Query 040524
Match_columns 238
No_of_seqs 108 out of 538
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 14:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040524.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040524hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pjsa1 d.32.1.2 (A:3-113) Unc 45.5 4.7 0.00034 26.6 2.0 24 136-159 83-106 (111)
2 d2i7ra1 d.32.1.2 (A:1-115) Hyp 39.0 8.2 0.0006 26.3 2.5 24 136-159 84-107 (115)
3 d1u6la_ d.32.1.7 (A:) Hypothet 36.5 8.8 0.00064 27.1 2.3 23 136-158 105-127 (137)
4 d1u7ia_ d.32.1.7 (A:) Hypothet 31.9 18 0.0013 25.7 3.5 22 136-157 103-124 (134)
5 d1ecsa_ d.32.1.2 (A:) Bleomyci 31.3 19 0.0014 24.1 3.4 25 135-159 87-111 (120)
6 d1klla_ d.32.1.2 (A:) Mitomyci 27.4 22 0.0016 24.0 3.2 24 136-159 96-119 (128)
7 d1grwa_ b.1.11.2 (A:) Major sp 26.8 94 0.0069 21.8 6.9 66 114-195 7-73 (124)
8 d3bida1 d.348.1.1 (A:1-56) Unc 24.0 19 0.0014 22.7 2.0 18 170-187 6-23 (56)
9 d1wspa1 d.15.1.8 (A:750-832) A 20.5 38 0.0027 23.1 3.2 26 172-197 36-64 (83)
10 d1njha_ b.128.1.1 (A:) Hypothe 19.1 39 0.0028 24.6 3.1 19 125-147 99-117 (118)
No 1
>d2pjsa1 d.32.1.2 (A:3-113) Uncharacterized protein Atu1953 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=45.52 E-value=4.7 Score=26.62 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=19.7
Q ss_pred EEEEEeeCCCCCceEEEEecCCCC
Q 040524 136 KCIAEVTNTPWGERVTFVFNPKSD 159 (238)
Q Consensus 136 avlaEV~NTPfgERH~Yvl~~~~~ 159 (238)
.++.|..++|||.|++|+-++++.
T Consensus 83 ~~~~~p~~~~~g~~~~~~~DP~Gn 106 (111)
T d2pjsa1 83 PIEYGPVTEAWGVQRLFLRDPFGK 106 (111)
T ss_dssp CCSEEEEECTTSCEEEEEECTTSC
T ss_pred ccccCCeEcCCCcEEEEEECCCCC
Confidence 356788899999999999887763
No 2
>d2i7ra1 d.32.1.2 (A:1-115) Hypotheical protein SP0731 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=38.99 E-value=8.2 Score=26.34 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.5
Q ss_pred EEEEEeeCCCCCceEEEEecCCCC
Q 040524 136 KCIAEVTNTPWGERVTFVFNPKSD 159 (238)
Q Consensus 136 avlaEV~NTPfgERH~Yvl~~~~~ 159 (238)
.++.|..++|||.|..|+.++++.
T Consensus 84 ~i~~~~~~~~~g~~~~~~~DPdGn 107 (115)
T d2i7ra1 84 KVLHGPTVTDWGTESLLVQGPAGL 107 (115)
T ss_dssp CEEEEEEECTTSCEEEEEECGGGC
T ss_pred ccccceEEeeCCeEEEEEECCCCC
Confidence 468899999999999999887653
No 3
>d1u6la_ d.32.1.7 (A:) Hypothetical protein PA1353 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=36.48 E-value=8.8 Score=27.09 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=20.3
Q ss_pred EEEEEeeCCCCCceEEEEecCCC
Q 040524 136 KCIAEVTNTPWGERVTFVFNPKS 158 (238)
Q Consensus 136 avlaEV~NTPfgERH~Yvl~~~~ 158 (238)
.++.|..++|||+|..+|-++.+
T Consensus 105 ~v~~p~~~~~wG~~~g~v~Dp~G 127 (137)
T d1u6la_ 105 SVQMPLGPTFWAASFGMFTDRFG 127 (137)
T ss_dssp EEEEEEEEETTEEEEEEEECTTS
T ss_pred eeecCccccCCCcEEEEEECCCC
Confidence 68999999999999999987654
No 4
>d1u7ia_ d.32.1.7 (A:) Hypothetical protein PA1358 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=31.87 E-value=18 Score=25.72 Aligned_cols=22 Identities=9% Similarity=0.258 Sum_probs=19.3
Q ss_pred EEEEEeeCCCCCceEEEEecCC
Q 040524 136 KCIAEVTNTPWGERVTFVFNPK 157 (238)
Q Consensus 136 avlaEV~NTPfgERH~Yvl~~~ 157 (238)
.++.|..+||||+|...|.++-
T Consensus 103 ~v~~p~~~~~~g~~~g~v~D~f 124 (134)
T d1u7ia_ 103 KALMPLGDYGFSQRFAWLADRF 124 (134)
T ss_dssp EEEEEEECCSSSSEEEEEECTT
T ss_pred EEecCcccccccceEEEEECCC
Confidence 6799999999999999997653
No 5
>d1ecsa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Klebsiella pneumoniae [TaxId: 573]}
Probab=31.26 E-value=19 Score=24.10 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=20.7
Q ss_pred eEEEEEeeCCCCCceEEEEecCCCC
Q 040524 135 KKCIAEVTNTPWGERVTFVFNPKSD 159 (238)
Q Consensus 135 ~avlaEV~NTPfgERH~Yvl~~~~~ 159 (238)
...+.|..+.|||.|..|+-++++.
T Consensus 87 ~~~~~~~~~~~~G~r~~~~~DPDGn 111 (120)
T d1ecsa_ 87 YPRIHAPELQGWGGTMAALVDPDGT 111 (120)
T ss_dssp SSEEEEEEECTTSSEEEEEECTTSC
T ss_pred ccccccceecCCCcEEEEEECCCCC
Confidence 3457899999999999999888764
No 6
>d1klla_ d.32.1.2 (A:) Mitomycin resistance protein D, MRD {Streptomyces lavendulae [TaxId: 1914]}
Probab=27.44 E-value=22 Score=24.02 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=20.7
Q ss_pred EEEEEeeCCCCCceEEEEecCCCC
Q 040524 136 KCIAEVTNTPWGERVTFVFNPKSD 159 (238)
Q Consensus 136 avlaEV~NTPfgERH~Yvl~~~~~ 159 (238)
.++-|..+.|||.|..|+.++++.
T Consensus 96 ~~~~~p~~~~~G~~~~~~~DPdG~ 119 (128)
T d1klla_ 96 EGHLKPWNAVWGQRYAIVKDPDGN 119 (128)
T ss_dssp EEEEEEEECTTSEEEEEEECTTSC
T ss_pred ccccCCeEcCCCcEEEEEECCCCC
Confidence 578899999999999999888763
No 7
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=26.77 E-value=94 Score=21.84 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=46.8
Q ss_pred eeeCccE-EEEEEeCCCCccceeEEEEEeeCCCCCceEEEEecCCCCccCcceeeCCCCCCCceEEEEEeCCCCeeEEEE
Q 040524 114 YEQNPLS-LYYCYDVEGSTQCLKKCIAEVTNTPWGERVTFVFNPKSDLVAKPLHVSPFMDMHGNWSIRANAPGENLLVEI 192 (238)
Q Consensus 114 y~FNPVS-fYyc~d~~~~~~~L~avlaEV~NTPfgERH~Yvl~~~~~~~~K~FHVSPF~~m~g~Y~f~~~~p~~~l~i~I 192 (238)
..++|-+ +.|-..-+ +......++.|+ -+++-+|=+... .++.|.|.|- .| +-.|++...|.|
T Consensus 7 l~i~P~~~L~F~~p~~----~~~~~~l~l~N~-s~~~vafKvktt---~p~~y~v~P~---~G-----~i~p~~~~~i~V 70 (124)
T d1grwa_ 7 IQTQPGTKIVFNAPYD----DKHTYHIKVINS-SARRIGYGIKTT---NMKRLGVDPP---CG-----VLDPKEAVLLAV 70 (124)
T ss_dssp EEEESSSCEEEESCCS----SCEEEEEEEEEC-SSSCEEEEEEES---CTTTEEEESS---EE-----EECTTCEEEEEE
T ss_pred eEECCCCeEEEecCCC----cEEEEEEEEECC-CCCeEEEEEEeC---CCceEEEECC---CC-----EECCCCEEEEEE
Confidence 5577755 44544322 244567799999 899988987643 6789999993 23 578999999999
Q ss_pred EEe
Q 040524 193 SVQ 195 (238)
Q Consensus 193 ~~~ 195 (238)
.+.
T Consensus 71 ~~~ 73 (124)
T d1grwa_ 71 SCD 73 (124)
T ss_dssp EEC
T ss_pred EEe
Confidence 875
No 8
>d3bida1 d.348.1.1 (A:1-56) Uncharacterized protein NMB1088 {Neisseria meningitidis [TaxId: 487]}
Probab=23.97 E-value=19 Score=22.73 Aligned_cols=18 Identities=22% Similarity=0.494 Sum_probs=13.4
Q ss_pred CCCCCceEEEEEeCCCCe
Q 040524 170 FMDMHGNWSIRANAPGEN 187 (238)
Q Consensus 170 F~~m~g~Y~f~~~~p~~~ 187 (238)
|-+.+|+|+|++...+..
T Consensus 6 ~~d~~g~~rfrLka~Ng~ 23 (56)
T d3bida1 6 YKDAKGEYRWRLKAANHE 23 (56)
T ss_dssp EECTTSCEEEEEECTTSC
T ss_pred EECCCCCEEEEEEeCCCC
Confidence 346789999999876544
No 9
>d1wspa1 d.15.1.8 (A:750-832) Axin 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.52 E-value=38 Score=23.06 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=17.8
Q ss_pred CCCceEEEEEeCCCCee---EEEEEEecC
Q 040524 172 DMHGNWSIRANAPGENL---LVEISVQHP 197 (238)
Q Consensus 172 ~m~g~Y~f~~~~p~~~l---~i~I~~~~~ 197 (238)
+..|+|+|+|...++.. .|..+..++
T Consensus 36 ~~~G~y~f~FK~~~~d~~~~~V~~ei~dD 64 (83)
T d1wspa1 36 TKKGSYRYYFKKVSDEFDCGVVFEEVRED 64 (83)
T ss_dssp CSCSCEEEEEEEECTTSTTSEEEEEECCT
T ss_pred CCCCcEEEEEEecCcccCCCeEEEEECCC
Confidence 45699999998765443 577776644
No 10
>d1njha_ b.128.1.1 (A:) Hypothetical protein YojF {Bacillus subtilis [TaxId: 1423]}
Probab=19.05 E-value=39 Score=24.60 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=15.1
Q ss_pred EeCCCCccceeEEEEEeeCCCCC
Q 040524 125 YDVEGSTQCLKKCIAEVTNTPWG 147 (238)
Q Consensus 125 ~d~~~~~~~L~avlaEV~NTPfg 147 (238)
+|.+|+ | ++-.|++.|||.
T Consensus 99 hd~~Gr---L-avaLeiS~~PF~ 117 (118)
T d1njha_ 99 HLPGGK---L-AISLQISEKPFT 117 (118)
T ss_dssp EETTTT---E-EEEEEEESSCCC
T ss_pred cCCCCc---E-EEEEEecCCCcC
Confidence 566774 5 888999999984
Done!