Query 040528
Match_columns 86
No_of_seqs 58 out of 60
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 14:54:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2khf_A PLNJ; anti-microbial, b 18.2 12 0.0004 19.9 -1.4 13 74-86 3-15 (26)
2 2ebo_A Ebola virus envelope gl 17.8 27 0.00092 22.3 0.0 9 61-69 47-55 (74)
3 2knp_A Mcocc-1; disulfide-rich 16.7 30 0.001 19.1 0.0 13 70-82 16-28 (33)
4 1ebo_A Ebola virus envelope pr 14.1 38 0.0013 23.6 0.0 9 61-69 84-92 (131)
5 3s88_J GP2, GP2, envelope glyc 14.0 62 0.0021 23.5 1.1 18 52-69 118-139 (167)
6 3l32_A Phosphoprotein; antipar 13.5 68 0.0023 18.9 1.0 21 22-42 14-34 (45)
7 1az6_A CBD, cellobiohydrolase 8.7 1.3E+02 0.0046 15.0 1.1 16 58-73 10-25 (36)
8 4f7g_B Talin-1; alpha-helix bu 8.6 1E+02 0.0035 22.7 0.7 37 21-57 10-50 (216)
9 3mtv_A NSP1B, papain-like cyst 7.9 1.6E+02 0.0053 22.0 1.4 12 70-81 87-98 (203)
10 2c5z_A SET domain protein 2; S 7.7 1E+02 0.0035 20.8 0.4 19 42-60 41-59 (104)
No 1
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=18.20 E-value=12 Score=19.86 Aligned_cols=13 Identities=38% Similarity=0.238 Sum_probs=9.5
Q ss_pred chhhhhccccCCC
Q 040528 74 SPLSDSRLKKGTY 86 (86)
Q Consensus 74 WP~Mf~sl~~~~~ 86 (86)
|-+...||.||-|
T Consensus 3 wknfwsslrkgfy 15 (26)
T 2khf_A 3 WKNFWSSLRKGFY 15 (26)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcc
Confidence 6777778887755
No 2
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=17.77 E-value=27 Score=22.34 Aligned_cols=9 Identities=44% Similarity=1.014 Sum_probs=8.0
Q ss_pred ccCcccccC
Q 040528 61 DIGPDCCRT 69 (86)
Q Consensus 61 ~iGp~CC~A 69 (86)
.+||+||-.
T Consensus 47 ilgpdc~i~ 55 (74)
T 2ebo_A 47 ILGPDCAIE 55 (74)
T ss_dssp HHGGGGGCC
T ss_pred ecCCccccC
Confidence 699999976
No 3
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=16.72 E-value=30 Score=19.11 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=9.8
Q ss_pred CCCCchhhhhccc
Q 040528 70 GLQCSPLSDSRLK 82 (86)
Q Consensus 70 ~~~CWP~Mf~sl~ 82 (86)
+-+|||..-|-++
T Consensus 16 gcrcwptvtpgvg 28 (33)
T 2knp_A 16 GCRCWPTVTPGVG 28 (33)
T ss_dssp SCCEEECSSTTEE
T ss_pred ceeeccccCCCee
Confidence 5689998887654
No 4
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=14.13 E-value=38 Score=23.64 Aligned_cols=9 Identities=44% Similarity=0.914 Sum_probs=7.9
Q ss_pred ccCcccccC
Q 040528 61 DIGPDCCRT 69 (86)
Q Consensus 61 ~iGp~CC~A 69 (86)
-+||+||--
T Consensus 84 iLGPdCcIe 92 (131)
T 1ebo_A 84 ILGPDCRIE 92 (131)
T ss_dssp HHGGGGGCC
T ss_pred ecCCccccC
Confidence 699999976
No 5
>3s88_J GP2, GP2, envelope glycoprotein; glycosylation, viral membrane, immune system-viral protein C; HET: NAG; 3.35A {Sudan ebolavirus} PDB: 3ve0_J* 3csy_J* 2lcy_A 2lcz_A
Probab=14.02 E-value=62 Score=23.49 Aligned_cols=18 Identities=33% Similarity=0.877 Sum_probs=12.1
Q ss_pred HHHHHhccc----ccCcccccC
Q 040528 52 VIFFINSQA----DIGPDCCRT 69 (86)
Q Consensus 52 v~fflnGe~----~iGp~CC~A 69 (86)
+-|+|.-+. .|||.||--
T Consensus 118 IDFLL~rwGgtC~~lgp~CCi~ 139 (167)
T 3s88_J 118 IDFLLRRWGGTCRILGPDCCIE 139 (167)
T ss_dssp HHHHHHHHSSCCCSSCCSSCCC
T ss_pred HHHHHHHhCCCceeCCCccccc
Confidence 445554333 799999976
No 6
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=13.45 E-value=68 Score=18.86 Aligned_cols=21 Identities=5% Similarity=0.300 Sum_probs=17.3
Q ss_pred CchhhhhhccCcchhhhhhhh
Q 040528 22 YNLATRLEVSGGQMECWNVLM 42 (86)
Q Consensus 22 ~~L~~rL~~~~~~~~CW~sL~ 42 (86)
.-+..|++.|++..+=||.+.
T Consensus 14 ~qiVrkmKtGe~FfKiWS~~~ 34 (45)
T 3l32_A 14 VQIVRQMRSGERFLKIWSQTV 34 (45)
T ss_dssp HHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHHH
Confidence 346778899999999999874
No 7
>1az6_A CBD, cellobiohydrolase I; cellulase, nuclear magnetic resonance spectroscopy, protein- carbohydrate interaction; NMR {Hypocrea jecorina} SCOP: g.3.8.1 PDB: 1azh_A 1cbh_A 2cbh_A 1azk_A 1azj_A
Probab=8.75 E-value=1.3e+02 Score=14.97 Aligned_cols=16 Identities=31% Similarity=0.787 Sum_probs=11.1
Q ss_pred cccccCcccccCCCCC
Q 040528 58 SQADIGPDCCRTGLQC 73 (86)
Q Consensus 58 Ge~~iGp~CC~A~~~C 73 (86)
|..+-||.+|.+...|
T Consensus 10 G~g~~G~t~c~~g~~c 25 (36)
T 1az6_A 10 GIGYSGPTVCASGTTC 25 (36)
T ss_dssp CTTCSSCCCCCSSSCE
T ss_pred cCCccCCCccCCCCee
Confidence 4557789999875444
No 8
>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A
Probab=8.56 E-value=1e+02 Score=22.72 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=23.1
Q ss_pred CCchhhhh---h-ccCcchhhhhhhhcccchHHHHHHHHHh
Q 040528 21 GYNLATRL---E-VSGGQMECWNVLMELKSCSNEIVIFFIN 57 (86)
Q Consensus 21 ~~~L~~rL---~-~~~~~~~CW~sL~~l~sCt~EIv~ffln 57 (86)
++.|+..+ + .-+|+.+|=.++-+|+.|+.||=...+.
T Consensus 10 ~~~~~~lisaird~APGQ~eCd~AI~~in~~i~dLd~AsLa 50 (216)
T 4f7g_B 10 GVDLGTENLYFQSKAPGQLECETAIAALNSCLRDLDQASLA 50 (216)
T ss_dssp --------------CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554443 3 4779999999999999999998655544
No 9
>3mtv_A NSP1B, papain-like cysteine protease; PRRSV, nuclease, hydrol; 2.80A {Porcine reproductive and respiratory svirus}
Probab=7.85 E-value=1.6e+02 Score=22.02 Aligned_cols=12 Identities=17% Similarity=-0.144 Sum_probs=10.4
Q ss_pred CCCCchhhhhcc
Q 040528 70 GLQCSPLSDSRL 81 (86)
Q Consensus 70 ~~~CWP~Mf~sl 81 (86)
+.+||-++|+.+
T Consensus 87 ~G~CW~~lF~~~ 98 (203)
T 3mtv_A 87 EGNCWWRLLDSL 98 (203)
T ss_dssp CSCTTGGGGCSS
T ss_pred CCccHHHHhCCC
Confidence 689999999876
No 10
>2c5z_A SET domain protein 2; SRI domain, RNA polymerase II, transcription, CTD, SET2 histone methyltransferase; NMR {Saccharomyces cerevisiae}
Probab=7.67 E-value=1e+02 Score=20.81 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=16.0
Q ss_pred hcccchHHHHHHHHHhccc
Q 040528 42 MELKSCSNEIVIFFINSQA 60 (86)
Q Consensus 42 ~~l~sCt~EIv~fflnGe~ 60 (86)
-++++|.-|||.-+...|.
T Consensus 41 DniK~CArdiVk~L~~KEl 59 (104)
T 2c5z_A 41 ENIKQCAKDIVKILTTKEL 59 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578999999999888776
Done!