Query 040528
Match_columns 86
No_of_seqs 58 out of 60
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 14:54:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040528.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040528hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cbha_ g.3.8.1 (A:) Cellobioh 19.5 19 0.0014 18.8 1.0 16 58-73 10-25 (36)
2 d1ansa_ g.11.1.1 (A:) Neurotox 12.0 39 0.0029 16.6 1.0 12 65-76 2-20 (27)
3 d1k8rb_ d.15.1.5 (B:) Protein 8.5 75 0.0055 19.4 1.6 17 41-57 14-30 (95)
4 d1n1ua_ g.3.3.1 (A:) Kalata B1 8.1 61 0.0044 16.2 0.8 18 58-75 2-20 (29)
5 d2crda_ g.3.7.2 (A:) Charybdot 8.0 20 0.0015 19.0 -1.2 10 67-76 7-16 (37)
6 d1b6ga_ c.69.1.8 (A:) Haloalka 7.9 88 0.0064 18.8 1.7 15 45-59 296-310 (310)
7 d2ad6b1 a.137.2.1 (B:1-69) Met 7.0 64 0.0047 18.9 0.7 9 67-75 6-14 (69)
8 d1w6sb_ a.137.2.1 (B:) Methano 6.7 67 0.0049 19.0 0.7 9 67-75 6-14 (73)
9 d1d2zb_ a.77.1.2 (B:) Tube dea 6.3 36 0.0026 22.6 -0.9 34 4-44 5-38 (150)
10 d1jmkc_ c.69.1.22 (C:) Surfact 6.3 1.3E+02 0.0092 17.1 1.8 13 48-60 218-230 (230)
No 1
>d1cbha_ g.3.8.1 (A:) Cellobiohydrolase I {Trichoderma reesei, ct-cbh I [TaxId: 51453]}
Probab=19.46 E-value=19 Score=18.80 Aligned_cols=16 Identities=31% Similarity=0.787 Sum_probs=12.2
Q ss_pred cccccCcccccCCCCC
Q 040528 58 SQADIGPDCCRTGLQC 73 (86)
Q Consensus 58 Ge~~iGp~CC~A~~~C 73 (86)
|..+-||.||.+...|
T Consensus 10 G~g~~G~T~C~~g~~C 25 (36)
T d1cbha_ 10 GIGYSGPTVCASGTTC 25 (36)
T ss_dssp CTTCCSCCCCCTTCCE
T ss_pred CCCccCCCccCCCCEe
Confidence 5568899999985555
No 2
>d1ansa_ g.11.1.1 (A:) Neurotoxin III (ATX III) {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=11.95 E-value=39 Score=16.59 Aligned_cols=12 Identities=42% Similarity=1.171 Sum_probs=8.6
Q ss_pred ccccC-------CCCCchh
Q 040528 65 DCCRT-------GLQCSPL 76 (86)
Q Consensus 65 ~CC~A-------~~~CWP~ 76 (86)
.||-. +++|.|.
T Consensus 2 sccpcywggcpwgqncype 20 (27)
T d1ansa_ 2 SCCPCYWGGCPWGQNCYPE 20 (27)
T ss_dssp CSCCSTTTTCSSSCSSCSS
T ss_pred ccccccccCCccccccccC
Confidence 46665 7888885
No 3
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=8.52 E-value=75 Score=19.36 Aligned_cols=17 Identities=0% Similarity=0.053 Sum_probs=13.4
Q ss_pred hhcccchHHHHHHHHHh
Q 040528 41 LMELKSCSNEIVIFFIN 57 (86)
Q Consensus 41 L~~l~sCt~EIv~ffln 57 (86)
.+++.||.+||+.-.|.
T Consensus 14 ~vni~gC~~ai~~~~Lk 30 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIALK 30 (95)
T ss_dssp EEECCSCHHHHHHHHHH
T ss_pred EEEeccCHHHHHHHHHH
Confidence 57899999998776654
No 4
>d1n1ua_ g.3.3.1 (A:) Kalata B1 {African plant (Oldenlandia affinis) [TaxId: 60225]}
Probab=8.08 E-value=61 Score=16.16 Aligned_cols=18 Identities=28% Similarity=0.711 Sum_probs=10.0
Q ss_pred cccccCcccccCCCCC-ch
Q 040528 58 SQADIGPDCCRTGLQC-SP 75 (86)
Q Consensus 58 Ge~~iGp~CC~A~~~C-WP 75 (86)
||+-+|..|=.-+-.| ||
T Consensus 2 getc~ggtc~tpgctcswp 20 (29)
T d1n1ua_ 2 GETCVGGTCNTPGATCSWP 20 (29)
T ss_dssp CCBCTTSCCSSTTCEEETT
T ss_pred CceeeCCeecCCCceeecc
Confidence 5665555554445555 77
No 5
>d2crda_ g.3.7.2 (A:) Charybdotoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]}
Probab=8.04 E-value=20 Score=19.01 Aligned_cols=10 Identities=30% Similarity=0.806 Sum_probs=6.6
Q ss_pred ccCCCCCchh
Q 040528 67 CRTGLQCSPL 76 (86)
Q Consensus 67 C~A~~~CWP~ 76 (86)
|.+..+|||-
T Consensus 7 Ct~SkeCW~v 16 (37)
T d2crda_ 7 CTTSKECWSV 16 (37)
T ss_dssp CSSTHHHHHH
T ss_pred eccchhHhHH
Confidence 4556778884
No 6
>d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]}
Probab=7.89 E-value=88 Score=18.77 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=10.8
Q ss_pred cchHHHHHHHHHhcc
Q 040528 45 KSCSNEIVIFFINSQ 59 (86)
Q Consensus 45 ~sCt~EIv~fflnGe 59 (86)
+.=+.|++.+|++.|
T Consensus 296 pe~v~~~i~~Fl~~~ 310 (310)
T d1b6ga_ 296 EQVAREALKHFAETE 310 (310)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCC
Confidence 345778888888765
No 7
>d2ad6b1 a.137.2.1 (B:1-69) Methanol dehydrogenase, light chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Probab=7.00 E-value=64 Score=18.91 Aligned_cols=9 Identities=22% Similarity=0.611 Sum_probs=7.5
Q ss_pred ccCCCCCch
Q 040528 67 CRTGLQCSP 75 (86)
Q Consensus 67 C~A~~~CWP 75 (86)
|+|-.+||-
T Consensus 6 CkapG~CWE 14 (69)
T d2ad6b1 6 CKEPGNCWE 14 (69)
T ss_dssp CSBTTBCCC
T ss_pred cCCCCCccC
Confidence 788889993
No 8
>d1w6sb_ a.137.2.1 (B:) Methanol dehydrogenase, light chain {Methylobacterium extorquens [TaxId: 408]}
Probab=6.72 E-value=67 Score=18.99 Aligned_cols=9 Identities=22% Similarity=0.715 Sum_probs=7.4
Q ss_pred ccCCCCCch
Q 040528 67 CRTGLQCSP 75 (86)
Q Consensus 67 C~A~~~CWP 75 (86)
|+|-.+||-
T Consensus 6 CkapG~CWE 14 (73)
T d1w6sb_ 6 CKAAGNCWE 14 (73)
T ss_dssp CSBTTBCCC
T ss_pred cCCCCCccC
Confidence 788889993
No 9
>d1d2zb_ a.77.1.2 (B:) Tube death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=6.27 E-value=36 Score=22.62 Aligned_cols=34 Identities=29% Similarity=0.525 Sum_probs=21.1
Q ss_pred cccccccccccCCCCCCCCchhhhhhccCcchhhhhhhhcc
Q 040528 4 ITNATSRNDCLNNNMKPGYNLATRLEVSGGQMECWNVLMEL 44 (86)
Q Consensus 4 i~~~~~~r~~~~~~m~~~~~L~~rL~~~~~~~~CW~sL~~l 44 (86)
++..++-|.++-. .-..|+.-|+ ..+||-.|+.+
T Consensus 5 ~t~sTeiRkl~~~---~~~~La~iLD----~~~~WkkLm~~ 38 (150)
T d1d2zb_ 5 YSRNTELRRVEDN---DIYRLAKILD----ENSCWRKLMSI 38 (150)
T ss_dssp CCTTSBGGGSCHH---HHHHHHHHHH----GGGHHHHHHHH
T ss_pred ccCcceeecCCHH---HHHHHHHHcC----ccchHHHHHHH
Confidence 3456677777543 2345666665 45599998854
No 10
>d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]}
Probab=6.27 E-value=1.3e+02 Score=17.05 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=9.5
Q ss_pred HHHHHHHHHhccc
Q 040528 48 SNEIVIFFINSQA 60 (86)
Q Consensus 48 t~EIv~fflnGe~ 60 (86)
+.+++.-||+.||
T Consensus 218 va~~I~~~L~~~~ 230 (230)
T d1jmkc_ 218 NAGILLEFLNTQT 230 (230)
T ss_dssp HHHHHHHHHTCBC
T ss_pred HHHHHHHHHhhcC
Confidence 4567888888775
Done!