Query 040524
Match_columns 238
No_of_seqs 108 out of 538
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 14:50:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oms_A PHNB protein; structura 51.9 29 0.00098 26.8 5.7 45 114-158 77-129 (138)
2 1tsj_A Conserved hypothetical 43.7 12 0.00042 28.8 2.3 42 116-158 72-120 (139)
3 1u7i_A Hypothetical protein; s 39.9 26 0.0009 26.1 3.7 42 117-158 78-126 (136)
4 3g12_A Putative lactoylglutath 37.9 27 0.00093 25.6 3.4 22 137-159 92-113 (128)
5 1u6l_A Hypothetical protein; s 35.8 19 0.00066 27.5 2.3 23 136-158 106-128 (149)
6 3l20_A Putative uncharacterize 28.0 44 0.0015 27.1 3.4 23 136-158 135-157 (172)
7 2aen_A Hemagglutinin, outer ca 25.6 1.2E+02 0.004 25.0 5.4 54 116-179 15-80 (164)
8 3qdr_B Colicin-A; COLA, TOLA, 24.6 11 0.00039 25.9 -0.7 10 140-149 6-15 (63)
9 1njh_A Protein YOJF; structura 21.0 70 0.0024 25.0 3.1 19 125-147 100-118 (119)
10 4drr_A Outer capsid protein VP 17.6 91 0.0031 25.7 3.2 35 116-157 13-50 (163)
No 1
>3oms_A PHNB protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, methyltransferase, GL family; 1.90A {Bacillus cereus} SCOP: d.32.1.0
Probab=51.86 E-value=29 Score=26.80 Aligned_cols=45 Identities=11% Similarity=0.264 Sum_probs=30.8
Q ss_pred eee-CccEEEEEEeC----CCCccce---eEEEEEeeCCCCCceEEEEecCCC
Q 040524 114 YEQ-NPLSLYYCYDV----EGSTQCL---KKCIAEVTNTPWGERVTFVFNPKS 158 (238)
Q Consensus 114 y~F-NPVSfYyc~d~----~~~~~~L---~avlaEV~NTPfgERH~Yvl~~~~ 158 (238)
+.+ |++|+|+-.++ |.--++| -.++.|...||||+|..++.++.+
T Consensus 77 ~~~~~~~~l~l~~~d~~evd~~~~~l~~Gg~v~~p~~~~~wg~~~~~~~Dp~G 129 (138)
T 3oms_A 77 FTFTPAMSLYVTCETEEEIDTVFHKLAQDGAILMPLGSYPFSKKFGWLNDKYG 129 (138)
T ss_dssp CCCCTTSCEEEEESSHHHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEECTTS
T ss_pred CCCCCCEEEEEEcCCHHHHHHHHHHHHcCCeEecCcccccCCcEEEEEECCCC
Confidence 344 47899888765 1000011 258999999999999999987654
No 2
>1tsj_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, nysgxrc; 2.60A {Staphylococcus aureus subsp} SCOP: d.32.1.7
Probab=43.69 E-value=12 Score=28.85 Aligned_cols=42 Identities=17% Similarity=0.085 Sum_probs=28.3
Q ss_pred eCccEEEEEEeCCCCc----cce---eEEEEEeeCCCCCceEEEEecCCC
Q 040524 116 QNPLSLYYCYDVEGST----QCL---KKCIAEVTNTPWGERVTFVFNPKS 158 (238)
Q Consensus 116 FNPVSfYyc~d~~~~~----~~L---~avlaEV~NTPfgERH~Yvl~~~~ 158 (238)
++ +|+++-.++.... ++| ..++.|..+||||+|..|+-++.+
T Consensus 72 ~~-~sl~~~~~d~~evd~~~~~l~~G~~v~~p~~~~~wG~~~g~v~Dp~G 120 (139)
T 1tsj_A 72 LP-ISLFVTVKDTIEMERLFNGLKDEGAILMPKTNMPPYREFAWVQDKFG 120 (139)
T ss_dssp -C-CCEEEECSSHHHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEECTTS
T ss_pred ce-EEEEEECCCHHHHHHHHHHHhCCCEEeecccccCCCceEEEEECCCC
Confidence 45 7888776531000 011 268999999999999999988755
No 3
>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT structure initiative; HET: MSE; 1.40A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=39.92 E-value=26 Score=26.08 Aligned_cols=42 Identities=12% Similarity=0.248 Sum_probs=28.3
Q ss_pred CccEEEEEEeC----CCCccce---eEEEEEeeCCCCCceEEEEecCCC
Q 040524 117 NPLSLYYCYDV----EGSTQCL---KKCIAEVTNTPWGERVTFVFNPKS 158 (238)
Q Consensus 117 NPVSfYyc~d~----~~~~~~L---~avlaEV~NTPfgERH~Yvl~~~~ 158 (238)
+.+++|+-.++ |..-+++ ..++.|...+|||+|..++.++.+
T Consensus 78 ~~~~l~~~v~d~~evd~~~~~l~~Gg~v~~p~~~~~~G~~~~~~~Dp~G 126 (136)
T 1u7i_A 78 PAFSFFVDCESNAQIERLAEALSDGGKALMPLGDYGFSQRFAWLADRFG 126 (136)
T ss_dssp TTEEEEEECCCHHHHHHHHHHHHTTSEEEEEEECCSSSSEEEEEECTTS
T ss_pred CceEEEEEcCCHHHHHHHHHHHHcCCEEecccccCCCcceEEEEECCCC
Confidence 34578777654 1000011 268899999999999999987655
No 4
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=37.90 E-value=27 Score=25.59 Aligned_cols=22 Identities=32% Similarity=0.762 Sum_probs=13.1
Q ss_pred EEEEeeCCCCCceEEEEecCCCC
Q 040524 137 CIAEVTNTPWGERVTFVFNPKSD 159 (238)
Q Consensus 137 vlaEV~NTPfgERH~Yvl~~~~~ 159 (238)
++.|...+|||.| .|+.++++.
T Consensus 92 ~~~~p~~~~~G~~-~~~~DPdGn 113 (128)
T 3g12_A 92 CILDPTDMPDGKK-AIVLDPDGH 113 (128)
T ss_dssp EEEEEEECC-CEE-EEEECTTCC
T ss_pred eccCceeCCCccE-EEEECCCCC
Confidence 4456666667766 676666654
No 5
>1u6l_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.81A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=35.76 E-value=19 Score=27.49 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=20.3
Q ss_pred EEEEEeeCCCCCceEEEEecCCC
Q 040524 136 KCIAEVTNTPWGERVTFVFNPKS 158 (238)
Q Consensus 136 avlaEV~NTPfgERH~Yvl~~~~ 158 (238)
.++.|...||||+|..++.++.+
T Consensus 106 ~i~~p~~~~~wG~r~~~v~Dp~G 128 (149)
T 1u6l_A 106 SVQMPLGPTFWAASFGMFTDRFG 128 (149)
T ss_dssp EEEEEEEEETTEEEEEEEECTTS
T ss_pred EEeecccccCcccceEEEECCCC
Confidence 67899999999999999988765
No 6
>3l20_A Putative uncharacterized protein; hypothetical protein, unknown function; 2.45A {Staphylococcus aureus}
Probab=27.96 E-value=44 Score=27.08 Aligned_cols=23 Identities=9% Similarity=0.232 Sum_probs=20.5
Q ss_pred EEEEEeeCCCCCceEEEEecCCC
Q 040524 136 KCIAEVTNTPWGERVTFVFNPKS 158 (238)
Q Consensus 136 avlaEV~NTPfgERH~Yvl~~~~ 158 (238)
.|+.|..+||||+|..++.++.+
T Consensus 135 ~v~~p~~~~~wG~r~g~v~DpfG 157 (172)
T 3l20_A 135 EIELPFADQFWGGKMGVFTDKYG 157 (172)
T ss_dssp EEEEEEEECTTSSEEEEEECTTS
T ss_pred eEecCccccCCCcEEEEEECCCC
Confidence 78999999999999999987665
No 7
>2aen_A Hemagglutinin, outer capsid protein VP4, VP8* core; neutralization antigen, spike protein; 1.60A {Human rotavirus A} PDB: 2dwr_A
Probab=25.55 E-value=1.2e+02 Score=25.02 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=35.4
Q ss_pred eC-ccEEEEEEeCCCCccceeEEEEEeeCCCCCceE--EEEecCCCC---------ccCcceeeCCCCCCCceEEE
Q 040524 116 QN-PLSLYYCYDVEGSTQCLKKCIAEVTNTPWGERV--TFVFNPKSD---------LVAKPLHVSPFMDMHGNWSI 179 (238)
Q Consensus 116 FN-PVSfYyc~d~~~~~~~L~avlaEV~NTPfgERH--~Yvl~~~~~---------~~~K~FHVSPF~~m~g~Y~f 179 (238)
|| |+..|.+..+.. ..||+|.+|+ .+|- +.++.+... ...|.+-|+ |.-+ .|+|
T Consensus 15 f~pp~~YW~Ll~P~~-----~GVV~E~Tnn--~d~W~A~iliePnv~~~~R~YtlfG~~~qi~V~--Nts~-kWKF 80 (164)
T 2aen_A 15 FKPPNDYWLLISSNT-----NGVVYESTNN--NDFWTAVIAVEPHVSQTNRQYILFGENKQFNVE--NNSD-KWKF 80 (164)
T ss_dssp ECCCTTEEEEEECCS-----SEEEEEEECS--SSCEEEEEEECSSEEEEEEEEEETTEEEEEEEE--ECSS-SEEE
T ss_pred cCCCCceEEEECCCC-----CCEEEEeecC--CCeEEEEEEeCCCCCcceEEEEEeeeEEEEEEe--cCCC-cEEE
Confidence 65 477888888876 3899999888 5554 445544321 145677776 5555 6666
No 8
>3qdr_B Colicin-A; COLA, TOLA, complex, translocation, COLA binds to TOLA, METH protein transport-toxin complex; HET: MLY; 2.65A {Citrobacter freundii}
Probab=24.63 E-value=11 Score=25.94 Aligned_cols=10 Identities=50% Similarity=1.122 Sum_probs=6.9
Q ss_pred EeeCCCCCce
Q 040524 140 EVTNTPWGER 149 (238)
Q Consensus 140 EV~NTPfgER 149 (238)
|--||||||-
T Consensus 6 dSy~TPWG~V 15 (63)
T 3qdr_B 6 DSYNTPWGKV 15 (63)
T ss_dssp -CEEETTEEE
T ss_pred ccccCCCceE
Confidence 3458999984
No 9
>1njh_A Protein YOJF; structural genomics, PSI, protein structure initiative center for structural genomics, MCSG, unknown function; 1.70A {Bacillus subtilis} SCOP: b.128.1.1
Probab=20.98 E-value=70 Score=25.02 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=15.2
Q ss_pred EeCCCCccceeEEEEEeeCCCCC
Q 040524 125 YDVEGSTQCLKKCIAEVTNTPWG 147 (238)
Q Consensus 125 ~d~~~~~~~L~avlaEV~NTPfg 147 (238)
+|.+|+ | +|-.|++-|||.
T Consensus 100 hd~~Gk---L-avaLeiS~~PF~ 118 (119)
T 1njh_A 100 HLPGGK---L-AISLQISEKPFT 118 (119)
T ss_dssp EETTTT---E-EEEEEEESSCCC
T ss_pred cCCCCc---E-EEEEEecCCCCC
Confidence 566774 5 889999999984
No 10
>4drr_A Outer capsid protein VP4; viral protein, cell attachment factor, histo blood antigen, galectin-fold; 1.50A {Rotavirus SP} PDB: 4drv_A* 4ds0_A*
Probab=17.64 E-value=91 Score=25.67 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=24.9
Q ss_pred eC-ccEEEEEEeCCCCccceeEEEEEeeCCCCCceE--EEEecCC
Q 040524 116 QN-PLSLYYCYDVEGSTQCLKKCIAEVTNTPWGERV--TFVFNPK 157 (238)
Q Consensus 116 FN-PVSfYyc~d~~~~~~~L~avlaEV~NTPfgERH--~Yvl~~~ 157 (238)
|| |+..|.+..++. ..||+|.+|+ .+|- +.++.+.
T Consensus 13 f~pp~~YW~Ll~P~~-----~GVV~E~Tnn--~d~W~A~iliePn 50 (163)
T 4drr_A 13 FNLPIDYWMLIAPTQ-----IGRVAEGTNT--TDRWFACVLVEPN 50 (163)
T ss_dssp ECCCTTEEEEECCSS-----SEEEEEEECS--SSCEEEEEEECSS
T ss_pred cCCCCceEEEEccCC-----CCEEEEeecC--cceEEEEEEECCC
Confidence 65 577888888876 4899999888 5554 5555543
Done!