Query 040527
Match_columns 468
No_of_seqs 172 out of 2044
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 14:53:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.8 3E-21 1E-25 201.1 8.7 36 26-61 14-50 (592)
2 2p1m_B Transport inhibitor res 99.8 1.1E-21 3.6E-26 204.6 4.5 38 21-58 2-40 (594)
3 2ast_B S-phase kinase-associat 99.8 8.9E-22 3E-26 190.3 -1.0 192 21-270 5-205 (336)
4 4fcg_A Uncharacterized protein 99.3 9.8E-13 3.3E-17 126.3 6.2 202 128-382 75-286 (328)
5 2z80_A TOLL-like receptor 2, v 99.3 5.4E-11 1.9E-15 115.3 15.2 255 134-429 52-329 (353)
6 4fmz_A Internalin; leucine ric 99.2 6.9E-12 2.4E-16 121.2 5.1 253 156-441 62-321 (347)
7 3o6n_A APL1; leucine-rich repe 99.2 1.6E-11 5.4E-16 120.8 7.3 81 134-220 69-152 (390)
8 1o6v_A Internalin A; bacterial 99.2 3.1E-11 1.1E-15 121.6 7.5 74 134-217 90-164 (466)
9 2id5_A Lingo-1, leucine rich r 99.2 9.9E-12 3.4E-16 125.6 3.6 236 134-382 56-305 (477)
10 4fcg_A Uncharacterized protein 99.2 2.1E-11 7.2E-16 116.9 5.6 220 160-440 81-310 (328)
11 3oja_B Anopheles plasmodium-re 99.1 2.1E-11 7.3E-16 126.8 5.4 61 316-382 273-333 (597)
12 3ogk_B Coronatine-insensitive 99.1 7.2E-12 2.5E-16 130.1 1.8 264 157-440 267-547 (592)
13 1o6v_A Internalin A; bacterial 99.1 1.3E-11 4.5E-16 124.4 3.5 267 134-440 68-340 (466)
14 4fmz_A Internalin; leucine ric 99.1 3.6E-12 1.2E-16 123.3 -0.7 58 317-382 239-296 (347)
15 3o6n_A APL1; leucine-rich repe 99.1 1.7E-12 5.7E-17 127.8 -3.0 146 134-289 45-194 (390)
16 2z66_A Variable lymphocyte rec 99.1 2.1E-11 7.1E-16 115.7 3.0 247 149-426 19-273 (306)
17 2id5_A Lingo-1, leucine rich r 99.1 7.6E-12 2.6E-16 126.5 -0.4 148 134-291 32-186 (477)
18 2z80_A TOLL-like receptor 2, v 99.1 1.5E-10 5.1E-15 112.1 8.6 183 149-382 43-231 (353)
19 3t6q_A CD180 antigen; protein- 99.1 2.5E-12 8.7E-17 134.0 -5.2 216 156-382 274-509 (606)
20 4ecn_A Leucine-rich repeat pro 99.1 8E-12 2.7E-16 134.0 -1.5 219 152-382 440-706 (876)
21 3g06_A SSPH2 (leucine-rich rep 99.1 1.4E-10 4.8E-15 120.3 7.7 51 160-220 61-112 (622)
22 3v47_A TOLL-like receptor 5B a 99.1 2.3E-11 7.8E-16 122.1 1.7 111 316-440 294-404 (455)
23 2ast_B S-phase kinase-associat 99.1 1.5E-12 5E-17 125.3 -6.8 139 124-270 36-178 (336)
24 4eco_A Uncharacterized protein 99.1 5.5E-12 1.9E-16 132.1 -3.3 204 152-382 239-466 (636)
25 2p1m_B Transport inhibitor res 99.1 3.5E-12 1.2E-16 132.5 -4.8 281 134-438 211-538 (594)
26 3oja_B Anopheles plasmodium-re 99.1 2.9E-12 9.9E-17 133.3 -5.7 228 134-382 75-310 (597)
27 3zyi_A Leucine-rich repeat-con 99.0 2.2E-11 7.6E-16 122.2 0.4 82 134-220 75-158 (452)
28 3rgz_A Protein brassinosteroid 99.0 6.8E-12 2.3E-16 134.4 -3.7 134 149-290 89-232 (768)
29 3t6q_A CD180 antigen; protein- 99.0 2.1E-11 7.1E-16 127.1 -0.3 275 134-431 278-577 (606)
30 2z7x_B TOLL-like receptor 1, v 99.0 7.9E-10 2.7E-14 112.9 11.1 159 262-440 304-477 (520)
31 2z63_A TOLL-like receptor 4, v 99.0 4E-11 1.4E-15 123.9 1.0 82 134-220 76-160 (570)
32 2z81_A CD282 antigen, TOLL-lik 99.0 1.1E-09 3.8E-14 112.5 11.5 221 134-382 26-260 (549)
33 3j0a_A TOLL-like receptor 5; m 99.0 7.1E-10 2.4E-14 120.0 10.4 84 134-221 73-160 (844)
34 3vq2_A TLR4, TOLL-like recepto 99.0 1E-10 3.5E-15 121.8 3.6 82 134-220 80-164 (606)
35 1ogq_A PGIP-2, polygalacturona 99.0 7.2E-11 2.5E-15 112.4 2.2 219 135-382 51-277 (313)
36 3zyj_A Leucine-rich repeat-con 99.0 3E-11 1E-15 120.8 -0.9 63 155-220 83-147 (440)
37 3j0a_A TOLL-like receptor 5; m 99.0 4.9E-10 1.7E-14 121.2 8.5 105 134-245 266-373 (844)
38 4ecn_A Leucine-rich repeat pro 99.0 1.5E-11 5E-16 132.0 -3.5 231 134-382 491-762 (876)
39 3oja_A Leucine-rich immune mol 99.0 6.5E-11 2.2E-15 119.8 1.4 208 158-413 32-247 (487)
40 3o53_A Protein LRIM1, AGAP0063 99.0 4.3E-11 1.5E-15 114.2 -0.3 230 159-439 33-270 (317)
41 2ca6_A RAN GTPase-activating p 99.0 1.3E-11 4.4E-16 121.3 -4.3 68 315-382 181-253 (386)
42 1xku_A Decorin; proteoglycan, 99.0 4.8E-11 1.7E-15 114.5 -0.3 61 317-382 212-272 (330)
43 1z7x_W Ribonuclease inhibitor; 99.0 4.1E-12 1.4E-16 127.8 -8.6 244 126-382 19-293 (461)
44 4eco_A Uncharacterized protein 99.0 2E-11 6.9E-16 127.8 -3.6 189 134-333 249-469 (636)
45 2z63_A TOLL-like receptor 4, v 99.0 7.1E-11 2.4E-15 122.0 0.2 204 151-382 273-479 (570)
46 3rgz_A Protein brassinosteroid 98.9 5.8E-11 2E-15 127.1 -1.4 148 134-289 100-255 (768)
47 3bz5_A Internalin-J, INLJ; leu 98.9 1.6E-10 5.4E-15 116.0 1.6 136 133-291 41-180 (457)
48 3v47_A TOLL-like receptor 5B a 98.9 1.1E-10 3.9E-15 117.0 0.2 261 134-427 79-421 (455)
49 3g06_A SSPH2 (leucine-rich rep 98.9 1.5E-09 5.1E-14 112.6 8.4 129 134-290 61-190 (622)
50 1ozn_A Reticulon 4 receptor; N 98.9 7E-11 2.4E-15 110.8 -1.5 196 160-382 32-234 (285)
51 1ziw_A TOLL-like receptor 3; i 98.9 5.6E-11 1.9E-15 125.6 -3.1 121 259-382 404-545 (680)
52 3vq2_A TLR4, TOLL-like recepto 98.9 5.9E-11 2E-15 123.6 -2.8 257 156-441 281-555 (606)
53 2z7x_B TOLL-like receptor 1, v 98.9 8.8E-10 3E-14 112.5 5.8 121 134-270 21-148 (520)
54 2z81_A CD282 antigen, TOLL-lik 98.9 2.6E-09 8.9E-14 109.7 9.4 241 149-440 17-260 (549)
55 2ft3_A Biglycan; proteoglycan, 98.9 3E-11 1E-15 116.1 -5.3 269 151-440 47-329 (332)
56 1h6u_A Internalin H; cell adhe 98.9 5.7E-10 2E-14 105.9 3.6 186 133-382 40-226 (308)
57 2xwt_C Thyrotropin receptor; s 98.9 9.4E-10 3.2E-14 100.3 4.6 200 149-411 23-234 (239)
58 2ft3_A Biglycan; proteoglycan, 98.9 2.3E-10 7.9E-15 109.8 -0.5 200 153-382 95-303 (332)
59 3zyi_A Leucine-rich repeat-con 98.9 6.5E-10 2.2E-14 111.5 2.7 192 134-358 99-300 (452)
60 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 1.9E-08 6.6E-13 103.6 13.6 82 134-222 76-159 (562)
61 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 3.7E-09 1.3E-13 109.0 7.8 77 134-221 100-181 (562)
62 3o53_A Protein LRIM1, AGAP0063 98.8 1.6E-10 5.5E-15 110.2 -2.5 236 124-382 22-271 (317)
63 1p9a_G Platelet glycoprotein I 98.8 8.8E-10 3E-14 103.6 2.4 174 156-382 6-181 (290)
64 1xku_A Decorin; proteoglycan, 98.8 8.9E-10 3.1E-14 105.6 2.4 216 134-382 76-302 (330)
65 2ca6_A RAN GTPase-activating p 98.8 3.3E-11 1.1E-15 118.3 -8.6 137 134-272 32-199 (386)
66 3zyj_A Leucine-rich repeat-con 98.8 9.3E-10 3.2E-14 109.9 1.9 204 134-370 88-305 (440)
67 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 3.1E-09 1E-13 71.9 3.8 39 21-59 5-43 (53)
68 3oja_A Leucine-rich immune mol 98.8 4.2E-10 1.4E-14 113.8 -0.7 224 135-381 35-270 (487)
69 1wwl_A Monocyte differentiatio 98.8 1.6E-09 5.4E-14 103.0 3.2 178 158-382 93-283 (312)
70 1ozn_A Reticulon 4 receptor; N 98.8 3.4E-10 1.2E-14 106.1 -2.2 197 134-359 32-236 (285)
71 2o6q_A Variable lymphocyte rec 98.8 1.1E-09 3.9E-14 101.7 1.3 67 151-222 30-98 (270)
72 3bz5_A Internalin-J, INLJ; leu 98.8 1.4E-09 4.9E-14 109.0 2.0 216 134-382 64-295 (457)
73 1h6u_A Internalin H; cell adhe 98.8 4.3E-09 1.5E-13 99.8 4.7 166 133-359 62-228 (308)
74 2z66_A Variable lymphocyte rec 98.8 6.5E-11 2.2E-15 112.3 -8.0 204 151-382 42-257 (306)
75 1z7x_W Ribonuclease inhibitor; 98.7 2.8E-11 9.5E-16 121.7 -11.4 262 156-440 24-322 (461)
76 1ogq_A PGIP-2, polygalacturona 98.7 2.2E-09 7.5E-14 102.1 1.3 218 134-382 76-300 (313)
77 4ezg_A Putative uncharacterize 98.7 1.7E-08 5.9E-13 88.9 6.3 58 158-221 42-100 (197)
78 2z62_A TOLL-like receptor 4, v 98.7 1.4E-09 4.8E-14 101.4 -1.1 53 325-382 181-233 (276)
79 3goz_A Leucine-rich repeat-con 98.7 3.6E-10 1.2E-14 109.9 -5.4 208 160-382 22-262 (362)
80 1h6t_A Internalin B; cell adhe 98.6 8.5E-09 2.9E-13 96.9 3.1 58 157-220 65-123 (291)
81 1ziw_A TOLL-like receptor 3; i 98.6 1.7E-09 5.9E-14 114.1 -2.0 62 156-220 349-416 (680)
82 1wwl_A Monocyte differentiatio 98.6 5.5E-10 1.9E-14 106.2 -5.4 108 318-440 198-305 (312)
83 2o6q_A Variable lymphocyte rec 98.6 9.7E-09 3.3E-13 95.4 2.7 83 134-222 37-122 (270)
84 3rfs_A Internalin B, repeat mo 98.6 3.6E-09 1.2E-13 98.4 -0.5 30 259-288 132-164 (272)
85 2z62_A TOLL-like receptor 4, v 98.6 1.1E-09 3.7E-14 102.2 -4.3 90 149-245 19-111 (276)
86 3rfs_A Internalin B, repeat mo 98.6 7.7E-09 2.7E-13 96.1 0.3 189 134-382 41-231 (272)
87 1m9s_A Internalin B; cell inva 98.5 1.2E-08 4E-13 105.7 1.0 38 317-359 171-208 (605)
88 1p9a_G Platelet glycoprotein I 98.5 2.9E-09 9.9E-14 100.0 -3.2 178 150-358 23-205 (290)
89 1jl5_A Outer protein YOPM; leu 98.5 3.1E-08 1.1E-12 99.1 3.9 117 135-272 132-249 (454)
90 2xwt_C Thyrotropin receptor; s 98.5 7.8E-08 2.7E-12 87.4 6.2 125 134-272 31-168 (239)
91 3m19_A Variable lymphocyte rec 98.5 1.2E-08 4.2E-13 93.6 0.7 67 150-221 27-95 (251)
92 3goz_A Leucine-rich repeat-con 98.5 2.6E-09 8.8E-14 103.8 -4.7 257 165-438 3-288 (362)
93 4glp_A Monocyte differentiatio 98.5 7.1E-09 2.4E-13 98.4 -1.7 62 160-221 91-157 (310)
94 1jl5_A Outer protein YOPM; leu 98.5 3.7E-08 1.3E-12 98.6 2.7 115 160-291 131-247 (454)
95 4glp_A Monocyte differentiatio 98.5 8.9E-09 3E-13 97.7 -2.6 93 124-221 81-181 (310)
96 1xeu_A Internalin C; cellular 98.5 6.7E-08 2.3E-12 89.3 3.4 146 156-359 37-183 (263)
97 1h6t_A Internalin B; cell adhe 98.4 1E-07 3.5E-12 89.5 3.1 102 158-272 44-146 (291)
98 4ezg_A Putative uncharacterize 98.4 1.2E-07 4.3E-12 83.3 2.5 127 133-271 43-170 (197)
99 1m9s_A Internalin B; cell inva 98.3 7.1E-08 2.4E-12 99.8 0.9 147 156-333 61-209 (605)
100 2ell_A Acidic leucine-rich nuc 98.3 8.2E-08 2.8E-12 82.1 0.5 132 134-272 24-159 (168)
101 3m19_A Variable lymphocyte rec 98.3 1.3E-07 4.5E-12 86.6 2.0 83 134-222 35-120 (251)
102 4g8a_A TOLL-like receptor 4; l 98.3 1.9E-06 6.4E-11 89.7 11.0 61 157-220 73-135 (635)
103 4ay9_X Follicle-stimulating ho 98.3 4.8E-07 1.7E-11 87.2 5.5 112 149-270 21-138 (350)
104 1xeu_A Internalin C; cellular 98.3 2.5E-08 8.6E-13 92.2 -3.6 163 159-382 18-181 (263)
105 2ell_A Acidic leucine-rich nuc 98.3 1.5E-07 5.1E-12 80.5 0.9 79 160-245 24-106 (168)
106 2ra8_A Uncharacterized protein 98.3 9.8E-08 3.3E-12 92.2 -0.3 82 181-268 137-227 (362)
107 3cvr_A Invasion plasmid antige 98.2 2E-06 6.9E-11 88.0 8.3 183 134-360 59-242 (571)
108 3cvr_A Invasion plasmid antige 98.2 3.6E-07 1.2E-11 93.6 2.2 173 160-382 59-239 (571)
109 2v9t_B SLIT homolog 2 protein 98.2 2.9E-07 9.8E-12 82.6 1.2 67 150-221 24-92 (220)
110 3e4g_A ATP synthase subunit S, 98.2 2.1E-07 7E-12 79.4 -0.1 95 149-245 50-150 (176)
111 2je0_A Acidic leucine-rich nuc 98.1 1.5E-07 5.3E-12 78.6 -2.6 84 134-222 17-101 (149)
112 2e31_A FBS1, F-box only protei 98.1 1.6E-06 5.6E-11 79.9 3.8 37 22-58 48-85 (297)
113 3e6j_A Variable lymphocyte rec 98.1 1.5E-06 5E-11 78.4 3.2 69 149-222 31-101 (229)
114 2o6s_A Variable lymphocyte rec 98.0 1.3E-06 4.5E-11 77.3 2.2 68 150-222 20-89 (208)
115 4g8a_A TOLL-like receptor 4; l 98.0 2.1E-06 7.2E-11 89.3 4.1 69 149-222 43-113 (635)
116 2je0_A Acidic leucine-rich nuc 98.0 2.2E-07 7.6E-12 77.6 -2.9 121 160-288 17-147 (149)
117 4ay9_X Follicle-stimulating ho 98.0 6.5E-06 2.2E-10 79.2 7.0 213 134-382 30-255 (350)
118 1ds9_A Outer arm dynein; leuci 98.0 2.1E-07 7.1E-12 81.9 -4.4 110 152-272 40-152 (198)
119 1ds9_A Outer arm dynein; leuci 97.9 8.9E-07 3E-11 77.8 -0.8 40 178-222 43-83 (198)
120 3e4g_A ATP synthase subunit S, 97.9 5.4E-07 1.9E-11 76.8 -2.4 87 181-271 59-150 (176)
121 1a9n_A U2A', U2A'; complex (nu 97.9 1.5E-06 5.1E-11 74.8 0.2 106 157-271 16-124 (176)
122 2o6s_A Variable lymphocyte rec 97.9 2.2E-06 7.7E-11 75.8 1.4 83 134-222 28-113 (208)
123 3e6j_A Variable lymphocyte rec 97.9 2E-06 6.8E-11 77.5 1.0 128 134-271 40-170 (229)
124 2v70_A SLIT-2, SLIT homolog 2 97.9 1.5E-06 5.1E-11 77.8 0.1 38 318-358 126-163 (220)
125 2v70_A SLIT-2, SLIT homolog 2 97.9 1.1E-06 3.8E-11 78.7 -1.3 147 163-382 14-162 (220)
126 3l2o_B F-box only protein 4; s 97.8 4E-06 1.4E-10 76.4 1.6 34 24-57 4-37 (312)
127 2xot_A Amphoterin-induced prot 97.8 1.7E-06 5.9E-11 83.7 -1.8 67 150-221 31-100 (361)
128 2v9t_B SLIT homolog 2 protein 97.8 4.2E-06 1.4E-10 74.9 0.7 128 134-271 32-163 (220)
129 1a9n_A U2A', U2A'; complex (nu 97.7 3.3E-06 1.1E-10 72.6 -1.0 133 177-382 13-149 (176)
130 2xot_A Amphoterin-induced prot 97.7 8.7E-06 3E-10 78.7 1.3 132 134-273 39-176 (361)
131 3un9_A NLR family member X1; l 97.7 6E-07 2E-11 87.2 -7.0 70 313-382 175-248 (372)
132 2wfh_A SLIT homolog 2 protein 97.6 9.9E-06 3.4E-10 70.8 -0.2 89 150-245 23-113 (193)
133 3v7d_B Cell division control p 97.5 2.3E-05 7.9E-10 78.0 2.2 41 19-59 9-49 (464)
134 1w8a_A SLIT protein; signaling 97.5 1.2E-05 4E-10 70.2 -0.1 90 149-245 20-113 (192)
135 1dce_A Protein (RAB geranylger 97.5 1.6E-05 5.4E-10 81.6 0.5 60 156-220 459-519 (567)
136 3sb4_A Hypothetical leucine ri 97.5 2.8E-05 9.7E-10 74.0 1.6 110 311-437 216-327 (329)
137 1dce_A Protein (RAB geranylger 97.4 1.9E-05 6.3E-10 81.1 -0.1 103 160-272 441-545 (567)
138 2wfh_A SLIT homolog 2 protein 97.4 5.2E-05 1.8E-09 66.1 2.1 83 134-222 31-115 (193)
139 1w8a_A SLIT protein; signaling 97.4 3.8E-05 1.3E-09 66.9 1.2 56 163-222 11-67 (192)
140 2o6r_A Variable lymphocyte rec 97.4 3.1E-05 1.1E-09 66.4 0.5 113 150-271 20-135 (177)
141 2ovr_B FBW7, F-BOX/WD repeat p 97.3 0.00013 4.5E-09 72.1 4.1 38 20-57 14-51 (445)
142 1p22_A F-BOX/WD-repeat protein 97.3 6E-05 2E-09 74.5 1.4 37 21-57 7-47 (435)
143 2o6r_A Variable lymphocyte rec 97.2 0.00011 3.6E-09 63.0 2.4 104 134-245 28-135 (177)
144 2ra8_A Uncharacterized protein 97.2 5.5E-05 1.9E-09 72.8 0.2 59 156-218 168-228 (362)
145 3sb4_A Hypothetical leucine ri 97.2 0.00019 6.4E-09 68.2 3.6 193 159-380 100-328 (329)
146 4b8c_D Glucose-repressible alc 97.2 2.9E-05 9.9E-10 82.2 -2.4 109 154-271 218-327 (727)
147 2r9u_A Variable lymphocyte rec 97.1 0.00016 5.3E-09 61.9 2.0 69 149-222 24-94 (174)
148 3g39_A Variable lymphocyte rec 97.0 0.00019 6.6E-09 61.0 2.0 69 149-222 21-91 (170)
149 4b8c_D Glucose-repressible alc 97.0 7.8E-05 2.7E-09 78.9 -1.0 104 134-246 224-328 (727)
150 2ifg_A High affinity nerve gro 96.9 0.0002 6.7E-09 68.6 1.3 92 149-246 21-115 (347)
151 3g39_A Variable lymphocyte rec 96.9 0.00076 2.6E-08 57.3 4.6 83 134-222 30-115 (170)
152 2r9u_A Variable lymphocyte rec 96.9 0.00077 2.6E-08 57.5 4.6 83 134-222 33-118 (174)
153 4fdw_A Leucine rich hypothetic 96.7 0.00032 1.1E-08 68.5 0.9 58 317-382 296-354 (401)
154 3un9_A NLR family member X1; l 96.3 0.00062 2.1E-08 65.8 -0.1 140 208-382 71-220 (372)
155 4fdw_A Leucine rich hypothetic 96.0 0.0011 3.8E-08 64.7 -0.1 190 156-382 131-332 (401)
156 1io0_A Tropomodulin; LRR prote 95.3 0.00032 1.1E-08 60.6 -6.3 58 158-216 63-128 (185)
157 2ifg_A High affinity nerve gro 94.6 0.017 6E-07 54.8 3.4 83 134-222 31-116 (347)
158 1io0_A Tropomodulin; LRR prote 94.1 0.018 6E-07 49.4 1.8 125 310-441 25-161 (185)
159 4fs7_A Uncharacterized protein 93.7 0.012 4.1E-07 57.2 0.0 60 316-382 315-375 (394)
160 3rw6_A Nuclear RNA export fact 93.2 0.0097 3.3E-07 54.2 -1.5 21 90-110 114-135 (267)
161 3rw6_A Nuclear RNA export fact 92.5 0.032 1.1E-06 50.8 1.0 62 181-245 168-231 (267)
162 4gt6_A Cell surface protein; l 83.0 0.37 1.3E-05 46.5 1.4 55 158-217 263-319 (394)
163 4fs7_A Uncharacterized protein 75.4 0.93 3.2E-05 43.5 1.5 110 157-286 273-393 (394)
164 1pgv_A TMD-1, tropomodulin TMD 70.8 1.9 6.6E-05 36.9 2.2 126 310-442 30-168 (197)
165 1pgv_A TMD-1, tropomodulin TMD 67.8 0.22 7.4E-06 42.9 -4.4 19 203-221 92-110 (197)
166 4gt6_A Cell surface protein; l 67.6 3.2 0.00011 39.7 3.4 57 156-218 284-343 (394)
167 3rfe_A Platelet glycoprotein I 63.3 4.3 0.00015 32.0 2.7 35 161-195 32-68 (130)
168 4h09_A Hypothetical leucine ri 57.9 5.1 0.00017 37.9 2.7 76 157-242 260-341 (379)
169 3rfe_A Platelet glycoprotein I 47.9 12 0.00042 29.2 3.0 54 163-222 11-68 (130)
170 4h09_A Hypothetical leucine ri 40.4 17 0.00059 34.1 3.3 78 155-243 235-319 (379)
171 2lz0_A Uncharacterized protein 22.5 36 0.0012 25.2 1.7 36 179-219 16-53 (100)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=3e-21 Score=201.15 Aligned_cols=36 Identities=11% Similarity=0.352 Sum_probs=33.0
Q ss_pred CCCChHHHHHHhcCC-CchhhhhhhhhhhhHHHHhcc
Q 040527 26 SSLPDEILCHILSFL-PIKCAVQTCILSSRWKHLWTS 61 (468)
Q Consensus 26 s~LPd~vL~~Ils~L-~~~~~~r~s~vskrWr~lw~~ 61 (468)
+.||||++.+||+|| +++|++++++|||||++++..
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~ 50 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSE 50 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhc
Confidence 389999999999999 899999999999999988543
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=1.1e-21 Score=204.62 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=29.3
Q ss_pred CccccCCCChHHHHHHhcCCC-chhhhhhhhhhhhHHHH
Q 040527 21 KMDRISSLPDEILCHILSFLP-IKCAVQTCILSSRWKHL 58 (468)
Q Consensus 21 ~~d~~s~LPd~vL~~Ils~L~-~~~~~r~s~vskrWr~l 58 (468)
+.|+++.||||++.+||+||+ .+|++++++|||||+++
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 468999999999999999999 99999999999999987
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=8.9e-22 Score=190.31 Aligned_cols=192 Identities=15% Similarity=0.085 Sum_probs=109.4
Q ss_pred CccccCCCChHHHHHHhcCCCchhhhhhhhhhhhHHHHhcc---CceeEeecCcccccCCCCCCchhhhcHHHHHHHHHH
Q 040527 21 KMDRISSLPDEILCHILSFLPIKCAVQTCILSSRWKHLWTS---LPCLCFDDSLWFKDKRPGESTQDVLTRFANFVNKVL 97 (468)
Q Consensus 21 ~~d~~s~LPd~vL~~Ils~L~~~~~~r~s~vskrWr~lw~~---~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 97 (468)
+...+++||||++.+||+||+.+|+++++.|||+|+++... ...+++....+.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~------------------------ 60 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH------------------------ 60 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC------------------------
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC------------------------
Confidence 35678999999999999999999999999999999998532 222444333331
Q ss_pred hhCCCCceeEEeecCCCCCcCCCCCcHHHHHHHHHhcCceEEEEEEEecceeeecCCCccccCccceEEecccccCC--C
Q 040527 98 LFHSADINKFSVHCSEPNIYLTDLPPLKSWVSSAIERNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFK--I 175 (468)
Q Consensus 98 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~ 175 (468)
...+......+++.+++.... ....+..++.+++|++|+|++|.+.. .
T Consensus 61 ---------------------------~~~~~~~~~~~l~~L~l~~n~---l~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 110 (336)
T 2ast_B 61 ---------------------------PDVTGRLLSQGVIAFRCPRSF---MDQPLAEHFSPFRVQHMDLSNSVIEVSTL 110 (336)
T ss_dssp ---------------------------HHHHHHHHHTTCSEEECTTCE---ECSCCCSCCCCBCCCEEECTTCEECHHHH
T ss_pred ---------------------------HHHHHhhhhccceEEEcCCcc---ccccchhhccCCCCCEEEccCCCcCHHHH
Confidence 022222333456666554211 12233335567777777777776543 2
Q ss_pred CCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeee-ccCCCeeeEEEEcCcccEEEEeee-eecccCCc
Q 040527 176 PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHL-EDKHSVTNLNISSLTLKRLTLSLE-KVLFSNTK 252 (468)
Q Consensus 176 ~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~-~~~~~~~~~~i~~~~L~~L~l~~~-~~~~~~~~ 252 (468)
+.....+++|++|+|+ +.+.+. .. ..++.||+|++|+|.+|. ..+.++....-.+++|+.|.+++| .... ...
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~--~~-~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~ 186 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDP--IV-NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE-KHV 186 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHH--HH-HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH-HHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHH--HH-HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh-HHH
Confidence 2334567777777777 765432 23 345567777777777773 220001111123456777777666 3210 011
Q ss_pred eeEEEecC-CeeEEEEecc
Q 040527 253 HQVMIRAP-NLEHLCIYDD 270 (468)
Q Consensus 253 ~~i~~~~p-~L~~L~l~~~ 270 (468)
..+....| +|++|+++++
T Consensus 187 ~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 187 QVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp HHHHHHSCTTCCEEECCSC
T ss_pred HHHHHhcccCCCEEEeCCC
Confidence 11222345 6667666665
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.32 E-value=9.8e-13 Score=126.26 Aligned_cols=202 Identities=16% Similarity=0.163 Sum_probs=127.1
Q ss_pred HHHHHhcCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhc
Q 040527 128 VSSAIERNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFT 206 (468)
Q Consensus 128 l~~~~~~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~ 206 (468)
+......+++.|++.... ...+|..++.+++|++|+|++|.+...|..+..+++|++|+|+ +.+. .+. .-+.
T Consensus 75 l~~~~~~~l~~L~L~~n~---l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~---~lp-~~l~ 147 (328)
T 4fcg_A 75 LEDATQPGRVALELRSVP---LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR---ALP-ASIA 147 (328)
T ss_dssp HHHHTSTTCCEEEEESSC---CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC---CCC-GGGG
T ss_pred HhcccccceeEEEccCCC---chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc---cCc-HHHh
Confidence 334444788889887322 3488998999999999999999998777778899999999999 8876 255 6688
Q ss_pred cCCccceEEEeeeeccCCCee-eEE--------EEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEEE
Q 040527 207 ICPVLEDLLIEIHLEDKHSVT-NLN--------ISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYMV 277 (468)
Q Consensus 207 ~cp~Le~L~L~~c~~~~~~~~-~~~--------i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~~ 277 (468)
+++.|+.|+|.+|+..+ .+. .+. -..++|+.|.+++|... .........++|++|+++++....+
T Consensus 148 ~l~~L~~L~L~~n~~~~-~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~N~l~~l-- 221 (328)
T 4fcg_A 148 SLNRLRELSIRACPELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR---SLPASIANLQNLKSLKIRNSPLSAL-- 221 (328)
T ss_dssp GCTTCCEEEEEEETTCC-CCCSCSEEEC-CCCEEESTTCCEEEEEEECCC---CCCGGGGGCTTCCEEEEESSCCCCC--
T ss_pred cCcCCCEEECCCCCCcc-ccChhHhhccchhhhccCCCCCEEECcCCCcC---cchHhhcCCCCCCEEEccCCCCCcC--
Confidence 99999999999997331 111 111 12566777777776532 1111112345666666666533211
Q ss_pred ecCCCeeEEEEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEE
Q 040527 278 HELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEI 357 (468)
Q Consensus 278 ~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~ 357 (468)
| ..+..+++|+.|+++++.. .......+..+++|+.|+|+.
T Consensus 222 -----------------------~-------------~~l~~l~~L~~L~Ls~n~~---~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 222 -----------------------G-------------PAIHHLPKLEELDLRGCTA---LRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp -----------------------C-------------GGGGGCTTCCEEECTTCTT---CCBCCCCTTCCCCCCEEECTT
T ss_pred -----------------------c-------------hhhccCCCCCEEECcCCcc---hhhhHHHhcCCCCCCEEECCC
Confidence 0 0145566777777776554 211112344566677777765
Q ss_pred ecCCchhHHHHHhcCCCCceEEEee
Q 040527 358 EESGFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 358 ~~~~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
+.. ...++.-+..+++|+.|+|++
T Consensus 263 n~~-~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 263 CSN-LLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp CTT-CCBCCTTGGGCTTCCEEECTT
T ss_pred CCc-hhhcchhhhcCCCCCEEeCCC
Confidence 432 122222356677777777765
No 5
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.27 E-value=5.4e-11 Score=115.28 Aligned_cols=255 Identities=15% Similarity=0.126 Sum_probs=166.4
Q ss_pred cCceEEEEEEEecceeeecCC-CccccCccceEEecccccCCCC-CCcccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIELPD-NICTCKTLEMLKLKLDFDFKIP-TSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
.++++|++.. .. ...+|. .+..+++|++|+|++|.+...+ ..+.++++|++|+|+ +.+.+. .. ..+.++++
T Consensus 52 ~~L~~L~l~~--n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~-~~~~~l~~ 125 (353)
T 2z80_A 52 EAVKSLDLSN--NR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL--SS-SWFKPLSS 125 (353)
T ss_dssp TTCCEEECTT--SC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC--CH-HHHTTCTT
T ss_pred ccCcEEECCC--Cc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC--CH-hHhCCCcc
Confidence 4788888762 21 334554 5667899999999999887763 347789999999999 877642 23 55888999
Q ss_pred cceEEEeeeeccCCCeee--EEEEcCcccEEEEeeeeecccCCceeEE----EecCCeeEEEEeccccceE---EEecCC
Q 040527 211 LEDLLIEIHLEDKHSVTN--LNISSLTLKRLTLSLEKVLFSNTKHQVM----IRAPNLEHLCIYDDTLVSY---MVHELH 281 (468)
Q Consensus 211 Le~L~L~~c~~~~~~~~~--~~i~~~~L~~L~l~~~~~~~~~~~~~i~----~~~p~L~~L~l~~~~~~~~---~~~~~~ 281 (468)
|++|++.+|... .+.. ..-..++|+.|.+++|.. ...+. -..++|++|+++++..... .+.+++
T Consensus 126 L~~L~L~~n~l~--~l~~~~~~~~l~~L~~L~l~~n~~-----~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 198 (353)
T 2z80_A 126 LTFLNLLGNPYK--TLGETSLFSHLTKLQILRVGNMDT-----FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198 (353)
T ss_dssp CSEEECTTCCCS--SSCSSCSCTTCTTCCEEEEEESSS-----CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred CCEEECCCCCCc--ccCchhhhccCCCCcEEECCCCcc-----ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc
Confidence 999999998755 4333 111356899999999731 11111 1357899999998865543 345677
Q ss_pred CeeEEEEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEeccccccccccccc---CCCCCCCcceEEEEEe
Q 040527 282 SLTEVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFED---YIPTFPYLTYLKVEIE 358 (468)
Q Consensus 282 ~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~---~~~~~~~L~~L~l~~~ 358 (468)
+|+.+++..... ......++..+++++.|+++.+.+ ...... .......++.+++...
T Consensus 199 ~L~~L~l~~n~l----------------~~~~~~~~~~~~~L~~L~L~~n~l---~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 199 NVSHLILHMKQH----------------ILLLEIFVDVTSSVECLELRDTDL---DTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp EEEEEEEECSCS----------------TTHHHHHHHHTTTEEEEEEESCBC---TTCCCC------CCCCCCEEEEESC
T ss_pred cCCeecCCCCcc----------------ccchhhhhhhcccccEEECCCCcc---ccccccccccccccchhhccccccc
Confidence 788877654321 222334566789999999999988 333211 2335667888888766
Q ss_pred cCC---chhHHHHHhcCCCCceEEEeeeecCCCCCCCCCCccCcc---cccceeEEEEE--eecCchHHHHHHHHHHhc
Q 040527 359 ESG---FRLLPIILRSLPNLGAMEIDFLIVGDNLRWTEPQCVPNC---LLLHVKKIEIC--GFEGLKHELELVKYLLKN 429 (468)
Q Consensus 359 ~~~---~~~l~~ll~~~p~L~~L~l~~~~~~~~~~w~~~~~~~~~---~~~~L~~v~i~--~~~g~~~e~~~~~~ll~~ 429 (468)
... ...++..+..+++|+.|+++++ ....++.. -..+|+++.+. .+.|.-..+......+++
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N---------~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~ 329 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRN---------QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 329 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSS---------CCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCC---------CCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence 542 2456777899999999999872 22222221 23678888886 344544445555444444
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.21 E-value=6.9e-12 Score=121.23 Aligned_cols=253 Identities=11% Similarity=0.071 Sum_probs=120.6
Q ss_pred ccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcC
Q 040527 156 ICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSL 234 (468)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~ 234 (468)
+..+++|++|++++|.+...++ +..+++|++|+|+ +.+.+ +. .+.++++|++|++.+|... ++.. ....+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~---~~--~~~~l~~L~~L~l~~n~i~--~~~~-~~~l~ 132 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD---IS--ALQNLTNLRELYLNEDNIS--DISP-LANLT 132 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC---CG--GGTTCTTCSEEECTTSCCC--CCGG-GTTCT
T ss_pred hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC---ch--HHcCCCcCCEEECcCCccc--Cchh-hccCC
Confidence 3445566666666665555422 5555666666666 54433 12 1445566666666655533 2222 11234
Q ss_pred cccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEE-EecCCCeeEEEEeeeeecc--cccCcCCCCCCCCchh
Q 040527 235 TLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYM-VHELHSLTEVHFDIEFDKY--FVEDLQEFDPPNIPAD 311 (468)
Q Consensus 235 ~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~-~~~~~~L~~~~l~~~~~~~--~~~~~~~l~~~~~~~~ 311 (468)
+|+.|.+++|.... .... ....++|++|+++++...... +.++++|+.+++....... .+..++.|+.+.+...
T Consensus 133 ~L~~L~l~~n~~~~--~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 133 KMYSLNLGANHNLS--DLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN 209 (347)
T ss_dssp TCCEEECTTCTTCC--CCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSS
T ss_pred ceeEEECCCCCCcc--cccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccC
Confidence 45555555553111 0000 113345555555554332211 3444555555443221100 1122222222221000
Q ss_pred hHH--HHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEeeeecCCCC
Q 040527 312 RML--QLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDFLIVGDNL 389 (468)
Q Consensus 312 ~~~--~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~ 389 (468)
.+. ..+..+++++.|+++++.+ ..+. .+..+++|+.|+++.+.... + ..+..+|+|+.|++.++
T Consensus 210 ~l~~~~~~~~~~~L~~L~l~~n~l---~~~~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n------ 275 (347)
T 4fmz_A 210 QITDITPVANMTRLNSLKIGNNKI---TDLS--PLANLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSN------ 275 (347)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCC---CCCG--GGTTCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSS------
T ss_pred CCCCCchhhcCCcCCEEEccCCcc---CCCc--chhcCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCC------
Confidence 000 0056777788888877766 2221 15567778888777654322 1 23567788888888762
Q ss_pred CCCCCCccC-cccccceeEEEEEeecCchHHHHHHHHHHhcCcccceEEEEec
Q 040527 390 RWTEPQCVP-NCLLLHVKKIEICGFEGLKHELELVKYLLKNSEVLDKMIIRSM 441 (468)
Q Consensus 390 ~w~~~~~~~-~~~~~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~i~~~ 441 (468)
....++ -....+|+.+.+.+..-... ....+.+.+.|+.+.+...
T Consensus 276 ---~l~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 276 ---QISDISVLNNLSQLNSLFLNNNQLGNE----DMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp ---CCCCCGGGGGCTTCSEEECCSSCCCGG----GHHHHHTCTTCSEEECCSS
T ss_pred ---ccCCChhhcCCCCCCEEECcCCcCCCc----ChhHhhccccCCEEEccCC
Confidence 111111 11235777777765433221 1133556788888887663
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.20 E-value=1.6e-11 Score=120.76 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=41.9
Q ss_pred cCceEEEEEEEecceeeecCC-CccccCccceEEecccccCCCCCC-cccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIELPD-NICTCKTLEMLKLKLDFDFKIPTS-RICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
.+++.|++... . ...++. .+..+++|++|+|++|.+...++. +..+++|++|+|+ +.+.+- -. .++.++++
T Consensus 69 ~~L~~L~L~~n--~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l--~~-~~~~~l~~ 142 (390)
T 3o6n_A 69 RQVELLNLNDL--Q-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL--PR-GIFHNTPK 142 (390)
T ss_dssp CCCSEEECTTS--C-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CT-TTTTTCTT
T ss_pred ccCcEEECCCC--c-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC--CH-HHhcCCCC
Confidence 45666665421 1 222332 344456666666666665554332 4556666666666 555421 12 34555666
Q ss_pred cceEEEeeee
Q 040527 211 LEDLLIEIHL 220 (468)
Q Consensus 211 Le~L~L~~c~ 220 (468)
|++|++.+|.
T Consensus 143 L~~L~L~~n~ 152 (390)
T 3o6n_A 143 LTTLSMSNNN 152 (390)
T ss_dssp CCEEECCSSC
T ss_pred CcEEECCCCc
Confidence 6666666654
No 8
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.16 E-value=3.1e-11 Score=121.62 Aligned_cols=74 Identities=15% Similarity=0.101 Sum_probs=49.3
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLE 212 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le 212 (468)
.++++|.+.... ...++. +..+++|++|+|++|.+...++ ...+++|++|+|+ +.+.+.. . +.+++.|+
T Consensus 90 ~~L~~L~l~~n~---l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~----~-~~~l~~L~ 159 (466)
T 1o6v_A 90 TKLVDILMNNNQ---IADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS----A-LSGLTSLQ 159 (466)
T ss_dssp TTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCG----G-GTTCTTCS
T ss_pred ccCCEEECCCCc---cccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCCh----h-hccCCccc
Confidence 577777776321 233444 6677888888888888877633 6788888888888 8776532 2 44566666
Q ss_pred eEEEe
Q 040527 213 DLLIE 217 (468)
Q Consensus 213 ~L~L~ 217 (468)
.|.+.
T Consensus 160 ~L~l~ 164 (466)
T 1o6v_A 160 QLSFG 164 (466)
T ss_dssp EEEEE
T ss_pred EeecC
Confidence 66664
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.16 E-value=9.9e-12 Score=125.63 Aligned_cols=236 Identities=15% Similarity=0.052 Sum_probs=122.4
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCC-cccCCcccEEEEE-EEecCcccchhhhhccCCcc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTS-RICFPSLKCLHAE-MYYPHSTCITEKLFTICPVL 211 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~L 211 (468)
.++++|++.. ..-....|..+..+++|++|+|++|.+...++. +.++++|++|+|+ +.+... .. ..+.++++|
T Consensus 56 ~~L~~L~L~~--n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~-~~~~~l~~L 130 (477)
T 2id5_A 56 PHLEELELNE--NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL--LD-YMFQDLYNL 130 (477)
T ss_dssp TTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE--CT-TTTTTCTTC
T ss_pred CCCCEEECCC--CccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC--Ch-hHccccccC
Confidence 4566666642 111122244555667777777777776665433 4567777777777 655432 23 446667777
Q ss_pred ceEEEeeeeccCCCeeeEEE-EcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceE---EEecCCCeeEEE
Q 040527 212 EDLLIEIHLEDKHSVTNLNI-SSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY---MVHELHSLTEVH 287 (468)
Q Consensus 212 e~L~L~~c~~~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~ 287 (468)
+.|+|.+|... ++..-.+ ..++|+.|.+.+|.... .........++|+.|++.++..... .+.++++|+.++
T Consensus 131 ~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 131 KSLEVGDNDLV--YISHRAFSGLNSLEQLTLEKCNLTS--IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp CEEEECCTTCC--EECTTSSTTCTTCCEEEEESCCCSS--CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred CEEECCCCccc--eeChhhccCCCCCCEEECCCCcCcc--cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence 77777776432 1111011 23567777777764211 0000011346677777776544332 345566666666
Q ss_pred Eeeeeeccc----ccCcCCCCCCCCc----hhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEec
Q 040527 288 FDIEFDKYF----VEDLQEFDPPNIP----ADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEE 359 (468)
Q Consensus 288 l~~~~~~~~----~~~~~~l~~~~~~----~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~ 359 (468)
+........ ....+.|+.+.+. .......+..+++|+.|+++.+.+ ..+....+..+++|+.|+|+.+.
T Consensus 207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI---STIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC---CEECTTSCTTCTTCCEEECCSSC
T ss_pred CCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC---CccChhhccccccCCEEECCCCc
Confidence 653211100 0011122222110 111123456777888888887776 44433345667778888776543
Q ss_pred CCchhHHHHHhcCCCCceEEEee
Q 040527 360 SGFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 360 ~~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
... ..+..+..+++|+.|+|++
T Consensus 284 l~~-~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 284 LAV-VEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp CSE-ECTTTBTTCTTCCEEECCS
T ss_pred cce-ECHHHhcCcccCCEEECCC
Confidence 211 1123456778888888876
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.15 E-value=2.1e-11 Score=116.92 Aligned_cols=220 Identities=14% Similarity=0.085 Sum_probs=141.4
Q ss_pred CccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcccE
Q 040527 160 KTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLKR 238 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~~ 238 (468)
++++.|+|+++.+..+|+....+++|++|+|+ +.+.. +. ..+.++++|+.|+|.+|... .+....-..++|+.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~---lp-~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME---LP-DTMQQFAGLETLTLARNPLR--ALPASIASLNRLRE 154 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC---CC-SCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccc---hh-HHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCE
Confidence 78999999999999887778889999999999 88762 55 56788999999999999754 32211112467999
Q ss_pred EEEeeeeecccCCceeE-------EEecCCeeEEEEeccccceEEEecCCCeeEEEEeeeeecccccCcCCCCCCCCchh
Q 040527 239 LTLSLEKVLFSNTKHQV-------MIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPAD 311 (468)
Q Consensus 239 L~l~~~~~~~~~~~~~i-------~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 311 (468)
|.+++|........... .-..++|++|+++++.. ...|
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-------------------------~~lp---------- 199 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-------------------------RSLP---------- 199 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-------------------------CCCC----------
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-------------------------Ccch----------
Confidence 99998753211000000 11245555555555422 1111
Q ss_pred hHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEeeeecCCCCCC
Q 040527 312 RMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDFLIVGDNLRW 391 (468)
Q Consensus 312 ~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~w 391 (468)
..+..+++|+.|+++.+.+ ..+ ...+..+++|+.|+++.+... ..++..+..+++|+.|+|.++..
T Consensus 200 ---~~l~~l~~L~~L~L~~N~l---~~l-~~~l~~l~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~~------ 265 (328)
T 4fcg_A 200 ---ASIANLQNLKSLKIRNSPL---SAL-GPAIHHLPKLEELDLRGCTAL-RNYPPIFGGRAPLKRLILKDCSN------ 265 (328)
T ss_dssp ---GGGGGCTTCCEEEEESSCC---CCC-CGGGGGCTTCCEEECTTCTTC-CBCCCCTTCCCCCCEEECTTCTT------
T ss_pred ---HhhcCCCCCCEEEccCCCC---CcC-chhhccCCCCCEEECcCCcch-hhhHHHhcCCCCCCEEECCCCCc------
Confidence 1256789999999999988 433 123567889999999865431 22334567899999999986211
Q ss_pred CCCCccCcc--cccceeEEEEEeecCchHHHHHHHHHHhcCcccceEEEEe
Q 040527 392 TEPQCVPNC--LLLHVKKIEICGFEGLKHELELVKYLLKNSEVLDKMIIRS 440 (468)
Q Consensus 392 ~~~~~~~~~--~~~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~i~~ 440 (468)
...+|.. -..+|+.+.+.+..-.. -+.--+.+.+.|+.+.+..
T Consensus 266 --~~~~p~~~~~l~~L~~L~L~~n~~~~----~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 266 --LLTLPLDIHRLTQLEKLDLRGCVNLS----RLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp --CCBCCTTGGGCTTCCEEECTTCTTCC----CCCGGGGGSCTTCEEECCG
T ss_pred --hhhcchhhhcCCCCCEEeCCCCCchh----hccHHHhhccCceEEeCCH
Confidence 1112221 23678888886532211 1122367778888876653
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.14 E-value=2.1e-11 Score=126.75 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=36.4
Q ss_pred HhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEee
Q 040527 316 LLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 316 ~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
.+..+++|+.|+++.+.+ ..+ ......+++|+.|+|+.+... .++.-+..+|+|+.|+|.+
T Consensus 273 ~~~~l~~L~~L~Ls~N~l---~~l-~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRL---VAL-NLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDH 333 (597)
T ss_dssp GGTTCSSCCEEECTTSCC---CEE-ECSSSCCTTCCEEECCSSCCC--CCGGGHHHHTTCSEEECCS
T ss_pred HhcCccCCCEEECCCCCC---CCC-CcccccCCCCcEEECCCCCCC--ccCcccccCCCCCEEECCC
Confidence 345667777777777766 322 112345677888887765432 2332345667788888776
No 12
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.14 E-value=7.2e-12 Score=130.14 Aligned_cols=264 Identities=15% Similarity=0.105 Sum_probs=140.9
Q ss_pred cccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCc
Q 040527 157 CTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLT 235 (468)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~ 235 (468)
..+++|+.|.+.++.....+.....+++|++|+|+ +.+.+ ..+. .++.+||+|+.|++.++..+. ++..+.-.+++
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~-~~~~-~~~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~ 343 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET-EDHC-TLIQKCPNLEVLETRNVIGDR-GLEVLAQYCKQ 343 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH-HHHH-HHHTTCTTCCEEEEEGGGHHH-HHHHHHHHCTT
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH-HHHH-HHHHhCcCCCEEeccCccCHH-HHHHHHHhCCC
Confidence 34455555555544333323334567778888887 76443 3355 566778888888777442110 22222224577
Q ss_pred ccEEEEee----------eeecccCCceeEEEecCCeeEEEEeccccceE---EE-ecCCCeeEEEEeeeeecccccCcC
Q 040527 236 LKRLTLSL----------EKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY---MV-HELHSLTEVHFDIEFDKYFVEDLQ 301 (468)
Q Consensus 236 L~~L~l~~----------~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~---~~-~~~~~L~~~~l~~~~~~~~~~~~~ 301 (468)
|+.|.+.+ |...++.....+...+|+|++|.++....... .+ .++++|+.+++........+.+.|
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 88888884 43221111222223468888888855433211 12 237778877775322111122222
Q ss_pred CCCCCCCchhhHHHHhhhcCceeEEEEeccc--ccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEE
Q 040527 302 EFDPPNIPADRMLQLLKGITNTRFLSLSAGI--ISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAME 379 (468)
Q Consensus 302 ~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~--~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~ 379 (468)
. +..+..++.++++|+.|+++.+. ..+ ..+ ......+++|+.|+|+.+.....++..++++||+|++|+
T Consensus 424 ~-------~~~~~~~~~~~~~L~~L~L~~~~~~l~~-~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 424 L-------DNGVRSLLIGCKKLRRFAFYLRQGGLTD-LGL-SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494 (592)
T ss_dssp C-------HHHHHHHHHHCTTCCEEEEECCGGGCCH-HHH-HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred H-------HHHHHHHHHhCCCCCEEEEecCCCCccH-HHH-HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence 1 34677778888888888886532 200 000 001234678888888766555567777888888888888
Q ss_pred EeeeecCCCCCCCCCCccCcccccceeEEEEEeecCchHHHHHHHHHHhcCcccceEEEEe
Q 040527 380 IDFLIVGDNLRWTEPQCVPNCLLLHVKKIEICGFEGLKHELELVKYLLKNSEVLDKMIIRS 440 (468)
Q Consensus 380 l~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~i~~ 440 (468)
|+++...+. ..... .....+|+.+.+.++.-+... ++.+.+..|.|....|..
T Consensus 495 l~~n~l~~~----~~~~~-~~~l~~L~~L~ls~n~it~~~---~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 495 MRGCCFSER----AIAAA-VTKLPSLRYLWVQGYRASMTG---QDLMQMARPYWNIELIPS 547 (592)
T ss_dssp EESCCCBHH----HHHHH-HHHCSSCCEEEEESCBCCTTC---TTGGGGCCTTEEEEEECC
T ss_pred ccCCCCcHH----HHHHH-HHhcCccCeeECcCCcCCHHH---HHHHHHhCCCcEEEEecC
Confidence 886221100 00000 001357888888766543221 334556666665555543
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.14 E-value=1.3e-11 Score=124.38 Aligned_cols=267 Identities=14% Similarity=0.111 Sum_probs=134.8
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLE 212 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le 212 (468)
.+++.|++.... ...+|. +..+++|++|++++|.+...++ ...+++|++|+|+ +.+.+ +. . +.++++|+
T Consensus 68 ~~L~~L~Ls~n~---l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~---~~-~-~~~l~~L~ 137 (466)
T 1o6v_A 68 NNLTQINFSNNQ---LTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITD---ID-P-LKNLTNLN 137 (466)
T ss_dssp TTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC---CG-G-GTTCTTCS
T ss_pred cCCCEEECCCCc---cCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCC---Ch-H-HcCCCCCC
Confidence 466666665221 223333 5556677777777776665533 5667777777777 65543 22 2 55677777
Q ss_pred eEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceE-EEecCCCeeEEEEeee
Q 040527 213 DLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY-MVHELHSLTEVHFDIE 291 (468)
Q Consensus 213 ~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~ 291 (468)
+|++.+|... ++..+ -..++|+.|.+.++. ..... ....++|+.|+++++..... .+.++++|+.+++...
T Consensus 138 ~L~l~~n~l~--~~~~~-~~l~~L~~L~l~~~~----~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 138 RLELSSNTIS--DISAL-SGLTSLQQLSFGNQV----TDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 209 (466)
T ss_dssp EEEEEEEEEC--CCGGG-TTCTTCSEEEEEESC----CCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred EEECCCCccC--CChhh-ccCCcccEeecCCcc----cCchh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCC
Confidence 7777777644 32221 123567777665432 11111 12346777777777654332 2455677777766543
Q ss_pred eecc--cccCcCCCCCCCCchhhHH--HHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHH
Q 040527 292 FDKY--FVEDLQEFDPPNIPADRML--QLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPI 367 (468)
Q Consensus 292 ~~~~--~~~~~~~l~~~~~~~~~~~--~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ 367 (468)
.... .++.++.|+.+.+....+. ..+..+++++.|+++.+.+ ... ..+..+++|+.|+++.+.... +..
T Consensus 210 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l---~~~--~~~~~l~~L~~L~l~~n~l~~--~~~ 282 (466)
T 1o6v_A 210 QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI---SNL--APLSGLTKLTELKLGANQISN--ISP 282 (466)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC---CCC--GGGTTCTTCSEEECCSSCCCC--CGG
T ss_pred cccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcc---ccc--hhhhcCCCCCEEECCCCccCc--ccc
Confidence 2111 1223344443333111000 1234555666666665554 211 113455666666665543211 111
Q ss_pred HHhcCCCCceEEEeeeecCCCCCCCCCCccCcccccceeEEEEEeecCchHHHHHHHHHHhcCcccceEEEEe
Q 040527 368 ILRSLPNLGAMEIDFLIVGDNLRWTEPQCVPNCLLLHVKKIEICGFEGLKHELELVKYLLKNSEVLDKMIIRS 440 (468)
Q Consensus 368 ll~~~p~L~~L~l~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~i~~ 440 (468)
+..+++|+.|++.++... .... -....+|+.+.+.+..-.... . +...+.|+.+.+..
T Consensus 283 -~~~l~~L~~L~L~~n~l~------~~~~--~~~l~~L~~L~L~~n~l~~~~----~--~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 283 -LAGLTALTNLELNENQLE------DISP--ISNLKNLTYLTLYFNNISDIS----P--VSSLTKLQRLFFYN 340 (466)
T ss_dssp -GTTCTTCSEEECCSSCCS------CCGG--GGGCTTCSEEECCSSCCSCCG----G--GGGCTTCCEEECCS
T ss_pred -ccCCCccCeEEcCCCccc------Cchh--hcCCCCCCEEECcCCcCCCch----h--hccCccCCEeECCC
Confidence 456667777766651111 1111 112357888877643222110 1 56788888888865
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.14 E-value=3.6e-12 Score=123.26 Aligned_cols=58 Identities=17% Similarity=0.301 Sum_probs=36.5
Q ss_pred hhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEee
Q 040527 317 LKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 317 l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
+..+++++.|+++.+.+.+ + +.+..+++|+.|+++.+.... + ..+..+|+|+.|++++
T Consensus 239 ~~~l~~L~~L~l~~n~l~~---~--~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD---I--NAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNN 296 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC---C--GGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCS
T ss_pred hhcCCCCCEEECCCCccCC---C--hhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcC
Confidence 5677778888887776622 2 234566777777776653321 1 2356777777777775
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.14 E-value=1.7e-12 Score=127.77 Aligned_cols=146 Identities=16% Similarity=0.131 Sum_probs=102.6
Q ss_pred cCceEEEEEEEecceeeecCCCcc-ccCccceEEecccccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNIC-TCKTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
.+++.+++... ....+|..++ .+++|++|+|+++.+...++ .+..+++|++|+|+ +.+.+. .. ..+.+++.
T Consensus 45 ~~l~~l~l~~~---~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~~~l~~ 118 (390)
T 3o6n_A 45 NNQKIVTFKNS---TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL--PP-HVFQNVPL 118 (390)
T ss_dssp CCCSEEEEESC---EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC--CT-TTTTTCTT
T ss_pred CCceEEEecCC---chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC--CH-HHhcCCCC
Confidence 58888888732 2456777654 57999999999999887644 57889999999999 887643 23 56889999
Q ss_pred cceEEEeeeeccCCCeeeEE-EEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEEEecCCCeeEEEEe
Q 040527 211 LEDLLIEIHLEDKHSVTNLN-ISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFD 289 (468)
Q Consensus 211 Le~L~L~~c~~~~~~~~~~~-i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~ 289 (468)
|+.|+|.+|... .+..-. -..++|+.|.+++|...... .......++|++|+++++......+..+++|+.+++.
T Consensus 119 L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 119 LTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 194 (390)
T ss_dssp CCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECC
T ss_pred CCEEECCCCccC--cCCHHHhcCCCCCcEEECCCCccCccC--hhhccCCCCCCEEECCCCcCCccccccccccceeecc
Confidence 999999999754 322211 12468999999998632110 0011235889999998876665556666777666554
No 16
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.10 E-value=2.1e-11 Score=115.73 Aligned_cols=247 Identities=13% Similarity=0.087 Sum_probs=153.1
Q ss_pred eeecCCCccccCccceEEecccccCCCCCC-cccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCe
Q 040527 149 LIELPDNICTCKTLEMLKLKLDFDFKIPTS-RICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSV 226 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~ 226 (468)
...+|..+. ++|++|+|+++.+...++. +..+++|++|+|+ +.+...+... ..+.+++.|+.|+|.+|... .+
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~i~--~l 93 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS-QSDFGTTSLKYLDLSFNGVI--TM 93 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEE-HHHHSCSCCCEEECCSCSEE--EE
T ss_pred cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcc-cccccccccCEEECCCCccc--cC
Confidence 445665443 6899999999998877554 5789999999999 8776443333 44667999999999998654 33
Q ss_pred eeEEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceE---EEecCCCeeEEEEeeeeecccccCcCCC
Q 040527 227 TNLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY---MVHELHSLTEVHFDIEFDKYFVEDLQEF 303 (468)
Q Consensus 227 ~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~l 303 (468)
.......++|+.|.++++....... .......++|++|+++++..... .+.++++|+.+++.......
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------- 164 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-------- 164 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG--------
T ss_pred hhhcCCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc--------
Confidence 3323345789999999886432111 01122458899999988754322 24566778877765432110
Q ss_pred CCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEeee
Q 040527 304 DPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDFL 383 (468)
Q Consensus 304 ~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 383 (468)
......+..+++++.|+++.+.+ ..+....+..+++|+.|+++.+..... ....+..+++|+.|+++++
T Consensus 165 -------~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 165 -------NFLPDIFTELRNLTFLDLSQCQL---EQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp -------GEECSCCTTCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTSCCSBC-CSGGGTTCTTCCEEECTTS
T ss_pred -------ccchhHHhhCcCCCEEECCCCCc---CCcCHHHhcCCCCCCEEECCCCccCcc-ChhhccCcccCCEeECCCC
Confidence 01112346778999999999887 444333566788999999976543210 0112578899999999872
Q ss_pred e-cCCCCCCCCCCccCcccccceeEEEEE--eecCchHHHHHHHHH
Q 040527 384 I-VGDNLRWTEPQCVPNCLLLHVKKIEIC--GFEGLKHELELVKYL 426 (468)
Q Consensus 384 ~-~~~~~~w~~~~~~~~~~~~~L~~v~i~--~~~g~~~e~~~~~~l 426 (468)
. ...... .. .....+|+.+.+. .+.+......+..++
T Consensus 234 ~l~~~~~~--~~----~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l 273 (306)
T 2z66_A 234 HIMTSKKQ--EL----QHFPSSLAFLNLTQNDFACTCEHQSFLQWI 273 (306)
T ss_dssp CCCBCSSS--SC----CCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred CCcccCHH--HH----HhhhccCCEEEccCCCeecccChHHHHHHH
Confidence 1 111100 11 1122478888876 344443334455553
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.10 E-value=7.6e-12 Score=126.48 Aligned_cols=148 Identities=18% Similarity=0.145 Sum_probs=99.8
Q ss_pred cCceEEEEEEEecceeeec-CCCccccCccceEEecccccCCC-CCCcccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIEL-PDNICTCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
..++.|++.. .. ...+ |..+..+++|++|+|++|.+... |..+.++++|++|+|+ +.+... -. ..+.++++
T Consensus 32 ~~l~~L~L~~--n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGK--NR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI--PL-GVFTGLSN 105 (477)
T ss_dssp TTCSEEECCS--SC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC--CT-TSSTTCTT
T ss_pred CCCcEEECCC--Cc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc--Cc-ccccCCCC
Confidence 4677777763 22 2334 44566789999999999988766 4557789999999999 877642 23 56788999
Q ss_pred cceEEEeeeeccCCCeeeEE-EEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEE---EecCCCeeEE
Q 040527 211 LEDLLIEIHLEDKHSVTNLN-ISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYM---VHELHSLTEV 286 (468)
Q Consensus 211 Le~L~L~~c~~~~~~~~~~~-i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~ 286 (468)
|+.|+|.+|... .+.... -..++|+.|.+.++....... ......++|++|+++++...... +.++++|+.+
T Consensus 106 L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 106 LTKLDISENKIV--ILLDYMFQDLYNLKSLEVGDNDLVYISH--RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp CCEEECTTSCCC--EECTTTTTTCTTCCEEEECCTTCCEECT--TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred CCEEECCCCccc--cCChhHccccccCCEEECCCCccceeCh--hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence 999999998644 211101 124679999998875221000 00114588999999988655443 5678888888
Q ss_pred EEeee
Q 040527 287 HFDIE 291 (468)
Q Consensus 287 ~l~~~ 291 (468)
++...
T Consensus 182 ~l~~n 186 (477)
T 2id5_A 182 RLRHL 186 (477)
T ss_dssp EEESC
T ss_pred eCCCC
Confidence 87653
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.09 E-value=1.5e-10 Score=112.14 Aligned_cols=183 Identities=15% Similarity=0.100 Sum_probs=112.3
Q ss_pred eeecCCCccccCccceEEecccccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCe
Q 040527 149 LIELPDNICTCKTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSV 226 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~ 226 (468)
...+|..++ ++|++|+|+++.+...++ .+..+++|++|+|+ +.+.+. .. ..+.++++|++|++.+|... .+
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~~~l~~L~~L~Ls~n~l~--~~ 115 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI--EE-DSFSSLGSLEHLDLSYNYLS--NL 115 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE--CT-TTTTTCTTCCEEECCSSCCS--SC
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc--CH-hhcCCCCCCCEEECCCCcCC--cC
Confidence 445666544 589999999998877644 47789999999998 776532 23 55778899999999998754 32
Q ss_pred eeEEE-EcCcccEEEEeeeeecccCCcee--EEEecCCeeEEEEeccc-cceEEEecCCCeeEEEEeeeeecccccCcCC
Q 040527 227 TNLNI-SSLTLKRLTLSLEKVLFSNTKHQ--VMIRAPNLEHLCIYDDT-LVSYMVHELHSLTEVHFDIEFDKYFVEDLQE 302 (468)
Q Consensus 227 ~~~~i-~~~~L~~L~l~~~~~~~~~~~~~--i~~~~p~L~~L~l~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~ 302 (468)
..-.+ ..++|+.|.++++... .... ..-..++|++|+++++. .... +
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~---~l~~~~~~~~l~~L~~L~l~~n~~~~~~-------------------------~- 166 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYK---TLGETSLFSHLTKLQILRVGNMDTFTKI-------------------------Q- 166 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCS---SSCSSCSCTTCTTCCEEEEEESSSCCEE-------------------------C-
T ss_pred CHhHhCCCccCCEEECCCCCCc---ccCchhhhccCCCCcEEECCCCcccccc-------------------------C-
Confidence 22111 2457888888776532 1111 11235677777776652 1111 0
Q ss_pred CCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEee
Q 040527 303 FDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 303 l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
...+..+++++.|+++.+.+ .......+..+++|++|+++.+... ..-..++..+++|+.|++++
T Consensus 167 -----------~~~~~~l~~L~~L~l~~n~l---~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 167 -----------RKDFAGLTFLEELEIDASDL---QSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRD 231 (353)
T ss_dssp -----------TTTTTTCCEEEEEEEEETTC---CEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEES
T ss_pred -----------HHHccCCCCCCEEECCCCCc---CccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCC
Confidence 01234567777888877766 3332234556677777777665431 11233455678888888876
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.07 E-value=2.5e-12 Score=134.00 Aligned_cols=216 Identities=15% Similarity=0.124 Sum_probs=123.3
Q ss_pred ccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeE-EEEc
Q 040527 156 ICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNL-NISS 233 (468)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~-~i~~ 233 (468)
+..+++|++|+|++|.+...|.....+++|++|+|+ +.+.+. .. ..+.++|.|+.|++.+|.... .+..- .-..
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~--~~-~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l 349 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL--CQ-ISASNFPSLTHLSIKGNTKRL-ELGTGCLENL 349 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG--GG-GCGGGCTTCSEEECCSCSSCC-BCCSSTTTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC--ch-hhhhccCcCCEEECCCCCccc-ccchhhhhcc
Confidence 445688888888888887776667788888888888 776542 23 457778888888888875320 00000 0124
Q ss_pred CcccEEEEeeeeecccCCceeEE------EecCCeeEEEEeccccceE---EEecCCCeeEEEEeeeeecc-----cccC
Q 040527 234 LTLKRLTLSLEKVLFSNTKHQVM------IRAPNLEHLCIYDDTLVSY---MVHELHSLTEVHFDIEFDKY-----FVED 299 (468)
Q Consensus 234 ~~L~~L~l~~~~~~~~~~~~~i~------~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~-----~~~~ 299 (468)
++|+.|.+++|.. ..+. ...++|++|+++++..... .+.++++|+.+++....... .+..
T Consensus 350 ~~L~~L~l~~n~l------~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 350 ENLRELDLSHDDI------ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp TTCCEEECCSSCC------CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred CcCCEEECCCCcc------ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 6788888877642 2221 1347788888877654333 24556777777765432211 1334
Q ss_pred cCCCCCCCCch----hhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCC
Q 040527 300 LQEFDPPNIPA----DRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNL 375 (468)
Q Consensus 300 ~~~l~~~~~~~----~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L 375 (468)
++.|+.+.+.. ......+..+++++.|+++.+.+.+........+..+++|+.|+++.+.... ..+..+..+++|
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 502 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMM 502 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE-ECTTTTTTCTTC
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc-cChhhhccccCC
Confidence 45554444311 1112335566777777777776521000101234456677777776543211 112335567777
Q ss_pred ceEEEee
Q 040527 376 GAMEIDF 382 (468)
Q Consensus 376 ~~L~l~~ 382 (468)
+.|++++
T Consensus 503 ~~L~Ls~ 509 (606)
T 3t6q_A 503 NHVDLSH 509 (606)
T ss_dssp CEEECCS
T ss_pred CEEECCC
Confidence 7777765
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=8e-12 Score=134.05 Aligned_cols=219 Identities=8% Similarity=-0.006 Sum_probs=109.1
Q ss_pred cCCCccccCccceEEecccccCC------------------CCCCcc--cCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 152 LPDNICTCKTLEMLKLKLDFDFK------------------IPTSRI--CFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 152 lp~~~~~~~~L~~L~L~~~~~~~------------------~~~~~~--~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
+|..+..+++|+.|+|++|.+.. +|.... ++++|++|+|+ +.+.+ .+. ..+.++++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~--~iP-~~l~~L~~ 516 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT--QLP-DFLYDLPE 516 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC--SCC-GGGGGCSS
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc--cCh-HHHhCCCC
Confidence 66666666777777777776665 555544 66777777777 65543 233 45666677
Q ss_pred cceEEEeeee-ccCCC------eeeEE---EEcCcccEEEEeeeeecccCCcee--EEEecCCeeEEEEeccccceE-EE
Q 040527 211 LEDLLIEIHL-EDKHS------VTNLN---ISSLTLKRLTLSLEKVLFSNTKHQ--VMIRAPNLEHLCIYDDTLVSY-MV 277 (468)
Q Consensus 211 Le~L~L~~c~-~~~~~------~~~~~---i~~~~L~~L~l~~~~~~~~~~~~~--i~~~~p~L~~L~l~~~~~~~~-~~ 277 (468)
|+.|+|.+|. .. + +..+. ...++|+.|.+++|... .+.. .....++|+.|+++++....+ .+
T Consensus 517 L~~L~Ls~N~~ls--g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~---~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~ 591 (876)
T 4ecn_A 517 LQSLNIACNRGIS--AAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---EFPASASLQKMVKLGLLDCVHNKVRHLEAF 591 (876)
T ss_dssp CCEEECTTCTTSC--HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---BCCCHHHHTTCTTCCEEECTTSCCCBCCCC
T ss_pred CCEEECcCCCCcc--cccchHHHHhhhhcccccCCccEEEeeCCcCC---ccCChhhhhcCCCCCEEECCCCCcccchhh
Confidence 7777776664 32 1 00000 01235666666665431 1111 111345666666665543322 34
Q ss_pred ecCCCeeEEEEeeeeecc---cccCcCC-CCCCCCchhh---HHHHhhhc--CceeEEEEeccccccccccc--c-cCCC
Q 040527 278 HELHSLTEVHFDIEFDKY---FVEDLQE-FDPPNIPADR---MLQLLKGI--TNTRFLSLSAGIISALDCAF--E-DYIP 345 (468)
Q Consensus 278 ~~~~~L~~~~l~~~~~~~---~~~~~~~-l~~~~~~~~~---~~~~l~~~--~~l~~L~l~~~~~~~~~~l~--~-~~~~ 345 (468)
.++++|+.+++....... .+..++. |+.+.+.... +...+... ++|+.|+++.+.+ .... . ....
T Consensus 592 ~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l---~g~ip~l~~~l~ 668 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI---GSEGRNISCSMD 668 (876)
T ss_dssp CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCT---TTTSSSCSSCTT
T ss_pred cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcC---CCccccchhhhc
Confidence 445555555554322110 1223333 3333331111 11112222 3377788777766 2110 0 0111
Q ss_pred --CCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEee
Q 040527 346 --TFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 346 --~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
..++|+.|+++.+... ..-..++..+++|+.|+++.
T Consensus 669 ~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSN 706 (876)
T ss_dssp TCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCS
T ss_pred cccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCC
Confidence 3347778877765433 12234566788888888877
No 21
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.07 E-value=1.4e-10 Score=120.27 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=23.0
Q ss_pred CccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeee
Q 040527 160 KTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHL 220 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~ 220 (468)
++|++|+|++|.+..+|. .+++|++|+|+ +.+.. +. . .+++|+.|+|.+|.
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~---lp-~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS---LP-V---LPPGLLELSIFSNP 112 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC---CC-C---CCTTCCEEEECSCC
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc---CC-C---CCCCCCEEECcCCc
Confidence 445555555555444322 34455555555 44321 22 1 34455555555544
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.07 E-value=2.3e-11 Score=122.10 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=61.4
Q ss_pred HhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEeeeecCCCCCCCCCC
Q 040527 316 LLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDFLIVGDNLRWTEPQ 395 (468)
Q Consensus 316 ~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~w~~~~ 395 (468)
.+..+++|+.|+++.+.+ ..+....+..+++|+.|+++.+... ...+..+..+++|+.|+++++..... ...
T Consensus 294 ~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~ 365 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEI---NKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRAL----GDQ 365 (455)
T ss_dssp TTTTCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEE----CTT
T ss_pred hcccCCCCCEEECCCCcc---cccChhHhcCcccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCccccc----Chh
Confidence 456778888888888777 4332334557778888888765331 11234467788888888876211100 000
Q ss_pred ccCcccccceeEEEEEeecCchHHHHHHHHHHhcCcccceEEEEe
Q 040527 396 CVPNCLLLHVKKIEICGFEGLKHELELVKYLLKNSEVLDKMIIRS 440 (468)
Q Consensus 396 ~~~~~~~~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~i~~ 440 (468)
.+ .-..+|+++.+.+-.-.. +....+.+.++|+.+.+..
T Consensus 366 ~~--~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 366 SF--LGLPNLKELALDTNQLKS----VPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp TT--TTCTTCCEEECCSSCCSC----CCTTTTTTCTTCCEEECCS
T ss_pred hc--cccccccEEECCCCcccc----CCHhHhccCCcccEEEccC
Confidence 00 112567777665321110 1112346677777777765
No 23
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.07 E-value=1.5e-12 Score=125.34 Aligned_cols=139 Identities=15% Similarity=0.120 Sum_probs=90.7
Q ss_pred HHHHHHHHHh-cCceEEEEEEEecceeeecCCCcccc--CccceEEecccccCCCCCCcccCCcccEEEEE-EEecCccc
Q 040527 124 LKSWVSSAIE-RNVGDIELNHVYVDVLIELPDNICTC--KTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTC 199 (468)
Q Consensus 124 ~~~wl~~~~~-~~l~~L~l~~~~~~~~~~lp~~~~~~--~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~ 199 (468)
-.+|-..+.. ...+.+++.... .. |..+... ++++.|++.++.+...++....+++|++|+|+ +.+.+. .
T Consensus 36 c~~W~~~~~~~~~~~~l~l~~~~----~~-~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~-~ 109 (336)
T 2ast_B 36 CKRWYRLASDESLWQTLDLTGKN----LH-PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS-T 109 (336)
T ss_dssp CHHHHHHHTCSTTSSEEECTTCB----CC-HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH-H
T ss_pred HHHHHHHhcCchhheeecccccc----CC-HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH-H
Confidence 3478776654 346677765211 11 2233344 89999999999988776667789999999999 887643 3
Q ss_pred chhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEecc
Q 040527 200 ITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDD 270 (468)
Q Consensus 200 l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~ 270 (468)
+. .++.+||+|++|+|.+|...+.....+. ..++|+.|.+++|...++.....+.-.+|+|++|+++++
T Consensus 110 ~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 110 LH-GILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp HH-HHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred HH-HHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 77 8899999999999999974410111111 257788888888742111112222234677888887776
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.06 E-value=5.5e-12 Score=132.10 Aligned_cols=204 Identities=7% Similarity=0.016 Sum_probs=94.1
Q ss_pred cCCCcc--ccCccceEEecccccCCC-CCCcccCCcccEEEEE-EE-ecC-c--ccchhhh--hccCCccceEEEeeeec
Q 040527 152 LPDNIC--TCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MY-YPH-S--TCITEKL--FTICPVLEDLLIEIHLE 221 (468)
Q Consensus 152 lp~~~~--~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~-~~~-~--~~l~~~l--~~~cp~Le~L~L~~c~~ 221 (468)
+|..+. .+++|++|+|++|.+... |..+.++++|++|+|+ +. +.+ . ..+. .+ +..|++|+.|++.+|..
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH-hhhccccCCCCCEEECCCCcC
Confidence 555555 555555555555544332 3344455555555555 54 332 0 0011 11 12345555555555543
Q ss_pred cCCCeee--EEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceE--EEecCCC-eeEEEEeeeeeccc
Q 040527 222 DKHSVTN--LNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY--MVHELHS-LTEVHFDIEFDKYF 296 (468)
Q Consensus 222 ~~~~~~~--~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~--~~~~~~~-L~~~~l~~~~~~~~ 296 (468)
. .+.. ..-..++|+.|.+++|.... ... .....++|+.|+++++....+ .+.++++ |+.+++.....
T Consensus 318 ~--~ip~~~~l~~l~~L~~L~L~~N~l~g--~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l--- 389 (636)
T 4eco_A 318 K--TFPVETSLQKMKKLGMLECLYNQLEG--KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL--- 389 (636)
T ss_dssp S--SCCCHHHHTTCTTCCEEECCSCCCEE--ECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCC---
T ss_pred C--ccCchhhhccCCCCCEEeCcCCcCcc--chh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcC---
Confidence 2 2111 01122456666666554220 011 112335566666665543322 1344444 55555443221
Q ss_pred ccCcCCCCCCCCchhhHHHHhhh--cCceeEEEEecccccccccccccCCC-------CCCCcceEEEEEecCCchhHHH
Q 040527 297 VEDLQEFDPPNIPADRMLQLLKG--ITNTRFLSLSAGIISALDCAFEDYIP-------TFPYLTYLKVEIEESGFRLLPI 367 (468)
Q Consensus 297 ~~~~~~l~~~~~~~~~~~~~l~~--~~~l~~L~l~~~~~~~~~~l~~~~~~-------~~~~L~~L~l~~~~~~~~~l~~ 367 (468)
...|. .+.. +++++.|+++.+.+ .......++ .+++|+.|+++.+... ..-..
T Consensus 390 -~~lp~-------------~~~~~~l~~L~~L~Ls~N~l---~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~ 451 (636)
T 4eco_A 390 -KYIPN-------------IFDAKSVSVMSAIDFSYNEI---GSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKE 451 (636)
T ss_dssp -SSCCS-------------CCCTTCSSCEEEEECCSSCT---TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTH
T ss_pred -cccch-------------hhhhcccCccCEEECcCCcC---CCcchhhhcccccccccCCCCCEEECcCCccC-cCCHH
Confidence 11111 1122 34778888887766 222111222 4557777777665432 11234
Q ss_pred HHhcCCCCceEEEee
Q 040527 368 ILRSLPNLGAMEIDF 382 (468)
Q Consensus 368 ll~~~p~L~~L~l~~ 382 (468)
++..+++|+.|++..
T Consensus 452 ~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 452 LFSTGSPLSSINLMG 466 (636)
T ss_dssp HHHTTCCCSEEECCS
T ss_pred HHccCCCCCEEECCC
Confidence 566778888888776
No 25
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.06 E-value=3.5e-12 Score=132.49 Aligned_cols=281 Identities=17% Similarity=0.134 Sum_probs=166.8
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccc--------------------------cC-----CCCCCcccC
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDF--------------------------DF-----KIPTSRICF 182 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~--------------------------~~-----~~~~~~~~~ 182 (468)
.+++.|++..+.. ...+|..+..+++|+.|.++++. +. ..+.....+
T Consensus 211 ~~L~~L~L~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 211 PNLKSLKLNRAVP--LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp TTCCEEECCTTSC--HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred CCCcEEecCCCCc--HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 6788888763311 12255555566777777755442 11 111112257
Q ss_pred CcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcccEEEEeee--------eecccCCce
Q 040527 183 PSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLKRLTLSLE--------KVLFSNTKH 253 (468)
Q Consensus 183 ~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~--------~~~~~~~~~ 253 (468)
++|++|+|+ +.+.+ ..+. .++.+||+|++|.+.+|. ...++..+.-.+++|+.|.+..| ...++....
T Consensus 289 ~~L~~L~L~~~~l~~-~~l~-~~~~~~~~L~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 289 SRLTTLNLSYATVQS-YDLV-KLLCQCPKLQRLWVLDYI-EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp TTCCEEECTTCCCCH-HHHH-HHHTTCTTCCEEEEEGGG-HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred CCCCEEEccCCCCCH-HHHH-HHHhcCCCcCEEeCcCcc-CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 899999999 87544 4477 778889999999999883 21122223224678999999653 111111112
Q ss_pred eEEEecCCeeEEEEeccccceE---EE-ecCCCeeEEEEeeee--ecccccCcCCCCCCCCchhhHHHHhhhcCceeEEE
Q 040527 254 QVMIRAPNLEHLCIYDDTLVSY---MV-HELHSLTEVHFDIEF--DKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLS 327 (468)
Q Consensus 254 ~i~~~~p~L~~L~l~~~~~~~~---~~-~~~~~L~~~~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~ 327 (468)
.+...+|+|++|.+.++..... .+ .++++|+.+++.... ....+...|. +..+..++..+++|+.|+
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~-------~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL-------DIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT-------HHHHHHHHHHCTTCCEEE
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch-------hhHHHHHHhhCCCccEEe
Confidence 2222468999997765543221 12 357888888876422 0011111111 457778889999999999
Q ss_pred EecccccccccccccCCC-CCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEeeeecCCCCCCCCCCccCccccccee
Q 040527 328 LSAGIISALDCAFEDYIP-TFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDFLIVGDNLRWTEPQCVPNCLLLHVK 406 (468)
Q Consensus 328 l~~~~~~~~~~l~~~~~~-~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~w~~~~~~~~~~~~~L~ 406 (468)
+++ .. .......+. .+++|+.|+|+.+.....++..+..+||+|+.|+|.++...+. + ...+.. ...+|+
T Consensus 439 L~~-~l---~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~-~---~~~~~~-~l~~L~ 509 (594)
T 2p1m_B 439 LSG-LL---TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK-A---LLANAS-KLETMR 509 (594)
T ss_dssp CCS-SC---CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH-H---HHHTGG-GGGGSS
T ss_pred ecC-cc---cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH-H---HHHHHH-hCCCCC
Confidence 976 33 111111122 4788999999987766677888889999999999997322110 0 000011 236899
Q ss_pred EEEEEeecCchHHHHHHHHHHhcCcccceEEE
Q 040527 407 KIEICGFEGLKHELELVKYLLKNSEVLDKMII 438 (468)
Q Consensus 407 ~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~i 438 (468)
.+.+.++..... -++.+.+..|.|+...+
T Consensus 510 ~L~l~~~~~~~~---~~~~l~~~lp~l~i~~~ 538 (594)
T 2p1m_B 510 SLWMSSCSVSFG---ACKLLGQKMPKLNVEVI 538 (594)
T ss_dssp EEEEESSCCBHH---HHHHHHHHCTTEEEEEE
T ss_pred EEeeeCCCCCHH---HHHHHHHhCCCCEEEEe
Confidence 999998876543 34455567777754333
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.06 E-value=2.9e-12 Score=133.28 Aligned_cols=228 Identities=15% Similarity=0.137 Sum_probs=127.7
Q ss_pred cCceEEEEEEEecceeeecC-CCccccCccceEEecccccCCCCCC-cccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIELP-DNICTCKTLEMLKLKLDFDFKIPTS-RICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
.+++.|++.... ...++ ..+..+++|++|+|++|.+...++. +.++++|++|+|+ +.+... .. .++.++++
T Consensus 75 ~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l--~~-~~~~~l~~ 148 (597)
T 3oja_B 75 RQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL--PR-GIFHNTPK 148 (597)
T ss_dssp CCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CT-TTTTTCTT
T ss_pred CCCcEEECCCCC---CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC--CH-HHhccCCC
Confidence 466777665211 22333 3555667778888877777666443 4677778888887 766532 23 45677778
Q ss_pred cceEEEeeeeccCCCeeeEEE-EcCcccEEEEeeeeecccCCceeEEE-ecCCeeEEEEeccccceEEEecCCCeeEEEE
Q 040527 211 LEDLLIEIHLEDKHSVTNLNI-SSLTLKRLTLSLEKVLFSNTKHQVMI-RAPNLEHLCIYDDTLVSYMVHELHSLTEVHF 288 (468)
Q Consensus 211 Le~L~L~~c~~~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~i~~-~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l 288 (468)
|+.|+|.+|... ++..-.+ ..++|+.|.+++|.... +.+ ..|+|+.|+++++.... +...++|+.+++
T Consensus 149 L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~l~~L~~L~l~~n~l~~--l~~~~~L~~L~l 218 (597)
T 3oja_B 149 LTTLSMSNNNLE--RIEDDTFQATTSLQNLQLSSNRLTH------VDLSLIPSLFHANVSYNLLST--LAIPIAVEELDA 218 (597)
T ss_dssp CCEEECCSSCCC--BCCTTTTTTCTTCCEEECTTSCCSB------CCGGGCTTCSEEECCSSCCSE--EECCTTCSEEEC
T ss_pred CCEEEeeCCcCC--CCChhhhhcCCcCcEEECcCCCCCC------cChhhhhhhhhhhcccCcccc--ccCCchhheeec
Confidence 888888777644 2211111 23567777777765321 111 24667777666654432 233445555554
Q ss_pred eeeeeccc-ccCcCCCCCCCCchhhH--HHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhH
Q 040527 289 DIEFDKYF-VEDLQEFDPPNIPADRM--LQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLL 365 (468)
Q Consensus 289 ~~~~~~~~-~~~~~~l~~~~~~~~~~--~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l 365 (468)
........ ....+.|+.+.+....+ ...+..+++|+.|+++++.+ .......+..+++|+.|+|+.+.. ..+
T Consensus 219 s~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~Ls~N~l--~~l 293 (597)
T 3oja_B 219 SHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISNNRL--VAL 293 (597)
T ss_dssp CSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC---CEEESGGGTTCSSCCEEECTTSCC--CEE
T ss_pred cCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCcc---CCCCHHHhcCccCCCEEECCCCCC--CCC
Confidence 33211110 00112233222200000 13467788899999998877 433233456778888888876533 223
Q ss_pred HHHHhcCCCCceEEEee
Q 040527 366 PIILRSLPNLGAMEIDF 382 (468)
Q Consensus 366 ~~ll~~~p~L~~L~l~~ 382 (468)
+.....+|+|+.|+|++
T Consensus 294 ~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 294 NLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp ECSSSCCTTCCEEECCS
T ss_pred CcccccCCCCcEEECCC
Confidence 33346689999999987
No 27
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.04 E-value=2.2e-11 Score=122.19 Aligned_cols=82 Identities=17% Similarity=0.120 Sum_probs=42.9
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCC-CCcccCCcccEEEEE-EEecCcccchhhhhccCCcc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIP-TSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVL 211 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~L 211 (468)
.+++.|++.. ..-..-.|..+..+++|++|+|++|.+...+ ..+.++++|++|+|+ +.+... .. ..+.++++|
T Consensus 75 ~~l~~L~L~~--n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLME--NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI--PS-GAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCS--SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC--CT-TTSSSCTTC
T ss_pred CCccEEECcC--CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc--Ch-hhhcccCCC
Confidence 3555555542 1111122334445566666666666655542 234556666666666 555421 12 445566666
Q ss_pred ceEEEeeee
Q 040527 212 EDLLIEIHL 220 (468)
Q Consensus 212 e~L~L~~c~ 220 (468)
+.|+|.+|.
T Consensus 150 ~~L~L~~N~ 158 (452)
T 3zyi_A 150 RELWLRNNP 158 (452)
T ss_dssp CEEECCSCC
T ss_pred CEEECCCCC
Confidence 666666664
No 28
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.04 E-value=6.8e-12 Score=134.40 Aligned_cols=134 Identities=17% Similarity=0.043 Sum_probs=71.3
Q ss_pred eeecCCCccccCccceEEecccccCCC-CC--CcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCC
Q 040527 149 LIELPDNICTCKTLEMLKLKLDFDFKI-PT--SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKH 224 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~--~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~ 224 (468)
...+|..+..+++|++|+|++|.+... |. ....+++|++|+|+ +.+.+.. -. .++.+++.|++|+|.+|...
T Consensus 89 ~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~-~~~~~l~~L~~L~Ls~n~l~-- 164 (768)
T 3rgz_A 89 INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG-KV-SGGLKLNSLEVLDLSANSIS-- 164 (768)
T ss_dssp EEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCS-SC-CSCCCCTTCSEEECCSSCCE--
T ss_pred cCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcC-CH-HHhccCCCCCEEECCCCccC--
Confidence 344556666667777777777766432 23 45567777777777 6655322 22 33456677777777766533
Q ss_pred CeeeE----EEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccce--EEEecCCCeeEEEEee
Q 040527 225 SVTNL----NISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVS--YMVHELHSLTEVHFDI 290 (468)
Q Consensus 225 ~~~~~----~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~--~~~~~~~~L~~~~l~~ 290 (468)
+.... .-..++|+.|.+++|....... . ...++|++|+++++.... ..+.++++|+.+++..
T Consensus 165 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD---V-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISG 232 (768)
T ss_dssp EETHHHHHHTTCCTTCCEEECCSSEEESCCB---C-TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCS
T ss_pred CcCChhhhhhccCCCCCEEECCCCcccccCC---c-ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcC
Confidence 11100 0123566777766665321111 0 244667777766654321 1145566666666543
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.03 E-value=2.1e-11 Score=127.05 Aligned_cols=275 Identities=16% Similarity=0.158 Sum_probs=180.1
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCC-CCCcccCCcccEEEEE-EEecCcccchhhhhccCCcc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVL 211 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~L 211 (468)
.++++|++... ....+|..+..+++|++|++++|.+... +..+..+++|++|+|+ +.+...- -. ..+.++++|
T Consensus 278 ~~L~~L~l~~n---~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~-~~~~~l~~L 352 (606)
T 3t6q_A 278 SGLQELDLTAT---HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL-GT-GCLENLENL 352 (606)
T ss_dssp TTCSEEECTTS---CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC-CS-STTTTCTTC
T ss_pred cCCCEEeccCC---ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc-ch-hhhhccCcC
Confidence 46777777632 2447888888899999999999998776 3457789999999999 8765321 23 457889999
Q ss_pred ceEEEeeeeccCCCeee--EEE-EcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceE----EEecCCCee
Q 040527 212 EDLLIEIHLEDKHSVTN--LNI-SSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY----MVHELHSLT 284 (468)
Q Consensus 212 e~L~L~~c~~~~~~~~~--~~i-~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~----~~~~~~~L~ 284 (468)
++|++.+|... +... ..+ ..++|+.|.+++|...... .......++|++|+++++..... .+.++++|+
T Consensus 353 ~~L~l~~n~l~--~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 353 RELDLSHDDIE--TSDCCNLQLRNLSHLQSLNLSYNEPLSLK--TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CEEECCSSCCC--EEEESTTTTTTCTTCCEEECCSCSCEEEC--TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred CEEECCCCccc--cccCcchhcccCCCCCEEECCCCcCCcCC--HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 99999998654 2210 001 2468999999987521100 00011358899999988754322 256788899
Q ss_pred EEEEeeeeecc----cccCcCCCCCCCCchhhHH-------HHhhhcCceeEEEEecccccccccccccCCCCCCCcceE
Q 040527 285 EVHFDIEFDKY----FVEDLQEFDPPNIPADRML-------QLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYL 353 (468)
Q Consensus 285 ~~~l~~~~~~~----~~~~~~~l~~~~~~~~~~~-------~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L 353 (468)
.+++....... .+..+++|+.+.+....+. ..+..+++++.|+++.+.+ ..+....+..+++|+.|
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL---SSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC---CEECTTTTTTCTTCCEE
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc---CccChhhhccccCCCEE
Confidence 88886553322 2456777777666222221 3477899999999999988 44433456788999999
Q ss_pred EEEEecCCchhHHHHHhcCCCCceEEEeeeecCCCCCCCCCCccC-c--ccccceeEEEEE--eecCchHHHHHHHHHHh
Q 040527 354 KVEIEESGFRLLPIILRSLPNLGAMEIDFLIVGDNLRWTEPQCVP-N--CLLLHVKKIEIC--GFEGLKHELELVKYLLK 428 (468)
Q Consensus 354 ~l~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~w~~~~~~~-~--~~~~~L~~v~i~--~~~g~~~e~~~~~~ll~ 428 (468)
+++.+... ...+..+..+++| .|++.+ +....++ . ....+|+.+.+. .+.+.-....++.++-+
T Consensus 506 ~Ls~N~l~-~~~~~~l~~l~~L-~L~L~~---------N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~ 574 (606)
T 3t6q_A 506 DLSHNRLT-SSSIEALSHLKGI-YLNLAS---------NHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKE 574 (606)
T ss_dssp ECCSSCCC-GGGGGGGTTCCSC-EEECCS---------SCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHH
T ss_pred ECCCCccC-cCChhHhCccccc-EEECcC---------CcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHh
Confidence 99876432 2234456778888 888876 2211111 1 123578888886 34455555667777765
Q ss_pred cCc
Q 040527 429 NSE 431 (468)
Q Consensus 429 ~a~ 431 (468)
+..
T Consensus 575 ~~~ 577 (606)
T 3t6q_A 575 NMQ 577 (606)
T ss_dssp CGG
T ss_pred Ccc
Confidence 543
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.03 E-value=7.9e-10 Score=112.88 Aligned_cols=159 Identities=10% Similarity=0.182 Sum_probs=82.8
Q ss_pred eeEEEEeccccceEEE-ecCCCeeEEEEeeeeecc----cccCcCCCCCCCC-----c-hhhHHHHhhhcCceeEEEEec
Q 040527 262 LEHLCIYDDTLVSYMV-HELHSLTEVHFDIEFDKY----FVEDLQEFDPPNI-----P-ADRMLQLLKGITNTRFLSLSA 330 (468)
Q Consensus 262 L~~L~l~~~~~~~~~~-~~~~~L~~~~l~~~~~~~----~~~~~~~l~~~~~-----~-~~~~~~~l~~~~~l~~L~l~~ 330 (468)
|+.|+++++....... ..+++|+.+++....... .+..++.|+.+.+ . ...+...+..+++++.|+++.
T Consensus 304 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383 (520)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS
T ss_pred eeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC
Confidence 5555555544333322 566777777766443211 3445666665554 1 123445677888888888888
Q ss_pred cccccccc-ccccCCCCCCCcceEEEEEecCCchhHHHHHhcC-CCCceEEEeeeecCCCCCCCCCCccCcc--ccccee
Q 040527 331 GIISALDC-AFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSL-PNLGAMEIDFLIVGDNLRWTEPQCVPNC--LLLHVK 406 (468)
Q Consensus 331 ~~~~~~~~-l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~-p~L~~L~l~~~~~~~~~~w~~~~~~~~~--~~~~L~ 406 (468)
+.+ .. +....+..+++|+.|+++.+..... +.... ++|+.|+++. +....+|.. ...+|+
T Consensus 384 N~l---~~~l~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~~L~~L~Ls~---------N~l~~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 384 NSV---SYDEKKGDCSWTKSLLSLNMSSNILTDT----IFRCLPPRIKVLDLHS---------NKIKSIPKQVVKLEALQ 447 (520)
T ss_dssp SCC---BCCGGGCSCCCCTTCCEEECCSSCCCGG----GGGSCCTTCCEEECCS---------SCCCCCCGGGGGCTTCC
T ss_pred CcC---CcccccchhccCccCCEEECcCCCCCcc----hhhhhcccCCEEECCC---------CcccccchhhhcCCCCC
Confidence 877 33 3222345567777777766543211 11122 5777777765 122222222 234566
Q ss_pred EEEEEeecCchHHHHHHHHHHhcCcccceEEEEe
Q 040527 407 KIEICGFEGLKHELELVKYLLKNSEVLDKMIIRS 440 (468)
Q Consensus 407 ~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~i~~ 440 (468)
++.+.+..-.. +-...+.+.+.|+.+.+..
T Consensus 448 ~L~L~~N~l~~----l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 448 ELNVASNQLKS----VPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp EEECCSSCCCC----CCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCcCCc----cCHHHhccCCcccEEECcC
Confidence 66665322110 0011355667777777765
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.02 E-value=4e-11 Score=123.86 Aligned_cols=82 Identities=13% Similarity=0.059 Sum_probs=44.2
Q ss_pred cCceEEEEEEEecceeeecC-CCccccCccceEEecccccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIELP-DNICTCKTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
.++++|++.... ...+| ..+..+++|++|+++++.+...++ .+..+++|++|+|+ +.+.+.. +. ..+.++++
T Consensus 76 ~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-lp-~~~~~l~~ 150 (570)
T 2z63_A 76 SHLSTLILTGNP---IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LP-EYFSNLTN 150 (570)
T ss_dssp TTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC-CC-GGGGGCTT
T ss_pred hhCCEEeCcCCc---CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceec-Ch-hhhcccCC
Confidence 356666654211 12233 344456666666666666655432 35566666666666 6554321 33 44556666
Q ss_pred cceEEEeeee
Q 040527 211 LEDLLIEIHL 220 (468)
Q Consensus 211 Le~L~L~~c~ 220 (468)
|++|++.+|.
T Consensus 151 L~~L~l~~n~ 160 (570)
T 2z63_A 151 LEHLDLSSNK 160 (570)
T ss_dssp CCEEECTTSC
T ss_pred CCEEeCcCCc
Confidence 6666666654
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.01 E-value=1.1e-09 Score=112.53 Aligned_cols=221 Identities=15% Similarity=0.119 Sum_probs=147.1
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCC-CCcccCCcccEEEEE-EEecCcccchhhhhccCCcc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIP-TSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVL 211 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~L 211 (468)
..++.|++... .-....|..+..+++|++|+|++|.+...+ ..+.++++|++|+|+ +.+.+. .. ..+.++++|
T Consensus 26 ~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~-~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFN--KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL--SS-SWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSS--CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC--CH-HHHTTCTTC
T ss_pred CCccEEECcCC--ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc--CH-HHhccCCCC
Confidence 47788887632 212233556677899999999999887764 347789999999999 887643 33 558889999
Q ss_pred ceEEEeeeeccCCCeee--EEEEcCcccEEEEeeeeecccCCceeEE----EecCCeeEEEEeccccceE---EEecCCC
Q 040527 212 EDLLIEIHLEDKHSVTN--LNISSLTLKRLTLSLEKVLFSNTKHQVM----IRAPNLEHLCIYDDTLVSY---MVHELHS 282 (468)
Q Consensus 212 e~L~L~~c~~~~~~~~~--~~i~~~~L~~L~l~~~~~~~~~~~~~i~----~~~p~L~~L~l~~~~~~~~---~~~~~~~ 282 (468)
++|++.+|... ++.. ..-..++|+.|.+++|... ..+. ...++|++|+++++..... .+.++++
T Consensus 101 ~~L~Ls~n~l~--~~~~~~~~~~l~~L~~L~L~~n~~~-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 101 KYLNLMGNPYQ--TLGVTSLFPNLTNLQTLRIGNVETF-----SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp CEEECTTCCCS--SSCSSCSCTTCTTCCEEEEEESSSC-----CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred cEEECCCCccc--ccchhhhhhccCCccEEECCCCccc-----cccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 99999999754 2211 1113468999999988521 1111 1357899999998765443 2455677
Q ss_pred eeEEEEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCC-
Q 040527 283 LTEVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESG- 361 (468)
Q Consensus 283 L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~- 361 (468)
|+.+++..... ......++..+++++.|+++.+.+.+...........+++|+.|++..+...
T Consensus 174 L~~L~l~~n~~----------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 174 IHHLTLHLSES----------------AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp EEEEEEECSBS----------------TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred CceEecccCcc----------------cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 77777653321 1122334567899999999999882211111112345788999999865432
Q ss_pred --chhHHHHHhcCCCCceEEEee
Q 040527 362 --FRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 362 --~~~l~~ll~~~p~L~~L~l~~ 382 (468)
...+...+..+++|+.|++..
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEES
T ss_pred hHHHHHHHHhhhhcccccccccc
Confidence 244555667889999999987
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.01 E-value=7.1e-10 Score=119.98 Aligned_cols=84 Identities=13% Similarity=-0.013 Sum_probs=57.0
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCC-CCC--cccCCcccEEEEE-EEecCcccchhhhhccCC
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKI-PTS--RICFPSLKCLHAE-MYYPHSTCITEKLFTICP 209 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~--~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp 209 (468)
.+++.|++.. ..-....|..+..+++|++|+|++|.+... +.. +..+++|++|+|+ +.+.+.. .. ..+.+++
T Consensus 73 ~~L~~L~Ls~--N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~-~~~~~L~ 148 (844)
T 3j0a_A 73 PNLRILDLGS--SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-LH-PSFGKLN 148 (844)
T ss_dssp TTCCEEECTT--CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-CC-GGGGTCS
T ss_pred CCCCEEECCC--CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-cc-hhHhhCC
Confidence 4677777752 221233466677788888888888877653 222 6678888888888 7776532 34 5577888
Q ss_pred ccceEEEeeeec
Q 040527 210 VLEDLLIEIHLE 221 (468)
Q Consensus 210 ~Le~L~L~~c~~ 221 (468)
+|+.|+|.+|..
T Consensus 149 ~L~~L~Ls~N~i 160 (844)
T 3j0a_A 149 SLKSIDFSSNQI 160 (844)
T ss_dssp SCCEEEEESSCC
T ss_pred CCCEEECCCCcC
Confidence 888888888764
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.01 E-value=1e-10 Score=121.84 Aligned_cols=82 Identities=12% Similarity=0.092 Sum_probs=46.8
Q ss_pred cCceEEEEEEEecceeeec-CCCccccCccceEEecccccCCCC-CCcccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIEL-PDNICTCKTLEMLKLKLDFDFKIP-TSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
.++++|++.. .. ...+ |..+..+++|++|+|++|.+...+ ..+..+++|++|+|+ +.+.+.. +. ..+.++++
T Consensus 80 ~~L~~L~Ls~--n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-lp-~~~~~l~~ 154 (606)
T 3vq2_A 80 HHLSNLILTG--NP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK-LP-AYFSNLTN 154 (606)
T ss_dssp TTCCEEECTT--CC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC-CC-GGGGTCTT
T ss_pred hhcCEeECCC--Cc-ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee-ch-HhHhhcCC
Confidence 4566666642 11 2223 445556677777777777665542 335566677777776 6554322 33 45666677
Q ss_pred cceEEEeeee
Q 040527 211 LEDLLIEIHL 220 (468)
Q Consensus 211 Le~L~L~~c~ 220 (468)
|+.|++.+|.
T Consensus 155 L~~L~Ls~n~ 164 (606)
T 3vq2_A 155 LVHVDLSYNY 164 (606)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEccCCc
Confidence 7777766664
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.00 E-value=7.2e-11 Score=112.41 Aligned_cols=219 Identities=15% Similarity=0.110 Sum_probs=123.6
Q ss_pred CceEEEEEEEecceeeecCCCccccCccceEEecc-cccCC-CCCCcccCCcccEEEEE-EEecCcccchhhhhccCCcc
Q 040527 135 NVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKL-DFDFK-IPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVL 211 (468)
Q Consensus 135 ~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~-~~~~~-~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~L 211 (468)
.+++|++....-.....+|..+..+++|++|+|++ +.+.. .|..+..+++|++|+|+ +.+.+ .+. ..+.++++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p-~~~~~l~~L 127 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--AIP-DFLSQIKTL 127 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--ECC-GGGGGCTTC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--cCC-HHHhCCCCC
Confidence 56677766322212226777777788888888884 55543 34556778888888888 77653 234 557778888
Q ss_pred ceEEEeeeeccCCCeeeEEE-EcCcccEEEEeeeeecccCCceeEEEecC-CeeEEEEeccccceE---EEecCCCeeEE
Q 040527 212 EDLLIEIHLEDKHSVTNLNI-SSLTLKRLTLSLEKVLFSNTKHQVMIRAP-NLEHLCIYDDTLVSY---MVHELHSLTEV 286 (468)
Q Consensus 212 e~L~L~~c~~~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~i~~~~p-~L~~L~l~~~~~~~~---~~~~~~~L~~~ 286 (468)
++|+|.+|... +...-.+ ..++|+.|.+++|..... ........+ +|+.|+++++..... .+.++. |+.+
T Consensus 128 ~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 128 VTLDFSYNALS--GTLPPSISSLPNLVGITFDGNRISGA--IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CEEECCSSEEE--SCCCGGGGGCTTCCEEECCSSCCEEE--CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CEEeCCCCccC--CcCChHHhcCCCCCeEECcCCcccCc--CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 88888887643 1111011 246788888877653110 000001223 778888777644321 122333 5555
Q ss_pred EEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHH
Q 040527 287 HFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLP 366 (468)
Q Consensus 287 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~ 366 (468)
++....... .....+..+++++.|+++.+.+ ... .+.+..+++|++|+++.+... ..++
T Consensus 203 ~Ls~N~l~~----------------~~~~~~~~l~~L~~L~L~~N~l---~~~-~~~~~~l~~L~~L~Ls~N~l~-~~~p 261 (313)
T 1ogq_A 203 DLSRNMLEG----------------DASVLFGSDKNTQKIHLAKNSL---AFD-LGKVGLSKNLNGLDLRNNRIY-GTLP 261 (313)
T ss_dssp ECCSSEEEE----------------CCGGGCCTTSCCSEEECCSSEE---CCB-GGGCCCCTTCCEEECCSSCCE-ECCC
T ss_pred ECcCCcccC----------------cCCHHHhcCCCCCEEECCCCce---eee-cCcccccCCCCEEECcCCccc-CcCC
Confidence 544322110 1112345667788888877766 222 112445677788777654321 1233
Q ss_pred HHHhcCCCCceEEEee
Q 040527 367 IILRSLPNLGAMEIDF 382 (468)
Q Consensus 367 ~ll~~~p~L~~L~l~~ 382 (468)
..+..+++|+.|++++
T Consensus 262 ~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSF 277 (313)
T ss_dssp GGGGGCTTCCEEECCS
T ss_pred hHHhcCcCCCEEECcC
Confidence 4466778888888876
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.00 E-value=3e-11 Score=120.78 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=34.6
Q ss_pred CccccCccceEEecccccCCCC-CCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeee
Q 040527 155 NICTCKTLEMLKLKLDFDFKIP-TSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHL 220 (468)
Q Consensus 155 ~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~ 220 (468)
.+..+++|++|+|++|.+...+ ..+.++++|++|+|+ +.+... -. ..+.++++|++|+|.+|.
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~~~l~~L~~L~L~~N~ 147 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI--PN-GAFVYLSKLKELWLRNNP 147 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC--CT-TTSCSCSSCCEEECCSCC
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee--CH-hHhhccccCceeeCCCCc
Confidence 3444566666666666655442 234456666666666 555431 12 345566666666666654
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.99 E-value=4.9e-10 Score=121.22 Aligned_cols=105 Identities=17% Similarity=0.128 Sum_probs=54.4
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCC-CCCcccCCcccEEEEE-EEecCcccchhhhhccCCcc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVL 211 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~L 211 (468)
.+++.|++.... .....|..+..+++|+.|+|++|.+... +..+.++++|++|+|+ +.+.+. .. ..+.++|.|
T Consensus 266 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~-~~~~~l~~L 340 (844)
T 3j0a_A 266 SSVRHLDLSHGF--VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL--YS-SNFYGLPKV 340 (844)
T ss_dssp SCCCEEECTTCC--CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC--CS-CSCSSCTTC
T ss_pred CCccEEECCCCc--ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc--CH-HHhcCCCCC
Confidence 456666664211 1112233444556777777777666554 2335566677777777 655432 12 345566666
Q ss_pred ceEEEeeeeccCCCeeeEEE-EcCcccEEEEeeee
Q 040527 212 EDLLIEIHLEDKHSVTNLNI-SSLTLKRLTLSLEK 245 (468)
Q Consensus 212 e~L~L~~c~~~~~~~~~~~i-~~~~L~~L~l~~~~ 245 (468)
+.|++.+|... .+..-.+ ..++|+.|.+++|.
T Consensus 341 ~~L~L~~N~i~--~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 341 AYIDLQKNHIA--IIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CEEECCSCCCC--CCCSSCSCSCCCCCEEEEETCC
T ss_pred CEEECCCCCCC--ccChhhhcCCCCCCEEECCCCC
Confidence 66666666533 2221111 13456666665554
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=1.5e-11 Score=132.01 Aligned_cols=231 Identities=13% Similarity=0.105 Sum_probs=131.8
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccc-cCC--CCCC-------cccCCcccEEEEE-EEecCcccchh
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDF-DFK--IPTS-------RICFPSLKCLHAE-MYYPHSTCITE 202 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~-~~~--~~~~-------~~~~~~L~~L~L~-~~~~~~~~l~~ 202 (468)
.+++.|++... .....+|..+..+++|+.|+|++|. +.. .|.. ...+++|++|+|+ +.+. .+.
T Consensus 491 ~~L~~L~Ls~N--~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~---~ip- 564 (876)
T 4ecn_A 491 KDLTDVELYNC--PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---EFP- 564 (876)
T ss_dssp TTCCEEEEESC--TTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---BCC-
T ss_pred CCCCEEECcCC--CCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC---ccC-
Confidence 57888888732 2245678888888999999999997 654 2332 2345699999999 8776 254
Q ss_pred h--hhccCCccceEEEeeeeccCCCeeeEEE-EcCcccEEEEeeeeecccCCceeEEEecCC-eeEEEEeccccceEE--
Q 040527 203 K--LFTICPVLEDLLIEIHLEDKHSVTNLNI-SSLTLKRLTLSLEKVLFSNTKHQVMIRAPN-LEHLCIYDDTLVSYM-- 276 (468)
Q Consensus 203 ~--l~~~cp~Le~L~L~~c~~~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~-L~~L~l~~~~~~~~~-- 276 (468)
. .+.++++|+.|+|.+|... .+. .+ ..++|+.|.+++|... .........++ |+.|+++++....++
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~--~lp--~~~~L~~L~~L~Ls~N~l~---~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~ 637 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVR--HLE--AFGTNVKLTDLKLDYNQIE---EIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCC--BCC--CCCTTSEESEEECCSSCCS---CCCTTSCEECTTCCEEECCSSCCCSCCSC
T ss_pred ChhhhhcCCCCCEEECCCCCcc--cch--hhcCCCcceEEECcCCccc---cchHHHhhccccCCEEECcCCCCCcCchh
Confidence 5 6788999999999988754 333 22 2357888888887642 11111224566 888888877554322
Q ss_pred EecC--CCeeEEEEeeeeecccccC---------cCCCCCCCCc----hhhHHHHhhhcCceeEEEEecccccccccccc
Q 040527 277 VHEL--HSLTEVHFDIEFDKYFVED---------LQEFDPPNIP----ADRMLQLLKGITNTRFLSLSAGIISALDCAFE 341 (468)
Q Consensus 277 ~~~~--~~L~~~~l~~~~~~~~~~~---------~~~l~~~~~~----~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~ 341 (468)
+... ++|+.+++........+.. .+.|+.+.+. ......++..+++|+.|+++.+.+ ..+..
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L---~~ip~ 714 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM---TSIPE 714 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC---SCCCT
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC---CccCh
Confidence 2222 2366666654332111111 1123222220 111234455677888888877766 32211
Q ss_pred cC-------CCCCCCcceEEEEEecCCchhHHHHHh--cCCCCceEEEee
Q 040527 342 DY-------IPTFPYLTYLKVEIEESGFRLLPIILR--SLPNLGAMEIDF 382 (468)
Q Consensus 342 ~~-------~~~~~~L~~L~l~~~~~~~~~l~~ll~--~~p~L~~L~l~~ 382 (468)
.. ...+++|+.|+|+.+... .++..+. .+|+|+.|+|++
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSY 762 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCS
T ss_pred HHhccccccccccCCccEEECCCCCCc--cchHHhhhccCCCcCEEEeCC
Confidence 11 112336666666554322 2333333 566666666665
No 39
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.99 E-value=6.5e-11 Score=119.82 Aligned_cols=208 Identities=10% Similarity=0.076 Sum_probs=139.6
Q ss_pred ccCccceEEecccccCCCC-CCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCc
Q 040527 158 TCKTLEMLKLKLDFDFKIP-TSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLT 235 (468)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~ 235 (468)
.+++|++|+|++|.+...+ ..+..+++|++|+|+ +.+.+ .. . +.+++.|+.|+|.+|... + +. ..++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~-~-l~~l~~L~~L~Ls~N~l~--~---l~-~~~~ 100 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE---TL-D-LESLSTLRTLDLNNNYVQ--E---LL-VGPS 100 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE---EE-E-CTTCTTCCEEECCSSEEE--E---EE-ECTT
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC---Cc-c-cccCCCCCEEEecCCcCC--C---CC-CCCC
Confidence 3468999999999888764 357789999999999 87754 22 3 778899999999998654 2 22 3478
Q ss_pred ccEEEEeeeeecccCCceeEE-EecCCeeEEEEeccccce---EEEecCCCeeEEEEeeeeecccccCcCCCCCCCCchh
Q 040527 236 LKRLTLSLEKVLFSNTKHQVM-IRAPNLEHLCIYDDTLVS---YMVHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPAD 311 (468)
Q Consensus 236 L~~L~l~~~~~~~~~~~~~i~-~~~p~L~~L~l~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 311 (468)
|+.|.+++|... .+. ...|+|+.|+++++.... ..+.++++|+.+++...... ..
T Consensus 101 L~~L~L~~N~l~------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------------~~ 159 (487)
T 3oja_A 101 IETLHAANNNIS------RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID---------------TV 159 (487)
T ss_dssp CCEEECCSSCCC------CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC---------------EE
T ss_pred cCEEECcCCcCC------CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC---------------Cc
Confidence 999999998632 222 245889999999876543 34567888888877543211 11
Q ss_pred hHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEeeeecCCCCCC
Q 040527 312 RMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDFLIVGDNLRW 391 (468)
Q Consensus 312 ~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~w 391 (468)
....+...+++|+.|+++.+.+ ..+ +....+++|+.|+|+.+... +++.-+..+++|+.|++++
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l---~~~--~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~--------- 223 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFI---YDV--KGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRN--------- 223 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCC---CEE--ECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTT---------
T ss_pred ChHHHhhhCCcccEEecCCCcc---ccc--cccccCCCCCEEECCCCCCC--CCCHhHcCCCCccEEEecC---------
Confidence 1122334688999999999988 333 22335889999999876442 2222267889999999987
Q ss_pred CCCCccCcc--cccceeEEEEEee
Q 040527 392 TEPQCVPNC--LLLHVKKIEICGF 413 (468)
Q Consensus 392 ~~~~~~~~~--~~~~L~~v~i~~~ 413 (468)
+....+|.. ...+|+.+.+.+.
T Consensus 224 N~l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 224 NKLVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp SCCCEECTTCCCCTTCCEEECTTC
T ss_pred CcCcccchhhccCCCCCEEEcCCC
Confidence 222222222 2357777777543
No 40
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.98 E-value=4.3e-11 Score=114.20 Aligned_cols=230 Identities=9% Similarity=0.062 Sum_probs=144.6
Q ss_pred cCccceEEecccccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcc
Q 040527 159 CKTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTL 236 (468)
Q Consensus 159 ~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L 236 (468)
+++|++|+|++|.+...++ .+..+++|++|+|+ +.+.+ .. . +..++.|+.|++.+|... .+. ..++|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~-~-~~~l~~L~~L~Ls~n~l~-----~l~-~~~~L 101 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE---TL-D-LESLSTLRTLDLNNNYVQ-----ELL-VGPSI 101 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE---EE-E-ETTCTTCCEEECCSSEEE-----EEE-ECTTC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc---ch-h-hhhcCCCCEEECcCCccc-----ccc-CCCCc
Confidence 4688888888888877632 46678888888888 76653 22 3 667888888888888644 222 34788
Q ss_pred cEEEEeeeeecccCCceeEE-EecCCeeEEEEeccccceE---EEecCCCeeEEEEeeeeecccccCcCCCCCCCCchhh
Q 040527 237 KRLTLSLEKVLFSNTKHQVM-IRAPNLEHLCIYDDTLVSY---MVHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADR 312 (468)
Q Consensus 237 ~~L~l~~~~~~~~~~~~~i~-~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 312 (468)
+.|.+++|.. ..+. ...++|++|+++++..... .+.++++|+.+++...... ...
T Consensus 102 ~~L~l~~n~l------~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------------~~~ 160 (317)
T 3o53_A 102 ETLHAANNNI------SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID---------------TVN 160 (317)
T ss_dssp CEEECCSSCC------SEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC---------------EEE
T ss_pred CEEECCCCcc------CCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC---------------ccc
Confidence 8888888752 2222 2357888888888755432 4566778887776533211 111
Q ss_pred HHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEeeeecCCCCCCC
Q 040527 313 MLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDFLIVGDNLRWT 392 (468)
Q Consensus 313 ~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~w~ 392 (468)
...+...+++++.|+++.+.+ ..+ +....+++|+.|+++.+... .++.-+..+++|+.|+++++
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l---~~~--~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~L~~N--------- 224 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFI---YDV--KGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNN--------- 224 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCC---CEE--ECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTS---------
T ss_pred HHHHhhccCcCCEEECCCCcC---ccc--ccccccccCCEEECCCCcCC--cchhhhcccCcccEEECcCC---------
Confidence 122345678999999999988 333 22334889999999876442 22222678899999999872
Q ss_pred CCCccCcc--cccceeEEEEEeecCchHHHHHHHHHHhcCcccceEEEE
Q 040527 393 EPQCVPNC--LLLHVKKIEICGFEGLKHELELVKYLLKNSEVLDKMIIR 439 (468)
Q Consensus 393 ~~~~~~~~--~~~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~i~ 439 (468)
....++.. ...+|+.+.+.+-.-.. ......+...+.|+.+.+.
T Consensus 225 ~l~~l~~~~~~l~~L~~L~l~~N~~~~---~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 225 KLVLIEKALRFSQNLEHFDLRGNGFHC---GTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCCEECTTCCCCTTCCEEECTTCCCBH---HHHHHHHHTCHHHHHHHHH
T ss_pred cccchhhHhhcCCCCCEEEccCCCccC---cCHHHHHhccccceEEECC
Confidence 22122221 23578888776443321 1233445566666666554
No 41
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.98 E-value=1.3e-11 Score=121.27 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=31.5
Q ss_pred HHhhhcCceeEEEEecccccc--cccccccCCCCCCCcceEEEEEecCCc---hhHHHHHhcCCCCceEEEee
Q 040527 315 QLLKGITNTRFLSLSAGIISA--LDCAFEDYIPTFPYLTYLKVEIEESGF---RLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 315 ~~l~~~~~l~~L~l~~~~~~~--~~~l~~~~~~~~~~L~~L~l~~~~~~~---~~l~~ll~~~p~L~~L~l~~ 382 (468)
..+..+++|+.|.++.+.+.+ +..+....+..+++|+.|+|+.+.... ..++..+..+|+|+.|+|.+
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 344455556666665555411 001101133455555655555443321 33444455556666666554
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.97 E-value=4.8e-11 Score=114.47 Aligned_cols=61 Identities=21% Similarity=0.169 Sum_probs=39.5
Q ss_pred hhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEee
Q 040527 317 LKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 317 l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
+..+++++.|+++.+.+ ..+....+..+++|+.|+++.+... .++.-+..+++|+.|++.+
T Consensus 212 ~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 212 LKGLNNLAKLGLSFNSI---SAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp GTTCTTCCEEECCSSCC---CEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCS
T ss_pred hcCCCCCCEEECCCCcC---ceeChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCC
Confidence 45677788888887776 3332234556777888888765332 3333356778888888876
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.97 E-value=4.1e-12 Score=127.78 Aligned_cols=244 Identities=11% Similarity=0.095 Sum_probs=139.3
Q ss_pred HHHH-HHHhcCceEEEEEEEecc--eeeecCCCccccCccceEEecccccCCCCC--CcccCC----cccEEEEE-EEec
Q 040527 126 SWVS-SAIERNVGDIELNHVYVD--VLIELPDNICTCKTLEMLKLKLDFDFKIPT--SRICFP----SLKCLHAE-MYYP 195 (468)
Q Consensus 126 ~wl~-~~~~~~l~~L~l~~~~~~--~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~----~L~~L~L~-~~~~ 195 (468)
.|.. ....++++.|++..+.-. ....++..+..+++|++|+|++|.+.+..+ ....++ +|++|+|+ +.+.
T Consensus 19 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 19 RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98 (461)
T ss_dssp HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred hHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence 4554 233478999998843211 112455666677999999999988754211 122344 79999999 8877
Q ss_pred Ccc--cchhhhhccCCccceEEEeeeeccCCCeeeEEE----EcCcccEEEEeeeeecccC--CceeEEEecCCeeEEEE
Q 040527 196 HST--CITEKLFTICPVLEDLLIEIHLEDKHSVTNLNI----SSLTLKRLTLSLEKVLFSN--TKHQVMIRAPNLEHLCI 267 (468)
Q Consensus 196 ~~~--~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i----~~~~L~~L~l~~~~~~~~~--~~~~i~~~~p~L~~L~l 267 (468)
+.+ .+. ..+..|+.|++|+|.+|.....+...+.- ..++|+.|.+++|...... ......-..++|++|++
T Consensus 99 ~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 177 (461)
T 1z7x_W 99 GAGCGVLS-STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177 (461)
T ss_dssp GGGHHHHH-HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHH-HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEEC
Confidence 543 355 66788999999999998743101111111 1246999999888632110 00111123588999999
Q ss_pred eccccceEE---E-----ecCCCeeEEEEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEeccccccc--c
Q 040527 268 YDDTLVSYM---V-----HELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISAL--D 337 (468)
Q Consensus 268 ~~~~~~~~~---~-----~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~--~ 337 (468)
+++...... + ...++|+.+++...... .. ....+...+..+++++.|+++.+.+.+. .
T Consensus 178 ~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~----~~--------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT----SD--------NCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp CSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB----TT--------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred cCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc----HH--------HHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 887543211 1 12457777766433210 00 0123455666777788888777765211 0
Q ss_pred cccccCCCCCCCcceEEEEEecCCc---hhHHHHHhcCCCCceEEEee
Q 040527 338 CAFEDYIPTFPYLTYLKVEIEESGF---RLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 338 ~l~~~~~~~~~~L~~L~l~~~~~~~---~~l~~ll~~~p~L~~L~l~~ 382 (468)
.+.......+++|++|+++.+.... ..+...+..+++|+.|++++
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 0101112246677777777654432 23556666777777777765
No 44
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.97 E-value=2e-11 Score=127.78 Aligned_cols=189 Identities=10% Similarity=0.079 Sum_probs=114.0
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccc-cCC--CCCCcccC------CcccEEEEE-EEecCcccchhh
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDF-DFK--IPTSRICF------PSLKCLHAE-MYYPHSTCITEK 203 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~-~~~--~~~~~~~~------~~L~~L~L~-~~~~~~~~l~~~ 203 (468)
.++++|++... .....+|..+..+++|++|+|++|. +.. .|.....+ ++|++|+|+ +.+.. +. .
T Consensus 249 ~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~---ip-~ 322 (636)
T 4eco_A 249 KDLTDVEVYNC--PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT---FP-V 322 (636)
T ss_dssp TTCCEEEEECC--TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS---CC-C
T ss_pred CCCCEEEecCC--cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc---cC-c
Confidence 57888888732 2245788888889999999999997 664 34444444 999999999 88762 44 5
Q ss_pred --hhccCCccceEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEEecCC-eeEEEEeccccceEE--Ee
Q 040527 204 --LFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPN-LEHLCIYDDTLVSYM--VH 278 (468)
Q Consensus 204 --l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~-L~~L~l~~~~~~~~~--~~ 278 (468)
.+.+++.|+.|++.+|...+ .+.. .-..++|+.|.+++|.... ........++ |++|+++++....++ +.
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g-~ip~-~~~l~~L~~L~L~~N~l~~---lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~ 397 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEG-KLPA-FGSEIKLASLNLAYNQITE---IPANFCGFTEQVENLSFAHNKLKYIPNIFD 397 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEE-ECCC-CEEEEEESEEECCSSEEEE---CCTTSEEECTTCCEEECCSSCCSSCCSCCC
T ss_pred hhhhccCCCCCEEeCcCCcCcc-chhh-hCCCCCCCEEECCCCcccc---ccHhhhhhcccCcEEEccCCcCcccchhhh
Confidence 68889999999999987441 1111 1124578888888876431 1111234566 888888776544221 22
Q ss_pred c--CCCeeEEEEeeeeecc----ccc-------CcCCCCCCCCc----hhhHHHHhhhcCceeEEEEecccc
Q 040527 279 E--LHSLTEVHFDIEFDKY----FVE-------DLQEFDPPNIP----ADRMLQLLKGITNTRFLSLSAGII 333 (468)
Q Consensus 279 ~--~~~L~~~~l~~~~~~~----~~~-------~~~~l~~~~~~----~~~~~~~l~~~~~l~~L~l~~~~~ 333 (468)
. +++|+.+++....... .+. .++.|+.+.+. ......++..+++++.|+++.+.+
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC
Confidence 2 2356666665432211 111 22233333221 111223455677777777777766
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.96 E-value=7.1e-11 Score=121.98 Aligned_cols=204 Identities=16% Similarity=0.136 Sum_probs=112.1
Q ss_pred ecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeE
Q 040527 151 ELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNL 229 (468)
Q Consensus 151 ~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~ 229 (468)
..|..+..+++|+.|++.++.+...|.....+ +|++|+++ +.+.. +. ...++.|+.|.+.+|... .....
T Consensus 273 ~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~---l~---~~~l~~L~~L~l~~n~~~--~~~~~ 343 (570)
T 2z63_A 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ---FP---TLKLKSLKRLTFTSNKGG--NAFSE 343 (570)
T ss_dssp CSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS---CC---BCBCSSCCEEEEESCBSC--CBCCC
T ss_pred hchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc---cC---cccccccCEEeCcCCccc--ccccc
Confidence 34555566788888888888877766556666 88888888 77652 33 246788888888887643 21111
Q ss_pred EEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceE--EEecCCCeeEEEEeeeeecccccCcCCCCCCC
Q 040527 230 NISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY--MVHELHSLTEVHFDIEFDKYFVEDLQEFDPPN 307 (468)
Q Consensus 230 ~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~--~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~ 307 (468)
...++|+.|.+++|...............++|++|+++++..... .+.++++|+.+++....... .+
T Consensus 344 -~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~----~~------ 412 (570)
T 2z63_A 344 -VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ----MS------ 412 (570)
T ss_dssp -CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES----CT------
T ss_pred -ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccc----cc------
Confidence 345678888888764211000000011357888888887754332 26677788877765432111 00
Q ss_pred CchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEee
Q 040527 308 IPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 308 ~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
....+..+++++.|+++.+.. .......+..+++|+.|+++.+......++..+..+++|+.|++.+
T Consensus 413 -----~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 413 -----EFSVFLSLRNLIYLDISHTHT---RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479 (570)
T ss_dssp -----TSCTTTTCTTCCEEECTTSCC---EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred -----chhhhhcCCCCCEEeCcCCcc---cccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC
Confidence 001134455566666655544 2221223344555566555443221112233445556666666554
No 46
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.94 E-value=5.8e-11 Score=127.13 Aligned_cols=148 Identities=15% Similarity=0.128 Sum_probs=84.2
Q ss_pred cCceEEEEEEEecceeeecCC--CccccCccceEEecccccCCC-CCCc-ccCCcccEEEEE-EEecCcccchhhhhccC
Q 040527 134 RNVGDIELNHVYVDVLIELPD--NICTCKTLEMLKLKLDFDFKI-PTSR-ICFPSLKCLHAE-MYYPHSTCITEKLFTIC 208 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~-~~~~-~~~~~L~~L~L~-~~~~~~~~l~~~l~~~c 208 (468)
.++++|++.. ......+|. .+..+++|++|+|++|.+... |... ..+++|++|+|+ +.+.+........+.+|
T Consensus 100 ~~L~~L~Ls~--n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 100 ASLTSLDLSR--NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp TTCCEEECCS--SEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred CCCCEEECCC--CcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence 4777787762 212234666 677888999999998877543 2222 578888888888 77654321110126678
Q ss_pred CccceEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccce---EEEecCCCeeE
Q 040527 209 PVLEDLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVS---YMVHELHSLTE 285 (468)
Q Consensus 209 p~Le~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~---~~~~~~~~L~~ 285 (468)
+.|++|++.+|... +.... ...++|+.|.+++|.... .... .-..++|++|+++++.... ..+.++++|+.
T Consensus 178 ~~L~~L~Ls~n~l~--~~~~~-~~l~~L~~L~Ls~n~l~~--~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 178 GELKHLAISGNKIS--GDVDV-SRCVNLEFLDVSSNNFST--GIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251 (768)
T ss_dssp TTCCEEECCSSEEE--SCCBC-TTCTTCCEEECCSSCCCS--CCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred CCCCEEECCCCccc--ccCCc-ccCCcCCEEECcCCcCCC--CCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCE
Confidence 88888888887644 22221 234567777777765321 1111 2234666666666654321 12344455555
Q ss_pred EEEe
Q 040527 286 VHFD 289 (468)
Q Consensus 286 ~~l~ 289 (468)
+++.
T Consensus 252 L~Ls 255 (768)
T 3rgz_A 252 LNIS 255 (768)
T ss_dssp EECC
T ss_pred EECC
Confidence 5443
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.93 E-value=1.6e-10 Score=115.96 Aligned_cols=136 Identities=12% Similarity=0.049 Sum_probs=97.6
Q ss_pred hcCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCcc
Q 040527 133 ERNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVL 211 (468)
Q Consensus 133 ~~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~L 211 (468)
-..++.|++.... ...+| .+..+++|++|+|++|.+...+ ...+++|++|+|+ +.+.+. . +.+++.|
T Consensus 41 l~~L~~L~Ls~n~---l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~---~---~~~l~~L 108 (457)
T 3bz5_A 41 LATLTSLDCHNSS---ITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL---D---VTPLTKL 108 (457)
T ss_dssp HTTCCEEECCSSC---CCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC---C---CTTCTTC
T ss_pred cCCCCEEEccCCC---cccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee---e---cCCCCcC
Confidence 3678888886322 23345 5677899999999999888753 6788999999999 877652 3 6678999
Q ss_pred ceEEEeeeeccCCCeeeEEEE-cCcccEEEEeeeeecccCCceeEEE-ecCCeeEEEEecc-ccceEEEecCCCeeEEEE
Q 040527 212 EDLLIEIHLEDKHSVTNLNIS-SLTLKRLTLSLEKVLFSNTKHQVMI-RAPNLEHLCIYDD-TLVSYMVHELHSLTEVHF 288 (468)
Q Consensus 212 e~L~L~~c~~~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~i~~-~~p~L~~L~l~~~-~~~~~~~~~~~~L~~~~l 288 (468)
+.|++.+|... ++. +. .++|+.|.++.|.... +.+ ..++|++|+++++ ....+.+.++++|+.+++
T Consensus 109 ~~L~L~~N~l~--~l~---~~~l~~L~~L~l~~N~l~~------l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 177 (457)
T 3bz5_A 109 TYLNCDTNKLT--KLD---VSQNPLLTYLNCARNTLTE------IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC 177 (457)
T ss_dssp CEEECCSSCCS--CCC---CTTCTTCCEEECTTSCCSC------CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred CEEECCCCcCC--eec---CCCCCcCCEEECCCCccce------eccccCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence 99999998765 432 22 4679999998876421 222 4688999998887 344456777888888877
Q ss_pred eee
Q 040527 289 DIE 291 (468)
Q Consensus 289 ~~~ 291 (468)
...
T Consensus 178 s~n 180 (457)
T 3bz5_A 178 SFN 180 (457)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.93 E-value=1.1e-10 Score=116.98 Aligned_cols=261 Identities=15% Similarity=0.097 Sum_probs=146.8
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCC-CC--CcccCCcccEEEEE-EEecCcccchhhhhccCC
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKI-PT--SRICFPSLKCLHAE-MYYPHSTCITEKLFTICP 209 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~--~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp 209 (468)
.++++|++.. .......|..+..+++|++|+|++|.+... +. .+..+++|++|+|+ +.+.+.. -. .++.+++
T Consensus 79 ~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~-~~~~~l~ 154 (455)
T 3v47_A 79 SSLIILKLDY--NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ-PA-SFFLNMR 154 (455)
T ss_dssp TTCCEEECTT--CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC-CC-GGGGGCT
T ss_pred ccCCEEeCCC--CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC-cc-cccCCCC
Confidence 4677777652 211223355566678888888888877542 12 25677888888888 7765432 23 4477788
Q ss_pred ccceEEEeeeeccCC-----------CeeeEEE----------------------EcCcccEEEEeeeeeccc-------
Q 040527 210 VLEDLLIEIHLEDKH-----------SVTNLNI----------------------SSLTLKRLTLSLEKVLFS------- 249 (468)
Q Consensus 210 ~Le~L~L~~c~~~~~-----------~~~~~~i----------------------~~~~L~~L~l~~~~~~~~------- 249 (468)
+|++|++.+|...+. .+..+.+ ..++|+.|++++|.....
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 888888887764310 0011111 013566677766642100
Q ss_pred ----CCceeEEE--------------------------ecCCeeEEEEeccccceE---EEecCCCeeEEEEeeeeeccc
Q 040527 250 ----NTKHQVMI--------------------------RAPNLEHLCIYDDTLVSY---MVHELHSLTEVHFDIEFDKYF 296 (468)
Q Consensus 250 ----~~~~~i~~--------------------------~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~ 296 (468)
..+..+.+ ..++|+.|+++++..... .+.++++|+.+++......
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-- 312 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-- 312 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC--
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc--
Confidence 01111111 125788888888755433 2566788888887543211
Q ss_pred ccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCc
Q 040527 297 VEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLG 376 (468)
Q Consensus 297 ~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~ 376 (468)
.. ....+..+++|+.|+++.+.+ ..+....+..+++|+.|+++.+.... ..+..+..+|+|+
T Consensus 313 --~~------------~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~ 374 (455)
T 3v47_A 313 --KI------------DDNAFWGLTHLLKLNLSQNFL---GSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLK 374 (455)
T ss_dssp --EE------------CTTTTTTCTTCCEEECCSSCC---CEECGGGGTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCC
T ss_pred --cc------------ChhHhcCcccCCEEECCCCcc---CCcChhHhcCcccCCEEECCCCcccc-cChhhcccccccc
Confidence 11 112245678899999998877 43323345677889999887654321 1134467789999
Q ss_pred eEEEeeeecCCCCCCCCCCccCc---ccccceeEEEEE--eecCchHHHHHHHHHH
Q 040527 377 AMEIDFLIVGDNLRWTEPQCVPN---CLLLHVKKIEIC--GFEGLKHELELVKYLL 427 (468)
Q Consensus 377 ~L~l~~~~~~~~~~w~~~~~~~~---~~~~~L~~v~i~--~~~g~~~e~~~~~~ll 427 (468)
.|++.++ ....++. ....+|+.+.+. .+.|.-..+.+....+
T Consensus 375 ~L~L~~N---------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l 421 (455)
T 3v47_A 375 ELALDTN---------QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 421 (455)
T ss_dssp EEECCSS---------CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred EEECCCC---------ccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHH
Confidence 9999872 1111111 123678888886 3344433344443333
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.92 E-value=1.5e-09 Score=112.56 Aligned_cols=129 Identities=19% Similarity=0.122 Sum_probs=81.8
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLE 212 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le 212 (468)
.+++.|++.... ...+|. .+++|++|+|++|.+..+|. .+++|++|+|+ +.+.+ +. . .+++|+
T Consensus 61 ~~L~~L~L~~N~---l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~---l~-~---~l~~L~ 124 (622)
T 3g06_A 61 AHITTLVIPDNN---LTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH---LP-A---LPSGLC 124 (622)
T ss_dssp TTCSEEEECSCC---CSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC---CC-C---CCTTCC
T ss_pred CCCcEEEecCCC---CCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC---CC-C---CCCCcC
Confidence 578888887322 335665 45889999999998887644 78899999998 76643 33 2 567788
Q ss_pred eEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEEEecCCCeeEEEEee
Q 040527 213 DLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDI 290 (468)
Q Consensus 213 ~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~ 290 (468)
.|++.+|... .+.. ..++|+.|.+++|.... +.-..++|+.|.++++....+. ..+++|+.+++..
T Consensus 125 ~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~~------l~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~ 190 (622)
T 3g06_A 125 KLWIFGNQLT--SLPV---LPPGLQELSVSDNQLAS------LPALPSELCKLWAYNNQLTSLP-MLPSGLQELSVSD 190 (622)
T ss_dssp EEECCSSCCS--CCCC---CCTTCCEEECCSSCCSC------CCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCS
T ss_pred EEECCCCCCC--cCCC---CCCCCCEEECcCCcCCC------cCCccCCCCEEECCCCCCCCCc-ccCCCCcEEECCC
Confidence 8888887654 3222 23678888877765321 1112356666666665544433 4445566555543
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.92 E-value=7e-11 Score=110.84 Aligned_cols=196 Identities=16% Similarity=0.075 Sum_probs=88.8
Q ss_pred CccceEEecccccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeee-ccCCCeeeEEE-EcCc
Q 040527 160 KTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHL-EDKHSVTNLNI-SSLT 235 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~-~~~~~~~~~~i-~~~~ 235 (468)
++|++|+|+++.+...++ .+..+++|++|+|+ +.+.+. .. ..+.+++.|+.|++.+|. .. .+..-.+ ..++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~-~~~~~l~~L~~L~l~~n~~l~--~~~~~~~~~l~~ 106 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI--DA-AAFTGLALLEQLDLSDNAQLR--SVDPATFHGLGR 106 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE--CT-TTTTTCTTCCEEECCSCTTCC--CCCTTTTTTCTT
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee--CH-hhcCCccCCCEEeCCCCCCcc--ccCHHHhcCCcC
Confidence 456666666666555432 24556666666666 544321 12 345556666666666653 22 1100000 1245
Q ss_pred ccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEE---EecCCCeeEEEEeeeeecccccCcCCCCCCCCchhh
Q 040527 236 LKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYM---VHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADR 312 (468)
Q Consensus 236 L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 312 (468)
|+.|.++++..... .....-..++|++|+++++...... +.++++|+.+++..... ...+
T Consensus 107 L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~----------- 169 (285)
T 1ozn_A 107 LHTLHLDRCGLQEL--GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI----SSVP----------- 169 (285)
T ss_dssp CCEEECTTSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC----CEEC-----------
T ss_pred CCEEECCCCcCCEE--CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc----cccC-----------
Confidence 55555555432110 0000112355666666555332221 23344444444322110 0000
Q ss_pred HHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEee
Q 040527 313 MLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 313 ~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
...+..+++|+.|+++.+.+ .......+..+++|+.|+++.+.... .....+..+++|+.|++.+
T Consensus 170 -~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 170 -ERAFRGLHSLDRLLLHQNRV---AHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLND 234 (285)
T ss_dssp -TTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCS
T ss_pred -HHHhcCccccCEEECCCCcc---cccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccC
Confidence 01234456666677666655 33322234456666666665543211 1224456667777776665
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.91 E-value=5.6e-11 Score=125.60 Aligned_cols=121 Identities=14% Similarity=0.097 Sum_probs=56.7
Q ss_pred cCCeeEEEEeccccce----EEEecCCCeeEEEEeeeeec----ccccCcCCCCCCCCch------hhHHHHhhhcCcee
Q 040527 259 APNLEHLCIYDDTLVS----YMVHELHSLTEVHFDIEFDK----YFVEDLQEFDPPNIPA------DRMLQLLKGITNTR 324 (468)
Q Consensus 259 ~p~L~~L~l~~~~~~~----~~~~~~~~L~~~~l~~~~~~----~~~~~~~~l~~~~~~~------~~~~~~l~~~~~l~ 324 (468)
.++|+.|+++++.... ..+.++++|+.+++...... ..+..+|.|+.+.+.. ......+..+++++
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 4667777776654321 23455666666666443211 1233344444433311 11122345566677
Q ss_pred EEEEecccccccccccccCCCCCCCcceEEEEEecCCc---hh----HHHHHhcCCCCceEEEee
Q 040527 325 FLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGF---RL----LPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 325 ~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~---~~----l~~ll~~~p~L~~L~l~~ 382 (468)
.|+++.+.+ ..+....+..+++|+.|+++.+.... .. ....+.++++|+.|++++
T Consensus 484 ~L~Ls~N~l---~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 545 (680)
T 1ziw_A 484 ILDLSNNNI---ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545 (680)
T ss_dssp EEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS
T ss_pred EEECCCCCC---CcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC
Confidence 777766655 33322234455566666665442211 00 011245556666666655
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.91 E-value=5.9e-11 Score=123.62 Aligned_cols=257 Identities=12% Similarity=0.062 Sum_probs=150.9
Q ss_pred ccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEE-Ec
Q 040527 156 ICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNI-SS 233 (468)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i-~~ 233 (468)
+..+++|+.|++.++.+...+ ....+++|++|+++ +.+. .+. .+ .+|.|++|++.+|... ..+.+ ..
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~---~lp-~~--~l~~L~~L~l~~n~~~----~~~~~~~l 349 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLK---QFP-TL--DLPFLKSLTLTMNKGS----ISFKKVAL 349 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCS---SCC-CC--CCSSCCEEEEESCSSC----EECCCCCC
T ss_pred cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCc---ccc-cC--CCCccceeeccCCcCc----cchhhccC
Confidence 455688999999998887764 67788899999999 8773 244 44 7889999999888522 22222 35
Q ss_pred CcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceE--EEecCCCeeEEEEeeeeecc-----cccCcCCCCCC
Q 040527 234 LTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY--MVHELHSLTEVHFDIEFDKY-----FVEDLQEFDPP 306 (468)
Q Consensus 234 ~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~--~~~~~~~L~~~~l~~~~~~~-----~~~~~~~l~~~ 306 (468)
++|+.|.+++|...............++|++|+++++..... .+.++++|+.+++....... .+..++.|+.+
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 678888888875311000001112457888888888755433 35667888888776443211 23345555554
Q ss_pred CCchh----hHHHHhhhcCceeEEEEeccccccccc-ccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEe
Q 040527 307 NIPAD----RMLQLLKGITNTRFLSLSAGIISALDC-AFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEID 381 (468)
Q Consensus 307 ~~~~~----~~~~~l~~~~~l~~L~l~~~~~~~~~~-l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~ 381 (468)
.+... .....+..+++++.|+++.+.+ .. .....+..+++|+.|+++.+... ...+..+..+++|+.|+++
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSF---KDNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEE---GGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECC
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcC---CCcchHHhhccCCCCCEEECCCCcCC-ccChhhhcccccCCEEECC
Confidence 44111 1223356677788888877766 32 11224556778888887655322 1123345677888888887
Q ss_pred eeecCCCCCCCCCCcc-Ccc--cccceeEEEEEeecCchHHHHHHHHHHhcCc-ccceEEEEec
Q 040527 382 FLIVGDNLRWTEPQCV-PNC--LLLHVKKIEICGFEGLKHELELVKYLLKNSE-VLDKMIIRSM 441 (468)
Q Consensus 382 ~~~~~~~~~w~~~~~~-~~~--~~~~L~~v~i~~~~g~~~e~~~~~~ll~~a~-~L~~l~i~~~ 441 (468)
++ ..... +.. -..+|+.+.+.+..-. .+-.. +...+ .|+.+.+...
T Consensus 506 ~N---------~l~~~~~~~~~~l~~L~~L~l~~N~l~----~~p~~-~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 506 HN---------NLLFLDSSHYNQLYSLSTLDCSFNRIE----TSKGI-LQHFPKSLAFFNLTNN 555 (606)
T ss_dssp SS---------CCSCEEGGGTTTCTTCCEEECTTSCCC----CEESC-GGGSCTTCCEEECCSC
T ss_pred CC---------cCCCcCHHHccCCCcCCEEECCCCcCc----ccCHh-HhhhcccCcEEEccCC
Confidence 62 11111 111 1357888777533211 01111 45555 5999988763
No 53
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.90 E-value=8.8e-10 Score=112.53 Aligned_cols=121 Identities=15% Similarity=0.068 Sum_probs=65.7
Q ss_pred cCceEEEEEEEecceeeecC-CCccccCccceEEecccccCCC-CCCcccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIELP-DNICTCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
..+++|++.... ...++ ..+..+++|++|+|++|.+... |..+.++++|++|+|+ +.+.+ +. .. .+++
T Consensus 21 ~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---lp-~~--~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQNY---ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK---IS-CH--PTVN 91 (520)
T ss_dssp TTCSEEECCSSC---CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE---EE-CC--CCCC
T ss_pred ccccEEECCCCc---ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee---cC-cc--ccCC
Confidence 466666665211 22233 2344567777777777776655 3345667777777777 66542 33 22 6777
Q ss_pred cceEEEeeeeccCCCeee--EEEEcCcccEEEEeeeeecccCCceeEEEecCCe--eEEEEecc
Q 040527 211 LEDLLIEIHLEDKHSVTN--LNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNL--EHLCIYDD 270 (468)
Q Consensus 211 Le~L~L~~c~~~~~~~~~--~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L--~~L~l~~~ 270 (468)
|++|+|.+|... ++.. .--..++|+.|.++++.... .. ....++| +.|+++++
T Consensus 92 L~~L~L~~N~l~--~~~~p~~~~~l~~L~~L~L~~n~l~~-~~----~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 92 LKHLDLSFNAFD--ALPICKEFGNMSQLKFLGLSTTHLEK-SS----VLPIAHLNISKVLLVLG 148 (520)
T ss_dssp CSEEECCSSCCS--SCCCCGGGGGCTTCCEEEEEESSCCG-GG----GGGGTTSCEEEEEEEEC
T ss_pred ccEEeccCCccc--cccchhhhccCCcceEEEecCcccch-hh----ccccccceeeEEEeecc
Confidence 777777777644 2110 01123567777777765321 00 0123445 77776664
No 54
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.90 E-value=2.6e-09 Score=109.71 Aligned_cols=241 Identities=16% Similarity=0.117 Sum_probs=142.9
Q ss_pred eeecCCCccccCccceEEecccccCCCC-CCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCe
Q 040527 149 LIELPDNICTCKTLEMLKLKLDFDFKIP-TSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSV 226 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~ 226 (468)
...+|..++ ++|++|+|++|.+...+ ..+.++++|++|+|+ +.+.+. .. ..+.++++|++|++.+|... ++
T Consensus 17 l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~-~~~~~l~~L~~L~Ls~n~l~--~~ 89 (549)
T 2z81_A 17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI--EG-DAFYSLGSLEHLDLSDNHLS--SL 89 (549)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE--CT-TTTTTCTTCCEEECTTSCCC--SC
T ss_pred cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc--Ch-hhccccccCCEEECCCCccC--cc
Confidence 456676554 78999999999987763 457889999999999 877642 23 56788999999999999755 32
Q ss_pred eeEEE-EcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEEEecCCCeeEEEEeeeeecccccCcCCCCC
Q 040527 227 TNLNI-SSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDIEFDKYFVEDLQEFDP 305 (468)
Q Consensus 227 ~~~~i-~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~ 305 (468)
..-.+ ..++|+.|++++|..... ......-..++|++|+++++... +..|.
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~~~------------------------~~~~~--- 141 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTL-GVTSLFPNLTNLQTLRIGNVETF------------------------SEIRR--- 141 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSS-CSSCSCTTCTTCCEEEEEESSSC------------------------CEECT---
T ss_pred CHHHhccCCCCcEEECCCCccccc-chhhhhhccCCccEEECCCCccc------------------------cccCH---
Confidence 22111 235688888877753210 00111123466777766665310 01110
Q ss_pred CCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEeeeec
Q 040527 306 PNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDFLIV 385 (468)
Q Consensus 306 ~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 385 (468)
..+..+++++.|+++.+.+ .......+..+++|++|+++.+.... .-..++..+++|+.|++.++..
T Consensus 142 ---------~~~~~l~~L~~L~L~~n~l---~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 142 ---------IDFAGLTSLNELEIKALSL---RNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp ---------TTTTTCCEEEEEEEEETTC---CEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBC
T ss_pred ---------hhhhcccccCeeeccCCcc---cccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCcc
Confidence 1245678889999988877 43323345677788888887654322 1223456789999999987221
Q ss_pred CCCCCCCCCCccCcccccceeEEEEEeecCchHHHHHHHHHHhcCcccceEEEEe
Q 040527 386 GDNLRWTEPQCVPNCLLLHVKKIEICGFEGLKHELELVKYLLKNSEVLDKMIIRS 440 (468)
Q Consensus 386 ~~~~~w~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~i~~ 440 (468)
... .... ..+ .....+|+.+.+.+..-......-+...+.+.+.|+.+.+..
T Consensus 209 ~~~-~~~~-~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 209 ARF-QFSP-LPV-DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp TTC-CCCC-CSS-CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred ccc-cccc-cch-hhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 110 0000 000 112357788877654433333333333455666677666654
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.89 E-value=3e-11 Score=116.06 Aligned_cols=269 Identities=12% Similarity=0.033 Sum_probs=135.6
Q ss_pred ecCCCccccCccceEEecccccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeee
Q 040527 151 ELPDNICTCKTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTN 228 (468)
Q Consensus 151 ~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~ 228 (468)
.+|..++ ++|++|+|++|.+...++ .+..+++|++|+|+ +.+.+. .. ..+.++++|++|++.+|... .+..
T Consensus 47 ~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~~~l~~L~~L~L~~n~l~--~l~~ 119 (332)
T 2ft3_A 47 AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI--HE-KAFSPLRKLQKLYISKNHLV--EIPP 119 (332)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE--CG-GGSTTCTTCCEEECCSSCCC--SCCS
T ss_pred ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc--CH-hHhhCcCCCCEEECCCCcCC--ccCc
Confidence 4554432 567777777776665533 45667777777777 655431 12 44666777777777776543 2211
Q ss_pred EEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccce--E---EEecCCCeeEEEEeeeeecc-cccCcCC
Q 040527 229 LNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVS--Y---MVHELHSLTEVHFDIEFDKY-FVEDLQE 302 (468)
Q Consensus 229 ~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~--~---~~~~~~~L~~~~l~~~~~~~-~~~~~~~ 302 (468)
.. .++|+.|.++++..... .....-..++|+.|+++++.... . .+.++ +|+.+++....... ...-.+.
T Consensus 120 ~~--~~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~ 194 (332)
T 2ft3_A 120 NL--PSSLVELRIHDNRIRKV--PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPET 194 (332)
T ss_dssp SC--CTTCCEEECCSSCCCCC--CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSS
T ss_pred cc--cccCCEEECCCCccCcc--CHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCC
Confidence 10 15677777776643210 00011234667777776654321 1 11222 44444333221100 0000123
Q ss_pred CCCCCCchhh----HHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceE
Q 040527 303 FDPPNIPADR----MLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAM 378 (468)
Q Consensus 303 l~~~~~~~~~----~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L 378 (468)
|+.+.+.... ....+..+++++.|+++.+.+ ..+....+..+++|+.|+++.+... .++.-+..+++|+.|
T Consensus 195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L 269 (332)
T 2ft3_A 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI---RMIENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVV 269 (332)
T ss_dssp CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC---CCCCTTGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEE
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC---CcCChhHhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEE
Confidence 4333331111 112345678888888888877 4332224557788899988765432 333346788999999
Q ss_pred EEeee-ecCCCCC-CCCCCccCcccccceeEEEEEeecCchHHHHHHHHHHhcCcccceEEEEe
Q 040527 379 EIDFL-IVGDNLR-WTEPQCVPNCLLLHVKKIEICGFEGLKHELELVKYLLKNSEVLDKMIIRS 440 (468)
Q Consensus 379 ~l~~~-~~~~~~~-w~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~i~~ 440 (468)
+++++ ...-+.. +... .+......|+.+.+.+-.... ..+....+...+.|+.+.+..
T Consensus 270 ~l~~N~l~~~~~~~~~~~--~~~~~~~~l~~L~l~~N~~~~--~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 270 YLHTNNITKVGVNDFCPV--GFGVKRAYYNGISLFNNPVPY--WEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp ECCSSCCCBCCTTSSSCS--SCCSSSCCBSEEECCSSSSCG--GGSCGGGGTTBCCSTTEEC--
T ss_pred ECCCCCCCccChhHcccc--ccccccccccceEeecCcccc--cccCcccccccchhhhhhccc
Confidence 99872 2211110 1110 011123567777776433221 112223467778888877643
No 56
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.89 E-value=5.7e-10 Score=105.87 Aligned_cols=186 Identities=13% Similarity=0.072 Sum_probs=105.7
Q ss_pred hcCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCcc
Q 040527 133 ERNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVL 211 (468)
Q Consensus 133 ~~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~L 211 (468)
-.++++|++.... ...+| .+..+++|++|+|++|.+...++ ...+++|++|+|+ +.+.+. . -+..++.|
T Consensus 40 l~~L~~L~l~~~~---i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~---~--~~~~l~~L 109 (308)
T 1h6u_A 40 LDGITTLSAFGTG---VTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV---S--AIAGLQSI 109 (308)
T ss_dssp HHTCCEEECTTSC---CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC---G--GGTTCTTC
T ss_pred cCCcCEEEeeCCC---ccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc---h--hhcCCCCC
Confidence 3577777765221 23344 35567888888888887776644 6778888888888 776542 2 25567888
Q ss_pred ceEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEEEecCCCeeEEEEeee
Q 040527 212 EDLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDIE 291 (468)
Q Consensus 212 e~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~ 291 (468)
+.|++.+|... ++..+ ...++|+.|.+++|.... ... .-..++|+.|+++++......
T Consensus 110 ~~L~l~~n~l~--~~~~l-~~l~~L~~L~l~~n~l~~---~~~-l~~l~~L~~L~l~~n~l~~~~--------------- 167 (308)
T 1h6u_A 110 KTLDLTSTQIT--DVTPL-AGLSNLQVLYLDLNQITN---ISP-LAGLTNLQYLSIGNAQVSDLT--------------- 167 (308)
T ss_dssp CEEECTTSCCC--CCGGG-TTCTTCCEEECCSSCCCC---CGG-GGGCTTCCEEECCSSCCCCCG---------------
T ss_pred CEEECCCCCCC--Cchhh-cCCCCCCEEECCCCccCc---Ccc-ccCCCCccEEEccCCcCCCCh---------------
Confidence 88888887655 33221 123567777777665321 111 113456666666555332110
Q ss_pred eecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhc
Q 040527 292 FDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRS 371 (468)
Q Consensus 292 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~ 371 (468)
. +..+++|+.|+++.+.+ ..+. .+..+++|++|+++.+.... +.. +..
T Consensus 168 -------------------~-----l~~l~~L~~L~l~~n~l---~~~~--~l~~l~~L~~L~L~~N~l~~--~~~-l~~ 215 (308)
T 1h6u_A 168 -------------------P-----LANLSKLTTLKADDNKI---SDIS--PLASLPNLIEVHLKNNQISD--VSP-LAN 215 (308)
T ss_dssp -------------------G-----GTTCTTCCEEECCSSCC---CCCG--GGGGCTTCCEEECTTSCCCB--CGG-GTT
T ss_pred -------------------h-----hcCCCCCCEEECCCCcc---CcCh--hhcCCCCCCEEEccCCccCc--ccc-ccC
Confidence 0 44566666666666655 2221 13455666666665543321 111 466
Q ss_pred CCCCceEEEee
Q 040527 372 LPNLGAMEIDF 382 (468)
Q Consensus 372 ~p~L~~L~l~~ 382 (468)
+|+|+.|++++
T Consensus 216 l~~L~~L~l~~ 226 (308)
T 1h6u_A 216 TSNLFIVTLTN 226 (308)
T ss_dssp CTTCCEEEEEE
T ss_pred CCCCCEEEccC
Confidence 77777777776
No 57
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.88 E-value=9.4e-10 Score=100.27 Aligned_cols=200 Identities=13% Similarity=0.099 Sum_probs=111.2
Q ss_pred eeecCCCccccCccceEEecccccCCCCC-CcccCCcccEEEEE-EE-ecCcccchhhhhccCCccceEEEeeee-ccCC
Q 040527 149 LIELPDNICTCKTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MY-YPHSTCITEKLFTICPVLEDLLIEIHL-EDKH 224 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~-~~~~~~l~~~l~~~cp~Le~L~L~~c~-~~~~ 224 (468)
...+|. + .++|+.|+|+++.+...++ .+.++++|++|+|+ +. +.. +....+.++++|+.|++.+|+ ..
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~---i~~~~f~~l~~L~~L~l~~~n~l~-- 94 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ---LESHSFYNLSKVTHIEIRNTRNLT-- 94 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE---ECTTTEESCTTCCEEEEEEETTCC--
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce---eCHhHcCCCcCCcEEECCCCCCee--
Confidence 344555 2 2489999999998887744 46788999999999 75 542 221457889999999999843 32
Q ss_pred CeeeE-EEEcCcccEEEEeeeeecccCCceeEEEecCCee---EEEEecc-ccceEEEecCCCeeEEEEeeeeecccccC
Q 040527 225 SVTNL-NISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLE---HLCIYDD-TLVSYMVHELHSLTEVHFDIEFDKYFVED 299 (468)
Q Consensus 225 ~~~~~-~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~---~L~l~~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~ 299 (468)
.+..- ....++|+.|.+.+|.... ... ....++|+ +|+++++ ....+.
T Consensus 95 ~i~~~~f~~l~~L~~L~l~~n~l~~---lp~-~~~l~~L~~L~~L~l~~N~~l~~i~----------------------- 147 (239)
T 2xwt_C 95 YIDPDALKELPLLKFLGIFNTGLKM---FPD-LTKVYSTDIFFILEITDNPYMTSIP----------------------- 147 (239)
T ss_dssp EECTTSEECCTTCCEEEEEEECCCS---CCC-CTTCCBCCSEEEEEEESCTTCCEEC-----------------------
T ss_pred EcCHHHhCCCCCCCEEeCCCCCCcc---ccc-cccccccccccEEECCCCcchhhcC-----------------------
Confidence 22111 1134678888888875321 111 11234454 6666665 332111
Q ss_pred cCCCCCCCCchhhHHHHhhhcCcee-EEEEecccccccccccccCCCCCCCcceEEEEEecCCchhH-HHHHhcC-CCCc
Q 040527 300 LQEFDPPNIPADRMLQLLKGITNTR-FLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLL-PIILRSL-PNLG 376 (468)
Q Consensus 300 ~~~l~~~~~~~~~~~~~l~~~~~l~-~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l-~~ll~~~-p~L~ 376 (468)
...+..+++++ .|+++.+.+ ..+....+.. ++|+.|+++.+.. ...+ ...+.++ ++|+
T Consensus 148 --------------~~~~~~l~~L~~~L~l~~n~l---~~i~~~~~~~-~~L~~L~L~~n~~-l~~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 148 --------------VNAFQGLCNETLTLKLYNNGF---TSVQGYAFNG-TKLDAVYLNKNKY-LTVIDKDAFGGVYSGPS 208 (239)
T ss_dssp --------------TTTTTTTBSSEEEEECCSCCC---CEECTTTTTT-CEEEEEECTTCTT-CCEECTTTTTTCSBCCS
T ss_pred --------------cccccchhcceeEEEcCCCCC---cccCHhhcCC-CCCCEEEcCCCCC-cccCCHHHhhccccCCc
Confidence 01134566677 777776665 3332212222 5666666654420 1111 2335566 7888
Q ss_pred eEEEeeeecCCCCCCCCCCccCcccccceeEEEEE
Q 040527 377 AMEIDFLIVGDNLRWTEPQCVPNCLLLHVKKIEIC 411 (468)
Q Consensus 377 ~L~l~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i~ 411 (468)
.|++.. +....++.....+|+.+.+.
T Consensus 209 ~L~l~~---------N~l~~l~~~~~~~L~~L~l~ 234 (239)
T 2xwt_C 209 LLDVSQ---------TSVTALPSKGLEHLKELIAR 234 (239)
T ss_dssp EEECTT---------CCCCCCCCTTCTTCSEEECT
T ss_pred EEECCC---------CccccCChhHhccCceeecc
Confidence 888765 22222333344566666653
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.85 E-value=2.3e-10 Score=109.82 Aligned_cols=200 Identities=11% Similarity=0.015 Sum_probs=97.2
Q ss_pred CCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEE
Q 040527 153 PDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNI 231 (468)
Q Consensus 153 p~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i 231 (468)
|..+..+++|++|+|++|.+...|... +++|++|+|+ +.+... .. ..+.++++|+.|++.+|.....+.....+
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~~l~~~~--~~~L~~L~l~~n~i~~~--~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 169 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKV--PK-GVFSGLRNMNCIEMGGNPLENSGFEPGAF 169 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCCSCCSSC--CTTCCEEECCSSCCCCC--CS-GGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred HhHhhCcCCCCEEECCCCcCCccCccc--cccCCEEECCCCccCcc--CH-hHhCCCccCCEEECCCCccccCCCCcccc
Confidence 334445566666666666665543322 2566666666 555431 12 34566666666666666532000111111
Q ss_pred EcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEE---EecCCCeeEEEEeeeeecccccCcCCCCCCCC
Q 040527 232 SSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYM---VHELHSLTEVHFDIEFDKYFVEDLQEFDPPNI 308 (468)
Q Consensus 232 ~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~ 308 (468)
...+|+.|.++++....... . ..++|++|+++++...... +.++++|+.+++.....
T Consensus 170 ~~l~L~~L~l~~n~l~~l~~--~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l--------------- 229 (332)
T 2ft3_A 170 DGLKLNYLRISEAKLTGIPK--D---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI--------------- 229 (332)
T ss_dssp CSCCCSCCBCCSSBCSSCCS--S---SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC---------------
T ss_pred cCCccCEEECcCCCCCccCc--c---ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC---------------
Confidence 11256666666654221000 0 1156666666665433221 33444444444332110
Q ss_pred chhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCc---hhHHH--HHhcCCCCceEEEee
Q 040527 309 PADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGF---RLLPI--ILRSLPNLGAMEIDF 382 (468)
Q Consensus 309 ~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~---~~l~~--ll~~~p~L~~L~l~~ 382 (468)
.......+..+++++.|+++.+.+ ..+ ...+..+++|+.|+++.+.... ..+.. .....++|+.|++.+
T Consensus 230 -~~~~~~~~~~l~~L~~L~L~~N~l---~~l-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 230 -RMIENGSLSFLPTLRELHLDNNKL---SRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp -CCCCTTGGGGCTTCCEEECCSSCC---CBC-CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred -CcCChhHhhCCCCCCEEECCCCcC---eec-ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence 001112356778888888888877 433 1235567788888887654321 11100 011246778888776
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.85 E-value=6.5e-10 Score=111.46 Aligned_cols=192 Identities=16% Similarity=0.132 Sum_probs=133.3
Q ss_pred cCceEEEEEEEecceeeecC-CCccccCccceEEecccccCCCCCC-cccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIELP-DNICTCKTLEMLKLKLDFDFKIPTS-RICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
.+++.|++... . ...++ ..+..+++|++|+|++|.+...++. +.++++|++|+|+ +.+... -. ..+.++|+
T Consensus 99 ~~L~~L~Ls~n--~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~-~~~~~l~~ 172 (452)
T 3zyi_A 99 HHLEVLQLGRN--S-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI--PS-YAFNRVPS 172 (452)
T ss_dssp TTCCEEECCSS--C-CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE--CT-TTTTTCTT
T ss_pred CCCCEEECCCC--c-cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee--CH-hHHhcCCc
Confidence 57888888732 2 22333 4566789999999999999877554 6789999999999 887632 23 56889999
Q ss_pred cceEEEeeeeccCCCeeeEEE----EcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceE---EEecCCCe
Q 040527 211 LEDLLIEIHLEDKHSVTNLNI----SSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY---MVHELHSL 283 (468)
Q Consensus 211 Le~L~L~~c~~~~~~~~~~~i----~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~---~~~~~~~L 283 (468)
|+.|+|.+|+ .+..+.. ..++|+.|.+++|.... ... ....++|++|+++++..... .+.++++|
T Consensus 173 L~~L~l~~~~----~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 173 LMRLDLGELK----KLEYISEGAFEGLFNLKYLNLGMCNIKD---MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244 (452)
T ss_dssp CCEEECCCCT----TCCEECTTTTTTCTTCCEEECTTSCCSS---CCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred ccEEeCCCCC----CccccChhhccCCCCCCEEECCCCcccc---ccc-ccccccccEEECcCCcCcccCcccccCccCC
Confidence 9999999976 3333332 24679999999986432 111 22458899999998866544 35667788
Q ss_pred eEEEEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEe
Q 040527 284 TEVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIE 358 (468)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~ 358 (468)
+.+++...... . .....+..+++|+.|+++.+.+ ..+....+..+++|+.|+|+.+
T Consensus 245 ~~L~L~~n~l~----~------------~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 245 KKLWVMNSQVS----L------------IERNAFDGLASLVELNLAHNNL---SSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CEEECTTSCCC----E------------ECTTTTTTCTTCCEEECCSSCC---SCCCTTSSTTCTTCCEEECCSS
T ss_pred CEEEeCCCcCc----e------------ECHHHhcCCCCCCEEECCCCcC---CccChHHhccccCCCEEEccCC
Confidence 87776433211 0 0112346788999999999887 5443344567888999998764
No 60
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.85 E-value=1.9e-08 Score=103.60 Aligned_cols=82 Identities=17% Similarity=0.074 Sum_probs=51.1
Q ss_pred cCceEEEEEEEecceeeec-CCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCcc
Q 040527 134 RNVGDIELNHVYVDVLIEL-PDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVL 211 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~L 211 (468)
.+++.|++... . ...+ |..+..+++|++|+|++|.+...|.. .+++|++|+|+ +.+.+.. +. ..+.++++|
T Consensus 76 ~~L~~L~Ls~N--~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~-~p-~~~~~l~~L 148 (562)
T 3a79_B 76 SELRVLRLSHN--R-IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLP-VC-KEFGNLTKL 148 (562)
T ss_dssp TTCCEEECCSC--C-CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCC-CC-GGGGGCTTC
T ss_pred CCccEEECCCC--C-CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccC-ch-HhhcccCcc
Confidence 46677776522 1 2233 44455567777777777777665443 67777777777 7665422 33 346677777
Q ss_pred ceEEEeeeecc
Q 040527 212 EDLLIEIHLED 222 (468)
Q Consensus 212 e~L~L~~c~~~ 222 (468)
+.|++.++...
T Consensus 149 ~~L~L~~n~l~ 159 (562)
T 3a79_B 149 TFLGLSAAKFR 159 (562)
T ss_dssp CEEEEECSBCC
T ss_pred cEEecCCCccc
Confidence 77777777643
No 61
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.84 E-value=3.7e-09 Score=109.00 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=55.2
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCC--CCcccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIP--TSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
..+++|++.. . ....+|.. .+++|++|+|++|.+...+ ..+.++++|++|+|+ +.+.... +.+++.
T Consensus 100 ~~L~~L~Ls~--N-~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~------~~~l~~ 168 (562)
T 3a79_B 100 QDLEYLDVSH--N-RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD------LLPVAH 168 (562)
T ss_dssp TTCCEEECTT--S-CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT------TGGGTT
T ss_pred CCCCEEECCC--C-cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc------hhhhhh
Confidence 5788888863 2 23467766 7889999999999887653 457789999999999 8776422 334445
Q ss_pred c--ceEEEeeeec
Q 040527 211 L--EDLLIEIHLE 221 (468)
Q Consensus 211 L--e~L~L~~c~~ 221 (468)
| +.|++.+|..
T Consensus 169 L~L~~L~L~~n~l 181 (562)
T 3a79_B 169 LHLSCILLDLVSY 181 (562)
T ss_dssp SCEEEEEEEESSC
T ss_pred ceeeEEEeecccc
Confidence 5 8888888754
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.83 E-value=1.6e-10 Score=110.17 Aligned_cols=236 Identities=13% Similarity=0.117 Sum_probs=136.9
Q ss_pred HHHHHHHHHh--cCceEEEEEEEecceeeecC-CCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCccc
Q 040527 124 LKSWVSSAIE--RNVGDIELNHVYVDVLIELP-DNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTC 199 (468)
Q Consensus 124 ~~~wl~~~~~--~~l~~L~l~~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~ 199 (468)
+...+..... .++++|++... . ...++ ..+..+++|++|+|++|.+...++ +..+++|++|+|+ +.+.+
T Consensus 22 l~~~~~~~~~~~~~L~~L~L~~n--~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~--- 94 (317)
T 3o53_A 22 LKQALASLRQSAWNVKELDLSGN--P-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE--- 94 (317)
T ss_dssp HHHHHHHHHTTGGGCSEEECTTS--C-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE---
T ss_pred hhhhHHHHhccCCCCCEEECcCC--c-cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc---
Confidence 3344443332 46777777622 1 22233 345567888888888888765533 6788888888888 76642
Q ss_pred chhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEE-EecCCeeEEEEeccccceEEE-
Q 040527 200 ITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVM-IRAPNLEHLCIYDDTLVSYMV- 277 (468)
Q Consensus 200 l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~-~~~p~L~~L~l~~~~~~~~~~- 277 (468)
+. .+|.|+.|++.+|... ++. ....++|+.|.+++|.... ..... ...++|++|+++++.......
T Consensus 95 l~-----~~~~L~~L~l~~n~l~--~~~--~~~~~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 95 LL-----VGPSIETLHAANNNIS--RVS--CSRGQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp EE-----ECTTCCEEECCSSCCS--EEE--ECCCSSCEEEECCSSCCCS---GGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred cc-----CCCCcCEEECCCCccC--CcC--ccccCCCCEEECCCCCCCC---ccchhhhccCCCCEEECCCCCCCcccHH
Confidence 22 3478888888887644 211 1224568888887775321 11111 135777777777765544332
Q ss_pred ---ecCCCeeEEEEeeeeecc--cccCcCCCCCCCCchh---hHHHHhhhcCceeEEEEecccccccccccccCCCCCCC
Q 040527 278 ---HELHSLTEVHFDIEFDKY--FVEDLQEFDPPNIPAD---RMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPY 349 (468)
Q Consensus 278 ---~~~~~L~~~~l~~~~~~~--~~~~~~~l~~~~~~~~---~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~ 349 (468)
.++++|+.+++....... ....+++|+.+.+... .+..-+..+++++.|+++.+.+ ..+ ...+..+++
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l---~~l-~~~~~~l~~ 238 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL---VLI-EKALRFSQN 238 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC---CEE-CTTCCCCTT
T ss_pred HHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcc---cch-hhHhhcCCC
Confidence 245677777665432111 1112444444333111 1111156677888888888877 433 223556778
Q ss_pred cceEEEEEecCCchhHHHHHhcCCCCceEEEee
Q 040527 350 LTYLKVEIEESGFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 350 L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
|+.|+++.+......++..+..+|+|+.|++..
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 888888765444356677778888888887774
No 63
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.82 E-value=8.8e-10 Score=103.61 Aligned_cols=174 Identities=16% Similarity=0.065 Sum_probs=105.0
Q ss_pred ccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcC
Q 040527 156 ICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSL 234 (468)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~ 234 (468)
+..+++++.+++.++.+..+|+.. .++|+.|+|+ +.+.+. .. ..+.+++.|+.|+|.++... .+... ...+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~--~~-~~~~~l~~L~~L~L~~n~l~--~~~~~-~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTF--SL-ATLMPYTRLTQLNLDRAELT--KLQVD-GTLP 77 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEE--EG-GGGTTCTTCCEEECTTSCCC--EEECC-SCCT
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCcc--CH-HHhhcCCCCCEEECCCCccC--cccCC-CCCC
Confidence 345678999999999888775433 4789999999 877542 23 56788999999999998754 32222 2345
Q ss_pred cccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEEEecCCCeeEEEEeeeeecccccCcCCCCCCCCchhhHH
Q 040527 235 TLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADRML 314 (468)
Q Consensus 235 ~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 314 (468)
+|+.|.++++... .........++|++|+++++....+. .
T Consensus 78 ~L~~L~Ls~N~l~---~l~~~~~~l~~L~~L~l~~N~l~~l~-------------------------------------~ 117 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLP-------------------------------------L 117 (290)
T ss_dssp TCCEEECCSSCCS---SCCCCTTTCTTCCEEECCSSCCCCCC-------------------------------------S
T ss_pred cCCEEECCCCcCC---cCchhhccCCCCCEEECCCCcCcccC-------------------------------------H
Confidence 6888888776532 11111123466777777665432111 0
Q ss_pred HHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhH-HHHHhcCCCCceEEEee
Q 040527 315 QLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLL-PIILRSLPNLGAMEIDF 382 (468)
Q Consensus 315 ~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l-~~ll~~~p~L~~L~l~~ 382 (468)
..+..+++|+.|+++.+.+ ..+....+..+++|+.|+++.+... .+ ..++..+++|+.|++..
T Consensus 118 ~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 118 GALRGLGELQELYLKGNEL---KTLPPGLLTPTPKLEKLSLANNNLT--ELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp STTTTCTTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECTTSCCS--CCCTTTTTTCTTCCEEECCS
T ss_pred HHHcCCCCCCEEECCCCCC---CccChhhcccccCCCEEECCCCcCC--ccCHHHhcCcCCCCEEECCC
Confidence 1134566677777777666 3332233445666777766543221 12 23455677777777765
No 64
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.82 E-value=8.9e-10 Score=105.57 Aligned_cols=216 Identities=11% Similarity=0.068 Sum_probs=123.5
Q ss_pred cCceEEEEEEEecceeeec-CCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCcc
Q 040527 134 RNVGDIELNHVYVDVLIEL-PDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVL 211 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~L 211 (468)
.++++|++.. .. ...+ |..+..+++|++|+|++|.+...|.. .+++|++|+++ +.+.+. .. ..+.+++.|
T Consensus 76 ~~L~~L~L~~--n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~--~~~~L~~L~l~~n~l~~~--~~-~~~~~l~~L 147 (330)
T 1xku_A 76 KNLHTLILIN--NK-ISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVHENEITKV--RK-SVFNGLNQM 147 (330)
T ss_dssp TTCCEEECCS--SC-CCCBCTTTTTTCTTCCEEECCSSCCSBCCSS--CCTTCCEEECCSSCCCBB--CH-HHHTTCTTC
T ss_pred CCCCEEECCC--Cc-CCeeCHHHhcCCCCCCEEECCCCcCCccChh--hcccccEEECCCCccccc--CH-hHhcCCccc
Confidence 4677777652 21 2223 55566677888888888777665332 23778888887 766532 23 557778888
Q ss_pred ceEEEeeeeccCCCeeeEEE-EcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceE---EEecCCCeeEEE
Q 040527 212 EDLLIEIHLEDKHSVTNLNI-SSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY---MVHELHSLTEVH 287 (468)
Q Consensus 212 e~L~L~~c~~~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~ 287 (468)
+.|++.+|.....+.....+ ..++|+.|.++++....... . ..++|++|+++++..... .+.++++|+.++
T Consensus 148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 222 (330)
T 1xku_A 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--G---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222 (330)
T ss_dssp CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS--S---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEE
T ss_pred cEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc--c---ccccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 88888887643000111011 24578888888775321110 0 127888888887755443 245667777777
Q ss_pred EeeeeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCc---hh
Q 040527 288 FDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGF---RL 364 (468)
Q Consensus 288 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~---~~ 364 (468)
+...... .. ....+..+++++.|+++.+.+ ..+ ...+..+++|+.|+++.+.... ..
T Consensus 223 Ls~n~l~----~~------------~~~~~~~l~~L~~L~L~~N~l---~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 223 LSFNSIS----AV------------DNGSLANTPHLRELHLNNNKL---VKV-PGGLADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp CCSSCCC----EE------------CTTTGGGSTTCCEEECCSSCC---SSC-CTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred CCCCcCc----ee------------ChhhccCCCCCCEEECCCCcC---ccC-ChhhccCCCcCEEECCCCcCCccChhh
Confidence 6533211 10 012346678888888888877 333 1235567788888887654311 11
Q ss_pred HH--HHHhcCCCCceEEEee
Q 040527 365 LP--IILRSLPNLGAMEIDF 382 (468)
Q Consensus 365 l~--~ll~~~p~L~~L~l~~ 382 (468)
.. ......+.|+.|++.+
T Consensus 283 f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 283 FCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp SSCSSCCTTSCCCSEEECCS
T ss_pred cCCcccccccccccceEeec
Confidence 10 0112246777887775
No 65
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.80 E-value=3.3e-11 Score=118.33 Aligned_cols=137 Identities=13% Similarity=0.172 Sum_probs=73.7
Q ss_pred cCceEEEEEEEecc--eeeecCCCccccCccceEEecccccCCC----CCCc-------ccCCcccEEEEE-EEecCcc-
Q 040527 134 RNVGDIELNHVYVD--VLIELPDNICTCKTLEMLKLKLDFDFKI----PTSR-------ICFPSLKCLHAE-MYYPHST- 198 (468)
Q Consensus 134 ~~l~~L~l~~~~~~--~~~~lp~~~~~~~~L~~L~L~~~~~~~~----~~~~-------~~~~~L~~L~L~-~~~~~~~- 198 (468)
.+++.|++....-. ....++..+..+++|++|+|++|.+... |... ..+++|++|+|+ +.+.+.+
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 46777777532111 1122344455678888888887654321 1111 467888888888 7776532
Q ss_pred -cchhhhhccCCccceEEEeeeeccCCCeeeEE--E-Ec---------CcccEEEEeeeeecccCCce---eEEEecCCe
Q 040527 199 -CITEKLFTICPVLEDLLIEIHLEDKHSVTNLN--I-SS---------LTLKRLTLSLEKVLFSNTKH---QVMIRAPNL 262 (468)
Q Consensus 199 -~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~--i-~~---------~~L~~L~l~~~~~~~~~~~~---~i~~~~p~L 262 (468)
.+. ..+..|++|+.|+|.+|..+..+...+. + .. ++|+.|.+++|.... .... ......++|
T Consensus 112 ~~l~-~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 112 EPLI-DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-GSMKEWAKTFQSHRLL 189 (386)
T ss_dssp HHHH-HHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-GGHHHHHHHHHHCTTC
T ss_pred HHHH-HHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-HHHHHHHHHHHhCCCc
Confidence 233 4567788888888888764300001111 0 01 677777777765321 0111 111134677
Q ss_pred eEEEEecccc
Q 040527 263 EHLCIYDDTL 272 (468)
Q Consensus 263 ~~L~l~~~~~ 272 (468)
++|+++++..
T Consensus 190 ~~L~L~~n~l 199 (386)
T 2ca6_A 190 HTVKMVQNGI 199 (386)
T ss_dssp CEEECCSSCC
T ss_pred CEEECcCCCC
Confidence 7777776643
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.80 E-value=9.3e-10 Score=109.91 Aligned_cols=204 Identities=13% Similarity=0.099 Sum_probs=135.0
Q ss_pred cCceEEEEEEEecceeeecC-CCccccCccceEEecccccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIELP-DNICTCKTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
.+++.|++... . ...++ ..+..+++|++|+|++|.+...++ .+..+++|++|+|+ +.+... -. ..+.++++
T Consensus 88 ~~L~~L~Ls~n--~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~--~~-~~~~~l~~ 161 (440)
T 3zyj_A 88 RHLEILQLSRN--H-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI--PS-YAFNRIPS 161 (440)
T ss_dssp SSCCEEECCSS--C-CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE--CT-TTTTTCTT
T ss_pred CCCCEEECCCC--c-CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc--CH-HHhhhCcc
Confidence 57788888632 1 23334 445568999999999999988754 47789999999999 887642 23 56889999
Q ss_pred cceEEEeeeeccCCCeeeEEE----EcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceE---EEecCCCe
Q 040527 211 LEDLLIEIHLEDKHSVTNLNI----SSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY---MVHELHSL 283 (468)
Q Consensus 211 Le~L~L~~c~~~~~~~~~~~i----~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~---~~~~~~~L 283 (468)
|+.|+|.+|+ .+..+.. ..++|+.|.+++|.... ... ....++|++|+++++..... .+.++++|
T Consensus 162 L~~L~l~~~~----~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 233 (440)
T 3zyj_A 162 LRRLDLGELK----RLSYISEGAFEGLSNLRYLNLAMCNLRE---IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233 (440)
T ss_dssp CCEEECCCCT----TCCEECTTTTTTCSSCCEEECTTSCCSS---CCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cCEeCCCCCC----CcceeCcchhhcccccCeecCCCCcCcc---ccc-cCCCcccCEEECCCCccCccChhhhccCccC
Confidence 9999999976 3333321 24679999999986432 111 22457899999998865544 34567777
Q ss_pred eEEEEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEec----
Q 040527 284 TEVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEE---- 359 (468)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~---- 359 (468)
+.+++...... .. ....+..+++|+.|+++.+.+ ..+....+..+++|+.|+|+.+.
T Consensus 234 ~~L~L~~n~l~----~~------------~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 234 QKLWMIQSQIQ----VI------------ERNAFDNLQSLVEINLAHNNL---TLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CEEECTTCCCC----EE------------CTTSSTTCTTCCEEECTTSCC---CCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CEEECCCCcee----EE------------ChhhhcCCCCCCEEECCCCCC---CccChhHhccccCCCEEEcCCCCccCC
Confidence 77766432210 00 012245678889999988877 44433445677888888887543
Q ss_pred CCchhHHHHHh
Q 040527 360 SGFRLLPIILR 370 (468)
Q Consensus 360 ~~~~~l~~ll~ 370 (468)
....++...++
T Consensus 295 C~l~~l~~~~~ 305 (440)
T 3zyj_A 295 CDILWLSWWIK 305 (440)
T ss_dssp STTHHHHHHHH
T ss_pred CCchHHHHHHH
Confidence 33444544444
No 67
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.80 E-value=3.1e-09 Score=71.85 Aligned_cols=39 Identities=31% Similarity=0.364 Sum_probs=33.4
Q ss_pred CccccCCCChHHHHHHhcCCCchhhhhhhhhhhhHHHHh
Q 040527 21 KMDRISSLPDEILCHILSFLPIKCAVQTCILSSRWKHLW 59 (468)
Q Consensus 21 ~~d~~s~LPd~vL~~Ils~L~~~~~~r~s~vskrWr~lw 59 (468)
..+.++.||+|++.+||+||+.+|+++++.|||+|+.+.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999999764
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.80 E-value=4.2e-10 Score=113.83 Aligned_cols=224 Identities=12% Similarity=0.126 Sum_probs=132.1
Q ss_pred CceEEEEEEEecceeeecC-CCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccc
Q 040527 135 NVGDIELNHVYVDVLIELP-DNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLE 212 (468)
Q Consensus 135 ~l~~L~l~~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le 212 (468)
+++.|++.... ...++ ..+..+++|++|+|++|.+...++ +..+++|++|+|+ +.+.+ +. .+|.|+
T Consensus 35 ~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~---l~-----~~~~L~ 102 (487)
T 3oja_A 35 NVKELDLSGNP---LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE---LL-----VGPSIE 102 (487)
T ss_dssp GCCEEECCSSC---CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE---EE-----ECTTCC
T ss_pred CccEEEeeCCc---CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC---CC-----CCCCcC
Confidence 67777776321 22333 455667889999998888775533 7788889999888 76642 22 237888
Q ss_pred eEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEE-EecCCeeEEEEeccccceEE---E-ecCCCeeEEE
Q 040527 213 DLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVM-IRAPNLEHLCIYDDTLVSYM---V-HELHSLTEVH 287 (468)
Q Consensus 213 ~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~-~~~p~L~~L~l~~~~~~~~~---~-~~~~~L~~~~ 287 (468)
.|++.+|... ++.. ...++|+.|.+++|.... ..... ...++|+.|+++++...... + .++++|+.++
T Consensus 103 ~L~L~~N~l~--~~~~--~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 103 TLHAANNNIS--RVSC--SRGQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp EEECCSSCCC--CEEE--CCCSSCEEEECCSSCCCS---GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred EEECcCCcCC--CCCc--cccCCCCEEECCCCCCCC---CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 8888888654 3221 224678888888776321 11111 23577888888777554432 2 2467777777
Q ss_pred Eeeeeecc--cccCcCCCCCCCCchhh---HHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCc
Q 040527 288 FDIEFDKY--FVEDLQEFDPPNIPADR---MLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGF 362 (468)
Q Consensus 288 l~~~~~~~--~~~~~~~l~~~~~~~~~---~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~ 362 (468)
++...... ....++.|+.+.+.... +..-+..+++|+.|+++.+.+ ..+ ...+..+++|+.|+++.+....
T Consensus 176 Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l---~~l-p~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL---VLI-EKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp CTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC---CEE-CTTCCCCTTCCEEECTTCCBCH
T ss_pred cCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcC---ccc-chhhccCCCCCEEEcCCCCCcC
Confidence 65432211 11224444443331110 111155677788888888777 333 1234566777777776544343
Q ss_pred hhHHHHHhcCCCCceEEEe
Q 040527 363 RLLPIILRSLPNLGAMEID 381 (468)
Q Consensus 363 ~~l~~ll~~~p~L~~L~l~ 381 (468)
..++..+..++.|+.|.+.
T Consensus 252 ~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 252 GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHhCCCCcEEecc
Confidence 4666777777777777765
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.80 E-value=1.6e-09 Score=102.99 Aligned_cols=178 Identities=16% Similarity=0.101 Sum_probs=93.4
Q ss_pred ccCccceEEecccccCCC-CCCc--ccCCcccEEEEE-EEecCcccchhhhhccC-----CccceEEEeeeeccCCCeee
Q 040527 158 TCKTLEMLKLKLDFDFKI-PTSR--ICFPSLKCLHAE-MYYPHSTCITEKLFTIC-----PVLEDLLIEIHLEDKHSVTN 228 (468)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~-~~~~--~~~~~L~~L~L~-~~~~~~~~l~~~l~~~c-----p~Le~L~L~~c~~~~~~~~~ 228 (468)
.+++|++|+|++|.+... |... ..+++|++|+|+ +.+.+. . ..+... +.|++|+|.+|... ++..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~-~~~~~l~~~~~~~L~~L~L~~N~l~--~~~~ 166 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR---D-AWLAELQQWLKPGLKVLSIAQAHSL--NFSC 166 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS---S-SHHHHHHTTCCTTCCEEEEESCSCC--CCCT
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch---h-HHHHHHHHhhcCCCcEEEeeCCCCc--cchH
Confidence 467788888888877643 3333 677788888888 776543 1 223333 77888888877644 2221
Q ss_pred EEE-EcCcccEEEEeeeeecccCC-ceeEE-EecCCeeEEEEeccccceEEEecCCCeeEEEEeeeeecccccCcCCCCC
Q 040527 229 LNI-SSLTLKRLTLSLEKVLFSNT-KHQVM-IRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDIEFDKYFVEDLQEFDP 305 (468)
Q Consensus 229 ~~i-~~~~L~~L~l~~~~~~~~~~-~~~i~-~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~ 305 (468)
-.+ ..++|+.|++++|....... ...+. ...++|++|+++++.... .
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-------------------------~----- 216 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-------------------------P----- 216 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-------------------------H-----
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-------------------------h-----
Confidence 011 23456666666553110000 00000 123555555555442210 0
Q ss_pred CCCchhhHHHHhhhcCceeEEEEeccccccccccc-ccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEee
Q 040527 306 PNIPADRMLQLLKGITNTRFLSLSAGIISALDCAF-EDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 306 ~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~-~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
......++..+++++.|+++.+.+ .... ......+++|+.|+++.+... .++.-+. ++|+.|++++
T Consensus 217 ----~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~ 283 (312)
T 1wwl_A 217 ----SGVCSALAAARVQLQGLDLSHNSL---RDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSY 283 (312)
T ss_dssp ----HHHHHHHHHTTCCCSEEECTTSCC---CSSCCCSCCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCS
T ss_pred ----HHHHHHHHhcCCCCCEEECCCCcC---CcccchhhhhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCC
Confidence 123335556778888888888877 3221 122334567777777655332 1211111 6777777775
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.78 E-value=3.4e-10 Score=106.09 Aligned_cols=197 Identities=16% Similarity=0.114 Sum_probs=125.1
Q ss_pred cCceEEEEEEEecceeeecC-CCccccCccceEEecccccCCC-CCCcccCCcccEEEEE-EE-ecCcccchhhhhccCC
Q 040527 134 RNVGDIELNHVYVDVLIELP-DNICTCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MY-YPHSTCITEKLFTICP 209 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~-~~~~~~l~~~l~~~cp 209 (468)
.++++|++.. .. ...++ ..+..+++|++|+|+++.+... +..+..+++|++|+|+ +. +... .. ..+.+++
T Consensus 32 ~~l~~L~l~~--n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~--~~-~~~~~l~ 105 (285)
T 1ozn_A 32 AASQRIFLHG--NR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV--DP-ATFHGLG 105 (285)
T ss_dssp TTCSEEECTT--SC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC--CT-TTTTTCT
T ss_pred CCceEEEeeC--Cc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc--CH-HHhcCCc
Confidence 4677777752 21 23344 3456678899999998887765 3456788899999998 75 4432 13 5577888
Q ss_pred ccceEEEeeeeccCCCeeeEEE-EcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEE---EecCCCeeE
Q 040527 210 VLEDLLIEIHLEDKHSVTNLNI-SSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYM---VHELHSLTE 285 (468)
Q Consensus 210 ~Le~L~L~~c~~~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~ 285 (468)
+|++|++.+|... ++..-.+ ..++|+.|.++++...... ....-..++|++|+++++....+. +.++++|+.
T Consensus 106 ~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 106 RLHTLHLDRCGLQ--ELGPGLFRGLAALQYLYLQDNALQALP--DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TCCEEECTTSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCcCC--EECHhHhhCCcCCCEEECCCCcccccC--HhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence 9999999888654 2211111 2467888888887532100 000123578999999887655443 456778888
Q ss_pred EEEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEec
Q 040527 286 VHFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEE 359 (468)
Q Consensus 286 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~ 359 (468)
+++...... . .....+..+++++.|+++.+.+ ..+....+..+++|+.|+++.+.
T Consensus 182 L~l~~n~l~----~------------~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 182 LLLHQNRVA----H------------VHPHAFRDLGRLMTLYLFANNL---SALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EECCSSCCC----E------------ECTTTTTTCTTCCEEECCSSCC---SCCCHHHHTTCTTCCEEECCSSC
T ss_pred EECCCCccc----c------------cCHhHccCcccccEeeCCCCcC---CcCCHHHcccCcccCEEeccCCC
Confidence 776543211 0 0112346788999999999887 33322235578899999997654
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.77 E-value=1.1e-09 Score=101.69 Aligned_cols=67 Identities=18% Similarity=0.143 Sum_probs=43.0
Q ss_pred ecCCCccccCccceEEecccccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeecc
Q 040527 151 ELPDNICTCKTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLED 222 (468)
Q Consensus 151 ~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~ 222 (468)
.+|..+. ++|+.|+|+++.+...++ .+..+++|++|+|+ +.+... -. .++.+++.|++|+|.+|...
T Consensus 30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i--~~-~~~~~l~~L~~L~l~~n~l~ 98 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL--PA-GIFKELKNLETLWVTDNKLQ 98 (270)
T ss_dssp SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC--CT-TTTSSCTTCCEEECCSSCCC
T ss_pred ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee--Ch-hhhcCCCCCCEEECCCCcCC
Confidence 4454332 567777777777766543 45677777888777 666532 23 55677777777777777543
No 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.77 E-value=1.4e-09 Score=108.97 Aligned_cols=216 Identities=11% Similarity=0.105 Sum_probs=140.8
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLE 212 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le 212 (468)
.+++.|++.... ...+| +..+++|++|+|++|.+... + ...+++|++|+|+ +.+.+ +. +..+++|+
T Consensus 64 ~~L~~L~Ls~n~---l~~~~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~N~l~~---l~---~~~l~~L~ 130 (457)
T 3bz5_A 64 TGLTKLICTSNN---ITTLD--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDTNKLTK---LD---VSQNPLLT 130 (457)
T ss_dssp TTCSEEECCSSC---CSCCC--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCSSCCSC---CC---CTTCTTCC
T ss_pred CCCCEEEccCCc---CCeEc--cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCCCcCCe---ec---CCCCCcCC
Confidence 688999887322 22344 56789999999999999885 2 7789999999999 87764 33 67899999
Q ss_pred eEEEeeeeccCCCeeeEEE-EcCcccEEEEeeeeecccCCceeEEE-ecCCeeEEEEeccccceEEEecCCCeeEEEEee
Q 040527 213 DLLIEIHLEDKHSVTNLNI-SSLTLKRLTLSLEKVLFSNTKHQVMI-RAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDI 290 (468)
Q Consensus 213 ~L~L~~c~~~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~i~~-~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~ 290 (468)
.|++.+|... ++ .+ ..++|+.|.+..|... ..+.+ ..++|+.|+++++....+.+.++++|+.+++..
T Consensus 131 ~L~l~~N~l~--~l---~l~~l~~L~~L~l~~n~~~-----~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 131 YLNCARNTLT--EI---DVSHNTQLTELDCHLNKKI-----TKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDT 200 (457)
T ss_dssp EEECTTSCCS--CC---CCTTCTTCCEEECTTCSCC-----CCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCS
T ss_pred EEECCCCccc--ee---ccccCCcCCEEECCCCCcc-----cccccccCCcCCEEECCCCccceeccccCCCCCEEECcC
Confidence 9999999866 43 23 2467999999998422 11122 458999999999877777788889999988765
Q ss_pred eeecc-cccCcCCCCCCCCchh---hHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecC------
Q 040527 291 EFDKY-FVEDLQEFDPPNIPAD---RMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEES------ 360 (468)
Q Consensus 291 ~~~~~-~~~~~~~l~~~~~~~~---~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~------ 360 (468)
..... .+..++.|+.+.+... .+. +..+++++.|+++.+.+ ..+ ....+++|+.|.+.....
T Consensus 201 N~l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l---~~~---~~~~l~~L~~L~l~~n~L~~L~l~ 272 (457)
T 3bz5_A 201 NNITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPL---TEL---DVSTLSKLTTLHCIQTDLLEIDLT 272 (457)
T ss_dssp SCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCC---SCC---CCTTCTTCCEEECTTCCCSCCCCT
T ss_pred CcCCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcC---CCc---CHHHCCCCCEEeccCCCCCEEECC
Confidence 42211 2444555554443111 111 45667777777777766 222 123455555554332211
Q ss_pred --C-chhHHHHHhcCCCCceEEEee
Q 040527 361 --G-FRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 361 --~-~~~l~~ll~~~p~L~~L~l~~ 382 (468)
. ...++ ...|++|+.|+++.
T Consensus 273 ~n~~~~~~~--~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 273 HNTQLIYFQ--AEGCRKIKELDVTH 295 (457)
T ss_dssp TCTTCCEEE--CTTCTTCCCCCCTT
T ss_pred CCccCCccc--ccccccCCEEECCC
Confidence 0 01111 24678888888776
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.75 E-value=4.3e-09 Score=99.77 Aligned_cols=166 Identities=14% Similarity=0.124 Sum_probs=114.9
Q ss_pred hcCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCcc
Q 040527 133 ERNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVL 211 (468)
Q Consensus 133 ~~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~L 211 (468)
..+++.|++.... ...++. +..+++|++|+|++|.+... +....+++|++|+|+ +.+.+ +. . +..+++|
T Consensus 62 l~~L~~L~L~~n~---i~~~~~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~---~~-~-l~~l~~L 131 (308)
T 1h6u_A 62 LNNLIGLELKDNQ---ITDLAP-LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITD---VT-P-LAGLSNL 131 (308)
T ss_dssp CTTCCEEECCSSC---CCCCGG-GTTCCSCCEEECCSCCCSCC-GGGTTCTTCCEEECTTSCCCC---CG-G-GTTCTTC
T ss_pred cCCCCEEEccCCc---CCCChh-HccCCCCCEEEccCCcCCCc-hhhcCCCCCCEEECCCCCCCC---ch-h-hcCCCCC
Confidence 3688999987322 334555 67789999999999999876 567889999999999 88764 34 3 7789999
Q ss_pred ceEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEEEecCCCeeEEEEeee
Q 040527 212 EDLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDIE 291 (468)
Q Consensus 212 e~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~ 291 (468)
+.|++.+|... ++..+ -..++|+.|.+++|.... ... ....++|+.|+++++......
T Consensus 132 ~~L~l~~n~l~--~~~~l-~~l~~L~~L~l~~n~l~~---~~~-l~~l~~L~~L~l~~n~l~~~~--------------- 189 (308)
T 1h6u_A 132 QVLYLDLNQIT--NISPL-AGLTNLQYLSIGNAQVSD---LTP-LANLSKLTTLKADDNKISDIS--------------- 189 (308)
T ss_dssp CEEECCSSCCC--CCGGG-GGCTTCCEEECCSSCCCC---CGG-GTTCTTCCEEECCSSCCCCCG---------------
T ss_pred CEEECCCCccC--cCccc-cCCCCccEEEccCCcCCC---Chh-hcCCCCCCEEECCCCccCcCh---------------
Confidence 99999999865 44331 134689999999986421 111 224588999998887442110
Q ss_pred eecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEec
Q 040527 292 FDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEE 359 (468)
Q Consensus 292 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~ 359 (468)
. +..+++++.|+++.+.+ ..+. .+..+++|+.|+++.+.
T Consensus 190 -------------------~-----l~~l~~L~~L~L~~N~l---~~~~--~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 190 -------------------P-----LASLPNLIEVHLKNNQI---SDVS--PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -------------------G-----GGGCTTCCEEECTTSCC---CBCG--GGTTCTTCCEEEEEEEE
T ss_pred -------------------h-----hcCCCCCCEEEccCCcc---Cccc--cccCCCCCCEEEccCCe
Confidence 0 45566777777777666 2221 24566677777776553
No 74
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.75 E-value=6.5e-11 Score=112.26 Aligned_cols=204 Identities=17% Similarity=0.080 Sum_probs=87.5
Q ss_pred ecCCCc-cccCccceEEecccccCCC---CCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCC
Q 040527 151 ELPDNI-CTCKTLEMLKLKLDFDFKI---PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHS 225 (468)
Q Consensus 151 ~lp~~~-~~~~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~ 225 (468)
.+|..+ ..+++|++|+|++|.+... +.....+++|++|+|+ +.+.. +. ..+.++++|+.|++.+|... +
T Consensus 42 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~---l~-~~~~~l~~L~~L~l~~n~l~--~ 115 (306)
T 2z66_A 42 SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT---MS-SNFLGLEQLEHLDFQHSNLK--Q 115 (306)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE---EE-EEEETCTTCCEEECTTSEEE--S
T ss_pred ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc---Ch-hhcCCCCCCCEEECCCCccc--c
Confidence 444432 3455666666666554422 1223345566666665 54432 22 33445566666666555432 1
Q ss_pred eee--EEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccce----EEEecCCCeeEEEEeeeeecccccC
Q 040527 226 VTN--LNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVS----YMVHELHSLTEVHFDIEFDKYFVED 299 (468)
Q Consensus 226 ~~~--~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~ 299 (468)
+.. .....++|+.|.+++|..... .....-..++|++|+++++.... ..+.++++|+.+++..... ..
T Consensus 116 ~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l----~~ 189 (306)
T 2z66_A 116 MSEFSVFLSLRNLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL----EQ 189 (306)
T ss_dssp STTTTTTTTCTTCCEEECTTSCCEEC--STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC----CE
T ss_pred cccchhhhhccCCCEEECCCCcCCcc--chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc----CC
Confidence 111 001124555555555432100 00000123556666665553321 1234455555555432211 00
Q ss_pred cCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCC-CCceE
Q 040527 300 LQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLP-NLGAM 378 (468)
Q Consensus 300 ~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p-~L~~L 378 (468)
. ....+..+++++.|+++.+.+ ..+....+..+++|+.|+++.+.... ..+..+..+| +|+.|
T Consensus 190 ~------------~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~L~~L 253 (306)
T 2z66_A 190 L------------SPTAFNSLSSLQVLNMSHNNF---FSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFL 253 (306)
T ss_dssp E------------CTTTTTTCTTCCEEECTTSCC---SBCCSGGGTTCTTCCEEECTTSCCCB-CSSSSCCCCCTTCCEE
T ss_pred c------------CHHHhcCCCCCCEEECCCCcc---CccChhhccCcccCCEeECCCCCCcc-cCHHHHHhhhccCCEE
Confidence 0 011234455666666666655 22211123445566666665443211 1111233343 66666
Q ss_pred EEee
Q 040527 379 EIDF 382 (468)
Q Consensus 379 ~l~~ 382 (468)
++++
T Consensus 254 ~L~~ 257 (306)
T 2z66_A 254 NLTQ 257 (306)
T ss_dssp ECTT
T ss_pred EccC
Confidence 6665
No 75
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.75 E-value=2.8e-11 Score=121.66 Aligned_cols=262 Identities=13% Similarity=-0.002 Sum_probs=129.7
Q ss_pred ccccCccceEEecccccCCC-----CCCcccCCcccEEEEE-EEecCcccchhhhhccCC----ccceEEEeeeeccCCC
Q 040527 156 ICTCKTLEMLKLKLDFDFKI-----PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICP----VLEDLLIEIHLEDKHS 225 (468)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~-----~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp----~Le~L~L~~c~~~~~~ 225 (468)
+..+++|++|+|++|.+... +.....+++|++|+|+ +.+.+.. .. .++..++ .|++|+|.+|.....+
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~-~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG-VH-CVLQGLQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH-HH-HHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHH-HH-HHHHHHhhCCCceeEEEccCCCCCHHH
Confidence 34567788888887776531 1224456778888887 7665432 44 4555555 6888888877643101
Q ss_pred eeeEE---EEcCcccEEEEeeeeecccCCceeEE----EecCCeeEEEEeccccceE-------EEecCCCeeEEEEeee
Q 040527 226 VTNLN---ISSLTLKRLTLSLEKVLFSNTKHQVM----IRAPNLEHLCIYDDTLVSY-------MVHELHSLTEVHFDIE 291 (468)
Q Consensus 226 ~~~~~---i~~~~L~~L~l~~~~~~~~~~~~~i~----~~~p~L~~L~l~~~~~~~~-------~~~~~~~L~~~~l~~~ 291 (468)
...+. -..++|+.|++++|.... .....+. -..++|++|+++++..... .+..+++|+.+++...
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDNLLGD-AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHccCCceeEEECCCCcCch-HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 11111 124567777777765211 0000000 0124577777777643221 1234456666554322
Q ss_pred eecccccCcCCCCCCCCchhhHHHHhh----hcCceeEEEEecccccccc--cccccCCCCCCCcceEEEEEecCCchhH
Q 040527 292 FDKYFVEDLQEFDPPNIPADRMLQLLK----GITNTRFLSLSAGIISALD--CAFEDYIPTFPYLTYLKVEIEESGFRLL 365 (468)
Q Consensus 292 ~~~~~~~~~~~l~~~~~~~~~~~~~l~----~~~~l~~L~l~~~~~~~~~--~l~~~~~~~~~~L~~L~l~~~~~~~~~l 365 (468)
.. .......+.. ..++++.|+++.+.+.+.. .+ ...+..+++|++|+++.+.....++
T Consensus 181 ~i---------------~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 181 DI---------------NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL-CGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp BC---------------HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH-HHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred Cc---------------chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH-HHHHHhCCCccEEeccCCcCChHHH
Confidence 11 1122222222 3447777777777652100 01 1123356677777776654332222
Q ss_pred H----HHHhcCCCCceEEEeeeecCCCCCCCCCCccCccc--ccceeEEEEEeecCch-HHHHHHHHHHhcCcccceEEE
Q 040527 366 P----IILRSLPNLGAMEIDFLIVGDNLRWTEPQCVPNCL--LLHVKKIEICGFEGLK-HELELVKYLLKNSEVLDKMII 438 (468)
Q Consensus 366 ~----~ll~~~p~L~~L~l~~~~~~~~~~w~~~~~~~~~~--~~~L~~v~i~~~~g~~-~e~~~~~~ll~~a~~L~~l~i 438 (468)
. .+...+++|+.|+++++..... ....++..+ ..+|+.+.+.+..-.. ....+...+..+.+.|+.+.+
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAK----GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHH----HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHH----HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 2 2333577777777765110000 000011111 3567777776433222 222444555556678888887
Q ss_pred Ee
Q 040527 439 RS 440 (468)
Q Consensus 439 ~~ 440 (468)
..
T Consensus 321 ~~ 322 (461)
T 1z7x_W 321 KS 322 (461)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 76
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.71 E-value=2.2e-09 Score=102.06 Aligned_cols=218 Identities=13% Similarity=0.080 Sum_probs=143.9
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccC-CCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCcc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDF-KIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVL 211 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~L 211 (468)
..++.|++... ......+|..+..+++|++|+|++|.+. ..|..+..+++|++|+|+ +.+.+. +. ..+..+++|
T Consensus 76 ~~L~~L~L~~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p-~~~~~l~~L 151 (313)
T 1ogq_A 76 PYLNFLYIGGI-NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT--LP-PSISSLPNL 151 (313)
T ss_dssp TTCSEEEEEEE-TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC--CC-GGGGGCTTC
T ss_pred CCCCeeeCCCC-CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc--CC-hHHhcCCCC
Confidence 68889988731 2223467888888999999999999987 445567899999999999 888742 44 567889999
Q ss_pred ceEEEeeeeccCCCeeeEEE-EcC-cccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceE---EEecCCCeeEE
Q 040527 212 EDLLIEIHLEDKHSVTNLNI-SSL-TLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY---MVHELHSLTEV 286 (468)
Q Consensus 212 e~L~L~~c~~~~~~~~~~~i-~~~-~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~ 286 (468)
++|++.+|... +.....+ ..+ +|+.|.++++....... -.+...+|+.|+++++..... .+.++++|+.+
T Consensus 152 ~~L~L~~N~l~--~~~p~~l~~l~~~L~~L~L~~N~l~~~~~---~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 152 VGITFDGNRIS--GAIPDSYGSFSKLFTSMTISRNRLTGKIP---PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp CEEECCSSCCE--EECCGGGGCCCTTCCEEECCSSEEEEECC---GGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred CeEECcCCccc--CcCCHHHhhhhhcCcEEECcCCeeeccCC---hHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence 99999998743 1100011 123 79999999986421000 001122499999998754322 35677888888
Q ss_pred EEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHH
Q 040527 287 HFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLP 366 (468)
Q Consensus 287 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~ 366 (468)
++....... ..+ . +..+++++.|+++.+.+ .......+..+++|+.|+++.+... ..++
T Consensus 227 ~L~~N~l~~---~~~-------------~-~~~l~~L~~L~Ls~N~l---~~~~p~~l~~l~~L~~L~Ls~N~l~-~~ip 285 (313)
T 1ogq_A 227 HLAKNSLAF---DLG-------------K-VGLSKNLNGLDLRNNRI---YGTLPQGLTQLKFLHSLNVSFNNLC-GEIP 285 (313)
T ss_dssp ECCSSEECC---BGG-------------G-CCCCTTCCEEECCSSCC---EECCCGGGGGCTTCCEEECCSSEEE-EECC
T ss_pred ECCCCceee---ecC-------------c-ccccCCCCEEECcCCcc---cCcCChHHhcCcCCCEEECcCCccc-ccCC
Confidence 876543211 111 1 35678999999999887 3221223557789999999765331 1122
Q ss_pred HHHhcCCCCceEEEee
Q 040527 367 IILRSLPNLGAMEIDF 382 (468)
Q Consensus 367 ~ll~~~p~L~~L~l~~ 382 (468)
.. ..+++|+.|++.+
T Consensus 286 ~~-~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYAN 300 (313)
T ss_dssp CS-TTGGGSCGGGTCS
T ss_pred CC-ccccccChHHhcC
Confidence 22 5678888888876
No 77
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.69 E-value=1.7e-08 Score=88.90 Aligned_cols=58 Identities=14% Similarity=-0.043 Sum_probs=39.6
Q ss_pred ccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeec
Q 040527 158 TCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLE 221 (468)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~ 221 (468)
.+++|+.|+++++.+...+ ....+++|++|+|+ +.+.+ + ..+..+|.|++|++.+|..
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~---~--~~l~~l~~L~~L~l~~n~l 100 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATN---Y--NPISGLSNLERLRIMGKDV 100 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC---C--GGGTTCTTCCEEEEECTTC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCc---c--hhhhcCCCCCEEEeECCcc
Confidence 4567778888877777653 56677788888888 74432 2 2355678888888887754
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.68 E-value=1.4e-09 Score=101.38 Aligned_cols=53 Identities=15% Similarity=0.001 Sum_probs=28.2
Q ss_pred EEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEee
Q 040527 325 FLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 325 ~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
.|+++.+.+ ..+.. ......+|+.|+++.+.... ....++..+++|+.|++.+
T Consensus 181 ~L~ls~n~l---~~~~~-~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 181 SLDLSLNPM---NFIQP-GAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp EEECCSSCC---CEECT-TSSCSCCEEEEECCSSCCSC-CCTTTTTTCCSCCEEECCS
T ss_pred eeecCCCcc---cccCc-cccCCCcccEEECCCCceee-cCHhHhcccccccEEEccC
Confidence 677777666 33311 12223367777776543211 1123456677777777775
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.68 E-value=3.6e-10 Score=109.88 Aligned_cols=208 Identities=13% Similarity=0.147 Sum_probs=96.4
Q ss_pred CccceEEecccccCCCCC-----CcccCC-cccEEEEE-EEecCcc--cchhhhhccC-CccceEEEeeeeccCCCeeeE
Q 040527 160 KTLEMLKLKLDFDFKIPT-----SRICFP-SLKCLHAE-MYYPHST--CITEKLFTIC-PVLEDLLIEIHLEDKHSVTNL 229 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~~~-----~~~~~~-~L~~L~L~-~~~~~~~--~l~~~l~~~c-p~Le~L~L~~c~~~~~~~~~~ 229 (468)
++|++|+|++|.+...++ .+..++ +|++|+|+ +.+.+.. .+. .++..+ +.|++|+|.+|.....+...+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV-QILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH-HHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHH-HHHhccCCCccEEECcCCcCChHHHHHH
Confidence 457777777776655422 133555 67777777 6665432 122 233332 677777777776431011111
Q ss_pred E--E-Ec-CcccEEEEeeeeecccCCceeEE--E-e-cCCeeEEEEeccccceEE-------EecCC-CeeEEEEeeeee
Q 040527 230 N--I-SS-LTLKRLTLSLEKVLFSNTKHQVM--I-R-APNLEHLCIYDDTLVSYM-------VHELH-SLTEVHFDIEFD 293 (468)
Q Consensus 230 ~--i-~~-~~L~~L~l~~~~~~~~~~~~~i~--~-~-~p~L~~L~l~~~~~~~~~-------~~~~~-~L~~~~l~~~~~ 293 (468)
. + .. ++|+.|++++|.... .....+. + . ..+|++|+++++...... +...+ +|+.+++.....
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 0 0 11 456777766665321 1110000 0 0 136777776665432110 11222 444444322110
Q ss_pred cccccCcCCCCCCCCchhhHHHHhhhc-CceeEEEEeccccccccc--ccccCCCC-CCCcceEEEEEecCCc---hhHH
Q 040527 294 KYFVEDLQEFDPPNIPADRMLQLLKGI-TNTRFLSLSAGIISALDC--AFEDYIPT-FPYLTYLKVEIEESGF---RLLP 366 (468)
Q Consensus 294 ~~~~~~~~~l~~~~~~~~~~~~~l~~~-~~l~~L~l~~~~~~~~~~--l~~~~~~~-~~~L~~L~l~~~~~~~---~~l~ 366 (468)
... ....+...+..+ ++|+.|+++.+.+.+... + ...+.. .++|++|+|+.+.... ..+.
T Consensus 180 ----~~~--------~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 180 ----ASK--------NCAELAKFLASIPASVTSLDLSANLLGLKSYAEL-AYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp ----GGS--------CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH-HHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred ----chh--------hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH-HHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 000 023444555555 377777777766621000 1 001112 2467777776654322 3445
Q ss_pred HHHhcCCCCceEEEee
Q 040527 367 IILRSLPNLGAMEIDF 382 (468)
Q Consensus 367 ~ll~~~p~L~~L~l~~ 382 (468)
.++..+++|+.|++++
T Consensus 247 ~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDY 262 (362)
T ss_dssp HTTTTTTTCSEEEEEH
T ss_pred HHHhcCCCccEEEecc
Confidence 5556667777777766
No 80
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.65 E-value=8.5e-09 Score=96.90 Aligned_cols=58 Identities=14% Similarity=-0.004 Sum_probs=26.9
Q ss_pred cccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeee
Q 040527 157 CTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHL 220 (468)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~ 220 (468)
..+++|++|+|++|.+...++ ...+++|++|+|+ +.+.+ +. . +..++.|+.|++.+|.
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~---~~-~-l~~l~~L~~L~L~~n~ 123 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD---LS-S-LKDLKKLKSLSLEHNG 123 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC---GG-G-GTTCTTCCEEECTTSC
T ss_pred hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC---Ch-h-hccCCCCCEEECCCCc
Confidence 334555555555555444322 4445555555555 44432 22 1 3445555555555544
No 81
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.64 E-value=1.7e-09 Score=114.15 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=28.2
Q ss_pred ccccCccceEEecccccCCC--CC-Ccc--cCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeee
Q 040527 156 ICTCKTLEMLKLKLDFDFKI--PT-SRI--CFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHL 220 (468)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~--~~-~~~--~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~ 220 (468)
+..+++|++|+|++|.+... +. .+. ..++|+.|+|+ +.+.+. .. ..+.++++|+.|++.+|.
T Consensus 349 ~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~--~~-~~~~~l~~L~~L~L~~N~ 416 (680)
T 1ziw_A 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI--ES-DAFSWLGHLEVLDLGLNE 416 (680)
T ss_dssp TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE--CT-TTTTTCTTCCEEECCSSC
T ss_pred hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE--Ch-hhhhCCCCCCEEeCCCCc
Confidence 44567777777766642211 10 011 12355555555 444321 12 334455555555555543
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.64 E-value=5.5e-10 Score=106.22 Aligned_cols=108 Identities=9% Similarity=0.018 Sum_probs=59.2
Q ss_pred hhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEeeeecCCCCCCCCCCcc
Q 040527 318 KGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDFLIVGDNLRWTEPQCV 397 (468)
Q Consensus 318 ~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~w~~~~~~ 397 (468)
..+++++.|+++.+.+..+..+.......+++|+.|+++.+......-...+..+++|+.|++++ +....+
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~---------N~l~~i 268 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF---------TGLKQV 268 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT---------SCCSSC
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC---------CccChh
Confidence 66788888888888772111111112235678888888755332111011234467888888876 233344
Q ss_pred CcccccceeEEEEEeecCchHHHHHHHHHHhcCcccceEEEEe
Q 040527 398 PNCLLLHVKKIEICGFEGLKHELELVKYLLKNSEVLDKMIIRS 440 (468)
Q Consensus 398 ~~~~~~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~i~~ 440 (468)
|..+..+|+++.+.+-.-..- .. +...+.|+.+.+..
T Consensus 269 p~~~~~~L~~L~Ls~N~l~~~-----p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 269 PKGLPAKLSVLDLSYNRLDRN-----PS-PDELPQVGNLSLKG 305 (312)
T ss_dssp CSSCCSEEEEEECCSSCCCSC-----CC-TTTSCEEEEEECTT
T ss_pred hhhccCCceEEECCCCCCCCC-----hh-HhhCCCCCEEeccC
Confidence 544446788877763221111 11 55677777777654
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.62 E-value=9.7e-09 Score=95.37 Aligned_cols=83 Identities=16% Similarity=0.136 Sum_probs=63.1
Q ss_pred cCceEEEEEEEecceeeecCC-CccccCccceEEecccccCCCCCC-cccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIELPD-NICTCKTLEMLKLKLDFDFKIPTS-RICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
.++++|++.... ...+|. .+..+++|++|+|+++.+...++. +..+++|++|+|+ +.+... -. ..+.++++
T Consensus 37 ~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~~~l~~ 110 (270)
T 2o6q_A 37 ADTKKLDLQSNK---LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL--PI-GVFDQLVN 110 (270)
T ss_dssp TTCSEEECCSSC---CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC--CT-TTTTTCSS
T ss_pred CCCCEEECcCCC---CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC--CH-hHcccccC
Confidence 467888876321 334554 556789999999999998877554 4689999999999 887642 23 56889999
Q ss_pred cceEEEeeeecc
Q 040527 211 LEDLLIEIHLED 222 (468)
Q Consensus 211 Le~L~L~~c~~~ 222 (468)
|+.|++.+|...
T Consensus 111 L~~L~l~~n~l~ 122 (270)
T 2o6q_A 111 LAELRLDRNQLK 122 (270)
T ss_dssp CCEEECCSSCCC
T ss_pred CCEEECCCCccC
Confidence 999999998754
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.61 E-value=3.6e-09 Score=98.43 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=17.2
Q ss_pred cCCeeEEEEeccccceEE---EecCCCeeEEEE
Q 040527 259 APNLEHLCIYDDTLVSYM---VHELHSLTEVHF 288 (468)
Q Consensus 259 ~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l 288 (468)
.++|++|+++++...... +.++++|+.+++
T Consensus 132 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 478888888877543322 234445555444
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.61 E-value=1.1e-09 Score=102.15 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=57.3
Q ss_pred eeecCCCccccCccceEEecccccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCe
Q 040527 149 LIELPDNICTCKTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSV 226 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~ 226 (468)
...+|..+. ++|++|+|+++.+...++ .+..+++|++|+|+ +.+.+. .. ..+.++++|+.|+|.+|... ++
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~~~l~~L~~L~L~~n~l~--~~ 91 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI--ED-GAYQSLSHLSTLILTGNPIQ--SL 91 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE--CT-TTTTTCTTCCEEECTTCCCC--EE
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc--CH-HHccCCcCCCEEECCCCccC--cc
Confidence 345565443 578999999888876644 56788899999998 766532 22 45778889999999888643 11
Q ss_pred eeEEE-EcCcccEEEEeeee
Q 040527 227 TNLNI-SSLTLKRLTLSLEK 245 (468)
Q Consensus 227 ~~~~i-~~~~L~~L~l~~~~ 245 (468)
..-.+ ..++|+.|.+.++.
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~ 111 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETN 111 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSC
T ss_pred ChhhhcCCccccEEECCCCC
Confidence 10000 12456666665554
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.57 E-value=7.7e-09 Score=96.15 Aligned_cols=189 Identities=14% Similarity=0.097 Sum_probs=119.0
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLE 212 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le 212 (468)
..+++|.+.... ...++ .+..+++|++|+|++|.+... +....+++|++|+|+ +.+.+. .. ..+.+++.|+
T Consensus 41 ~~L~~L~l~~~~---i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~--~~-~~~~~l~~L~ 112 (272)
T 3rfs_A 41 NSIDQIIANNSD---IKSVQ-GIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSL--PN-GVFDKLTNLK 112 (272)
T ss_dssp TTCCEEECTTSC---CCCCT-TGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCC--CT-TTTTTCTTCC
T ss_pred cceeeeeeCCCC---ccccc-ccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCcc--Ch-hHhcCCcCCC
Confidence 567777765211 12233 356678999999999988775 567788899999998 877642 23 5578889999
Q ss_pred eEEEeeeeccCCCeeeEEE-EcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEEEecCCCeeEEEEeee
Q 040527 213 DLLIEIHLEDKHSVTNLNI-SSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDIE 291 (468)
Q Consensus 213 ~L~L~~c~~~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~ 291 (468)
+|++.+|... ++..-.+ ..++|+.|.+++|...... ....-..++|+.|+++++.....
T Consensus 113 ~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~---------------- 172 (272)
T 3rfs_A 113 ELVLVENQLQ--SLPDGVFDKLTNLTYLNLAHNQLQSLP--KGVFDKLTNLTELDLSYNQLQSL---------------- 172 (272)
T ss_dssp EEECTTSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCC----------------
T ss_pred EEECCCCcCC--ccCHHHhccCCCCCEEECCCCccCccC--HHHhccCccCCEEECCCCCcCcc----------------
Confidence 9999988754 2221111 2467889998887532100 00112458899999988744211
Q ss_pred eecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhc
Q 040527 292 FDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRS 371 (468)
Q Consensus 292 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~ 371 (468)
+ ...+..+++++.|+++.+.+ ..+....+..+++|+.|+++.+... ..
T Consensus 173 ---------~------------~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~l~~N~~~--------~~ 220 (272)
T 3rfs_A 173 ---------P------------EGVFDKLTQLKDLRLYQNQL---KSVPDGVFDRLTSLQYIWLHDNPWD--------CT 220 (272)
T ss_dssp ---------C------------TTTTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTCCEEECCSSCBC--------CC
T ss_pred ---------C------------HHHhcCCccCCEEECCCCcC---CccCHHHHhCCcCCCEEEccCCCcc--------cc
Confidence 0 01235677888888888877 4332233556778888888654321 23
Q ss_pred CCCCceEEEee
Q 040527 372 LPNLGAMEIDF 382 (468)
Q Consensus 372 ~p~L~~L~l~~ 382 (468)
||+|+.|.+..
T Consensus 221 ~~~l~~l~~~~ 231 (272)
T 3rfs_A 221 CPGIRYLSEWI 231 (272)
T ss_dssp TTTTHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 66677666554
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.55 E-value=1.2e-08 Score=105.66 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=24.3
Q ss_pred hhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEec
Q 040527 317 LKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEE 359 (468)
Q Consensus 317 l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~ 359 (468)
+..+++|+.|+|+.+.+ ..+ +.+..+++|+.|+|+.+.
T Consensus 171 l~~l~~L~~L~Ls~N~i---~~l--~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHI---SDL--RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GTTCTTCCEEECCSSCC---CBC--GGGTTCTTCSEEECCSEE
T ss_pred hccCCCCCEEECcCCCC---CCC--hHHccCCCCCEEEccCCc
Confidence 45677777888877766 222 234566777777776543
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.55 E-value=2.9e-09 Score=100.04 Aligned_cols=178 Identities=16% Similarity=0.153 Sum_probs=88.1
Q ss_pred eecCCCccccCccceEEecccccCCC-CCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCee
Q 040527 150 IELPDNICTCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVT 227 (468)
Q Consensus 150 ~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~ 227 (468)
..+|..+. ++++.|+|++|.+... +..+..+++|++|+|+ +.+.+ +. . ...++.|+.|+|.++... .+.
T Consensus 23 ~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~-~-~~~l~~L~~L~Ls~N~l~--~l~ 93 (290)
T 1p9a_G 23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQ-V-DGTLPVLGTLDLSHNQLQ--SLP 93 (290)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE---EE-C-CSCCTTCCEEECCSSCCS--SCC
T ss_pred CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc---cc-C-CCCCCcCCEEECCCCcCC--cCc
Confidence 34554433 5677777777766554 2335566777777777 65543 22 2 255677777777776544 322
Q ss_pred eEEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEE---EecCCCeeEEEEeeeeecccccCcCCCC
Q 040527 228 NLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYM---VHELHSLTEVHFDIEFDKYFVEDLQEFD 304 (468)
Q Consensus 228 ~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~l~ 304 (468)
......++|+.|.++++...... ....-..++|++|+++++....+. +..+++|+.+++.... +...|
T Consensus 94 ~~~~~l~~L~~L~l~~N~l~~l~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~----l~~l~--- 164 (290)
T 1p9a_G 94 LLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN----LTELP--- 164 (290)
T ss_dssp CCTTTCTTCCEEECCSSCCCCCC--SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC----CSCCC---
T ss_pred hhhccCCCCCEEECCCCcCcccC--HHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc----CCccC---
Confidence 21112356777777766432100 000113467777777766443221 2234444444432211 11111
Q ss_pred CCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEe
Q 040527 305 PPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIE 358 (468)
Q Consensus 305 ~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~ 358 (468)
...+..+++|+.|+++.+.+ ..+. ..+....+|+.|.+..+
T Consensus 165 ---------~~~~~~l~~L~~L~L~~N~l---~~ip-~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 165 ---------AGLLNGLENLDTLLLQENSL---YTIP-KGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp ---------TTTTTTCTTCCEEECCSSCC---CCCC-TTTTTTCCCSEEECCSC
T ss_pred ---------HHHhcCcCCCCEEECCCCcC---CccC-hhhcccccCCeEEeCCC
Confidence 02234566677777776666 3331 12334446666666543
No 89
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.54 E-value=3.1e-08 Score=99.08 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=61.4
Q ss_pred CceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccce
Q 040527 135 NVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLED 213 (468)
Q Consensus 135 ~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~ 213 (468)
++++|++.... ...+| .+..+++|++|++++|.+...|. ..++|++|+|+ +.+.+ +. . +.+++.|+.
T Consensus 132 ~L~~L~L~~n~---l~~lp-~~~~l~~L~~L~l~~N~l~~lp~---~~~~L~~L~L~~n~l~~---l~-~-~~~l~~L~~ 199 (454)
T 1jl5_A 132 LLEYLGVSNNQ---LEKLP-ELQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLEE---LP-E-LQNLPFLTA 199 (454)
T ss_dssp TCCEEECCSSC---CSSCC-CCTTCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS---CC-C-CTTCTTCCE
T ss_pred CCCEEECcCCC---CCCCc-ccCCCCCCCEEECCCCcCcccCC---CcccccEEECcCCcCCc---Cc-c-ccCCCCCCE
Confidence 55555554211 22345 35556667777777666655422 23466777776 65543 22 2 556777777
Q ss_pred EEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEecccc
Q 040527 214 LLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTL 272 (468)
Q Consensus 214 L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~ 272 (468)
|++.+|... ++.. ..++|+.|.+++|... .... ....++|++|+++++..
T Consensus 200 L~l~~N~l~--~l~~---~~~~L~~L~l~~n~l~---~lp~-~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 200 IYADNNSLK--KLPD---LPLSLESIVAGNNILE---ELPE-LQNLPFLTTIYADNNLL 249 (454)
T ss_dssp EECCSSCCS--SCCC---CCTTCCEEECCSSCCS---SCCC-CTTCTTCCEEECCSSCC
T ss_pred EECCCCcCC--cCCC---CcCcccEEECcCCcCC---cccc-cCCCCCCCEEECCCCcC
Confidence 777777644 3221 1246666666666432 1111 11345666666665533
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.54 E-value=7.8e-08 Score=87.38 Aligned_cols=125 Identities=11% Similarity=0.086 Sum_probs=85.1
Q ss_pred cCceEEEEEEEecceeeecCC-CccccCccceEEecccc-cCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCC
Q 040527 134 RNVGDIELNHVYVDVLIELPD-NICTCKTLEMLKLKLDF-DFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICP 209 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~-~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp 209 (468)
.++++|++.... ...+|. .+..+++|++|+|++|. +..+++ .+.++++|++|+|+ +.-.. .+....+.+++
T Consensus 31 ~~l~~L~l~~n~---l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~--~i~~~~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLIETH---LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT--YIDPDALKELP 105 (239)
T ss_dssp TTCCEEEEESCC---CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC--EECTTSEECCT
T ss_pred CcccEEEEeCCc---ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee--EcCHHHhCCCC
Confidence 378888887322 345555 45578999999999996 766644 46789999999998 54322 12215678899
Q ss_pred ccceEEEeeeeccCCCeeeEEEEcCccc---EEEEeee-eecccCCceeEE----EecCCee-EEEEecccc
Q 040527 210 VLEDLLIEIHLEDKHSVTNLNISSLTLK---RLTLSLE-KVLFSNTKHQVM----IRAPNLE-HLCIYDDTL 272 (468)
Q Consensus 210 ~Le~L~L~~c~~~~~~~~~~~i~~~~L~---~L~l~~~-~~~~~~~~~~i~----~~~p~L~-~L~l~~~~~ 272 (468)
+|+.|++.+|... ++.. .-..++|+ .|.++++ .. ..+. -..++|+ +|+++++..
T Consensus 106 ~L~~L~l~~n~l~--~lp~-~~~l~~L~~L~~L~l~~N~~l------~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 106 LLKFLGIFNTGLK--MFPD-LTKVYSTDIFFILEITDNPYM------TSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp TCCEEEEEEECCC--SCCC-CTTCCBCCSEEEEEEESCTTC------CEECTTTTTTTBSSEEEEECCSCCC
T ss_pred CCCEEeCCCCCCc--cccc-cccccccccccEEECCCCcch------hhcCcccccchhcceeEEEcCCCCC
Confidence 9999999999866 4443 11234666 8999887 32 2221 1357888 888877644
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.53 E-value=1.2e-08 Score=93.55 Aligned_cols=67 Identities=15% Similarity=0.033 Sum_probs=40.1
Q ss_pred eecCCCccccCccceEEecccccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeec
Q 040527 150 IELPDNICTCKTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLE 221 (468)
Q Consensus 150 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~ 221 (468)
..+|..+. ++|+.|+|+++.+...++ .+..+++|++|+|+ +.+.+. .. ..+.+++.|+.|+|.+|..
T Consensus 27 ~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 27 DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL--SA-GVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC--CT-TTTTTCTTCCEEECTTSCC
T ss_pred cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc--CH-hHhccCCcCCEEECCCCcc
Confidence 34444333 467777777777665532 35567777777777 665532 22 4466677777777777653
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.51 E-value=2.6e-09 Score=103.81 Aligned_cols=257 Identities=15% Similarity=0.121 Sum_probs=144.9
Q ss_pred EEecccccCCCCCCcccC-CcccEEEEE-EEecCcc--cchhhhhccCC-ccceEEEeeeeccCCCeeeEEEE----cCc
Q 040527 165 LKLKLDFDFKIPTSRICF-PSLKCLHAE-MYYPHST--CITEKLFTICP-VLEDLLIEIHLEDKHSVTNLNIS----SLT 235 (468)
Q Consensus 165 L~L~~~~~~~~~~~~~~~-~~L~~L~L~-~~~~~~~--~l~~~l~~~cp-~Le~L~L~~c~~~~~~~~~~~i~----~~~ 235 (468)
++|+++.+....+.+... ++|++|+|+ +.+.+.. .+. ..+.++| .|++|+|.+|.....+...+.-. .++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELI-QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH-HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHH-HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 456666665432333444 459999999 8887643 233 4567788 99999999998652112222111 278
Q ss_pred ccEEEEeeeeecccCCceeE---EEec-CCeeEEEEeccccceEE-------Eec-CCCeeEEEEeeeeecccccCcCCC
Q 040527 236 LKRLTLSLEKVLFSNTKHQV---MIRA-PNLEHLCIYDDTLVSYM-------VHE-LHSLTEVHFDIEFDKYFVEDLQEF 303 (468)
Q Consensus 236 L~~L~l~~~~~~~~~~~~~i---~~~~-p~L~~L~l~~~~~~~~~-------~~~-~~~L~~~~l~~~~~~~~~~~~~~l 303 (468)
|+.|++++|.... .....+ .... ++|++|+++++...... +.. ..+|+.+++..... .+.
T Consensus 82 L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l----~~~--- 153 (362)
T 3goz_A 82 VTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL----GIK--- 153 (362)
T ss_dssp CCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG----GGS---
T ss_pred ccEEECcCCcCCh-HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC----CHH---
Confidence 9999999987432 111110 1112 79999999998654332 122 25788877654321 100
Q ss_pred CCCCCchhhHHHHhhhcC-ceeEEEEeccccccccccc-ccCCCCC-CCcceEEEEEecCCc---hhHHHHHhc-CCCCc
Q 040527 304 DPPNIPADRMLQLLKGIT-NTRFLSLSAGIISALDCAF-EDYIPTF-PYLTYLKVEIEESGF---RLLPIILRS-LPNLG 376 (468)
Q Consensus 304 ~~~~~~~~~~~~~l~~~~-~l~~L~l~~~~~~~~~~l~-~~~~~~~-~~L~~L~l~~~~~~~---~~l~~ll~~-~p~L~ 376 (468)
....+...+..++ +++.|+++.+.+.+..... ...+..+ ++|++|+|+.+.... ..+...+.. +++|+
T Consensus 154 -----~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~ 228 (362)
T 3goz_A 154 -----SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228 (362)
T ss_dssp -----CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCC
T ss_pred -----HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCce
Confidence 0234556666666 9999999999872211100 1123345 489999998765422 446665665 56999
Q ss_pred eEEEeee-ecCCCCCCCCCCccCcccccceeEEEEEeecCchHHHHHHHHHHhcCcccceEEE
Q 040527 377 AMEIDFL-IVGDNLRWTEPQCVPNCLLLHVKKIEICGFEGLKHELELVKYLLKNSEVLDKMII 438 (468)
Q Consensus 377 ~L~l~~~-~~~~~~~w~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~i 438 (468)
.|+++++ ..+.... .... .-....+|+.+.+.+..-..-..+.+..+.+..+.++.+..
T Consensus 229 ~L~Ls~N~l~~~~~~--~l~~-~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~ 288 (362)
T 3goz_A 229 SLNLCLNCLHGPSLE--NLKL-LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288 (362)
T ss_dssp EEECCSSCCCCCCHH--HHHH-TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEE
T ss_pred EEECcCCCCCcHHHH--HHHH-HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEE
Confidence 9999972 2221100 0000 00123679999987553111112233444444444554443
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.51 E-value=7.1e-09 Score=98.36 Aligned_cols=62 Identities=18% Similarity=0.044 Sum_probs=28.3
Q ss_pred CccceEEecccccCCC-CCCc--ccCCcccEEEEE-EEecCccc-chhhhhccCCccceEEEeeeec
Q 040527 160 KTLEMLKLKLDFDFKI-PTSR--ICFPSLKCLHAE-MYYPHSTC-ITEKLFTICPVLEDLLIEIHLE 221 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~-~~~~--~~~~~L~~L~L~-~~~~~~~~-l~~~l~~~cp~Le~L~L~~c~~ 221 (468)
++|++|+|++|.+... |... ..+++|++|+|+ +.+.+... +.+.-+..+++|++|+|.+|..
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 157 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS 157 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc
Confidence 3455555555554433 2222 455555555555 55543211 1001122455666666655543
No 94
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.48 E-value=3.7e-08 Score=98.58 Aligned_cols=115 Identities=17% Similarity=0.107 Sum_probs=68.7
Q ss_pred CccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcccE
Q 040527 160 KTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLKR 238 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~~ 238 (468)
++|++|++++|.+...| .+..+++|++|+++ +.+.+ +. .. .+.|+.|++.+|... ++..+ -..++|+.
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~---lp-~~---~~~L~~L~L~~n~l~--~l~~~-~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK---LP-DL---PPSLEFIAAGNNQLE--ELPEL-QNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC---CC-CC---CTTCCEEECCSSCCS--SCCCC-TTCTTCCE
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc---cC-CC---cccccEEECcCCcCC--cCccc-cCCCCCCE
Confidence 56777777777776653 56677777777777 65543 22 21 246777777777655 43321 12456777
Q ss_pred EEEeeeeecccCCceeEEEecCCeeEEEEeccccceE-EEecCCCeeEEEEeee
Q 040527 239 LTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY-MVHELHSLTEVHFDIE 291 (468)
Q Consensus 239 L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~ 291 (468)
|.+++|... .+....++|++|+++++....+ .+.++++|+.+++...
T Consensus 200 L~l~~N~l~------~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 200 IYADNNSLK------KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp EECCSSCCS------SCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred EECCCCcCC------cCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCC
Confidence 777776532 1111235788888887754332 2556777777777543
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.45 E-value=8.9e-09 Score=97.69 Aligned_cols=93 Identities=16% Similarity=0.086 Sum_probs=66.7
Q ss_pred HHHHHHHHHhcCceEEEEEEEecceeeecCCCc--cccCccceEEecccccCCCCC-----CcccCCcccEEEEE-EEec
Q 040527 124 LKSWVSSAIERNVGDIELNHVYVDVLIELPDNI--CTCKTLEMLKLKLDFDFKIPT-----SRICFPSLKCLHAE-MYYP 195 (468)
Q Consensus 124 ~~~wl~~~~~~~l~~L~l~~~~~~~~~~lp~~~--~~~~~L~~L~L~~~~~~~~~~-----~~~~~~~L~~L~L~-~~~~ 195 (468)
+...........+++|++... .-....|..+ ..+++|++|+|++|.+....+ ....+++|++|+|+ +.+.
T Consensus 81 ~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 158 (310)
T 4glp_A 81 LVGALRVLAYSRLKELTLEDL--KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP 158 (310)
T ss_dssp HHHHHHHHHHSCCCEEEEESC--CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC
T ss_pred HHHHHHhcccCceeEEEeeCC--EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc
Confidence 334444445567999999732 2233455555 668999999999999876322 12369999999999 8885
Q ss_pred CcccchhhhhccCCccceEEEeeeec
Q 040527 196 HSTCITEKLFTICPVLEDLLIEIHLE 221 (468)
Q Consensus 196 ~~~~l~~~l~~~cp~Le~L~L~~c~~ 221 (468)
.. .. ..+.++++|+.|+|.+|..
T Consensus 159 ~~--~~-~~~~~l~~L~~L~Ls~N~l 181 (310)
T 4glp_A 159 AF--SC-EQVRAFPALTSLDLSDNPG 181 (310)
T ss_dssp CC--CT-TSCCCCTTCCEEECCSCTT
T ss_pred hh--hH-HHhccCCCCCEEECCCCCC
Confidence 42 33 5688999999999999963
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.45 E-value=6.7e-08 Score=89.29 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=93.9
Q ss_pred ccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcC
Q 040527 156 ICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSL 234 (468)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~ 234 (468)
+..+++|++|++++|.+... +....+++|++|+|+ +.+.+ +. . +.+++.|+.|++.+|... ++..+.. +
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N~i~~---~~-~-l~~l~~L~~L~L~~N~l~--~l~~~~~--~ 106 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISD---LS-P-LKDLTKLEELSVNRNRLK--NLNGIPS--A 106 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCC---CG-G-GTTCSSCCEEECCSSCCS--CCTTCCC--S
T ss_pred hhhcCcCcEEECcCCCcccc-hHHhhCCCCCEEECCCCccCC---Ch-h-hccCCCCCEEECCCCccC--CcCcccc--C
Confidence 34578999999999988876 467789999999999 87764 44 4 778999999999999765 4333221 6
Q ss_pred cccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEEEecCCCeeEEEEeeeeecccccCcCCCCCCCCchhhHH
Q 040527 235 TLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADRML 314 (468)
Q Consensus 235 ~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 314 (468)
+|+.|.+++|.... ... ....++|+.|+++++.....
T Consensus 107 ~L~~L~L~~N~l~~---~~~-l~~l~~L~~L~Ls~N~i~~~--------------------------------------- 143 (263)
T 1xeu_A 107 CLSRLFLDNNELRD---TDS-LIHLKNLEILSIRNNKLKSI--------------------------------------- 143 (263)
T ss_dssp SCCEEECCSSCCSB---SGG-GTTCTTCCEEECTTSCCCBC---------------------------------------
T ss_pred cccEEEccCCccCC---Chh-hcCcccccEEECCCCcCCCC---------------------------------------
Confidence 67777777765321 110 11345666666655532110
Q ss_pred HHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEec
Q 040527 315 QLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEE 359 (468)
Q Consensus 315 ~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~ 359 (468)
..+..+++|+.|+++.+.+ ..+ ..+..+++|+.|+++.+.
T Consensus 144 ~~l~~l~~L~~L~L~~N~i---~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 144 VMLGFLSKLEVLDLHGNEI---TNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp GGGGGCTTCCEEECTTSCC---CBC--TTSTTCCCCCEEEEEEEE
T ss_pred hHHccCCCCCEEECCCCcC---cch--HHhccCCCCCEEeCCCCc
Confidence 0245567777777777766 222 334566677777776543
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.39 E-value=1e-07 Score=89.45 Aligned_cols=102 Identities=14% Similarity=0.152 Sum_probs=74.5
Q ss_pred ccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcc
Q 040527 158 TCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTL 236 (468)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L 236 (468)
.+++|+.|++++|.+... +....+++|++|+|+ +.+.+ +. . +.++++|+.|++.+|... ++..+ -..++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~---~~-~-l~~l~~L~~L~l~~n~l~--~~~~l-~~l~~L 114 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTD---IK-P-LANLKNLGWLFLDENKVK--DLSSL-KDLKKL 114 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCC---CG-G-GTTCTTCCEEECCSSCCC--CGGGG-TTCTTC
T ss_pred hcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCC---Cc-c-cccCCCCCEEECCCCcCC--CChhh-ccCCCC
Confidence 467899999999988876 557789999999999 87764 44 4 788999999999999765 44331 124679
Q ss_pred cEEEEeeeeecccCCceeEEEecCCeeEEEEecccc
Q 040527 237 KRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTL 272 (468)
Q Consensus 237 ~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~ 272 (468)
+.|.+++|.... ... ....++|+.|+++++..
T Consensus 115 ~~L~L~~n~i~~---~~~-l~~l~~L~~L~l~~n~l 146 (291)
T 1h6t_A 115 KSLSLEHNGISD---ING-LVHLPQLESLYLGNNKI 146 (291)
T ss_dssp CEEECTTSCCCC---CGG-GGGCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCC---Chh-hcCCCCCCEEEccCCcC
Confidence 999999986422 111 12457888888877644
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.35 E-value=1.2e-07 Score=83.33 Aligned_cols=127 Identities=16% Similarity=0.114 Sum_probs=82.4
Q ss_pred hcCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCcc
Q 040527 133 ERNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVL 211 (468)
Q Consensus 133 ~~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~L 211 (468)
..++++|++.... ...+| .+..+++|++|++++|.+... +....+++|++|+|+ +.+.+.. . ..+..+|+|
T Consensus 43 l~~L~~L~l~~n~---i~~l~-~l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~--~-~~l~~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANIN---VTDLT-GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDK--I-PNLSGLTSL 114 (197)
T ss_dssp HHTCCEEEEESSC---CSCCT-TGGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGG--S-CCCTTCTTC
T ss_pred cCCccEEeccCCC---ccChH-HHhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCccc--C-hhhcCCCCC
Confidence 3578888887321 33556 567789999999999977664 567789999999999 8776522 2 346789999
Q ss_pred ceEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccc
Q 040527 212 EDLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDT 271 (468)
Q Consensus 212 e~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~ 271 (468)
+.|++.+|.........+. ..++|+.|.+++|.... ... .....|+|+.|+++++.
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~--~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAIT--DIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCC--CCG-GGGGCSSCCEEECTTBC
T ss_pred CEEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCcc--ccH-hhcCCCCCCEEECCCCC
Confidence 9999999875410111111 24678888888774111 111 11234677777776653
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.35 E-value=7.1e-08 Score=99.76 Aligned_cols=147 Identities=19% Similarity=0.141 Sum_probs=79.9
Q ss_pred ccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcC
Q 040527 156 ICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSL 234 (468)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~ 234 (468)
+..+++|+.|+|++|.+...++ +..+++|+.|+|+ +.+.+. . -+..|+.|+.|+|.+|... ++..+. ..+
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l---~--~l~~l~~L~~L~Ls~N~l~--~l~~l~-~l~ 131 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL---S--SLKDLKKLKSLSLEHNGIS--DINGLV-HLP 131 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC---T--TSTTCTTCCEEECTTSCCC--CCGGGG-GCT
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC---h--hhccCCCCCEEEecCCCCC--CCcccc-CCC
Confidence 4556677777777776665533 5667777777777 665432 1 2455677777777776544 322111 235
Q ss_pred cccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceE-EEecCCCeeEEEEeeeeecccccCcCCCCCCCCchhhH
Q 040527 235 TLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY-MVHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADRM 313 (468)
Q Consensus 235 ~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 313 (468)
+|+.|.+++|.... . ...-..++|+.|+++++..... .+.++++|+.+++..... ...+
T Consensus 132 ~L~~L~Ls~N~l~~---l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i----~~l~------------ 191 (605)
T 1m9s_A 132 QLESLYLGNNKITD---I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI----SDLR------------ 191 (605)
T ss_dssp TCSEEECCSSCCCC---C-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCC----CBCG------------
T ss_pred ccCEEECCCCccCC---c-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCC----CCCh------------
Confidence 56666666654321 1 1111346666666666543322 245566666665543211 1111
Q ss_pred HHHhhhcCceeEEEEecccc
Q 040527 314 LQLLKGITNTRFLSLSAGII 333 (468)
Q Consensus 314 ~~~l~~~~~l~~L~l~~~~~ 333 (468)
.+..+++|+.|+++.+.+
T Consensus 192 --~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 192 --ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp --GGTTCTTCSEEECCSEEE
T ss_pred --HHccCCCCCEEEccCCcC
Confidence 145677888888877766
No 100
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.32 E-value=8.2e-08 Score=82.10 Aligned_cols=132 Identities=20% Similarity=0.061 Sum_probs=89.1
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLE 212 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le 212 (468)
.++++|++....- ....+|..+..+++|++|+|++|.+... ..+..+++|++|+|+ +.+.+. +. .++.++|+|+
T Consensus 24 ~~L~~L~l~~n~l-~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~--~~-~~~~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNCKS-NDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG--LD-MLAEKLPNLT 98 (168)
T ss_dssp TSCSEEECCSCBC-BTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC--CC-HHHHHCTTCC
T ss_pred ccCCEEECCCCCC-ChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH--HH-HHHhhCCCCC
Confidence 5688888863221 1126777777889999999999998876 667789999999999 888752 55 7777899999
Q ss_pred eEEEeeeeccCCCeee--EEEEcCcccEEEEeeeeecccCCce-eEEEecCCeeEEEEecccc
Q 040527 213 DLLIEIHLEDKHSVTN--LNISSLTLKRLTLSLEKVLFSNTKH-QVMIRAPNLEHLCIYDDTL 272 (468)
Q Consensus 213 ~L~L~~c~~~~~~~~~--~~i~~~~L~~L~l~~~~~~~~~~~~-~i~~~~p~L~~L~l~~~~~ 272 (468)
.|++.+|... ++.. .....++|+.|.+++|......... ......|+|++|++.++..
T Consensus 99 ~L~Ls~N~l~--~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 99 HLNLSGNKLK--DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EEECBSSSCC--SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeccCCccC--cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 9999999765 4321 1113467888888887643211100 1222457777777766643
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.32 E-value=1.3e-07 Score=86.58 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=62.0
Q ss_pred cCceEEEEEEEecceeeecC-CCccccCccceEEecccccCCCCCC-cccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIELP-DNICTCKTLEMLKLKLDFDFKIPTS-RICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
.+++.|++.. .. ...++ ..+..+++|++|+|++|.+...++. +..+++|++|+|+ +.+.+. .. ..+.++++
T Consensus 35 ~~l~~L~L~~--n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~~~l~~ 108 (251)
T 3m19_A 35 ADTEKLDLQS--TG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL--PL-GVFDHLTQ 108 (251)
T ss_dssp TTCCEEECTT--SC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC--CT-TTTTTCTT
T ss_pred CCCCEEEccC--CC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc--Ch-hHhcccCC
Confidence 3677777752 21 22333 3456789999999999999877443 6789999999999 888642 33 66889999
Q ss_pred cceEEEeeeecc
Q 040527 211 LEDLLIEIHLED 222 (468)
Q Consensus 211 Le~L~L~~c~~~ 222 (468)
|+.|+|.+|...
T Consensus 109 L~~L~L~~N~l~ 120 (251)
T 3m19_A 109 LDKLYLGGNQLK 120 (251)
T ss_dssp CCEEECCSSCCC
T ss_pred CCEEEcCCCcCC
Confidence 999999998644
No 102
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.32 E-value=1.9e-06 Score=89.72 Aligned_cols=61 Identities=15% Similarity=-0.002 Sum_probs=28.9
Q ss_pred cccCccceEEecccccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeee
Q 040527 157 CTCKTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHL 220 (468)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~ 220 (468)
..+++|++|+|++|.+..+++ .+.++++|++|+|+ +.+..- -. ..|.++++|++|+|.+|.
T Consensus 73 ~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l--~~-~~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--AL-GAFSGLSSLQKLVAVETN 135 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE--CG-GGGTTCTTCCEEECTTSC
T ss_pred hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC--CH-HHhcCCCCCCEEECCCCc
Confidence 334555555555555544422 23445555555555 444321 11 344555555555555554
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.30 E-value=4.8e-07 Score=87.20 Aligned_cols=112 Identities=19% Similarity=0.148 Sum_probs=67.9
Q ss_pred eeecCCCccccCccceEEecccccCCCCCC-cccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCe
Q 040527 149 LIELPDNICTCKTLEMLKLKLDFDFKIPTS-RICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSV 226 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~ 226 (468)
..++|..+. +++++|+|+++.+..+|+. +.++++|++|+|+ +.+.+. +....|.+++.|+++.+..++ .+
T Consensus 21 Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~--i~~~~f~~L~~l~~~l~~~~N----~l 92 (350)
T 4ay9_X 21 VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV--IEADVFSNLPKLHEIRIEKAN----NL 92 (350)
T ss_dssp CCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCE--ECTTSBCSCTTCCEEEEEEET----TC
T ss_pred CCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCc--cChhHhhcchhhhhhhcccCC----cc
Confidence 456676553 5788999999888877543 6788899999998 766431 221467788888776665544 33
Q ss_pred eeEE----EEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEecc
Q 040527 227 TNLN----ISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDD 270 (468)
Q Consensus 227 ~~~~----i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~ 270 (468)
..+. -..++|+.|.+.++...... ........++..|++.++
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLP--DVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCC--CCTTCCBSSCEEEEEESC
T ss_pred cccCchhhhhccccccccccccccccCC--chhhcccchhhhhhhccc
Confidence 3332 12457888888877532110 011123455666666553
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.29 E-value=2.5e-08 Score=92.19 Aligned_cols=163 Identities=12% Similarity=0.064 Sum_probs=115.7
Q ss_pred cCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCccc
Q 040527 159 CKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLK 237 (468)
Q Consensus 159 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~ 237 (468)
..+++.++++.+.+.+. +....+++|++|+|+ +.+.+. . -+..++.|+.|+|.+|... ++.. .-..++|+
T Consensus 18 l~~l~~l~l~~~~i~~~-~~~~~l~~L~~L~l~~n~i~~l---~--~l~~l~~L~~L~L~~N~i~--~~~~-l~~l~~L~ 88 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSL---A--GMQFFTNLKELHLSHNQIS--DLSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-ECHHHHTTCSEEECTTSCCCCC---T--TGGGCTTCCEEECCSSCCC--CCGG-GTTCSSCC
T ss_pred HHHHHHHHhcCCCcccc-cchhhcCcCcEEECcCCCcccc---h--HHhhCCCCCEEECCCCccC--CChh-hccCCCCC
Confidence 46678888888888776 456789999999999 877643 2 2667999999999999866 4443 11346789
Q ss_pred EEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEEEecCCCeeEEEEeeeeecccccCcCCCCCCCCchhhHHHHh
Q 040527 238 RLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLL 317 (468)
Q Consensus 238 ~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 317 (468)
.|.+++|....... +.. ++|+.|+++++.... . ..+
T Consensus 89 ~L~L~~N~l~~l~~---~~~--~~L~~L~L~~N~l~~-------------------------~--------------~~l 124 (263)
T 1xeu_A 89 ELSVNRNRLKNLNG---IPS--ACLSRLFLDNNELRD-------------------------T--------------DSL 124 (263)
T ss_dssp EEECCSSCCSCCTT---CCC--SSCCEEECCSSCCSB-------------------------S--------------GGG
T ss_pred EEECCCCccCCcCc---ccc--CcccEEEccCCccCC-------------------------C--------------hhh
Confidence 99998886432111 111 788888887764321 0 115
Q ss_pred hhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhHHHHHhcCCCCceEEEee
Q 040527 318 KGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 318 ~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
..+++|+.|+++.+.+ ..+ +.+..+++|+.|+++.+.... + ..+..+++|+.|++.+
T Consensus 125 ~~l~~L~~L~Ls~N~i---~~~--~~l~~l~~L~~L~L~~N~i~~--~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 125 IHLKNLEILSIRNNKL---KSI--VMLGFLSKLEVLDLHGNEITN--T-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp TTCTTCCEEECTTSCC---CBC--GGGGGCTTCCEEECTTSCCCB--C-TTSTTCCCCCEEEEEE
T ss_pred cCcccccEEECCCCcC---CCC--hHHccCCCCCEEECCCCcCcc--h-HHhccCCCCCEEeCCC
Confidence 6788999999999988 333 235678899999997654322 2 4567899999999998
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.27 E-value=1.5e-07 Score=80.47 Aligned_cols=79 Identities=20% Similarity=0.051 Sum_probs=52.9
Q ss_pred CccceEEecccccC--CCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCC-eeeEEEEcCc
Q 040527 160 KTLEMLKLKLDFDF--KIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHS-VTNLNISSLT 235 (468)
Q Consensus 160 ~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~-~~~~~i~~~~ 235 (468)
++|+.|+|++|.+. ..|..+..+++|++|+|+ +.+.+. ..+..++.|+.|++.+|... + +....-..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-----SNLPKLPKLKKLELSENRIF--GGLDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEEESCCCC--SCCCHHHHHCTT
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-----hhhccCCCCCEEECcCCcCc--hHHHHHHhhCCC
Confidence 67899999998887 555556788889999998 776543 23567888888888888755 3 1111111445
Q ss_pred ccEEEEeeee
Q 040527 236 LKRLTLSLEK 245 (468)
Q Consensus 236 L~~L~l~~~~ 245 (468)
|+.|.+++|.
T Consensus 97 L~~L~Ls~N~ 106 (168)
T 2ell_A 97 LTHLNLSGNK 106 (168)
T ss_dssp CCEEECBSSS
T ss_pred CCEEeccCCc
Confidence 5555555554
No 106
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.27 E-value=9.8e-08 Score=92.15 Aligned_cols=82 Identities=20% Similarity=0.273 Sum_probs=49.4
Q ss_pred cCCcccEEEEE-EEec-------CcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCc
Q 040527 181 CFPSLKCLHAE-MYYP-------HSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTK 252 (468)
Q Consensus 181 ~~~~L~~L~L~-~~~~-------~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~ 252 (468)
.|++|++|.+. +... +...+. .++..+|.|++|.|.+|... .+.. +..++|+.|.+..|.... ...
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l--~l~~--~~~~~L~~L~L~~~~l~~-~~l 210 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL--SIGK--KPRPNLKSLEIISGGLPD-SVV 210 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC--BCCS--CBCTTCSEEEEECSBCCH-HHH
T ss_pred hcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc--eecc--ccCCCCcEEEEecCCCCh-HHH
Confidence 56667777665 4321 123477 88899999999999987421 2222 346788888888765211 111
Q ss_pred eeEE-EecCCeeEEEEe
Q 040527 253 HQVM-IRAPNLEHLCIY 268 (468)
Q Consensus 253 ~~i~-~~~p~L~~L~l~ 268 (468)
..+. ...|+|++|+++
T Consensus 211 ~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHSBCTTCCEEEEE
T ss_pred HHHHHccCCCCcEEEEe
Confidence 1111 145788888775
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.22 E-value=2e-06 Score=88.03 Aligned_cols=183 Identities=16% Similarity=0.173 Sum_probs=113.6
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLE 212 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le 212 (468)
.+++.|++.... ...+|..++ ++|++|+|++|.+..+| ..+++|++|+|+ +.+.+ +. . +.+ +|+
T Consensus 59 ~~L~~L~Ls~n~---L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~---ip-~-l~~--~L~ 123 (571)
T 3cvr_A 59 NQFSELQLNRLN---LSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST---LP-E-LPA--SLK 123 (571)
T ss_dssp TTCSEEECCSSC---CSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC---CC-C-CCT--TCC
T ss_pred CCccEEEeCCCC---CCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC---cc-h-hhc--CCC
Confidence 477788776321 234776554 78899999998888764 567889999998 87754 44 4 332 888
Q ss_pred eEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEEEecCCCeeEEEEeeee
Q 040527 213 DLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDIEF 292 (468)
Q Consensus 213 ~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~ 292 (468)
.|+|.+|... ++.. ..++|+.|.+++|.... +.. ..++|+.|+++++....+.... ++|+.+++....
T Consensus 124 ~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N~L~~lp~l~-~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 124 HLDVDNNQLT--MLPE---LPALLEYINADNNQLTM---LPE---LPTSLEVLSVRNNQLTFLPELP-ESLEALDVSTNL 191 (571)
T ss_dssp EEECCSSCCS--CCCC---CCTTCCEEECCSSCCSC---CCC---CCTTCCEEECCSSCCSCCCCCC-TTCCEEECCSSC
T ss_pred EEECCCCcCC--CCCC---cCccccEEeCCCCccCc---CCC---cCCCcCEEECCCCCCCCcchhh-CCCCEEECcCCC
Confidence 9999888766 5444 46778888888876421 121 4678888888887654332211 677777665432
Q ss_pred ecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecC
Q 040527 293 DKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEES 360 (468)
Q Consensus 293 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~ 360 (468)
+...|.+ .. .+......++.|+++.+.+ ..+.. .+..+++|+.|+|+.+..
T Consensus 192 ----L~~lp~~------~~---~L~~~~~~L~~L~Ls~N~l---~~lp~-~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 192 ----LESLPAV------PV---RNHHSEETEIFFRCRENRI---THIPE-NILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ----CSSCCCC------C-----------CCEEEECCSSCC---CCCCG-GGGGSCTTEEEECCSSSC
T ss_pred ----CCchhhH------HH---hhhcccccceEEecCCCcc---eecCH-HHhcCCCCCEEEeeCCcC
Confidence 2222221 11 2233344459999999887 43321 234588899998876644
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.20 E-value=3.6e-07 Score=93.58 Aligned_cols=173 Identities=14% Similarity=0.106 Sum_probs=118.2
Q ss_pred CccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcccE
Q 040527 160 KTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLKR 238 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~~ 238 (468)
.+|+.|+|+++.+..+|... +++|++|+|+ +.+.. +. ..+++|+.|+|.+|... ++.. ...+|+.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~---ip----~~l~~L~~L~Ls~N~l~--~ip~---l~~~L~~ 124 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALIS---LP----ELPASLEYLDACDNRLS--TLPE---LPASLKH 124 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSC---CC----CCCTTCCEEECCSSCCS--CCCC---CCTTCCE
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcc---cc----cccCCCCEEEccCCCCC--Ccch---hhcCCCE
Confidence 58999999999998875433 5899999999 87753 22 45799999999999876 5544 2338999
Q ss_pred EEEeeeeecccCCceeEEEecCCeeEEEEeccccceEEEecCCCeeEEEEeeeeecccccCcCCCCCCCCchhhHHHHhh
Q 040527 239 LTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLLK 318 (468)
Q Consensus 239 L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 318 (468)
|.+++|.... +.. ..++|+.|+++++....+.- .+++|+.+++.... +...|. +.
T Consensus 125 L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~----L~~lp~--------------l~ 179 (571)
T 3cvr_A 125 LDVDNNQLTM---LPE---LPALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQ----LTFLPE--------------LP 179 (571)
T ss_dssp EECCSSCCSC---CCC---CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSC----CSCCCC--------------CC
T ss_pred EECCCCcCCC---CCC---cCccccEEeCCCCccCcCCC-cCCCcCEEECCCCC----CCCcch--------------hh
Confidence 9999987532 222 57899999999986654433 56778887765432 111221 11
Q ss_pred hcCceeEEEEecccccccccccccCCCCCCCc-------ceEEEEEecCCchhHHHHHhcCCCCceEEEee
Q 040527 319 GITNTRFLSLSAGIISALDCAFEDYIPTFPYL-------TYLKVEIEESGFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 319 ~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L-------~~L~l~~~~~~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
++|+.|+++.+.+ ..+.. ++. +| +.|+|+.+.. ..++.-+..+++|+.|+|++
T Consensus 180 --~~L~~L~Ls~N~L---~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l--~~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 180 --ESLEALDVSTNLL---ESLPA--VPV--RNHHSEETEIFFRCRENRI--THIPENILSLDPTCTIILED 239 (571)
T ss_dssp --TTCCEEECCSSCC---SSCCC--CC----------CCEEEECCSSCC--CCCCGGGGGSCTTEEEECCS
T ss_pred --CCCCEEECcCCCC---Cchhh--HHH--hhhcccccceEEecCCCcc--eecCHHHhcCCCCCEEEeeC
Confidence 7899999999887 33311 222 56 8888876533 23444344589999999887
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.20 E-value=2.9e-07 Score=82.56 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=41.1
Q ss_pred eecCCCccccCccceEEecccccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeec
Q 040527 150 IELPDNICTCKTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLE 221 (468)
Q Consensus 150 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~ 221 (468)
..+|..+. ++|+.|+|+++.+...++ .+..+++|++|+|+ +.+... .. ..|.+++.|+.|+|.+|..
T Consensus 24 ~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~--~~-~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 24 TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL--AP-DAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE--CT-TTTTTCSSCCEEECCSSCC
T ss_pred CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc--CH-HHhhCCcCCCEEECCCCcC
Confidence 34554433 567777777777665533 45567777777777 665431 12 4566677777777777653
No 110
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=2.1e-07 Score=79.38 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=56.7
Q ss_pred eeecCCCccccCccceEEecccccCCC-CCCcccCCcccEEEEE-EEecCcccchhhhhc---cCCccceEEEeeee-cc
Q 040527 149 LIELPDNICTCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MYYPHSTCITEKLFT---ICPVLEDLLIEIHL-ED 222 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~---~cp~Le~L~L~~c~-~~ 222 (468)
...+|......-.|+.|+|++|.+.+. .....++++|++|+|+ |...++..+. .+.. .|+.|++|+|.+|. ++
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCC
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCC
Confidence 345665433445788888888876553 1224577788888888 7655555566 6665 26778888888875 33
Q ss_pred CCCeeeEEEEcCcccEEEEeeee
Q 040527 223 KHSVTNLNISSLTLKRLTLSLEK 245 (468)
Q Consensus 223 ~~~~~~~~i~~~~L~~L~l~~~~ 245 (468)
+.++..+. .+++|+.|.+++|.
T Consensus 129 D~Gl~~L~-~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 129 DKGIIALH-HFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHHHGG-GCTTCCEEEEESCT
T ss_pred HHHHHHHh-cCCCCCEEECCCCC
Confidence 21333332 34555555555554
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.09 E-value=1.5e-07 Score=78.61 Aligned_cols=84 Identities=18% Similarity=0.051 Sum_probs=47.9
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLE 212 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le 212 (468)
.++++|.+....- ....+|..+..+++|+.|++++|.+... ..+..+++|++|+|+ +.+.+. +. ..+.+++.|+
T Consensus 17 ~~l~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~--~~-~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRS-NEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG--LE-VLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBC-BTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC--TH-HHHHHCTTCC
T ss_pred ccCeEEEccCCcC-ChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch--HH-HHhhhCCCCC
Confidence 3455665542111 0124555555666677777777666654 445566667777776 665431 44 5555666677
Q ss_pred eEEEeeeecc
Q 040527 213 DLLIEIHLED 222 (468)
Q Consensus 213 ~L~L~~c~~~ 222 (468)
.|++.+|...
T Consensus 92 ~L~ls~N~i~ 101 (149)
T 2je0_A 92 HLNLSGNKIK 101 (149)
T ss_dssp EEECTTSCCC
T ss_pred EEECCCCcCC
Confidence 7777666543
No 112
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.08 E-value=1.6e-06 Score=79.89 Aligned_cols=37 Identities=30% Similarity=0.603 Sum_probs=34.5
Q ss_pred ccccCCCChHHHHHHhcCCCchhhh-hhhhhhhhHHHH
Q 040527 22 MDRISSLPDEILCHILSFLPIKCAV-QTCILSSRWKHL 58 (468)
Q Consensus 22 ~d~~s~LPd~vL~~Ils~L~~~~~~-r~s~vskrWr~l 58 (468)
...+..||||++..||++||.++++ +++.|||+||.+
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 4578899999999999999999999 999999999975
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.07 E-value=1.5e-06 Score=78.37 Aligned_cols=69 Identities=17% Similarity=0.040 Sum_probs=47.1
Q ss_pred eeecCCCccccCccceEEecccccCCC-CCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeecc
Q 040527 149 LIELPDNICTCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLED 222 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~ 222 (468)
...+|..+. ++|++|+|++|.+... +..+.++++|++|+|+ +.+... -. ..+.+++.|+.|+|.+|...
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i--~~-~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL--PV-GVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CT-TTTTTCTTCCEEECCSSCCC
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc--Ch-hhcccCCCcCEEECCCCcCC
Confidence 345555433 6788888888887766 3346678888888888 776432 22 55677888888888887643
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.04 E-value=1.3e-06 Score=77.35 Aligned_cols=68 Identities=16% Similarity=0.066 Sum_probs=46.9
Q ss_pred eecCCCccccCccceEEecccccCCCCCC-cccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeecc
Q 040527 150 IELPDNICTCKTLEMLKLKLDFDFKIPTS-RICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLED 222 (468)
Q Consensus 150 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~ 222 (468)
..+|..+ .++|++|+|+++.+...++. +..+++|++|+|+ +.+.+. .. ..+.+++.|++|+|.+|...
T Consensus 20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL--PN-GVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC--CT-TTTTTCTTCCEEECCSSCCC
T ss_pred cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc--Ch-hhcCCCCCcCEEECCCCcCC
Confidence 3455433 25788888888887766443 4678888888888 776532 23 55777888888888887543
No 115
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.04 E-value=2.1e-06 Score=89.30 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=52.8
Q ss_pred eeecCCCccccCccceEEecccccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeecc
Q 040527 149 LIELPDNICTCKTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLED 222 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~ 222 (468)
-.++|..+- +++++|+|+++.+...++ .+.++++|++|+|+ +.+.. +.+..|.++++|++|+|.+|...
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~---i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT---IEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCC
T ss_pred cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC---cChhHhcCCCCCCEEEccCCcCC
Confidence 445665432 478999999999887754 47889999999999 87753 32156889999999999998643
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.03 E-value=2.2e-07 Score=77.63 Aligned_cols=121 Identities=17% Similarity=0.088 Sum_probs=84.8
Q ss_pred CccceEEecccccC--CCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCC-eeeEEEEcCc
Q 040527 160 KTLEMLKLKLDFDF--KIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHS-VTNLNISSLT 235 (468)
Q Consensus 160 ~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~-~~~~~i~~~~ 235 (468)
++|+.|++++|.+. ..|.....+++|++|+|+ +.+.+. ..+.+++.|+.|++.+|... + +....-..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-----ANLPKLNKLKKLELSDNRVS--GGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-----TTCCCCTTCCEEECCSSCCC--SCTHHHHHHCTT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-----hhhhcCCCCCEEECCCCccc--chHHHHhhhCCC
Confidence 78999999999887 556666889999999999 877643 23667999999999999865 3 2222223678
Q ss_pred ccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceE------EEecCCCeeEEEE
Q 040527 236 LKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY------MVHELHSLTEVHF 288 (468)
Q Consensus 236 L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~------~~~~~~~L~~~~l 288 (468)
|+.|.+++|...... ........|+|++|+++++..... .+..+++|+.+++
T Consensus 90 L~~L~ls~N~i~~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 90 LTHLNLSGNKIKDLS-TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CCEEECTTSCCCSHH-HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCEEECCCCcCCChH-HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 999999998642100 001123568999999998865432 3566777777643
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.02 E-value=6.5e-06 Score=79.22 Aligned_cols=213 Identities=17% Similarity=0.161 Sum_probs=128.2
Q ss_pred cCceEEEEEEEecceeeecCCCc-cccCccceEEecccccCC-CCC-CcccCCcccEEEE-E-EEecCcccchhhhhccC
Q 040527 134 RNVGDIELNHVYVDVLIELPDNI-CTCKTLEMLKLKLDFDFK-IPT-SRICFPSLKCLHA-E-MYYPHSTCITEKLFTIC 208 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~-~~~-~~~~~~~L~~L~L-~-~~~~~~~~l~~~l~~~c 208 (468)
.++++|++.. . ....+|... ..+++|++|+|++|.+.. +++ .+.++++|+++.. . ..+.. +....|.++
T Consensus 30 ~~l~~L~Ls~--N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~---l~~~~f~~l 103 (350)
T 4ay9_X 30 RNAIELRFVL--T-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY---INPEAFQNL 103 (350)
T ss_dssp TTCSEEEEES--C-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE---ECTTSBCCC
T ss_pred CCCCEEEccC--C-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc---cCchhhhhc
Confidence 4788898873 2 245777654 568999999999998644 333 3567888776544 4 44432 321668899
Q ss_pred CccceEEEeeeeccCCCeeeE-EEEcCcccEEEEeeeeecccCCceeEEE-----ecCCeeEEEEeccccceEEE--ecC
Q 040527 209 PVLEDLLIEIHLEDKHSVTNL-NISSLTLKRLTLSLEKVLFSNTKHQVMI-----RAPNLEHLCIYDDTLVSYMV--HEL 280 (468)
Q Consensus 209 p~Le~L~L~~c~~~~~~~~~~-~i~~~~L~~L~l~~~~~~~~~~~~~i~~-----~~p~L~~L~l~~~~~~~~~~--~~~ 280 (468)
++|+.|++.+|... .+... .....++..|.+.++. ....+.. ....++.|+++++....+.- ...
T Consensus 104 ~~L~~L~l~~n~l~--~~~~~~~~~~~~l~~l~l~~~~-----~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~ 176 (350)
T 4ay9_X 104 PNLQYLLISNTGIK--HLPDVHKIHSLQKVLLDIQDNI-----NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG 176 (350)
T ss_dssp TTCCEEEEEEECCS--SCCCCTTCCBSSCEEEEEESCT-----TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT
T ss_pred cccccccccccccc--cCCchhhcccchhhhhhhcccc-----ccccccccchhhcchhhhhhccccccccCCChhhccc
Confidence 99999999999754 33222 1234457777776653 2222221 12468888888876544321 222
Q ss_pred CCeeEEEEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecC
Q 040527 281 HSLTEVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEES 360 (468)
Q Consensus 281 ~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~ 360 (468)
.+|..+.+...- .+...|. +.+..+++|+.|+++.+.+ ..+. ...|.+|++|.+..+.
T Consensus 177 ~~L~~l~l~~~n---~l~~i~~------------~~f~~l~~L~~LdLs~N~l---~~lp---~~~~~~L~~L~~l~~~- 234 (350)
T 4ay9_X 177 TQLDELNLSDNN---NLEELPN------------DVFHGASGPVILDISRTRI---HSLP---SYGLENLKKLRARSTY- 234 (350)
T ss_dssp EEEEEEECTTCT---TCCCCCT------------TTTTTEECCSEEECTTSCC---CCCC---SSSCTTCCEEECTTCT-
T ss_pred cchhHHhhccCC---cccCCCH------------HHhccCcccchhhcCCCCc---CccC---hhhhccchHhhhccCC-
Confidence 344444331100 1112221 3357889999999999987 4442 2346778877764432
Q ss_pred CchhHHHHHhcCCCCceEEEee
Q 040527 361 GFRLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 361 ~~~~l~~ll~~~p~L~~L~l~~ 382 (468)
....++. +..+++|+.+++..
T Consensus 235 ~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 235 NLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TCCCCCC-TTTCCSCCEEECSC
T ss_pred CcCcCCC-chhCcChhhCcCCC
Confidence 2223332 56788899888876
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.97 E-value=2.1e-07 Score=81.95 Aligned_cols=110 Identities=22% Similarity=0.221 Sum_probs=77.5
Q ss_pred cCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEE
Q 040527 152 LPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLN 230 (468)
Q Consensus 152 lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~ 230 (468)
+|..+..+++|++|+|++|.+...| ....+++|++|+|+ +.+.+ +. ..+..+|.|+.|++.+|... ++..+
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~---l~-~~~~~~~~L~~L~L~~N~l~--~l~~~- 111 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK---IE-NLDAVADTLEELWISYNQIA--SLSGI- 111 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS---CS-SHHHHHHHCSEEEEEEEECC--CHHHH-
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc---cc-chhhcCCcCCEEECcCCcCC--cCCcc-
Confidence 3446667789999999999888764 77788999999999 88763 56 67777899999999999866 44321
Q ss_pred EEcCcccEEEEeeeeecccCCcee--EEEecCCeeEEEEecccc
Q 040527 231 ISSLTLKRLTLSLEKVLFSNTKHQ--VMIRAPNLEHLCIYDDTL 272 (468)
Q Consensus 231 i~~~~L~~L~l~~~~~~~~~~~~~--i~~~~p~L~~L~l~~~~~ 272 (468)
...++|+.|.+++|... .... .....++|++|+++++..
T Consensus 112 ~~l~~L~~L~l~~N~i~---~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKIT---NWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHHSSEEEESEEECC---CHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ccCCCCCEEECCCCcCC---chhHHHHHhcCCCCCEEEecCCcc
Confidence 12457888888887632 1111 112457788888877643
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.94 E-value=8.9e-07 Score=77.85 Aligned_cols=40 Identities=13% Similarity=-0.031 Sum_probs=26.3
Q ss_pred CcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeecc
Q 040527 178 SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLED 222 (468)
Q Consensus 178 ~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~ 222 (468)
.+..+++|++|+|+ +.+.+-. .+.+++.|+.|++.+|...
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-----~~~~l~~L~~L~l~~n~l~ 83 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-----SLSGMENLRILSLGRNLIK 83 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-----CHHHHTTCCEEEEEEEEEC
T ss_pred HHhcCCCCCEEECCCCCCcccc-----ccccCCCCCEEECCCCCcc
Confidence 35567777777777 7665421 2556777777777777643
No 120
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=5.4e-07 Score=76.77 Aligned_cols=87 Identities=8% Similarity=-0.025 Sum_probs=63.5
Q ss_pred cCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeee-ccCCCeeeEEEE---cCcccEEEEeeeeecccCCceeE
Q 040527 181 CFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHL-EDKHSVTNLNIS---SLTLKRLTLSLEKVLFSNTKHQV 255 (468)
Q Consensus 181 ~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~-~~~~~~~~~~i~---~~~L~~L~l~~~~~~~~~~~~~i 255 (468)
.-..|++|+|+ +.+.+. .+. .+ ++|++|++|+|.+|. +++.++..+.-. +++|+.|++++|...+|.++..+
T Consensus 59 ~~~~L~~LDLs~~~Itd~-GL~-~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSI-GFD-HM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp TCCCEEEEEEESCCCCGG-GGG-GG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred CCceEeEEeCcCCCccHH-HHH-Hh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 34579999999 987664 477 65 799999999999996 332133334321 35799999999986665555554
Q ss_pred EEecCCeeEEEEeccc
Q 040527 256 MIRAPNLEHLCIYDDT 271 (468)
Q Consensus 256 ~~~~p~L~~L~l~~~~ 271 (468)
. .+|+|++|++++|.
T Consensus 136 ~-~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 136 H-HFRNLKYLFLSDLP 150 (176)
T ss_dssp G-GCTTCCEEEEESCT
T ss_pred h-cCCCCCEEECCCCC
Confidence 3 57999999998874
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.92 E-value=1.5e-06 Score=74.83 Aligned_cols=106 Identities=13% Similarity=0.018 Sum_probs=58.5
Q ss_pred cccCccceEEecccccCCCCCCcccC-CcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEE-EEc
Q 040527 157 CTCKTLEMLKLKLDFDFKIPTSRICF-PSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLN-ISS 233 (468)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~~~~~~~~-~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~-i~~ 233 (468)
..+.+|+.|++++|.+... +....+ ++|++|+|+ +.+.+. . .+.+++.|+.|++.+|... ++..-. -..
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~---~--~l~~l~~L~~L~Ls~N~l~--~~~~~~~~~l 87 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL---D--GFPLLRRLKTLLVNNNRIC--RIGEGLDQAL 87 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE---C--CCCCCSSCCEEECCSSCCC--EECSCHHHHC
T ss_pred CCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc---c--ccccCCCCCEEECCCCccc--ccCcchhhcC
Confidence 4456778888888777765 333333 478888887 766532 2 2556777888888777543 221100 123
Q ss_pred CcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccc
Q 040527 234 LTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDT 271 (468)
Q Consensus 234 ~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~ 271 (468)
++|+.|.+++|......... .....|+|+.|+++++.
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~-~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLD-PLASLKSLTYLCILRNP 124 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGG-GGGGCTTCCEEECCSSG
T ss_pred CCCCEEECCCCcCCcchhhH-hhhcCCCCCEEEecCCC
Confidence 56666666666432100000 11134667777666653
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.92 E-value=2.2e-06 Score=75.80 Aligned_cols=83 Identities=17% Similarity=0.132 Sum_probs=62.3
Q ss_pred cCceEEEEEEEecceeeecCCC-ccccCccceEEecccccCCCCCC-cccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIELPDN-ICTCKTLEMLKLKLDFDFKIPTS-RICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
.++++|++.... ...++.. +..+++|++|+|+++.+...++. +..+++|++|+|+ +.+.+. .. ..+.+++.
T Consensus 28 ~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~-~~~~~l~~ 101 (208)
T 2o6s_A 28 AQTTYLDLETNS---LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL--PN-GVFDKLTQ 101 (208)
T ss_dssp TTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CT-TTTTTCTT
T ss_pred CCCcEEEcCCCc---cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc--CH-hHhcCccC
Confidence 367788876321 2355554 34689999999999998877544 5789999999999 887642 23 56788999
Q ss_pred cceEEEeeeecc
Q 040527 211 LEDLLIEIHLED 222 (468)
Q Consensus 211 Le~L~L~~c~~~ 222 (468)
|+.|++.+|...
T Consensus 102 L~~L~L~~N~l~ 113 (208)
T 2o6s_A 102 LKELALNTNQLQ 113 (208)
T ss_dssp CCEEECCSSCCC
T ss_pred CCEEEcCCCcCc
Confidence 999999998644
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.91 E-value=2e-06 Score=77.53 Aligned_cols=128 Identities=15% Similarity=0.103 Sum_probs=84.6
Q ss_pred cCceEEEEEEEecceeeec-CCCccccCccceEEecccccCCCCCC-cccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIEL-PDNICTCKTLEMLKLKLDFDFKIPTS-RICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
.+++.|++.. .. ...+ |..+..+++|++|+|++|.+...++. +.++++|++|+|+ +.+... .. ..+.+++.
T Consensus 40 ~~L~~L~Ls~--n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l--~~-~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHD--NQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL--PS-AVFDRLVH 113 (229)
T ss_dssp TTCSEEECCS--SC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CT-TTTTTCTT
T ss_pred CCCCEEEcCC--Cc-cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc--Ch-hHhCcchh
Confidence 5788888873 22 2233 45566789999999999999877544 5789999999999 887642 23 56889999
Q ss_pred cceEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccc
Q 040527 211 LEDLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDT 271 (468)
Q Consensus 211 Le~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~ 271 (468)
|+.|+|.+|... .+.......++|+.|.++++....... ...-..++|+.|++.++.
T Consensus 114 L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 114 LKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECTTSC
T ss_pred hCeEeccCCccc--ccCcccccCCCCCEEECCCCcCCccCH--HHHhCCCCCCEEEeeCCC
Confidence 999999999754 321111124567777777765321000 001124667777666653
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.91 E-value=1.5e-06 Score=77.83 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=22.1
Q ss_pred hhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEe
Q 040527 318 KGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIE 358 (468)
Q Consensus 318 ~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~ 358 (468)
..+++|+.|+++.+.+ ..+....+..+++|+.|+++.+
T Consensus 126 ~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 126 IGLSSVRLLSLYDNQI---TTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TTCTTCSEEECTTSCC---CCBCTTTTTTCTTCCEEECCSC
T ss_pred CCCccCCEEECCCCcC---CEECHHHhcCCCCCCEEEecCc
Confidence 4556677777777666 3332233455666777766543
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.88 E-value=1.1e-06 Score=78.69 Aligned_cols=147 Identities=15% Similarity=0.153 Sum_probs=90.4
Q ss_pred ceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcccEEEE
Q 040527 163 EMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLKRLTL 241 (468)
Q Consensus 163 ~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~~L~l 241 (468)
+.++++++.+..+|.. -.+.+++|+|+ +.+.... -. ..+.+++.|+.|+|.++... + +. ..
T Consensus 14 ~~l~~s~n~l~~iP~~--~~~~~~~L~L~~N~l~~~~-~~-~~~~~l~~L~~L~L~~N~i~--~---i~--~~------- 75 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH--IPQYTAELRLNNNEFTVLE-AT-GIFKKLPQLRKINFSNNKIT--D---IE--EG------- 75 (220)
T ss_dssp TEEECCSSCCSSCCSC--CCTTCSEEECCSSCCCEEC-CC-CCGGGCTTCCEEECCSSCCC--E---EC--TT-------
T ss_pred CEeEeCCCCcccCccC--CCCCCCEEEcCCCcCCccC-ch-hhhccCCCCCEEECCCCcCC--E---EC--HH-------
Confidence 5788888887776432 24567888888 7765421 23 45778888888888887643 1 11 00
Q ss_pred eeeeecccCCceeEEEecCCeeEEEEeccccceEEEecCCCeeEEEEeeeeecccccCcCCCCCCCCchhhHHHHhhhcC
Q 040527 242 SLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGIT 321 (468)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 321 (468)
.. -..++|++|+++++.... .+ ...+..++
T Consensus 76 ---------~~----~~l~~L~~L~Ls~N~l~~-------------------------~~------------~~~~~~l~ 105 (220)
T 2v70_A 76 ---------AF----EGASGVNEILLTSNRLEN-------------------------VQ------------HKMFKGLE 105 (220)
T ss_dssp ---------TT----TTCTTCCEEECCSSCCCC-------------------------CC------------GGGGTTCS
T ss_pred ---------Hh----CCCCCCCEEECCCCccCc-------------------------cC------------HhHhcCCc
Confidence 00 023566666666653311 00 12245778
Q ss_pred ceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhH-HHHHhcCCCCceEEEee
Q 040527 322 NTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLL-PIILRSLPNLGAMEIDF 382 (468)
Q Consensus 322 ~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l-~~ll~~~p~L~~L~l~~ 382 (468)
+|+.|+++.+.+ ..+....+..+++|+.|+|+.+.. ..+ +..+..+++|+.|++.+
T Consensus 106 ~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 106 SLKTLMLRSNRI---TCVGNDSFIGLSSVRLLSLYDNQI--TTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp SCCEEECTTSCC---CCBCTTSSTTCTTCSEEECTTSCC--CCBCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcC---CeECHhHcCCCccCCEEECCCCcC--CEECHHHhcCCCCCCEEEecC
Confidence 889999998887 444333456778888888865432 122 34566788888888876
No 126
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.84 E-value=4e-06 Score=76.37 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=32.1
Q ss_pred ccCCCChHHHHHHhcCCCchhhhhhhhhhhhHHH
Q 040527 24 RISSLPDEILCHILSFLPIKCAVQTCILSSRWKH 57 (468)
Q Consensus 24 ~~s~LPd~vL~~Ils~L~~~~~~r~s~vskrWr~ 57 (468)
-++.||+||+.+||+||+.+|+++++.|||+||.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999995
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.79 E-value=1.7e-06 Score=83.70 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=40.9
Q ss_pred eecCCCccccCccceEEecccccCCCCCC-cc-cCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeec
Q 040527 150 IELPDNICTCKTLEMLKLKLDFDFKIPTS-RI-CFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLE 221 (468)
Q Consensus 150 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~~-~~-~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~ 221 (468)
..+|..+. +.++.|+|+++.+...++. +. .+++|++|+|+ +.+... .. ..|.+++.|+.|+|.+|..
T Consensus 31 ~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i--~~-~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 31 PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI--SS-EAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE--CT-TTTTTCTTCCEEECCSSCC
T ss_pred CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc--Ch-hhccCCCCCCEEECCCCcC
Confidence 34554332 3577777777777665333 33 67777777777 666432 12 4466777777777777653
No 128
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.78 E-value=4.2e-06 Score=74.87 Aligned_cols=128 Identities=15% Similarity=0.119 Sum_probs=82.9
Q ss_pred cCceEEEEEEEecceeeecCC-CccccCccceEEecccccCCC-CCCcccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIELPD-NICTCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
.++++|.+.. . ....+|. .+..+++|++|+|++|.+... +..+.++++|++|+|+ +.+... -. .+|.+++.
T Consensus 32 ~~l~~L~l~~--n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~-~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQ--N-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL--PK-SLFEGLFS 105 (220)
T ss_dssp TTCCEEECCS--S-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC--CT-TTTTTCTT
T ss_pred cCCCEEECCC--C-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc--CH-hHccCCCC
Confidence 4677787762 2 1334554 455679999999999998776 4567889999999999 887642 23 66889999
Q ss_pred cceEEEeeeeccCCCeeeEEE-EcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccc
Q 040527 211 LEDLLIEIHLEDKHSVTNLNI-SSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDT 271 (468)
Q Consensus 211 Le~L~L~~c~~~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~ 271 (468)
|+.|+|.+|... ++..-.+ ..++|+.|.++++....... ...-..++|+.|+++++.
T Consensus 106 L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 106 LQLLLLNANKIN--CLRVDAFQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCCCC--EeCHHHcCCCCCCCEEECCCCcCCEECH--HHHhCCCCCCEEEeCCCC
Confidence 999999999755 3211111 23567777777765321100 001124667777666653
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.71 E-value=3.3e-06 Score=72.60 Aligned_cols=133 Identities=11% Similarity=0.071 Sum_probs=73.3
Q ss_pred CCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEEcCcccEEEEeeeeecccCCceeE
Q 040527 177 TSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKVLFSNTKHQV 255 (468)
Q Consensus 177 ~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~i 255 (468)
+.+..+++|++|+|+ +.+.. +. .+...+|.|+.|++.+|... ++..
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~---i~-~~~~~~~~L~~L~Ls~N~l~--~~~~--------------------------- 59 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV---IE-NLGATLDQFDAIDFSDNEIR--KLDG--------------------------- 59 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS---CC-CGGGGTTCCSEEECCSSCCC--EECC---------------------------
T ss_pred HhcCCcCCceEEEeeCCCCch---hH-HhhhcCCCCCEEECCCCCCC--cccc---------------------------
Confidence 334567788888888 76653 34 55555667888888887644 2100
Q ss_pred EEecCCeeEEEEeccccceEEEecCCCeeEEEEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCceeEEEEecccccc
Q 040527 256 MIRAPNLEHLCIYDDTLVSYMVHELHSLTEVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTRFLSLSAGIISA 335 (468)
Q Consensus 256 ~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~ 335 (468)
.-..++|++|+++++....+ | ..++..+++++.|+++.+.+
T Consensus 60 l~~l~~L~~L~Ls~N~l~~~-------------------------~------------~~~~~~l~~L~~L~L~~N~i-- 100 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNNRICRI-------------------------G------------EGLDQALPDLTELILTNNSL-- 100 (176)
T ss_dssp CCCCSSCCEEECCSSCCCEE-------------------------C------------SCHHHHCTTCCEEECCSCCC--
T ss_pred cccCCCCCEEECCCCccccc-------------------------C------------cchhhcCCCCCEEECCCCcC--
Confidence 01235566665555532111 0 01234566666666666655
Q ss_pred cccccc-cCCCCCCCcceEEEEEecCC-c-hhHHHHHhcCCCCceEEEee
Q 040527 336 LDCAFE-DYIPTFPYLTYLKVEIEESG-F-RLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 336 ~~~l~~-~~~~~~~~L~~L~l~~~~~~-~-~~l~~ll~~~p~L~~L~l~~ 382 (468)
..+.. ..+..+++|+.|+++.+... . ..-..++..+|+|+.|++..
T Consensus 101 -~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 101 -VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp -CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred -CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 22211 13445666666666654331 1 22234577889999888876
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.68 E-value=8.7e-06 Score=78.69 Aligned_cols=132 Identities=20% Similarity=0.114 Sum_probs=86.3
Q ss_pred cCceEEEEEEEecceeeecCCCcc--ccCccceEEecccccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCC
Q 040527 134 RNVGDIELNHVYVDVLIELPDNIC--TCKTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICP 209 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~--~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp 209 (468)
..++.|++.. . ....++...+ .+++|+.|+|++|.+...++ .+.++++|++|+|+ +.+... .. ..|.+++
T Consensus 39 ~~l~~L~Ls~--N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~--~~-~~~~~l~ 112 (361)
T 2xot_A 39 SYTALLDLSH--N-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL--DE-FLFSDLQ 112 (361)
T ss_dssp TTCSEEECCS--S-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE--CT-TTTTTCT
T ss_pred CCCCEEECCC--C-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC--CH-HHhCCCc
Confidence 3567777762 2 2345555544 78999999999999887744 47789999999999 887542 23 5688999
Q ss_pred ccceEEEeeeeccCCCeeeEEE-EcCcccEEEEeeeeecccCCce-eEEEecCCeeEEEEeccccc
Q 040527 210 VLEDLLIEIHLEDKHSVTNLNI-SSLTLKRLTLSLEKVLFSNTKH-QVMIRAPNLEHLCIYDDTLV 273 (468)
Q Consensus 210 ~Le~L~L~~c~~~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~-~i~~~~p~L~~L~l~~~~~~ 273 (468)
+|+.|+|.+|... .+..-.+ ..++|+.|.+++|......... .-....++|+.|+++++...
T Consensus 113 ~L~~L~L~~N~i~--~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 113 ALEVLLLYNNHIV--VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp TCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCCEEECCCCccc--EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 9999999999754 2211111 2367888888887632110000 00024678888888877543
No 131
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.68 E-value=6e-07 Score=87.20 Aligned_cols=70 Identities=21% Similarity=0.203 Sum_probs=42.8
Q ss_pred HHHHhhhcCceeEEEEeccccccccccc-ccCCCCCCCcceEEEEEecCCc---hhHHHHHhcCCCCceEEEee
Q 040527 313 MLQLLKGITNTRFLSLSAGIISALDCAF-EDYIPTFPYLTYLKVEIEESGF---RLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 313 ~~~~l~~~~~l~~L~l~~~~~~~~~~l~-~~~~~~~~~L~~L~l~~~~~~~---~~l~~ll~~~p~L~~L~l~~ 382 (468)
+...+..+++|+.|+++.+.+.+..... ...+...++|+.|+|+.+.... ..+...+..+|+|+.|+|++
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 4445566677777777777662211000 1123445577778777665533 45566677889999999987
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.56 E-value=9.9e-06 Score=70.78 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=50.2
Q ss_pred eecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeee
Q 040527 150 IELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTN 228 (468)
Q Consensus 150 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~ 228 (468)
..+|..++ ++|+.|+|+++.+..+|..+.++++|++|+|+ +.+.+. .. ..|.+++.|+.|+|.++... .+..
T Consensus 23 ~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i--~~-~~f~~l~~L~~L~Ls~N~l~--~i~~ 95 (193)
T 2wfh_A 23 KVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL--SN-QSFSNMTQLLTLILSYNRLR--CIPP 95 (193)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC--CT-TTTTTCTTCCEEECCSSCCC--BCCT
T ss_pred CcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe--CH-hHccCCCCCCEEECCCCccC--EeCH
Confidence 34554332 46777777777776655556667777777777 666532 22 44666777777777776543 2111
Q ss_pred EEE-EcCcccEEEEeeee
Q 040527 229 LNI-SSLTLKRLTLSLEK 245 (468)
Q Consensus 229 ~~i-~~~~L~~L~l~~~~ 245 (468)
-.+ ..++|+.|.++++.
T Consensus 96 ~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 96 RTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred HHhCCCCCCCEEECCCCC
Confidence 001 12455555555553
No 133
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.54 E-value=2.3e-05 Score=77.97 Aligned_cols=41 Identities=29% Similarity=0.454 Sum_probs=37.3
Q ss_pred CCCccccCCCChHHHHHHhcCCCchhhhhhhhhhhhHHHHh
Q 040527 19 QEKMDRISSLPDEILCHILSFLPIKCAVQTCILSSRWKHLW 59 (468)
Q Consensus 19 ~~~~d~~s~LPd~vL~~Ils~L~~~~~~r~s~vskrWr~lw 59 (468)
.-..|.++.||+|++.+||+||+.+++++++.|||+|+++-
T Consensus 9 ~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~ 49 (464)
T 3v7d_B 9 NLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII 49 (464)
T ss_dssp CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred ccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999999999999999999998653
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.54 E-value=1.2e-05 Score=70.25 Aligned_cols=90 Identities=19% Similarity=0.109 Sum_probs=58.2
Q ss_pred eeecCCCccccCccceEEecccccCCCCCC--cccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCC
Q 040527 149 LIELPDNICTCKTLEMLKLKLDFDFKIPTS--RICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHS 225 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~ 225 (468)
...+|..++. +|+.|+|+++.+...++. +..+++|++|+|+ +.+.+. .. ..+.+++.|+.|+|.++... +
T Consensus 20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~-~~~~~l~~L~~L~Ls~N~l~--~ 92 (192)
T 1w8a_A 20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI--EP-NAFEGASHIQELQLGENKIK--E 92 (192)
T ss_dssp CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB--CT-TTTTTCTTCCEEECCSCCCC--E
T ss_pred cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc--CH-hHcCCcccCCEEECCCCcCC--c
Confidence 3456655443 788888888888776443 6688888888888 777642 23 55777888888888888644 2
Q ss_pred eeeEEE-EcCcccEEEEeeee
Q 040527 226 VTNLNI-SSLTLKRLTLSLEK 245 (468)
Q Consensus 226 ~~~~~i-~~~~L~~L~l~~~~ 245 (468)
+..-.+ ..++|+.|.++++.
T Consensus 93 ~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 93 ISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp ECSSSSTTCTTCCEEECCSSC
T ss_pred cCHHHhcCCCCCCEEECCCCc
Confidence 211111 13456666666654
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.51 E-value=1.6e-05 Score=81.59 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=28.6
Q ss_pred ccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeee
Q 040527 156 ICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHL 220 (468)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~ 220 (468)
+..+++|+.|+|++|.+..+|..+.++++|++|+|+ +.+.+ +. -+.+++.|+.|+|.+|.
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~---lp--~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN---VD--GVANLPRLQELLLCNNR 519 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC---CG--GGTTCSSCCEEECCSSC
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC---Cc--ccCCCCCCcEEECCCCC
Confidence 444455555555555554444444455555555555 44432 11 13445555555555554
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.46 E-value=2.8e-05 Score=73.98 Aligned_cols=110 Identities=13% Similarity=0.084 Sum_probs=66.3
Q ss_pred hhHHHHhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhH-HHHHhcCCCCc-eEEEeeeecCCC
Q 040527 311 DRMLQLLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLL-PIILRSLPNLG-AMEIDFLIVGDN 388 (468)
Q Consensus 311 ~~~~~~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l-~~ll~~~p~L~-~L~l~~~~~~~~ 388 (468)
.....+...|++++.+++..+.. ..+....+..+.+|++|++... ...+ ...+.+|++|+ .+++.... ..
T Consensus 216 ~~~~~l~~~~~~L~~l~L~~n~i---~~I~~~aF~~~~~L~~l~l~~n---i~~I~~~aF~~~~~L~~~l~l~~~l--~~ 287 (329)
T 3sb4_A 216 ADFKLIRDYMPNLVSLDISKTNA---TTIPDFTFAQKKYLLKIKLPHN---LKTIGQRVFSNCGRLAGTLELPASV--TA 287 (329)
T ss_dssp HHHHHHHHHCTTCCEEECTTBCC---CEECTTTTTTCTTCCEEECCTT---CCEECTTTTTTCTTCCEEEEECTTC--CE
T ss_pred HHHHHHHHhcCCCeEEECCCCCc---ceecHhhhhCCCCCCEEECCcc---cceehHHHhhCChhccEEEEEcccc--eE
Confidence 34445556689999999998766 5564556778888999988643 2112 23478899999 99987410 00
Q ss_pred CCCCCCCccCcccccceeEEEEEeecCchHHHHHHHHHHhcCcccceEE
Q 040527 389 LRWTEPQCVPNCLLLHVKKIEICGFEGLKHELELVKYLLKNSEVLDKMI 437 (468)
Q Consensus 389 ~~w~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L~~l~ 437 (468)
........| .+|+.|.+.+-.-. .+-...+.++++|+.+.
T Consensus 288 ---I~~~aF~~c--~~L~~l~l~~n~i~----~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 288 ---IEFGAFMGC--DNLRYVLATGDKIT----TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ---ECTTTTTTC--TTEEEEEECSSCCC----EECTTTTCTTCCCCEEE
T ss_pred ---EchhhhhCC--ccCCEEEeCCCccC----ccchhhhcCCcchhhhc
Confidence 001111223 67888887421110 11123577888888875
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.44 E-value=1.9e-05 Score=81.08 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=68.8
Q ss_pred CccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEE-EcCccc
Q 040527 160 KTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNI-SSLTLK 237 (468)
Q Consensus 160 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i-~~~~L~ 237 (468)
..|+.|+|++|.+..+| .+..+++|++|+|+ +.+.. +. ..+.+++.|+.|+|.+|... ++. .+ ..++|+
T Consensus 441 ~~L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~~---lp-~~~~~l~~L~~L~Ls~N~l~--~lp--~l~~l~~L~ 511 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRA---LP-PALAALRCLEVLQASDNALE--NVD--GVANLPRLQ 511 (567)
T ss_dssp TTCSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCC---CC-GGGGGCTTCCEEECCSSCCC--CCG--GGTTCSSCC
T ss_pred cCceEEEecCCCCCCCc-CccccccCcEeecCcccccc---cc-hhhhcCCCCCEEECCCCCCC--CCc--ccCCCCCCc
Confidence 35888999999888874 48889999999999 87762 54 56788999999999998766 443 11 235677
Q ss_pred EEEEeeeeecccCCceeEEEecCCeeEEEEecccc
Q 040527 238 RLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTL 272 (468)
Q Consensus 238 ~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~ 272 (468)
.|.+++|....... .......++|+.|+++++..
T Consensus 512 ~L~Ls~N~l~~~~~-p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 512 ELLLCNNRLQQSAA-IQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp EEECCSSCCCSSST-TGGGGGCTTCCEEECTTSGG
T ss_pred EEECCCCCCCCCCC-cHHHhcCCCCCEEEecCCcC
Confidence 77777765321100 11112356677777766543
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.38 E-value=5.2e-05 Score=66.15 Aligned_cols=83 Identities=16% Similarity=0.099 Sum_probs=65.6
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCCcc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVL 211 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~L 211 (468)
.++++|.+... ....+|..+..+++|+.|+|++|.+...++ .+.++++|++|+|+ +.+.... . ..+.+++.|
T Consensus 31 ~~l~~L~L~~n---~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~--~-~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGN---QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP--P-RTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSS---CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC--T-TTTTTCTTC
T ss_pred CCCCEEECCCC---cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC--H-HHhCCCCCC
Confidence 47888887632 234677777788999999999999988743 47889999999999 8876532 3 568899999
Q ss_pred ceEEEeeeecc
Q 040527 212 EDLLIEIHLED 222 (468)
Q Consensus 212 e~L~L~~c~~~ 222 (468)
+.|+|.+|...
T Consensus 105 ~~L~L~~N~l~ 115 (193)
T 2wfh_A 105 RLLSLHGNDIS 115 (193)
T ss_dssp CEEECCSSCCC
T ss_pred CEEECCCCCCC
Confidence 99999998754
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.38 E-value=3.8e-05 Score=66.93 Aligned_cols=56 Identities=14% Similarity=-0.051 Sum_probs=43.0
Q ss_pred ceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeecc
Q 040527 163 EMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLED 222 (468)
Q Consensus 163 ~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~ 222 (468)
+.++++++.+..+|.. -.++|++|+|+ +.+.... -. .++.+++.|+.|+|.++...
T Consensus 11 ~~l~~s~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~-~~-~~~~~l~~L~~L~Ls~N~l~ 67 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD--IPLHTTELLLNDNELGRIS-SD-GLFGRLPHLVKLELKRNQLT 67 (192)
T ss_dssp TEEECTTSCCSSCCSC--CCTTCSEEECCSCCCCSBC-CS-CSGGGCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCcCcCccC--CCCCCCEEECCCCcCCccC-Cc-cccccCCCCCEEECCCCCCC
Confidence 7899999988877543 24499999999 8876432 22 35889999999999998754
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.37 E-value=3.1e-05 Score=66.41 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=64.8
Q ss_pred eecCCCccccCccceEEecccccCCCCCC-cccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCee
Q 040527 150 IELPDNICTCKTLEMLKLKLDFDFKIPTS-RICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVT 227 (468)
Q Consensus 150 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~ 227 (468)
..+|..+. ++|+.|+++++.+...++. +..+++|++|+|+ +.+... .. ..+.+++.|+.|++.+|... ++.
T Consensus 20 ~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~~~l~~L~~L~l~~N~l~--~~~ 92 (177)
T 2o6r_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL--PD-GVFDKLTKLTILYLHENKLQ--SLP 92 (177)
T ss_dssp SSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC--CT-TTTTTCTTCCEEECCSSCCC--CCC
T ss_pred ccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe--Ch-hHccCCCccCEEECCCCCcc--ccC
Confidence 34554333 5788888888877766443 4677888888888 766532 23 45677888888888887644 221
Q ss_pred eEEE-EcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccc
Q 040527 228 NLNI-SSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDT 271 (468)
Q Consensus 228 ~~~i-~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~ 271 (468)
.-.+ ..++|+.|.++++...... ..+.-..++|++|+++++.
T Consensus 93 ~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 93 NGVFDKLTQLKELALDTNQLKSVP--DGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSC
T ss_pred HHHhhCCcccCEEECcCCcceEeC--HHHhcCCcccCEEEecCCC
Confidence 1111 2346777777666432100 0000124667777766653
No 141
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.29 E-value=0.00013 Score=72.13 Aligned_cols=38 Identities=34% Similarity=0.407 Sum_probs=35.9
Q ss_pred CCccccCCCChHHHHHHhcCCCchhhhhhhhhhhhHHH
Q 040527 20 EKMDRISSLPDEILCHILSFLPIKCAVQTCILSSRWKH 57 (468)
Q Consensus 20 ~~~d~~s~LPd~vL~~Ils~L~~~~~~r~s~vskrWr~ 57 (468)
-..|.++.||+|++.+||+||+.+++++++.|||+|+.
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~ 51 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRI 51 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHH
T ss_pred ccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHh
Confidence 35789999999999999999999999999999999986
No 142
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.27 E-value=6e-05 Score=74.49 Aligned_cols=37 Identities=30% Similarity=0.503 Sum_probs=35.1
Q ss_pred CccccCCCChH----HHHHHhcCCCchhhhhhhhhhhhHHH
Q 040527 21 KMDRISSLPDE----ILCHILSFLPIKCAVQTCILSSRWKH 57 (468)
Q Consensus 21 ~~d~~s~LPd~----vL~~Ils~L~~~~~~r~s~vskrWr~ 57 (468)
..|.++.||+| ++.+||+||+.++++++++|||+|++
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 47899999999 99999999999999999999999994
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.23 E-value=0.00011 Score=63.00 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=74.5
Q ss_pred cCceEEEEEEEecceeeecCCCc-cccCccceEEecccccCCCCCC-cccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNI-CTCKTLEMLKLKLDFDFKIPTS-RICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
.++++|++.. .. ...+|... ..+++|++|+|++|.+...++. +..+++|++|+|+ +.+.+. .. ..+..++.
T Consensus 28 ~~l~~L~l~~--n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~-~~~~~l~~ 101 (177)
T 2o6r_A 28 SSATRLELES--NK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL--PN-GVFDKLTQ 101 (177)
T ss_dssp TTCSEEECCS--SC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CT-TTTTTCTT
T ss_pred CCCcEEEeCC--Cc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc--CH-HHhhCCcc
Confidence 4677888763 21 33555544 5679999999999998877544 5789999999999 877642 33 56788999
Q ss_pred cceEEEeeeeccCCCeeeEEE-EcCcccEEEEeeee
Q 040527 211 LEDLLIEIHLEDKHSVTNLNI-SSLTLKRLTLSLEK 245 (468)
Q Consensus 211 Le~L~L~~c~~~~~~~~~~~i-~~~~L~~L~l~~~~ 245 (468)
|+.|++.+|... ++..-.+ ..++|+.|.+.++.
T Consensus 102 L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 102 LKELALDTNQLK--SVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEEECcCCcce--EeCHHHhcCCcccCEEEecCCC
Confidence 999999998755 3322111 24679999998875
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.20 E-value=5.5e-05 Score=72.83 Aligned_cols=59 Identities=25% Similarity=0.287 Sum_probs=32.2
Q ss_pred ccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhh-ccCCccceEEEee
Q 040527 156 ICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLF-TICPVLEDLLIEI 218 (468)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~-~~cp~Le~L~L~~ 218 (468)
+..+++|+.|.|.++.-...++ ...++|++|.|. +.+.++ .+. .+. ..+|+|+.|+|..
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~-~l~-~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDS-VVE-DILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHH-HHH-HHHHSBCTTCCEEEEEC
T ss_pred HhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChH-HHH-HHHHccCCCCcEEEEec
Confidence 3445677777776653112112 236677777777 655432 244 333 2567777777653
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.18 E-value=0.00019 Score=68.24 Aligned_cols=193 Identities=11% Similarity=0.019 Sum_probs=105.0
Q ss_pred cCccceEEecccccCCCC-CCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeee-------ccC------
Q 040527 159 CKTLEMLKLKLDFDFKIP-TSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHL-------EDK------ 223 (468)
Q Consensus 159 ~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~-------~~~------ 223 (468)
|++|+.|.|.. .+..++ ..+.+|++|++|+|. ..+..- -. ..|.+|..+..+.+.... +..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i--~~-~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNL--LP-EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEE--CT-TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcccc--ch-hhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 78888888887 555442 346788888888887 544321 12 456667766665543310 000
Q ss_pred CCee-eEEE---------------EcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceE---EEecCCCee
Q 040527 224 HSVT-NLNI---------------SSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSY---MVHELHSLT 284 (468)
Q Consensus 224 ~~~~-~~~i---------------~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~ 284 (468)
..++ .+.+ ...++..+.+.+.... .....+.-.+++|+++++.++....+ .+.++++|+
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~--~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN--ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH--HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH--HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 0111 0111 1122333333332100 00000001268999999988644433 467788888
Q ss_pred EEEEeeeeecccccCcCCCCCCCCchhhHHHHhhhcCcee-EEEEecccccccccccccCCCCCCCcceEEEEEecCCch
Q 040527 285 EVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLLKGITNTR-FLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFR 363 (468)
Q Consensus 285 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~-~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~ 363 (468)
.+.+... +...+ ...+.+|++|+ .+.+.. .. ..+....+..+++|+.|++.... ..
T Consensus 254 ~l~l~~n-----i~~I~------------~~aF~~~~~L~~~l~l~~-~l---~~I~~~aF~~c~~L~~l~l~~n~--i~ 310 (329)
T 3sb4_A 254 KIKLPHN-----LKTIG------------QRVFSNCGRLAGTLELPA-SV---TAIEFGAFMGCDNLRYVLATGDK--IT 310 (329)
T ss_dssp EEECCTT-----CCEEC------------TTTTTTCTTCCEEEEECT-TC---CEECTTTTTTCTTEEEEEECSSC--CC
T ss_pred EEECCcc-----cceeh------------HHHhhCChhccEEEEEcc-cc---eEEchhhhhCCccCCEEEeCCCc--cC
Confidence 8876421 11111 13367888898 999877 44 44434466778888888874322 21
Q ss_pred hH-HHHHhcCCCCceEEE
Q 040527 364 LL-PIILRSLPNLGAMEI 380 (468)
Q Consensus 364 ~l-~~ll~~~p~L~~L~l 380 (468)
.+ ...+.+|++|+.++.
T Consensus 311 ~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 311 TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECTTTTCTTCCCCEEEC
T ss_pred ccchhhhcCCcchhhhcc
Confidence 22 235788999998863
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.17 E-value=2.9e-05 Score=82.16 Aligned_cols=109 Identities=17% Similarity=0.004 Sum_probs=52.4
Q ss_pred CCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEE
Q 040527 154 DNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNIS 232 (468)
Q Consensus 154 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~ 232 (468)
..+..+++|+.|+|++|.+..++.....+++|++|+|+ +.+.. +- .-+.+++.|+.|+|.+|... .+....-.
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~---lp-~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~ 291 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTE---LP-AEIKNLSNLRVLDLSHNRLT--SLPAELGS 291 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSC---CC-GGGGGGTTCCEEECTTSCCS--SCCSSGGG
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcc---cC-hhhhCCCCCCEEeCcCCcCC--ccChhhcC
Confidence 33444566666666666665554445566666666666 55541 33 33455666666666666533 22111112
Q ss_pred cCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccc
Q 040527 233 SLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDT 271 (468)
Q Consensus 233 ~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~ 271 (468)
.++|+.|.+++|... .+..-.-..++|+.|+++++.
T Consensus 292 l~~L~~L~L~~N~l~---~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT---TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GTTCSEEECCSSCCC---CCCSSTTSCTTCCCEECTTSC
T ss_pred CCCCCEEECCCCCCC---ccChhhhcCCCccEEeCCCCc
Confidence 345666666665421 111111134566666666543
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.10 E-value=0.00016 Score=61.91 Aligned_cols=69 Identities=17% Similarity=0.026 Sum_probs=46.5
Q ss_pred eeecCCCccccCccceEEecccccCCCC-CCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeecc
Q 040527 149 LIELPDNICTCKTLEMLKLKLDFDFKIP-TSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLED 222 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~ 222 (468)
...+|..+. ++|++|+|+++.+...+ ..+.++++|++|+|+ +.+... -. .++.++++|+.|+|.+|...
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i--~~-~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI--PT-GVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CT-TTTTTCTTCCEEECCSSCCC
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc--Ch-hHhCCcchhhEEECCCCccc
Confidence 345565443 67888888888777663 345678888888888 766542 22 45677788888888877643
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.03 E-value=0.00019 Score=61.05 Aligned_cols=69 Identities=17% Similarity=0.066 Sum_probs=45.4
Q ss_pred eeecCCCccccCccceEEecccccCCCC-CCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeecc
Q 040527 149 LIELPDNICTCKTLEMLKLKLDFDFKIP-TSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLED 222 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~ 222 (468)
...+|..+. ++|+.|+|+++.+...+ ..+.++++|++|+|+ +.+... -. ..|.++++|+.|+|.++...
T Consensus 21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~-~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL--PA-GVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC--CT-TTTTTCTTCCEEECCSSCCC
T ss_pred cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc--Ch-hhccCCCCCCEEECCCCccC
Confidence 344555443 67788888888777663 335677788888887 766532 22 45677778888888777543
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.01 E-value=7.8e-05 Score=78.86 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=78.7
Q ss_pred cCceEEEEEEEecceeeecCCCccccCccceEEecccccCCCCCCcccCCcccEEEEE-EEecCcccchhhhhccCCccc
Q 040527 134 RNVGDIELNHVYVDVLIELPDNICTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLE 212 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le 212 (468)
..++.|++.. . ....+|..++.+++|++|+|++|.+..+|..+..+++|++|+|+ +.+.. +- .-+.+++.|+
T Consensus 224 ~~L~~L~Ls~--n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~---lp-~~~~~l~~L~ 296 (727)
T 4b8c_D 224 QLWHALDLSN--L-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS---LP-AELGSCFQLK 296 (727)
T ss_dssp CCCCEEECTT--S-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS---CC-SSGGGGTTCS
T ss_pred CCCcEEECCC--C-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc---cC-hhhcCCCCCC
Confidence 4666777652 2 24478888889999999999999998777778899999999999 88762 44 5578899999
Q ss_pred eEEEeeeeccCCCeeeEEEEcCcccEEEEeeeee
Q 040527 213 DLLIEIHLEDKHSVTNLNISSLTLKRLTLSLEKV 246 (468)
Q Consensus 213 ~L~L~~c~~~~~~~~~~~i~~~~L~~L~l~~~~~ 246 (468)
.|+|.+|... .+....-..++|+.|.+++|.+
T Consensus 297 ~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 297 YFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp EEECCSSCCC--CCCSSTTSCTTCCCEECTTSCC
T ss_pred EEECCCCCCC--ccChhhhcCCCccEEeCCCCcc
Confidence 9999999754 3322211246799999998864
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.94 E-value=0.0002 Score=68.56 Aligned_cols=92 Identities=17% Similarity=0.153 Sum_probs=65.7
Q ss_pred eeecCCCccccCccceEEecc-cccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCC
Q 040527 149 LIELPDNICTCKTLEMLKLKL-DFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHS 225 (468)
Q Consensus 149 ~~~lp~~~~~~~~L~~L~L~~-~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~ 225 (468)
...+|. +..+++|+.|+|++ +.+...++ .+.++++|+.|+|+ +.+.+. .. ..|.+++.|+.|+|.++... +
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~-~~~~~l~~L~~L~l~~N~l~--~ 94 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV--AP-DAFHFTPRLSRLNLSFNALE--S 94 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE--CT-TGGGSCSCCCEEECCSSCCS--C
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee--CH-HHhcCCcCCCEEeCCCCccc--e
Confidence 456787 77788899999986 88877643 46789999999999 877642 33 56888999999999998755 3
Q ss_pred eeeEEEEcCcccEEEEeeeee
Q 040527 226 VTNLNISSLTLKRLTLSLEKV 246 (468)
Q Consensus 226 ~~~~~i~~~~L~~L~l~~~~~ 246 (468)
+..-.+...+|+.|.+.++.+
T Consensus 95 ~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 95 LSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCSTTTCSCCCCEEECCSSCC
T ss_pred eCHHHcccCCceEEEeeCCCc
Confidence 322112223488888887753
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.91 E-value=0.00076 Score=57.25 Aligned_cols=83 Identities=14% Similarity=0.028 Sum_probs=63.8
Q ss_pred cCceEEEEEEEecceeeec-CCCccccCccceEEecccccCCCCCC-cccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIEL-PDNICTCKTLEMLKLKLDFDFKIPTS-RICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
..++.|++.. . ....+ |..+..+++|++|+|++|.+...++. +..+++|++|+|+ +.+... .. ..+.++++
T Consensus 30 ~~l~~L~L~~--N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~--~~-~~~~~l~~ 103 (170)
T 3g39_A 30 TTTQVLYLYD--N-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI--PR-GAFDNLKS 103 (170)
T ss_dssp TTCSEEECCS--S-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CT-TTTTTCTT
T ss_pred CCCcEEEcCC--C-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe--CH-HHhcCCCC
Confidence 5677777762 2 23445 44556789999999999999887555 4789999999999 888642 23 56889999
Q ss_pred cceEEEeeeecc
Q 040527 211 LEDLLIEIHLED 222 (468)
Q Consensus 211 Le~L~L~~c~~~ 222 (468)
|+.|+|.++.+.
T Consensus 104 L~~L~L~~N~~~ 115 (170)
T 3g39_A 104 LTHIWLLNNPWD 115 (170)
T ss_dssp CCEEECCSSCBC
T ss_pred CCEEEeCCCCCC
Confidence 999999998754
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.91 E-value=0.00077 Score=57.50 Aligned_cols=83 Identities=17% Similarity=0.075 Sum_probs=64.1
Q ss_pred cCceEEEEEEEecceeeec-CCCccccCccceEEecccccCCCCCC-cccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIEL-PDNICTCKTLEMLKLKLDFDFKIPTS-RICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
.+++.|++.. .. ...+ |..+..+++|++|+|++|.+..+|+. +..+++|++|+|+ +.+... .. ..+..+++
T Consensus 33 ~~L~~L~Ls~--N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l--~~-~~~~~l~~ 106 (174)
T 2r9u_A 33 TDKQRLWLNN--NQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI--PR-GAFDNLKS 106 (174)
T ss_dssp TTCSEEECCS--SC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CT-TTTTTCTT
T ss_pred CCCcEEEeCC--CC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee--CH-HHhccccC
Confidence 5778888762 22 3345 44556789999999999999888655 4789999999999 888642 23 56888999
Q ss_pred cceEEEeeeecc
Q 040527 211 LEDLLIEIHLED 222 (468)
Q Consensus 211 Le~L~L~~c~~~ 222 (468)
|+.|+|.++.+.
T Consensus 107 L~~L~L~~N~~~ 118 (174)
T 2r9u_A 107 LTHIYLYNNPWD 118 (174)
T ss_dssp CSEEECCSSCBC
T ss_pred CCEEEeCCCCcc
Confidence 999999998754
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.73 E-value=0.00032 Score=68.54 Aligned_cols=58 Identities=9% Similarity=0.093 Sum_probs=30.4
Q ss_pred hhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhH-HHHHhcCCCCceEEEee
Q 040527 317 LKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLL-PIILRSLPNLGAMEIDF 382 (468)
Q Consensus 317 l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l-~~ll~~~p~L~~L~l~~ 382 (468)
+.+|++|+.+.+... . ..+....+..+.+|+.+.|... ...+ ...+.+| +|+.+++.+
T Consensus 296 F~~c~~L~~l~l~~~-i---~~I~~~aF~~c~~L~~l~lp~~---l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 296 LEGCPKLARFEIPES-I---RILGQGLLGGNRKVTQLTIPAN---VTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp TTTCTTCCEECCCTT-C---CEECTTTTTTCCSCCEEEECTT---CCEECTTSSSSS-CCCEEEECC
T ss_pred hhCCccCCeEEeCCc-e---EEEhhhhhcCCCCccEEEECcc---ccEEcHHhCCCC-CCCEEEEcC
Confidence 455666666666532 2 3333334555666776666321 1111 1235566 777777765
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.31 E-value=0.00062 Score=65.84 Aligned_cols=140 Identities=14% Similarity=0.060 Sum_probs=77.8
Q ss_pred CCccceEEEeeeeccCCCeeeEE----EEcCcccEEEEeeeeecccCCceeEEEecCCeeEEEEeccccceEEEecCCCe
Q 040527 208 CPVLEDLLIEIHLEDKHSVTNLN----ISSLTLKRLTLSLEKVLFSNTKHQVMIRAPNLEHLCIYDDTLVSYMVHELHSL 283 (468)
Q Consensus 208 cp~Le~L~L~~c~~~~~~~~~~~----i~~~~L~~L~l~~~~~~~~~~~~~i~~~~p~L~~L~l~~~~~~~~~~~~~~~L 283 (468)
.+.|+.|+|.+|..+..+...+. ...++|+.|++++|.... .....+.-..++|++|+++++....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~L~~L~Ls~n~l~~--------- 140 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP-AGLRTLLPVFLRARKLGLQLNSLGP--------- 140 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH-HHHHHTHHHHHTEEEEECCSSCCCH---------
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH-HHHHHHHHHHHhccHhhcCCCCCCH---------
Confidence 56789999999874410111111 012467777777775311 0011111122456666666653210
Q ss_pred eEEEEeeeeecccccCcCCCCCCCCchhhHHHHh-hhcCceeEEEEecccccccc--cccccCCCCCCCcceEEEEEecC
Q 040527 284 TEVHFDIEFDKYFVEDLQEFDPPNIPADRMLQLL-KGITNTRFLSLSAGIISALD--CAFEDYIPTFPYLTYLKVEIEES 360 (468)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l-~~~~~l~~L~l~~~~~~~~~--~l~~~~~~~~~~L~~L~l~~~~~ 360 (468)
. ....+...+ ...++|+.|+++.+.+.+.. .+ ...+...++|++|+|+.+..
T Consensus 141 ----------------~--------~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l-~~~L~~~~~L~~L~Ls~N~l 195 (372)
T 3un9_A 141 ----------------E--------ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL-MEGLAGNTSVTHLSLLHTGL 195 (372)
T ss_dssp ----------------H--------HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHH-HHHHHTCSSCCEEECTTSSC
T ss_pred ----------------H--------HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHH-HHHHhcCCCcCEEeCCCCCC
Confidence 0 012333334 34678999999998772211 11 11234677899999987655
Q ss_pred Cc---hhHHHHHhcCCCCceEEEee
Q 040527 361 GF---RLLPIILRSLPNLGAMEIDF 382 (468)
Q Consensus 361 ~~---~~l~~ll~~~p~L~~L~l~~ 382 (468)
.. ..+...+..+++|+.|+|++
T Consensus 196 ~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 196 GDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred CcHHHHHHHHHHhcCCCcCeEECCC
Confidence 33 44566778888999999986
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.98 E-value=0.0011 Score=64.68 Aligned_cols=190 Identities=9% Similarity=0.087 Sum_probs=96.0
Q ss_pred ccccCccceEEecccccCCCC-CCcccCCcccEEEEE--EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEEE
Q 040527 156 ICTCKTLEMLKLKLDFDFKIP-TSRICFPSLKCLHAE--MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNIS 232 (468)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~--~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i~ 232 (468)
.|...+|+.+.|... +..++ ..+.+ .+|+++.|. +...+ . ..|.+|++|+.+.+..+... .+..-...
T Consensus 131 aF~~~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~l~~I~----~-~aF~~c~~L~~l~l~~n~l~--~I~~~aF~ 201 (401)
T 4fdw_A 131 AFRNSQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPSTLEQLK----E-DIFYYCYNLKKADLSKTKIT--KLPASTFV 201 (401)
T ss_dssp TTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEECCTTCCEEC----S-STTTTCTTCCEEECTTSCCS--EECTTTTT
T ss_pred hcccCCccEEEeCCC-ccEECHHhcCC-CCceEEEeCCCccEeh----H-HHhhCcccCCeeecCCCcce--EechhhEe
Confidence 343347888888765 33222 22334 368888775 32221 1 45778999999988765432 11111112
Q ss_pred cCcccEEEEeeeeecccCCceeEE----EecCCeeEEEEeccc--cceEEEecCCCeeEEEEeeeeecccccCcCCCCCC
Q 040527 233 SLTLKRLTLSLEKVLFSNTKHQVM----IRAPNLEHLCIYDDT--LVSYMVHELHSLTEVHFDIEFDKYFVEDLQEFDPP 306 (468)
Q Consensus 233 ~~~L~~L~l~~~~~~~~~~~~~i~----~~~p~L~~L~l~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~ 306 (468)
+.+|+.+.+... ...+. ..+++|+.+.+...- .....+.+ .+|+.+.+... +...+
T Consensus 202 ~~~L~~l~lp~~-------l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~-----i~~I~----- 263 (401)
T 4fdw_A 202 YAGIEEVLLPVT-------LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG-----VTNIA----- 263 (401)
T ss_dssp TCCCSEEECCTT-------CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT-----CCEEC-----
T ss_pred ecccCEEEeCCc-------hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC-----ccEEC-----
Confidence 456776666532 11211 134667777665421 01111222 34555544210 00000
Q ss_pred CCchhhHHHHhhhcCceeEEEEeccccc--ccccccccCCCCCCCcceEEEEEecCCchhH-HHHHhcCCCCceEEEee
Q 040527 307 NIPADRMLQLLKGITNTRFLSLSAGIIS--ALDCAFEDYIPTFPYLTYLKVEIEESGFRLL-PIILRSLPNLGAMEIDF 382 (468)
Q Consensus 307 ~~~~~~~~~~l~~~~~l~~L~l~~~~~~--~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l-~~ll~~~p~L~~L~l~~ 382 (468)
...+..|++|+.+.+..+... ....+....+..+++|+.+.|... ...+ ...+.+|++|+.+.|..
T Consensus 264 -------~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~---i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 264 -------SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES---IRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp -------TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCCSCCEEEECT
T ss_pred -------hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc---eEEEhhhhhcCCCCccEEEECc
Confidence 123567788888888766541 001232335567777777777521 1111 23467788888888853
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.29 E-value=0.00032 Score=60.63 Aligned_cols=58 Identities=16% Similarity=0.062 Sum_probs=25.0
Q ss_pred ccCccceEEecccccCCCC-----CCcccCCcccEEEEE-EEecCcc--cchhhhhccCCccceEEE
Q 040527 158 TCKTLEMLKLKLDFDFKIP-----TSRICFPSLKCLHAE-MYYPHST--CITEKLFTICPVLEDLLI 216 (468)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~-----~~~~~~~~L~~L~L~-~~~~~~~--~l~~~l~~~cp~Le~L~L 216 (468)
.+++|++|+|++|.+.+.. ......++|++|+|+ +.+.+.+ .+. ..+..++.|++|+|
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~-~~L~~n~~L~~L~L 128 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV-EALQSNTSLIELRI 128 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH-HGGGGCSSCCEEEC
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH-HHHHhCCCceEEEe
Confidence 3455555555555543310 001123455555555 5444322 122 33334445555555
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.63 E-value=0.017 Score=54.78 Aligned_cols=83 Identities=13% Similarity=0.018 Sum_probs=60.8
Q ss_pred cCceEEEEEEEecceeeecCC-CccccCccceEEecccccCCCCC-CcccCCcccEEEEE-EEecCcccchhhhhccCCc
Q 040527 134 RNVGDIELNHVYVDVLIELPD-NICTCKTLEMLKLKLDFDFKIPT-SRICFPSLKCLHAE-MYYPHSTCITEKLFTICPV 210 (468)
Q Consensus 134 ~~l~~L~l~~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~ 210 (468)
.++++|++.. .+....+|. .+..+++|+.|+|++|.+...++ .+.++++|+.|+|+ +.+... -. .++...+
T Consensus 31 ~~L~~L~l~~--~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~-~~~~~~~- 104 (347)
T 2ifg_A 31 ENLTELYIEN--QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL--SW-KTVQGLS- 104 (347)
T ss_dssp SCCSEEECCS--CSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC--CS-TTTCSCC-
T ss_pred CCeeEEEccC--CCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee--CH-HHcccCC-
Confidence 3677888752 122445554 45678999999999999988755 46889999999999 888643 23 4566565
Q ss_pred cceEEEeeeecc
Q 040527 211 LEDLLIEIHLED 222 (468)
Q Consensus 211 Le~L~L~~c~~~ 222 (468)
|+.|.|.++.+.
T Consensus 105 L~~l~l~~N~~~ 116 (347)
T 2ifg_A 105 LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCC
T ss_pred ceEEEeeCCCcc
Confidence 999999998744
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.07 E-value=0.018 Score=49.42 Aligned_cols=125 Identities=14% Similarity=0.163 Sum_probs=80.1
Q ss_pred hhhHHHHhhhcCceeEEEEecc-cccc--cccccccCCCCCCCcceEEEEEecCCc---hhHHHHHhcCCCCceEEEeee
Q 040527 310 ADRMLQLLKGITNTRFLSLSAG-IISA--LDCAFEDYIPTFPYLTYLKVEIEESGF---RLLPIILRSLPNLGAMEIDFL 383 (468)
Q Consensus 310 ~~~~~~~l~~~~~l~~L~l~~~-~~~~--~~~l~~~~~~~~~~L~~L~l~~~~~~~---~~l~~ll~~~p~L~~L~l~~~ 383 (468)
...+...+...++++.|+++.+ .+++ ...+ ...+...++|++|+|+.+.... ..+...+...++|+.|+|..+
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l-~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH-HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4567788889999999999988 6632 1111 1234567889999998876543 456677888899999999872
Q ss_pred -ecCCCCCCCCCCccCcc--cccceeEEEE--Eeec-CchHHHHHHHHHHhcCcccceEEEEec
Q 040527 384 -IVGDNLRWTEPQCVPNC--LLLHVKKIEI--CGFE-GLKHELELVKYLLKNSEVLDKMIIRSM 441 (468)
Q Consensus 384 -~~~~~~~w~~~~~~~~~--~~~~L~~v~i--~~~~-g~~~e~~~~~~ll~~a~~L~~l~i~~~ 441 (468)
..+... . .+.+. ...+|+++.+ .+.. |.+....+++ .++..+.|+++.+...
T Consensus 104 ~i~~~g~--~---~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 104 FISGSGI--L---ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CCCHHHH--H---HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCS
T ss_pred cCCHHHH--H---HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCC
Confidence 211110 0 01111 1257999999 4332 4444444554 4566688999998764
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.69 E-value=0.012 Score=57.15 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=39.0
Q ss_pred HhhhcCceeEEEEecccccccccccccCCCCCCCcceEEEEEecCCchhH-HHHHhcCCCCceEEEee
Q 040527 316 LLKGITNTRFLSLSAGIISALDCAFEDYIPTFPYLTYLKVEIEESGFRLL-PIILRSLPNLGAMEIDF 382 (468)
Q Consensus 316 ~l~~~~~l~~L~l~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~l-~~ll~~~p~L~~L~l~~ 382 (468)
.+.+|.+|+.+++... . +.+....+..+.+|+++.+... ...+ ...+.+|++|+++++..
T Consensus 315 aF~~c~~L~~i~lp~~-v---~~I~~~aF~~c~~L~~i~lp~~---l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-V---EEIGKRSFRGCTSLSNINFPLS---LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTCTTCCEECCCTT-C---CEECTTTTTTCTTCCEECCCTT---CCEECTTTBTTCTTCCEEEEEG
T ss_pred hhcCCCCCCEEEeCCc-c---cEEhHHhccCCCCCCEEEECcc---ccEehHHHhhCCCCCCEEEECC
Confidence 3567888888887533 2 4443445667788888877422 1111 23478999999999865
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.17 E-value=0.0097 Score=54.24 Aligned_cols=21 Identities=0% Similarity=0.023 Sum_probs=11.9
Q ss_pred HHHHHHHHhhCCCCce-eEEee
Q 040527 90 ANFVNKVLLFHSADIN-KFSVH 110 (468)
Q Consensus 90 ~~~v~~~l~~~~~~~~-~~~l~ 110 (468)
.+.+..++..|..+.. .+.++
T Consensus 114 ~~~Lk~~l~~ryn~~~~~LdLs 135 (267)
T 3rw6_A 114 VEQLKLIMSKRYDGSQQALDLK 135 (267)
T ss_dssp HHHHHHHHHHTEETTTTEEECT
T ss_pred HHHHHHHHHhccchhccccCHH
Confidence 3556667776654433 55554
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.47 E-value=0.032 Score=50.77 Aligned_cols=62 Identities=21% Similarity=0.175 Sum_probs=32.1
Q ss_pred cCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEE-EEcCcccEEEEeeee
Q 040527 181 CFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLN-ISSLTLKRLTLSLEK 245 (468)
Q Consensus 181 ~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~-i~~~~L~~L~l~~~~ 245 (468)
++++|++|+|+ +.+.+-..+. .++..+|+|+.|+|.++... ++..+. ....+|+.|.+.++.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~--~~~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELK--SERELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCC--SGGGGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccC--CchhhhhcccCCcceEEccCCc
Confidence 45666666666 5555433344 55556666666666666544 322111 001156666666654
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=83.03 E-value=0.37 Score=46.46 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=25.1
Q ss_pred ccCccceEEecccccCCCCCCcccCCcccEEEEE--EEecCcccchhhhhccCCccceEEEe
Q 040527 158 TCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE--MYYPHSTCITEKLFTICPVLEDLLIE 217 (468)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~--~~~~~~~~l~~~l~~~cp~Le~L~L~ 217 (468)
.|.+|+.+.+......-....+.++++|+++.+. +...+ . ..|.+|+.|+.+.|.
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~----~-~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELP----E-SVFAGCISLKSIDIP 319 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEEC----T-TTTTTCTTCCEEECC
T ss_pred ecccccEEecccccceecCcccccccccccccCCCcccccC----c-eeecCCCCcCEEEeC
Confidence 3555666555433211101234455566666554 21111 1 345566666666554
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=75.37 E-value=0.93 Score=43.55 Aligned_cols=110 Identities=12% Similarity=0.135 Sum_probs=66.3
Q ss_pred cccCccceEEecccccCCCCCCcccCCcccEEEEE--EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEE---
Q 040527 157 CTCKTLEMLKLKLDFDFKIPTSRICFPSLKCLHAE--MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNI--- 231 (468)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~--~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i--- 231 (468)
..|.+++.+......+.. ..+.++.+|+++.+. +...+ . ..|.+|..|+.+.|.. .++.+.-
T Consensus 273 ~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~i~~I~----~-~aF~~c~~L~~i~lp~------~v~~I~~~aF 339 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDSVKFIG----E-EAFESCTSLVSIDLPY------LVEEIGKRSF 339 (394)
T ss_dssp TTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTTCCEEC----T-TTTTTCTTCCEECCCT------TCCEECTTTT
T ss_pred ccccccceeccCceeecc--ccccccccccccccccccceec----h-hhhcCCCCCCEEEeCC------cccEEhHHhc
Confidence 456778877777665544 446678888888886 33222 1 4577888888888754 2233321
Q ss_pred -EcCcccEEEEeeeeecccCCceeEE----EecCCeeEEEEeccc-cceEEEecCCCeeEE
Q 040527 232 -SSLTLKRLTLSLEKVLFSNTKHQVM----IRAPNLEHLCIYDDT-LVSYMVHELHSLTEV 286 (468)
Q Consensus 232 -~~~~L~~L~l~~~~~~~~~~~~~i~----~~~p~L~~L~l~~~~-~~~~~~~~~~~L~~~ 286 (468)
.|.+|+.+.+... +..+. ..+++|+++.+...- .....+.++++|+.+
T Consensus 340 ~~c~~L~~i~lp~~-------l~~I~~~aF~~C~~L~~i~lp~~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 340 RGCTSLSNINFPLS-------LRKIGANAFQGCINLKKVELPKRLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCTTCCEECCCTT-------CCEECTTTBTTCTTCCEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred cCCCCCCEEEECcc-------ccEehHHHhhCCCCCCEEEECCCCEEhhheecCCCCCcEE
Confidence 2466777766442 12221 246888888887641 113456777777754
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=70.84 E-value=1.9 Score=36.90 Aligned_cols=126 Identities=11% Similarity=0.106 Sum_probs=82.4
Q ss_pred hhhHHHHhhhcCceeEEEEecc-cccc--cccccccCCCCCCCcceEEEEEecCC---chhHHHHHhcCCCCceEEEee-
Q 040527 310 ADRMLQLLKGITNTRFLSLSAG-IISA--LDCAFEDYIPTFPYLTYLKVEIEESG---FRLLPIILRSLPNLGAMEIDF- 382 (468)
Q Consensus 310 ~~~~~~~l~~~~~l~~L~l~~~-~~~~--~~~l~~~~~~~~~~L~~L~l~~~~~~---~~~l~~ll~~~p~L~~L~l~~- 382 (468)
...+..++..-+.|+.|+++.+ .+++ .+.+ ...+..-..|+.|+|+.+... ...+...|+.-..|++|+|+.
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~l-a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHH-HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 4567778888889999999874 5421 1111 123345567999999877653 367788888889999999987
Q ss_pred eecCCCCCCCCCCccCcc--cccceeEEEEEe----ecCchHHHHHHHHHHhcCcccceEEEEecc
Q 040527 383 LIVGDNLRWTEPQCVPNC--LLLHVKKIEICG----FEGLKHELELVKYLLKNSEVLDKMIIRSMK 442 (468)
Q Consensus 383 ~~~~~~~~w~~~~~~~~~--~~~~L~~v~i~~----~~g~~~e~~~~~~ll~~a~~L~~l~i~~~~ 442 (468)
.+.+... ..+.+. ....|+++.+.+ .-|...+.++++.+-.| +.|.++.+.+..
T Consensus 109 ~Ig~~Ga-----~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~~ 168 (197)
T 1pgv_A 109 FLTPELL-----ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFAS 168 (197)
T ss_dssp BCCHHHH-----HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCC
T ss_pred cCCHHHH-----HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCCC
Confidence 2222110 000111 124689999864 34777788888887666 569988887643
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=67.76 E-value=0.22 Score=42.90 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=10.2
Q ss_pred hhhccCCccceEEEeeeec
Q 040527 203 KLFTICPVLEDLLIEIHLE 221 (468)
Q Consensus 203 ~l~~~cp~Le~L~L~~c~~ 221 (468)
..+..-..|++|+|.+|.+
T Consensus 92 ~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 92 ELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHCSSCCEEECCSSBC
T ss_pred HHHhcCCccCeEecCCCcC
Confidence 4444455566666666553
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=67.63 E-value=3.2 Score=39.67 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=39.8
Q ss_pred ccccCccceEEecccccCCC-CCCcccCCcccEEEEE--EEecCcccchhhhhccCCccceEEEee
Q 040527 156 ICTCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE--MYYPHSTCITEKLFTICPVLEDLLIEI 218 (468)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~--~~~~~~~~l~~~l~~~cp~Le~L~L~~ 218 (468)
+..|.+|+.+.+... +..+ ...+.+|.+|+++.|. +...+ . ..|.+|.+|+++.|..
T Consensus 284 F~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~----~-~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 284 FMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEGITQIL----D-DAFAGCEQLERIAIPS 343 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEEC----T-TTTTTCTTCCEEEECT
T ss_pred cccccccccccCCCc-ccccCceeecCCCCcCEEEeCCcccEeh----H-hHhhCCCCCCEEEECc
Confidence 346899999998643 2222 2446789999999996 33222 2 5588999999999864
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=63.28 E-value=4.3 Score=31.99 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=18.0
Q ss_pred ccceEEecccccCCCCCC-cccCCcccEEEEE-EEec
Q 040527 161 TLEMLKLKLDFDFKIPTS-RICFPSLKCLHAE-MYYP 195 (468)
Q Consensus 161 ~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~-~~~~ 195 (468)
+|+.|+|++|.+..+++. +..+++|++|+|. +.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 456666666655554322 3345555555555 4443
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=57.88 E-value=5.1 Score=37.91 Aligned_cols=76 Identities=11% Similarity=0.209 Sum_probs=45.6
Q ss_pred cccCccceEEecccccCCC-CCCcccCCcccEEEEE-EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEE---
Q 040527 157 CTCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNI--- 231 (468)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i--- 231 (468)
..|.+|+.+.+.... ... ...+.+|++|+++.+. ..+.. +....|.+|+.|+.+.|.. +++.+.-
T Consensus 260 ~~~~~l~~i~l~~~i-~~i~~~aF~~c~~L~~i~l~~~~i~~---I~~~aF~~c~~L~~i~lp~------~l~~I~~~aF 329 (379)
T 4h09_A 260 QNCTALKTLNFYAKV-KTVPYLLCSGCSNLTKVVMDNSAIET---LEPRVFMDCVKLSSVTLPT------ALKTIQVYAF 329 (379)
T ss_dssp TTCTTCCEEEECCCC-SEECTTTTTTCTTCCEEEECCTTCCE---ECTTTTTTCTTCCEEECCT------TCCEECTTTT
T ss_pred ceeehhccccccccc-eeccccccccccccccccccccccce---ehhhhhcCCCCCCEEEcCc------cccEEHHHHh
Confidence 347888888886542 222 1346678888888885 33321 2115578888888888854 2333321
Q ss_pred -EcCcccEEEEe
Q 040527 232 -SSLTLKRLTLS 242 (468)
Q Consensus 232 -~~~~L~~L~l~ 242 (468)
.|.+|+.+.+-
T Consensus 330 ~~C~~L~~i~ip 341 (379)
T 4h09_A 330 KNCKALSTISYP 341 (379)
T ss_dssp TTCTTCCCCCCC
T ss_pred hCCCCCCEEEEC
Confidence 24667777664
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=47.87 E-value=12 Score=29.25 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=39.2
Q ss_pred ceEEecccccC--CCCCCcccCC-cccEEEEE-EEecCcccchhhhhccCCccceEEEeeeecc
Q 040527 163 EMLKLKLDFDF--KIPTSRICFP-SLKCLHAE-MYYPHSTCITEKLFTICPVLEDLLIEIHLED 222 (468)
Q Consensus 163 ~~L~L~~~~~~--~~~~~~~~~~-~L~~L~L~-~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~ 222 (468)
..++.++..+. .+|. ++| +|++|+|+ +.+..-. . .+|...+.|+.|.|.++.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~---~lp~~l~~L~Ls~N~l~~l~--~-~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPT---AFPVDTTELVLTGNNLTALP--P-GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCS---CCCTTCSEEECTTSCCSSCC--T-TTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCC---CCCcCCCEEECCCCcCCccC--h-hhhhhccccCEEEecCCCee
Confidence 35666666666 5432 344 79999999 8886532 3 67889999999999998743
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=40.36 E-value=17 Score=34.09 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=52.0
Q ss_pred CccccCccceEEecccccCCC-CCCcccCCcccEEEEE--EEecCcccchhhhhccCCccceEEEeeeeccCCCeeeEEE
Q 040527 155 NICTCKTLEMLKLKLDFDFKI-PTSRICFPSLKCLHAE--MYYPHSTCITEKLFTICPVLEDLLIEIHLEDKHSVTNLNI 231 (468)
Q Consensus 155 ~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~--~~~~~~~~l~~~l~~~cp~Le~L~L~~c~~~~~~~~~~~i 231 (468)
.++.|.+|+.+.+... +..+ ...+.++.+|+.+.+. +...+ . ..|.+|+.|+.+.+..+.. +.+.-
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~----~-~aF~~c~~L~~i~l~~~~i-----~~I~~ 303 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVP----Y-LLCSGCSNLTKVVMDNSAI-----ETLEP 303 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEEC----T-TTTTTCTTCCEEEECCTTC-----CEECT
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhccccccccceecc----c-ccccccccccccccccccc-----ceehh
Confidence 3456899999999765 2222 2446688999999997 22211 2 5688999999999987532 22221
Q ss_pred ----EcCcccEEEEee
Q 040527 232 ----SSLTLKRLTLSL 243 (468)
Q Consensus 232 ----~~~~L~~L~l~~ 243 (468)
.|.+|+.+.+-.
T Consensus 304 ~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 304 RVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTTTTCTTCCEEECCT
T ss_pred hhhcCCCCCCEEEcCc
Confidence 357898888754
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.47 E-value=36 Score=25.17 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=22.3
Q ss_pred cccCCcccEEEEE--EEecCcccchhhhhccCCccceEEEeee
Q 040527 179 RICFPSLKCLHAE--MYYPHSTCITEKLFTICPVLEDLLIEIH 219 (468)
Q Consensus 179 ~~~~~~L~~L~L~--~~~~~~~~l~~~l~~~cp~Le~L~L~~c 219 (468)
+.+|.+|+++.|- +...++ ..|.+|.+|+.+.+..-
T Consensus 16 F~~c~~L~~i~iP~~v~~Ig~-----~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 16 FAGNTVIREITVQPNIGLLYD-----GMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTCTTCCCEEECTTSSCCCT-----TSSTTCTTCCCEEECCS
T ss_pred hcCCCCCcEEEcCCchheEcH-----HHHhccCCccEEEEcCC
Confidence 4566777777765 332221 44777888888777664
Done!