of successful extensions: 439
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 11
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)