Query 040524
Match_columns 238
No_of_seqs 108 out of 538
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 09:16:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07103 DUF1365: Protein of u 100.0 1.6E-70 3.6E-75 491.1 19.1 188 47-238 1-235 (254)
2 COG3496 Uncharacterized conser 100.0 1.9E-64 4.1E-69 440.9 8.1 189 45-238 5-232 (261)
3 PRK05461 apaG CO2+/MG2+ efflux 37.1 1.6E+02 0.0034 24.1 6.7 57 120-193 50-116 (127)
4 cd07264 Glo_EDI_BRP_like_15 Th 29.0 42 0.00092 24.9 2.0 22 137-158 96-117 (125)
5 cd09011 Glo_EDI_BRP_like_23 Th 26.0 61 0.0013 24.3 2.4 23 137-159 90-112 (120)
6 PF12681 Glyoxalase_2: Glyoxal 25.6 72 0.0016 22.9 2.7 23 136-158 80-102 (108)
7 PF15183 MRAP: Melanocortin-2 23.5 44 0.00094 25.9 1.1 52 9-70 37-88 (90)
8 PHA03283 envelope glycoprotein 22.6 5.7E+02 0.012 26.1 8.9 50 161-217 190-239 (542)
9 cd06588 PhnB_like Escherichia 21.8 65 0.0014 24.9 1.9 23 136-158 100-122 (128)
10 PF07411 DUF1508: Domain of un 20.8 1.1E+02 0.0024 20.6 2.7 18 173-190 2-19 (49)
11 COG3422 Uncharacterized conser 20.5 1.2E+02 0.0027 21.9 2.9 18 171-188 9-26 (59)
12 KOG4321 Predicted phosphate ac 20.2 60 0.0013 28.7 1.5 46 117-170 55-100 (279)
No 1
>PF07103 DUF1365: Protein of unknown function (DUF1365); InterPro: IPR010775 This family consists of several bacterial and plant proteins of around 250 residues in length. The function of this family is unknown.
Probab=100.00 E-value=1.6e-70 Score=491.09 Aligned_cols=188 Identities=40% Similarity=0.648 Sum_probs=168.0
Q ss_pred eeEEEEEEEeecCCCCCCcccccceEEEEeCCCCCCCC------------------CCCCCh-----hh-----------
Q 040524 47 VSLYEGTVWHDRRRPVRHSFKYPVRYALFDLDHAPQAP------------------PDHLSA-----GE----------- 92 (238)
Q Consensus 47 ~~ly~g~V~H~R~~P~~H~F~Y~~~~~~lDLDel~~~~------------------~Dhl~~-----~~----------- 92 (238)
|+||.|+|+|+|+.|++|+|+|+++|+++||||+++++ +|||+. ++
T Consensus 1 S~ly~g~v~H~R~~P~~h~F~Y~~~~~~lDLd~l~~~~~~~~~fs~~r~~l~sf~~~Dyl~~~~~~~~~~l~~~v~~~l~ 80 (254)
T PF07103_consen 1 SALYVGRVRHRRFRPKRHRFSYPVFMLLLDLDELEQLFRKSRLFSRNRFNLFSFRDRDYLGDPSGSLDGSLREWVEALLA 80 (254)
T ss_pred CeEEEEEEEEccCCCCCceEecceEEEEEEcchhhhccccccccccCCccEeEEeHHHcCCCCCCChhHHHHHHHHHhhh
Confidence 68999999999999999999999999999999999653 489742 11
Q ss_pred hcccccCCCcEEEEecCCccceeeCccEEEEEEeCCCCccceeEEEEEeeCCCCCceEEEEecCCCC---------ccCc
Q 040524 93 ARRVAETNGPVLLLTIPPSVGYEQNPLSLYYCYDVEGSTQCLKKCIAEVTNTPWGERVTFVFNPKSD---------LVAK 163 (238)
Q Consensus 93 ~~~i~~~~g~I~LLT~pR~lGy~FNPVSfYyc~d~~~~~~~L~avlaEV~NTPfgERH~Yvl~~~~~---------~~~K 163 (238)
+.|++.. |+|+|||+||+|||+|||||||||||++| +|++||||||||||||||+|++++++. .++|
T Consensus 81 ~~g~~~~-g~I~Llt~pR~lGy~FNPvSfyyc~d~~~---~l~~vvaEV~NTPfgErH~Yvl~~~~~~~~~~~~~~~~~K 156 (254)
T PF07103_consen 81 EHGIDPD-GRIYLLTMPRYLGYVFNPVSFYYCYDADG---QLRAVVAEVNNTPFGERHCYVLPADQGRPIDESFRFTFPK 156 (254)
T ss_pred hcCCCCC-CEEEEEechhhCCeEeCCeEEEEEEcCCC---CEEEEEEEEeCCCCCcEEEEEecccccCccCcCceeEecc
Confidence 1344445 99999999999999999999999999998 599999999999999999999998521 5899
Q ss_pred ceeeCCCCCCCceEEEEEeCCCCeeEEEEEEecCC--CCcEEEEEeeeecccCChhh--hHHHHhhhhHHhhheeeeeC
Q 040524 164 PLHVSPFMDMHGNWSIRANAPGENLLVEISVQHPE--LGDYFVATLKAKRVSSQLMS--DQDMFFWLMPHKVAFWIYWH 238 (238)
Q Consensus 164 ~FHVSPF~~m~g~Y~f~~~~p~~~l~i~I~~~~~~--~~~~f~Atl~g~r~plt~~~--~l~~~~p~~tlkvi~~IyWQ 238 (238)
+|||||||||+|+|+|+++.|++++.|+|++.+++ +++.|+|+|+|+++|+|+++ +...++|+||+||+++||||
T Consensus 157 ~FHVSPF~~~~g~Y~~~~~~p~~~l~v~I~~~~~~~~~~~~~~Atl~~~~~plt~~~l~~~~~~~P~~t~~v~~~I~wq 235 (254)
T PF07103_consen 157 AFHVSPFNPMDGRYRFRFRDPGDRLSVRIDLYDDRDGGQKVFDATLRGKRRPLTTASLLRALLRYPLMTFKVVARIHWQ 235 (254)
T ss_pred eeeECCCCCCCCEEEEEEcCCCcceEEEEEeecCccCCCceEEEEeEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998443 47899999999999999999 34556999999999999998
No 2
>COG3496 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.9e-64 Score=440.92 Aligned_cols=189 Identities=34% Similarity=0.538 Sum_probs=171.4
Q ss_pred CCeeEEEEEEEeecCCCCCCcccccceEEEEeCCCCCCCC------------------CCCCChh------------hhc
Q 040524 45 DPVSLYEGTVWHDRRRPVRHSFKYPVRYALFDLDHAPQAP------------------PDHLSAG------------EAR 94 (238)
Q Consensus 45 ~~~~ly~g~V~H~R~~P~~H~F~Y~~~~~~lDLDel~~~~------------------~Dhl~~~------------~~~ 94 (238)
-.|+||.|+|+|+|+.|++|+++|++||+++||||+++++ +||++.. .+.
T Consensus 5 l~saLy~g~V~H~R~~P~~H~l~Yrif~lllDLDe~~~L~~~lr~fs~~~wnl~~Fh~~Dhgd~~~~slr~~ld~~~~a~ 84 (261)
T COG3496 5 LTSALYAGHVRHRRFKPVRHSLAYRIFSLLLDLDELPQLSWRLRLFSRRRWNLFGFHRRDHGDGPGSSLRDRLDAFLAAA 84 (261)
T ss_pred chhhhccceeeeeecccchheeccchhheeecchhHhhhHHHHhhhhhhhhhhhccchhhcCCCCcchHHHHHHHHHHhc
Confidence 3689999999999999999999999999999999999874 4786421 246
Q ss_pred ccccCCCcEEEEecCCccceeeCccEEEEEEeCCCCccceeEEEEEeeCCCCCceEEEEecCCCC-------ccCcceee
Q 040524 95 RVAETNGPVLLLTIPPSVGYEQNPLSLYYCYDVEGSTQCLKKCIAEVTNTPWGERVTFVFNPKSD-------LVAKPLHV 167 (238)
Q Consensus 95 ~i~~~~g~I~LLT~pR~lGy~FNPVSfYyc~d~~~~~~~L~avlaEV~NTPfgERH~Yvl~~~~~-------~~~K~FHV 167 (238)
|+..++|+|.+|+|||+|||+|||||+|||||.|| +|+++|+||+|| |||||.|+++++.. +++|+|||
T Consensus 85 Glav~~g~Ir~L~mpR~LG~~FnPlsiffchdr~~---~l~ail~eV~NT-fgqRH~YliP~~~~~d~~v~q~~~KaFyV 160 (261)
T COG3496 85 GLAVDGGRIRALLMPRVLGYAFNPLSIFFCHDRDG---RLRAILAEVHNT-FGQRHSYLIPAQAGADLPVVQQCAKAFYV 160 (261)
T ss_pred CccccCCceEEeeehhhheeecCcceEEEEECCCc---cHHHHHHHHhcc-cccceeeecCcccCccchheeccccceee
Confidence 77889999999999999999999999999999999 599999999999 99999999997432 58999999
Q ss_pred CCCCCCCceEEEEEeCCCCeeEEEEEEecCCCCcEEEEEeeeecccCChhhhHH--HHhhhhHHhhheeeeeC
Q 040524 168 SPFMDMHGNWSIRANAPGENLLVEISVQHPELGDYFVATLKAKRVSSQLMSDQD--MFFWLMPHKVAFWIYWH 238 (238)
Q Consensus 168 SPF~~m~g~Y~f~~~~p~~~l~i~I~~~~~~~~~~f~Atl~g~r~plt~~~~l~--~~~p~~tlkvi~~IyWQ 238 (238)
||||+|+++|.|++..|++.++|+|++.++ +++.|+||+.|+|+|||+++++. +..|++|+||+++||||
T Consensus 161 SPF~~m~lrY~fri~pp~~~l~I~v~~~dd-~g~~~~At~agqrr~ltd~~ll~a~i~~P~~~~kV~~gIhwe 232 (261)
T COG3496 161 SPFMPMALRYLFRIPPPGRALDIHVTLHDD-RGPEFTATLAGQRRPLTDGALLKALIISPLLTLKVVAGIHWE 232 (261)
T ss_pred cCcccccceEEEecCCCCceeEEEEEEecC-CCceeeeeeccccccCchHHHHHHHHcCchHhhhhhhhhhHH
Confidence 999999999999999999999999999865 56899999999999999999443 34999999999999997
No 3
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=37.10 E-value=1.6e+02 Score=24.09 Aligned_cols=57 Identities=25% Similarity=0.476 Sum_probs=36.2
Q ss_pred EEEEEEeCCCCccceeEEEEEeeCC----------CCCceEEEEecCCCCccCcceeeCCCCCCCceEEEEEeCCCCeeE
Q 040524 120 SLYYCYDVEGSTQCLKKCIAEVTNT----------PWGERVTFVFNPKSDLVAKPLHVSPFMDMHGNWSIRANAPGENLL 189 (238)
Q Consensus 120 SfYyc~d~~~~~~~L~avlaEV~NT----------PfgERH~Yvl~~~~~~~~K~FHVSPF~~m~g~Y~f~~~~p~~~l~ 189 (238)
=.|-+.|.+|+ +-||++- | ||.+.|.-... .+ +|.=.|.|.|.+. ...++.+.
T Consensus 50 R~W~I~d~~g~-------~~~V~G~GVVG~qP~L~P-Ge~F~Y~S~~~---l~-----tp~G~M~G~y~~~-~~~G~~F~ 112 (127)
T PRK05461 50 RHWLITDANGR-------VQEVRGEGVVGEQPVLAP-GESFEYTSGAV---LE-----TPSGTMQGHYQMV-DEDGERFE 112 (127)
T ss_pred eeEEEEECCCC-------EEEEECCceecCCceECC-CCCeEEeCCCC---cc-----CCCEEEEEEEEEE-eCCCCEEE
Confidence 36788888874 3355543 3 66666642211 11 5888899999996 46677777
Q ss_pred EEEE
Q 040524 190 VEIS 193 (238)
Q Consensus 190 i~I~ 193 (238)
+.|.
T Consensus 113 v~Ip 116 (127)
T PRK05461 113 VPIP 116 (127)
T ss_pred EEcc
Confidence 7765
No 4
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=29.01 E-value=42 Score=24.93 Aligned_cols=22 Identities=27% Similarity=0.691 Sum_probs=17.5
Q ss_pred EEEEeeCCCCCceEEEEecCCC
Q 040524 137 CIAEVTNTPWGERVTFVFNPKS 158 (238)
Q Consensus 137 vlaEV~NTPfgERH~Yvl~~~~ 158 (238)
++.|..++|||.|.+|+.++++
T Consensus 96 ~~~~~~~~~~g~~~~~~~DPdG 117 (125)
T cd07264 96 LVSEPKEKPWGQTVAYVRDING 117 (125)
T ss_pred eccCCccCCCCcEEEEEECCCC
Confidence 5667888999998888877665
No 5
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=26.03 E-value=61 Score=24.28 Aligned_cols=23 Identities=26% Similarity=0.813 Sum_probs=18.6
Q ss_pred EEEEeeCCCCCceEEEEecCCCC
Q 040524 137 CIAEVTNTPWGERVTFVFNPKSD 159 (238)
Q Consensus 137 vlaEV~NTPfgERH~Yvl~~~~~ 159 (238)
++-|....|||.|..|+.++++.
T Consensus 90 ~~~~~~~~~~g~r~~~~~DPdGn 112 (120)
T cd09011 90 YVHPIKEHPWGQRVVRFYDPDKH 112 (120)
T ss_pred EecCcccCCCccEEEEEECCCCC
Confidence 45677889999999999888763
No 6
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=25.55 E-value=72 Score=22.95 Aligned_cols=23 Identities=26% Similarity=0.813 Sum_probs=18.8
Q ss_pred EEEEEeeCCCCCceEEEEecCCC
Q 040524 136 KCIAEVTNTPWGERVTFVFNPKS 158 (238)
Q Consensus 136 avlaEV~NTPfgERH~Yvl~~~~ 158 (238)
.++.|..++|||.+..|+.++++
T Consensus 80 ~~~~~~~~~~~g~~~~~~~DPdG 102 (108)
T PF12681_consen 80 EIVTEPRDDPWGQRSFYFIDPDG 102 (108)
T ss_dssp EEEEEEEEETTSEEEEEEE-TTS
T ss_pred eEeeCCEEcCCCeEEEEEECCCC
Confidence 45778999999999999988775
No 7
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=23.50 E-value=44 Score=25.93 Aligned_cols=52 Identities=25% Similarity=0.304 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhHhHHhhhcccCCCCCCCCCCCCCeeEEEEEEEeecCCCCCCcccccc
Q 040524 9 SILSTAFTSLALSLLLPFRTLLRRRCPPRASSSYSSDPVSLYEGTVWHDRRRPVRHSFKYPV 70 (238)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~g~V~H~R~~P~~H~F~Y~~ 70 (238)
|+||+-|+.+|--+.++|--++---..+.+ .. +..-.|.|..|-.|.|.-+.
T Consensus 37 sIVI~FWv~LA~FV~~lF~iL~~ms~sgsp---------q~-~~~~k~~~~~p~~~~~~lpL 88 (90)
T PF15183_consen 37 SIVIAFWVSLAAFVVFLFLILLYMSWSGSP---------QM-RNSEKHHPMCPWSHSLGLPL 88 (90)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHhccCCC---------Cc-CCccccCCCCCcccccCCCc
Confidence 677766666665544444333200011111 00 23345777777777776543
No 8
>PHA03283 envelope glycoprotein E; Provisional
Probab=22.58 E-value=5.7e+02 Score=26.06 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=35.4
Q ss_pred cCcceeeCCCCCCCceEEEEEeCCCCeeEEEEEEecCCCCcEEEEEeeeecccCChh
Q 040524 161 VAKPLHVSPFMDMHGNWSIRANAPGENLLVEISVQHPELGDYFVATLKAKRVSSQLM 217 (238)
Q Consensus 161 ~~K~FHVSPF~~m~g~Y~f~~~~p~~~l~i~I~~~~~~~~~~f~Atl~g~r~plt~~ 217 (238)
+.-.|||.+ |+=.+=.|||.+.+.|.+......+-|++++.--..|.+..
T Consensus 190 h~a~f~v~n-------YhS~vf~~GDtf~lsi~l~s~~~d~~fs~~i~Wyy~p~~~~ 239 (542)
T PHA03283 190 HHTDFHVRG-------YHSRVYSPGDSFDLSVHLESDIGDPSFSATIDWYYMNTSSS 239 (542)
T ss_pred CCceEEEec-------ceeEEecCCCceeEeEEEeeccCCCCceEEEEEEEecCCCC
Confidence 455899986 44455588999999888764433456999988777776543
No 9
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=21.78 E-value=65 Score=24.92 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=19.7
Q ss_pred EEEEEeeCCCCCceEEEEecCCC
Q 040524 136 KCIAEVTNTPWGERVTFVFNPKS 158 (238)
Q Consensus 136 avlaEV~NTPfgERH~Yvl~~~~ 158 (238)
.++.|..++|||.|..++.++.+
T Consensus 100 ~~~~~~~~~~~g~~~~~v~Dp~G 122 (128)
T cd06588 100 TVLMPLQKTFWSPLFGWVTDRFG 122 (128)
T ss_pred eEeccchhcCcccccEEEECCCC
Confidence 57789999999999999987654
No 10
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=20.81 E-value=1.1e+02 Score=20.63 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=12.1
Q ss_pred CCceEEEEEeCCCCeeEE
Q 040524 173 MHGNWSIRANAPGENLLV 190 (238)
Q Consensus 173 m~g~Y~f~~~~p~~~l~i 190 (238)
-+|+|+|++...+.++-.
T Consensus 2 ~~g~~~f~L~a~ng~via 19 (49)
T PF07411_consen 2 SDGQFRFRLKAGNGEVIA 19 (49)
T ss_dssp TTSEEEEEEE-TTS-EEE
T ss_pred CCCCEEEEEEcCCCCEEE
Confidence 579999999887665433
No 11
>COG3422 Uncharacterized conserved protein [Function unknown]
Probab=20.46 E-value=1.2e+02 Score=21.85 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=13.8
Q ss_pred CCCCceEEEEEeCCCCee
Q 040524 171 MDMHGNWSIRANAPGENL 188 (238)
Q Consensus 171 ~~m~g~Y~f~~~~p~~~l 188 (238)
-|-+|+|+|+|......+
T Consensus 9 kdk~Ge~rfrlkA~N~ei 26 (59)
T COG3422 9 KDKAGEYRFRLKAANGEI 26 (59)
T ss_pred EcCCCcEEEEEEccCccE
Confidence 467899999999865544
No 12
>KOG4321 consensus Predicted phosphate acyltransferases [Lipid transport and metabolism]
Probab=20.17 E-value=60 Score=28.68 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=27.5
Q ss_pred CccEEEEEEeCCCCccceeEEEEEeeCCCCCceEEEEecCCCCccCcceeeCCC
Q 040524 117 NPLSLYYCYDVEGSTQCLKKCIAEVTNTPWGERVTFVFNPKSDLVAKPLHVSPF 170 (238)
Q Consensus 117 NPVSfYyc~d~~~~~~~L~avlaEV~NTPfgERH~Yvl~~~~~~~~K~FHVSPF 170 (238)
-|+..||.-..-= + +-+..|+ | -|+|..+-++ +=.....+|||||=
T Consensus 55 ipidmyylnsrml-l-qrerliy----t-igdrflfklp-gwgtiseafhvspg 100 (279)
T KOG4321|consen 55 IPIDMYYLNSRML-L-QRERLIY----T-IGDRFLFKLP-GWGTISEAFHVSPG 100 (279)
T ss_pred cceeeeeechHHH-H-hhhhheE----e-ecceeEEeCC-CccchhhhhccCCc
Confidence 4899999865420 0 0112232 5 6888776554 11357789999993
Done!