BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040529
(806 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 335 SQRLKQLASNCEYADVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHLR 394
+ L L N + D + V G Q+HK IL+ S F+ MF + M ES + V +
Sbjct: 13 ADELGGLWENSRFTDCCLCVA--GQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN 70
Query: 395 DVSLKAFKIMLEFMYSGE 412
DV + FK M+ F+Y+G+
Sbjct: 71 DVEPEVFKEMMCFIYTGK 88
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 335 SQRLKQLASNCEYADVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHLR 394
+ L L N + D + V G Q+HK IL+ S F+ MF + M ES + V +
Sbjct: 162 ADELGGLWENSRFTDCCLCV--AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN 219
Query: 395 DVSLKAFKIMLEFMYSGE 412
DV + FK M+ F+Y+G+
Sbjct: 220 DVEPEVFKEMMCFIYTGK 237
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 335 SQRLKQLASNCEYADVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHLR 394
+ L L N + D + V G Q+HK IL+ S F+ F + ES + V +
Sbjct: 22 ADELGGLWENSRFTDCCLCVA--GQEFQAHKAILAARSPVFSAXFEHEXEESKKNRVEIN 79
Query: 395 DVSLKAFKIMLEFMYSGE 412
DV + FK F+Y+G+
Sbjct: 80 DVEPEVFKEXXCFIYTGK 97
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 328 PFGLP-----------INSQRLKQLASNCEYADVNIYVESHGLVAQSHKIILSLWSVPFA 376
P G+P +N QR + L DV I VE G +H+ +L+ S F
Sbjct: 10 PIGIPFPDHSSDILSGLNEQRTQGL-----LCDVVILVE--GREFPTHRSVLAACSQYFK 62
Query: 377 KMFTNGMSESYSSDVHLRDVSLKAFKIMLEFMYSGELNI 415
K+FT+G + + VS +A +++F Y+ L +
Sbjct: 63 KLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTV 101
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 338 LKQLASNCEYADVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHLRDVS 397
L +L S DV I V ++HK +L S F +FT+ + + S +++
Sbjct: 20 LNRLRSRDILTDVVIVVSREQF--RAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN 77
Query: 398 LKAFKIMLEFMYSGELNIED 417
+ F I+L+FMY+ LN+ +
Sbjct: 78 PEGFNILLDFMYTSRLNLRE 97
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 32.7 bits (73), Expect = 0.86, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 333 INSQRLKQLASNCEYADVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYSSDVH 392
+N QR + L DV I VE G +H+ +L+ S F K+FT+G +
Sbjct: 16 LNEQRTQGL-----LCDVVILVE--GREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYE 68
Query: 393 LRDVSLKAFKIMLEFMYSGELNI 415
+ VS +A +++F Y+ L +
Sbjct: 69 IDFVSAEALTALMDFAYTATLTV 91
>pdb|1CNV|A Chain A, Crystal Structure Of Concanavalin B At 1.65 A Resolution
Length = 299
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 11/59 (18%)
Query: 116 GKGRYPFQNLVFQWLDSSPNCSVRYVGLSSW----DKHVGYR-------NVNVLPLTQN 163
G G P L+ Q L P+ RY G++ W DK GY N +P T N
Sbjct: 235 GGGYIPPSALIGQVLPYLPDLQTRYAGIALWNRQADKETGYSTNIIRYLNATAMPFTSN 293
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 338 LKQLASNCEYADVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHLRDVS 397
L +L S DV I V ++HK +L S F +FT+ + + S +++
Sbjct: 23 LNRLRSRDILTDVVIVVSREQF--RAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEIN 80
Query: 398 LKAFKIMLEFMYSGELNIED 417
+ F I+L+FMY+ LN+ +
Sbjct: 81 PEGFCILLDFMYTSRLNLRE 100
>pdb|3LL4|A Chain A, Structure Of The H13a Mutant Of Ykr043c In Complex With
Fructose-1,6- Bisphosphate
pdb|3LL4|B Chain B, Structure Of The H13a Mutant Of Ykr043c In Complex With
Fructose-1,6- Bisphosphate
Length = 292
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 123 QNLVFQWLDS-SPNCSVRYVGLSSWDKHVGYRNVNVLPLT 161
+NL FQ + S +P C + G + W K Y + LPLT
Sbjct: 15 ENLYFQGMPSLTPRCIIVRAGQTEWSKSGQYTGLTDLPLT 54
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 1/107 (0%)
Query: 598 EAIIFIESGLAVPGSNQSVRFQHRRSSFKELQYICDGDSNGVLYFAGTSYGEHPWVNPVL 657
+A +FI G+ P + + R +Q + G L Y HP P
Sbjct: 234 DAALFIGEGIVFPAALNADGTADCRLGRLPVQSGAPAGTRGTLLIRPEQYSLHPHSAPAA 293
Query: 658 AKRINITASSPISRYTDPKALASRTYQGLSF-AGPRMEDGHNCTWWM 703
+ + ++P +R+T+ A +T L+ + P + DG + +
Sbjct: 294 SIHAVVLKTTPKARHTEISLRAGQTVLTLNLPSAPTLSDGISAVLHL 340
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,455,212
Number of Sequences: 62578
Number of extensions: 1029795
Number of successful extensions: 1971
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1962
Number of HSP's gapped (non-prelim): 15
length of query: 806
length of database: 14,973,337
effective HSP length: 107
effective length of query: 699
effective length of database: 8,277,491
effective search space: 5785966209
effective search space used: 5785966209
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)