Query 040527
Match_columns 468
No_of_seqs 172 out of 2044
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 09:18:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.7 7.9E-19 1.7E-23 163.6 -2.8 345 24-440 71-435 (483)
2 KOG2120 SCF ubiquitin ligase, 99.6 8.8E-18 1.9E-22 150.1 -1.8 284 24-378 97-392 (419)
3 smart00579 FBD domain in FBox 99.3 4.6E-12 1E-16 93.1 8.2 70 399-468 1-72 (72)
4 PF08387 FBD: FBD; InterPro: 99.1 1.1E-10 2.3E-15 78.8 5.2 50 391-440 2-51 (51)
5 KOG4194 Membrane glycoprotein 99.1 1.7E-11 3.7E-16 119.5 -0.9 213 160-382 173-401 (873)
6 KOG4194 Membrane glycoprotein 98.9 8.2E-11 1.8E-15 114.8 -2.6 218 134-382 102-326 (873)
7 PLN00113 leucine-rich repeat r 98.9 1.3E-09 2.9E-14 121.2 5.5 282 134-440 93-389 (968)
8 PLN00113 leucine-rich repeat r 98.9 1.5E-09 3.2E-14 120.8 5.6 234 134-382 118-365 (968)
9 PF12937 F-box-like: F-box-lik 98.7 8.1E-09 1.7E-13 68.7 3.3 35 25-59 1-35 (47)
10 cd00116 LRR_RI Leucine-rich re 98.6 2.1E-09 4.6E-14 103.8 -4.2 11 260-270 137-147 (319)
11 PLN03210 Resistant to P. syrin 98.5 2.1E-07 4.5E-12 104.6 7.9 103 158-271 609-715 (1153)
12 PLN03210 Resistant to P. syrin 98.5 1.5E-07 3.4E-12 105.6 6.5 110 150-272 624-737 (1153)
13 KOG3207 Beta-tubulin folding c 98.4 1.6E-08 3.4E-13 96.0 -4.7 207 158-382 119-335 (505)
14 PF00646 F-box: F-box domain; 98.3 2.5E-07 5.4E-12 61.8 1.5 37 25-61 3-39 (48)
15 KOG4341 F-box protein containi 98.3 1.4E-08 3.1E-13 95.8 -7.1 209 158-382 135-355 (483)
16 smart00256 FBOX A Receptor for 98.2 1.1E-06 2.4E-11 56.4 3.2 34 28-61 1-34 (41)
17 KOG0444 Cytoskeletal regulator 98.1 1.6E-08 3.4E-13 100.0 -10.2 200 149-382 92-300 (1255)
18 KOG1909 Ran GTPase-activating 98.1 4.1E-07 8.8E-12 84.3 -0.6 141 159-333 29-197 (382)
19 cd00116 LRR_RI Leucine-rich re 98.1 1.5E-07 3.3E-12 90.8 -3.9 113 157-271 78-204 (319)
20 PRK15387 E3 ubiquitin-protein 98.1 7.5E-06 1.6E-10 86.5 7.7 102 149-273 213-315 (788)
21 PRK15387 E3 ubiquitin-protein 98.0 7.5E-06 1.6E-10 86.5 5.0 52 135-195 223-275 (788)
22 KOG2120 SCF ubiquitin ligase, 97.9 8.6E-07 1.9E-11 80.4 -2.3 134 130-270 230-373 (419)
23 KOG0444 Cytoskeletal regulator 97.9 1.5E-07 3.2E-12 93.3 -8.7 218 135-382 33-254 (1255)
24 PRK15370 E3 ubiquitin-protein 97.8 2.7E-05 5.8E-10 82.7 5.7 196 135-382 179-376 (754)
25 KOG1947 Leucine rich repeat pr 97.8 1.4E-07 3.1E-12 96.5 -11.6 42 20-61 40-81 (482)
26 PF14580 LRR_9: Leucine-rich r 97.7 1.5E-05 3.2E-10 68.9 1.9 63 318-382 85-149 (175)
27 PF14580 LRR_9: Leucine-rich r 97.7 3.4E-06 7.3E-11 72.9 -2.3 124 135-268 20-148 (175)
28 KOG2982 Uncharacterized conser 97.7 2E-05 4.4E-10 71.7 2.5 200 161-382 46-258 (418)
29 KOG0618 Serine/threonine phosp 97.7 5.5E-07 1.2E-11 93.2 -8.6 80 160-245 241-321 (1081)
30 KOG0618 Serine/threonine phosp 97.7 1.5E-06 3.2E-11 90.1 -6.0 198 150-359 277-487 (1081)
31 KOG3207 Beta-tubulin folding c 97.5 1.3E-05 2.7E-10 76.7 -1.2 109 159-272 171-283 (505)
32 KOG0472 Leucine-rich repeat pr 97.5 1.9E-06 4.1E-11 81.3 -6.9 68 149-220 195-263 (565)
33 PRK15370 E3 ubiquitin-protein 97.5 5.3E-05 1.1E-09 80.5 2.7 220 134-382 199-424 (754)
34 KOG1909 Ran GTPase-activating 97.4 3.4E-05 7.4E-10 71.8 0.4 168 181-382 90-279 (382)
35 PF13855 LRR_8: Leucine rich r 97.4 8.2E-05 1.8E-09 52.4 1.8 58 160-220 1-60 (61)
36 KOG0617 Ras suppressor protein 97.1 6.9E-06 1.5E-10 68.7 -6.8 104 135-245 34-138 (264)
37 KOG3665 ZYG-1-like serine/thre 97.1 0.00021 4.5E-09 75.3 1.6 61 160-222 122-186 (699)
38 KOG1947 Leucine rich repeat pr 97.1 9.9E-05 2.1E-09 75.5 -0.9 37 181-218 186-223 (482)
39 KOG0617 Ras suppressor protein 97.1 1E-05 2.2E-10 67.8 -6.7 85 155-245 28-113 (264)
40 KOG1259 Nischarin, modulator o 96.9 0.00063 1.4E-08 62.3 2.9 210 180-426 211-450 (490)
41 KOG3665 ZYG-1-like serine/thre 96.9 0.00034 7.3E-09 73.8 1.1 120 310-439 162-283 (699)
42 PF07723 LRR_2: Leucine Rich R 96.9 0.0008 1.7E-08 37.9 2.1 25 184-209 1-26 (26)
43 KOG0472 Leucine-rich repeat pr 96.8 2.1E-06 4.5E-11 81.1 -14.2 114 148-270 79-193 (565)
44 PF12799 LRR_4: Leucine Rich r 96.3 0.0017 3.8E-08 42.0 1.0 36 160-195 1-37 (44)
45 KOG4237 Extracellular matrix p 96.0 0.0013 2.9E-08 62.5 -0.9 90 278-370 271-372 (498)
46 KOG1644 U2-associated snRNP A' 95.8 0.011 2.4E-07 51.3 3.9 87 158-270 62-150 (233)
47 KOG1259 Nischarin, modulator o 95.5 0.0025 5.3E-08 58.5 -1.2 129 180-360 281-411 (490)
48 KOG1644 U2-associated snRNP A' 95.4 0.033 7.2E-07 48.5 5.3 100 160-289 42-148 (233)
49 PF13855 LRR_8: Leucine rich r 95.3 0.016 3.6E-07 40.4 2.8 54 135-191 2-57 (61)
50 COG4886 Leucine-rich repeat (L 95.3 0.0044 9.5E-08 61.7 -0.4 165 160-358 116-287 (394)
51 PLN03150 hypothetical protein; 95.1 0.015 3.3E-07 61.3 3.3 106 161-271 419-526 (623)
52 KOG0281 Beta-TrCP (transducin 95.1 0.011 2.5E-07 54.9 1.9 37 21-57 71-111 (499)
53 KOG2997 F-box protein FBX9 [Ge 94.8 0.018 4E-07 53.1 2.3 36 22-57 104-144 (366)
54 KOG2982 Uncharacterized conser 94.7 0.0047 1E-07 56.7 -1.8 86 182-272 44-133 (418)
55 PF12799 LRR_4: Leucine Rich r 94.6 0.012 2.5E-07 38.1 0.4 36 183-222 1-37 (44)
56 KOG4658 Apoptotic ATPase [Sign 94.4 0.046 1E-06 59.6 4.6 68 149-219 584-652 (889)
57 COG5238 RNA1 Ran GTPase-activa 94.0 0.018 3.8E-07 52.4 0.5 165 204-382 87-281 (388)
58 PLN03150 hypothetical protein; 93.8 0.04 8.7E-07 58.2 2.6 82 185-272 420-502 (623)
59 KOG4658 Apoptotic ATPase [Sign 93.6 0.019 4.1E-07 62.5 -0.1 17 343-359 712-728 (889)
60 KOG2739 Leucine-rich acidic nu 93.6 0.026 5.7E-07 51.0 0.8 84 158-245 41-127 (260)
61 KOG2739 Leucine-rich acidic nu 93.2 0.033 7.2E-07 50.4 0.8 64 315-381 85-151 (260)
62 PRK15386 type III secretion pr 93.0 0.17 3.7E-06 49.7 5.4 90 158-269 50-141 (426)
63 PLN03215 ascorbic acid mannose 92.9 0.071 1.5E-06 51.6 2.6 37 25-61 4-41 (373)
64 KOG1859 Leucine-rich repeat pr 92.7 0.01 2.2E-07 61.0 -3.6 38 135-173 85-122 (1096)
65 COG4886 Leucine-rich repeat (L 91.6 0.031 6.6E-07 55.7 -1.7 169 135-333 117-289 (394)
66 COG5238 RNA1 Ran GTPase-activa 89.9 0.21 4.5E-06 45.7 2.2 237 106-382 34-312 (388)
67 KOG4237 Extracellular matrix p 89.6 0.11 2.4E-06 49.8 0.3 83 158-245 272-357 (498)
68 KOG2123 Uncharacterized conser 89.5 0.031 6.8E-07 51.0 -3.3 14 366-379 110-123 (388)
69 PRK15386 type III secretion pr 89.3 0.52 1.1E-05 46.4 4.6 54 207-270 50-104 (426)
70 KOG3864 Uncharacterized conser 85.7 0.066 1.4E-06 46.7 -3.4 69 151-220 92-162 (221)
71 PF00560 LRR_1: Leucine Rich R 85.6 0.44 9.6E-06 25.4 1.0 18 161-178 1-18 (22)
72 PF13013 F-box-like_2: F-box-l 85.6 0.91 2E-05 35.7 3.1 39 24-62 21-63 (109)
73 KOG0531 Protein phosphatase 1, 85.4 0.1 2.2E-06 52.3 -2.9 105 156-270 91-196 (414)
74 KOG3864 Uncharacterized conser 85.2 0.19 4.1E-06 43.9 -0.9 10 431-440 176-185 (221)
75 KOG0274 Cdc4 and related F-box 83.7 0.51 1.1E-05 48.7 1.3 40 19-58 102-141 (537)
76 KOG0531 Protein phosphatase 1, 80.7 0.6 1.3E-05 46.8 0.5 79 160-245 72-151 (414)
77 PF13504 LRR_7: Leucine rich r 80.2 1.2 2.6E-05 22.1 1.2 15 160-174 1-15 (17)
78 KOG1859 Leucine-rich repeat pr 79.7 0.15 3.2E-06 52.9 -4.1 35 160-195 187-222 (1096)
79 KOG2123 Uncharacterized conser 75.1 0.25 5.5E-06 45.3 -3.6 60 158-220 39-99 (388)
80 KOG0532 Leucine-rich repeat (L 73.7 0.2 4.3E-06 50.5 -5.0 35 322-360 212-246 (722)
81 smart00367 LRR_CC Leucine-rich 63.1 2.1 4.6E-05 23.8 -0.2 13 208-220 1-13 (26)
82 KOG4579 Leucine-rich repeat (L 61.9 1.6 3.4E-05 36.0 -1.2 58 160-221 53-112 (177)
83 KOG3926 F-box proteins [Amino 59.6 3.7 7.9E-05 37.5 0.5 51 22-72 199-256 (332)
84 KOG0532 Leucine-rich repeat (L 59.4 1 2.2E-05 45.7 -3.3 40 151-191 135-174 (722)
85 PF13516 LRR_6: Leucine Rich r 52.8 8.1 0.00018 20.8 1.0 14 160-173 2-15 (24)
86 KOG4579 Leucine-rich repeat (L 41.4 1.9 4.1E-05 35.5 -3.7 67 149-219 65-133 (177)
87 PF09372 PRANC: PRANC domain; 38.3 22 0.00047 27.3 1.8 25 23-47 70-94 (97)
88 smart00370 LRR Leucine-rich re 37.9 22 0.00048 19.4 1.3 18 160-177 2-19 (26)
89 smart00369 LRR_TYP Leucine-ric 37.9 22 0.00048 19.4 1.3 18 160-177 2-19 (26)
90 PF13306 LRR_5: Leucine rich r 35.3 40 0.00087 26.8 3.1 57 157-218 9-67 (129)
91 KOG4408 Putative Mg2+ and Co2+ 24.1 21 0.00046 33.8 -0.5 39 25-63 8-46 (386)
92 smart00368 LRR_RI Leucine rich 24.1 44 0.00095 18.8 1.0 13 161-173 3-15 (28)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.69 E-value=7.9e-19 Score=163.63 Aligned_cols=345 Identities=16% Similarity=0.128 Sum_probs=182.6
Q ss_pred ccCCCChHHHHHHhcCCCchhhhhhhhhhhhHHHH------hccCceeEeecCcccccCCCCCCchhhhcHHHHHHHHHH
Q 040527 24 RISSLPDEILCHILSFLPIKCAVQTCILSSRWKHL------WTSLPCLCFDDSLWFKDKRPGESTQDVLTRFANFVNKVL 97 (468)
Q Consensus 24 ~~s~LPd~vL~~Ils~L~~~~~~r~s~vskrWr~l------w~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 97 (468)
..-.||+|++.+|||+|+++.++|++++|+-|... |..+.-..|..+.-. ..|...+
T Consensus 71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g-----------------~VV~~~~ 133 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG-----------------GVVENMI 133 (483)
T ss_pred ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC-----------------cceehHh
Confidence 33469999999999999999999999999999864 554432222211110 1122222
Q ss_pred hhCCCCceeEEeecCCCCCcCCCCCcHHHHHHHHHhcCceEEEEEEEecceeeecCCCccccCccceEEecccccCCC--
Q 040527 98 LFHSADINKFSVHCSEPNIYLTDLPPLKSWVSSAIERNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKI-- 175 (468)
Q Consensus 98 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-- 175 (468)
.+. | ..+++|.+.++.+..+..+-.....|++++.|.+.+|...+.
T Consensus 134 ~Rc-g-------------------------------g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s 181 (483)
T KOG4341|consen 134 SRC-G-------------------------------GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSS 181 (483)
T ss_pred hhh-c-------------------------------cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHH
Confidence 222 2 223344443333222333333334455555555555542111
Q ss_pred -CCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeee-ccCCCeeeEEEEcCcccEEEEeeeeecccCCc
Q 040527 176 -PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHL-EDKHSVTNLNISSLTLKRLTLSLEKVLFSNTK 252 (468)
Q Consensus 176 -~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~-~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~ 252 (468)
......|++|+.|+|. |...++..+. .+..+||+|+.|+++.|. +.+.+++.+.-.+..|+.+...+|....++.+
T Consensus 182 ~~sla~~C~~l~~l~L~~c~~iT~~~Lk-~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l 260 (483)
T KOG4341|consen 182 LLSLARYCRKLRHLNLHSCSSITDVSLK-YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEAL 260 (483)
T ss_pred HHHHHHhcchhhhhhhcccchhHHHHHH-HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHH
Confidence 0012245555555555 4444444444 555555555555555554 11113333333334444444444442222222
Q ss_pred eeEEEecCCeeEEEEeccccc-eEEE----ecCCCeeEEEEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEE
Q 040527 253 HQVMIRAPNLEHLCIYDDTLV-SYMV----HELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLS 327 (468)
Q Consensus 253 ~~i~~~~p~L~~L~l~~~~~~-~~~~----~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~ 327 (468)
..+.-.++.+..+++..|... +..+ ..+..|+.+.. .++. .+++..+..+.+++.+|+.|.
T Consensus 261 ~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~---------s~~t-----~~~d~~l~aLg~~~~~L~~l~ 326 (483)
T KOG4341|consen 261 LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCY---------SSCT-----DITDEVLWALGQHCHNLQVLE 326 (483)
T ss_pred HHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcc---------cCCC-----CCchHHHHHHhcCCCceEEEe
Confidence 222223333333332222100 0000 00111111111 0111 113667788889999999999
Q ss_pred EecccccccccccccC-CCCCCCcceEEEEEecCCch-hHHHHHhcCCCCceEEEeee--ecCCCCCCCCCCccCccccc
Q 040527 328 LSAGIISALDCAFEDY-IPTFPYLTYLKVEIEESGFR-LLPIILRSLPNLGAMEIDFL--IVGDNLRWTEPQCVPNCLLL 403 (468)
Q Consensus 328 l~~~~~~~~~~l~~~~-~~~~~~L~~L~l~~~~~~~~-~l~~ll~~~p~L~~L~l~~~--~~~~~~~w~~~~~~~~~~~~ 403 (468)
+..+..- ....+.. -..++.|+.|++..+....+ .+..+-.+||.|++|.++++ ++++. ........|-..
T Consensus 327 l~~c~~f--sd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~g---i~~l~~~~c~~~ 401 (483)
T KOG4341|consen 327 LSGCQQF--SDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEG---IRHLSSSSCSLE 401 (483)
T ss_pred ccccchh--hhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhh---hhhhhhcccccc
Confidence 9988640 1111112 24778899999998887664 48899999999999999973 44442 222222346678
Q ss_pred ceeEEEEEeecCchHHHHHHHHHHhcCcccceEEEEe
Q 040527 404 HVKKIEICGFEGLKHELELVKYLLKNSEVLDKMIIRS 440 (468)
Q Consensus 404 ~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~i~~ 440 (468)
+|.++++.+..+... +..+ .+.+++.||++.++-
T Consensus 402 ~l~~lEL~n~p~i~d--~~Le-~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 402 GLEVLELDNCPLITD--ATLE-HLSICRNLERIELID 435 (483)
T ss_pred ccceeeecCCCCchH--HHHH-HHhhCcccceeeeec
Confidence 899999998877643 2233 467889999977765
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=8.8e-18 Score=150.10 Aligned_cols=284 Identities=21% Similarity=0.190 Sum_probs=167.2
Q ss_pred ccCCCChHHHHHHhcCCCchhhhhhhhhhhhHHH------HhccCceeEeecCcccccCCCCCCchhhhcHHHHHHHHHH
Q 040527 24 RISSLPDEILCHILSFLPIKCAVQTCILSSRWKH------LWTSLPCLCFDDSLWFKDKRPGESTQDVLTRFANFVNKVL 97 (468)
Q Consensus 24 ~~s~LPd~vL~~Ils~L~~~~~~r~s~vskrWr~------lw~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 97 (468)
....||||++..||+.|+.+++.+.+.|||||.+ +|.. +++.....- | ....+++
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~----p------------~~l~~l~ 157 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIH----P------------DVLGRLL 157 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccC----h------------hHHHHHH
Confidence 3578999999999999999999999999999986 4765 344444441 1 1112222
Q ss_pred hhCCCCceeEEeecCCCCCcCCCCCcHHHHHHH--HHhcCceEEEEEEEecceeeecCCCccccCccceEEecccccCCC
Q 040527 98 LFHSADINKFSVHCSEPNIYLTDLPPLKSWVSS--AIERNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKI 175 (468)
Q Consensus 98 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~--~~~~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~ 175 (468)
++ .++.|++....++.. +..++ .++..+++++++...- +...+-..+..|..|+.|.|.+..+.+.
T Consensus 158 -~r--gV~v~Rlar~~~~~p--------rlae~~~~frsRlq~lDLS~s~i-t~stl~~iLs~C~kLk~lSlEg~~LdD~ 225 (419)
T KOG2120|consen 158 -SR--GVIVFRLARSFMDQP--------RLAEHFSPFRSRLQHLDLSNSVI-TVSTLHGILSQCSKLKNLSLEGLRLDDP 225 (419)
T ss_pred -hC--CeEEEEcchhhhcCc--------hhhhhhhhhhhhhHHhhcchhhe-eHHHHHHHHHHHHhhhhccccccccCcH
Confidence 11 133455543333322 22222 2334678888874322 1233344556789999999999988763
Q ss_pred -CCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeee-EEEEcCcccEEEEeeeeec-ccCC
Q 040527 176 -PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTN-LNISSLTLKRLTLSLEKVL-FSNT 251 (468)
Q Consensus 176 -~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~-~~i~~~~L~~L~l~~~~~~-~~~~ 251 (468)
-...+.-.+|+.|+|+ +.=.++.++. -++++|..|.+|+|..|......++. +...+++|+.|++++|..+ .++.
T Consensus 226 I~~~iAkN~~L~~lnlsm~sG~t~n~~~-ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh 304 (419)
T KOG2120|consen 226 IVNTIAKNSNLVRLNLSMCSGFTENALQ-LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSH 304 (419)
T ss_pred HHHHHhccccceeeccccccccchhHHH-HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhH
Confidence 1224456789999999 5544445588 88999999999999999632101111 1223567777777777622 1122
Q ss_pred ceeEEEecCCeeEEEEeccccceEEEecCCCeeEEEEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecc
Q 040527 252 KHQVMIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAG 331 (468)
Q Consensus 252 ~~~i~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~ 331 (468)
+..+.-.+|+|..|+++++... ...+...+-.++.+++|.++.+
T Consensus 305 ~~tL~~rcp~l~~LDLSD~v~l------------------------------------~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 305 LSTLVRRCPNLVHLDLSDSVML------------------------------------KNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred HHHHHHhCCceeeecccccccc------------------------------------CchHHHHHHhcchheeeehhhh
Confidence 3333345677777777665220 2245555666777777777766
Q ss_pred cccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceE
Q 040527 332 IISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAM 378 (468)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L 378 (468)
+.-..+. .-.+...|.|..|++..|..+ ..+.-+...||+|+.-
T Consensus 349 Y~i~p~~--~~~l~s~psl~yLdv~g~vsd-t~mel~~e~~~~lkin 392 (419)
T KOG2120|consen 349 YDIIPET--LLELNSKPSLVYLDVFGCVSD-TTMELLKEMLSHLKIN 392 (419)
T ss_pred cCCChHH--eeeeccCcceEEEEeccccCc-hHHHHHHHhCcccccc
Confidence 5400000 113445566777777655332 1233344556666543
No 3
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.34 E-value=4.6e-12 Score=93.08 Aligned_cols=70 Identities=37% Similarity=0.673 Sum_probs=62.4
Q ss_pred cccccceeEEEEEeecCchHHHHHHHHHHhcCcccceEEEEeccc--ccHHHHHHHHhcCcCCCCCceEEeC
Q 040527 399 NCLLLHVKKIEICGFEGLKHELELVKYLLKNSEVLDKMIIRSMKE--ACSKKLFQKLLIFERGSKTCKVEFL 468 (468)
Q Consensus 399 ~~~~~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~i~~~~~--~~~~~~~~~l~~~~~~s~~~~i~~~ 468 (468)
+|+.++|+.|+|.+|.|..+|+++++|+++||+.||+|+|..... +....+.++|..+||||+.|+|.|.
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~c~i~~~ 72 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSSCQVQFL 72 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCceEEEeC
Confidence 477889999999999999999999999999999999999998542 3445678999999999999999884
No 4
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.12 E-value=1.1e-10 Score=78.78 Aligned_cols=50 Identities=54% Similarity=0.951 Sum_probs=47.0
Q ss_pred CCCCCccCcccccceeEEEEEeecCchHHHHHHHHHHhcCcccceEEEEe
Q 040527 391 WTEPQCVPNCLLLHVKKIEICGFEGLKHELELVKYLLKNSEVLDKMIIRS 440 (468)
Q Consensus 391 w~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~i~~ 440 (468)
|++....|+|+.+||+.|++.+|.|..+|++|++|+++||++||+|+|..
T Consensus 2 W~~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~ 51 (51)
T PF08387_consen 2 WIEPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF 51 (51)
T ss_pred CCCCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence 77777789999999999999999999999999999999999999999963
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.06 E-value=1.7e-11 Score=119.46 Aligned_cols=213 Identities=17% Similarity=0.159 Sum_probs=99.6
Q ss_pred CccceEEecccccCCC-CCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEE-cCcc
Q 040527 160 KTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNIS-SLTL 236 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~-~~~L 236 (468)
.++++|+|+++.+... ...+.++.+|.+|.|+ +.++.-. . ..|.+.|+|+.|+|..+.+. -.+-+... .++|
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp--~-r~Fk~L~~L~~LdLnrN~ir--ive~ltFqgL~Sl 247 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP--Q-RSFKRLPKLESLDLNRNRIR--IVEGLTFQGLPSL 247 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccC--H-HHhhhcchhhhhhcccccee--eehhhhhcCchhh
Confidence 6677777777776654 2345566677777777 7666432 2 45667777777777776532 11122222 3556
Q ss_pred cEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceE---EEecCCCeeEEEEeeeeecc----cccCcCCCCCCCCc
Q 040527 237 KRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY---MVHELHSLTEVHFDIEFDKY----FVEDLQEFDPPNIP 309 (468)
Q Consensus 237 ~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~----~~~~~~~l~~~~~~ 309 (468)
+.|.+..+..... .......+.+++.|++..+..... -+.++.+|+.++++...... .-+.+++|..+.+.
T Consensus 248 ~nlklqrN~I~kL--~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 248 QNLKLQRNDISKL--DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hhhhhhhcCcccc--cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence 6666666542210 011223345555555555433221 12333334433333221100 01123333333321
Q ss_pred hhhH----HHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCc--hhHHHHHhcCCCCceEEEee
Q 040527 310 ADRM----LQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGF--RLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 310 ~~~~----~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~--~~l~~ll~~~p~L~~L~l~~ 382 (468)
...+ .+-+..+..|+.|.|+.+.. +.+..+.+..+.+|+.|+|+.+...| +.-...+.+.|.|.+|.+.+
T Consensus 326 ~N~i~~l~~~sf~~L~~Le~LnLs~Nsi---~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g 401 (873)
T KOG4194|consen 326 SNRITRLDEGSFRVLSQLEELNLSHNSI---DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG 401 (873)
T ss_pred ccccccCChhHHHHHHHhhhhcccccch---HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence 1111 12334455555555555555 44433334445555555555443322 22333445555666665555
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.91 E-value=8.2e-11 Score=114.81 Aligned_cols=218 Identities=17% Similarity=0.187 Sum_probs=113.1
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCC-CCCcccCCcccEEEEE-EEecCcccchhhhhccCCcc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVL 211 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~L 211 (468)
.+++++.++ .. ....+|.......+|+.|.|.++.+..+ ......+|.|++|+|+ +.++.-. . .-|..-+++
T Consensus 102 ~nLq~v~l~--~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~--~-~sfp~~~ni 175 (873)
T KOG4194|consen 102 PNLQEVNLN--KN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIP--K-PSFPAKVNI 175 (873)
T ss_pred Ccceeeeec--cc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhccc--C-CCCCCCCCc
Confidence 466666665 11 2455666554556677777777776654 1224456777777777 6665432 1 234555667
Q ss_pred ceEEEeeeeccCCCeeeEEEEc-CcccEEEEeeeeecccCCceeEEE-ecCCeeEEEEeccccc---eEEEecCCCeeEE
Q 040527 212 EDLLIEIHLEDKHSVTNLNISS-LTLKRLTLSLEKVLFSNTKHQVMI-RAPNLEHLCIYDDTLV---SYMVHELHSLTEV 286 (468)
Q Consensus 212 e~L~L~~c~~~~~~~~~~~i~~-~~L~~L~l~~~~~~~~~~~~~i~~-~~p~L~~L~l~~~~~~---~~~~~~~~~L~~~ 286 (468)
++|+|.++.++ .++.-...+ .+|..|.++.+... .+....+ ..|+|+.|++..+... ...+.++++|+.+
T Consensus 176 ~~L~La~N~It--~l~~~~F~~lnsL~tlkLsrNrit---tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 176 KKLNLASNRIT--TLETGHFDSLNSLLTLKLSRNRIT---TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred eEEeecccccc--ccccccccccchheeeecccCccc---ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 77777777655 444433332 25777777776532 1222223 2577777777766442 2245566666655
Q ss_pred EEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHH
Q 040527 287 HFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLP 366 (468)
Q Consensus 287 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~ 366 (468)
.+.-.. ..+|+ .+.+-++.+++.|+|..+.. +.+..+.+..+..|++|+++++...--. .
T Consensus 251 klqrN~-------I~kL~---------DG~Fy~l~kme~l~L~~N~l---~~vn~g~lfgLt~L~~L~lS~NaI~rih-~ 310 (873)
T KOG4194|consen 251 KLQRND-------ISKLD---------DGAFYGLEKMEHLNLETNRL---QAVNEGWLFGLTSLEQLDLSYNAIQRIH-I 310 (873)
T ss_pred hhhhcC-------ccccc---------Ccceeeecccceeecccchh---hhhhcccccccchhhhhccchhhhheee-c
Confidence 543111 01110 12334455666666666655 4444445555555666666554221000 0
Q ss_pred HHHhcCCCCceEEEee
Q 040527 367 IILRSLPNLGAMEIDF 382 (468)
Q Consensus 367 ~ll~~~p~L~~L~l~~ 382 (468)
+-=..||.|+.|+++.
T Consensus 311 d~WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSS 326 (873)
T ss_pred chhhhcccceeEeccc
Confidence 0112456666666665
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.89 E-value=1.3e-09 Score=121.19 Aligned_cols=282 Identities=16% Similarity=0.122 Sum_probs=159.3
Q ss_pred cCceEEEEEEEecceeeecCCCcc-ccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCcc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNIC-TCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVL 211 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~L 211 (468)
..++.|++.. ......+|..++ .+++|++|+|++|.+... .....+++|++|+|+ +.+.+ .+. ..+.++++|
T Consensus 93 ~~L~~L~Ls~--n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~l~~L~~L~Ls~n~~~~--~~p-~~~~~l~~L 166 (968)
T PLN00113 93 PYIQTINLSN--NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS-IPRGSIPNLETLDLSNNMLSG--EIP-NDIGSFSSL 166 (968)
T ss_pred CCCCEEECCC--CccCCcCChHHhccCCCCCEEECcCCccccc-cCccccCCCCEEECcCCcccc--cCC-hHHhcCCCC
Confidence 5778887763 211235777666 788999999998887653 223568889999998 87753 244 557788899
Q ss_pred ceEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccce---EEEecCCCeeEEEE
Q 040527 212 EDLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVS---YMVHELHSLTEVHF 288 (468)
Q Consensus 212 e~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~---~~~~~~~~L~~~~l 288 (468)
+.|+|.+|...+ .+.......++|+.|.+++|.... ......-..++|+.|+++++.... ..+.++++|+.+++
T Consensus 167 ~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 167 KVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQLVG--QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CEEECccCcccc-cCChhhhhCcCCCeeeccCCCCcC--cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 999998886431 111111134678888888875321 111112245788888888764432 23567778888777
Q ss_pred eeeeecc----cccCcCCCCCCCCchh----hHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecC
Q 040527 289 DIEFDKY----FVEDLQEFDPPNIPAD----RMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEES 360 (468)
Q Consensus 289 ~~~~~~~----~~~~~~~l~~~~~~~~----~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~ 360 (468)
....... .+.++++|+.+.+... .+...+..+++++.|+++.+.+ .......+..+++|+.|++..+..
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l---~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL---SGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee---ccCCChhHcCCCCCcEEECCCCcc
Confidence 6443211 2344555555444111 1223445667777777776655 211111234566777777765432
Q ss_pred CchhHHHHHhcCCCCceEEEeeeecCCCCCCCCCCccCcc--cccceeEEEEEeecCchHHHHHHHHHHhcCcccceEEE
Q 040527 361 GFRLLPIILRSLPNLGAMEIDFLIVGDNLRWTEPQCVPNC--LLLHVKKIEICGFEGLKHELELVKYLLKNSEVLDKMII 438 (468)
Q Consensus 361 ~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~w~~~~~~~~~--~~~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~i 438 (468)
. ..++..+..+|+|+.|++..+.... .+|.. ...+|+.+.+.+..-.. .+..-+.+.+.|+.+.+
T Consensus 321 ~-~~~~~~~~~l~~L~~L~L~~n~l~~--------~~p~~l~~~~~L~~L~Ls~n~l~~----~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 321 T-GKIPVALTSLPRLQVLQLWSNKFSG--------EIPKNLGKHNNLTVLDLSTNNLTG----EIPEGLCSSGNLFKLIL 387 (968)
T ss_pred C-CcCChhHhcCCCCCEEECcCCCCcC--------cCChHHhCCCCCcEEECCCCeeEe----eCChhHhCcCCCCEEEC
Confidence 1 2234446677888888877621111 11111 12567777665322110 01122345677888877
Q ss_pred Ee
Q 040527 439 RS 440 (468)
Q Consensus 439 ~~ 440 (468)
..
T Consensus 388 ~~ 389 (968)
T PLN00113 388 FS 389 (968)
T ss_pred cC
Confidence 64
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.88 E-value=1.5e-09 Score=120.81 Aligned_cols=234 Identities=17% Similarity=0.121 Sum_probs=127.9
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCC-CCCcccCCcccEEEEE-EEecCcccchhhhhccCCcc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVL 211 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~L 211 (468)
..+++|++.... ....+|. ...++|++|+|++|.+... |....++++|++|+|+ +.+.+. +. ..+.++++|
T Consensus 118 ~~L~~L~Ls~n~--l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p-~~~~~l~~L 190 (968)
T PLN00113 118 SSLRYLNLSNNN--FTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK--IP-NSLTNLTSL 190 (968)
T ss_pred CCCCEEECcCCc--cccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc--CC-hhhhhCcCC
Confidence 577777775221 1112332 2356788888887776533 4446677788888887 766432 33 446677778
Q ss_pred ceEEEeeeeccCCCeeeEEE-EcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccc---eEEEecCCCeeEEE
Q 040527 212 EDLLIEIHLEDKHSVTNLNI-SSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLV---SYMVHELHSLTEVH 287 (468)
Q Consensus 212 e~L~L~~c~~~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~---~~~~~~~~~L~~~~ 287 (468)
+.|+|.+|... +...-.+ ..++|+.|.+..|.... ......-..++|++|+++++... ...+.++++|+.++
T Consensus 191 ~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 191 EFLTLASNQLV--GQIPRELGQMKSLKWIYLGYNNLSG--EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266 (968)
T ss_pred CeeeccCCCCc--CcCChHHcCcCCccEEECcCCccCC--cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence 88888777643 1111111 23567777777664321 11111124567777777665432 12345666666666
Q ss_pred Eeeeeecc----cccCcCCCCCCCCch----hhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEec
Q 040527 288 FDIEFDKY----FVEDLQEFDPPNIPA----DRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEE 359 (468)
Q Consensus 288 l~~~~~~~----~~~~~~~l~~~~~~~----~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~ 359 (468)
+....... .+.++++|+.+.+.. ..+...+..+++++.|+++.+.. .......+..+++|+.|++..+.
T Consensus 267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~---~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF---TGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred CcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc---CCcCChhHhcCCCCCEEECcCCC
Confidence 65432211 233445555444411 12334556777888888877766 22211234466777777776543
Q ss_pred CCchhHHHHHhcCCCCceEEEee
Q 040527 360 SGFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 360 ~~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
.. ..++..+..+++|+.|+++.
T Consensus 344 l~-~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 344 FS-GEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred Cc-CcCChHHhCCCCCcEEECCC
Confidence 21 23444566777888887766
No 9
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.74 E-value=8.1e-09 Score=68.71 Aligned_cols=35 Identities=40% Similarity=0.719 Sum_probs=30.8
Q ss_pred cCCCChHHHHHHhcCCCchhhhhhhhhhhhHHHHh
Q 040527 25 ISSLPDEILCHILSFLPIKCAVQTCILSSRWKHLW 59 (468)
Q Consensus 25 ~s~LPd~vL~~Ils~L~~~~~~r~s~vskrWr~lw 59 (468)
+..||+|++..||++|+.+|+++++.|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999764
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.59 E-value=2.1e-09 Score=103.78 Aligned_cols=11 Identities=36% Similarity=0.613 Sum_probs=6.2
Q ss_pred CCeeEEEEecc
Q 040527 260 PNLEHLCIYDD 270 (468)
Q Consensus 260 p~L~~L~l~~~ 270 (468)
++|++|+++++
T Consensus 137 ~~L~~L~L~~n 147 (319)
T cd00116 137 PALEKLVLGRN 147 (319)
T ss_pred CCceEEEcCCC
Confidence 45555555554
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.50 E-value=2.1e-07 Score=104.60 Aligned_cols=103 Identities=17% Similarity=0.045 Sum_probs=60.7
Q ss_pred ccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEE---Ec
Q 040527 158 TCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNI---SS 233 (468)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i---~~ 233 (468)
...+|+.|++.++.+...+.....+++|+.|+|+ +.... .+. . ++.+++|+.|+|.+|. .+..+.. ..
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~--~ip-~-ls~l~~Le~L~L~~c~----~L~~lp~si~~L 680 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK--EIP-D-LSMATNLETLKLSDCS----SLVELPSSIQYL 680 (1153)
T ss_pred CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC--cCC-c-cccCCcccEEEecCCC----Cccccchhhhcc
Confidence 4467777777777776655555677788888887 54322 122 2 5567888888888876 2222221 23
Q ss_pred CcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccc
Q 040527 234 LTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDT 271 (468)
Q Consensus 234 ~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~ 271 (468)
++|+.|.+.+|.... .. ...+..++|+.|+++++.
T Consensus 681 ~~L~~L~L~~c~~L~--~L-p~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 681 NKLEDLDMSRCENLE--IL-PTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCCEEeCCCCCCcC--cc-CCcCCCCCCCEEeCCCCC
Confidence 567777777774211 00 111245677777777763
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.49 E-value=1.5e-07 Score=105.64 Aligned_cols=110 Identities=18% Similarity=0.068 Sum_probs=78.0
Q ss_pred eecCCCccccCccceEEecccc-cCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCee
Q 040527 150 IELPDNICTCKTLEMLKLKLDF-DFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVT 227 (468)
Q Consensus 150 ~~lp~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~ 227 (468)
..+|..+..+++|+.|+|+++. +... |....+++|++|+|. |.... .+. .-+.++++|+.|++.+|. .++
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~i-p~ls~l~~Le~L~L~~c~~L~--~lp-~si~~L~~L~~L~L~~c~----~L~ 695 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKNLKEI-PDLSMATNLETLKLSDCSSLV--ELP-SSIQYLNKLEDLDMSRCE----NLE 695 (1153)
T ss_pred cccccccccCCCCCEEECCCCCCcCcC-CccccCCcccEEEecCCCCcc--ccc-hhhhccCCCCEEeCCCCC----CcC
Confidence 3455566678999999999875 4443 567789999999999 76443 245 557789999999999997 333
Q ss_pred eEE--EEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEecccc
Q 040527 228 NLN--ISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTL 272 (468)
Q Consensus 228 ~~~--i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~ 272 (468)
.+. +..++|+.|.+++|. ....+....++|++|+++++..
T Consensus 696 ~Lp~~i~l~sL~~L~Lsgc~-----~L~~~p~~~~nL~~L~L~~n~i 737 (1153)
T PLN03210 696 ILPTGINLKSLYRLNLSGCS-----RLKSFPDISTNISWLDLDETAI 737 (1153)
T ss_pred ccCCcCCCCCCCEEeCCCCC-----CccccccccCCcCeeecCCCcc
Confidence 332 245789999999985 2223333346788888887754
No 13
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.6e-08 Score=95.99 Aligned_cols=207 Identities=19% Similarity=0.195 Sum_probs=133.5
Q ss_pred ccCccceEEecccccCCCCC--CcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcC
Q 040527 158 TCKTLEMLKLKLDFDFKIPT--SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSL 234 (468)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~ 234 (468)
..+.|+...|.++.+..++. ....||+++.|+|+ +-+..-..+. .+....|+||.|+|..+......-....-..+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~-~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVL-KIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHH-HHHHhcccchhcccccccccCCccccchhhhh
Confidence 34788899999988876532 46689999999999 8888766677 89999999999999998733101112222457
Q ss_pred cccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccc---eEEEecCCCeeEEEEeeeeecccccCcCCCCCCCCchh
Q 040527 235 TLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLV---SYMVHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPAD 311 (468)
Q Consensus 235 ~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 311 (468)
+|+.|.++.|...+ .....+...+|+|+.|.+.++... ..+......|++++++..... +.
T Consensus 198 ~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li---------------~~ 261 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI---------------DF 261 (505)
T ss_pred hhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc---------------cc
Confidence 89999999998653 445556678899999999887421 112233455666655432211 11
Q ss_pred hHHHHhhhcCceeEEEEeccccccccccccc---CCCCCCCcceEEEEEecC-CchhHHHHHhcCCCCceEEEee
Q 040527 312 RMLQLLKGITNTRFLSLSAGIISALDCAFED---YIPTFPYLTYLKVEIEES-GFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 312 ~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~---~~~~~~~L~~L~l~~~~~-~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
........+++|.-|.++.+...++.....+ ....|++|+.|.+..+.. +|..+.+ ++..++|+.|.+..
T Consensus 262 ~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~-l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 262 DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH-LRTLENLKHLRITL 335 (505)
T ss_pred ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccch-hhccchhhhhhccc
Confidence 1123345667777777777766332222111 235788888888876544 4555544 35567777777666
No 14
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.30 E-value=2.5e-07 Score=61.83 Aligned_cols=37 Identities=46% Similarity=0.723 Sum_probs=31.3
Q ss_pred cCCCChHHHHHHhcCCCchhhhhhhhhhhhHHHHhcc
Q 040527 25 ISSLPDEILCHILSFLPIKCAVQTCILSSRWKHLWTS 61 (468)
Q Consensus 25 ~s~LPd~vL~~Ils~L~~~~~~r~s~vskrWr~lw~~ 61 (468)
+.+||+|++.+||++|+.+|+++++.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5689999999999999999999999999999987654
No 15
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.26 E-value=1.4e-08 Score=95.75 Aligned_cols=209 Identities=15% Similarity=0.081 Sum_probs=138.9
Q ss_pred cc-CccceEEecccccCCCC---CCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeee-ccCCCeeeEEE
Q 040527 158 TC-KTLEMLKLKLDFDFKIP---TSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHL-EDKHSVTNLNI 231 (468)
Q Consensus 158 ~~-~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~-~~~~~~~~~~i 231 (468)
+| ..|+.|.|.+|.-.... ....++|++..|.+. +...++..+. .+...|++|+.|++..|. ++...++.+.-
T Consensus 135 Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~-sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 135 RCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLL-SLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred hhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHH-HHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 44 67999999999754431 114589999999999 8888887788 899999999999999986 22112333455
Q ss_pred EcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEE---E--ecCCCeeEEEEeeeeecccccCcCCCCCC
Q 040527 232 SSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYM---V--HELHSLTEVHFDIEFDKYFVEDLQEFDPP 306 (468)
Q Consensus 232 ~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~---~--~~~~~L~~~~l~~~~~~~~~~~~~~l~~~ 306 (468)
.|++|+.|+++.|.....+++..+.-.+.+++.+...||...... . ..++-+.++++ ..+.
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl--------------~~c~ 279 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNL--------------QHCN 279 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccch--------------hhhc
Confidence 689999999999986666666666667777888877776321110 0 11111111111 1112
Q ss_pred CCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecC-CchhHHHHHhcCCCCceEEEee
Q 040527 307 NIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEES-GFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 307 ~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~-~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
.+++..+..+-..+..++.|..+++...+=.++ ..-..+.++|+.|.+..|.. ...+...+-++||.|+.|++..
T Consensus 280 ~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l-~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 280 QLTDEDLWLIACGCHALQVLCYSSCTDITDEVL-WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred cccchHHHHHhhhhhHhhhhcccCCCCCchHHH-HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 234666777777788888888777655110011 11234668888888888765 3466677778888888888876
No 16
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.22 E-value=1.1e-06 Score=56.43 Aligned_cols=34 Identities=50% Similarity=0.660 Sum_probs=31.5
Q ss_pred CChHHHHHHhcCCCchhhhhhhhhhhhHHHHhcc
Q 040527 28 LPDEILCHILSFLPIKCAVQTCILSSRWKHLWTS 61 (468)
Q Consensus 28 LPd~vL~~Ils~L~~~~~~r~s~vskrWr~lw~~ 61 (468)
||+|++..||++|+.+|+++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987643
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.13 E-value=1.6e-08 Score=99.95 Aligned_cols=200 Identities=18% Similarity=0.121 Sum_probs=126.1
Q ss_pred eeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCee
Q 040527 149 LIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVT 227 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~ 227 (468)
...+|+.+|+...|+.|+|+++.+..+|.....-.++-.|+|+ +.+.+- -. .+|.+...|-.|+|++++.. .+.
T Consensus 92 nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetI--Pn-~lfinLtDLLfLDLS~NrLe--~LP 166 (1255)
T KOG0444|consen 92 NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETI--PN-SLFINLTDLLFLDLSNNRLE--MLP 166 (1255)
T ss_pred cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccC--Cc-hHHHhhHhHhhhccccchhh--hcC
Confidence 4578999999999999999999999987778888999999999 887643 24 77888888999999998644 222
Q ss_pred eEEEEcCcccEEEEeeeeecccCCceeEEE----ecCCeeEEEEeccccc----eEEEecCCCeeEEEEeeeeecccccC
Q 040527 228 NLNISSLTLKRLTLSLEKVLFSNTKHQVMI----RAPNLEHLCIYDDTLV----SYMVHELHSLTEVHFDIEFDKYFVED 299 (468)
Q Consensus 228 ~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~----~~p~L~~L~l~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~ 299 (468)
.-......|++|.++++. +..+.+ .+..|+.|.++++... ..++.++.+|.+++++...
T Consensus 167 PQ~RRL~~LqtL~Ls~NP------L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~------- 233 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNP------LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN------- 233 (1255)
T ss_pred HHHHHHhhhhhhhcCCCh------hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-------
Confidence 211123458888888864 222211 2345666777765321 1133444555555543221
Q ss_pred cCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEE
Q 040527 300 LQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAME 379 (468)
Q Consensus 300 ~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~ 379 (468)
...+...+-.+++|+.|.++++.+ .-+... ...-.+|++|+++.+ ....++.-+-..|.|++|+
T Consensus 234 ----------Lp~vPecly~l~~LrrLNLS~N~i---teL~~~-~~~W~~lEtLNlSrN--QLt~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 234 ----------LPIVPECLYKLRNLRRLNLSGNKI---TELNMT-EGEWENLETLNLSRN--QLTVLPDAVCKLTKLTKLY 297 (1255)
T ss_pred ----------CCcchHHHhhhhhhheeccCcCce---eeeecc-HHHHhhhhhhccccc--hhccchHHHhhhHHHHHHH
Confidence 223445666777888888888776 333211 223345666666532 2344555555566677766
Q ss_pred Eee
Q 040527 380 IDF 382 (468)
Q Consensus 380 l~~ 382 (468)
+..
T Consensus 298 ~n~ 300 (1255)
T KOG0444|consen 298 ANN 300 (1255)
T ss_pred hcc
Confidence 654
No 18
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.13 E-value=4.1e-07 Score=84.28 Aligned_cols=141 Identities=16% Similarity=0.085 Sum_probs=73.8
Q ss_pred cCccceEEecccccCCC-----CCCcccCCcccEEEEE-EEecCc--c------cchhhhhccCCccceEEEeeeeccCC
Q 040527 159 CKTLEMLKLKLDFDFKI-----PTSRICFPSLKCLHAE-MYYPHS--T------CITEKLFTICPVLEDLLIEIHLEDKH 224 (468)
Q Consensus 159 ~~~L~~L~L~~~~~~~~-----~~~~~~~~~L~~L~L~-~~~~~~--~------~l~~~l~~~cp~Le~L~L~~c~~~~~ 224 (468)
..+++.|+|+++.+..- .....+-++|+.-+++ +...-. + .+. ..+.+||+|++|+|+.+-++..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~-~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLS-KALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHH-HHHhcCCceeEeeccccccCcc
Confidence 35667777777665321 0112344455665555 221111 0 112 2344677777777777653321
Q ss_pred Ce---eeEEEEcCcccEEEEeeeeecccCCc-----------eeEEEecCCeeEEEEeccccceEEEecCCCeeEEEEee
Q 040527 225 SV---TNLNISSLTLKRLTLSLEKVLFSNTK-----------HQVMIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDI 290 (468)
Q Consensus 225 ~~---~~~~i~~~~L~~L~l~~~~~~~~~~~-----------~~i~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~ 290 (468)
+. ..+--++.+|+.|.+.+|..+...+. ..-.-..|.|+.+....+...
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle----------------- 170 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE----------------- 170 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-----------------
Confidence 11 12222355677777777754332111 111224577777776665432
Q ss_pred eeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccc
Q 040527 291 EFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGII 333 (468)
Q Consensus 291 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~ 333 (468)
+-+ ...+...++..+.++.+.+..+.+
T Consensus 171 --------n~g--------a~~~A~~~~~~~~leevr~~qN~I 197 (382)
T KOG1909|consen 171 --------NGG--------ATALAEAFQSHPTLEEVRLSQNGI 197 (382)
T ss_pred --------ccc--------HHHHHHHHHhccccceEEEecccc
Confidence 111 456677788888888888888776
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.12 E-value=1.5e-07 Score=90.81 Aligned_cols=113 Identities=19% Similarity=0.048 Sum_probs=53.5
Q ss_pred cccCccceEEecccccCCC-CCCcccC---CcccEEEEE-EEecCcc--cchhhhhccC-CccceEEEeeeeccCCCeee
Q 040527 157 CTCKTLEMLKLKLDFDFKI-PTSRICF---PSLKCLHAE-MYYPHST--CITEKLFTIC-PVLEDLLIEIHLEDKHSVTN 228 (468)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~-~~~~~~~---~~L~~L~L~-~~~~~~~--~l~~~l~~~c-p~Le~L~L~~c~~~~~~~~~ 228 (468)
..+++|+.|+|++|.+... +.....+ ++|++|+++ +.+.+.. .+. ..+..+ +.|++|++.+|.....+...
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~-~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA-KGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH-HHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 3456677777776665422 1112222 347777777 6655321 112 223344 66777777777533101111
Q ss_pred E---EEEcCcccEEEEeeeeecccCCceeE---EEecCCeeEEEEeccc
Q 040527 229 L---NISSLTLKRLTLSLEKVLFSNTKHQV---MIRAPNLEHLCIYDDT 271 (468)
Q Consensus 229 ~---~i~~~~L~~L~l~~~~~~~~~~~~~i---~~~~p~L~~L~l~~~~ 271 (468)
+ ...+++|+.|.+.+|.... .....+ ....++|++|+++++.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGD-AGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCch-HHHHHHHHHHHhCCCCCEEeccCCc
Confidence 1 0123457777776664321 000111 1123577777777663
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.09 E-value=7.5e-06 Score=86.49 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=63.6
Q ss_pred eeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCee
Q 040527 149 LIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVT 227 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~ 227 (468)
...+|..+. ++|+.|.+.+|.+...|. ..++|++|+|+ +.+.. +. . ..+.|++|++.+|... .+.
T Consensus 213 LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts---LP-~---lp~sL~~L~Ls~N~L~--~Lp 278 (788)
T PRK15387 213 LTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS---LP-V---LPPGLLELSIFSNPLT--HLP 278 (788)
T ss_pred CCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc---cc-C---cccccceeeccCCchh--hhh
Confidence 346776554 478888888888877633 35788888888 76653 22 2 2367888888877544 322
Q ss_pred eEEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccc
Q 040527 228 NLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLV 273 (468)
Q Consensus 228 ~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~ 273 (468)
. ...+|+.|.+.+|.. ..+....|+|+.|+++++...
T Consensus 279 ~---lp~~L~~L~Ls~N~L------t~LP~~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 279 A---LPSGLCKLWIFGNQL------TSLPVLPPGLQELSVSDNQLA 315 (788)
T ss_pred h---chhhcCEEECcCCcc------ccccccccccceeECCCCccc
Confidence 2 224577777777642 222233467777777776443
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.97 E-value=7.5e-06 Score=86.52 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=34.1
Q ss_pred CceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEec
Q 040527 135 NVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYP 195 (468)
Q Consensus 135 ~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~ 195 (468)
+++.|.+.. +....+|.. .++|++|+|++|.+..+|. ..++|++|+|. +.+.
T Consensus 223 ~L~~L~L~~---N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 223 HITTLVIPD---NNLTSLPAL---PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT 275 (788)
T ss_pred CCCEEEccC---CcCCCCCCC---CCCCcEEEecCCccCcccC---cccccceeeccCCchh
Confidence 556666552 123345542 4789999999998887643 35688888887 6554
No 22
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=8.6e-07 Score=80.43 Aligned_cols=134 Identities=19% Similarity=0.146 Sum_probs=87.7
Q ss_pred HHHhcCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCC---CCcccCCcccEEEEE--EEecCcccchhhh
Q 040527 130 SAIERNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIP---TSRICFPSLKCLHAE--MYYPHSTCITEKL 204 (468)
Q Consensus 130 ~~~~~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~--~~~~~~~~l~~~l 204 (468)
.|-..+++++++.++.+-....+...+.+|+.|..|+|++|.+...- ....--++|+.|+|+ ..--...++. .+
T Consensus 230 iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL 308 (419)
T KOG2120|consen 230 IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TL 308 (419)
T ss_pred HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HH
Confidence 45557999999987766555555556678999999999999875421 112345689999998 3333445678 88
Q ss_pred hccCCccceEEEeeeeccCCCeeeEE----EEcCcccEEEEeeeeecccCCceeEEE-ecCCeeEEEEecc
Q 040527 205 FTICPVLEDLLIEIHLEDKHSVTNLN----ISSLTLKRLTLSLEKVLFSNTKHQVMI-RAPNLEHLCIYDD 270 (468)
Q Consensus 205 ~~~cp~Le~L~L~~c~~~~~~~~~~~----i~~~~L~~L~l~~~~~~~~~~~~~i~~-~~p~L~~L~l~~~ 270 (468)
...||+|.+|+|.+|. .+..-. ..-+-|+.|.++.|+.. .....+.+ .+|.|.+|++.|+
T Consensus 309 ~~rcp~l~~LDLSD~v----~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSV----MLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHhCCceeeecccccc----ccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 8899999999999986 222211 12356777777777632 11122223 4577777776665
No 23
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.89 E-value=1.5e-07 Score=93.29 Aligned_cols=218 Identities=16% Similarity=0.148 Sum_probs=109.2
Q ss_pred CceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccce
Q 040527 135 NVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLED 213 (468)
Q Consensus 135 ~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~ 213 (468)
.++-|.++-. ....+|..+..|.+|+.|.+.++.+..+-.....+|.||.+.+. +.+.+.+ +-..+| ....|..
T Consensus 33 ~~~WLkLnrt---~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsG-iP~diF-~l~dLt~ 107 (1255)
T KOG0444|consen 33 QMTWLKLNRT---KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSG-IPTDIF-RLKDLTI 107 (1255)
T ss_pred heeEEEechh---hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCC-CCchhc-cccccee
Confidence 4455555421 24567777777788888888877776553445567777777777 7666544 331333 4566667
Q ss_pred EEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEE--EecCCCeeEEEEeee
Q 040527 214 LLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYM--VHELHSLTEVHFDIE 291 (468)
Q Consensus 214 L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~--~~~~~~L~~~~l~~~ 291 (468)
|+|+.++.. -...---..+++-.|+++.+... .....+.++..-|-.|+++.+.+..++ +..+..|+.+.++..
T Consensus 108 lDLShNqL~--EvP~~LE~AKn~iVLNLS~N~Ie--tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 108 LDLSHNQLR--EVPTNLEYAKNSIVLNLSYNNIE--TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred eecchhhhh--hcchhhhhhcCcEEEEcccCccc--cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence 777766532 00000112345556666665421 112223344455666666665443221 122233333322211
Q ss_pred eecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccc-cCCCCCCCcceEEEEEecCCchhHHHHHh
Q 040527 292 FDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFE-DYIPTFPYLTYLKVEIEESGFRLLPIILR 370 (468)
Q Consensus 292 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~-~~~~~~~~L~~L~l~~~~~~~~~l~~ll~ 370 (468)
.. ...-..-+.++++|+.|.+++... ..... ..+..+.||+.++++- ++...++..+-
T Consensus 184 PL----------------~hfQLrQLPsmtsL~vLhms~TqR---Tl~N~Ptsld~l~NL~dvDlS~--N~Lp~vPecly 242 (1255)
T KOG0444|consen 184 PL----------------NHFQLRQLPSMTSLSVLHMSNTQR---TLDNIPTSLDDLHNLRDVDLSE--NNLPIVPECLY 242 (1255)
T ss_pred hh----------------hHHHHhcCccchhhhhhhcccccc---hhhcCCCchhhhhhhhhccccc--cCCCcchHHHh
Confidence 00 000001112233444455554433 11111 1333566666666654 34455666777
Q ss_pred cCCCCceEEEee
Q 040527 371 SLPNLGAMEIDF 382 (468)
Q Consensus 371 ~~p~L~~L~l~~ 382 (468)
..++|..|.+++
T Consensus 243 ~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 243 KLRNLRRLNLSG 254 (1255)
T ss_pred hhhhhheeccCc
Confidence 788888888887
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.80 E-value=2.7e-05 Score=82.69 Aligned_cols=196 Identities=17% Similarity=0.206 Sum_probs=105.5
Q ss_pred CceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccce
Q 040527 135 NVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLED 213 (468)
Q Consensus 135 ~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~ 213 (468)
+...|.+... ....+|..+. ++|+.|+|++|.+...|.. .+++|++|+|+ +.+.. +. .-+ .+.|+.
T Consensus 179 ~~~~L~L~~~---~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~--l~~nL~~L~Ls~N~Lts---LP-~~l--~~~L~~ 245 (754)
T PRK15370 179 NKTELRLKIL---GLTTIPACIP--EQITTLILDNNELKSLPEN--LQGNIKTLYANSNQLTS---IP-ATL--PDTIQE 245 (754)
T ss_pred CceEEEeCCC---CcCcCCcccc--cCCcEEEecCCCCCcCChh--hccCCCEEECCCCcccc---CC-hhh--hccccE
Confidence 4455555421 2345665442 5789999999988876443 34689999998 87653 33 211 347899
Q ss_pred EEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEE-ecCCeeEEEEeccccceEEEecCCCeeEEEEeeee
Q 040527 214 LLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMI-RAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDIEF 292 (468)
Q Consensus 214 L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~-~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~ 292 (468)
|.|.+|... .+... ...+|+.|.++++... .+.- -.++|+.|+++++....++-.-.++|+.+++....
T Consensus 246 L~Ls~N~L~--~LP~~--l~s~L~~L~Ls~N~L~------~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~ 315 (754)
T PRK15370 246 MELSINRIT--ELPER--LPSALQSLDLFHNKIS------CLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNS 315 (754)
T ss_pred EECcCCccC--cCChh--HhCCCCEEECcCCccC------ccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCc
Confidence 999988644 22110 1246888888876532 2211 12578899888875543221111233333332111
Q ss_pred ecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcC
Q 040527 293 DKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSL 372 (468)
Q Consensus 293 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~ 372 (468)
+...|. .-.++|+.|.++.+.+ ..+. ..+ .++|+.|+++.+... .++.-+ .
T Consensus 316 ----Lt~LP~---------------~l~~sL~~L~Ls~N~L---t~LP-~~l--~~sL~~L~Ls~N~L~--~LP~~l--p 366 (754)
T PRK15370 316 ----LTALPE---------------TLPPGLKTLEAGENAL---TSLP-ASL--PPELQVLDVSKNQIT--VLPETL--P 366 (754)
T ss_pred ----cccCCc---------------cccccceeccccCCcc---ccCC-hhh--cCcccEEECCCCCCC--cCChhh--c
Confidence 001110 0124677777777665 3221 112 257777777765332 122111 2
Q ss_pred CCCceEEEee
Q 040527 373 PNLGAMEIDF 382 (468)
Q Consensus 373 p~L~~L~l~~ 382 (468)
++|+.|+|++
T Consensus 367 ~~L~~LdLs~ 376 (754)
T PRK15370 367 PTITTLDVSR 376 (754)
T ss_pred CCcCEEECCC
Confidence 5777777775
No 25
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.77 E-value=1.4e-07 Score=96.47 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=34.2
Q ss_pred CCccccCCCChHHHHHHhcCCCchhhhhhhhhhhhHHHHhcc
Q 040527 20 EKMDRISSLPDEILCHILSFLPIKCAVQTCILSSRWKHLWTS 61 (468)
Q Consensus 20 ~~~d~~s~LPd~vL~~Ils~L~~~~~~r~s~vskrWr~lw~~ 61 (468)
...+.....|+.....+....+..+......++++|......
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (482)
T KOG1947|consen 40 PRLRFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS 81 (482)
T ss_pred cceeeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence 344666788999999999999999999999999999865433
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.72 E-value=1.5e-05 Score=68.91 Aligned_cols=63 Identities=24% Similarity=0.263 Sum_probs=28.1
Q ss_pred hhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecC-Cc-hhHHHHHhcCCCCceEEEee
Q 040527 318 KGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEES-GF-RLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 318 ~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~-~~-~~l~~ll~~~p~L~~L~l~~ 382 (468)
..+++|+.|.++.+.+.++..+ ..+..+++|+.|++..++. .. ..=..++..+|+|+.|+-..
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCC--GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred HhCCcCCEEECcCCcCCChHHh--HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 4566677777776666222111 2344666777777765443 12 33356788899999987654
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.70 E-value=3.4e-06 Score=72.87 Aligned_cols=124 Identities=21% Similarity=0.196 Sum_probs=43.5
Q ss_pred CceEEEEEEEecceeeecCCCcc-ccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccc
Q 040527 135 NVGDIELNHVYVDVLIELPDNIC-TCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLE 212 (468)
Q Consensus 135 ~l~~L~l~~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le 212 (468)
+.++|++....- ..+. .+. .+.+|+.|+|++|.+... .....+++|++|+|+ +.+.+-. . .+..+||+|+
T Consensus 20 ~~~~L~L~~n~I---~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~--~-~l~~~lp~L~ 91 (175)
T PF14580_consen 20 KLRELNLRGNQI---STIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSIS--E-GLDKNLPNLQ 91 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-C--H-HHHHH-TT--
T ss_pred cccccccccccc---cccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccc--c-chHHhCCcCC
Confidence 567777763221 1121 233 457899999999998876 567788999999999 8876422 2 3445799999
Q ss_pred eEEEeeeeccCCCeeeEEE--EcCcccEEEEeeeeecccCCceeEEE-ecCCeeEEEEe
Q 040527 213 DLLIEIHLEDKHSVTNLNI--SSLTLKRLTLSLEKVLFSNTKHQVMI-RAPNLEHLCIY 268 (468)
Q Consensus 213 ~L~L~~c~~~~~~~~~~~i--~~~~L~~L~l~~~~~~~~~~~~~i~~-~~p~L~~L~l~ 268 (468)
+|.+.++.+. .+..+.. ..++|+.|.+.++..+.........+ ..|+|+.|+..
T Consensus 92 ~L~L~~N~I~--~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 92 ELYLSNNKIS--DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EEE-TTS-----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EEECcCCcCC--ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9999998755 4333211 34667777777765443333222222 44666666543
No 28
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=2e-05 Score=71.72 Aligned_cols=200 Identities=16% Similarity=0.146 Sum_probs=123.3
Q ss_pred ccceEEecccccCCCCCC---cccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcc
Q 040527 161 TLEMLKLKLDFDFKIPTS---RICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTL 236 (468)
Q Consensus 161 ~L~~L~L~~~~~~~~~~~---~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L 236 (468)
-++.|-+.+|.+...... ...+..++.|+|. +.+++-..+. .++.+.|.|+.|+|..+.... .+.++.....+|
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~-~ile~lP~l~~LNls~N~L~s-~I~~lp~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIG-AILEQLPALTTLNLSCNSLSS-DIKSLPLPLKNL 123 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHH-HHHhcCccceEeeccCCcCCC-ccccCcccccce
Confidence 455667777777553111 2357789999999 9888877788 889999999999999987431 344454455678
Q ss_pred cEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEEEecCCCeeEEEEeeeeeccccc-CcCCCCCCCC------c
Q 040527 237 KRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDIEFDKYFVE-DLQEFDPPNI------P 309 (468)
Q Consensus 237 ~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~-~~~~l~~~~~------~ 309 (468)
++|.+.+....+ .......-+.|.+++|.++.+....+ .++... ++ ..|.+.++.. .
T Consensus 124 ~~lVLNgT~L~w-~~~~s~l~~lP~vtelHmS~N~~rq~-----------n~Dd~c----~e~~s~~v~tlh~~~c~~~~ 187 (418)
T KOG2982|consen 124 RVLVLNGTGLSW-TQSTSSLDDLPKVTELHMSDNSLRQL-----------NLDDNC----IEDWSTEVLTLHQLPCLEQL 187 (418)
T ss_pred EEEEEcCCCCCh-hhhhhhhhcchhhhhhhhccchhhhh-----------cccccc----ccccchhhhhhhcCCcHHHH
Confidence 888888875322 11222333557777777776533211 111000 00 0112222221 2
Q ss_pred hhhHHHHhhhcCceeEEEEecccccccccccc-cCCCCCCCcceEEEEEecC-CchhHHHHHhcCCCCceEEEee
Q 040527 310 ADRMLQLLKGITNTRFLSLSAGIISALDCAFE-DYIPTFPYLTYLKVEIEES-GFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 310 ~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~-~~~~~~~~L~~L~l~~~~~-~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
-.....+.+-++++..+.++.+.+ ...+. .....++.+--|.|+.... +|+++.. +..+|.|..|.+..
T Consensus 188 w~~~~~l~r~Fpnv~sv~v~e~Pl---K~~s~ek~se~~p~~~~LnL~~~~idswasvD~-Ln~f~~l~dlRv~~ 258 (418)
T KOG2982|consen 188 WLNKNKLSRIFPNVNSVFVCEGPL---KTESSEKGSEPFPSLSCLNLGANNIDSWASVDA-LNGFPQLVDLRVSE 258 (418)
T ss_pred HHHHHhHHhhcccchheeeecCcc---cchhhcccCCCCCcchhhhhcccccccHHHHHH-HcCCchhheeeccC
Confidence 345667788899999999999877 44431 1233444444566665544 5566665 68899999999986
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.68 E-value=5.5e-07 Score=93.16 Aligned_cols=80 Identities=14% Similarity=0.076 Sum_probs=46.4
Q ss_pred CccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcccE
Q 040527 160 KTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLKR 238 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~~ 238 (468)
.+|++++++++.+...|.....+++|+.|... +.++. +- .-+..-..|+.|.+.+|... -+......-++|++
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~---lp-~ri~~~~~L~~l~~~~nel~--yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVA---LP-LRISRITSLVSLSAAYNELE--YIPPFLEGLKSLRT 314 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHh---hH-HHHhhhhhHHHHHhhhhhhh--hCCCcccccceeee
Confidence 67888888888877765445568888888887 76642 22 12333455666666666432 11111112345666
Q ss_pred EEEeeee
Q 040527 239 LTLSLEK 245 (468)
Q Consensus 239 L~l~~~~ 245 (468)
|.+..+.
T Consensus 315 LdL~~N~ 321 (1081)
T KOG0618|consen 315 LDLQSNN 321 (1081)
T ss_pred eeehhcc
Confidence 6666654
No 30
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.65 E-value=1.5e-06 Score=90.05 Aligned_cols=198 Identities=18% Similarity=0.217 Sum_probs=97.8
Q ss_pred eecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCc-cceEEEeeeeccCCCee
Q 040527 150 IELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPV-LEDLLIEIHLEDKHSVT 227 (468)
Q Consensus 150 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~-Le~L~L~~c~~~~~~~~ 227 (468)
..+|..++...+|+.|....|.+..+|+...++.+|++|+|. +.+.... + ..+..-+. |+.|....+... ...
T Consensus 277 ~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp--~-~~l~v~~~~l~~ln~s~n~l~--~lp 351 (1081)
T KOG0618|consen 277 VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLP--D-NFLAVLNASLNTLNVSSNKLS--TLP 351 (1081)
T ss_pred HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccc--h-HHHhhhhHHHHHHhhhhcccc--ccc
Confidence 455555666666666666667676666666778888888888 7765432 1 22333322 444444433322 111
Q ss_pred eEE-EEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceE---EEecCCCeeEEEEeeeeecc---cccCc
Q 040527 228 NLN-ISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY---MVHELHSLTEVHFDIEFDKY---FVEDL 300 (468)
Q Consensus 228 ~~~-i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~---~~~~~ 300 (468)
... -..+.|+.|.+.++... +.-..+...+++|+.|+++.+....+ .+.+++.|++++++...... .+..+
T Consensus 352 ~~~e~~~~~Lq~LylanN~Lt--d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~ 429 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLT--DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANL 429 (1081)
T ss_pred cccchhhHHHHHHHHhcCccc--ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhh
Confidence 111 11234666666666532 12222334567777777776654433 34455555555554332110 11122
Q ss_pred CCCCCCCCchh---hHHHHhhhcCceeEEEEeccccccccccccc-CCCCCCCcceEEEEEec
Q 040527 301 QEFDPPNIPAD---RMLQLLKGITNTRFLSLSAGIISALDCAFED-YIPTFPYLTYLKVEIEE 359 (468)
Q Consensus 301 ~~l~~~~~~~~---~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~-~~~~~~~L~~L~l~~~~ 359 (468)
+.|+++..-.. .+. =+..+++|+.++++.+.+ +..... ..|. ++|++|++..+.
T Consensus 430 ~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L---~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNL---SEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHhhcCCceeech-hhhhcCcceEEecccchh---hhhhhhhhCCC-cccceeeccCCc
Confidence 22222211000 111 134566777777777766 322211 2333 677777776544
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=1.3e-05 Score=76.72 Aligned_cols=109 Identities=18% Similarity=0.136 Sum_probs=57.7
Q ss_pred cCccceEEecccccCCCC--CCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEE-EcC
Q 040527 159 CKTLEMLKLKLDFDFKIP--TSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNI-SSL 234 (468)
Q Consensus 159 ~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i-~~~ 234 (468)
.++|+.|.|+.|.+.... .....++.||.|.|+ |.+.. .++. .++..||.|+.|.|.++... ......- ...
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~-k~V~-~~~~~fPsl~~L~L~~N~~~--~~~~~~~~i~~ 246 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW-KDVQ-WILLTFPSLEVLYLEANEII--LIKATSTKILQ 246 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCH-HHHH-HHHHhCCcHHHhhhhccccc--ceecchhhhhh
Confidence 366666666666654320 112356677777777 76663 4466 66777777777777776411 1111111 123
Q ss_pred cccEEEEeeeeecccCCceeEEEecCCeeEEEEecccc
Q 040527 235 TLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTL 272 (468)
Q Consensus 235 ~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~ 272 (468)
+|+.|+++++...+.+ .....-+.|.|+.|++..+..
T Consensus 247 ~L~~LdLs~N~li~~~-~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 247 TLQELDLSNNNLIDFD-QGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred HHhhccccCCcccccc-cccccccccchhhhhccccCc
Confidence 5777777776532111 112223456666666666543
No 32
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.51 E-value=1.9e-06 Score=81.35 Aligned_cols=68 Identities=19% Similarity=0.074 Sum_probs=42.6
Q ss_pred eeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeee
Q 040527 149 LIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHL 220 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~ 220 (468)
-..+|..+....+|+.|+|..+++... |.+.+|..|++|++. +.+.. +.+.+..+.+.|-.|+|..++
T Consensus 195 L~tlP~~lg~l~~L~~LyL~~Nki~~l-Pef~gcs~L~Elh~g~N~i~~---lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 195 LETLPPELGGLESLELLYLRRNKIRFL-PEFPGCSLLKELHVGENQIEM---LPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred hhcCChhhcchhhhHHHHhhhcccccC-CCCCccHHHHHHHhcccHHHh---hHHHHhcccccceeeeccccc
Confidence 456777777777777777777776655 466667777777766 54432 332445555666666666654
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.50 E-value=5.3e-05 Score=80.47 Aligned_cols=220 Identities=11% Similarity=0.094 Sum_probs=100.1
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLE 212 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le 212 (468)
.+++.|.+.. . ....+|..++ ++|+.|+|++|.+...|.. -.++|+.|+|+ +.+.. +. .-+ ...|+
T Consensus 199 ~~L~~L~Ls~--N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~--l~~~L~~L~Ls~N~L~~---LP-~~l--~s~L~ 265 (754)
T PRK15370 199 EQITTLILDN--N-ELKSLPENLQ--GNIKTLYANSNQLTSIPAT--LPDTIQEMELSINRITE---LP-ERL--PSALQ 265 (754)
T ss_pred cCCcEEEecC--C-CCCcCChhhc--cCCCEEECCCCccccCChh--hhccccEEECcCCccCc---CC-hhH--hCCCC
Confidence 3566666652 2 2345666544 4788888888877765332 23467777777 66542 22 111 23577
Q ss_pred eEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEEe-cCCeeEEEEeccccceEEEecCCCeeEEEEeee
Q 040527 213 DLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMIR-APNLEHLCIYDDTLVSYMVHELHSLTEVHFDIE 291 (468)
Q Consensus 213 ~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~-~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~ 291 (468)
.|++.+|... .+.. -..++|+.|.+++|.+.. +... .++|+.|+++++....+...-.++|+.+.+...
T Consensus 266 ~L~Ls~N~L~--~LP~--~l~~sL~~L~Ls~N~Lt~------LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N 335 (754)
T PRK15370 266 SLDLFHNKIS--CLPE--NLPEELRYLSVYDNSIRT------LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN 335 (754)
T ss_pred EEECcCCccC--cccc--ccCCCCcEEECCCCcccc------CcccchhhHHHHHhcCCccccCCccccccceeccccCC
Confidence 7777666433 2211 012357777776664321 1110 124555555554332221111233333333221
Q ss_pred eeccccc-CcCCCCCCCCchhhHHHHhh-hcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCC-c-hhHHH
Q 040527 292 FDKYFVE-DLQEFDPPNIPADRMLQLLK-GITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESG-F-RLLPI 367 (468)
Q Consensus 292 ~~~~~~~-~~~~l~~~~~~~~~~~~~l~-~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~-~-~~l~~ 367 (468)
....... -.+.|+.+.+....+..+.. -.++|+.|+++++.+ ..+.. .+ ...|+.|+++.+... . ..++.
T Consensus 336 ~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~L---t~LP~-~l--~~sL~~LdLs~N~L~~LP~sl~~ 409 (754)
T PRK15370 336 ALTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNAL---TNLPE-NL--PAALQIMQASRNNLVRLPESLPH 409 (754)
T ss_pred ccccCChhhcCcccEEECCCCCCCcCChhhcCCcCEEECCCCcC---CCCCH-hH--HHHHHHHhhccCCcccCchhHHH
Confidence 1000000 00112211111111100000 124566677766655 22210 11 124666666655432 2 44566
Q ss_pred HHhcCCCCceEEEee
Q 040527 368 ILRSLPNLGAMEIDF 382 (468)
Q Consensus 368 ll~~~p~L~~L~l~~ 382 (468)
+...+|++..|.+.+
T Consensus 410 ~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 410 FRGEGPQPTRIIVEY 424 (754)
T ss_pred HhhcCCCccEEEeeC
Confidence 666778888888776
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.44 E-value=3.4e-05 Score=71.80 Aligned_cols=168 Identities=14% Similarity=0.164 Sum_probs=104.9
Q ss_pred cCCcccEEEEE-EEecCc--ccchhhhhccCCccceEEEeeeeccCCCeee------------EEEEcCcccEEEEeeee
Q 040527 181 CFPSLKCLHAE-MYYPHS--TCITEKLFTICPVLEDLLIEIHLEDKHSVTN------------LNISSLTLKRLTLSLEK 245 (468)
Q Consensus 181 ~~~~L~~L~L~-~~~~~~--~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~------------~~i~~~~L~~L~l~~~~ 245 (468)
++|.|++|+|+ +.+... ..+. .+++.|..|++|.|.+|-.+..+-.. ..-..+.|+.+....+.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~-~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLE-ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHH-HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 44555555555 544432 4577 88999999999999999532101011 11123579999999887
Q ss_pred ecccCC--ceeEEEecCCeeEEEEeccccceEEEecCCCeeEEEEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCce
Q 040527 246 VLFSNT--KHQVMIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNT 323 (468)
Q Consensus 246 ~~~~~~--~~~i~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l 323 (468)
...... .....-..|.|+.+.+..+.... . ....+..-+..|++|
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~---------------------------e------G~~al~eal~~~~~L 215 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRP---------------------------E------GVTALAEALEHCPHL 215 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccC---------------------------c------hhHHHHHHHHhCCcc
Confidence 432111 11112234788888876653210 0 023456678889999
Q ss_pred eEEEEeccccccccccc-ccCCCCCCCcceEEEEEecCCch----hHHHHHhcCCCCceEEEee
Q 040527 324 RFLSLSAGIISALDCAF-EDYIPTFPYLTYLKVEIEESGFR----LLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 324 ~~L~l~~~~~~~~~~l~-~~~~~~~~~L~~L~l~~~~~~~~----~l~~ll~~~p~L~~L~l~~ 382 (468)
+.|+|..+++..--... ...++.+++|+.|.++.|..... -+..+-+..|+|+.|.+.+
T Consensus 216 evLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~g 279 (382)
T KOG1909|consen 216 EVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAG 279 (382)
T ss_pred eeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCc
Confidence 99999998882111111 22678889999999999876432 2344555689999999988
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.39 E-value=8.2e-05 Score=52.38 Aligned_cols=58 Identities=26% Similarity=0.232 Sum_probs=47.1
Q ss_pred CccceEEecccccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeee
Q 040527 160 KTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHL 220 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~ 220 (468)
++|++|++++|.+...++ .+.++++|++|+++ +.+.. +....|.++|+|+.|++.+|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~---i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS---IPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE---EETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc---cCHHHHcCCCCCCEEeCcCCc
Confidence 578999999998887754 46789999999999 87753 332678999999999999874
No 36
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.14 E-value=6.9e-06 Score=68.73 Aligned_cols=104 Identities=26% Similarity=0.276 Sum_probs=69.9
Q ss_pred CceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccce
Q 040527 135 NVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLED 213 (468)
Q Consensus 135 ~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~ 213 (468)
++..|.++ .. ....+|+.+-...+|++|.+.++.+.+.|++..+++.||.|++. +.+.. +- .=|..+|.||.
T Consensus 34 ~ITrLtLS--HN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~---lp-rgfgs~p~lev 106 (264)
T KOG0617|consen 34 NITRLTLS--HN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI---LP-RGFGSFPALEV 106 (264)
T ss_pred hhhhhhcc--cC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc---Cc-cccCCCchhhh
Confidence 44445554 22 24567777788889999999999998888888899999999998 76653 23 44778999999
Q ss_pred EEEeeeeccCCCeeeEEEEcCcccEEEEeeee
Q 040527 214 LLIEIHLEDKHSVTNLNISSLTLKRLTLSLEK 245 (468)
Q Consensus 214 L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~ 245 (468)
|+|.+++..+..+.-=...-.+|+.|.+.++.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dnd 138 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDND 138 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCC
Confidence 99999874421111111122356666666654
No 37
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.09 E-value=0.00021 Score=75.30 Aligned_cols=61 Identities=20% Similarity=0.163 Sum_probs=45.1
Q ss_pred CccceEEecccccCCC-CC--CcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeecc
Q 040527 160 KTLEMLKLKLDFDFKI-PT--SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLED 222 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~-~~--~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~ 222 (468)
.+|+.|+++|...... ++ ...-||+|++|.+. ..+..++ +. .+..++|+|..|++.+++..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~-~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FS-QLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HH-HHhhccCccceeecCCCCcc
Confidence 6788888877543322 11 13468999999999 8887655 78 88999999999999998654
No 38
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.07 E-value=9.9e-05 Score=75.46 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=21.8
Q ss_pred cCCcccEEEEE-EEecCcccchhhhhccCCccceEEEee
Q 040527 181 CFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEI 218 (468)
Q Consensus 181 ~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~ 218 (468)
.+++|+.|.+. +.-..+..+. .+...||.|++|.+.+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLD-ALALKCPNLEELDLSG 223 (482)
T ss_pred hCchhhHhhhcccccCChhhHH-HHHhhCchhheecccC
Confidence 35666666666 5444333355 6666666666666665
No 39
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.05 E-value=1e-05 Score=67.79 Aligned_cols=85 Identities=14% Similarity=0.099 Sum_probs=62.7
Q ss_pred CccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEc
Q 040527 155 NICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISS 233 (468)
Q Consensus 155 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~ 233 (468)
-+|+..+++.|.|+++++..+||..+.+.+|..|+++ +.+.+ +- .-++..|+|+.|++..++.. .+..-.=+.
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~---lp-~~issl~klr~lnvgmnrl~--~lprgfgs~ 101 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE---LP-TSISSLPKLRILNVGMNRLN--ILPRGFGSF 101 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh---cC-hhhhhchhhhheecchhhhh--cCccccCCC
Confidence 3578889999999999999999999999999999999 87754 44 55888999999999877532 111111123
Q ss_pred CcccEEEEeeee
Q 040527 234 LTLKRLTLSLEK 245 (468)
Q Consensus 234 ~~L~~L~l~~~~ 245 (468)
|-|+.|++..+.
T Consensus 102 p~levldltynn 113 (264)
T KOG0617|consen 102 PALEVLDLTYNN 113 (264)
T ss_pred chhhhhhccccc
Confidence 456666665543
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.91 E-value=0.00063 Score=62.27 Aligned_cols=210 Identities=18% Similarity=0.182 Sum_probs=118.4
Q ss_pred ccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeee---------------------EEEEc---C
Q 040527 180 ICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTN---------------------LNISS---L 234 (468)
Q Consensus 180 ~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~---------------------~~i~~---~ 234 (468)
..|.+|+++.++ +.. +.+. .+...=|.|+++++.+.... +... +.... +
T Consensus 211 ~~f~~l~~~~~s~~~~---~~i~-~~~~~kptl~t~~v~~s~~~--~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALST---ENIV-DIELLKPTLQTICVHNTTIQ--DVPSLLPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred HHhhhhheeeeeccch---hhee-ceeecCchhheeeeeccccc--ccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence 457778888877 644 3355 66667788888888776421 1110 11111 2
Q ss_pred cccEEEEeeeeecccCCceeEEE---ecCCeeEEEEeccccceE-EEecCCCeeEEEEeeeeecccccCcCCCCCCCCch
Q 040527 235 TLKRLTLSLEKVLFSNTKHQVMI---RAPNLEHLCIYDDTLVSY-MVHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPA 310 (468)
Q Consensus 235 ~L~~L~l~~~~~~~~~~~~~i~~---~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~ 310 (468)
.|+.|+++.+.. ..+.. -+|.++.|+++.+....+ .+..+++|+.++++... -
T Consensus 285 ~LtelDLS~N~I------~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~-----------------L 341 (490)
T KOG1259|consen 285 ELTELDLSGNLI------TQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNL-----------------L 341 (490)
T ss_pred hhhhccccccch------hhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccch-----------------h
Confidence 477777777542 22221 358888888877654322 25566777777665432 3
Q ss_pred hhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecC-CchhHHHHHhcCCCCceEEEeeeecCCCC
Q 040527 311 DRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEES-GFRLLPIILRSLPNLGAMEIDFLIVGDNL 389 (468)
Q Consensus 311 ~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~-~~~~l~~ll~~~p~L~~L~l~~~~~~~~~ 389 (468)
..+..+-..+-|+|+|.++.+.+ +.++ .+..+-.|..|+++.+.. +.+.+.. +++.|.|+.|.+.++....-+
T Consensus 342 s~~~Gwh~KLGNIKtL~La~N~i---E~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~-IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 342 AECVGWHLKLGNIKTLKLAQNKI---ETLS--GLRKLYSLVNLDLSSNQIEELDEVNH-IGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred HhhhhhHhhhcCEeeeehhhhhH---hhhh--hhHhhhhheeccccccchhhHHHhcc-cccccHHHHHhhcCCCccccc
Confidence 34556667788899999988877 5442 233444567777765543 2344433 578899999888762111100
Q ss_pred CCCCCCccCcccccceeEEEEEeecCchHHHHHHHHH
Q 040527 390 RWTEPQCVPNCLLLHVKKIEICGFEGLKHELELVKYL 426 (468)
Q Consensus 390 ~w~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~~~~~l 426 (468)
+.. ..+-+-+-..-.++.+.+-.++..|++-+..+
T Consensus 416 dYR--TKVLa~FGERaSE~~LD~~~~~~~ELDTV~Vl 450 (490)
T KOG1259|consen 416 DYR--TKVLARFGERASEISLDNEPGNQQELDTVLVL 450 (490)
T ss_pred hHH--HHHHHHHhhhhhheecCCCCcchhhhhHHHHH
Confidence 000 00000011233456677777888887766653
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.89 E-value=0.00034 Score=73.77 Aligned_cols=120 Identities=21% Similarity=0.214 Sum_probs=75.7
Q ss_pred hhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecC-CchhHHHHHhcCCCCceEEEeee-ecCC
Q 040527 310 ADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEES-GFRLLPIILRSLPNLGAMEIDFL-IVGD 387 (468)
Q Consensus 310 ~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~-~~~~l~~ll~~~p~L~~L~l~~~-~~~~ 387 (468)
...+..+..++++|..|++++....++. .+..++||+.|.+..-.. ....+..++ +..+|+.|+|+.. ....
T Consensus 162 ~~dF~~lc~sFpNL~sLDIS~TnI~nl~-----GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~ 235 (699)
T KOG3665|consen 162 NDDFSQLCASFPNLRSLDISGTNISNLS-----GISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDD 235 (699)
T ss_pred chhHHHHhhccCccceeecCCCCccCcH-----HHhccccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccc
Confidence 4457788888999999999888773321 245666777776654322 224444433 4788999999872 1111
Q ss_pred CCCCCCCCccCcccccceeEEEEEeecCchHHHHHHHHHHhcCcccceEEEE
Q 040527 388 NLRWTEPQCVPNCLLLHVKKIEICGFEGLKHELELVKYLLKNSEVLDKMIIR 439 (468)
Q Consensus 388 ~~~w~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~i~ 439 (468)
. .-.....+|. .-|.++++.++.|+.-..++++.+++.=|+|+++.+.
T Consensus 236 ~---~ii~qYlec~-~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 236 T---KIIEQYLECG-MVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred h---HHHHHHHHhc-ccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 1 0001112342 2366677777889888888888888888888887754
No 42
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.88 E-value=0.0008 Score=37.94 Aligned_cols=25 Identities=32% Similarity=0.728 Sum_probs=22.9
Q ss_pred cccEEEEE-EEecCcccchhhhhccCC
Q 040527 184 SLKCLHAE-MYYPHSTCITEKLFTICP 209 (468)
Q Consensus 184 ~L~~L~L~-~~~~~~~~l~~~l~~~cp 209 (468)
+||+|+|. |.+.++..++ .++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~-~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLE-RLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHH-HhhccCc
Confidence 58999999 9998877799 9999998
No 43
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.81 E-value=2.1e-06 Score=81.09 Aligned_cols=114 Identities=20% Similarity=0.138 Sum_probs=66.0
Q ss_pred eeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCe
Q 040527 148 VLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSV 226 (468)
Q Consensus 148 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~ 226 (468)
...++|+.+.....++.|+.+++.+...|....+.++|+.|+.+ ..+.. +. .-+..|-.|+.|+..+++.. .+
T Consensus 79 ~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~e---l~-~~i~~~~~l~dl~~~~N~i~--sl 152 (565)
T KOG0472|consen 79 KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKE---LP-DSIGRLLDLEDLDATNNQIS--SL 152 (565)
T ss_pred hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceee---cC-chHHHHhhhhhhhccccccc--cC
Confidence 45677777777777777888877777766667777888888877 66643 33 33455667777777776543 22
Q ss_pred eeEEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEecc
Q 040527 227 TNLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDD 270 (468)
Q Consensus 227 ~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~ 270 (468)
..-...+.+|..|.+.++.. .....-.+.+..|+.|+...+
T Consensus 153 p~~~~~~~~l~~l~~~~n~l---~~l~~~~i~m~~L~~ld~~~N 193 (565)
T KOG0472|consen 153 PEDMVNLSKLSKLDLEGNKL---KALPENHIAMKRLKHLDCNSN 193 (565)
T ss_pred chHHHHHHHHHHhhccccch---hhCCHHHHHHHHHHhcccchh
Confidence 22222334455555555431 111122233455666655444
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.27 E-value=0.0017 Score=42.03 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=21.5
Q ss_pred CccceEEecccccCCCCCCcccCCcccEEEEE-EEec
Q 040527 160 KTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYP 195 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~ 195 (468)
++|++|+|+++.+.++++....+++|++|+++ +.+.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 36777777777776654435666666666666 5554
No 45
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.98 E-value=0.0013 Score=62.46 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=54.7
Q ss_pred ecCCCeeEEEEeeeeecc----cccCcCCCCCCCCchh----hHHHHhhhcCceeEEEEecccccccccccccCCCCCCC
Q 040527 278 HELHSLTEVHFDIEFDKY----FVEDLQEFDPPNIPAD----RMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPY 349 (468)
Q Consensus 278 ~~~~~L~~~~l~~~~~~~----~~~~~~~l~~~~~~~~----~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~ 349 (468)
..+++|+.+++....... .++.+.+++++.++.. .-..+++++++++.|++.++.+ ..+..+.+.....
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~i---t~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQI---TTVAPGAFQTLFS 347 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCee---EEEecccccccce
Confidence 445566666554332211 2445556665555332 2346789999999999999988 6664445666677
Q ss_pred cceEEEEEecC----CchhHHHHHh
Q 040527 350 LTYLKVEIEES----GFRLLPIILR 370 (468)
Q Consensus 350 L~~L~l~~~~~----~~~~l~~ll~ 370 (468)
|.+|.+-.++. ..+++.+-++
T Consensus 348 l~~l~l~~Np~~CnC~l~wl~~Wlr 372 (498)
T KOG4237|consen 348 LSTLNLLSNPFNCNCRLAWLGEWLR 372 (498)
T ss_pred eeeeehccCcccCccchHHHHHHHh
Confidence 88887765432 3355555554
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.79 E-value=0.011 Score=51.35 Aligned_cols=87 Identities=22% Similarity=0.198 Sum_probs=53.5
Q ss_pred ccCccceEEecccccCCCCCC-cccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCc
Q 040527 158 TCKTLEMLKLKLDFDFKIPTS-RICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLT 235 (468)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~ 235 (468)
..+.|.+|.|++|.+..+.+. ..-+|+|++|.|. +.+..-+++. .+ ..||.|+.|++.++... ...
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pL-a~~p~L~~Ltll~Npv~--~k~-------- 129 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PL-ASCPKLEYLTLLGNPVE--HKK-------- 129 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-hh-ccCCccceeeecCCchh--ccc--------
Confidence 346777777777777665333 3356777777777 6666555455 33 34777777777777643 100
Q ss_pred ccEEEEeeeeecccCCceeEEEecCCeeEEEEecc
Q 040527 236 LKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDD 270 (468)
Q Consensus 236 L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~ 270 (468)
+.-..+.-..|+|+.|++.+.
T Consensus 130 --------------~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 130 --------------NYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred --------------CceeEEEEecCcceEeehhhh
Confidence 111233345688999988775
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.47 E-value=0.0025 Score=58.53 Aligned_cols=129 Identities=19% Similarity=0.180 Sum_probs=70.2
Q ss_pred ccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEEe
Q 040527 180 ICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMIR 258 (468)
Q Consensus 180 ~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~ 258 (468)
..+..|++|+|+ +.+.. ++ .-..-.|.++.|+++++... -+..+. ..++|..|+++++... ....+...
T Consensus 281 dTWq~LtelDLS~N~I~~---iD-ESvKL~Pkir~L~lS~N~i~--~v~nLa-~L~~L~~LDLS~N~Ls---~~~Gwh~K 350 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQ---ID-ESVKLAPKLRRLILSQNRIR--TVQNLA-ELPQLQLLDLSGNLLA---ECVGWHLK 350 (490)
T ss_pred chHhhhhhccccccchhh---hh-hhhhhccceeEEecccccee--eehhhh-hcccceEeecccchhH---hhhhhHhh
Confidence 356778888888 76643 44 44445688888888887532 111111 2345555666555321 12223333
Q ss_pred cCCeeEEEEeccccceEEEecCCCeeEEEEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEeccccccccc
Q 040527 259 APNLEHLCIYDDTLVSYMVHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDC 338 (468)
Q Consensus 259 ~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~ 338 (468)
.-|++.|.+.++... .+ .-+..+-++..|++.++.+ +.
T Consensus 351 LGNIKtL~La~N~iE-------------------------~L--------------SGL~KLYSLvnLDl~~N~I---e~ 388 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIE-------------------------TL--------------SGLRKLYSLVNLDLSSNQI---EE 388 (490)
T ss_pred hcCEeeeehhhhhHh-------------------------hh--------------hhhHhhhhheeccccccch---hh
Confidence 455666665554221 11 1133455667777777777 44
Q ss_pred cc-ccCCCCCCCcceEEEEEecC
Q 040527 339 AF-EDYIPTFPYLTYLKVEIEES 360 (468)
Q Consensus 339 l~-~~~~~~~~~L~~L~l~~~~~ 360 (468)
+. ...+.++|.|++|.|..++.
T Consensus 389 ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 389 LDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred HHHhcccccccHHHHHhhcCCCc
Confidence 43 23566777788877766543
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.35 E-value=0.033 Score=48.47 Aligned_cols=100 Identities=21% Similarity=0.306 Sum_probs=62.1
Q ss_pred CccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcccE
Q 040527 160 KTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLKR 238 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~~ 238 (468)
.....++|+.+.+... ..+.++++|.+|.|. +.+.. +++.+-...|+|..|.|.+++.- -+..+.
T Consensus 42 d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~---I~p~L~~~~p~l~~L~LtnNsi~--~l~dl~-------- 107 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITR---IDPDLDTFLPNLKTLILTNNSIQ--ELGDLD-------- 107 (233)
T ss_pred cccceecccccchhhc-ccCCCccccceEEecCCccee---eccchhhhccccceEEecCcchh--hhhhcc--------
Confidence 4567788888877654 556678889999998 87764 33244555788888888887633 111111
Q ss_pred EEEeeeeecccCCceeEEEecCCeeEEEEecccc------ceEEEecCCCeeEEEEe
Q 040527 239 LTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTL------VSYMVHELHSLTEVHFD 289 (468)
Q Consensus 239 L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~------~~~~~~~~~~L~~~~l~ 289 (468)
. ...+|.|++|.+-++.. .-+.+..+|+|+.+++.
T Consensus 108 ---------------p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 108 ---------------P-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ---------------h-hccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 0 11345555555554322 23456778888888764
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.30 E-value=0.016 Score=40.44 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=41.1
Q ss_pred CceEEEEEEEecceeeecCCCcc-ccCccceEEecccccCCCC-CCcccCCcccEEEEE
Q 040527 135 NVGDIELNHVYVDVLIELPDNIC-TCKTLEMLKLKLDFDFKIP-TSRICFPSLKCLHAE 191 (468)
Q Consensus 135 ~l~~L~l~~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~ 191 (468)
+++.|.+.. . ....+|...| .+++|++|++++|.+..++ ..+.++++|++|+|+
T Consensus 2 ~L~~L~l~~--n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 2 NLESLDLSN--N-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS 57 (61)
T ss_dssp TESEEEETS--S-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET
T ss_pred cCcEEECCC--C-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc
Confidence 456677652 2 3557776554 5899999999999998774 457899999999996
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.25 E-value=0.0044 Score=61.73 Aligned_cols=165 Identities=18% Similarity=0.149 Sum_probs=100.8
Q ss_pred CccceEEecccccCCCCCCcccCC-cccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCccc
Q 040527 160 KTLEMLKLKLDFDFKIPTSRICFP-SLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLK 237 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~~~~~~~~~-~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~ 237 (468)
+.++.|.+.++.+...++....++ +|+.|+++ ..+.+ +. .-+..+|.|+.|++.+|+.. .+.......+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~---l~-~~~~~l~~L~~L~l~~N~l~--~l~~~~~~~~~L~ 189 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES---LP-SPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLN 189 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhh---hh-hhhhccccccccccCCchhh--hhhhhhhhhhhhh
Confidence 678999999998888755555553 89999998 77653 31 23668999999999999765 4444333567788
Q ss_pred EEEEeeeeecccCCceeEEE--ecCC-eeEEEEecccc-c-eEEEecCCCeeEEEEeeeeecccccCcCCCCCCCCchhh
Q 040527 238 RLTLSLEKVLFSNTKHQVMI--RAPN-LEHLCIYDDTL-V-SYMVHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADR 312 (468)
Q Consensus 238 ~L~l~~~~~~~~~~~~~i~~--~~p~-L~~L~l~~~~~-~-~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 312 (468)
.|.++++. ...+.- ..++ |++|.+.+... . ...+.+...+..+.+.... ...
T Consensus 190 ~L~ls~N~------i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-----------------~~~ 246 (394)
T COG4886 190 NLDLSGNK------ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-----------------LED 246 (394)
T ss_pred heeccCCc------cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-----------------eee
Confidence 88888875 333332 2444 88888877631 1 1112333333322211100 011
Q ss_pred HHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEe
Q 040527 313 MLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIE 358 (468)
Q Consensus 313 ~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~ 358 (468)
+...+..+++++.|+++.+.. ..+. .+..+.+++.|++...
T Consensus 247 ~~~~~~~l~~l~~L~~s~n~i---~~i~--~~~~~~~l~~L~~s~n 287 (394)
T COG4886 247 LPESIGNLSNLETLDLSNNQI---SSIS--SLGSLTNLRELDLSGN 287 (394)
T ss_pred ccchhccccccceeccccccc---cccc--cccccCccCEEeccCc
Confidence 134566777788888888776 3221 2556667777777653
No 51
>PLN03150 hypothetical protein; Provisional
Probab=95.14 E-value=0.015 Score=61.33 Aligned_cols=106 Identities=13% Similarity=-0.019 Sum_probs=68.3
Q ss_pred ccceEEecccccCCC-CCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcccE
Q 040527 161 TLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLKR 238 (468)
Q Consensus 161 ~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~~ 238 (468)
.++.|+|+++.+... |.....+++|+.|+|+ +.+.+ .+. ..+..++.|+.|+|.+|...+ .+...--..++|+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g--~iP-~~~~~l~~L~~LdLs~N~lsg-~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG--NIP-PSLGSITSLEVLDLSYNSFNG-SIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC--cCC-hHHhCCCCCCEEECCCCCCCC-CCchHHhcCCCCCE
Confidence 378899999888654 5557788999999999 87764 255 567889999999999997551 11111123567999
Q ss_pred EEEeeeeecccCCceeEEEecCCeeEEEEeccc
Q 040527 239 LTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDT 271 (468)
Q Consensus 239 L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~ 271 (468)
|++++|.+.... ...+.-...++..+.+.++.
T Consensus 495 L~Ls~N~l~g~i-P~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 495 LNLNGNSLSGRV-PAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECcCCcccccC-ChHHhhccccCceEEecCCc
Confidence 999988632110 01111112345667776653
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.11 E-value=0.011 Score=54.87 Aligned_cols=37 Identities=32% Similarity=0.538 Sum_probs=34.7
Q ss_pred CccccCCCC----hHHHHHHhcCCCchhhhhhhhhhhhHHH
Q 040527 21 KMDRISSLP----DEILCHILSFLPIKCAVQTCILSSRWKH 57 (468)
Q Consensus 21 ~~d~~s~LP----d~vL~~Ils~L~~~~~~r~s~vskrWr~ 57 (468)
..|-+..|| |++..+||+||+..+++.+-.|||+|++
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r 111 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR 111 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 468889999 9999999999999999999999999985
No 53
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.79 E-value=0.018 Score=53.15 Aligned_cols=36 Identities=28% Similarity=0.492 Sum_probs=30.7
Q ss_pred ccccCCCChHHHHHHhcC-----CCchhhhhhhhhhhhHHH
Q 040527 22 MDRISSLPDEILCHILSF-----LPIKCAVQTCILSSRWKH 57 (468)
Q Consensus 22 ~d~~s~LPd~vL~~Ils~-----L~~~~~~r~s~vskrWr~ 57 (468)
-+.|+.||||||.+||.. |+.+++.++|.|||.|+.
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 345789999999999974 467999999999999974
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=0.0047 Score=56.75 Aligned_cols=86 Identities=14% Similarity=0.076 Sum_probs=59.2
Q ss_pred CCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCee---eEEEEcCcccEEEEeeeeecccCCceeEEE
Q 040527 182 FPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVT---NLNISSLTLKRLTLSLEKVLFSNTKHQVMI 257 (468)
Q Consensus 182 ~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~---~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~ 257 (468)
...+.-|.|. +.+.+.+++. .+-+.|..+.+|+|.++... +.. .+.-.-|.|+.|+++.+...++ +.....
T Consensus 44 ~ra~ellvln~~~id~~gd~~-~~~~~~~~v~elDL~~N~iS--dWseI~~ile~lP~l~~LNls~N~L~s~--I~~lp~ 118 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVM-LFGSSVTDVKELDLTGNLIS--DWSEIGAILEQLPALTTLNLSCNSLSSD--IKSLPL 118 (418)
T ss_pred ccchhhheecCCCCCcchhHH-HHHHHhhhhhhhhcccchhc--cHHHHHHHHhcCccceEeeccCCcCCCc--cccCcc
Confidence 3356688888 8888888888 88899999999999999754 332 2333467888888888764321 112222
Q ss_pred ecCCeeEEEEecccc
Q 040527 258 RAPNLEHLCIYDDTL 272 (468)
Q Consensus 258 ~~p~L~~L~l~~~~~ 272 (468)
-..+|+.|-+.|+..
T Consensus 119 p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 119 PLKNLRVLVLNGTGL 133 (418)
T ss_pred cccceEEEEEcCCCC
Confidence 335788888877643
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.58 E-value=0.012 Score=38.12 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=28.5
Q ss_pred CcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeecc
Q 040527 183 PSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLED 222 (468)
Q Consensus 183 ~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~ 222 (468)
++|++|+|+ +.+.+ +. ..+++||+|+.|++.+|.+.
T Consensus 1 ~~L~~L~l~~N~i~~---l~-~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD---LP-PELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS---HG-GHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc---cC-chHhCCCCCCEEEecCCCCC
Confidence 579999999 88864 66 66789999999999999755
No 56
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.35 E-value=0.046 Score=59.56 Aligned_cols=68 Identities=21% Similarity=0.113 Sum_probs=38.0
Q ss_pred eeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeee
Q 040527 149 LIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIH 219 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c 219 (468)
...||..+...-+|++|+|++..+...|.+...+..|.+|++. ..... .+. .+....++|+.|.+...
T Consensus 584 l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~--~~~-~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 584 LSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE--SIP-GILLELQSLRVLRLPRS 652 (889)
T ss_pred cCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc--ccc-chhhhcccccEEEeecc
Confidence 4456665555566666666666555555555566666666665 33221 123 44555666666666664
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.02 E-value=0.018 Score=52.40 Aligned_cols=165 Identities=18% Similarity=0.104 Sum_probs=90.3
Q ss_pred hhccCCccceEEEeeeeccCCC---eeeEEEEcCcccEEEEeeeeecccCCc-----------eeEEEecCCeeEEEEec
Q 040527 204 LFTICPVLEDLLIEIHLEDKHS---VTNLNISSLTLKRLTLSLEKVLFSNTK-----------HQVMIRAPNLEHLCIYD 269 (468)
Q Consensus 204 l~~~cp~Le~L~L~~c~~~~~~---~~~~~i~~~~L~~L~l~~~~~~~~~~~-----------~~i~~~~p~L~~L~l~~ 269 (468)
.+.+||+|+..+|+.+-++..- +..+..++..|+.|.+++|..++..+. ..=.-++|.|+++....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 3456777777777777542100 011112344577777777764432111 01123568888888776
Q ss_pred cccceEE-------EecCCCeeEEEEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEeccccccccccc--
Q 040527 270 DTLVSYM-------VHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAF-- 340 (468)
Q Consensus 270 ~~~~~~~-------~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~-- 340 (468)
+++.+.+ +..--.|+.+.+..... -|. |+ ..-...-+..+.+++.|++..+++ ....
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgI------rpe----gv-~~L~~~gl~y~~~LevLDlqDNtf---t~~gS~ 232 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGI------RPE----GV-TMLAFLGLFYSHSLEVLDLQDNTF---TLEGSR 232 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCc------Ccc----hh-HHHHHHHHHHhCcceeeeccccch---hhhhHH
Confidence 6543221 11112444444432211 010 00 111223346688999999998887 3221
Q ss_pred --ccCCCCCCCcceEEEEEecCCchhHHHHHhc-----CCCCceEEEee
Q 040527 341 --EDYIPTFPYLTYLKVEIEESGFRLLPIILRS-----LPNLGAMEIDF 382 (468)
Q Consensus 341 --~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~-----~p~L~~L~l~~ 382 (468)
...++.-++|+.|.+..|-....+...+++. .|+|+.|..+.
T Consensus 233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccch
Confidence 1246677789999998887766666666664 47888877665
No 58
>PLN03150 hypothetical protein; Provisional
Probab=93.76 E-value=0.04 Score=58.20 Aligned_cols=82 Identities=13% Similarity=0.028 Sum_probs=46.7
Q ss_pred ccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEEecCCee
Q 040527 185 LKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLE 263 (468)
Q Consensus 185 L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~ 263 (468)
++.|+|+ +.+.+ .+. .-+..+++|+.|+|.+|...+ .+....-..++|+.|+++.|.... ......-..++|+
T Consensus 420 v~~L~L~~n~L~g--~ip-~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg--~iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQGLRG--FIP-NDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNG--SIPESLGQLTSLR 493 (623)
T ss_pred EEEEECCCCCccc--cCC-HHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCC--CCchHHhcCCCCC
Confidence 6677777 66543 244 456677888888888776431 111111234567888877775321 1111223567788
Q ss_pred EEEEecccc
Q 040527 264 HLCIYDDTL 272 (468)
Q Consensus 264 ~L~l~~~~~ 272 (468)
.|+++++..
T Consensus 494 ~L~Ls~N~l 502 (623)
T PLN03150 494 ILNLNGNSL 502 (623)
T ss_pred EEECcCCcc
Confidence 888777643
No 59
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=93.61 E-value=0.019 Score=62.54 Aligned_cols=17 Identities=12% Similarity=-0.040 Sum_probs=10.1
Q ss_pred CCCCCCCcceEEEEEec
Q 040527 343 YIPTFPYLTYLKVEIEE 359 (468)
Q Consensus 343 ~~~~~~~L~~L~l~~~~ 359 (468)
....+.+|+.|++..|.
T Consensus 712 ~~~~l~~L~~L~i~~~~ 728 (889)
T KOG4658|consen 712 SLGSLGNLEELSILDCG 728 (889)
T ss_pred ccccccCcceEEEEcCC
Confidence 34556666666666553
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.59 E-value=0.026 Score=51.01 Aligned_cols=84 Identities=23% Similarity=0.083 Sum_probs=58.3
Q ss_pred ccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEE--cC
Q 040527 158 TCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNIS--SL 234 (468)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~--~~ 234 (468)
....|+.|++.++.+... ..+-.+|+||+|.++ +.+.....+. -++..||+|++|++.++... .+..+.-- -+
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~-vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLE-VLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccce-ehhhhCCceeEEeecCCccc--cccccchhhhhc
Confidence 346788888888877654 445568899999999 8555555677 77888999999999998754 33333211 23
Q ss_pred cccEEEEeeee
Q 040527 235 TLKRLTLSLEK 245 (468)
Q Consensus 235 ~L~~L~l~~~~ 245 (468)
+|.+|.+.+|.
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 46666666665
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.21 E-value=0.033 Score=50.41 Aligned_cols=64 Identities=17% Similarity=0.087 Sum_probs=38.9
Q ss_pred HHhhhcCceeEEEEeccccccccccc-ccCCCCCCCcceEEEEEecC-Cc-hhHHHHHhcCCCCceEEEe
Q 040527 315 QLLKGITNTRFLSLSAGIISALDCAF-EDYIPTFPYLTYLKVEIEES-GF-RLLPIILRSLPNLGAMEID 381 (468)
Q Consensus 315 ~~l~~~~~l~~L~l~~~~~~~~~~l~-~~~~~~~~~L~~L~l~~~~~-~~-~~l~~ll~~~p~L~~L~l~ 381 (468)
-++..+++++.|+++++.+ ..++ ...++.++||..|++..|.. .. ..=..++.-.|+|+.|+-.
T Consensus 85 vl~e~~P~l~~l~ls~Nki---~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 85 VLAEKAPNLKVLNLSGNKI---KDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred ehhhhCCceeEEeecCCcc---ccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 3445567777777777777 4332 23566777888888877754 22 2224456666777776533
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.00 E-value=0.17 Score=49.74 Aligned_cols=90 Identities=17% Similarity=0.122 Sum_probs=49.2
Q ss_pred ccCccceEEecccccCCCCCCcccCC-cccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCc
Q 040527 158 TCKTLEMLKLKLDFDFKIPTSRICFP-SLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLT 235 (468)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~~~~~~~~-~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~ 235 (468)
.|.++..|++++|.+...| .+| +|++|.++ +.-. ..+. ..+ .+.|++|.+.+|. .+..+ .++
T Consensus 50 ~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nL--tsLP-~~L--P~nLe~L~Ls~Cs----~L~sL---P~s 113 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP----VLPNELTEITIENCNNL--TTLP-GSI--PEGLEKLTVCHCP----EISGL---PES 113 (426)
T ss_pred HhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCc--ccCC-chh--hhhhhheEccCcc----ccccc---ccc
Confidence 3567778888877666542 244 58888877 5322 1122 212 3578888888874 22221 245
Q ss_pred ccEEEEeeeeecccCCceeEEEecCCeeEEEEec
Q 040527 236 LKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYD 269 (468)
Q Consensus 236 L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~ 269 (468)
|+.|.+..+. ...+..-.++|++|.+.+
T Consensus 114 Le~L~L~~n~------~~~L~~LPssLk~L~I~~ 141 (426)
T PRK15386 114 VRSLEIKGSA------TDSIKNVPNGLTSLSINS 141 (426)
T ss_pred cceEEeCCCC------CcccccCcchHhheeccc
Confidence 7777765432 222333335677776643
No 63
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.88 E-value=0.071 Score=51.62 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=32.4
Q ss_pred cCCCChHHHHHHhcCCC-chhhhhhhhhhhhHHHHhcc
Q 040527 25 ISSLPDEILCHILSFLP-IKCAVQTCILSSRWKHLWTS 61 (468)
Q Consensus 25 ~s~LPd~vL~~Ils~L~-~~~~~r~s~vskrWr~lw~~ 61 (468)
-++||+|+|..|..+|+ .-|++|.+.|||.||..-..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 36899999999999995 67999999999999986443
No 64
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=92.66 E-value=0.01 Score=61.00 Aligned_cols=38 Identities=18% Similarity=0.043 Sum_probs=23.8
Q ss_pred CceEEEEEEEecceeeecCCCccccCccceEEecccccC
Q 040527 135 NVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDF 173 (468)
Q Consensus 135 ~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~ 173 (468)
..+.+.+.-....++.. |-.+|...+|++|.|.+|.+.
T Consensus 85 kt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 85 KTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLS 122 (1096)
T ss_pred hheeeeecccCCCCCCC-CceeccccceeeEEecCcchh
Confidence 34444444223323333 777888899999999988643
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.62 E-value=0.031 Score=55.68 Aligned_cols=169 Identities=20% Similarity=0.205 Sum_probs=101.6
Q ss_pred CceEEEEEEEecceeeecCCCccccC-ccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccc
Q 040527 135 NVGDIELNHVYVDVLIELPDNICTCK-TLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLE 212 (468)
Q Consensus 135 ~l~~L~l~~~~~~~~~~lp~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le 212 (468)
.+..+.+.. .....+|......+ +|+.|+++++.+...+.....+++|+.|+++ +.+.+ +. ......+.|+
T Consensus 117 ~l~~L~l~~---n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~---l~-~~~~~~~~L~ 189 (394)
T COG4886 117 NLTSLDLDN---NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD---LP-KLLSNLSNLN 189 (394)
T ss_pred ceeEEecCC---cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh---hh-hhhhhhhhhh
Confidence 455555542 23567777766664 9999999999998764457799999999999 87764 34 4444789999
Q ss_pred eEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccce--EEEecCCCeeEEEEee
Q 040527 213 DLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVS--YMVHELHSLTEVHFDI 290 (468)
Q Consensus 213 ~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~--~~~~~~~~L~~~~l~~ 290 (468)
.|.+.++... .+....-....|+.|.+..+.. .......-...++..+.+.+..... -.+.++++++.+++..
T Consensus 190 ~L~ls~N~i~--~l~~~~~~~~~L~~l~~~~N~~---~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 190 NLDLSGNKIS--DLPPEIELLSALEELDLSNNSI---IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN 264 (394)
T ss_pred heeccCCccc--cCchhhhhhhhhhhhhhcCCcc---eecchhhhhcccccccccCCceeeeccchhccccccceecccc
Confidence 9999998654 2222111223488888888731 0111112233555555544443332 2344455555554432
Q ss_pred eeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccc
Q 040527 291 EFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGII 333 (468)
Q Consensus 291 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~ 333 (468)
... ..+.. +..+.+++.|+++++..
T Consensus 265 n~i-----------------~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 265 NQI-----------------SSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccc-----------------ccccc-ccccCccCEEeccCccc
Confidence 211 01111 56677888888887655
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=89.92 E-value=0.21 Score=45.73 Aligned_cols=237 Identities=13% Similarity=0.038 Sum_probs=113.3
Q ss_pred eEEeecCCCCCcCCCCCcHHHHHHHHHh--cCceEEEEE-EEecceeeecCC-------CccccCccceEEecccccCCC
Q 040527 106 KFSVHCSEPNIYLTDLPPLKSWVSSAIE--RNVGDIELN-HVYVDVLIELPD-------NICTCKTLEMLKLKLDFDFKI 175 (468)
Q Consensus 106 ~~~l~~~~~~~~~~~~~~~~~wl~~~~~--~~l~~L~l~-~~~~~~~~~lp~-------~~~~~~~L~~L~L~~~~~~~~ 175 (468)
.+.++.+.... -+..|+....+ ++++...++ .+.+.....+|. .+..|+.|+..+|+.|-+..-
T Consensus 34 evdLSGNtigt------EA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 34 EVDLSGNTIGT------EAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred EEeccCCcccH------HHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 45555544433 35578876555 555555553 122222223332 334566666666666654331
Q ss_pred CCCcccCCcccEEEEEEEecCcccchhhhhccCCccceEEEeeeeccCCCeeeE------------EEEcCcccEEEEee
Q 040527 176 PTSRICFPSLKCLHAEMYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNL------------NISSLTLKRLTLSL 243 (468)
Q Consensus 176 ~~~~~~~~~L~~L~L~~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~------------~i~~~~L~~L~l~~ 243 (468)
....+. .+++.-..|++|.+.+|-.+..+-..+ .-..|.|++.....
T Consensus 108 --------------------~~e~L~-d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 108 --------------------FPEELG-DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred --------------------cchHHH-HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 012355 666666667777777764220000000 01234566665555
Q ss_pred eeecccCCc-eeEEE-ecCCeeEEEEeccccceE--------EEecCCCeeEEEEeeeeecccccCcCCCCCCCCchhhH
Q 040527 244 EKVLFSNTK-HQVMI-RAPNLEHLCIYDDTLVSY--------MVHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADRM 313 (468)
Q Consensus 244 ~~~~~~~~~-~~i~~-~~p~L~~L~l~~~~~~~~--------~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 313 (468)
+.+...... ....+ ...+|+.+.+..+....- .+..+.+|+.+++....... . ....+
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~----~--------gS~~L 234 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL----E--------GSRYL 234 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh----h--------hHHHH
Confidence 542211000 00001 114566666655422111 12334555555554322100 0 03345
Q ss_pred HHHhhhcCceeEEEEeccccccc--cccccc--CCCCCCCcceEEEEEecCCc-----hhHHHHHh-cCCCCceEEEee
Q 040527 314 LQLLKGITNTRFLSLSAGIISAL--DCAFED--YIPTFPYLTYLKVEIEESGF-----RLLPIILR-SLPNLGAMEIDF 382 (468)
Q Consensus 314 ~~~l~~~~~l~~L~l~~~~~~~~--~~l~~~--~~~~~~~L~~L~l~~~~~~~-----~~l~~ll~-~~p~L~~L~l~~ 382 (468)
...+..-+.++.|.+..|.+++- ... .. .-..+|||..|...++.... ..+..+.+ +.|-|..|.+.+
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v-~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSV-LRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHH-HHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 55666666788898888876220 111 11 22356788888888765421 23444433 567777777775
No 67
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=89.61 E-value=0.11 Score=49.84 Aligned_cols=83 Identities=16% Similarity=0.045 Sum_probs=52.4
Q ss_pred ccCccceEEecccccCCC-CCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEE-cC
Q 040527 158 TCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNIS-SL 234 (468)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~-~~ 234 (468)
..++|++|+|+++.+..+ +..+.+...|++|.|. +.+.. +...+|.+...|+.|+|.+++++ .+...... ..
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~---v~~~~f~~ls~L~tL~L~~N~it--~~~~~aF~~~~ 346 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF---VSSGMFQGLSGLKTLSLYDNQIT--TVAPGAFQTLF 346 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHH---HHHHhhhccccceeeeecCCeeE--EEecccccccc
Confidence 357788888888877666 4456677788888887 76653 22266777888888888887654 32222222 23
Q ss_pred cccEEEEeeee
Q 040527 235 TLKRLTLSLEK 245 (468)
Q Consensus 235 ~L~~L~l~~~~ 245 (468)
+|.+|.+-.+.
T Consensus 347 ~l~~l~l~~Np 357 (498)
T KOG4237|consen 347 SLSTLNLLSNP 357 (498)
T ss_pred eeeeeehccCc
Confidence 45555555543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.48 E-value=0.031 Score=51.02 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=9.6
Q ss_pred HHHHhcCCCCceEE
Q 040527 366 PIILRSLPNLGAME 379 (468)
Q Consensus 366 ~~ll~~~p~L~~L~ 379 (468)
..+++.+|||++|+
T Consensus 110 ~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 110 RKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHcccchhcc
Confidence 44667777777775
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=89.27 E-value=0.52 Score=46.42 Aligned_cols=54 Identities=15% Similarity=0.057 Sum_probs=28.9
Q ss_pred cCCccceEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEE-EecCCeeEEEEecc
Q 040527 207 ICPVLEDLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVM-IRAPNLEHLCIYDD 270 (468)
Q Consensus 207 ~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~-~~~p~L~~L~l~~~ 270 (468)
.|+.++.|++.+|... .+..-.++|++|.+.+|. .+..+. .-.++|++|.+++|
T Consensus 50 ~~~~l~~L~Is~c~L~-----sLP~LP~sLtsL~Lsnc~-----nLtsLP~~LP~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-----SLPVLPNELTEITIENCN-----NLTTLPGSIPEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-----ccCCCCCCCcEEEccCCC-----CcccCCchhhhhhhheEccCc
Confidence 3677777777777433 222222357777777664 111111 11356777777765
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.75 E-value=0.066 Score=46.66 Aligned_cols=69 Identities=19% Similarity=0.141 Sum_probs=41.8
Q ss_pred ecCCCccccCccceEEecccccCCC-CCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeee
Q 040527 151 ELPDNICTCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHL 220 (468)
Q Consensus 151 ~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~ 220 (468)
.+|..-..--.++.++=+++.+... ...+.++++++.|.+. |...++..++ .+-...|+||.|+|.+|.
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~-~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLE-RLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHH-HhcccccchheeeccCCC
Confidence 5554322223455555555544321 1224466777777777 7777766677 777777778888888776
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=85.64 E-value=0.44 Score=25.44 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=13.2
Q ss_pred ccceEEecccccCCCCCC
Q 040527 161 TLEMLKLKLDFDFKIPTS 178 (468)
Q Consensus 161 ~L~~L~L~~~~~~~~~~~ 178 (468)
+|++|+|++|.+..+|+.
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 578888988887765443
No 72
>PF13013 F-box-like_2: F-box-like domain
Probab=85.61 E-value=0.91 Score=35.73 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=31.7
Q ss_pred ccCCCChHHHHHHhcCCCchhhhhhhhhhh--hH-HHH-hccC
Q 040527 24 RISSLPDEILCHILSFLPIKCAVQTCILSS--RW-KHL-WTSL 62 (468)
Q Consensus 24 ~~s~LPd~vL~~Ils~L~~~~~~r~s~vsk--rW-r~l-w~~~ 62 (468)
.+.+||+|++..||.+-+..+...+...|+ +| ++. |..+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~~~~~L 63 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDHIWYLL 63 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999988888887 44 433 5544
No 73
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=85.42 E-value=0.1 Score=52.34 Aligned_cols=105 Identities=20% Similarity=0.190 Sum_probs=59.6
Q ss_pred ccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcC
Q 040527 156 ICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSL 234 (468)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~ 234 (468)
+..+.+|+.|.+..+.+..+......+++|++|+|+ +.+.+-..+. .++.|+.|.+.+|.+. .+..+.. .+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~-----~l~~L~~L~l~~N~i~--~~~~~~~-l~ 162 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS-----TLTLLKELNLSGNLIS--DISGLES-LK 162 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh-----hccchhhheeccCcch--hccCCcc-ch
Confidence 344577888888888777652225677888888888 7666543333 4455888888887644 3332221 45
Q ss_pred cccEEEEeeeeecccCCceeEEEecCCeeEEEEecc
Q 040527 235 TLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDD 270 (468)
Q Consensus 235 ~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~ 270 (468)
.|+.+.+..+........ . ....++|+.+.+.++
T Consensus 163 ~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGN 196 (414)
T ss_pred hhhcccCCcchhhhhhhh-h-hhhccchHHHhccCC
Confidence 566666666653211110 0 133455666665554
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.19 E-value=0.19 Score=43.88 Aligned_cols=10 Identities=10% Similarity=0.252 Sum_probs=5.5
Q ss_pred cccceEEEEe
Q 040527 431 EVLDKMIIRS 440 (468)
Q Consensus 431 ~~L~~l~i~~ 440 (468)
++|+++.|+.
T Consensus 176 knLr~L~l~~ 185 (221)
T KOG3864|consen 176 KNLRRLHLYD 185 (221)
T ss_pred hhhHHHHhcC
Confidence 5555555554
No 75
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=83.71 E-value=0.51 Score=48.66 Aligned_cols=40 Identities=33% Similarity=0.468 Sum_probs=36.6
Q ss_pred CCCccccCCCChHHHHHHhcCCCchhhhhhhhhhhhHHHH
Q 040527 19 QEKMDRISSLPDEILCHILSFLPIKCAVQTCILSSRWKHL 58 (468)
Q Consensus 19 ~~~~d~~s~LPd~vL~~Ils~L~~~~~~r~s~vskrWr~l 58 (468)
....|.++.||-++...||++|+.++++++++||+.|+.+
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 4467899999999999999999999999999999999854
No 76
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=80.75 E-value=0.6 Score=46.81 Aligned_cols=79 Identities=23% Similarity=0.165 Sum_probs=33.8
Q ss_pred CccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcccE
Q 040527 160 KTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLKR 238 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~~ 238 (468)
..++.+.+..+.+.........+.+|..|+|. ..+.. +. .++..|++|+.|+|.++.+. .+..+.- .+.|+.
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~---i~-~~l~~~~~L~~L~ls~N~I~--~i~~l~~-l~~L~~ 144 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK---IE-NLLSSLVNLQVLDLSFNKIT--KLEGLST-LTLLKE 144 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhh---cc-cchhhhhcchheeccccccc--cccchhh-ccchhh
Confidence 34444444444433211223445555555555 44432 23 33444555555555555433 2222221 122555
Q ss_pred EEEeeee
Q 040527 239 LTLSLEK 245 (468)
Q Consensus 239 L~l~~~~ 245 (468)
|.+.+|.
T Consensus 145 L~l~~N~ 151 (414)
T KOG0531|consen 145 LNLSGNL 151 (414)
T ss_pred heeccCc
Confidence 5555543
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=80.18 E-value=1.2 Score=22.12 Aligned_cols=15 Identities=20% Similarity=0.051 Sum_probs=8.6
Q ss_pred CccceEEecccccCC
Q 040527 160 KTLEMLKLKLDFDFK 174 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~ 174 (468)
++|+.|+|++|.+..
T Consensus 1 ~~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTS 15 (17)
T ss_dssp TT-SEEEETSS--SS
T ss_pred CccCEEECCCCCCCC
Confidence 367888888887654
No 78
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=79.70 E-value=0.15 Score=52.90 Aligned_cols=35 Identities=26% Similarity=0.204 Sum_probs=15.3
Q ss_pred CccceEEecccccCCCCCCcccCCcccEEEEE-EEec
Q 040527 160 KTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYP 195 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~ 195 (468)
+.|+.|+|++|++.++ .....|+.|++|+|+ +.+.
T Consensus 187 ~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred HHhhhhccchhhhhhh-HHHHhcccccccccccchhc
Confidence 3344444444444443 223344444444444 4443
No 79
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.08 E-value=0.25 Score=45.33 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=37.0
Q ss_pred ccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeee
Q 040527 158 TCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHL 220 (468)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~ 220 (468)
.++.|++|.|+-|.+... ..+..|.+|++|.|. +.+.+-..+. -+.+.|+|+.|.|..+.
T Consensus 39 kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~--YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELE--YLKNLPSLRTLWLDENP 99 (388)
T ss_pred hcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHH--HHhcCchhhhHhhccCC
Confidence 446677777777766654 445567777777777 6665433222 24467777777777665
No 80
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=73.69 E-value=0.2 Score=50.53 Aligned_cols=35 Identities=17% Similarity=0.021 Sum_probs=20.5
Q ss_pred ceeEEEEecccccccccccccCCCCCCCcceEEEEEecC
Q 040527 322 NTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEES 360 (468)
Q Consensus 322 ~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~ 360 (468)
.|..|+++.+.. ..+.. .+..+..|+.|.|..+..
T Consensus 212 pLi~lDfScNki---s~iPv-~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 212 PLIRLDFSCNKI---SYLPV-DFRKMRHLQVLQLENNPL 246 (722)
T ss_pred ceeeeecccCce---eecch-hhhhhhhheeeeeccCCC
Confidence 456788888766 33311 234566677777776544
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=63.11 E-value=2.1 Score=23.80 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=6.1
Q ss_pred CCccceEEEeeee
Q 040527 208 CPVLEDLLIEIHL 220 (468)
Q Consensus 208 cp~Le~L~L~~c~ 220 (468)
||.|++|+|.+|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4444444444443
No 82
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=61.92 E-value=1.6 Score=35.97 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=34.9
Q ss_pred CccceEEecccccCCCCCCc-ccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeec
Q 040527 160 KTLEMLKLKLDFDFKIPTSR-ICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLE 221 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~ 221 (468)
..|+..+|++|.+.++|+.+ .-||.+++|+|. +.+.+.. + . ++..|.|+.|++.++..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvP--e-E-~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVP--E-E-LAAMPALRSLNLRFNPL 112 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhch--H-H-HhhhHHhhhcccccCcc
Confidence 45566666777666664443 345667777777 6665422 1 2 66667777777777653
No 83
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=59.55 E-value=3.7 Score=37.47 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=38.0
Q ss_pred ccccCCCChHHHHHHhcCCC-chhhhhhhhhhhhH------HHHhccCceeEeecCcc
Q 040527 22 MDRISSLPDEILCHILSFLP-IKCAVQTCILSSRW------KHLWTSLPCLCFDDSLW 72 (468)
Q Consensus 22 ~d~~s~LPd~vL~~Ils~L~-~~~~~r~s~vskrW------r~lw~~~~~L~~~~~~~ 72 (468)
.-.+.+||.+++..|+.+|+ -+|++.++.+--.- |.+|+.+-..+|....+
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi 256 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI 256 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45789999999999999995 89999999872111 35677766566665554
No 84
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=59.38 E-value=1 Score=45.71 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=17.8
Q ss_pred ecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE
Q 040527 151 ELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE 191 (468)
Q Consensus 151 ~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~ 191 (468)
.+|.-++.| -|+.|-++++++...|...+..+.|..|+.+
T Consensus 135 ~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 135 HLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred cCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhh
Confidence 344433333 3444445555444443333444444444444
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=52.77 E-value=8.1 Score=20.79 Aligned_cols=14 Identities=29% Similarity=0.147 Sum_probs=6.8
Q ss_pred CccceEEecccccC
Q 040527 160 KTLEMLKLKLDFDF 173 (468)
Q Consensus 160 ~~L~~L~L~~~~~~ 173 (468)
++|+.|+|++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666543
No 86
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=41.39 E-value=1.9 Score=35.50 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=48.8
Q ss_pred eeecCCCccc-cCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeee
Q 040527 149 LIELPDNICT-CKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIH 219 (468)
Q Consensus 149 ~~~lp~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c 219 (468)
.-.+|..+.. .+.++.|+|.++.+.++|.....+|.||.|++. +.+... - .++....+|-.|+..++
T Consensus 65 fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~---p-~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 65 FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAE---P-RVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccc---h-HHHHHHHhHHHhcCCCC
Confidence 4556654332 368999999999999987778999999999999 888653 2 44544555666665554
No 87
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=38.32 E-value=22 Score=27.30 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=22.2
Q ss_pred cccCCCChHHHHHHhcCCCchhhhh
Q 040527 23 DRISSLPDEILCHILSFLPIKCAVQ 47 (468)
Q Consensus 23 d~~s~LPd~vL~~Ils~L~~~~~~r 47 (468)
...+.||.|+...|+++|+..|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6778999999999999999988754
No 88
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=37.91 E-value=22 Score=19.40 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=13.7
Q ss_pred CccceEEecccccCCCCC
Q 040527 160 KTLEMLKLKLDFDFKIPT 177 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~~~ 177 (468)
++|+.|+|++|.+..+|+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 478888888888877643
No 89
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=37.91 E-value=22 Score=19.40 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=13.7
Q ss_pred CccceEEecccccCCCCC
Q 040527 160 KTLEMLKLKLDFDFKIPT 177 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~~~ 177 (468)
++|+.|+|++|.+..+|+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 478888888888877643
No 90
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=35.35 E-value=40 Score=26.83 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=27.5
Q ss_pred cccCccceEEecccccCCC-CCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEee
Q 040527 157 CTCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEI 218 (468)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~ 218 (468)
..|.+|+.+.+... +..+ ...+.++++|+++++. . +.. +....|.+|+.|+.+.+..
T Consensus 9 ~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~~---i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 9 YNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LTS---IGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TT-TT--EEEETST---EE-TTTTTT-TT-SEEEESST-TSC---E-TTTTTT-TT-EEEEETS
T ss_pred hCCCCCCEEEECCC-eeEeChhhccccccccccccccc-ccc---cceeeeecccccccccccc
Confidence 34668888887642 3222 2335667778877776 3 221 1115577787788777754
No 91
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=24.15 E-value=21 Score=33.85 Aligned_cols=39 Identities=33% Similarity=0.470 Sum_probs=33.3
Q ss_pred cCCCChHHHHHHhcCCCchhhhhhhhhhhhHHHHhccCc
Q 040527 25 ISSLPDEILCHILSFLPIKCAVQTCILSSRWKHLWTSLP 63 (468)
Q Consensus 25 ~s~LPd~vL~~Ils~L~~~~~~r~s~vskrWr~lw~~~~ 63 (468)
+..+|+++++.|++++.-+++.++|.|++|-..+-...|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 457899999999999999999999999999876544433
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=24.10 E-value=44 Score=18.83 Aligned_cols=13 Identities=23% Similarity=-0.018 Sum_probs=7.3
Q ss_pred ccceEEecccccC
Q 040527 161 TLEMLKLKLDFDF 173 (468)
Q Consensus 161 ~L~~L~L~~~~~~ 173 (468)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666655554
Done!