Query 040529
Match_columns 806
No_of_seqs 657 out of 3489
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:20:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 1.9E-51 4.1E-56 474.6 33.8 350 326-708 15-415 (571)
2 PHA02713 hypothetical protein; 100.0 1.2E-46 2.7E-51 436.6 33.4 346 329-708 7-451 (557)
3 PHA02790 Kelch-like protein; P 100.0 3.3E-42 7.2E-47 394.2 32.8 324 335-708 10-395 (480)
4 PHA03098 kelch-like protein; P 100.0 1.2E-40 2.7E-45 388.9 31.3 324 344-707 6-376 (534)
5 KOG4276 Predicted hormone rece 100.0 1.5E-31 3.2E-36 221.6 11.2 110 694-806 2-113 (113)
6 KOG4350 Uncharacterized conser 100.0 3.1E-30 6.6E-35 266.3 20.6 367 335-800 32-413 (620)
7 PF12248 Methyltransf_FA: Farn 100.0 2E-28 4.3E-33 219.1 10.8 98 44-152 1-102 (102)
8 KOG4441 Proteins containing BT 100.0 7.3E-28 1.6E-32 278.7 18.4 117 187-305 15-139 (571)
9 KOG0783 Uncharacterized conser 99.9 5.5E-27 1.2E-31 259.7 14.1 275 195-502 545-863 (1267)
10 PHA02713 hypothetical protein; 99.9 5.7E-26 1.2E-30 264.0 15.2 116 188-306 5-129 (557)
11 PHA02790 Kelch-like protein; P 99.9 3.1E-22 6.7E-27 229.6 20.6 105 197-305 11-125 (480)
12 KOG2075 Topoisomerase TOP1-int 99.9 2.5E-22 5.5E-27 213.8 17.2 238 334-590 101-344 (521)
13 PHA03098 kelch-like protein; P 99.9 1.4E-20 3.1E-25 220.0 21.7 95 204-299 5-103 (534)
14 KOG4591 Uncharacterized conser 99.7 1.3E-17 2.7E-22 158.2 9.6 172 332-512 51-223 (280)
15 KOG4682 Uncharacterized conser 99.7 1.6E-16 3.6E-21 165.7 10.7 239 338-587 60-318 (488)
16 PF00651 BTB: BTB/POZ domain; 99.7 5.9E-16 1.3E-20 141.5 11.1 109 338-451 1-110 (111)
17 PF00651 BTB: BTB/POZ domain; 99.5 5.3E-15 1.2E-19 135.1 6.5 100 199-299 1-109 (111)
18 KOG2838 Uncharacterized conser 99.5 1.4E-14 3E-19 143.8 8.9 222 190-456 112-392 (401)
19 PF07707 BACK: BTB And C-termi 99.5 7.4E-15 1.6E-19 132.4 5.2 100 458-579 1-100 (103)
20 smart00225 BTB Broad-Complex, 99.4 4.2E-13 9.1E-18 116.7 8.9 90 349-445 1-90 (90)
21 smart00875 BACK BTB And C-term 99.4 5.7E-13 1.2E-17 119.3 8.9 99 458-579 1-99 (101)
22 KOG4350 Uncharacterized conser 99.4 1.2E-13 2.6E-18 144.0 4.5 110 194-305 30-150 (620)
23 KOG0511 Ankyrin repeat protein 99.3 1.8E-13 4E-18 141.7 1.3 293 197-507 135-451 (516)
24 KOG4591 Uncharacterized conser 99.3 1E-12 2.2E-17 125.1 4.8 117 190-306 48-172 (280)
25 smart00225 BTB Broad-Complex, 99.2 7.2E-12 1.6E-16 108.8 4.2 83 210-294 1-90 (90)
26 KOG2075 Topoisomerase TOP1-int 99.1 5.9E-11 1.3E-15 127.7 5.8 113 187-299 93-215 (521)
27 KOG0783 Uncharacterized conser 98.3 2.7E-06 5.8E-11 97.0 9.1 92 206-298 708-812 (1267)
28 cd00057 FA58C Substituted upda 98.2 7.2E-06 1.6E-10 78.2 10.3 95 697-803 43-143 (143)
29 KOG4682 Uncharacterized conser 97.9 1.6E-05 3.4E-10 84.6 5.9 104 199-305 60-175 (488)
30 KOG2838 Uncharacterized conser 97.8 5.5E-05 1.2E-09 76.3 7.6 136 259-416 57-199 (401)
31 PF00754 F5_F8_type_C: F5/8 ty 97.6 0.00062 1.3E-08 63.1 11.8 89 696-789 34-122 (129)
32 TIGR03548 mutarot_permut cycli 97.3 0.0005 1.1E-08 75.3 7.5 68 639-706 125-203 (323)
33 KOG2716 Polymerase delta-inter 97.3 0.0014 3.1E-08 66.5 10.1 98 350-453 7-106 (230)
34 TIGR03547 muta_rot_YjhT mutatr 97.2 0.00061 1.3E-08 75.4 6.7 69 639-707 65-186 (346)
35 PF13964 Kelch_6: Kelch motif 97.1 0.00072 1.6E-08 51.9 4.3 41 625-671 10-50 (50)
36 PF07738 Sad1_UNC: Sad1 / UNC- 97.0 0.0089 1.9E-07 56.5 12.2 107 689-804 21-134 (135)
37 PLN02153 epithiospecifier prot 96.9 0.0025 5.5E-08 70.3 8.7 68 639-706 87-176 (341)
38 PRK14131 N-acetylneuraminic ac 96.9 0.0035 7.7E-08 70.2 9.8 60 648-707 106-207 (376)
39 KOG3473 RNA polymerase II tran 96.9 0.005 1.1E-07 52.7 7.9 85 350-436 19-111 (112)
40 PF02214 BTB_2: BTB/POZ domain 96.8 0.0023 5E-08 56.4 5.8 88 350-444 1-94 (94)
41 TIGR03548 mutarot_permut cycli 96.7 0.0093 2E-07 65.3 11.0 67 639-705 74-155 (323)
42 PF11822 DUF3342: Domain of un 96.7 0.0018 3.8E-08 68.6 4.5 89 358-451 13-103 (317)
43 TIGR03547 muta_rot_YjhT mutatr 96.6 0.0034 7.4E-08 69.4 6.7 61 648-708 168-238 (346)
44 PLN02153 epithiospecifier prot 96.2 0.016 3.5E-07 63.9 8.7 79 625-705 192-292 (341)
45 smart00231 FA58C Coagulation f 96.1 0.038 8.2E-07 52.5 9.9 93 698-803 43-138 (139)
46 PLN02193 nitrile-specifier pro 96.1 0.034 7.4E-07 64.2 11.1 68 639-706 230-311 (470)
47 PRK14131 N-acetylneuraminic ac 96.1 0.0091 2E-07 66.9 6.1 61 648-708 189-259 (376)
48 PLN02193 nitrile-specifier pro 95.9 0.017 3.8E-07 66.6 7.5 68 639-706 280-360 (470)
49 smart00612 Kelch Kelch domain. 95.9 0.013 2.8E-07 43.7 4.3 28 647-675 14-41 (47)
50 KOG1987 Speckle-type POZ prote 95.8 0.0025 5.5E-08 68.8 0.4 123 360-488 111-238 (297)
51 PF01344 Kelch_1: Kelch motif; 95.7 0.0096 2.1E-07 44.8 2.9 28 639-666 13-46 (47)
52 PF02214 BTB_2: BTB/POZ domain 94.9 0.055 1.2E-06 47.5 5.6 80 211-293 1-94 (94)
53 KOG2716 Polymerase delta-inter 94.7 0.05 1.1E-06 55.4 5.5 86 211-299 7-103 (230)
54 smart00512 Skp1 Found in Skp1 94.6 0.17 3.8E-06 45.4 8.3 87 349-437 3-104 (104)
55 PF11822 DUF3342: Domain of un 94.0 0.049 1.1E-06 57.9 3.8 132 219-367 13-154 (317)
56 PF13415 Kelch_3: Galactose ox 93.8 0.12 2.6E-06 39.3 4.7 44 628-676 3-46 (49)
57 KOG1665 AFH1-interacting prote 93.3 0.32 7E-06 48.5 7.8 91 349-446 10-105 (302)
58 PF03931 Skp1_POZ: Skp1 family 93.2 0.54 1.2E-05 37.8 7.8 57 350-410 3-59 (62)
59 KOG1987 Speckle-type POZ prote 92.7 0.053 1.1E-06 58.6 1.7 91 209-299 99-199 (297)
60 smart00607 FTP eel-Fucolectin 92.0 1.5 3.2E-05 42.2 10.3 97 694-804 46-147 (151)
61 KOG1724 SCF ubiquitin ligase, 91.7 1.2 2.6E-05 43.2 9.3 103 351-456 8-131 (162)
62 KOG2714 SETA binding protein S 91.6 0.76 1.6E-05 50.4 8.6 86 350-442 13-102 (465)
63 COG5201 SKP1 SCF ubiquitin lig 90.6 1.6 3.4E-05 39.8 8.2 104 349-456 3-126 (158)
64 PF07646 Kelch_2: Kelch motif; 89.1 0.55 1.2E-05 35.7 3.8 18 648-665 30-47 (49)
65 KOG0379 Kelch repeat-containin 88.5 1.2 2.5E-05 51.7 7.6 61 648-708 139-209 (482)
66 PF01344 Kelch_1: Kelch motif; 88.4 0.47 1E-05 35.4 2.9 34 673-706 10-45 (47)
67 PF13964 Kelch_6: Kelch motif 88.2 0.57 1.2E-05 35.7 3.3 36 673-708 10-47 (50)
68 KOG4693 Uncharacterized conser 87.9 1.2 2.5E-05 46.0 6.2 72 638-709 192-288 (392)
69 PF13418 Kelch_4: Galactose ox 87.9 0.31 6.7E-06 36.9 1.7 22 646-668 27-48 (49)
70 KOG3473 RNA polymerase II tran 87.0 1.5 3.2E-05 38.0 5.3 73 211-285 19-111 (112)
71 PF06439 DUF1080: Domain of Un 85.3 2 4.2E-05 42.6 6.3 117 32-157 56-184 (185)
72 KOG0511 Ankyrin repeat protein 85.1 0.48 1E-05 50.8 1.8 88 347-442 149-236 (516)
73 KOG1230 Protein containing rep 83.6 3 6.5E-05 45.7 7.0 68 613-685 174-253 (521)
74 KOG1230 Protein containing rep 81.7 20 0.00044 39.6 12.3 90 614-708 64-173 (521)
75 PF07646 Kelch_2: Kelch motif; 81.4 2 4.3E-05 32.5 3.5 34 673-706 10-47 (49)
76 PF01466 Skp1: Skp1 family, di 81.3 3.1 6.7E-05 35.2 5.0 33 424-456 15-47 (78)
77 smart00512 Skp1 Found in Skp1 81.3 1.3 2.8E-05 39.7 2.8 54 210-265 3-64 (104)
78 smart00612 Kelch Kelch domain. 77.4 1.8 3.9E-05 31.7 2.1 32 677-708 2-34 (47)
79 KOG4152 Host cell transcriptio 74.7 2 4.3E-05 48.0 2.4 85 612-703 28-120 (830)
80 PF03931 Skp1_POZ: Skp1 family 72.3 4.8 0.0001 32.3 3.5 52 211-264 3-59 (62)
81 KOG1778 CREB binding protein/P 71.9 2.5 5.5E-05 45.6 2.3 131 360-496 37-168 (319)
82 KOG4693 Uncharacterized conser 71.8 8.7 0.00019 39.8 5.9 72 637-708 250-338 (392)
83 KOG1724 SCF ubiquitin ligase, 68.4 6.5 0.00014 38.2 4.1 87 211-299 7-125 (162)
84 KOG2715 Uncharacterized conser 64.4 16 0.00034 35.2 5.6 89 208-298 20-119 (210)
85 KOG2714 SETA binding protein S 62.4 14 0.00031 40.9 5.7 85 211-298 13-112 (465)
86 KOG1094 Discoidin domain recep 59.4 33 0.00072 39.9 8.0 102 694-804 73-179 (807)
87 KOG0379 Kelch repeat-containin 58.9 34 0.00073 39.7 8.5 87 614-705 161-257 (482)
88 KOG2715 Uncharacterized conser 58.9 28 0.0006 33.6 6.2 102 344-452 17-122 (210)
89 KOG1665 AFH1-interacting prote 57.9 24 0.00051 35.7 5.8 84 209-295 9-105 (302)
90 PLN02772 guanylate kinase 56.1 27 0.00059 39.0 6.6 55 623-682 31-94 (398)
91 PF06588 Muskelin_N: Muskelin 55.9 64 0.0014 32.2 8.4 101 696-804 41-147 (199)
92 COG5201 SKP1 SCF ubiquitin lig 55.9 9.6 0.00021 34.9 2.5 89 209-299 2-120 (158)
93 PF13415 Kelch_3: Galactose ox 51.8 17 0.00038 27.3 3.1 30 675-704 2-34 (49)
94 PF13418 Kelch_4: Galactose ox 51.5 13 0.00028 27.8 2.4 32 674-705 12-45 (49)
95 PF07707 BACK: BTB And C-termi 49.8 36 0.00078 29.7 5.4 81 426-507 2-102 (103)
96 KOG3516 Neurexin IV [Signal tr 47.1 51 0.0011 41.3 7.4 96 696-803 71-172 (1306)
97 KOG2687 Spindle pole body prot 45.6 1.4E+02 0.0031 33.3 10.0 106 691-804 295-409 (414)
98 COG3055 Uncharacterized protei 45.0 51 0.0011 36.0 6.3 51 658-708 70-132 (381)
99 KOG2437 Muskelin [Signal trans 38.3 72 0.0016 36.3 6.3 30 677-706 275-305 (723)
100 KOG3840 Uncharaterized conserv 38.3 57 0.0012 34.5 5.3 86 348-439 96-186 (438)
101 cd02858 Esterase_N_term Estera 30.4 2.7E+02 0.0059 23.6 7.5 62 29-90 4-68 (85)
102 PF13854 Kelch_5: Kelch motif 27.8 60 0.0013 23.5 2.5 20 615-634 3-22 (42)
103 PF01466 Skp1: Skp1 family, di 27.3 45 0.00097 28.1 2.1 30 270-299 12-41 (78)
104 COG3055 Uncharacterized protei 26.0 91 0.002 34.1 4.5 46 639-684 94-156 (381)
105 KOG4152 Host cell transcriptio 24.7 3.9E+02 0.0085 30.7 9.1 90 612-708 132-249 (830)
106 KOG2723 Uncharacterized conser 23.1 1.6E+02 0.0036 30.1 5.5 89 351-446 12-104 (221)
107 PF07250 Glyoxal_oxid_N: Glyox 22.9 1.5E+02 0.0033 30.9 5.4 57 628-684 66-138 (243)
108 PF08268 FBA_3: F-box associat 22.2 3.9E+02 0.0084 24.4 7.6 30 636-665 4-37 (129)
109 PF13163 DUF3999: Protein of u 21.9 1.5E+02 0.0032 33.9 5.5 59 723-783 137-196 (429)
110 KOG3840 Uncharaterized conserv 20.3 5.3E+02 0.012 27.6 8.5 80 206-287 93-185 (438)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.9e-51 Score=474.64 Aligned_cols=350 Identities=25% Similarity=0.352 Sum_probs=322.4
Q ss_pred cCCCCcchHHHHHHhhhcCCCceeEEEEEcCeeeEEEeeHHHHhcCCHHHHHhhcCCCCCCCcceEEeCCCCHHHHHHHH
Q 040529 326 VFPFGLPINSQRLKQLASNCEYADVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHLRDVSLKAFKIML 405 (806)
Q Consensus 326 ~~~~~~~~~l~~l~~l~~~~~~sDV~l~v~~~~~~~~aHr~ILaa~S~yF~~mf~~~~~Es~~~~I~l~~v~~~~f~~lL 405 (806)
..+.+...+++.|+.+++.+.+|||+|.++++. |+|||.||||+|+||++||+++++|+.+.+|.|.++++.+++.++
T Consensus 15 ~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~--~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll 92 (571)
T KOG4441|consen 15 TDPSHSKFLLQGLNELREEGLLCDVTLLVGDRE--FPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLL 92 (571)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCceEEEEECCee--echHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHH
Confidence 344566777899999999999999999999954 999999999999999999999999999999999999999999999
Q ss_pred hHHhcCccccCCCCchhHHHHHHHHHHHhhCchHHHHHHHHHHhhcCCCCCcHHHHHHHhhhcCCHHHHHHHHHHHHhch
Q 040529 406 EFMYSGELNIEDSLDFGSLLLQLLILSDQFGVTLLHQECCKLLLECFSEDSVCPILQVVTPISSCKLIEETCERKFALHF 485 (806)
Q Consensus 406 ~fiYtg~l~i~~~~n~~~~v~~Ll~~A~~l~l~~L~~~c~~~L~~~l~~~n~~~~l~~~a~~~~~~~L~~~~~~~I~~nf 485 (806)
+|+||+++.++. +| +.+||.+|++||++.+++.|++||.++++++| |+.+..+|+.|+|.+|.+.+..||..||
T Consensus 93 ~y~Yt~~i~i~~-~n----Vq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~N-clgi~~~a~~~~~~~L~~~a~~~i~~~F 166 (571)
T KOG4441|consen 93 DYAYTGKLEISE-DN----VQELLEAASLLQIPEVVDACCEFLESQLDPSN-CLGIRRFAELHSCTELLEVADEYILQHF 166 (571)
T ss_pred HHhhcceEEech-Hh----HHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 999999999986 66 99999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hhhhccccccccCCHHHHHhhccCCCCCCCCHHHHHHHHHHHHhccccccCcchhhHHHhhcCchhhHHHHHHhHhhccc
Q 040529 486 DYCTTASLDFVFLDEATFSSIIRHPDLTVTSEERVLNAILMWGMKAKELCGWEEMDELIIKLTPELVFEERLQSVNYLLP 565 (806)
Q Consensus 486 ~~l~~~~~~F~~L~~~~l~~IL~sd~L~V~sE~~v~~avl~Wi~~~~~~~~w~~~~~~l~~~~p~~~~~~r~~~l~~Ll~ 565 (806)
.++ .++++|++||.+++..||++|.|+|.+|++||+++++|++++. +.|..+++.|++
T Consensus 167 ~~v-~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~---------------------~~R~~~~~~ll~ 224 (571)
T KOG4441|consen 167 AEV-SKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDF---------------------EEREEHLPALLE 224 (571)
T ss_pred HHH-hccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCH---------------------hhHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999984 678999999999
Q ss_pred cccccccChHHHhh-cccccccccchhHHHHHHHHHHHHhcCCCCCCCCCcccccccccccccceeeecCCCC-------
Q 040529 566 FVRFPLLPHALLKK-MENSCLNRQIPIFDNLVKEAIIFIESGLAVPGSNQSVRFQHRRSSFKELQYICDGDSN------- 637 (806)
Q Consensus 566 ~IRf~lls~~~L~~-v~~~~l~~~~~~~~~~l~ea~~~~~~~~~~~~~~~~~r~~~r~~~~~e~i~~~gG~~~------- 637 (806)
+||+|+|++.+|.. +...++++..+.|++++.+|++|+..+..++. ++++++++|. ...+.++++||..+
T Consensus 225 ~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~-~~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ 302 (571)
T KOG4441|consen 225 AVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPV-MQSPRTRPRR-SVSGKLVAVGGYNRQGQSLRS 302 (571)
T ss_pred hcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCcc-ccCCCcccCc-CCCCeEEEECCCCCCCcccce
Confidence 99999999999865 88889999999999999999999999887665 5888999987 55789999999753
Q ss_pred ------------------------------ceEEEecccC-C-----ceeEecCCCCcEEEeccCCCCCcC------CCC
Q 040529 638 ------------------------------GVLYFAGTSY-G-----EHPWVNPVLAKRINITASSPISRY------TDP 675 (806)
Q Consensus 638 ------------------------------gvlY~iGg~~-~-----sve~ynP~~~~w~~vt~s~~~~r~------~~~ 675 (806)
|.||++||.+ + ++++|||++++|..+ ++|+.+|. .+|
T Consensus 303 ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~-a~M~~~R~~~~v~~l~g 381 (571)
T KOG4441|consen 303 VECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV-APMNTKRSDFGVAVLDG 381 (571)
T ss_pred eEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc-CCccCccccceeEEECC
Confidence 3899999988 3 899999999999885 67788884 567
Q ss_pred eEEeecccCCccc-cCCeeecCCCCeeEEEecCC
Q 040529 676 KALASRTYQGLSF-AGPRMEDGHNCTWWMVDIGQ 708 (806)
Q Consensus 676 ~~~v~~g~~g~~~-~~~~~y~~~~nsW~~vd~~~ 708 (806)
++|++||++|... .+.++|||.+|+|..++...
T Consensus 382 ~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~ 415 (571)
T KOG4441|consen 382 KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML 415 (571)
T ss_pred EEEEEeccccccccccEEEecCCCCcccccCCCC
Confidence 8999999998866 67899999999999988554
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=436.62 Aligned_cols=346 Identities=14% Similarity=0.069 Sum_probs=286.3
Q ss_pred CCcchHHHHHHhhhcCCCceeEEEEEc-CeeeEEEeeHHHHhcCCHHHHHhhcCCCCCCC-cceEEeCCCCHHHHHHHHh
Q 040529 329 FGLPINSQRLKQLASNCEYADVNIYVE-SHGLVAQSHKIILSLWSVPFAKMFTNGMSESY-SSDVHLRDVSLKAFKIMLE 406 (806)
Q Consensus 329 ~~~~~~l~~l~~l~~~~~~sDV~l~v~-~~~~~~~aHr~ILaa~S~yF~~mf~~~~~Es~-~~~I~l~~v~~~~f~~lL~ 406 (806)
.+...+++.|++|+.++.+|||+|.++ ++ +|+|||.|||++|+||++||+++|+|+. +.+|.|+++++++|+.+|+
T Consensus 7 ~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~--~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~ 84 (557)
T PHA02713 7 KHNRRVVSNISNLLDDDILCDVIITIGDGE--EIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQ 84 (557)
T ss_pred hhhHHHHHHHHHHHhCCCCCCEEEEeCCCC--EEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHH
Confidence 345667899999999999999999997 54 4999999999999999999999999874 7899999999999999999
Q ss_pred HHhcCccccCCCCchhHHHHHHHHHHHhhCchHHHHHHHHHHhhcCCCCCcHHHHHHHhhhcCCHHHHHHHHHHHHhchh
Q 040529 407 FMYSGELNIEDSLDFGSLLLQLLILSDQFGVTLLHQECCKLLLECFSEDSVCPILQVVTPISSCKLIEETCERKFALHFD 486 (806)
Q Consensus 407 fiYtg~l~i~~~~n~~~~v~~Ll~~A~~l~l~~L~~~c~~~L~~~l~~~n~~~~l~~~a~~~~~~~L~~~~~~~I~~nf~ 486 (806)
|+||+++ +. +| +.+||.+|++||++.|++.|++||.+.++++| |+.++.++..+.+..|.+.|.+||.+||.
T Consensus 85 y~Yt~~i--~~-~n----v~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~N-Cl~i~~~~~~~~~~~L~~~a~~~i~~~f~ 156 (557)
T PHA02713 85 YLYNRHI--SS-MN----VIDVLKCADYLLIDDLVTDCESYIKDYTNHDT-CIYMYHRLYEMSHIPIVKYIKRMLMSNIP 156 (557)
T ss_pred HhcCCCC--CH-HH----HHHHHHHHHHHCHHHHHHHHHHHHHhhCCccc-hHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 9999984 43 55 99999999999999999999999999999999 99999877888888999999999999999
Q ss_pred hhhccccccccCCHHHHHhhccCCC-CCCCCHHHHHHHHHHHHhccccccCcchhhHHHhhcCchhhHHHHHHhHhhccc
Q 040529 487 YCTTASLDFVFLDEATFSSIIRHPD-LTVTSEERVLNAILMWGMKAKELCGWEEMDELIIKLTPELVFEERLQSVNYLLP 565 (806)
Q Consensus 487 ~l~~~~~~F~~L~~~~l~~IL~sd~-L~V~sE~~v~~avl~Wi~~~~~~~~w~~~~~~l~~~~p~~~~~~r~~~l~~Ll~ 565 (806)
++ .++++|++|+.+.|.+||++|+ |+|.+|++||+++++|++|+. +.| +.+.+||+
T Consensus 157 ~v-~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~---------------------~~r-~~~~~ll~ 213 (557)
T PHA02713 157 TL-ITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNY---------------------ITE-EQLLCILS 213 (557)
T ss_pred HH-hCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCH---------------------HHH-HHHhhhHh
Confidence 99 8999999999999999999987 799999999999999999984 344 44679999
Q ss_pred cccccccChHHHhhcccccccccchhHHHHHHHHHHHHhcCCCC------------C-----------------CCCCcc
Q 040529 566 FVRFPLLPHALLKKMENSCLNRQIPIFDNLVKEAIIFIESGLAV------------P-----------------GSNQSV 616 (806)
Q Consensus 566 ~IRf~lls~~~L~~v~~~~l~~~~~~~~~~l~ea~~~~~~~~~~------------~-----------------~~~~~~ 616 (806)
+||||+|++.++..+...+++...+.|.+++.+++.++...... . .+++.+
T Consensus 214 ~VR~~~l~~~~~~~~~~~~~i~~~~~c~~~l~~a~~~~~~~~r~~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~ 293 (557)
T PHA02713 214 CIDIQNLDKKSRLLLYSNKTINMYPSCIQFLLDNKQNRNIIPRQLCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNH 293 (557)
T ss_pred hhhHhhcchhhhhhhcchHHHHhhHHHHHHHhhhhhhcccCCcceEEEEecCccccCCCCEEEEeCCCCeEEECCCCCcc
Confidence 99999999998767778888888999999999987653211000 0 011111
Q ss_pred cccccccccccceeeecCCC-------------------------------------CceEEEecccCC-----ceeEec
Q 040529 617 RFQHRRSSFKELQYICDGDS-------------------------------------NGVLYFAGTSYG-----EHPWVN 654 (806)
Q Consensus 617 r~~~r~~~~~e~i~~~gG~~-------------------------------------~gvlY~iGg~~~-----sve~yn 654 (806)
+.........+.+|++||.. +|.||++||..+ ++++||
T Consensus 294 r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Yd 373 (557)
T PHA02713 294 IINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYT 373 (557)
T ss_pred ccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEE
Confidence 11111223467899999942 248999999753 699999
Q ss_pred CCCCcEEEeccCCCCCcC------CCCeEEeecccCCcc-------------------ccCCeeecCCCCeeEEEecCC
Q 040529 655 PVLAKRINITASSPISRY------TDPKALASRTYQGLS-------------------FAGPRMEDGHNCTWWMVDIGQ 708 (806)
Q Consensus 655 P~~~~w~~vt~s~~~~r~------~~~~~~v~~g~~g~~-------------------~~~~~~y~~~~nsW~~vd~~~ 708 (806)
|.+++|..++ +||.+|. .++++|++||.++.. ....++|||.+|+|..++...
T Consensus 374 p~~~~W~~~~-~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~ 451 (557)
T PHA02713 374 MGDDKWKMLP-DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW 451 (557)
T ss_pred CCCCeEEECC-CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC
Confidence 9999998875 4566653 457899999976431 234567999999999887654
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=3.3e-42 Score=394.21 Aligned_cols=324 Identities=16% Similarity=0.169 Sum_probs=259.4
Q ss_pred HHHHHhhhcCCCceeEEEEEcCeeeEEEeeHHHHhcCCHHHHHhhcCCCCCCCcceEEe--CCCCHHHHHHHHhHHhcCc
Q 040529 335 SQRLKQLASNCEYADVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHL--RDVSLKAFKIMLEFMYSGE 412 (806)
Q Consensus 335 l~~l~~l~~~~~~sDV~l~v~~~~~~~~aHr~ILaa~S~yF~~mf~~~~~Es~~~~I~l--~~v~~~~f~~lL~fiYtg~ 412 (806)
.+++..|+.++.+|||++.++.. |+|||.|||+.|+||++||+++|+|+.+ +|.+ .++++++|+.+|+|+|||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~---~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~ 85 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAIGGN---IIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGK 85 (480)
T ss_pred hhhHHHHHhhhhhceEEEEcCcE---EeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeee
Confidence 46788899999999999998873 9999999999999999999999999965 5665 3899999999999999999
Q ss_pred cccCCCCchhHHHHHHHHHHHhhCchHHHHHHHHHHhhcCCCCCcHHHHHHHhhhcCCHHHHHHHHHHHHhchhhhhccc
Q 040529 413 LNIEDSLDFGSLLLQLLILSDQFGVTLLHQECCKLLLECFSEDSVCPILQVVTPISSCKLIEETCERKFALHFDYCTTAS 492 (806)
Q Consensus 413 l~i~~~~n~~~~v~~Ll~~A~~l~l~~L~~~c~~~L~~~l~~~n~~~~l~~~a~~~~~~~L~~~~~~~I~~nf~~l~~~~ 492 (806)
+.++. +| +.+||.+|++||++.+++.|++||.+.|+++| |+.++.+|+.|+|.+|.+.|.+||.+||.++ .++
T Consensus 86 l~it~-~n----V~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~N-Cl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v-~~~ 158 (480)
T PHA02790 86 VYIDS-HN----VVNLLRASILTSVEFIIYTCINFILRDFRKEY-CVECYMMGIEYGLSNLLCHTKDFIAKHFLEL-EDD 158 (480)
T ss_pred EEEec-cc----HHHHHHHHHHhChHHHHHHHHHHHHhhCCcch-HHHHHHHHHHhCHHHHHHHHHHHHHHhHHHH-hcc
Confidence 99997 67 99999999999999999999999999999999 9999999999999999999999999999999 665
Q ss_pred --cccccCCHHHHHhhccCCCCCCCCHHHHHHHHHHHHhccccccCcchhhHHHhhcCchhhHHHHHHhHhhcccc-ccc
Q 040529 493 --LDFVFLDEATFSSIIRHPDLTVTSEERVLNAILMWGMKAKELCGWEEMDELIIKLTPELVFEERLQSVNYLLPF-VRF 569 (806)
Q Consensus 493 --~~F~~L~~~~l~~IL~sd~L~V~sE~~v~~avl~Wi~~~~~~~~w~~~~~~l~~~~p~~~~~~r~~~l~~Ll~~-IRf 569 (806)
++|+.|+. .+||++|+|+|.+|++||+++++|++++ ..|...+..++++ ||+
T Consensus 159 ~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~----------------------~~~~~~l~~~vr~~ir~ 213 (480)
T PHA02790 159 IIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMKR----------------------RNRLGNLLLLIKNVIRS 213 (480)
T ss_pred cchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHhh----------------------HHHHHHHHHHHHhcCCh
Confidence 89999996 6799999999999999999999999985 3455566666666 899
Q ss_pred cccChHHHhhcccccccccchhHHHHHHHHHHHHhcCCCCC--------CCCCccc----cccc-ccccccceeeecCCC
Q 040529 570 PLLPHALLKKMENSCLNRQIPIFDNLVKEAIIFIESGLAVP--------GSNQSVR----FQHR-RSSFKELQYICDGDS 636 (806)
Q Consensus 570 ~lls~~~L~~v~~~~l~~~~~~~~~~l~ea~~~~~~~~~~~--------~~~~~~r----~~~r-~~~~~e~i~~~gG~~ 636 (806)
+++++..+..+ ..++.++..++....... ....... .... .....+.+|++||..
T Consensus 214 ~~l~~~~l~~~------------~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~~ 281 (480)
T PHA02790 214 NYLSPRGINNV------------KWILDCTKIFHCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWM 281 (480)
T ss_pred hhCCHHHHHHH------------HHHHHHHHHhhccccccccccccccccCCcccceeeccCCcceEEECCEEEEEcCCC
Confidence 99988877432 233334433322110000 0000000 0111 112457889999842
Q ss_pred ------------------------------------CceEEEecccC--CceeEecCCCCcEEEeccCCCCCc------C
Q 040529 637 ------------------------------------NGVLYFAGTSY--GEHPWVNPVLAKRINITASSPISR------Y 672 (806)
Q Consensus 637 ------------------------------------~gvlY~iGg~~--~sve~ynP~~~~w~~vt~s~~~~r------~ 672 (806)
+|.||++||.. .++++|||.+++|..++ +|+.+| .
T Consensus 282 ~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~-~l~~~r~~~~~~~ 360 (480)
T PHA02790 282 NNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMP-SLLKPRCNPAVAS 360 (480)
T ss_pred CCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECC-CCCCCCcccEEEE
Confidence 25999999964 47999999999998874 556666 3
Q ss_pred CCCeEEeecccCCccccCCeeecCCCCeeEEEecCC
Q 040529 673 TDPKALASRTYQGLSFAGPRMEDGHNCTWWMVDIGQ 708 (806)
Q Consensus 673 ~~~~~~v~~g~~g~~~~~~~~y~~~~nsW~~vd~~~ 708 (806)
.++++|++||.++.. ...++|||.+|+|..++..+
T Consensus 361 ~~g~IYviGG~~~~~-~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 361 INNVIYVIGGHSETD-TTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred ECCEEEEecCcCCCC-ccEEEEeCCCCEEEeCCCCC
Confidence 467899999986542 45678999999999987655
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=388.87 Aligned_cols=324 Identities=16% Similarity=0.242 Sum_probs=261.2
Q ss_pred CCCceeEEEEE--cCeeeEEEeeHHHHhcCCHHHHHhhcCCCCCCCcceEEeCCCCHHHHHHHHhHHhcCccccCCCCch
Q 040529 344 NCEYADVNIYV--ESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHLRDVSLKAFKIMLEFMYSGELNIEDSLDF 421 (806)
Q Consensus 344 ~~~~sDV~l~v--~~~~~~~~aHr~ILaa~S~yF~~mf~~~~~Es~~~~I~l~~v~~~~f~~lL~fiYtg~l~i~~~~n~ 421 (806)
++.+|||+|.+ +|+ +|+|||.||+++|+||++||+++|+ +.+|.|++ ++++|+.+|+|||||++.++. +|
T Consensus 6 ~~~~~Dv~l~~~~~~~--~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~-~~- 77 (534)
T PHA03098 6 LQKFCDESIIIVNGGG--IIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITS-NN- 77 (534)
T ss_pred cCCCCCEEEEEEcCCE--EEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcH-HH-
Confidence 88999999998 665 4999999999999999999999988 57899999 999999999999999999886 55
Q ss_pred hHHHHHHHHHHHhhCchHHHHHHHHHHhhcCCCCCcHHHHHHHhhhcCCHHHHHHHHHHHHhchhhhhccccccccCCHH
Q 040529 422 GSLLLQLLILSDQFGVTLLHQECCKLLLECFSEDSVCPILQVVTPISSCKLIEETCERKFALHFDYCTTASLDFVFLDEA 501 (806)
Q Consensus 422 ~~~v~~Ll~~A~~l~l~~L~~~c~~~L~~~l~~~n~~~~l~~~a~~~~~~~L~~~~~~~I~~nf~~l~~~~~~F~~L~~~ 501 (806)
+.+||.+|++|+++.|++.|+++|.+.++.+| |+.++.+|..|++.+|.+.|.+||+.||.++ .++++|.+|+.+
T Consensus 78 ---~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~n-c~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v-~~~~~f~~l~~~ 152 (534)
T PHA03098 78 ---VKDILSIANYLIIDFLINLCINYIIKIIDDNN-CIDIYRFSFFYGCKKLYSAAYNYIRNNIELI-YNDPDFIYLSKN 152 (534)
T ss_pred ---HHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhH-HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH-hcCchhhcCCHH
Confidence 99999999999999999999999999999999 9999999999999999999999999999999 899999999999
Q ss_pred HHHhhccCCCCCCCCHHHHHHHHHHHHhccccccCcchhhHHHhhcCchhhHHHHHHhHhhccccccccccChHHHhhcc
Q 040529 502 TFSSIIRHPDLTVTSEERVLNAILMWGMKAKELCGWEEMDELIIKLTPELVFEERLQSVNYLLPFVRFPLLPHALLKKME 581 (806)
Q Consensus 502 ~l~~IL~sd~L~V~sE~~v~~avl~Wi~~~~~~~~w~~~~~~l~~~~p~~~~~~r~~~l~~Ll~~IRf~lls~~~L~~v~ 581 (806)
.+..||+++.|+|.+|++||+++++|++++. ++|.+++.+||++|||++|++++|..+.
T Consensus 153 ~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~---------------------~~r~~~~~~ll~~vR~~~~~~~~l~~~~ 211 (534)
T PHA03098 153 ELIKILSDDKLNVSSEDVVLEIIIKWLTSKK---------------------NNKYKDICLILKVLRITFLSEEGIKKLK 211 (534)
T ss_pred HHHHHhcCCCcCcCCHHHHHHHHHHHHhcCh---------------------hhhHhHHHHHHhhccccccCHHHHHHHH
Confidence 9999999999999999999999999999985 6788999999999999999999987754
Q ss_pred -------cccccccchhHHHHHHHHHHHHhcCCCCCCC----C------------------Cccc--cccccc-ccccce
Q 040529 582 -------NSCLNRQIPIFDNLVKEAIIFIESGLAVPGS----N------------------QSVR--FQHRRS-SFKELQ 629 (806)
Q Consensus 582 -------~~~l~~~~~~~~~~l~ea~~~~~~~~~~~~~----~------------------~~~r--~~~r~~-~~~e~i 629 (806)
..+++ ..+.|..++.++..+.......... + ...+ ..+... ...-..
T Consensus 212 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (534)
T PHA03098 212 RWKLRIKKKKIV-FNKRCIKIIYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHYVYCFGS 290 (534)
T ss_pred HHHhhcCCccee-ccccchHHHHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchhhhhcccccCccccccceE
Confidence 34455 6677888888877653211000000 0 0000 000000 000001
Q ss_pred eeecCCCCceEEEecccC------CceeEecCCCCcEEEeccCCCCCcC------CCCeEEeecccCCcc-ccCCeeecC
Q 040529 630 YICDGDSNGVLYFAGTSY------GEHPWVNPVLAKRINITASSPISRY------TDPKALASRTYQGLS-FAGPRMEDG 696 (806)
Q Consensus 630 ~~~gG~~~gvlY~iGg~~------~sve~ynP~~~~w~~vt~s~~~~r~------~~~~~~v~~g~~g~~-~~~~~~y~~ 696 (806)
.++ ++.+|++||.. ..+.+|||.+++|..++ +++.+|. .++++|+.||+.+.. ....+.||+
T Consensus 291 ~~~----~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~ 365 (534)
T PHA03098 291 VVL----NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP-ELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKP 365 (534)
T ss_pred EEE----CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECC-CCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcC
Confidence 111 24788888753 26889999999998774 4555663 457889999976432 345677999
Q ss_pred CCCeeEEEecC
Q 040529 697 HNCTWWMVDIG 707 (806)
Q Consensus 697 ~~nsW~~vd~~ 707 (806)
.+++|..++..
T Consensus 366 ~~~~W~~~~~l 376 (534)
T PHA03098 366 GESKWREEPPL 376 (534)
T ss_pred CCCceeeCCCc
Confidence 99999987643
No 5
>KOG4276 consensus Predicted hormone receptor interactor [General function prediction only]
Probab=99.97 E-value=1.5e-31 Score=221.62 Aligned_cols=110 Identities=41% Similarity=0.835 Sum_probs=101.6
Q ss_pred ecCCCCeeEEEecCCceeeEeeeeEeeec--CCcccceEEEEEEecCCCCeEeeEEeecCcccccCCccceeeecCCCCC
Q 040529 694 EDGHNCTWWMVDIGQDHQLMCNYYTLRMD--GSRAYIRYWNFQGSMDGKSWTNLRVHENDQTMCKHGQFASWAVIGPNAL 771 (806)
Q Consensus 694 y~~~~nsW~~vd~~~~~~~~p~~Y~~r~~--~~~~~lr~W~~~gs~dg~~W~~l~~~~~~~~l~~~~~~~~~~i~~~~~~ 771 (806)
++..+|+|+.||+|. .++|+.|++|++ ++++++|+|++|||+||++|+.|..|++|.+||+||++++|||+.++..
T Consensus 2 t~d~k~awf~iDLG~--~vip~~y~lrh~rgygRsalRnW~fQgS~DgktWt~l~vH~DD~sl~epGstAtWpi~~a~~~ 79 (113)
T KOG4276|consen 2 TDDDKNAWFAIDLGL--EVIPTAYTLRHARGYGRSALRNWKFQGSKDGKTWTDLRVHVDDKSLCEPGSTATWPITAANDL 79 (113)
T ss_pred CCCCcceeEEEecCc--eEeeeeeeeeecccccHHHhhheeeeccccCCcceeEEEEeccccccCCCccccccccCcccc
Confidence 467799999999999 689999999996 7779999999999999999999999999999999999999999988877
Q ss_pred cCeEEEEEEEeccCCCCCCCceEEEeceEEeeecC
Q 040529 772 RPFRFFRVVLMGPTADAANSWNFCICFLELYGYFH 806 (806)
Q Consensus 772 ~~~r~fri~q~g~n~~~~~~~~l~l~~~e~~G~~~ 806 (806)
.|||||||.|+|+|++|++ +++++++||+||+++
T Consensus 80 ~~fRffRi~q~G~nasgqT-hylscsgfElYG~v~ 113 (113)
T KOG4276|consen 80 LPFRFFRIVQNGKNASGQT-HYLSCSGFELYGYVV 113 (113)
T ss_pred cceEEEEEEecCCCCCCcc-ceeEeeeEEEEEEeC
Confidence 7999999999999999998 466667799999985
No 6
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.97 E-value=3.1e-30 Score=266.27 Aligned_cols=367 Identities=21% Similarity=0.322 Sum_probs=269.7
Q ss_pred HHHHHhhhcCCCceeEEEEEcCeeeEEEeeHHHHhcCCHHHHHhhcCCCCCCCcceEEeCCCCHHHHHHHHhHHhcCccc
Q 040529 335 SQRLKQLASNCEYADVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHLRDVSLKAFKIMLEFMYSGELN 414 (806)
Q Consensus 335 l~~l~~l~~~~~~sDV~l~v~~~~~~~~aHr~ILaa~S~yF~~mf~~~~~Es~~~~I~l~~v~~~~f~~lL~fiYtg~l~ 414 (806)
.+.+.+++.+..++||++++++.. |+|||+|||+||.|||+|+.++|.|+.+..|.|++...++|+.+|+|||||++.
T Consensus 32 S~~~~~l~~~e~y~DVtfvve~~r--fpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~ 109 (620)
T KOG4350|consen 32 SQSFDELFTSEDYSDVTFVVEDTR--FPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKID 109 (620)
T ss_pred hHHHHHHhhcCcccceEEEEeccc--cchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhccee
Confidence 477899999999999999999964 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHhhCchHHHHHHHHHHhhcCCCCCcHHHHHHHhhhcCCHHHHHHHHHHHHhchhhhhccccc
Q 040529 415 IEDSLDFGSLLLQLLILSDQFGVTLLHQECCKLLLECFSEDSVCPILQVVTPISSCKLIEETCERKFALHFDYCTTASLD 494 (806)
Q Consensus 415 i~~~~n~~~~v~~Ll~~A~~l~l~~L~~~c~~~L~~~l~~~n~~~~l~~~a~~~~~~~L~~~~~~~I~~nf~~l~~~~~~ 494 (806)
+...+. +.+++.|.+|.+|+.+.|..+..+||.+.+..+|+|..+ .+|..|++.+|...|..|+-+|..++ ...+.
T Consensus 110 l~~~~e--d~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmif-daA~ly~l~~Lt~~C~mfmDrnA~~l-L~~~s 185 (620)
T KOG4350|consen 110 LAGVEE--DILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIF-DAAYLYQLTDLTDYCMMFMDRNADQL-LEDPS 185 (620)
T ss_pred cccchH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeee-eHHHHhcchHHHHHHHHHHhcCHHhh-hcCcc
Confidence 986543 569999999999999999999999999999999977665 56788999999999999999999999 89999
Q ss_pred cccCCHHHHHhhccCCCCCCCCHHHHHHHHHHHHhccccccCcchhhHHHhhcCchhhHHHHHHhHhhccccccccccCh
Q 040529 495 FVFLDEATFSSIIRHPDLTVTSEERVLNAILMWGMKAKELCGWEEMDELIIKLTPELVFEERLQSVNYLLPFVRFPLLPH 574 (806)
Q Consensus 495 F~~L~~~~l~~IL~sd~L~V~sE~~v~~avl~Wi~~~~~~~~w~~~~~~l~~~~p~~~~~~r~~~l~~Ll~~IRf~lls~ 574 (806)
|..|+.+.|.++|..|..- .-|.++|.|+.+|.++|. ....+.+++.||+|+|+.
T Consensus 186 Fn~LSk~sL~e~l~RDsFf-ApE~~IFlAv~~W~~~Ns------------------------ke~~k~~~~~VRLPLm~l 240 (620)
T KOG4350|consen 186 FNRLSKDSLKELLARDSFF-APELKIFLAVRSWHQNNS------------------------KEASKVLLELVRLPLMTL 240 (620)
T ss_pred hhhhhHHHHHHHHhhhccc-chHHHHHHHHHHHHhcCc------------------------hhhHHHHHHHHhhhhccH
Confidence 9999999999999999886 469999999999999873 235567899999999999
Q ss_pred HH-HhhcccccccccchhHHHHHHHHHHHHhcCCCCCCCCCcccccccccccccceeeecCCCCceEEEecccCCceeEe
Q 040529 575 AL-LKKMENSCLNRQIPIFDNLVKEAIIFIESGLAVPGSNQSVRFQHRRSSFKELQYICDGDSNGVLYFAGTSYGEHPWV 653 (806)
Q Consensus 575 ~~-L~~v~~~~l~~~~~~~~~~l~ea~~~~~~~~~~~~~~~~~r~~~r~~~~~e~i~~~gG~~~gvlY~iGg~~~sve~y 653 (806)
.. |+.+..++++. -+.+.+|+.-+..... ..|.+...
T Consensus 241 teLLnvVRPsGlls-----pD~iLDAI~vrs~s~~---------~lpyRg~l---------------------------- 278 (620)
T KOG4350|consen 241 TELLNVVRPSGLLS-----PDTILDAIEVRSQSPH---------ELPYRGCL---------------------------- 278 (620)
T ss_pred HHHHhccCcccCcC-----HHHHHHHHHhhccCcc---------cCCccccc----------------------------
Confidence 85 56688888876 4556667764432110 11111000
Q ss_pred cCCCCcEEEeccCCCCCcC---------CCCeE--E-eecccCCccccCCeeecCCCCeeEEEecCCceeeEeeeeEeee
Q 040529 654 NPVLAKRINITASSPISRY---------TDPKA--L-ASRTYQGLSFAGPRMEDGHNCTWWMVDIGQDHQLMCNYYTLRM 721 (806)
Q Consensus 654 nP~~~~w~~vt~s~~~~r~---------~~~~~--~-v~~g~~g~~~~~~~~y~~~~nsW~~vd~~~~~~~~p~~Y~~r~ 721 (806)
-|..| +++.-+.++. .+|.+ | ...||. .-+.+.+..+=+.|++|.- . +-|. ||.
T Consensus 279 ~peeN----ia~~~~~aq~~~ge~r~alldgd~~~ydl~~gys------Rh~i~D~~~sgi~i~LG~p-~-iINh--Irm 344 (620)
T KOG4350|consen 279 SPEEN----IAPHYPHAQPLSGECRDALLDGDVTTYDLSNGYS------RHCINDENISGIQIDLGKP-F-IINH--IRM 344 (620)
T ss_pred Cchhc----ccccccccccccchhhhhhccCCcceeecccCcc------ccccCcccceeEEEecCCc-h-hhhh--hhh
Confidence 01111 0011011110 11111 1 112221 1235667888899999874 1 1121 222
Q ss_pred c--CCcccceEEEEEEecCCCCeEeeEEeecCcccccCCccceeeecCCCCCcCeEEEEEEEeccCCCCCCCceEEEece
Q 040529 722 D--GSRAYIRYWNFQGSMDGKSWTNLRVHENDQTMCKHGQFASWAVIGPNALRPFRFFRVVLMGPTADAANSWNFCICFL 799 (806)
Q Consensus 722 ~--~~~~~lr~W~~~gs~dg~~W~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~~~r~fri~q~g~n~~~~~~~~l~l~~~ 799 (806)
- .....-.++-++-|+|...|.-+..+. .-.|..-+.-.|+ ..+-||+||+-| |..-+ ..|.+.+|
T Consensus 345 llWdrdsraysY~veVSmD~~hW~rV~DyS--~Y~CRswQ~LyF~------arvvR~Irlvgt--~Ntvn--~~fh~v~~ 412 (620)
T KOG4350|consen 345 LLWDRDSRAYSYQVEVSMDDAHWNRVADYS--EYDCRSWQRLYFT------ARVVRHIRLVGT--NNTVN--CKFHGVRI 412 (620)
T ss_pred hhhcccccceEEEEEEecchhhhHHhhhhh--hhccccceeeeee------cceeEEEEEEee--cccee--eEEEEEEE
Confidence 2 122345688899999999998654321 1233333333443 348999999876 33333 35777777
Q ss_pred E
Q 040529 800 E 800 (806)
Q Consensus 800 e 800 (806)
|
T Consensus 413 E 413 (620)
T KOG4350|consen 413 E 413 (620)
T ss_pred E
Confidence 6
No 7
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=99.95 E-value=2e-28 Score=219.07 Aligned_cols=98 Identities=35% Similarity=0.748 Sum_probs=90.3
Q ss_pred EEEEecCCCCcccccccCCCCcEEEEEcccCcceeEEEEC--CeEEEeccCCcccCccccceeeEEEeCCEEEEeccc--
Q 040529 44 TVVFRENVGSQHYHYKRDNSPHYTVIIGSNRNRRLKIEVN--GKTVVDVAGVGLCCSSAFQSYWISIYDGLISIGKGR-- 119 (806)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~n~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-- 119 (806)
||+|+++ +|..|+++|||||||||+|++++|+|+ ++.++.+.+++|||+.||+.|||+|+||.|.||+|.
T Consensus 1 HI~Ls~~------~~~~d~~~~YeIviGg~~Nt~s~Irr~~~~~~~~~~~t~~ils~~e~~~fwI~~~~G~I~vg~~g~~ 74 (102)
T PF12248_consen 1 HIALSSS------HYPYDNDPMYEIVIGGWGNTKSVIRRQKRGPDLVSVSTPGILSPSEFRMFWISWRDGTIRVGRGGED 74 (102)
T ss_pred CEeecCc------cCCCCCCceEEEEEecCCCceEEEEEccCCccEEEecCCCcCCCCccEEEEEEECCCEEEEEECCCc
Confidence 8999776 344488999999999999999999998 888999999999999999999999999999999954
Q ss_pred CCCcceeEEEeCCCCCcceeEEEeecccccccc
Q 040529 120 YPFQNLVFQWLDSSPNCSVRYVGLSSWDKHVGY 152 (806)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gy 152 (806)
.|| |+|.||+| ++|+|||||+||.++.|
T Consensus 75 ~pf----l~~~Dp~~-~~v~yvGft~w~~~~~~ 102 (102)
T PF12248_consen 75 EPF----LEWTDPEP-IPVNYVGFTGWGSPGVW 102 (102)
T ss_pred cEE----EEEECCCC-CcccEEEEecCCCceEC
Confidence 577 99999998 99999999999999876
No 8
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.95 E-value=7.3e-28 Score=278.68 Aligned_cols=117 Identities=26% Similarity=0.375 Sum_probs=108.3
Q ss_pred ccccchhhHHHHHHHHHhCCCCccEEEEecCCCeEEEeeeeeecccCcccC-------CCCCCceEEeCCCCHHHHHHHH
Q 040529 187 MIDERTGYEKWGLENFFESWELSDMFFIVGTEEKLVPAHKVILQASGNFPL-------SLTGEGIVQLQEVIYPILHALL 259 (806)
Q Consensus 187 ~~~~~~~~~~~~l~~l~~~~~~sDv~~~v~~~~~~~~aHk~ILaarS~~F~-------~~~~~~~i~l~~v~~~~f~~lL 259 (806)
....|...+++.|+.+++.+.+|||++.++ +++|+|||.||||+||||+ +|..+.+|+|.+++++++..++
T Consensus 15 ~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~--~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll 92 (571)
T KOG4441|consen 15 TDPSHSKFLLQGLNELREEGLLCDVTLLVG--DREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLL 92 (571)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCceEEEEEC--CeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHH
Confidence 356778889999999999999999999997 5999999999999999993 4678899999999999999999
Q ss_pred HhhccCcccCCCCCchhHHHhhhhccchhhHHHHHHHHH-hhhcccc
Q 040529 260 QFIYTGRTQISEPLLGPLWALSSQFQVMPLVKQCEETME-RFKLNKK 305 (806)
Q Consensus 260 ~fiYtg~~~i~~~~~~~ll~~A~~~~l~~L~~~C~~~l~-~~~l~~~ 305 (806)
+|+|||.+.++.+++++|+.+|+.||++.+.+.|.+||+ +++.+|+
T Consensus 93 ~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nc 139 (571)
T KOG4441|consen 93 DYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNC 139 (571)
T ss_pred HHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999999999999999999997 6666666
No 9
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=5.5e-27 Score=259.68 Aligned_cols=275 Identities=21% Similarity=0.265 Sum_probs=196.6
Q ss_pred HHHHHHHHHhCCCCccEEEEecCCCeEEEeeeeeecccCcccCCC-------------------CCCceEEeCCCCHHHH
Q 040529 195 EKWGLENFFESWELSDMFFIVGTEEKLVPAHKVILQASGNFPLSL-------------------TGEGIVQLQEVIYPIL 255 (806)
Q Consensus 195 ~~~~l~~l~~~~~~sDv~~~v~~~~~~~~aHk~ILaarS~~F~~~-------------------~~~~~i~l~~v~~~~f 255 (806)
+..-|.+--....+.||+|.|| ++.|+|||+||++||+||++. .....|.++++.|..|
T Consensus 545 f~kLl~e~~~~ds~hDVtf~vg--~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mf 622 (1267)
T KOG0783|consen 545 FPKLLSEENYKDSFHDVTFYVG--TSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMF 622 (1267)
T ss_pred hHHHhhccccccccceEEEEec--CeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHH
Confidence 3344444455678899999997 789999999999999998431 2234566789999999
Q ss_pred HHHHHhhccCcccC--CCCC------------chh-------HHHhhhhccchhhHHHHHHHHHhhhccccccccccccc
Q 040529 256 HALLQFIYTGRTQI--SEPL------------LGP-------LWALSSQFQVMPLVKQCEETMERFKLNKKLFDLGKNVE 314 (806)
Q Consensus 256 ~~lL~fiYtg~~~i--~~~~------------~~~-------ll~~A~~~~l~~L~~~C~~~l~~~~l~~~~~~~~~~v~ 314 (806)
+.+|+||||+..-- .++. ..+ ++.++.+|++..|......+....
T Consensus 623 e~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s~~~~~-------------- 688 (1267)
T KOG0783|consen 623 EILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVSRQPLL-------------- 688 (1267)
T ss_pred HHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhhccchh--------------
Confidence 99999999995422 2222 222 333333333333322211111100
Q ss_pred ccCCCCCCccccCCCCcchHHHHHHh---hhcCCCceeEEEEEcCeeeEEEeeHHHHhcCCHHHHHhhcCCCCCCCcceE
Q 040529 315 LSYPSSRPHCTVFPFGLPINSQRLKQ---LASNCEYADVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYSSDV 391 (806)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~l~~l~~---l~~~~~~sDV~l~v~~~~~~~~aHr~ILaa~S~yF~~mf~~~~~Es~~~~I 391 (806)
.++.. +.+.+.. +-+....-|+.|.+.|++ +++|||++|++|++||..||..-|.|+..-.+
T Consensus 689 -----------~~~n~---ia~~~~N~l~lsdh~e~~d~~i~~KDGk-vl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~ 753 (1267)
T KOG0783|consen 689 -----------SLTND---IAQLYNNFLVLSDHEETMDTVIKLKDGK-VLKAHKCFLSARLEYFSSMFQFVWMESSSITV 753 (1267)
T ss_pred -----------hcccH---HHHHhcCeeEecCCccceeEEEEecCCc-CcccceeEeeeHHHHHHHHHHHHHhhhcccee
Confidence 11111 1222222 222245557777776664 59999999999999999999999999887666
Q ss_pred EeCCCCHHHHHHHHhHHh-cCccccCCCCchhHHHHHHHHHHHhhCchHHHHHHHHHHhhcCCCCCcHHHHHHHhhhcCC
Q 040529 392 HLRDVSLKAFKIMLEFMY-SGELNIEDSLDFGSLLLQLLILSDQFGVTLLHQECCKLLLECFSEDSVCPILQVVTPISSC 470 (806)
Q Consensus 392 ~l~~v~~~~f~~lL~fiY-tg~l~i~~~~n~~~~v~~Ll~~A~~l~l~~L~~~c~~~L~~~l~~~n~~~~l~~~a~~~~~ 470 (806)
.+..+..+.|+.+|+|+| +++..+-.+....+++.+++.+||.|.+.+|+..|+..|.+.++..+ |..++.+|.+|++
T Consensus 754 ~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~-~~~llefaamY~a 832 (1267)
T KOG0783|consen 754 NLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKT-LPTLLEFAAMYHA 832 (1267)
T ss_pred ecCcchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccc-hHHHHHHHHHhhH
Confidence 666677999999999999 55555433233346799999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHhchhhhhccccccccCCHHH
Q 040529 471 KLIEETCERKFALHFDYCTTASLDFVFLDEAT 502 (806)
Q Consensus 471 ~~L~~~~~~~I~~nf~~l~~~~~~F~~L~~~~ 502 (806)
++|+..|++||+.|...+ .......+++...
T Consensus 833 k~L~~~C~dfic~N~~~~-Learsi~~~dg~~ 863 (1267)
T KOG0783|consen 833 KELYSRCIDFICHNIEFF-LEARSISEWDGFH 863 (1267)
T ss_pred HHHHHHHHHHHHHhHHHH-HHhccHhhhcchH
Confidence 999999999999999877 4544444444333
No 10
>PHA02713 hypothetical protein; Provisional
Probab=99.93 E-value=5.7e-26 Score=264.03 Aligned_cols=116 Identities=18% Similarity=0.227 Sum_probs=103.7
Q ss_pred cccchhhHHHHHHHHHhCCCCccEEEEecCCCeEEEeeeeeecccCcccCC-------CC-CCceEEeCCCCHHHHHHHH
Q 040529 188 IDERTGYEKWGLENFFESWELSDMFFIVGTEEKLVPAHKVILQASGNFPLS-------LT-GEGIVQLQEVIYPILHALL 259 (806)
Q Consensus 188 ~~~~~~~~~~~l~~l~~~~~~sDv~~~v~~~~~~~~aHk~ILaarS~~F~~-------~~-~~~~i~l~~v~~~~f~~lL 259 (806)
+..|...+++.|++|+.++.+|||+|.|+ +|+.|+|||+||||+|+||+. |. .+.+|+|+++++++|+.+|
T Consensus 5 ~~~h~~~~l~~l~~lr~~~~l~DV~L~v~-~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll 83 (557)
T PHA02713 5 DIKHNRRVVSNISNLLDDDILCDVIITIG-DGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIV 83 (557)
T ss_pred hhhhhHHHHHHHHHHHhCCCCCCEEEEeC-CCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHH
Confidence 35677889999999999999999999996 378999999999999999943 33 3678999999999999999
Q ss_pred HhhccCcccCCCCCchhHHHhhhhccchhhHHHHHHHHH-hhhccccc
Q 040529 260 QFIYTGRTQISEPLLGPLWALSSQFQVMPLVKQCEETME-RFKLNKKL 306 (806)
Q Consensus 260 ~fiYtg~~~i~~~~~~~ll~~A~~~~l~~L~~~C~~~l~-~~~l~~~~ 306 (806)
+|+|||. ++.+++++||.+|++||++.|++.|++||. .++.+|++
T Consensus 84 ~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl 129 (557)
T PHA02713 84 QYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCI 129 (557)
T ss_pred HHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchH
Confidence 9999997 689999999999999999999999999997 67766664
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=99.89 E-value=3.1e-22 Score=229.61 Aligned_cols=105 Identities=12% Similarity=0.097 Sum_probs=92.7
Q ss_pred HHHHHHHhCCCCccEEEEecCCCeEEEeeeeeecccCcccCC-------CCCCceEEe--CCCCHHHHHHHHHhhccCcc
Q 040529 197 WGLENFFESWELSDMFFIVGTEEKLVPAHKVILQASGNFPLS-------LTGEGIVQL--QEVIYPILHALLQFIYTGRT 267 (806)
Q Consensus 197 ~~l~~l~~~~~~sDv~~~v~~~~~~~~aHk~ILaarS~~F~~-------~~~~~~i~l--~~v~~~~f~~lL~fiYtg~~ 267 (806)
+.+-.|+..+.+|||++.+ |++|+|||+||||+||||+. |+. .+|.+ .++++++|+.+|+|+|||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~---~~~~~~HR~VLAa~S~YFraMF~~~~~Es~-~~v~~~~~~v~~~~l~~lldy~YTg~l 86 (480)
T PHA02790 11 KNILALSMTKKFKTIIEAI---GGNIIVNSTILKKLSPYFRTHLRQKYTKNK-DPVTRVCLDLDIHSLTSIVIYSYTGKV 86 (480)
T ss_pred hhHHHHHhhhhhceEEEEc---CcEEeeehhhhhhcCHHHHHHhcCCccccc-cceEEEecCcCHHHHHHHHHhheeeeE
Confidence 5677899999999999998 47999999999999999943 343 34555 48999999999999999999
Q ss_pred cCCCCCchhHHHhhhhccchhhHHHHHHHHH-hhhcccc
Q 040529 268 QISEPLLGPLWALSSQFQVMPLVKQCEETME-RFKLNKK 305 (806)
Q Consensus 268 ~i~~~~~~~ll~~A~~~~l~~L~~~C~~~l~-~~~l~~~ 305 (806)
.++.++++++|.+|++||++.+++.|++||. +++++|+
T Consensus 87 ~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NC 125 (480)
T PHA02790 87 YIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYC 125 (480)
T ss_pred EEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchH
Confidence 9999999999999999999999999999997 5665555
No 12
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.89 E-value=2.5e-22 Score=213.80 Aligned_cols=238 Identities=23% Similarity=0.326 Sum_probs=212.6
Q ss_pred HHHHHHhhhcCCCceeEEEEEcC---eeeEEEeeHHHHhcCCHHHHHhhcCCCCCCCcceEEeCCCCHHHHHHHHhHHhc
Q 040529 334 NSQRLKQLASNCEYADVNIYVES---HGLVAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHLRDVSLKAFKIMLEFMYS 410 (806)
Q Consensus 334 ~l~~l~~l~~~~~~sDV~l~v~~---~~~~~~aHr~ILaa~S~yF~~mf~~~~~Es~~~~I~l~~v~~~~f~~lL~fiYt 410 (806)
.......++++...+|+.+++++ ..+.++|||.|||..|+.|.+||.+++.++...+|.++++.+.+|..+|+|||+
T Consensus 101 ~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYs 180 (521)
T KOG2075|consen 101 MRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYS 180 (521)
T ss_pred HHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhc
Confidence 45677889999999999999984 345699999999999999999999999999889999999999999999999999
Q ss_pred CccccCCCCchhHHHHHHHHHHHhhCchHHHHHHHHHHhhcCCCCCcHHHHHHHhhhcCCHHHHHHHHHHHHhchhhhhc
Q 040529 411 GELNIEDSLDFGSLLLQLLILSDQFGVTLLHQECCKLLLECFSEDSVCPILQVVTPISSCKLIEETCERKFALHFDYCTT 490 (806)
Q Consensus 411 g~l~i~~~~n~~~~v~~Ll~~A~~l~l~~L~~~c~~~L~~~l~~~n~~~~l~~~a~~~~~~~L~~~~~~~I~~nf~~l~~ 490 (806)
+.+.+.. ++ ++.+|.+|++|.++.|.+.|.++|...+-..|.|..+...|..++-++|...|++-|..+|... .
T Consensus 181 dev~~~~-dt----vi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~a-l 254 (521)
T KOG2075|consen 181 DEVKLAA-DT----VITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDA-L 254 (521)
T ss_pred chhhhhH-HH----HHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhh-h
Confidence 9999876 55 9999999999999999999999999999999999999988999999999999999999999998 8
Q ss_pred cccccccCC--HHHHHhhccCCCCCCCCHHHHHHHHHHHHhccccccCcchhhHHHhhcCchhhHHHHHHhHhhcccccc
Q 040529 491 ASLDFVFLD--EATFSSIIRHPDLTVTSEERVLNAILMWGMKAKELCGWEEMDELIIKLTPELVFEERLQSVNYLLPFVR 568 (806)
Q Consensus 491 ~~~~F~~L~--~~~l~~IL~sd~L~V~sE~~v~~avl~Wi~~~~~~~~w~~~~~~l~~~~p~~~~~~r~~~l~~Ll~~IR 568 (806)
..+.|.+.+ .+.++++|.++.|.+. |..+|+|+++|++..+++++-+. ++ +.+.+.+...+..||
T Consensus 255 ~~EGf~did~~~dt~~evl~r~~l~~~-e~~lfeA~lkw~~~e~~rs~~~~--------~~----~~~~~vl~~~l~lir 321 (521)
T KOG2075|consen 255 TPEGFCDIDSTRDTYEEVLRRDTLEAR-EFRLFEAALKWAEAECQRSGGPV--------NG----QNKRKVLGRALSLIR 321 (521)
T ss_pred CccceeehhhHHHHHHHHHhhcccchh-HHHHHHHHHhhccCcchhhcCCC--------Cc----cchhhhhhheeeeec
Confidence 999999998 9999999999999985 99999999999988664444332 22 677789999999999
Q ss_pred ccccChHHHh-hcccccccccch
Q 040529 569 FPLLPHALLK-KMENSCLNRQIP 590 (806)
Q Consensus 569 f~lls~~~L~-~v~~~~l~~~~~ 590 (806)
||+|..+.+. .+...++....+
T Consensus 322 fp~m~~Eefa~~~e~sgIl~d~e 344 (521)
T KOG2075|consen 322 FPFMNIEEFARGVEQSGILTDRE 344 (521)
T ss_pred ccccchhhhccCccccCCccccc
Confidence 9999999765 577777766544
No 13
>PHA03098 kelch-like protein; Provisional
Probab=99.86 E-value=1.4e-20 Score=220.01 Aligned_cols=95 Identities=19% Similarity=0.358 Sum_probs=86.2
Q ss_pred hCCCCccEEEEecCCCeEEEeeeeeecccCcccCCC----CCCceEEeCCCCHHHHHHHHHhhccCcccCCCCCchhHHH
Q 040529 204 ESWELSDMFFIVGTEEKLVPAHKVILQASGNFPLSL----TGEGIVQLQEVIYPILHALLQFIYTGRTQISEPLLGPLWA 279 (806)
Q Consensus 204 ~~~~~sDv~~~v~~~~~~~~aHk~ILaarS~~F~~~----~~~~~i~l~~v~~~~f~~lL~fiYtg~~~i~~~~~~~ll~ 279 (806)
.++.+|||+|.+..+|++|+|||+||||+|+||+.+ ..+.+|+|++ ++++|+.+|+|||||++.++.+++.+|+.
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~ 83 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDILS 83 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCCCceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHHH
Confidence 389999999998444899999999999999999543 1257899999 99999999999999999999999999999
Q ss_pred hhhhccchhhHHHHHHHHHh
Q 040529 280 LSSQFQVMPLVKQCEETMER 299 (806)
Q Consensus 280 ~A~~~~l~~L~~~C~~~l~~ 299 (806)
+|++|+++.|++.|++||.+
T Consensus 84 ~A~~l~~~~l~~~C~~~l~~ 103 (534)
T PHA03098 84 IANYLIIDFLINLCINYIIK 103 (534)
T ss_pred HHHHhCcHHHHHHHHHHHHH
Confidence 99999999999999999973
No 14
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.72 E-value=1.3e-17 Score=158.18 Aligned_cols=172 Identities=20% Similarity=0.311 Sum_probs=149.2
Q ss_pred chHHHHHHhhhcCCCceeEEEEEcCee-eEEEeeHHHHhcCCHHHHHhhcCCCCCCCcceEEeCCCCHHHHHHHHhHHhc
Q 040529 332 PINSQRLKQLASNCEYADVNIYVESHG-LVAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHLRDVSLKAFKIMLEFMYS 410 (806)
Q Consensus 332 ~~~l~~l~~l~~~~~~sDV~l~v~~~~-~~~~aHr~ILaa~S~yF~~mf~~~~~Es~~~~I~l~~v~~~~f~~lL~fiYt 410 (806)
..++.-...+++...|+|++|.++|.. ..++|||.|||+||++++ |.++- ..+..+..+.+.++++|...++||||
T Consensus 51 SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~-dekse~~~~dDad~Ea~~t~iRWIYT 127 (280)
T KOG4591|consen 51 SRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGG-DEKSEELDLDDADFEAFHTAIRWIYT 127 (280)
T ss_pred HHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCC-CcchhhhcccccCHHHHHHhheeeec
Confidence 344566678899999999999998432 249999999999999886 33322 22345677889999999999999999
Q ss_pred CccccCCCCchhHHHHHHHHHHHhhCchHHHHHHHHHHhhcCCCCCcHHHHHHHhhhcCCHHHHHHHHHHHHhchhhhhc
Q 040529 411 GELNIEDSLDFGSLLLQLLILSDQFGVTLLHQECCKLLLECFSEDSVCPILQVVTPISSCKLIEETCERKFALHFDYCTT 490 (806)
Q Consensus 411 g~l~i~~~~n~~~~v~~Ll~~A~~l~l~~L~~~c~~~L~~~l~~~n~~~~l~~~a~~~~~~~L~~~~~~~I~~nf~~l~~ 490 (806)
+++++..++ ..+.++.++|..|+++-|++.|++-+...++.+| |+.++.+|+..++..|...|...|+.+++.+
T Consensus 128 DEidfk~dD---~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~N-CIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL-- 201 (280)
T KOG4591|consen 128 DEIDFKEDD---EFLLELCELANRFQLELLKERCEKGLGALLHVDN-CIKFYEFAEELNARQLMNVAAEIIAGAWDDL-- 201 (280)
T ss_pred cccccccch---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhh-HHHHHHHHHHhhHHHHHHHHHHHHHhhcccc--
Confidence 999998644 3599999999999999999999999999999999 9999999999999999999999999999997
Q ss_pred cccccccCCHHHHHhhccCCCC
Q 040529 491 ASLDFVFLDEATFSSIIRHPDL 512 (806)
Q Consensus 491 ~~~~F~~L~~~~l~~IL~sd~L 512 (806)
...+|.++++..+.+++.+..-
T Consensus 202 ~~a~FaqMs~aLLYklId~kTe 223 (280)
T KOG4591|consen 202 GKADFAQMSAALLYKLIDGKTE 223 (280)
T ss_pred ChHHHHhccHHHHHHHHcCCCc
Confidence 8899999999999999987543
No 15
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.67 E-value=1.6e-16 Score=165.71 Aligned_cols=239 Identities=17% Similarity=0.183 Sum_probs=191.3
Q ss_pred HHhhhcCCCceeEEEEEcCeeeEEEeeHHHHhcCCHHHHHhhcCCCCCCCcceEEeC----CCCHHHHHHHHhHHhcCcc
Q 040529 338 LKQLASNCEYADVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHLR----DVSLKAFKIMLEFMYSGEL 413 (806)
Q Consensus 338 l~~l~~~~~~sDV~l~v~~~~~~~~aHr~ILaa~S~yF~~mf~~~~~Es~~~~I~l~----~v~~~~f~~lL~fiYtg~l 413 (806)
.+.|+.+|.-+||++.+-|.+ .+.||.-|. .|+||.+||.+-++|++...|.|+ .++..+|..++.-+|.+++
T Consensus 60 yq~lf~q~enSDv~l~alg~e--WrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEv 136 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFE--WRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEV 136 (488)
T ss_pred HHHHHhcCCCcceehhhccce--eeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhe
Confidence 456788999999999998875 899999995 799999999999999999877764 5999999999999999999
Q ss_pred ccCCCCchhHHHHHHHHHHHhhCchHHHHHHHHHHhhcCCCCCcHHHHHHHhhhcCCHHHHHHHHHHHHhchhhhhcccc
Q 040529 414 NIEDSLDFGSLLLQLLILSDQFGVTLLHQECCKLLLECFSEDSVCPILQVVTPISSCKLIEETCERKFALHFDYCTTASL 493 (806)
Q Consensus 414 ~i~~~~n~~~~v~~Ll~~A~~l~l~~L~~~c~~~L~~~l~~~n~~~~l~~~a~~~~~~~L~~~~~~~I~~nf~~l~~~~~ 493 (806)
+|.. +. +..++.+|.+++++.|.+.|.+.+.+.++++| +..++.++..|+...+.+.|.+++..|+..+ ....
T Consensus 137 eI~l-~d----v~gvlAaA~~lqldgl~qrC~evMie~lspkt-a~~yYea~ckYgle~vk~kc~ewl~~nl~~i-~~~q 209 (488)
T KOG4682|consen 137 EIKL-SD----VVGVLAAACLLQLDGLIQRCGEVMIETLSPKT-ACGYYEAACKYGLESVKKKCLEWLLNNLMTI-QNVQ 209 (488)
T ss_pred eccH-HH----HHHHHHHHHHHHHhhHHHHHHHHHHHhcChhh-hhHhhhhhhhhhhHHHHHHHHHHHHHhhHhh-hhHH
Confidence 9987 33 99999999999999999999999999999999 7788899999999999999999999999998 6666
Q ss_pred ccccCCHHHHHhhccCCCCCCCC-HHHHHHHHHHHHhccccccCcch-----hhHH---Hh--hcCchh-hHH--HHHHh
Q 040529 494 DFVFLDEATFSSIIRHPDLTVTS-EERVLNAILMWGMKAKELCGWEE-----MDEL---II--KLTPEL-VFE--ERLQS 559 (806)
Q Consensus 494 ~F~~L~~~~l~~IL~sd~L~V~s-E~~v~~avl~Wi~~~~~~~~w~~-----~~~~---l~--~~~p~~-~~~--~r~~~ 559 (806)
-|.+++.+.+..++.|++|-|-+ |..+|..+..|+--... -+|.. +.|. .. ...||. -|- +-..-
T Consensus 210 ~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~WmfLql~-pd~~~~lk~~~~ETdvw~tf~~~~~e~~~fl~t~~g~~ 288 (488)
T KOG4682|consen 210 LLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWMFLQLV-PDWNGSLKQLLTETDVWFTFQRKDFEGMAFLETEIGRP 288 (488)
T ss_pred HHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHHHhhhc-ccccchhccCccccceeEEeeecchhhchhhccccCCc
Confidence 88899999999999999998877 99999999999854210 12221 1110 00 111110 000 01133
Q ss_pred HhhccccccccccChH--HHhhcccccccc
Q 040529 560 VNYLLPFVRFPLLPHA--LLKKMENSCLNR 587 (806)
Q Consensus 560 l~~Ll~~IRf~lls~~--~L~~v~~~~l~~ 587 (806)
+..++.++|+..+... .|+.++...+++
T Consensus 289 y~~vF~~LRlq~it~~~~dlkii~~dniiP 318 (488)
T KOG4682|consen 289 YVSVFRHLRLQYITSDLADLKIIEQDNIIP 318 (488)
T ss_pred hHHHHHHHHHHHHHhccchhhhhhhcCcCc
Confidence 4567888888877664 455666666665
No 16
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.65 E-value=5.9e-16 Score=141.48 Aligned_cols=109 Identities=35% Similarity=0.535 Sum_probs=94.6
Q ss_pred HHhhhcCCCceeEEEEEcCeeeEEEeeHHHHhcCCHHHHHhhcCC-CCCCCcceEEeCCCCHHHHHHHHhHHhcCccccC
Q 040529 338 LKQLASNCEYADVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNG-MSESYSSDVHLRDVSLKAFKIMLEFMYSGELNIE 416 (806)
Q Consensus 338 l~~l~~~~~~sDV~l~v~~~~~~~~aHr~ILaa~S~yF~~mf~~~-~~Es~~~~I~l~~v~~~~f~~lL~fiYtg~l~i~ 416 (806)
|+++++++.++|++|.++++ ..|+|||.||+++|+||++||.+. +.+....++.++++++++|+.+++|+|++++.+.
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~-~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~ 79 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDG-KTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN 79 (111)
T ss_dssp HHHHHHHTTS--EEEEETTT-EEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE
T ss_pred ChHHHcCCCCCCEEEEECCC-EEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCC
Confidence 57889999999999999952 349999999999999999999997 6777767899999999999999999999999987
Q ss_pred CCCchhHHHHHHHHHHHhhCchHHHHHHHHHHhhc
Q 040529 417 DSLDFGSLLLQLLILSDQFGVTLLHQECCKLLLEC 451 (806)
Q Consensus 417 ~~~n~~~~v~~Ll~~A~~l~l~~L~~~c~~~L~~~ 451 (806)
..++ +.+++.+|++|+++.|++.|.++|.++
T Consensus 80 ~~~~----~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDEN----VEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTT----HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 2254 999999999999999999999999864
No 17
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.55 E-value=5.3e-15 Score=135.13 Aligned_cols=100 Identities=30% Similarity=0.460 Sum_probs=87.3
Q ss_pred HHHHHhCCCCccEEEEecCCCeEEEeeeeeecccCcccCCC------CC--CceEEeCCCCHHHHHHHHHhhccCcccCC
Q 040529 199 LENFFESWELSDMFFIVGTEEKLVPAHKVILQASGNFPLSL------TG--EGIVQLQEVIYPILHALLQFIYTGRTQIS 270 (806)
Q Consensus 199 l~~l~~~~~~sDv~~~v~~~~~~~~aHk~ILaarS~~F~~~------~~--~~~i~l~~v~~~~f~~lL~fiYtg~~~i~ 270 (806)
|+++++++.++|++|.+++ ++.|+|||.||+++|+||+.. .. ..+|.++++++++|..+++|+|+|...++
T Consensus 1 ~~~~~~~~~~~D~~i~v~d-~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~ 79 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGD-GKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN 79 (111)
T ss_dssp HHHHHHHTTS--EEEEETT-TEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE
T ss_pred ChHHHcCCCCCCEEEEECC-CEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCC
Confidence 6789999999999999985 799999999999999999431 12 23688899999999999999999999998
Q ss_pred -CCCchhHHHhhhhccchhhHHHHHHHHHh
Q 040529 271 -EPLLGPLWALSSQFQVMPLVKQCEETMER 299 (806)
Q Consensus 271 -~~~~~~ll~~A~~~~l~~L~~~C~~~l~~ 299 (806)
.+++.+++.+|++|+++.|++.|.++|.+
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 99999999999999999999999999864
No 18
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.54 E-value=1.4e-14 Score=143.80 Aligned_cols=222 Identities=18% Similarity=0.194 Sum_probs=147.6
Q ss_pred cchhhHHHHHHHHHhCCCCccEEEEecCCCeEEEeeeeeecccCcccCCC-----CCCc----eEEeCCCCHHHHHHHHH
Q 040529 190 ERTGYEKWGLENFFESWELSDMFFIVGTEEKLVPAHKVILQASGNFPLSL-----TGEG----IVQLQEVIYPILHALLQ 260 (806)
Q Consensus 190 ~~~~~~~~~l~~l~~~~~~sDv~~~v~~~~~~~~aHk~ILaarS~~F~~~-----~~~~----~i~l~~v~~~~f~~lL~ 260 (806)
+...+++.++....+.....|+-+... ...|||||++||+|||+|... .... .|...+++.++|+++|+
T Consensus 112 ~ea~sf~kD~ad~ye~k~c~dldiiFk--eTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh 189 (401)
T KOG2838|consen 112 KEANSFLKDFADGYERKVCGDLDIIFK--ETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLH 189 (401)
T ss_pred cchhHHHHHHhhhhheeeeccceeeee--eccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHH
Confidence 556778999999999999999998884 678999999999999999532 1112 23335889999999999
Q ss_pred hhccCcccCCCCCchhHHHhhhhccchhhHHHHHHHH--HhhhcccccccccccccccCCCCCCccccCCCCcchHHHHH
Q 040529 261 FIYTGRTQISEPLLGPLWALSSQFQVMPLVKQCEETM--ERFKLNKKLFDLGKNVELSYPSSRPHCTVFPFGLPINSQRL 338 (806)
Q Consensus 261 fiYtg~~~i~~~~~~~ll~~A~~~~l~~L~~~C~~~l--~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~l 338 (806)
|+|||+.-...... -..+-|.++|++|= ++++ .++
T Consensus 190 ~l~tgEfgmEd~~f---------qn~diL~QL~edFG~~kkLd----------------------------------~Dm 226 (401)
T KOG2838|consen 190 SLITGEFGMEDLGF---------QNSDILEQLCEDFGCFKKLD----------------------------------EDM 226 (401)
T ss_pred HHHhcccchhhcCC---------chHHHHHHHHHhhCCchhhh----------------------------------HHH
Confidence 99999975443221 11344556666652 2222 223
Q ss_pred HhhhcCCCce-eEEEEEcCee-------------eEEEeeHHHHhcCCHHHHHhhcCCCCCCC---------cceEEeCC
Q 040529 339 KQLASNCEYA-DVNIYVESHG-------------LVAQSHKIILSLWSVPFAKMFTNGMSESY---------SSDVHLRD 395 (806)
Q Consensus 339 ~~l~~~~~~s-DV~l~v~~~~-------------~~~~aHr~ILaa~S~yF~~mf~~~~~Es~---------~~~I~l~~ 395 (806)
+.|++....- |+++.+.|++ .+++||++|.++||++||.++....+|.. ...|.+.+
T Consensus 227 kglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE 306 (401)
T KOG2838|consen 227 KGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE 306 (401)
T ss_pred HHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh
Confidence 3333322222 3333322211 13899999999999999999975444322 23455554
Q ss_pred --CCHHHHHHHHhHHhcCccccCCC-----------------------CchhHHHHHHHHHHHhhCchHHHHHHHHHHhh
Q 040529 396 --VSLKAFKIMLEFMYSGELNIEDS-----------------------LDFGSLLLQLLILSDQFGVTLLHQECCKLLLE 450 (806)
Q Consensus 396 --v~~~~f~~lL~fiYtg~l~i~~~-----------------------~n~~~~v~~Ll~~A~~l~l~~L~~~c~~~L~~ 450 (806)
++..--..++.+|||+.++++-. +.-...+++|+++|.+|.+.-|.+.|+..+..
T Consensus 307 ~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~ 386 (401)
T KOG2838|consen 307 LIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRK 386 (401)
T ss_pred hhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444457899999988765211 00123478889999999999999999998888
Q ss_pred cCCCCC
Q 040529 451 CFSEDS 456 (806)
Q Consensus 451 ~l~~~n 456 (806)
....++
T Consensus 387 acaadl 392 (401)
T KOG2838|consen 387 ACAADL 392 (401)
T ss_pred hhhhhc
Confidence 665554
No 19
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.53 E-value=7.4e-15 Score=132.36 Aligned_cols=100 Identities=29% Similarity=0.444 Sum_probs=90.3
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHhchhhhhccccccccCCHHHHHhhccCCCCCCCCHHHHHHHHHHHHhccccccCc
Q 040529 458 CPILQVVTPISSCKLIEETCERKFALHFDYCTTASLDFVFLDEATFSSIIRHPDLTVTSEERVLNAILMWGMKAKELCGW 537 (806)
Q Consensus 458 ~~~l~~~a~~~~~~~L~~~~~~~I~~nf~~l~~~~~~F~~L~~~~l~~IL~sd~L~V~sE~~v~~avl~Wi~~~~~~~~w 537 (806)
|+.++.+|..|++.+|.+.|.+||..||.++ ..+++|.+||.+.+..||+++++++.+|.++|+++++|+++++
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v-~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~----- 74 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEV-SKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNP----- 74 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHH-TTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTH-----
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHH-ccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCH-----
Confidence 7889999999999999999999999999999 8899999999999999999999999999999999999999984
Q ss_pred chhhHHHhhcCchhhHHHHHHhHhhccccccccccChHHHhh
Q 040529 538 EEMDELIIKLTPELVFEERLQSVNYLLPFVRFPLLPHALLKK 579 (806)
Q Consensus 538 ~~~~~~l~~~~p~~~~~~r~~~l~~Ll~~IRf~lls~~~L~~ 579 (806)
+.|.+++..|+++|||++|+++.|..
T Consensus 75 ----------------~~r~~~~~~Ll~~iR~~~l~~~~L~~ 100 (103)
T PF07707_consen 75 ----------------ENREEHLKELLSCIRFPLLSPEELQN 100 (103)
T ss_dssp ----------------HHHTTTHHHHHCCCHHHCT-HHHHHH
T ss_pred ----------------HHHHHHHHHHHHhCCcccCCHHHHHH
Confidence 56889999999999999999998865
No 20
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.43 E-value=4.2e-13 Score=116.66 Aligned_cols=90 Identities=32% Similarity=0.544 Sum_probs=82.7
Q ss_pred eEEEEEcCeeeEEEeeHHHHhcCCHHHHHhhcCCCCCCCcceEEeCCCCHHHHHHHHhHHhcCccccCCCCchhHHHHHH
Q 040529 349 DVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHLRDVSLKAFKIMLEFMYSGELNIEDSLDFGSLLLQL 428 (806)
Q Consensus 349 DV~l~v~~~~~~~~aHr~ILaa~S~yF~~mf~~~~~Es~~~~I~l~~v~~~~f~~lL~fiYtg~l~i~~~~n~~~~v~~L 428 (806)
|+++.+++.. |++||.+|+++|+||++||.+++.++....+.+++.++++|+.+++|+|++++.+.. .+ +.++
T Consensus 1 dv~i~v~~~~--~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~-~~----~~~l 73 (90)
T smart00225 1 DVTLVVGGKK--FKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPE-EN----VEEL 73 (90)
T ss_pred CeEEEECCEE--EehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCH-HH----HHHH
Confidence 6889998864 999999999999999999999888888889999999999999999999999998876 34 8999
Q ss_pred HHHHHhhCchHHHHHHH
Q 040529 429 LILSDQFGVTLLHQECC 445 (806)
Q Consensus 429 l~~A~~l~l~~L~~~c~ 445 (806)
+.+|++|+++.|++.|+
T Consensus 74 ~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 74 LELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHCcHHHHhhhC
Confidence 99999999999999884
No 21
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.42 E-value=5.7e-13 Score=119.33 Aligned_cols=99 Identities=29% Similarity=0.388 Sum_probs=90.1
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHhchhhhhccccccccCCHHHHHhhccCCCCCCCCHHHHHHHHHHHHhccccccCc
Q 040529 458 CPILQVVTPISSCKLIEETCERKFALHFDYCTTASLDFVFLDEATFSSIIRHPDLTVTSEERVLNAILMWGMKAKELCGW 537 (806)
Q Consensus 458 ~~~l~~~a~~~~~~~L~~~~~~~I~~nf~~l~~~~~~F~~L~~~~l~~IL~sd~L~V~sE~~v~~avl~Wi~~~~~~~~w 537 (806)
|..++.+|..|++..|.+.|.+||..||..+ .++++|..||.+.+..||++++|+|.+|..+|+++++|++++.
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~-~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~----- 74 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEV-AQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDP----- 74 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHH-hcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCH-----
Confidence 5667888999999999999999999999998 7889999999999999999999999899999999999999973
Q ss_pred chhhHHHhhcCchhhHHHHHHhHhhccccccccccChHHHhh
Q 040529 538 EEMDELIIKLTPELVFEERLQSVNYLLPFVRFPLLPHALLKK 579 (806)
Q Consensus 538 ~~~~~~l~~~~p~~~~~~r~~~l~~Ll~~IRf~lls~~~L~~ 579 (806)
..|. .+..++++|||++|++..|..
T Consensus 75 ----------------~~~~-~~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 75 ----------------ERRR-HLPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred ----------------HHHH-HHHHHHHhCCCCCCCHHHHHh
Confidence 3444 889999999999999987753
No 22
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.41 E-value=1.2e-13 Score=144.03 Aligned_cols=110 Identities=26% Similarity=0.433 Sum_probs=96.5
Q ss_pred hHHHHHHHHHhCCCCccEEEEecCCCeEEEeeeeeecccCcccC-------CCCCCceEEeCCCCHHHHHHHHHhhccCc
Q 040529 194 YEKWGLENFFESWELSDMFFIVGTEEKLVPAHKVILQASGNFPL-------SLTGEGIVQLQEVIYPILHALLQFIYTGR 266 (806)
Q Consensus 194 ~~~~~l~~l~~~~~~sDv~~~v~~~~~~~~aHk~ILaarS~~F~-------~~~~~~~i~l~~v~~~~f~~lL~fiYtg~ 266 (806)
.+-+++.+++-+.+++||+|+|. ++.|||||+||||||.||+ .|+.+..|.|++-..++|+.+|+|||||+
T Consensus 30 ~fS~~~~~l~~~e~y~DVtfvve--~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~ 107 (620)
T KOG4350|consen 30 NFSQSFDELFTSEDYSDVTFVVE--DTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGK 107 (620)
T ss_pred chhHHHHHHhhcCcccceEEEEe--ccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcc
Confidence 35689999999999999999996 5889999999999999994 46788899999999999999999999999
Q ss_pred ccCC---CCCchhHHHhhhhccchhhHHHHHHHHHh-hhcccc
Q 040529 267 TQIS---EPLLGPLWALSSQFQVMPLVKQCEETMER-FKLNKK 305 (806)
Q Consensus 267 ~~i~---~~~~~~ll~~A~~~~l~~L~~~C~~~l~~-~~l~~~ 305 (806)
+.+. .+.+.+.|.+|.+|++..|.....+||+. +..+|.
T Consensus 108 ~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~Nv 150 (620)
T KOG4350|consen 108 IDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENV 150 (620)
T ss_pred eecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccce
Confidence 9876 45568889999999999999999999974 444444
No 23
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.35 E-value=1.8e-13 Score=141.67 Aligned_cols=293 Identities=14% Similarity=0.104 Sum_probs=187.1
Q ss_pred HHHHHHHhCC---CCccEEEEecCCCeEEEeeeeeecccCcccCCC-----CCCceEEeCCCCHHHHHHHHHhhccCccc
Q 040529 197 WGLENFFESW---ELSDMFFIVGTEEKLVPAHKVILQASGNFPLSL-----TGEGIVQLQEVIYPILHALLQFIYTGRTQ 268 (806)
Q Consensus 197 ~~l~~l~~~~---~~sDv~~~v~~~~~~~~aHk~ILaarS~~F~~~-----~~~~~i~l~~v~~~~f~~lL~fiYtg~~~ 268 (806)
..+..++.+. -..|++|.+. +|+.|-|||+.|+|||.+|+.. ....+|+-..+-+.+|..+|+|+|-..-.
T Consensus 135 ahi~s~l~dt~l~~~~di~f~~q-~g~~f~ahkfll~arSs~~~~k~v~~~~~~heI~~~~v~~~~f~~flk~lyl~~na 213 (516)
T KOG0511|consen 135 AHIQSSLRDTFLGCCHDIDFLQQ-EGANFDAHKFLLEARSSNYFPKDVMFYVQGHEIEAHRVILSAFSPFLKQLYLNTNA 213 (516)
T ss_pred hHHHHHhhccccccccchHHHhh-ccccccHHHHHHHhhhcccCchhhhhccccCchhhhhhhHhhhhHHHHHHHHhhhh
Confidence 4455555554 3479999987 6899999999999999987432 24556766678899999999999988666
Q ss_pred CCCCCchhHHHhhhhccchhhHHHHHHHHHhhh---cccccccc-cccc--cccCCCCCCccccCCCCcchHHHHHHhhh
Q 040529 269 ISEPLLGPLWALSSQFQVMPLVKQCEETMERFK---LNKKLFDL-GKNV--ELSYPSSRPHCTVFPFGLPINSQRLKQLA 342 (806)
Q Consensus 269 i~~~~~~~ll~~A~~~~l~~L~~~C~~~l~~~~---l~~~~~~~-~~~v--~~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 342 (806)
+....-.+|+.+..+|++..|......--.... .......+ ++.+ ++. +...+.+..+....-+-+.++-
T Consensus 214 ~~~~qynallsi~~kF~~e~l~~~~~kdr~~~~sR~~k~~q~~~tq~~~~~~Li----~~~~~~ykt~~dl~Ns~~~~fs 289 (516)
T KOG0511|consen 214 EWKDQYNALLSIEVKFSKEKLSLEISKDRMEDLSRICKVCQCESTQKIIEKELI----HQRYAEYKTHRDLDNSPMKRFS 289 (516)
T ss_pred hhhhHHHHHHhhhhhccHHHhHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHhhhhccchhhccChhheee
Confidence 666777889999988887666432211100000 00000000 0000 000 0000000000000000011111
Q ss_pred cCCCceeEEEEEcCeeeEEEeeHHHHhcCCHHHHHhhcCCCCCCCc----ceEEeCCCCHHHHHHHHhHHhcCccccCCC
Q 040529 343 SNCEYADVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYS----SDVHLRDVSLKAFKIMLEFMYSGELNIEDS 418 (806)
Q Consensus 343 ~~~~~sDV~l~v~~~~~~~~aHr~ILaa~S~yF~~mf~~~~~Es~~----~~I~l~~v~~~~f~~lL~fiYtg~l~i~~~ 418 (806)
-.+.+ +.+.+++. +|||+++++ |.+||+.||.+++.|+.. ....++.....+.+.+++|+|+++.++..
T Consensus 290 l~~ay--iql~~~~R---yP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~- 362 (516)
T KOG0511|consen 290 LQGAY--IQLPEEDR---YPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIF- 362 (516)
T ss_pred ecccc--cccccccc---ccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchH-
Confidence 11111 44444443 999999996 889999999999999642 24456677889999999999999988775
Q ss_pred CchhHHHHHHHHHHHhhCch--H-HHHHHHHHHhhcC---CCCCcHHHHHHHhhhcCCHHHHHHHHHHHHhchhhhhccc
Q 040529 419 LDFGSLLLQLLILSDQFGVT--L-LHQECCKLLLECF---SEDSVCPILQVVTPISSCKLIEETCERKFALHFDYCTTAS 492 (806)
Q Consensus 419 ~n~~~~v~~Ll~~A~~l~l~--~-L~~~c~~~L~~~l---~~~n~~~~l~~~a~~~~~~~L~~~~~~~I~~nf~~l~~~~ 492 (806)
+.+.+++..|+++-+. . |+.++...|.+.. +.-+ +..++..+.......|...+..|++.|+..+ ...
T Consensus 363 ----~~A~dvll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~-V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l-~~d 436 (516)
T KOG0511|consen 363 ----DVASDVLLFADKLALADDRLLKTAASAEITQWLELIDMYG-VLDILEYCWDLVACRLEQFAETHEARHLLLL-LPD 436 (516)
T ss_pred ----HHHhhHHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhh-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-cCC
Confidence 2388999999999765 2 5555555555433 3334 6777777777888999999999999999988 788
Q ss_pred cccccCCHHHHHhhc
Q 040529 493 LDFVFLDEATFSSII 507 (806)
Q Consensus 493 ~~F~~L~~~~l~~IL 507 (806)
+++...-......|.
T Consensus 437 Pe~~~~~~~s~~ri~ 451 (516)
T KOG0511|consen 437 PEGDSSLRTSVPRIP 451 (516)
T ss_pred chhhHHHHhccchhh
Confidence 888765444444444
No 24
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.32 E-value=1e-12 Score=125.06 Aligned_cols=117 Identities=22% Similarity=0.332 Sum_probs=98.1
Q ss_pred cchhhHHHHHHHHHhCCCCccEEEEecC-CCeEEEeeeeeecccCcccC--CCCC--CceEEeCCCCHHHHHHHHHhhcc
Q 040529 190 ERTGYEKWGLENFFESWELSDMFFIVGT-EEKLVPAHKVILQASGNFPL--SLTG--EGIVQLQEVIYPILHALLQFIYT 264 (806)
Q Consensus 190 ~~~~~~~~~l~~l~~~~~~sDv~~~v~~-~~~~~~aHk~ILaarS~~F~--~~~~--~~~i~l~~v~~~~f~~lL~fiYt 264 (806)
..++-++.-...+++..+|||++|.+++ ..+.+||||.||||||++.. +.+. ..+..+.|+++++|..+++||||
T Consensus 48 SF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~WkfaN~~dekse~~~~dDad~Ea~~t~iRWIYT 127 (280)
T KOG4591|consen 48 SFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFANGGDEKSEELDLDDADFEAFHTAIRWIYT 127 (280)
T ss_pred hHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhhccCCCcchhhhcccccCHHHHHHhheeeec
Confidence 3466777888999999999999999973 35789999999999999963 3222 45566789999999999999999
Q ss_pred CcccCCCCC--chhHHHhhhhccchhhHHHHHHHHH-hhhccccc
Q 040529 265 GRTQISEPL--LGPLWALSSQFQVMPLVKQCEETME-RFKLNKKL 306 (806)
Q Consensus 265 g~~~i~~~~--~~~ll~~A~~~~l~~L~~~C~~~l~-~~~l~~~~ 306 (806)
+++....+. +.++.++|..|++..|++.|++-+. .++++|++
T Consensus 128 DEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCI 172 (280)
T KOG4591|consen 128 DEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCI 172 (280)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHH
Confidence 999987554 6899999999999999999998875 66777774
No 25
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.22 E-value=7.2e-12 Score=108.80 Aligned_cols=83 Identities=33% Similarity=0.511 Sum_probs=75.6
Q ss_pred cEEEEecCCCeEEEeeeeeecccCcccCCC-------CCCceEEeCCCCHHHHHHHHHhhccCcccCCCCCchhHHHhhh
Q 040529 210 DMFFIVGTEEKLVPAHKVILQASGNFPLSL-------TGEGIVQLQEVIYPILHALLQFIYTGRTQISEPLLGPLWALSS 282 (806)
Q Consensus 210 Dv~~~v~~~~~~~~aHk~ILaarS~~F~~~-------~~~~~i~l~~v~~~~f~~lL~fiYtg~~~i~~~~~~~ll~~A~ 282 (806)
|+++.++ ++.|++||.+|+++|+||+.. .....+.++++++++|+.+|+|+|++.+.++..++..++.+|+
T Consensus 1 dv~i~v~--~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVG--GKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEEC--CEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 7899996 689999999999999999542 2567899999999999999999999999999999999999999
Q ss_pred hccchhhHHHHH
Q 040529 283 QFQVMPLVKQCE 294 (806)
Q Consensus 283 ~~~l~~L~~~C~ 294 (806)
.|+++.|.+.|+
T Consensus 79 ~~~~~~l~~~c~ 90 (90)
T smart00225 79 YLQIPGLVELCE 90 (90)
T ss_pred HHCcHHHHhhhC
Confidence 999999999884
No 26
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.11 E-value=5.9e-11 Score=127.69 Aligned_cols=113 Identities=20% Similarity=0.323 Sum_probs=101.8
Q ss_pred ccccchhhHHHHHHHHHhCCCCccEEEEecCC---CeEEEeeeeeecccCcccCC-------CCCCceEEeCCCCHHHHH
Q 040529 187 MIDERTGYEKWGLENFFESWELSDMFFIVGTE---EKLVPAHKVILQASGNFPLS-------LTGEGIVQLQEVIYPILH 256 (806)
Q Consensus 187 ~~~~~~~~~~~~l~~l~~~~~~sDv~~~v~~~---~~~~~aHk~ILaarS~~F~~-------~~~~~~i~l~~v~~~~f~ 256 (806)
.+....+.+......++++...+|+.|+|+++ .+.|||||.|||..|.+|.. +....+|++++|+|++|.
T Consensus 93 nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl 172 (521)
T KOG2075|consen 93 NWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFL 172 (521)
T ss_pred ccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhH
Confidence 34555677889999999999999999999842 47899999999999999943 344689999999999999
Q ss_pred HHHHhhccCcccCCCCCchhHHHhhhhccchhhHHHHHHHHHh
Q 040529 257 ALLQFIYTGRTQISEPLLGPLWALSSQFQVMPLVKQCEETMER 299 (806)
Q Consensus 257 ~lL~fiYtg~~~i~~~~~~~ll~~A~~~~l~~L~~~C~~~l~~ 299 (806)
.+|+|||++.+.+..+++..+|.+|++|-++.|.+.|.+|++.
T Consensus 173 ~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~ 215 (521)
T KOG2075|consen 173 AFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRK 215 (521)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999985
No 27
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.25 E-value=2.7e-06 Score=96.96 Aligned_cols=92 Identities=17% Similarity=0.294 Sum_probs=69.0
Q ss_pred CCCccEEEEecCCCeEEEeeeeeecccCcccC-------CCCCCceEEeCCCCHHHHHHHHHhhc-cCcccCC-----CC
Q 040529 206 WELSDMFFIVGTEEKLVPAHKVILQASGNFPL-------SLTGEGIVQLQEVIYPILHALLQFIY-TGRTQIS-----EP 272 (806)
Q Consensus 206 ~~~sDv~~~v~~~~~~~~aHk~ILaarS~~F~-------~~~~~~~i~l~~v~~~~f~~lL~fiY-tg~~~i~-----~~ 272 (806)
...-|+.++..| |+.++|||++|+||.+||. .|...-.+.+.-+..+.++.+|+|+| +++..+- .+
T Consensus 708 ~e~~d~~i~~KD-Gkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~d 786 (1267)
T KOG0783|consen 708 EETMDTVIKLKD-GKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESD 786 (1267)
T ss_pred ccceeEEEEecC-CcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhh
Confidence 455577777764 8999999999999999993 34444333333455999999999999 5555432 34
Q ss_pred CchhHHHhhhhccchhhHHHHHHHHH
Q 040529 273 LLGPLWALSSQFQVMPLVKQCEETME 298 (806)
Q Consensus 273 ~~~~ll~~A~~~~l~~L~~~C~~~l~ 298 (806)
-+.+++.+||.|-+..|+..|+..|-
T Consensus 787 F~~~il~iaDqlli~~Lk~Ice~~ll 812 (1267)
T KOG0783|consen 787 FMFEILSIADQLLILELKSICEQSLL 812 (1267)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999987764
No 28
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=98.22 E-value=7.2e-06 Score=78.24 Aligned_cols=95 Identities=20% Similarity=0.353 Sum_probs=68.1
Q ss_pred CCCeeEEEecCCceeeEeeeeEeeecC---CcccceEEEEEEecCCCCeEeeEEeecCcccccC---CccceeeecCCCC
Q 040529 697 HNCTWWMVDIGQDHQLMCNYYTLRMDG---SRAYIRYWNFQGSMDGKSWTNLRVHENDQTMCKH---GQFASWAVIGPNA 770 (806)
Q Consensus 697 ~~nsW~~vd~~~~~~~~p~~Y~~r~~~---~~~~lr~W~~~gs~dg~~W~~l~~~~~~~~l~~~---~~~~~~~i~~~~~ 770 (806)
..+.|++|||+..+. .+...++... ....++.|.+++|.||.+|+.+..+.....+... ....+..+. .
T Consensus 43 ~~~~wi~vDL~~~~~--i~~v~i~~~~~~~~~~~~~~~~i~~s~dg~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~---~ 117 (143)
T cd00057 43 DPPQWLQVDLGKTRR--VTGIQTQGRKGGGSSEWVTSYKVQYSLDGETWTTYKDKGEEKVFTGNSDGSTPVTNDFP---P 117 (143)
T ss_pred CCCceEEEECCCCEE--EEEEEEccCCCCCccCeeEEEEEEEECCCCCEeEEEcCCcEEEEeCCcCCCeEEEEeCC---C
Confidence 467899999998643 4555555543 3467999999999999999998764222222221 245666665 3
Q ss_pred CcCeEEEEEEEeccCCCCCCCceEEEeceEEee
Q 040529 771 LRPFRFFRVVLMGPTADAANSWNFCICFLELYG 803 (806)
Q Consensus 771 ~~~~r~fri~q~g~n~~~~~~~~l~l~~~e~~G 803 (806)
....||+||..++.+. .++| .||+||
T Consensus 118 pv~aRyvRl~~~~~~~------~~~l-e~evyG 143 (143)
T cd00057 118 PIVARYIRILPTTWNG------NISL-RLELYG 143 (143)
T ss_pred CEEEEEEEEEEeecCC------ccEE-EEEEcC
Confidence 3479999999998554 5788 999998
No 29
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.90 E-value=1.6e-05 Score=84.58 Aligned_cols=104 Identities=19% Similarity=0.190 Sum_probs=89.9
Q ss_pred HHHHHhCCCCccEEEEecCCCeEEEeeeeeecccCccc-------CCCCCCceEEe----CCCCHHHHHHHHHhhccCcc
Q 040529 199 LENFFESWELSDMFFIVGTEEKLVPAHKVILQASGNFP-------LSLTGEGIVQL----QEVIYPILHALLQFIYTGRT 267 (806)
Q Consensus 199 l~~l~~~~~~sDv~~~v~~~~~~~~aHk~ILaarS~~F-------~~~~~~~~i~l----~~v~~~~f~~lL~fiYtg~~ 267 (806)
...|+.++.-|||++..- |.+-+.||..|. .|+|| ++|+.+..|.| |.|+..+|..++.-+|.+++
T Consensus 60 yq~lf~q~enSDv~l~al--g~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEv 136 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEAL--GFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEV 136 (488)
T ss_pred HHHHHhcCCCcceehhhc--cceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhe
Confidence 567788999999999985 799999999986 57898 44666776766 58999999999999999999
Q ss_pred cCCCCCchhHHHhhhhccchhhHHHHHHHHH-hhhcccc
Q 040529 268 QISEPLLGPLWALSSQFQVMPLVKQCEETME-RFKLNKK 305 (806)
Q Consensus 268 ~i~~~~~~~ll~~A~~~~l~~L~~~C~~~l~-~~~l~~~ 305 (806)
.|..+.+..++++|..+++++|.+.|.+.+. .++..+.
T Consensus 137 eI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta 175 (488)
T KOG4682|consen 137 EIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTA 175 (488)
T ss_pred eccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhh
Confidence 9999999999999999999999999999985 5554443
No 30
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.80 E-value=5.5e-05 Score=76.30 Aligned_cols=136 Identities=17% Similarity=0.212 Sum_probs=89.5
Q ss_pred HHhhccCcccCCCCCchhHHHhhhhccchhhHHHHHHHH-----HhhhcccccccccccccccCCCCCCccccCCCCcch
Q 040529 259 LQFIYTGRTQISEPLLGPLWALSSQFQVMPLVKQCEETM-----ERFKLNKKLFDLGKNVELSYPSSRPHCTVFPFGLPI 333 (806)
Q Consensus 259 L~fiYtg~~~i~~~~~~~ll~~A~~~~l~~L~~~C~~~l-----~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 333 (806)
++|++..+-.-+.+++..+-++-.-+.+.+|-.+.++|- +.+.+.... .-.....
T Consensus 57 kKFi~kRKSnrsaDhak~~~ELikgWdVqDlNaLlaEfE~~SaLkEfql~adl--------------------aR~ea~s 116 (401)
T KOG2838|consen 57 KKFIFKRKSNRSADHAKPFEELIKGWDVQDLNALLAEFEADSALKEFQLLADL--------------------ARKEANS 116 (401)
T ss_pred HHHHhhhccccchhhhhhHHHHHcCCChhhHHHHHHHHhccHHHHHHHHHHhh--------------------cCcchhH
Confidence 456665555555566666666666666666655555542 211110000 0112345
Q ss_pred HHHHHHhhhcCCCceeEEEEEcCeeeEEEeeHHHHhcCCHHHHHhhcCCCCCCCc--ceEEeCCCCHHHHHHHHhHHhcC
Q 040529 334 NSQRLKQLASNCEYADVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYS--SDVHLRDVSLKAFKIMLEFMYSG 411 (806)
Q Consensus 334 ~l~~l~~l~~~~~~sDV~l~v~~~~~~~~aHr~ILaa~S~yF~~mf~~~~~Es~~--~~I~l~~v~~~~f~~lL~fiYtg 411 (806)
.++++...++.....|+-|+.... .|+|||++|++|+|+|+.+.+++-.-... -.+..-+++.++|+.+|+++|+|
T Consensus 117 f~kD~ad~ye~k~c~dldiiFkeT--cfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tg 194 (401)
T KOG2838|consen 117 FLKDFADGYERKVCGDLDIIFKET--CFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITG 194 (401)
T ss_pred HHHHHhhhhheeeeccceeeeeec--cchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhc
Confidence 678888888888888999988775 49999999999999999988753211111 23445578999999999999999
Q ss_pred ccccC
Q 040529 412 ELNIE 416 (806)
Q Consensus 412 ~l~i~ 416 (806)
+.-..
T Consensus 195 EfgmE 199 (401)
T KOG2838|consen 195 EFGME 199 (401)
T ss_pred ccchh
Confidence 87643
No 31
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=97.64 E-value=0.00062 Score=63.13 Aligned_cols=89 Identities=16% Similarity=0.296 Sum_probs=60.8
Q ss_pred CCCCeeEEEecCCceeeEeeeeEeeecCCcccceEEEEEEecCCCCeEeeEEeecCcccccCCccceeeecCCCCCcCeE
Q 040529 696 GHNCTWWMVDIGQDHQLMCNYYTLRMDGSRAYIRYWNFQGSMDGKSWTNLRVHENDQTMCKHGQFASWAVIGPNALRPFR 775 (806)
Q Consensus 696 ~~~nsW~~vd~~~~~~~~p~~Y~~r~~~~~~~lr~W~~~gs~dg~~W~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~~~r 775 (806)
...+.|+.+||+..+.|.--.+.-+.......+++|.+++|.||.+|+.+... ............-.+. .....|
T Consensus 34 ~~~~~~i~idl~~~~~i~~i~i~~~~~~~~~~~~~~~i~~s~dg~~w~~~~~~--~~~~~~~~~~~~~~~~---~~~~~r 108 (129)
T PF00754_consen 34 DDSPQWIQIDLGKPYTISGISIQFRNDGNNGRPKSFKIEYSNDGSNWTTVASQ--FYGNTNSGSVVTISFF---PPVKAR 108 (129)
T ss_dssp SSSTEEEEEEEEEEEEEEEEEEEEESSTTTEEEEEEEEEEESSSSSEEEEEET--EEEESSSSSSEEEEEE---EEEEEE
T ss_pred CCCCceEEEEeeeeEecceeeecccccccceeeeeeeeeeecccccccccccc--eeeccCCCceEEEEeC---CCeEEE
Confidence 67999999999987666655555555444457999999999999999998875 1111112222222333 233689
Q ss_pred EEEEEEeccCCCCC
Q 040529 776 FFRVVLMGPTADAA 789 (806)
Q Consensus 776 ~fri~q~g~n~~~~ 789 (806)
|+||..++.++.+.
T Consensus 109 yiri~~~~~~~~~~ 122 (129)
T PF00754_consen 109 YIRITVTSWNGNNG 122 (129)
T ss_dssp EEEEEEEEEESCSS
T ss_pred EEEEEEEEECCCCc
Confidence 99999998666554
No 32
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.30 E-value=0.0005 Score=75.28 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=50.9
Q ss_pred eEEEeccc-----CCceeEecCCCCcEEEeccCCCCCcC------CCCeEEeecccCCccccCCeeecCCCCeeEEEec
Q 040529 639 VLYFAGTS-----YGEHPWVNPVLAKRINITASSPISRY------TDPKALASRTYQGLSFAGPRMEDGHNCTWWMVDI 706 (806)
Q Consensus 639 vlY~iGg~-----~~sve~ynP~~~~w~~vt~s~~~~r~------~~~~~~v~~g~~g~~~~~~~~y~~~~nsW~~vd~ 706 (806)
.||++||. ..++++|||.+++|..+.+++..+|. .++++|+.||+++....+.++||+.+|+|..++.
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~ 203 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVAD 203 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCC
Confidence 56666664 34799999999999887654434552 4568999999876544556789999999998864
No 33
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.0014 Score=66.47 Aligned_cols=98 Identities=21% Similarity=0.321 Sum_probs=80.4
Q ss_pred EEEEEcCeeeEEEeeHHHHhcCCHHHHHhhcCCCC--CCCcceEEeCCCCHHHHHHHHhHHhcCccccCCCCchhHHHHH
Q 040529 350 VNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMS--ESYSSDVHLRDVSLKAFKIMLEFMYSGELNIEDSLDFGSLLLQ 427 (806)
Q Consensus 350 V~l~v~~~~~~~~aHr~ILaa~S~yF~~mf~~~~~--Es~~~~I~l~~v~~~~f~~lL~fiYtg~l~i~~~~n~~~~v~~ 427 (806)
|.|.|+|. .|...+.-|.....+|++|+..++. -..+..|-| |=+|.-|+.+|+||-.|.+.++..+ ..+.+
T Consensus 7 vkLnvGG~--~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~---kel~E 80 (230)
T KOG2716|consen 7 VKLNVGGT--IFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESE---KELKE 80 (230)
T ss_pred EEEecCCe--EEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccch---HHHHH
Confidence 45778886 4999999999999999999998764 223345666 4589999999999999999876533 24899
Q ss_pred HHHHHHhhCchHHHHHHHHHHhhcCC
Q 040529 428 LLILSDQFGVTLLHQECCKLLLECFS 453 (806)
Q Consensus 428 Ll~~A~~l~l~~L~~~c~~~L~~~l~ 453 (806)
|+.=|.+|.++.|++.|...|.....
T Consensus 81 l~~EA~fYlL~~Lv~~C~~~i~~~~~ 106 (230)
T KOG2716|consen 81 LLREAEFYLLDGLVELCQSAIARLIR 106 (230)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhccc
Confidence 99999999999999999998876543
No 34
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.18 E-value=0.00061 Score=75.36 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=50.3
Q ss_pred eEEEeccc-----------CCceeEecCCCCcEEEeccCCCCCcC-------CCCeEEeecccCCcc-------------
Q 040529 639 VLYFAGTS-----------YGEHPWVNPVLAKRINITASSPISRY-------TDPKALASRTYQGLS------------- 687 (806)
Q Consensus 639 vlY~iGg~-----------~~sve~ynP~~~~w~~vt~s~~~~r~-------~~~~~~v~~g~~g~~------------- 687 (806)
.||++||. ..++++|||.+++|..++++++..|. .++++|++||+.+..
T Consensus 65 ~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~ 144 (346)
T TIGR03547 65 KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADK 144 (346)
T ss_pred EEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCc
Confidence 56666664 24689999999999988644455442 477999999986421
Q ss_pred ----------------------ccCCeeecCCCCeeEEEecC
Q 040529 688 ----------------------FAGPRMEDGHNCTWWMVDIG 707 (806)
Q Consensus 688 ----------------------~~~~~~y~~~~nsW~~vd~~ 707 (806)
....++||+.+|+|..++..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~ 186 (346)
T TIGR03547 145 DSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN 186 (346)
T ss_pred cchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccC
Confidence 13456799999999998644
No 35
>PF13964 Kelch_6: Kelch motif
Probab=97.09 E-value=0.00072 Score=51.94 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=26.9
Q ss_pred cccceeeecCCCCceEEEecccCCceeEecCCCCcEEEeccCCCCCc
Q 040529 625 FKELQYICDGDSNGVLYFAGTSYGEHPWVNPVLAKRINITASSPISR 671 (806)
Q Consensus 625 ~~e~i~~~gG~~~gvlY~iGg~~~sve~ynP~~~~w~~vt~s~~~~r 671 (806)
..+.+|++||..+. +...+.+++|||.+++|..++ +||.+|
T Consensus 10 ~~~~iyv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~-~mp~pR 50 (50)
T PF13964_consen 10 VGGKIYVFGGYDNS-----GKYSNDVERYDPETNTWEQLP-PMPTPR 50 (50)
T ss_pred ECCEEEEECCCCCC-----CCccccEEEEcCCCCcEEECC-CCCCCC
Confidence 34455555554332 223458999999999998874 566655
No 36
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=97.04 E-value=0.0089 Score=56.52 Aligned_cols=107 Identities=15% Similarity=0.310 Sum_probs=67.9
Q ss_pred cCCeeecCCCCeeEEEecCCceeeEeeeeEeeecCC-----cccceEEEEEEecCCCC--eEeeEEeecCcccccCCccc
Q 040529 689 AGPRMEDGHNCTWWMVDIGQDHQLMCNYYTLRMDGS-----RAYIRYWNFQGSMDGKS--WTNLRVHENDQTMCKHGQFA 761 (806)
Q Consensus 689 ~~~~~y~~~~nsW~~vd~~~~~~~~p~~Y~~r~~~~-----~~~lr~W~~~gs~dg~~--W~~l~~~~~~~~l~~~~~~~ 761 (806)
.++||--..+..|+.|.|.. .+.++..++.|-.. .+.+|.|.+.|+.++.+ |..|..=+-+ .....+-
T Consensus 21 ~g~Cw~~~g~~~~~~I~L~~--~I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~~~~~~~~~LG~f~y~---~~~~~~Q 95 (135)
T PF07738_consen 21 PGPCWAFEGSKGWLTIELSE--PIYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVDYPDEEWVLLGEFEYD---SDGNSIQ 95 (135)
T ss_dssp TT-SEEEETT-EEEEEEEEE--EEEEEEEEEE---GGGSG-TTSB-EEEEEEESSSSTS--EEEEEEE-----TTS-SEE
T ss_pred CCccCccCCCceEEEEEcCC--cEEEEEEEEEEeccccCCcCCCCcEEEEEEEecccccceeeeceEEEc---CCcCccE
Confidence 34565445567899999998 68999999999743 47799999999997753 8888753311 1224568
Q ss_pred eeeecCCCCCcCeEEEEEEEeccCCCCCCCceEEEeceEEeee
Q 040529 762 SWAVIGPNALRPFRFFRVVLMGPTADAANSWNFCICFLELYGY 804 (806)
Q Consensus 762 ~~~i~~~~~~~~~r~fri~q~g~n~~~~~~~~l~l~~~e~~G~ 804 (806)
+|++..+. ..+++++||+.+... |+ .++-||..|+.||.
T Consensus 96 tF~l~~~~-~~~~~~i~l~i~sN~--G~-~~ytclyr~rVhG~ 134 (135)
T PF07738_consen 96 TFPLPRPP-RQPVRYIKLRILSNH--GN-EEYTCLYRFRVHGE 134 (135)
T ss_dssp EEE-SS---S--EEEEEEEE--BS--S--SSEEEE-EEEEEEE
T ss_pred eeeeccCc-hhcCcEEEEEEEcCC--CC-CceEEEEEEEEEee
Confidence 99998332 338999999999766 32 25999999999996
No 37
>PLN02153 epithiospecifier protein
Probab=96.94 E-value=0.0025 Score=70.29 Aligned_cols=68 Identities=13% Similarity=0.073 Sum_probs=48.9
Q ss_pred eEEEecccC-----CceeEecCCCCcEEEeccC----CCCCcC------CCCeEEeecccCCcc-------ccCCeeecC
Q 040529 639 VLYFAGTSY-----GEHPWVNPVLAKRINITAS----SPISRY------TDPKALASRTYQGLS-------FAGPRMEDG 696 (806)
Q Consensus 639 vlY~iGg~~-----~sve~ynP~~~~w~~vt~s----~~~~r~------~~~~~~v~~g~~g~~-------~~~~~~y~~ 696 (806)
.||++||.. ..+++|||.+++|..+.++ .|.+|. .++++|+.||+.... +.....||+
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~ 166 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI 166 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEEC
Confidence 677777753 4789999999999887543 145553 456889999975321 234557999
Q ss_pred CCCeeEEEec
Q 040529 697 HNCTWWMVDI 706 (806)
Q Consensus 697 ~~nsW~~vd~ 706 (806)
.+++|..+..
T Consensus 167 ~~~~W~~l~~ 176 (341)
T PLN02153 167 ADGKWVQLPD 176 (341)
T ss_pred CCCeEeeCCC
Confidence 9999998754
No 38
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=96.92 E-value=0.0035 Score=70.16 Aligned_cols=60 Identities=12% Similarity=0.019 Sum_probs=43.7
Q ss_pred CceeEecCCCCcEEEeccCCCCCcC-------CCCeEEeecccCCcc---------------------------------
Q 040529 648 GEHPWVNPVLAKRINITASSPISRY-------TDPKALASRTYQGLS--------------------------------- 687 (806)
Q Consensus 648 ~sve~ynP~~~~w~~vt~s~~~~r~-------~~~~~~v~~g~~g~~--------------------------------- 687 (806)
..+++|||.+++|..+++++|.++. .++++|+.||..+..
T Consensus 106 ~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (376)
T PRK14131 106 DDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDY 185 (376)
T ss_pred ccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhc
Confidence 4689999999999998754444431 578999999975421
Q ss_pred --ccCCeeecCCCCeeEEEecC
Q 040529 688 --FAGPRMEDGHNCTWWMVDIG 707 (806)
Q Consensus 688 --~~~~~~y~~~~nsW~~vd~~ 707 (806)
....++||+.+|+|..++..
T Consensus 186 ~~~~~v~~YD~~t~~W~~~~~~ 207 (376)
T PRK14131 186 FFNKEVLSYDPSTNQWKNAGES 207 (376)
T ss_pred CcCceEEEEECCCCeeeECCcC
Confidence 12345699999999987643
No 39
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.89 E-value=0.005 Score=52.67 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=62.8
Q ss_pred EEEEEcCeeeEEEeeHHHHhcCCHHHHHhhcCC--CCCCCcceEEeCCCCHHHHHHHHhHH-----hcCc-cccCCCCch
Q 040529 350 VNIYVESHGLVAQSHKIILSLWSVPFAKMFTNG--MSESYSSDVHLRDVSLKAFKIMLEFM-----YSGE-LNIEDSLDF 421 (806)
Q Consensus 350 V~l~v~~~~~~~~aHr~ILaa~S~yF~~mf~~~--~~Es~~~~I~l~~v~~~~f~~lL~fi-----Ytg~-l~i~~~~n~ 421 (806)
|.++.+|. .+|-..|.+ |.-|+-.|+||.+. +.|...+++.+++++...++.+.+|+ |++. .++..-+-.
T Consensus 19 VkLvS~Dd-hefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ip 96 (112)
T KOG3473|consen 19 VKLVSSDD-HEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIP 96 (112)
T ss_pred eEeecCCC-cEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCC
Confidence 34444443 246666654 45799999999975 45666789999999999999999999 6665 444443334
Q ss_pred hHHHHHHHHHHHhhC
Q 040529 422 GSLLLQLLILSDQFG 436 (806)
Q Consensus 422 ~~~v~~Ll~~A~~l~ 436 (806)
.+++++||.+|++|.
T Consensus 97 pemaleLL~aAn~Le 111 (112)
T KOG3473|consen 97 PEMALELLMAANYLE 111 (112)
T ss_pred HHHHHHHHHHhhhhc
Confidence 467999999999885
No 40
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.82 E-value=0.0023 Score=56.40 Aligned_cols=88 Identities=20% Similarity=0.372 Sum_probs=65.0
Q ss_pred EEEEEcCeeeEEEeeHHHHh-cCCHHHHHhhcCC---CCCCCcceEEeCCCCHHHHHHHHhHHhc-CccccCCCCchhHH
Q 040529 350 VNIYVESHGLVAQSHKIILS-LWSVPFAKMFTNG---MSESYSSDVHLRDVSLKAFKIMLEFMYS-GELNIEDSLDFGSL 424 (806)
Q Consensus 350 V~l~v~~~~~~~~aHr~ILa-a~S~yF~~mf~~~---~~Es~~~~I~l~~v~~~~f~~lL~fiYt-g~l~i~~~~n~~~~ 424 (806)
|.|.|+|.. |.+-+..|. ....+|.+|+... ........+-| |=++..|+.||+|+.+ +.+.......
T Consensus 1 V~lNVGG~~--f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~---- 73 (94)
T PF02214_consen 1 VRLNVGGTI--FETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEIC---- 73 (94)
T ss_dssp EEEEETTEE--EEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-----
T ss_pred CEEEECCEE--EEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchh----
Confidence 678999975 999999998 5567899999864 33344566766 5699999999999999 6666543333
Q ss_pred HHHHHHHHHhhCchHH-HHHH
Q 040529 425 LLQLLILSDQFGVTLL-HQEC 444 (806)
Q Consensus 425 v~~Ll~~A~~l~l~~L-~~~c 444 (806)
+..+++-|.+|+++.| ++.|
T Consensus 74 ~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 74 LEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHHHHHT-HHHHBHHC
T ss_pred HHHHHHHHHHcCCCccccCCC
Confidence 8899999999999998 6655
No 41
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=96.73 E-value=0.0093 Score=65.30 Aligned_cols=67 Identities=10% Similarity=0.101 Sum_probs=48.7
Q ss_pred eEEEecccC-----CceeEecCCCCcE---EEeccCCCCCcC------CCCeEEeecccCC-ccccCCeeecCCCCeeEE
Q 040529 639 VLYFAGTSY-----GEHPWVNPVLAKR---INITASSPISRY------TDPKALASRTYQG-LSFAGPRMEDGHNCTWWM 703 (806)
Q Consensus 639 vlY~iGg~~-----~sve~ynP~~~~w---~~vt~s~~~~r~------~~~~~~v~~g~~g-~~~~~~~~y~~~~nsW~~ 703 (806)
.||++||.. .++++||+.+++| |+..+++|.+|. .++++|+.||... ......++||+.+++|..
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~ 153 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFE 153 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeE
Confidence 566666643 4789999999998 344566666652 4578999999643 333556779999999999
Q ss_pred Ee
Q 040529 704 VD 705 (806)
Q Consensus 704 vd 705 (806)
++
T Consensus 154 ~~ 155 (323)
T TIGR03548 154 LP 155 (323)
T ss_pred CC
Confidence 86
No 42
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.68 E-value=0.0018 Score=68.61 Aligned_cols=89 Identities=11% Similarity=0.204 Sum_probs=68.4
Q ss_pred eeEEEeeHHHHhcCCHHHHHhhcCCCCC-CCcceEEeC-CCCHHHHHHHHhHHhcCccccCCCCchhHHHHHHHHHHHhh
Q 040529 358 GLVAQSHKIILSLWSVPFAKMFTNGMSE-SYSSDVHLR-DVSLKAFKIMLEFMYSGELNIEDSLDFGSLLLQLLILSDQF 435 (806)
Q Consensus 358 ~~~~~aHr~ILaa~S~yF~~mf~~~~~E-s~~~~I~l~-~v~~~~f~~lL~fiYtg~l~i~~~~n~~~~v~~Ll~~A~~l 435 (806)
.+.|.|.+-+|...=.||+..+.....+ ....+|+|. .-+-.+|+-+++|+......+++ .| ++.||.-|++|
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~-~N----vvsIliSS~FL 87 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTP-SN----VVSILISSEFL 87 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCc-Cc----EEEeEehhhhh
Confidence 3459999999999999999999653222 222455555 46889999999999998888776 66 88888888888
Q ss_pred CchHHHHHHHHHHhhc
Q 040529 436 GVTLLHQECCKLLLEC 451 (806)
Q Consensus 436 ~l~~L~~~c~~~L~~~ 451 (806)
+|+.|++.|..|+.++
T Consensus 88 ~M~~Lve~cl~y~~~~ 103 (317)
T PF11822_consen 88 QMESLVEECLQYCHDH 103 (317)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 8888877777766543
No 43
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.62 E-value=0.0034 Score=69.38 Aligned_cols=61 Identities=10% Similarity=-0.004 Sum_probs=41.2
Q ss_pred CceeEecCCCCcEEEeccCCCCCcC------CCCeEEeecccCCcccc--CCeee--cCCCCeeEEEecCC
Q 040529 648 GEHPWVNPVLAKRINITASSPISRY------TDPKALASRTYQGLSFA--GPRME--DGHNCTWWMVDIGQ 708 (806)
Q Consensus 648 ~sve~ynP~~~~w~~vt~s~~~~r~------~~~~~~v~~g~~g~~~~--~~~~y--~~~~nsW~~vd~~~ 708 (806)
.++++|||.+++|..+.+++..+|. .++++|+.||+...... ....| ++.+++|..+....
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~ 238 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLP 238 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCC
Confidence 5799999999999887655433452 35689999997533222 22234 56778999876543
No 44
>PLN02153 epithiospecifier protein
Probab=96.17 E-value=0.016 Score=63.92 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=50.7
Q ss_pred cccceeeecCCCCceEEEeccc----CCceeEecCCCCcEEEeccC--CCCCcC------CCCeEEeecccCC-------
Q 040529 625 FKELQYICDGDSNGVLYFAGTS----YGEHPWVNPVLAKRINITAS--SPISRY------TDPKALASRTYQG------- 685 (806)
Q Consensus 625 ~~e~i~~~gG~~~gvlY~iGg~----~~sve~ynP~~~~w~~vt~s--~~~~r~------~~~~~~v~~g~~g------- 685 (806)
....+|++||.... +..||. .+.+++|||.+++|..+... +|.+|. .++++|+.||+..
T Consensus 192 ~~~~iyv~GG~~~~--~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 269 (341)
T PLN02153 192 VQGKIWVVYGFATS--ILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHL 269 (341)
T ss_pred ECCeEEEEeccccc--cccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccccc
Confidence 34556666653221 122332 24799999999999988642 355553 4568899999631
Q ss_pred -cc--ccCCeeecCCCCeeEEEe
Q 040529 686 -LS--FAGPRMEDGHNCTWWMVD 705 (806)
Q Consensus 686 -~~--~~~~~~y~~~~nsW~~vd 705 (806)
.. ......||+.+++|..+.
T Consensus 270 ~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 270 GPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred ccccccccEEEEEcCccEEEecc
Confidence 11 134457999999999885
No 45
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
Probab=96.15 E-value=0.038 Score=52.45 Aligned_cols=93 Identities=22% Similarity=0.282 Sum_probs=56.1
Q ss_pred CCeeEEEecCCceeeEeeeeEeeecCCcccceEEEEEEecCCCCeEeeEEeecCcccccC---CccceeeecCCCCCcCe
Q 040529 698 NCTWWMVDIGQDHQLMCNYYTLRMDGSRAYIRYWNFQGSMDGKSWTNLRVHENDQTMCKH---GQFASWAVIGPNALRPF 774 (806)
Q Consensus 698 ~nsW~~vd~~~~~~~~p~~Y~~r~~~~~~~lr~W~~~gs~dg~~W~~l~~~~~~~~l~~~---~~~~~~~i~~~~~~~~~ 774 (806)
...|++||++..+.|..-.+..+.+ .........+ .|.||.+|..+.. .+...+... ....+..+. .....
T Consensus 43 ~~~wlqvDLg~~~~v~~i~~qg~~~-~~~~~~~~~~-~s~dg~~W~~~~~-~~~~~f~gn~d~~~~~~~~~~---~~v~A 116 (139)
T smart00231 43 LPPWIQVDLGRTRTVTGVITGGRHG-DGDGVTYKLL-YSDDGNNWTTYKD-GNSKVFPGNSDAGTVVVNEFP---PPIVA 116 (139)
T ss_pred CCceeEeeccCcEEEEEEEecccCC-CCcEEEEEEE-EEeCCCCEeEEeC-CCeEEEeCccCCCceEEEecC---CCEEE
Confidence 4679999999876665555544433 2234455666 8999999997753 111222222 223333343 23358
Q ss_pred EEEEEEEeccCCCCCCCceEEEeceEEee
Q 040529 775 RFFRVVLMGPTADAANSWNFCICFLELYG 803 (806)
Q Consensus 775 r~fri~q~g~n~~~~~~~~l~l~~~e~~G 803 (806)
||+||.-++-+ + ..++ .+|+||
T Consensus 117 RyvRi~p~~~~--~----~~~~-r~ElyG 138 (139)
T smart00231 117 RYIRILPTGWN--G----NIIL-RVELLG 138 (139)
T ss_pred EEEEEEEeEcC--C----CcEE-EEEEEc
Confidence 99999999433 2 2344 599999
No 46
>PLN02193 nitrile-specifier protein
Probab=96.09 E-value=0.034 Score=64.19 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=49.8
Q ss_pred eEEEeccc-----CCceeEecCCCCcEEEeccCC--CCCcC------CCCeEEeecccCCccc-cCCeeecCCCCeeEEE
Q 040529 639 VLYFAGTS-----YGEHPWVNPVLAKRINITASS--PISRY------TDPKALASRTYQGLSF-AGPRMEDGHNCTWWMV 704 (806)
Q Consensus 639 vlY~iGg~-----~~sve~ynP~~~~w~~vt~s~--~~~r~------~~~~~~v~~g~~g~~~-~~~~~y~~~~nsW~~v 704 (806)
.||++||. .+.+++|||.+++|..+.++. |.+|. .++++|+.||+.+... .....||+.+++|..+
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~ 309 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHC 309 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeC
Confidence 56666664 357999999999999886542 55663 3467899999866433 3456799999999987
Q ss_pred ec
Q 040529 705 DI 706 (806)
Q Consensus 705 d~ 706 (806)
+.
T Consensus 310 ~~ 311 (470)
T PLN02193 310 ST 311 (470)
T ss_pred CC
Confidence 64
No 47
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=96.07 E-value=0.0091 Score=66.87 Aligned_cols=61 Identities=13% Similarity=-0.018 Sum_probs=41.3
Q ss_pred CceeEecCCCCcEEEeccCCCCCcC------CCCeEEeecccCCccccCCe----eecCCCCeeEEEecCC
Q 040529 648 GEHPWVNPVLAKRINITASSPISRY------TDPKALASRTYQGLSFAGPR----MEDGHNCTWWMVDIGQ 708 (806)
Q Consensus 648 ~sve~ynP~~~~w~~vt~s~~~~r~------~~~~~~v~~g~~g~~~~~~~----~y~~~~nsW~~vd~~~ 708 (806)
..+++|||.+++|..+.+++..+|. .++++|+.||.........+ .||+.+++|..+...+
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p 259 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLP 259 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCC
Confidence 4689999999999887554433452 35678999986432222222 2688899999887543
No 48
>PLN02193 nitrile-specifier protein
Probab=95.88 E-value=0.017 Score=66.59 Aligned_cols=68 Identities=18% Similarity=0.097 Sum_probs=50.0
Q ss_pred eEEEecccC-----CceeEecCCCCcEEEeccC--CCCCcC------CCCeEEeecccCCccccCCeeecCCCCeeEEEe
Q 040529 639 VLYFAGTSY-----GEHPWVNPVLAKRINITAS--SPISRY------TDPKALASRTYQGLSFAGPRMEDGHNCTWWMVD 705 (806)
Q Consensus 639 vlY~iGg~~-----~sve~ynP~~~~w~~vt~s--~~~~r~------~~~~~~v~~g~~g~~~~~~~~y~~~~nsW~~vd 705 (806)
.||++||.. ..++.|||.+++|..+.+. ++.+|. .++++|+.+|+.|.......+||+.+++|..++
T Consensus 280 ~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~ 359 (470)
T PLN02193 280 NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVE 359 (470)
T ss_pred EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEec
Confidence 455555542 4689999999999877542 344453 356789999987766566678999999999986
Q ss_pred c
Q 040529 706 I 706 (806)
Q Consensus 706 ~ 706 (806)
.
T Consensus 360 ~ 360 (470)
T PLN02193 360 T 360 (470)
T ss_pred c
Confidence 4
No 49
>smart00612 Kelch Kelch domain.
Probab=95.86 E-value=0.013 Score=43.67 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=21.1
Q ss_pred CCceeEecCCCCcEEEeccCCCCCcCCCC
Q 040529 647 YGEHPWVNPVLAKRINITASSPISRYTDP 675 (806)
Q Consensus 647 ~~sve~ynP~~~~w~~vt~s~~~~r~~~~ 675 (806)
..++++|||.+++|..+. +|+.+|...+
T Consensus 14 ~~~v~~yd~~~~~W~~~~-~~~~~r~~~~ 41 (47)
T smart00612 14 LKSVEVYDPETNKWTPLP-SMPTPRSGHG 41 (47)
T ss_pred eeeEEEECCCCCeEccCC-CCCCccccce
Confidence 357999999999998764 5666665544
No 50
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.84 E-value=0.0025 Score=68.84 Aligned_cols=123 Identities=15% Similarity=0.089 Sum_probs=97.7
Q ss_pred EEEeeHHHHhcCCHHHHHhhcCCCCCCCcceEEeCCCCHHHHHHHHhHHhcCccccCCCCchhHHHH---HHHHHHHhhC
Q 040529 360 VAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHLRDVSLKAFKIMLEFMYSGELNIEDSLDFGSLLL---QLLILSDQFG 436 (806)
Q Consensus 360 ~~~aHr~ILaa~S~yF~~mf~~~~~Es~~~~I~l~~v~~~~f~~lL~fiYtg~l~i~~~~n~~~~v~---~Ll~~A~~l~ 436 (806)
.+.+|+.+++++|+.|++|+..+..+.....+.+.+.++..++.+..|.|...-.... +. +. .++.+|..++
T Consensus 111 ~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~-~~----~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 111 FLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSV-ER----IFEKHPDLAAAFKYK 185 (297)
T ss_pred EEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHH-HH----hhcCChhhhhccccc
Confidence 3899999999999999999998777776677788899999999999999985432221 11 32 7788999999
Q ss_pred chHHHHHHHHHHhhcCCCCCcHHHHHHHhhhcCCHHHHHHHHHHHHh--chhhh
Q 040529 437 VTLLHQECCKLLLECFSEDSVCPILQVVTPISSCKLIEETCERKFAL--HFDYC 488 (806)
Q Consensus 437 l~~L~~~c~~~L~~~l~~~n~~~~l~~~a~~~~~~~L~~~~~~~I~~--nf~~l 488 (806)
...|+..|...+...++..+++.. +..+..+.+..+...+..++.. +++.+
T Consensus 186 ~~~lk~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~ld~l 238 (297)
T KOG1987|consen 186 NRHLKLACMPVLLSLIETLNVSQS-LQEASNYDLKEAKSALTYVIAAGFKLDWL 238 (297)
T ss_pred cHHHHHHHHHHHHHHHHhhhhccc-HHHhchhHHHHHHHHHHHHHhccchHhHH
Confidence 999999999999998888763444 4466777888888888888887 54554
No 51
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=95.69 E-value=0.0096 Score=44.83 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=20.9
Q ss_pred eEEEecccC------CceeEecCCCCcEEEeccC
Q 040529 639 VLYFAGTSY------GEHPWVNPVLAKRINITAS 666 (806)
Q Consensus 639 vlY~iGg~~------~sve~ynP~~~~w~~vt~s 666 (806)
.||++||.. .++++|||.+++|..++++
T Consensus 13 ~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 13 KIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp EEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 555555543 3899999999999988554
No 52
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=94.86 E-value=0.055 Score=47.53 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=58.9
Q ss_pred EEEEecCCCeEEEeeeeeeccc-CcccCCC----------CCCceEEeCCCCHHHHHHHHHhhcc-CcccCC-CCCchhH
Q 040529 211 MFFIVGTEEKLVPAHKVILQAS-GNFPLSL----------TGEGIVQLQEVIYPILHALLQFIYT-GRTQIS-EPLLGPL 277 (806)
Q Consensus 211 v~~~v~~~~~~~~aHk~ILaar-S~~F~~~----------~~~~~i~l~~v~~~~f~~lL~fiYt-g~~~i~-~~~~~~l 277 (806)
|+|.|| |+.|.+-+..|... ..+|... ....++.| |-+|..|+.+|+|+-+ +.+..+ ...+..+
T Consensus 1 V~lNVG--G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVG--GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEET--TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEEC--CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 678897 89999999999844 4565321 34456666 5799999999999999 677664 5667899
Q ss_pred HHhhhhccchhh-HHHH
Q 040529 278 WALSSQFQVMPL-VKQC 293 (806)
Q Consensus 278 l~~A~~~~l~~L-~~~C 293 (806)
++-|..|++..+ ++.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999998 7776
No 53
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=94.72 E-value=0.05 Score=55.45 Aligned_cols=86 Identities=19% Similarity=0.307 Sum_probs=70.4
Q ss_pred EEEEecCCCeEEEeeeeeecccCcccCCC---------CCCceEEeCCCCHHHHHHHHHhhccCcccCCCC--CchhHHH
Q 040529 211 MFFIVGTEEKLVPAHKVILQASGNFPLSL---------TGEGIVQLQEVIYPILHALLQFIYTGRTQISEP--LLGPLWA 279 (806)
Q Consensus 211 v~~~v~~~~~~~~aHk~ILaarS~~F~~~---------~~~~~i~l~~v~~~~f~~lL~fiYtg~~~i~~~--~~~~ll~ 279 (806)
|.+-|| |+.|...|.-|.--..||..+ .....|.| |=+|.-|..+|.||=.|.+.++.. .+.+|+.
T Consensus 7 vkLnvG--G~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVG--GTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecC--CeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 457786 889999999999988888442 22344555 569999999999999998887755 4679999
Q ss_pred hhhhccchhhHHHHHHHHHh
Q 040529 280 LSSQFQVMPLVKQCEETMER 299 (806)
Q Consensus 280 ~A~~~~l~~L~~~C~~~l~~ 299 (806)
-|..|.+..|+++|..-+..
T Consensus 84 EA~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 84 EAEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred HHHHhhHHHHHHHHHHHhhh
Confidence 99999999999999997764
No 54
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=94.65 E-value=0.17 Score=45.37 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=59.7
Q ss_pred eEEEEEcCeeeEEEeeHHHHhcCCHHHHHhhcCCCCC-CCcceEEeCCCCHHHHHHHHhHHhcCccc---------cCCC
Q 040529 349 DVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSE-SYSSDVHLRDVSLKAFKIMLEFMYSGELN---------IEDS 418 (806)
Q Consensus 349 DV~l~v~~~~~~~~aHr~ILaa~S~yF~~mf~~~~~E-s~~~~I~l~~v~~~~f~~lL~fiYtg~l~---------i~~~ 418 (806)
.++|+..++. +|.+.+.+. ..|..++.|+.+.-.+ .....|.+++++..+++.+++|++.-.-. ++..
T Consensus 3 ~v~L~S~Dg~-~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 3 YIKLISSDGE-VFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred eEEEEeCCCC-EEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 3566666654 599999987 5899999999863322 22258999999999999999999753211 1100
Q ss_pred C-----chhHHHHHHHHHHHhhCc
Q 040529 419 L-----DFGSLLLQLLILSDQFGV 437 (806)
Q Consensus 419 ~-----n~~~~v~~Ll~~A~~l~l 437 (806)
+ --.+.+.+|+.||++|++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 0 001358888888888864
No 55
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=94.02 E-value=0.049 Score=57.88 Aligned_cols=132 Identities=10% Similarity=0.085 Sum_probs=95.0
Q ss_pred CeEEEeeeeeecccCcccCC--------CCCCceEEeC-CCCHHHHHHHHHhhccCcccCCCCCchhHHHhhhhccchhh
Q 040529 219 EKLVPAHKVILQASGNFPLS--------LTGEGIVQLQ-EVIYPILHALLQFIYTGRTQISEPLLGPLWALSSQFQVMPL 289 (806)
Q Consensus 219 ~~~~~aHk~ILaarS~~F~~--------~~~~~~i~l~-~v~~~~f~~lL~fiYtg~~~i~~~~~~~ll~~A~~~~l~~L 289 (806)
.+.|.|.+-+|-.-=.||.. ....++|.|. ..+-.+|+=+++|+......++.+++..+|--|+.++|+.|
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~L 92 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESL 92 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHH
Confidence 45799999999999999932 2334567774 67889999999999998889999999999999999999999
Q ss_pred HHHHHHHHH-hhhcccccccccccccccCCCCCCccccCCCCcchHHHHHHhhhcCCCceeEEEEEcCeeeEEEeeHHH
Q 040529 290 VKQCEETME-RFKLNKKLFDLGKNVELSYPSSRPHCTVFPFGLPINSQRLKQLASNCEYADVNIYVESHGLVAQSHKII 367 (806)
Q Consensus 290 ~~~C~~~l~-~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~sDV~l~v~~~~~~~~aHr~I 367 (806)
++.|..|+. ++. .+-.++.++ .| -...++..|..++..+++.+.-+.+.|++.++...|-+
T Consensus 93 ve~cl~y~~~~~~---~Iv~~~~nl----------~C----l~~~Ll~RLa~~~t~~el~~~~l~l~D~kdk~~sn~kl 154 (317)
T PF11822_consen 93 VEECLQYCHDHMS---EIVASPCNL----------NC----LNDNLLTRLADMFTHEELEAAFLRLKDKKDKIKSNRKL 154 (317)
T ss_pred HHHHHHHHHHhHH---HHHcCCCCc----------cc----CCHHHHHHHHHhcCcccHhHhhhhhcCchhccccHHHH
Confidence 999999985 321 110011000 00 12345788888888888877666666665445444333
No 56
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=93.79 E-value=0.12 Score=39.32 Aligned_cols=44 Identities=16% Similarity=0.152 Sum_probs=29.4
Q ss_pred ceeeecCCCCceEEEecccCCceeEecCCCCcEEEeccCCCCCcCCCCe
Q 040529 628 LQYICDGDSNGVLYFAGTSYGEHPWVNPVLAKRINITASSPISRYTDPK 676 (806)
Q Consensus 628 ~i~~~gG~~~gvlY~iGg~~~sve~ynP~~~~w~~vt~s~~~~r~~~~~ 676 (806)
.+|++||.... -+...+.+..||+.+++|.++ +.+|.+|..+..
T Consensus 3 ~~~vfGG~~~~----~~~~~nd~~~~~~~~~~W~~~-~~~P~~R~~h~~ 46 (49)
T PF13415_consen 3 KLYVFGGYDDD----GGTRLNDVWVFDLDTNTWTRI-GDLPPPRSGHTA 46 (49)
T ss_pred EEEEECCcCCC----CCCEecCEEEEECCCCEEEEC-CCCCCCccceEE
Confidence 45666664310 022335889999999999988 667778876554
No 57
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=93.31 E-value=0.32 Score=48.46 Aligned_cols=91 Identities=21% Similarity=0.249 Sum_probs=64.5
Q ss_pred eEEEEEcCeeeEEEeeHHHHhcCC--HHHHHhhcCC--C-CCCCcceEEeCCCCHHHHHHHHhHHhcCccccCCCCchhH
Q 040529 349 DVNIYVESHGLVAQSHKIILSLWS--VPFAKMFTNG--M-SESYSSDVHLRDVSLKAFKIMLEFMYSGELNIEDSLDFGS 423 (806)
Q Consensus 349 DV~l~v~~~~~~~~aHr~ILaa~S--~yF~~mf~~~--~-~Es~~~~I~l~~v~~~~f~~lL~fiYtg~l~i~~~~n~~~ 423 (806)
-|.+.++|+. |..-.--|..+- ....+||.+. + .++.+..+-| |-++..|+-+|+|+..|++.....-+
T Consensus 10 ~vrlnigGk~--f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DRsp~yFepIlNyLr~Gq~~~~s~i~--- 83 (302)
T KOG1665|consen 10 MVRLNIGGKK--FCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DRSPKYFEPILNYLRDGQIPSLSDID--- 83 (302)
T ss_pred hheeecCCeE--EEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-ccCchhhHHHHHHHhcCceeecCCcc---
Confidence 3556677764 444444444443 3577899863 2 2333444444 56899999999999999988765455
Q ss_pred HHHHHHHHHHhhCchHHHHHHHH
Q 040529 424 LLLQLLILSDQFGVTLLHQECCK 446 (806)
Q Consensus 424 ~v~~Ll~~A~~l~l~~L~~~c~~ 446 (806)
+.++|+.|++|++-.|++..++
T Consensus 84 -~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 84 -CLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred -HHHHHHHhhHHhhHhHHhHHhh
Confidence 9999999999999999887666
No 58
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=93.20 E-value=0.54 Score=37.83 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=44.7
Q ss_pred EEEEEcCeeeEEEeeHHHHhcCCHHHHHhhcCCCCCCCcceEEeCCCCHHHHHHHHhHHhc
Q 040529 350 VNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHLRDVSLKAFKIMLEFMYS 410 (806)
Q Consensus 350 V~l~v~~~~~~~~aHr~ILaa~S~yF~~mf~~~~~Es~~~~I~l~~v~~~~f~~lL~fiYt 410 (806)
|+|+..|+. .|.+.+.++. .|..++.|+.+.-.+.. .|.+++++...++.+++|++.
T Consensus 3 v~L~SsDg~-~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQ-EFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSE-EEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCC-EEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 567776664 5999998875 89999999986333322 799999999999999999963
No 59
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.75 E-value=0.053 Score=58.56 Aligned_cols=91 Identities=18% Similarity=0.182 Sum_probs=68.8
Q ss_pred ccEEEEecCCCeEEEeeeeeecccCcccCCCCC-------CceEEeCCCCHHHHHHHHHhhccCcccCCCCCc---hhHH
Q 040529 209 SDMFFIVGTEEKLVPAHKVILQASGNFPLSLTG-------EGIVQLQEVIYPILHALLQFIYTGRTQISEPLL---GPLW 278 (806)
Q Consensus 209 sDv~~~v~~~~~~~~aHk~ILaarS~~F~~~~~-------~~~i~l~~v~~~~f~~lL~fiYtg~~~i~~~~~---~~ll 278 (806)
-|+....+.++..+.+|+++++|++++|..... ...+++.+.+++.++++..|+|+..-....+.. ..++
T Consensus 99 ~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~ 178 (297)
T KOG1987|consen 99 LPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDL 178 (297)
T ss_pred cChHHhhcccCcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhh
Confidence 444444433355699999999999999955422 233466689999999999999997765544444 3888
Q ss_pred HhhhhccchhhHHHHHHHHHh
Q 040529 279 ALSSQFQVMPLVKQCEETMER 299 (806)
Q Consensus 279 ~~A~~~~l~~L~~~C~~~l~~ 299 (806)
.+|..++.+.|+..|...+..
T Consensus 179 a~~f~~~~~~lk~~~~~~l~~ 199 (297)
T KOG1987|consen 179 AAAFKYKNRHLKLACMPVLLS 199 (297)
T ss_pred hhccccccHHHHHHHHHHHHH
Confidence 899999999999999998763
No 60
>smart00607 FTP eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain.
Probab=91.98 E-value=1.5 Score=42.24 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=55.5
Q ss_pred ecCCCCeeEEEecCCceeeEeeeeEeeecCC--cccceEEEEEEecCCCCe---EeeEEeecCcccccCCccceeeecCC
Q 040529 694 EDGHNCTWWMVDIGQDHQLMCNYYTLRMDGS--RAYIRYWNFQGSMDGKSW---TNLRVHENDQTMCKHGQFASWAVIGP 768 (806)
Q Consensus 694 y~~~~nsW~~vd~~~~~~~~p~~Y~~r~~~~--~~~lr~W~~~gs~dg~~W---~~l~~~~~~~~l~~~~~~~~~~i~~~ 768 (806)
++.+.+-|+.||++..+.+ ..=.|.+..+ ...++...+-.+++-... ..... .......+...++.+.+
T Consensus 46 T~~e~~PWW~VDL~~~~~V--~~V~I~NR~Dcc~~rl~~~eI~IG~s~~~~~~~n~~c~---~~~~~~~~~~~~~~c~~- 119 (151)
T smart00607 46 TEKRSNPWWRVDLLQYMTI--HSVTITNRGDCCGERITGARILIGNSLENGGINNPNCS---TGGLMAGGETKTFCCPP- 119 (151)
T ss_pred CCCCCCCeEEEeCCCeEEe--eEEEEecCCCCCCccccceEEEECCcccccCCcCcccC---CCceeCCCceEEEeCCC-
Confidence 6677889999999985333 3444444433 234666666554322111 10000 01111233445555542
Q ss_pred CCCcCeEEEEEEEeccCCCCCCCceEEEeceEEeee
Q 040529 769 NALRPFRFFRVVLMGPTADAANSWNFCICFLELYGY 804 (806)
Q Consensus 769 ~~~~~~r~fri~q~g~n~~~~~~~~l~l~~~e~~G~ 804 (806)
.-.=||.+|...|++ ..|.||.+|.||.
T Consensus 120 --~~~GRYV~i~Lpg~~------~~L~LCEVeV~~~ 147 (151)
T smart00607 120 --PMIGRYVTVYLPKPN------ESLILCEVEVNAL 147 (151)
T ss_pred --CCeeEEEEEEecCCC------ccEEEeEEEEccc
Confidence 135799999999843 3899999999985
No 61
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.66 E-value=1.2 Score=43.24 Aligned_cols=103 Identities=13% Similarity=0.187 Sum_probs=71.5
Q ss_pred EEEEcCeeeEEEeeHHHHhcCCHHHHHhhcC-CCCCCCcceEEeCCCCHHHHHHHHhHHhcCccc---------------
Q 040529 351 NIYVESHGLVAQSHKIILSLWSVPFAKMFTN-GMSESYSSDVHLRDVSLKAFKIMLEFMYSGELN--------------- 414 (806)
Q Consensus 351 ~l~v~~~~~~~~aHr~ILaa~S~yF~~mf~~-~~~Es~~~~I~l~~v~~~~f~~lL~fiYtg~l~--------------- 414 (806)
.|...++. .|.+-..++. .|..+.+++.. +..... ..|.|+.+....|..+|.|++.-.-.
T Consensus 8 kL~SsDG~-~f~ve~~~a~-~s~~i~~~~~~~~~~~~~-~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~ 84 (162)
T KOG1724|consen 8 KLESSDGE-IFEVEEEVAR-QSQTISAHMIEDGCADEN-DPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETD 84 (162)
T ss_pred EEEccCCc-eeehhHHHHH-HhHHHHHHHHHcCCCccC-CccccCccCHHHHHHHHHHHHHcccccccccccccccccCC
Confidence 34444443 4888777764 67777887764 222222 57999999999999999999873321
Q ss_pred cCCCCc-----hhHHHHHHHHHHHhhCchHHHHHHHHHHhhcCCCCC
Q 040529 415 IEDSLD-----FGSLLLQLLILSDQFGVTLLHQECCKLLLECFSEDS 456 (806)
Q Consensus 415 i~~~~n-----~~~~v~~Ll~~A~~l~l~~L~~~c~~~L~~~l~~~n 456 (806)
++..+- -...+.+|+.||++|.++.|.+.|++.+...+...+
T Consensus 85 i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgkt 131 (162)
T KOG1724|consen 85 IPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKT 131 (162)
T ss_pred ccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCC
Confidence 111000 013599999999999999999999999888765544
No 62
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=91.58 E-value=0.76 Score=50.44 Aligned_cols=86 Identities=15% Similarity=0.233 Sum_probs=63.9
Q ss_pred EEEEEcCeeeEEEeeHHHHhcCC--HHHHHhhcCCCCCCCcce--EEeCCCCHHHHHHHHhHHhcCccccCCCCchhHHH
Q 040529 350 VNIYVESHGLVAQSHKIILSLWS--VPFAKMFTNGMSESYSSD--VHLRDVSLKAFKIMLEFMYSGELNIEDSLDFGSLL 425 (806)
Q Consensus 350 V~l~v~~~~~~~~aHr~ILaa~S--~yF~~mf~~~~~Es~~~~--I~l~~v~~~~f~~lL~fiYtg~l~i~~~~n~~~~v 425 (806)
|.|.|+|+- |.-.+.-|+... .+|.+++++.+.-.+... |-| |=+|+.|..+|+|+-||++.+..... .
T Consensus 13 V~lNVGGri--F~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~g~~~----~ 85 (465)
T KOG2714|consen 13 VKLNVGGRI--FETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDASGVFP----E 85 (465)
T ss_pred EEEecCceE--EecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCccCch----h
Confidence 568888864 777777776655 699999988765444332 444 55899999999999999999865331 3
Q ss_pred HHHHHHHHhhCchHHHH
Q 040529 426 LQLLILSDQFGVTLLHQ 442 (806)
Q Consensus 426 ~~Ll~~A~~l~l~~L~~ 442 (806)
..+..-|.+|++..|..
T Consensus 86 ~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 86 RLLHDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhhhhcCcHHHHH
Confidence 34444899999998865
No 63
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.55 E-value=1.6 Score=39.81 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=70.4
Q ss_pred eEEEEEcCeeeEEEeeHHHHhcCCHHHHHhhcCCCCCCCcceEEeCCCCHHHHHHHHhHHhcCccccCCCCc--------
Q 040529 349 DVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHLRDVSLKAFKIMLEFMYSGELNIEDSLD-------- 420 (806)
Q Consensus 349 DV~l~v~~~~~~~~aHr~ILaa~S~yF~~mf~~~~~Es~~~~I~l~~v~~~~f~~lL~fiYtg~l~i~~~~n-------- 420 (806)
-+.|...++. .|.+.+.+ |-+|-..+.|+.. +.+.+ -.+..+.+...+|..+++|+-...-+.++++|
T Consensus 3 ~i~l~s~dge-~F~vd~~i-AerSiLikN~l~d-~~~~n-~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~ 78 (158)
T COG5201 3 MIELESIDGE-IFRVDENI-AERSILIKNMLCD-STACN-YPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSK 78 (158)
T ss_pred ceEEEecCCc-EEEehHHH-HHHHHHHHHHhcc-ccccC-CCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccC
Confidence 3555555543 47776655 4577777877753 22222 23556689999999999999654433332222
Q ss_pred ------------hhHHHHHHHHHHHhhCchHHHHHHHHHHhhcCCCCC
Q 040529 421 ------------FGSLLLQLLILSDQFGVTLLHQECCKLLLECFSEDS 456 (806)
Q Consensus 421 ------------~~~~v~~Ll~~A~~l~l~~L~~~c~~~L~~~l~~~n 456 (806)
-.++++++..+|++|.++.|.+.||+.+.+.+....
T Consensus 79 p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkS 126 (158)
T COG5201 79 PSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKS 126 (158)
T ss_pred CccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCC
Confidence 124688999999999999999999998887766543
No 64
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=89.13 E-value=0.55 Score=35.66 Aligned_cols=18 Identities=0% Similarity=-0.049 Sum_probs=15.4
Q ss_pred CceeEecCCCCcEEEecc
Q 040529 648 GEHPWVNPVLAKRINITA 665 (806)
Q Consensus 648 ~sve~ynP~~~~w~~vt~ 665 (806)
..++.||+.+++|..+++
T Consensus 30 ~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 30 NDVWVFDTETNQWTELSP 47 (49)
T ss_pred ceeEEEECCCCEEeecCC
Confidence 489999999999988754
No 65
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=88.51 E-value=1.2 Score=51.72 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=44.5
Q ss_pred CceeEecCCCCcEEEecc--CCCCCcCC------CCeEEeecccCCcc--ccCCeeecCCCCeeEEEecCC
Q 040529 648 GEHPWVNPVLAKRINITA--SSPISRYT------DPKALASRTYQGLS--FAGPRMEDGHNCTWWMVDIGQ 708 (806)
Q Consensus 648 ~sve~ynP~~~~w~~vt~--s~~~~r~~------~~~~~v~~g~~g~~--~~~~~~y~~~~nsW~~vd~~~ 708 (806)
..+..||+.+++|....+ .+|.+|.. +-++++.||..... .++..+||..+++|..++...
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g 209 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQG 209 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCC
Confidence 488999999999965433 33555633 35789999976554 355667999999999988754
No 66
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=88.40 E-value=0.47 Score=35.44 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=26.6
Q ss_pred CCCeEEeecccCCc--cccCCeeecCCCCeeEEEec
Q 040529 673 TDPKALASRTYQGL--SFAGPRMEDGHNCTWWMVDI 706 (806)
Q Consensus 673 ~~~~~~v~~g~~g~--~~~~~~~y~~~~nsW~~vd~ 706 (806)
.++++|++||+.+. .....+.||+.+|+|..+..
T Consensus 10 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 10 VGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp ETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred ECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 46789999999772 22556679999999998763
No 67
>PF13964 Kelch_6: Kelch motif
Probab=88.24 E-value=0.57 Score=35.67 Aligned_cols=36 Identities=14% Similarity=-0.011 Sum_probs=26.2
Q ss_pred CCCeEEeecccCC-c-cccCCeeecCCCCeeEEEecCC
Q 040529 673 TDPKALASRTYQG-L-SFAGPRMEDGHNCTWWMVDIGQ 708 (806)
Q Consensus 673 ~~~~~~v~~g~~g-~-~~~~~~~y~~~~nsW~~vd~~~ 708 (806)
.++++|+.||+.+ . .....++||+++++|..++..+
T Consensus 10 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 10 VGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred ECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 4567888888765 2 2355678999999999986443
No 68
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=87.95 E-value=1.2 Score=45.95 Aligned_cols=72 Identities=14% Similarity=0.173 Sum_probs=50.7
Q ss_pred ceEEEecccC--------------CceeEecCCCCcEEEeccCC--CCC-c-----CCCCeEEeecccCCccc---cCCe
Q 040529 638 GVLYFAGTSY--------------GEHPWVNPVLAKRINITASS--PIS-R-----YTDPKALASRTYQGLSF---AGPR 692 (806)
Q Consensus 638 gvlY~iGg~~--------------~sve~ynP~~~~w~~vt~s~--~~~-r-----~~~~~~~v~~g~~g~~~---~~~~ 692 (806)
+.+|+.||.. .++...|.++.-|....... |.. | ..++++|+.|||+|+-. ++-.
T Consensus 192 ~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy 271 (392)
T KOG4693|consen 192 GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLY 271 (392)
T ss_pred ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhccee
Confidence 4778888843 26678899999886542221 222 3 36789999999998743 4445
Q ss_pred eecCCCCeeEEEecCCc
Q 040529 693 MEDGHNCTWWMVDIGQD 709 (806)
Q Consensus 693 ~y~~~~nsW~~vd~~~~ 709 (806)
.+||.+..|..|..+.+
T Consensus 272 ~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 272 CFDPKTSMWSVISVRGK 288 (392)
T ss_pred ecccccchheeeeccCC
Confidence 69999999999987543
No 69
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=87.91 E-value=0.31 Score=36.90 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=13.7
Q ss_pred cCCceeEecCCCCcEEEeccCCC
Q 040529 646 SYGEHPWVNPVLAKRINITASSP 668 (806)
Q Consensus 646 ~~~sve~ynP~~~~w~~vt~s~~ 668 (806)
..+.++.||+.+++|..+ +++|
T Consensus 27 ~~~d~~~~d~~~~~W~~~-~~~P 48 (49)
T PF13418_consen 27 PLNDLWIFDIETNTWTRL-PSMP 48 (49)
T ss_dssp E---EEEEETTTTEEEE---SS-
T ss_pred ccCCEEEEECCCCEEEEC-CCCC
Confidence 345889999999999888 4443
No 70
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=86.98 E-value=1.5 Score=37.96 Aligned_cols=73 Identities=11% Similarity=0.154 Sum_probs=53.2
Q ss_pred EEEEecCCCeEEEeeeeeecccCcc---------cCCCCCCceEEeCCCCHHHHHHHHHhh-----ccCc------ccCC
Q 040529 211 MFFIVGTEEKLVPAHKVILQASGNF---------PLSLTGEGIVQLQEVIYPILHALLQFI-----YTGR------TQIS 270 (806)
Q Consensus 211 v~~~v~~~~~~~~aHk~ILaarS~~---------F~~~~~~~~i~l~~v~~~~f~~lL~fi-----Ytg~------~~i~ 270 (806)
|+++.+| +.+|-.-|-+-. -|+- -..+....+|.+++++..+++.+.+|+ |++. .+|+
T Consensus 19 VkLvS~D-dhefiikre~Am-tSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ip 96 (112)
T KOG3473|consen 19 VKLVSSD-DHEFIIKREHAM-TSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIP 96 (112)
T ss_pred eEeecCC-CcEEEEeehhhh-hhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCC
Confidence 6666664 766666554432 2322 244567789999999999999999987 6665 3477
Q ss_pred CCCchhHHHhhhhcc
Q 040529 271 EPLLGPLWALSSQFQ 285 (806)
Q Consensus 271 ~~~~~~ll~~A~~~~ 285 (806)
++.+.+||.+|+.+.
T Consensus 97 pemaleLL~aAn~Le 111 (112)
T KOG3473|consen 97 PEMALELLMAANYLE 111 (112)
T ss_pred HHHHHHHHHHhhhhc
Confidence 888999999998875
No 71
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=85.27 E-value=2 Score=42.55 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=79.4
Q ss_pred eEEEEEe--ecCceEEEEecCCCCcccccccCCCCcEEEEEcccCcceeEEEECCeEE------EeccCCcccCccccce
Q 040529 32 CVAFEAF--AHNDVTVVFRENVGSQHYHYKRDNSPHYTVIIGSNRNRRLKIEVNGKTV------VDVAGVGLCCSSAFQS 103 (806)
Q Consensus 32 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~n~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 103 (806)
.+.|++| ...++-|.|+.. +.....+...-|++-|............+|... .......-...++..+
T Consensus 56 ~l~~d~k~~~~~~sGi~~r~~----~~~~~~~~~~gy~~~i~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~W~~ 131 (185)
T PF06439_consen 56 ELEVDFKITPGGNSGIFFRAQ----SPGDGQDWNNGYEFQIDNSGGGTGLPNSTGSLYDEPPWQLEPSVNVAIPPGEWNT 131 (185)
T ss_dssp EEEEEEEE-TT-EEEEEEEES----SECCSSGGGTSEEEEEE-TTTCSTTTTSTTSBTTTB-TCB-SSS--S--TTSEEE
T ss_pred EEEEEEEECCCCCeEEEEEec----cccCCCCcceEEEEEEECCCCccCCCCccceEEEeccccccccccccCCCCceEE
Confidence 4666666 457899999877 222334556778888877655522222234332 2233344456889999
Q ss_pred eeEEEeCCEEEEec-ccCCCcceeEEEeCCCCCc---ceeEEEeecccccccceeecc
Q 040529 104 YWISIYDGLISIGK-GRYPFQNLVFQWLDSSPNC---SVRYVGLSSWDKHVGYRNVNV 157 (806)
Q Consensus 104 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~gyr~~~~ 157 (806)
+=|...+..|+|=. |. .++++.|+.... .-.+|||-+++..+-|||+.+
T Consensus 132 ~~I~~~g~~i~v~vnG~-----~v~~~~d~~~~~~~~~~G~Igl~~~~~~~~frNi~I 184 (185)
T PF06439_consen 132 VRIVVKGNRITVWVNGK-----PVADFTDPSFPYSNPTKGPIGLQTHGSEVQFRNIKI 184 (185)
T ss_dssp EEEEEETTEEEEEETTE-----EEEEEETTSHHHHHHSSBEEEEECSSSTEEEEEEEE
T ss_pred EEEEEECCEEEEEECCE-----EEEEEEcCCCCCCCCCceEEEEEeCCCeEEEEEEEE
Confidence 99999999999977 55 569999999744 889999999999999999975
No 72
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=85.06 E-value=0.48 Score=50.84 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=58.8
Q ss_pred ceeEEEEEcCeeeEEEeeHHHHhcCCHHHHHhhcCCCCCCCcceEEeCCCCHHHHHHHHhHHhcCccccCCCCchhHHHH
Q 040529 347 YADVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHLRDVSLKAFKIMLEFMYSGELNIEDSLDFGSLLL 426 (806)
Q Consensus 347 ~sDV~l~v~~~~~~~~aHr~ILaa~S~yF~~mf~~~~~Es~~~~I~l~~v~~~~f~~lL~fiYtg~l~i~~~~n~~~~v~ 426 (806)
..|+++....+. .|.|||+.|+++|.+|..-+..-+ ....+|.-..+-+.+|..+++|+|-..-.+-. +.--
T Consensus 149 ~~di~f~~q~g~-~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~lyl~~na~~~-----~qyn 220 (516)
T KOG0511|consen 149 CHDIDFLQQEGA-NFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLYLNTNAEWK-----DQYN 220 (516)
T ss_pred ccchHHHhhccc-cccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHHHhhhhhhh-----hHHH
Confidence 358887776553 489999999999998865444322 12234544456789999999999976222211 1246
Q ss_pred HHHHHHHhhCchHHHH
Q 040529 427 QLLILSDQFGVTLLHQ 442 (806)
Q Consensus 427 ~Ll~~A~~l~l~~L~~ 442 (806)
+|+.+..+|+++.|..
T Consensus 221 allsi~~kF~~e~l~~ 236 (516)
T KOG0511|consen 221 ALLSIEVKFSKEKLSL 236 (516)
T ss_pred HHHhhhhhccHHHhHH
Confidence 7778888887766644
No 73
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=83.57 E-value=3 Score=45.72 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=53.2
Q ss_pred CCcccccccccccccceeeecCCC--C-ceEEEecccCCceeEecCCCCcEEEeccCC--CCCcC-------CCCeEEee
Q 040529 613 NQSVRFQHRRSSFKELQYICDGDS--N-GVLYFAGTSYGEHPWVNPVLAKRINITASS--PISRY-------TDPKALAS 680 (806)
Q Consensus 613 ~~~~r~~~r~~~~~e~i~~~gG~~--~-gvlY~iGg~~~sve~ynP~~~~w~~vt~s~--~~~r~-------~~~~~~v~ 680 (806)
-+++|..+|...++..++++||.. + ..+|+ +.+.+||-.+-+|.++.++- |++|+ ..+.|++-
T Consensus 174 ~PS~RSGHRMvawK~~lilFGGFhd~nr~y~Yy-----NDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 174 GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYY-----NDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred CCCCCccceeEEeeeeEEEEcceecCCCceEEe-----eeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEE
Confidence 378899999888888899999952 2 25554 68999999999999988765 67774 36778888
Q ss_pred cccCC
Q 040529 681 RTYQG 685 (806)
Q Consensus 681 ~g~~g 685 (806)
|||-.
T Consensus 249 GGYsK 253 (521)
T KOG1230|consen 249 GGYSK 253 (521)
T ss_pred cchhH
Confidence 99853
No 74
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=81.71 E-value=20 Score=39.58 Aligned_cols=90 Identities=17% Similarity=0.164 Sum_probs=51.3
Q ss_pred Cccccccccc--ccccceeeecCCCCceEEEecc---cCCceeEecCCCCcEEEeccC-CCCCcCCCCeE-------Eee
Q 040529 614 QSVRFQHRRS--SFKELQYICDGDSNGVLYFAGT---SYGEHPWVNPVLAKRINITAS-SPISRYTDPKA-------LAS 680 (806)
Q Consensus 614 ~~~r~~~r~~--~~~e~i~~~gG~~~gvlY~iGg---~~~sve~ynP~~~~w~~vt~s-~~~~r~~~~~~-------~v~ 680 (806)
+++|..+... .-++-++++||. +| -|. .++..-.||...++|..+.+. .|.+|+.+..+ ++.
T Consensus 64 PspRsn~sl~~nPekeELilfGGE----f~-ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~f 138 (521)
T KOG1230|consen 64 PSPRSNPSLFANPEKEELILFGGE----FY-NGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLF 138 (521)
T ss_pred CCCCCCcceeeccCcceeEEecce----ee-cceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEe
Confidence 4555444322 235667778883 22 132 356778899999999877543 45667655443 444
Q ss_pred cccCCc----cc---cCCeeecCCCCeeEEEecCC
Q 040529 681 RTYQGL----SF---AGPRMEDGHNCTWWMVDIGQ 708 (806)
Q Consensus 681 ~g~~g~----~~---~~~~~y~~~~nsW~~vd~~~ 708 (806)
||-... .+ .+-+..+-.+++|.++.++.
T Consensus 139 GGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g 173 (521)
T KOG1230|consen 139 GGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG 173 (521)
T ss_pred ccccCCcchhhhhhhhheeeeeeccchheeeccCC
Confidence 442111 11 11123777788888888765
No 75
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=81.40 E-value=2 Score=32.52 Aligned_cols=34 Identities=21% Similarity=0.146 Sum_probs=24.9
Q ss_pred CCCeEEeeccc---CCc-cccCCeeecCCCCeeEEEec
Q 040529 673 TDPKALASRTY---QGL-SFAGPRMEDGHNCTWWMVDI 706 (806)
Q Consensus 673 ~~~~~~v~~g~---~g~-~~~~~~~y~~~~nsW~~vd~ 706 (806)
.++++|+.||+ .+. ...+...||.++++|..+..
T Consensus 10 ~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 10 LDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred ECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 46788888888 222 23556679999999998764
No 76
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=81.28 E-value=3.1 Score=35.17 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhCchHHHHHHHHHHhhcCCCCC
Q 040529 424 LLLQLLILSDQFGVTLLHQECCKLLLECFSEDS 456 (806)
Q Consensus 424 ~v~~Ll~~A~~l~l~~L~~~c~~~L~~~l~~~n 456 (806)
.+.+|+.+|++|+++.|.+.|++.+...+...+
T Consensus 15 ~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks 47 (78)
T PF01466_consen 15 ELFDLLNAANYLDIKGLLDLCCKYIANMIKGKS 47 (78)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCC
Confidence 399999999999999999999999998877655
No 77
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=81.28 E-value=1.3 Score=39.68 Aligned_cols=54 Identities=9% Similarity=0.166 Sum_probs=39.2
Q ss_pred cEEEEecCCCeEEEeeeeeecccCcccCCC----C----CCceEEeCCCCHHHHHHHHHhhccC
Q 040529 210 DMFFIVGTEEKLVPAHKVILQASGNFPLSL----T----GEGIVQLQEVIYPILHALLQFIYTG 265 (806)
Q Consensus 210 Dv~~~v~~~~~~~~aHk~ILaarS~~F~~~----~----~~~~i~l~~v~~~~f~~lL~fiYtg 265 (806)
.++|+.. +|+.|.+.+.+. ..|..++.+ + ....|.+++|+..+++.+++|++-.
T Consensus 3 ~v~L~S~-Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h 64 (104)
T smart00512 3 YIKLISS-DGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHH 64 (104)
T ss_pred eEEEEeC-CCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHc
Confidence 3667666 488999988865 356665321 1 1147999999999999999999854
No 78
>smart00612 Kelch Kelch domain.
Probab=77.38 E-value=1.8 Score=31.74 Aligned_cols=32 Identities=9% Similarity=0.105 Sum_probs=22.2
Q ss_pred EEeecccCCc-cccCCeeecCCCCeeEEEecCC
Q 040529 677 ALASRTYQGL-SFAGPRMEDGHNCTWWMVDIGQ 708 (806)
Q Consensus 677 ~~v~~g~~g~-~~~~~~~y~~~~nsW~~vd~~~ 708 (806)
+|++||+.+. .....++||+.+++|..++...
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~ 34 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMP 34 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccCCCCC
Confidence 6777776542 2244567999999999876443
No 79
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=74.71 E-value=2 Score=48.04 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=53.8
Q ss_pred CCCcccccccccccccceeeecCCCCceEEEecccCCceeEecCCCCcEEEec--cC-CCCCc-----CCCCeEEeeccc
Q 040529 612 SNQSVRFQHRRSSFKELQYICDGDSNGVLYFAGTSYGEHPWVNPVLAKRINIT--AS-SPISR-----YTDPKALASRTY 683 (806)
Q Consensus 612 ~~~~~r~~~r~~~~~e~i~~~gG~~~gvlY~iGg~~~sve~ynP~~~~w~~vt--~s-~~~~r-----~~~~~~~v~~g~ 683 (806)
+.+.+|..+|.-..+|+++++||-++|++ +....||..+++|.--+ .- +|.+. ..+-++++.||-
T Consensus 28 PvPrpRHGHRAVaikELiviFGGGNEGii-------DELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGM 100 (830)
T KOG4152|consen 28 PVPRPRHGHRAVAIKELIVIFGGGNEGII-------DELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGM 100 (830)
T ss_pred CCCCccccchheeeeeeEEEecCCcccch-------hhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccE
Confidence 34566777887788999999999665532 46678999999986210 01 11111 122357888775
Q ss_pred CCccccCCeeecCCCCeeEE
Q 040529 684 QGLSFAGPRMEDGHNCTWWM 703 (806)
Q Consensus 684 ~g~~~~~~~~y~~~~nsW~~ 703 (806)
.......+..|.-+...|.=
T Consensus 101 vEYGkYsNdLYELQasRWeW 120 (830)
T KOG4152|consen 101 VEYGKYSNDLYELQASRWEW 120 (830)
T ss_pred eeeccccchHHHhhhhhhhH
Confidence 44444556667777777764
No 80
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=72.33 E-value=4.8 Score=32.29 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=37.9
Q ss_pred EEEEecCCCeEEEeeeeeecccCcccCC----CCCCc-eEEeCCCCHHHHHHHHHhhcc
Q 040529 211 MFFIVGTEEKLVPAHKVILQASGNFPLS----LTGEG-IVQLQEVIYPILHALLQFIYT 264 (806)
Q Consensus 211 v~~~v~~~~~~~~aHk~ILaarS~~F~~----~~~~~-~i~l~~v~~~~f~~lL~fiYt 264 (806)
|+|+..| |+.|.+-+.++. .|..++. ..... .|.|++++..+|+.+++|++-
T Consensus 3 v~L~SsD-g~~f~V~~~~a~-~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSD-GQEFEVSREAAK-QSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETT-SEEEEEEHHHHT-TSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCC-CCEEEeeHHHHH-HhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHHh
Confidence 6777764 999999887665 5666532 22222 599999999999999999873
No 81
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=71.85 E-value=2.5 Score=45.62 Aligned_cols=131 Identities=18% Similarity=0.268 Sum_probs=98.1
Q ss_pred EEEeeHHHHhcCCHHHHHhhcCCCCCCCcceEEeCCCCHHHHHHHHhHHhcCccccCCCCchhHHHHHHHHHHHhhCchH
Q 040529 360 VAQSHKIILSLWSVPFAKMFTNGMSESYSSDVHLRDVSLKAFKIMLEFMYSGELNIEDSLDFGSLLLQLLILSDQFGVTL 439 (806)
Q Consensus 360 ~~~aHr~ILaa~S~yF~~mf~~~~~Es~~~~I~l~~v~~~~f~~lL~fiYtg~l~i~~~~n~~~~v~~Ll~~A~~l~l~~ 439 (806)
.+.+|+.+|...|+.|..+....-..+....+.+..++...+..+.+++|.. ++. .........++.+...+.++.
T Consensus 37 ~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek---~e~~~~~ihll~~~~~~~v~~ 112 (319)
T KOG1778|consen 37 LIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEK---HEMVFFDIHLLALSHVYVVPQ 112 (319)
T ss_pred hhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhh---hHHHHHHHHHHhhhhhhhccC
Confidence 4999999999999999888766533334456677788889999999999998 332 222344677777777888888
Q ss_pred HHHHHHHHHhh-cCCCCCcHHHHHHHhhhcCCHHHHHHHHHHHHhchhhhhccccccc
Q 040529 440 LHQECCKLLLE-CFSEDSVCPILQVVTPISSCKLIEETCERKFALHFDYCTTASLDFV 496 (806)
Q Consensus 440 L~~~c~~~L~~-~l~~~n~~~~l~~~a~~~~~~~L~~~~~~~I~~nf~~l~~~~~~F~ 496 (806)
++..|...+.. .++..+ ....+..+..+....|...+...+...|... .+++...
T Consensus 113 ~~~d~~~~~~~~~~~~r~-~flvl~~~~~~~~~~lr~a~hss~~~~~~~H-~~t~~~~ 168 (319)
T KOG1778|consen 113 PKADCDPILECGLFDKRN-VFLVLQLAEHCDFSDLRRAKHSSIMLLFDLH-LQTEKWF 168 (319)
T ss_pred ccccCCccccchhhhhHH-HHHHHHHHHhcccchHHHHHHHHHHHHHHHH-hcccCce
Confidence 88888887766 455556 5566667788899999999999999988887 5544433
No 82
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=71.78 E-value=8.7 Score=39.83 Aligned_cols=72 Identities=18% Similarity=0.205 Sum_probs=41.8
Q ss_pred CceEEEecccCC-------ceeEecCCCCcEEEeccCC--CCCc------CCCCeEEeecccCC--ccccCCeeecCCCC
Q 040529 637 NGVLYFAGTSYG-------EHPWVNPVLAKRINITASS--PISR------YTDPKALASRTYQG--LSFAGPRMEDGHNC 699 (806)
Q Consensus 637 ~gvlY~iGg~~~-------sve~ynP~~~~w~~vt~s~--~~~r------~~~~~~~v~~g~~g--~~~~~~~~y~~~~n 699 (806)
||.+|..||..+ ...+|||++..|..+.+.- |.+| ..++++|..||-.. ....++.-|.+..+
T Consensus 250 ng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP~~~~~~Spt~~~G~~~ 329 (392)
T KOG4693|consen 250 NGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSPLPCHPLSPTNYNGMIS 329 (392)
T ss_pred cceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCCCCCCCCCccccCCCCC
Confidence 457788887654 6779999999997765432 2222 34567777776321 11134444555444
Q ss_pred eeEEEecCC
Q 040529 700 TWWMVDIGQ 708 (806)
Q Consensus 700 sW~~vd~~~ 708 (806)
.--.+|+..
T Consensus 330 ~~~LiD~SD 338 (392)
T KOG4693|consen 330 PSGLIDLSD 338 (392)
T ss_pred ccccccccc
Confidence 444454443
No 83
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=68.38 E-value=6.5 Score=38.18 Aligned_cols=87 Identities=9% Similarity=0.126 Sum_probs=60.2
Q ss_pred EEEEecCCCeEEEeeeeeecccCcccC----CCC-CC--ceEEeCCCCHHHHHHHHHhhccCccc---------------
Q 040529 211 MFFIVGTEEKLVPAHKVILQASGNFPL----SLT-GE--GIVQLQEVIYPILHALLQFIYTGRTQ--------------- 268 (806)
Q Consensus 211 v~~~v~~~~~~~~aHk~ILaarS~~F~----~~~-~~--~~i~l~~v~~~~f~~lL~fiYtg~~~--------------- 268 (806)
+.|... +|+.|.+-..+.. .|.... ..+ .. ..|.|++|...+|..++.|++-..-.
T Consensus 7 ikL~Ss-DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~ 84 (162)
T KOG1724|consen 7 IKLESS-DGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETD 84 (162)
T ss_pred EEEEcc-CCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCC
Confidence 344444 3777776655433 333331 111 11 37999999999999999999974321
Q ss_pred ----------CCCCCchhHHHhhhhccchhhHHHHHHHHHh
Q 040529 269 ----------ISEPLLGPLWALSSQFQVMPLVKQCEETMER 299 (806)
Q Consensus 269 ----------i~~~~~~~ll~~A~~~~l~~L~~~C~~~l~~ 299 (806)
+....+.+|+.||.+++++.|...|++.+..
T Consensus 85 i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~ 125 (162)
T KOG1724|consen 85 IPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVAN 125 (162)
T ss_pred ccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 2234678999999999999999999998754
No 84
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=64.39 E-value=16 Score=35.22 Aligned_cols=89 Identities=11% Similarity=0.046 Sum_probs=68.1
Q ss_pred CccEEEEecCCCeEEEeeeeeecccCcccC-----CC------CCCceEEeCCCCHHHHHHHHHhhccCcccCCCCCchh
Q 040529 208 LSDMFFIVGTEEKLVPAHKVILQASGNFPL-----SL------TGEGIVQLQEVIYPILHALLQFIYTGRTQISEPLLGP 276 (806)
Q Consensus 208 ~sDv~~~v~~~~~~~~aHk~ILaarS~~F~-----~~------~~~~~i~l~~v~~~~f~~lL~fiYtg~~~i~~~~~~~ 276 (806)
-.-|.|-|| |..|-.-|.-|..-+.-|. .+ ....---+-|-+|.-|--+|.|+=.|++.++.-.-..
T Consensus 20 s~wVRlNVG--Gt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeG 97 (210)
T KOG2715|consen 20 SLWVRLNVG--GTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEG 97 (210)
T ss_pred eEEEEEecC--CEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhc
Confidence 355778886 8899999999987774441 11 1122223336789999999999999999999866788
Q ss_pred HHHhhhhccchhhHHHHHHHHH
Q 040529 277 LWALSSQFQVMPLVKQCEETME 298 (806)
Q Consensus 277 ll~~A~~~~l~~L~~~C~~~l~ 298 (806)
+|.-|+.|.++.|++...+-+.
T Consensus 98 vL~EAefyn~~~li~likd~i~ 119 (210)
T KOG2715|consen 98 VLEEAEFYNDPSLIQLIKDRIQ 119 (210)
T ss_pred cchhhhccCChHHHHHHHHHHH
Confidence 9999999999999988777664
No 85
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=62.39 E-value=14 Score=40.88 Aligned_cols=85 Identities=20% Similarity=0.307 Sum_probs=62.3
Q ss_pred EEEEecCCCeEEEeeeeeecccC--cccCC--------CCCC-ceEEeCCCCHHHHHHHHHhhccCcccCCCCCchhHHH
Q 040529 211 MFFIVGTEEKLVPAHKVILQASG--NFPLS--------LTGE-GIVQLQEVIYPILHALLQFIYTGRTQISEPLLGPLWA 279 (806)
Q Consensus 211 v~~~v~~~~~~~~aHk~ILaarS--~~F~~--------~~~~-~~i~l~~v~~~~f~~lL~fiYtg~~~i~~~~~~~ll~ 279 (806)
|.|-|| |+.|..-+--|+--. .||.. +... ..|.| |=+|+.|.-+|+|+=||++++..-....++.
T Consensus 13 V~lNVG--GriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~g~~~~~llh 89 (465)
T KOG2714|consen 13 VKLNVG--GRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDASGVFPERLLH 89 (465)
T ss_pred EEEecC--ceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence 778897 899999998887554 45522 1222 22433 6789999999999999999997666666666
Q ss_pred -hhhhccchhhHH---HHHHHHH
Q 040529 280 -LSSQFQVMPLVK---QCEETME 298 (806)
Q Consensus 280 -~A~~~~l~~L~~---~C~~~l~ 298 (806)
-|.+|++.+|.. +|+..+.
T Consensus 90 dEA~fYGl~~llrrl~~~~~~F~ 112 (465)
T KOG2714|consen 90 DEAMFYGLTPLLRRLTLCEELFD 112 (465)
T ss_pred hhhhhcCcHHHHHHhhcCccccc
Confidence 999999999876 4554443
No 86
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=59.40 E-value=33 Score=39.85 Aligned_cols=102 Identities=20% Similarity=0.286 Sum_probs=67.1
Q ss_pred ecCCCCeeEEEecCCceeeEeeeeEeeecCCc--ccceEEEEEEecCCCCeEeeEEeecCcccccCCccceeeecCCCCC
Q 040529 694 EDGHNCTWWMVDIGQDHQLMCNYYTLRMDGSR--AYIRYWNFQGSMDGKSWTNLRVHENDQTMCKHGQFASWAVIGPNAL 771 (806)
Q Consensus 694 y~~~~nsW~~vd~~~~~~~~p~~Y~~r~~~~~--~~lr~W~~~gs~dg~~W~~l~~~~~~~~l~~~~~~~~~~i~~~~~~ 771 (806)
.++....|.+||+-..|.+-.-.-.-|++++. .+-+.++++++-+|..|..-+....-..+ ||+..|..+-- ...
T Consensus 73 v~~~~~E~LQvdl~~~hlit~V~TQGR~~~G~G~Efa~~y~I~Y~Rpg~~Wi~wk~r~g~evi--~gN~dt~~~v~-r~L 149 (807)
T KOG1094|consen 73 VNSKSKEYLQVDLQRLHLITSVETQGRHAGGLGKEFARAYKIRYSRPGLRWISWKDRWGQEVI--PGNEDTEGVVL-RDL 149 (807)
T ss_pred cCccchhheEEeeeceEEEEEeeeccccCCCccceehhheeeeeccCcchheeeccccCceec--CCCCCcchhhh-hhc
Confidence 45667889999998876665555566777655 67999999999999999876543333333 77777777531 122
Q ss_pred c---CeEEEEEEEeccCCCCCCCceEEEeceEEeee
Q 040529 772 R---PFRFFRVVLMGPTADAANSWNFCICFLELYGY 804 (806)
Q Consensus 772 ~---~~r~fri~q~g~n~~~~~~~~l~l~~~e~~G~ 804 (806)
+ -.|.+|+.-...++ ...|+. .|+||=
T Consensus 150 ~ppivAr~vRf~P~s~~~-----rtVCmR-vEi~GC 179 (807)
T KOG1094|consen 150 DPPIVARRVRFVPVSDRT-----RTVCMR-VELYGC 179 (807)
T ss_pred CchhhheeEEEEeccCCc-----ceEEEE-EEEecc
Confidence 3 35666666443333 345543 799984
No 87
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=58.90 E-value=34 Score=39.69 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=55.0
Q ss_pred CcccccccccccccceeeecCCCCceEEEecccCCceeEecCCCCcEEEeccC--CCCCcCCCC------eEEeecccC-
Q 040529 614 QSVRFQHRRSSFKELQYICDGDSNGVLYFAGTSYGEHPWVNPVLAKRINITAS--SPISRYTDP------KALASRTYQ- 684 (806)
Q Consensus 614 ~~~r~~~r~~~~~e~i~~~gG~~~gvlY~iGg~~~sve~ynP~~~~w~~vt~s--~~~~r~~~~------~~~v~~g~~- 684 (806)
+.+|..+......+.+|++||... .+...+.+..||+.+.+|.++... .|.+|+.+. ++++++|+.
T Consensus 161 P~~r~~Hs~~~~g~~l~vfGG~~~-----~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~ 235 (482)
T KOG0379|consen 161 PPPRAGHSATVVGTKLVVFGGIGG-----TGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDD 235 (482)
T ss_pred CCCcccceEEEECCEEEEECCccC-----cccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecccc
Confidence 455555555555677777777422 122456899999999999866543 345575544 457777765
Q ss_pred Cccc-cCCeeecCCCCeeEEEe
Q 040529 685 GLSF-AGPRMEDGHNCTWWMVD 705 (806)
Q Consensus 685 g~~~-~~~~~y~~~~nsW~~vd 705 (806)
+... .+....|-.+.+|..+.
T Consensus 236 ~~~~l~D~~~ldl~~~~W~~~~ 257 (482)
T KOG0379|consen 236 GDVYLNDVHILDLSTWEWKLLP 257 (482)
T ss_pred CCceecceEeeecccceeeecc
Confidence 3333 44445777788888554
No 88
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=58.86 E-value=28 Score=33.61 Aligned_cols=102 Identities=15% Similarity=0.013 Sum_probs=71.9
Q ss_pred CCCceeEEEEEcCeeeEEEeeHHHHhcCCHHHHHhhcCCCCC----CCcceEEeCCCCHHHHHHHHhHHhcCccccCCCC
Q 040529 344 NCEYADVNIYVESHGLVAQSHKIILSLWSVPFAKMFTNGMSE----SYSSDVHLRDVSLKAFKIMLEFMYSGELNIEDSL 419 (806)
Q Consensus 344 ~~~~sDV~l~v~~~~~~~~aHr~ILaa~S~yF~~mf~~~~~E----s~~~~I~l~~v~~~~f~~lL~fiYtg~l~i~~~~ 419 (806)
.|.-.=|.+.|+|.- |..-|.-|.--+.-|..-|-..-.+ ....--.+-|=+|..|-.+|+|+-.|++.++...
T Consensus 17 ~g~s~wVRlNVGGt~--f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~ 94 (210)
T KOG2715|consen 17 NGVSLWVRLNVGGTV--FLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLS 94 (210)
T ss_pred CCceEEEEEecCCEE--EEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhh
Confidence 344455677788853 8888888887775565554332211 1122234446689999999999999999887632
Q ss_pred chhHHHHHHHHHHHhhCchHHHHHHHHHHhhcC
Q 040529 420 DFGSLLLQLLILSDQFGVTLLHQECCKLLLECF 452 (806)
Q Consensus 420 n~~~~v~~Ll~~A~~l~l~~L~~~c~~~L~~~l 452 (806)
-..+|.-|++|.++.|.++..+.|.+..
T Consensus 95 -----eeGvL~EAefyn~~~li~likd~i~dRd 122 (210)
T KOG2715|consen 95 -----EEGVLEEAEFYNDPSLIQLIKDRIQDRD 122 (210)
T ss_pred -----hhccchhhhccCChHHHHHHHHHHHHHh
Confidence 3678899999999999998888887643
No 89
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=57.94 E-value=24 Score=35.70 Aligned_cols=84 Identities=15% Similarity=0.085 Sum_probs=61.4
Q ss_pred ccEEEEecCCCeEEEeeeeeecccCcc------cC------CCCCCceEEeCCCCHHHHHHHHHhhccCcccCC-CCCch
Q 040529 209 SDMFFIVGTEEKLVPAHKVILQASGNF------PL------SLTGEGIVQLQEVIYPILHALLQFIYTGRTQIS-EPLLG 275 (806)
Q Consensus 209 sDv~~~v~~~~~~~~aHk~ILaarS~~------F~------~~~~~~~i~l~~v~~~~f~~lL~fiYtg~~~i~-~~~~~ 275 (806)
+-|.+.+| |++|..-.--|--|-|= |. .+..+..+ +-|-+|.-|+-+|.|+-.|.++.. .-+..
T Consensus 9 ~~vrlnig--Gk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~-lIDRsp~yFepIlNyLr~Gq~~~~s~i~~l 85 (302)
T KOG1665|consen 9 SMVRLNIG--GKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAV-LIDRSPKYFEPILNYLRDGQIPSLSDIDCL 85 (302)
T ss_pred hhheeecC--CeEEEEeehhhcccCchHHHHHHHccCCCccccccCceE-EEccCchhhHHHHHHHhcCceeecCCccHH
Confidence 34677785 78887777666666443 31 12333334 346789999999999999998754 56789
Q ss_pred hHHHhhhhccchhhHHHHHH
Q 040529 276 PLWALSSQFQVMPLVKQCEE 295 (806)
Q Consensus 276 ~ll~~A~~~~l~~L~~~C~~ 295 (806)
.+|+.|++|++-.|++..++
T Consensus 86 gvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 86 GVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHhhHHhhHhHHhHHhh
Confidence 99999999999999876555
No 90
>PLN02772 guanylate kinase
Probab=56.10 E-value=27 Score=38.99 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=32.1
Q ss_pred cccccceeeecCCCCceEEEecccCCceeEecCCCCcEEEec--cCCCCCcC-------CCCeEEeecc
Q 040529 623 SSFKELQYICDGDSNGVLYFAGTSYGEHPWVNPVLAKRINIT--ASSPISRY-------TDPKALASRT 682 (806)
Q Consensus 623 ~~~~e~i~~~gG~~~gvlY~iGg~~~sve~ynP~~~~w~~vt--~s~~~~r~-------~~~~~~v~~g 682 (806)
..+.+.+|++||.+++ |.....+.+||+.+.+|...+ -..|.+|- .+..++|.++
T Consensus 31 v~igdk~yv~GG~~d~-----~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~ 94 (398)
T PLN02772 31 VTIGDKTYVIGGNHEG-----NTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKK 94 (398)
T ss_pred EEECCEEEEEcccCCC-----ccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeC
Confidence 3445666666664332 113457899999999997544 33455553 2344555544
No 91
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=55.91 E-value=64 Score=32.23 Aligned_cols=101 Identities=13% Similarity=0.271 Sum_probs=63.9
Q ss_pred CCCCeeEEEecCCceeeEeeeeEeeecCCc-ccceEEEEEEecCCCCeEeeEEeecCcccccCCccceeeecCCC-----
Q 040529 696 GHNCTWWMVDIGQDHQLMCNYYTLRMDGSR-AYIRYWNFQGSMDGKSWTNLRVHENDQTMCKHGQFASWAVIGPN----- 769 (806)
Q Consensus 696 ~~~nsW~~vd~~~~~~~~p~~Y~~r~~~~~-~~lr~W~~~gs~dg~~W~~l~~~~~~~~l~~~~~~~~~~i~~~~----- 769 (806)
+.+.+|+.+.+..- .+.-+--.-...-.. +-+|-.++-|+.|.++.+.|=. ..|+.+...-||++.-..
T Consensus 41 ~~~~QyiiLkL~~p-aiV~sItFGKy~K~HvCNlK~fkv~gG~~~~~m~ell~----~gLkND~~~Etf~l~~~~~~~~~ 115 (199)
T PF06588_consen 41 NSPPQYIILKLESP-AIVKSITFGKYEKPHVCNLKKFKVYGGMDEENMIELLH----GGLKNDSNPETFNLKHKTNNGIE 115 (199)
T ss_pred CCCCcEEEEEcCCC-eEEEEEeccccccCccccceeeEEeccCCHHHHHHHHh----hhccCCCCCceEEeEEecCCccc
Confidence 45778999888753 332221111111222 3499999999999888765531 356555666778774221
Q ss_pred CCcCeEEEEEEEeccCCCCCCCceEEEeceEEeee
Q 040529 770 ALRPFRFFRVVLMGPTADAANSWNFCICFLELYGY 804 (806)
Q Consensus 770 ~~~~~r~fri~q~g~n~~~~~~~~l~l~~~e~~G~ 804 (806)
..-|-||+||.=. .+-|.| .+++|=.+|+.|.
T Consensus 116 ~~fP~rYIKIvPL--~swGps-FNfSIWyVeL~Gi 147 (199)
T PF06588_consen 116 NYFPCRYIKIVPL--QSWGPS-FNFSIWYVELSGI 147 (199)
T ss_pred ceeeeeeeEEech--hhcCCC-CceEEEEEEEecc
Confidence 2348999999865 444443 6789989999884
No 92
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=55.90 E-value=9.6 Score=34.90 Aligned_cols=89 Identities=8% Similarity=0.087 Sum_probs=60.6
Q ss_pred ccEEEEecCCCeEEEeeeeeecccCcccCCC-CCC----ceEEeCCCCHHHHHHHHHhhccCcccC--------------
Q 040529 209 SDMFFIVGTEEKLVPAHKVILQASGNFPLSL-TGE----GIVQLQEVIYPILHALLQFIYTGRTQI-------------- 269 (806)
Q Consensus 209 sDv~~~v~~~~~~~~aHk~ILaarS~~F~~~-~~~----~~i~l~~v~~~~f~~lL~fiYtg~~~i-------------- 269 (806)
|-|.+..++ |+.|.+-+.| |-||-..+++ ... -.+.+++|...+|..+++|+-...-..
T Consensus 2 s~i~l~s~d-ge~F~vd~~i-AerSiLikN~l~d~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p 79 (158)
T COG5201 2 SMIELESID-GEIFRVDENI-AERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKP 79 (158)
T ss_pred CceEEEecC-CcEEEehHHH-HHHHHHHHHHhccccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCC
Confidence 345666664 7777776643 5566554431 111 224456899999999999997554332
Q ss_pred -----------CCCCchhHHHhhhhccchhhHHHHHHHHHh
Q 040529 270 -----------SEPLLGPLWALSSQFQVMPLVKQCEETMER 299 (806)
Q Consensus 270 -----------~~~~~~~ll~~A~~~~l~~L~~~C~~~l~~ 299 (806)
..+.+.++..+|.++.++.|.+.|+..+..
T Consensus 80 ~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivae 120 (158)
T COG5201 80 SDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAE 120 (158)
T ss_pred ccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 233467888899999999999999998753
No 93
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=51.79 E-value=17 Score=27.26 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=21.2
Q ss_pred CeEEeecccC--Cc-cccCCeeecCCCCeeEEE
Q 040529 675 PKALASRTYQ--GL-SFAGPRMEDGHNCTWWMV 704 (806)
Q Consensus 675 ~~~~v~~g~~--g~-~~~~~~~y~~~~nsW~~v 704 (806)
.++|+.||+. +. ..++...||+.+++|..+
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~ 34 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI 34 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCCEEEEC
Confidence 4677777776 22 224455699999999987
No 94
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=51.48 E-value=13 Score=27.80 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=18.0
Q ss_pred CCeEEeecccCCc--cccCCeeecCCCCeeEEEe
Q 040529 674 DPKALASRTYQGL--SFAGPRMEDGHNCTWWMVD 705 (806)
Q Consensus 674 ~~~~~v~~g~~g~--~~~~~~~y~~~~nsW~~vd 705 (806)
++.+++.||+.+. ...+...||..+++|..+.
T Consensus 12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred CCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 3567777776543 3345567999999999883
No 95
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=49.76 E-value=36 Score=29.66 Aligned_cols=81 Identities=16% Similarity=0.288 Sum_probs=48.4
Q ss_pred HHHHHHHHhhCchHHHHHHHHHHhhcCC----CC-------CcHHHHHHHhhh--cCCHHHHHHHHHHHHhchh------
Q 040529 426 LQLLILSDQFGVTLLHQECCKLLLECFS----ED-------SVCPILQVVTPI--SSCKLIEETCERKFALHFD------ 486 (806)
Q Consensus 426 ~~Ll~~A~~l~l~~L~~~c~~~L~~~l~----~~-------n~~~~l~~~a~~--~~~~~L~~~~~~~I~~nf~------ 486 (806)
.+++..|..++++.|.+.|.+++..+.. .+ +....++.-... .+-..+.+.+..++..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~~~~ 81 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENREEHL 81 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHHTTTH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHHHHHHH
Confidence 5789999999999999999999987432 11 001122211111 1224677888888877654
Q ss_pred -hhhccccccccCCHHHHHhhc
Q 040529 487 -YCTTASLDFVFLDEATFSSII 507 (806)
Q Consensus 487 -~l~~~~~~F~~L~~~~l~~IL 507 (806)
.+ ...-.|..|+.+.|.+.+
T Consensus 82 ~~L-l~~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 82 KEL-LSCIRFPLLSPEELQNVV 102 (103)
T ss_dssp HHH-HCCCHHHCT-HHHHHHCC
T ss_pred HHH-HHhCCcccCCHHHHHHHH
Confidence 33 344556667766666554
No 96
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=47.08 E-value=51 Score=41.25 Aligned_cols=96 Identities=17% Similarity=0.318 Sum_probs=62.3
Q ss_pred CCCCeeEEEecCCceeeEeeeeEeeec---CCcccceEEEEEEecCCCCeEeeEEeecCcccccCCccc---eeeecCCC
Q 040529 696 GHNCTWWMVDIGQDHQLMCNYYTLRMD---GSRAYIRYWNFQGSMDGKSWTNLRVHENDQTMCKHGQFA---SWAVIGPN 769 (806)
Q Consensus 696 ~~~nsW~~vd~~~~~~~~p~~Y~~r~~---~~~~~lr~W~~~gs~dg~~W~~l~~~~~~~~l~~~~~~~---~~~i~~~~ 769 (806)
+..+.|.++|++..+.+. .+..- ++.+...+..++.|+.|.+|.........+++.+.-++. ...+.
T Consensus 71 ~~~~~wlq~dLg~~~ev~----aVatqg~~~Sddwvt~y~l~~sD~g~~w~~y~~~~~~wtf~Gn~n~~sVv~~~l~--- 143 (1306)
T KOG3516|consen 71 SNYNQWLQLDLGKRMEVT----AVATQGRYGSDDWVTSYILQYSDPGRNWKTYSQEGSSWTFVGNVNADSVVYHELE--- 143 (1306)
T ss_pred CcccceeeeccCCceeeE----EEeeccccCcchHHHHHHHhccCCccceEEEEeCCCccccccccccceEEecccc---
Confidence 456889999999853332 22222 444668888999999999999887765555553332221 11122
Q ss_pred CCcCeEEEEEEEeccCCCCCCCceEEEeceEEee
Q 040529 770 ALRPFRFFRVVLMGPTADAANSWNFCICFLELYG 803 (806)
Q Consensus 770 ~~~~~r~fri~q~g~n~~~~~~~~l~l~~~e~~G 803 (806)
..---||+||.-+.-|..|-+ -+ .+|+||
T Consensus 144 ~~~~ar~vr~~pl~wnp~gri--g~---rVevyg 172 (1306)
T KOG3516|consen 144 PPIEARFVRILPLDWNPKGRI--GM---RVEVYG 172 (1306)
T ss_pred CcccceEEeeeeeeeCCCCcc--ee---EEEEEe
Confidence 112469999999999998852 23 478888
No 97
>KOG2687 consensus Spindle pole body protein, contains UNC-84 domain [Cell cycle control, cell division, chromosome partitioning]
Probab=45.60 E-value=1.4e+02 Score=33.33 Aligned_cols=106 Identities=10% Similarity=0.058 Sum_probs=69.6
Q ss_pred CeeecCCCCeeEEEecCCceeeEeeeeEeeecCC--------cccceEEEEEEecC-CCCeEeeEEeecCcccccCCccc
Q 040529 691 PRMEDGHNCTWWMVDIGQDHQLMCNYYTLRMDGS--------RAYIRYWNFQGSMD-GKSWTNLRVHENDQTMCKHGQFA 761 (806)
Q Consensus 691 ~~~y~~~~nsW~~vd~~~~~~~~p~~Y~~r~~~~--------~~~lr~W~~~gs~d-g~~W~~l~~~~~~~~l~~~~~~~ 761 (806)
.||-=..+..-+.|.|.. .|.|+.-|+.|.+. ++++|...+-|+.+ ..+|.+|-..-..+ .....+-
T Consensus 295 ~Cw~FkGsrg~v~V~La~--~Iip~avTleHv~~sVspd~~~sSAPKdf~V~g~~~~~~~~~~LLG~ftYD--~d~~~~Q 370 (414)
T KOG2687|consen 295 ECWAFKGSRGYVTVRLAR--FIIPSAVTLEHVPKSVSPDGNISSAPKDFDVFGSTQDCTEEEVLLGEFTYD--LDGSPIQ 370 (414)
T ss_pred ceeeecCCceEEEEEecc--eEEeeeeeeecccceecCCCCcCcCCcceEEEeecccCCcCceeeEEEEEC--CCCCcce
Confidence 344223355677888877 79999999988622 26799999999886 66677765432111 1226678
Q ss_pred eeeecCCCCCcCeEEEEEEEeccCCCCCCCceEEEeceEEeee
Q 040529 762 SWAVIGPNALRPFRFFRVVLMGPTADAANSWNFCICFLELYGY 804 (806)
Q Consensus 762 ~~~i~~~~~~~~~r~fri~q~g~n~~~~~~~~l~l~~~e~~G~ 804 (806)
||++.... ..||+..+|.-+ ++.+++.+=||=.|..+|.
T Consensus 371 tF~~q~~~-~~~~~~V~l~~~---SN~G~p~fTCiYR~RVhG~ 409 (414)
T KOG2687|consen 371 TFSLQHDT-SAPFKTVELRFN---SNHGHPKFTCIYRFRVHGR 409 (414)
T ss_pred EEeccCCC-ccccceEEEEEe---cCCCCCCceEEEEEEEcCc
Confidence 99997332 345666666554 4444435789999999995
No 98
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.03 E-value=51 Score=35.95 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=35.7
Q ss_pred CcEEEeccCCCCCc------CCCCeEEeecccCCccc------cCCeeecCCCCeeEEEecCC
Q 040529 658 AKRINITASSPISR------YTDPKALASRTYQGLSF------AGPRMEDGHNCTWWMVDIGQ 708 (806)
Q Consensus 658 ~~w~~vt~s~~~~r------~~~~~~~v~~g~~g~~~------~~~~~y~~~~nsW~~vd~~~ 708 (806)
.+|.+++.=+-..| ..++++|+.+|+..... .+..+|||.+|+|.+++...
T Consensus 70 k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s 132 (381)
T COG3055 70 KGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS 132 (381)
T ss_pred CCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc
Confidence 46888766554555 46788999999743332 23345999999999998533
No 99
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=38.32 E-value=72 Score=36.28 Aligned_cols=30 Identities=7% Similarity=0.027 Sum_probs=16.2
Q ss_pred EEeecccCCccccCCee-ecCCCCeeEEEec
Q 040529 677 ALASRTYQGLSFAGPRM-EDGHNCTWWMVDI 706 (806)
Q Consensus 677 ~~v~~g~~g~~~~~~~~-y~~~~nsW~~vd~ 706 (806)
+|.-||++|+......| |+...|.|+++.-
T Consensus 275 iYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~ 305 (723)
T KOG2437|consen 275 VYLYGGWDGTQDLADFWAYSVKENQWTCINR 305 (723)
T ss_pred EEEecCcccchhHHHHHhhcCCcceeEEeec
Confidence 45556666654433333 6666666666543
No 100
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=38.32 E-value=57 Score=34.52 Aligned_cols=86 Identities=16% Similarity=0.259 Sum_probs=57.7
Q ss_pred eeEEEEEcCeeeEEEeeHHHHhcCCH-HHHHhhcCCCCC---CCcceEEeC-CCCHHHHHHHHhHHhcCccccCCCCchh
Q 040529 348 ADVNIYVESHGLVAQSHKIILSLWSV-PFAKMFTNGMSE---SYSSDVHLR-DVSLKAFKIMLEFMYSGELNIEDSLDFG 422 (806)
Q Consensus 348 sDV~l~v~~~~~~~~aHr~ILaa~S~-yF~~mf~~~~~E---s~~~~I~l~-~v~~~~f~~lL~fiYtg~l~i~~~~n~~ 422 (806)
--+++.+++- .|-+.+.+|.+.-. -.-.||.+++.- ....+.++- +++..+|+.+|+|--+|.+.-.+.-.
T Consensus 96 ~~~t~lvd~~--rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vS-- 171 (438)
T KOG3840|consen 96 DKVCLLVDQT--RFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVS-- 171 (438)
T ss_pred cceEEEeeeE--EEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCc--
Confidence 3455566553 47788888765432 234566654321 223455554 69999999999999999988665443
Q ss_pred HHHHHHHHHHHhhCchH
Q 040529 423 SLLLQLLILSDQFGVTL 439 (806)
Q Consensus 423 ~~v~~Ll~~A~~l~l~~ 439 (806)
+.+|-+++|+|.++.
T Consensus 172 --vpELrEACDYLlipF 186 (438)
T KOG3840|consen 172 --VSELREACDYLLVPF 186 (438)
T ss_pred --hHHHHhhcceEEeec
Confidence 788888888887763
No 101
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=30.37 E-value=2.7e+02 Score=23.63 Aligned_cols=62 Identities=23% Similarity=0.300 Sum_probs=31.1
Q ss_pred CCceEEEEEeecCceEEEEecCC-CCcccccccCCCCcEEEEEcccCcc--eeEEEECCeEEEec
Q 040529 29 GRGCVAFEAFAHNDVTVVFRENV-GSQHYHYKRDNSPHYTVIIGSNRNR--RLKIEVNGKTVVDV 90 (806)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~n~--~~~~~~~~~~~~~~ 90 (806)
+.+.++|.+-|++--.|.|...- ...-+..+++..+-+++.++.-... +-.+..||..++|-
T Consensus 4 ~~~~v~F~vwAP~A~~V~L~~~~~~~~~~~m~~~~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP 68 (85)
T cd02858 4 ADRTVTFRLFAPKANEVQVRGSWGGAGSHPMTKDEAGVWSVTTGPLAPGIYTYSFLVDGVRVIDP 68 (85)
T ss_pred CCCcEEEEEECCCCCEEEEEeecCCCccEeCeECCCeEEEEEECCCCCcEEEEEEEECCeEecCC
Confidence 45679999999876566654321 1111223333445555555432222 44455555444433
No 102
>PF13854 Kelch_5: Kelch motif
Probab=27.75 E-value=60 Score=23.52 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=8.9
Q ss_pred cccccccccccccceeeecC
Q 040529 615 SVRFQHRRSSFKELQYICDG 634 (806)
Q Consensus 615 ~~r~~~r~~~~~e~i~~~gG 634 (806)
.+|..+......+.+|++||
T Consensus 3 ~~R~~hs~~~~~~~iyi~GG 22 (42)
T PF13854_consen 3 SPRYGHSAVVVGNNIYIFGG 22 (42)
T ss_pred CCccceEEEEECCEEEEEcC
Confidence 34444443333444555555
No 103
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=27.30 E-value=45 Score=28.06 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=24.6
Q ss_pred CCCCchhHHHhhhhccchhhHHHHHHHHHh
Q 040529 270 SEPLLGPLWALSSQFQVMPLVKQCEETMER 299 (806)
Q Consensus 270 ~~~~~~~ll~~A~~~~l~~L~~~C~~~l~~ 299 (806)
....+.+|+.||.+++++.|.+.|.+++..
T Consensus 12 ~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~ 41 (78)
T PF01466_consen 12 DNDELFDLLNAANYLDIKGLLDLCCKYIAN 41 (78)
T ss_dssp -HHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 445688999999999999999999998853
No 104
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.99 E-value=91 Score=34.12 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=30.3
Q ss_pred eEEEecccC----------CceeEecCCCCcEEEeccCCCCCc-------CCCCeEEeecccC
Q 040529 639 VLYFAGTSY----------GEHPWVNPVLAKRINITASSPISR-------YTDPKALASRTYQ 684 (806)
Q Consensus 639 vlY~iGg~~----------~sve~ynP~~~~w~~vt~s~~~~r-------~~~~~~~v~~g~~ 684 (806)
.||+.||.. +.+-+|||..++|.++..-+|..- ..+.+++..+|++
T Consensus 94 kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn 156 (381)
T COG3055 94 KLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVN 156 (381)
T ss_pred eEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEcccc
Confidence 777777753 256799999999987754444331 1233677777764
No 105
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=24.73 E-value=3.9e+02 Score=30.71 Aligned_cols=90 Identities=21% Similarity=0.247 Sum_probs=52.1
Q ss_pred CCCcccccccccccccceeeecCCCCc-------------eEEEecccC--CceeEecCCCCcEEEeccCCCCCc-----
Q 040529 612 SNQSVRFQHRRSSFKELQYICDGDSNG-------------VLYFAGTSY--GEHPWVNPVLAKRINITASSPISR----- 671 (806)
Q Consensus 612 ~~~~~r~~~r~~~~~e~i~~~gG~~~g-------------vlY~iGg~~--~sve~ynP~~~~w~~vt~s~~~~r----- 671 (806)
..+++|..+..+.+...-|++||..|. -+|.+-=.- +-+-|--|.+.. + .|.+|
T Consensus 132 ~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~G---v---~P~pRESHTA 205 (830)
T KOG4152|consen 132 PPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYG---V---LPPPRESHTA 205 (830)
T ss_pred CCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccC---C---CCCCccccee
Confidence 346777777666666777888885332 455543332 234455555443 1 12233
Q ss_pred -------CCCCeEEeecccCCccccCCee-ecCCCCeeEEEecCC
Q 040529 672 -------YTDPKALASRTYQGLSFAGPRM-EDGHNCTWWMVDIGQ 708 (806)
Q Consensus 672 -------~~~~~~~v~~g~~g~~~~~~~~-y~~~~nsW~~vd~~~ 708 (806)
....+|+|-||-.|+. .+.-| -|-++-+|.+..+..
T Consensus 206 ViY~eKDs~~skmvvyGGM~G~R-LgDLW~Ldl~Tl~W~kp~~~G 249 (830)
T KOG4152|consen 206 VIYTEKDSKKSKMVVYGGMSGCR-LGDLWTLDLDTLTWNKPSLSG 249 (830)
T ss_pred EEEEeccCCcceEEEEccccccc-ccceeEEecceeecccccccC
Confidence 2345788888876654 44445 555688899877753
No 106
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=23.07 E-value=1.6e+02 Score=30.12 Aligned_cols=89 Identities=12% Similarity=0.205 Sum_probs=53.2
Q ss_pred EEEEcCeeeEEEeeHH--HHhcCCHHHHHhhcCCCCC--CCcceEEeCCCCHHHHHHHHhHHhcCccccCCCCchhHHHH
Q 040529 351 NIYVESHGLVAQSHKI--ILSLWSVPFAKMFTNGMSE--SYSSDVHLRDVSLKAFKIMLEFMYSGELNIEDSLDFGSLLL 426 (806)
Q Consensus 351 ~l~v~~~~~~~~aHr~--ILaa~S~yF~~mf~~~~~E--s~~~~I~l~~v~~~~f~~lL~fiYtg~l~i~~~~n~~~~v~ 426 (806)
.+.++|+ ++.|+. +.+-.-....+||++...- .......| |=+-..|+.+|+|+-+..+.+... . ..+.
T Consensus 12 ~lnvGG~---~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~--f-~e~~ 84 (221)
T KOG2723|consen 12 ELNVGGA---IYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPED--F-AEVE 84 (221)
T ss_pred eeccCCe---EEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchh--h-hhHH
Confidence 4556664 333332 2333344566777752221 12223333 346689999999999966666541 1 1278
Q ss_pred HHHHHHHhhCchHHHHHHHH
Q 040529 427 QLLILSDQFGVTLLHQECCK 446 (806)
Q Consensus 427 ~Ll~~A~~l~l~~L~~~c~~ 446 (806)
.|...|++|+++.+...+.+
T Consensus 85 ~L~rEA~f~~l~~~~~~l~~ 104 (221)
T KOG2723|consen 85 RLVREAEFFQLEAPVTYLLN 104 (221)
T ss_pred HHHHHHHHHccccHHHHHhc
Confidence 89999999999977654333
No 107
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=22.94 E-value=1.5e+02 Score=30.90 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=38.7
Q ss_pred ceeeecCC--CCceEEEecccCC---ceeEecCCC----CcEEEeccCCCCCc-------CCCCeEEeecccC
Q 040529 628 LQYICDGD--SNGVLYFAGTSYG---EHPWVNPVL----AKRINITASSPISR-------YTDPKALASRTYQ 684 (806)
Q Consensus 628 ~i~~~gG~--~~gvlY~iGg~~~---sve~ynP~~----~~w~~vt~s~~~~r-------~~~~~~~v~~g~~ 684 (806)
..++.||- .||-+...||..+ .+..|+|-. ..|......|...| -.+|.++|+||..
T Consensus 66 d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 66 DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred CCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC
Confidence 34444442 4566667777543 577788865 57887766777788 3688899998864
No 108
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=22.20 E-value=3.9e+02 Score=24.45 Aligned_cols=30 Identities=27% Similarity=0.102 Sum_probs=23.3
Q ss_pred CCceEEEeccc----CCceeEecCCCCcEEEecc
Q 040529 636 SNGVLYFAGTS----YGEHPWVNPVLAKRINITA 665 (806)
Q Consensus 636 ~~gvlY~iGg~----~~sve~ynP~~~~w~~vt~ 665 (806)
-||++|+++.. ...+-+||-.+.+|..+..
T Consensus 4 inGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~ 37 (129)
T PF08268_consen 4 INGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKL 37 (129)
T ss_pred ECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEe
Confidence 47799998775 3478899999999876643
No 109
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=21.88 E-value=1.5e+02 Score=33.93 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=34.4
Q ss_pred CCcccceEEEEEEecCCCCeEeeEEeecCcccccCCc-cceeeecCCCCCcCeEEEEEEEec
Q 040529 723 GSRAYIRYWNFQGSMDGKSWTNLRVHENDQTMCKHGQ-FASWAVIGPNALRPFRFFRVVLMG 783 (806)
Q Consensus 723 ~~~~~lr~W~~~gs~dg~~W~~l~~~~~~~~l~~~~~-~~~~~i~~~~~~~~~r~fri~q~g 783 (806)
.+....+...++||.|.++|..+....-=-.+...++ ...=.|.-+ ...|||+||+-.+
T Consensus 137 ~~~~~~~~v~VeaSdDl~~W~~l~~~~~l~~L~~~~~~l~~~~I~L~--~~~~rYLRl~~~~ 196 (429)
T PF13163_consen 137 SNFNWQARVSVEASDDLQHWRPLAGDAQLMDLSNGGQRLVQDRIELP--GSNARYLRLTWND 196 (429)
T ss_pred CCCCceEEEEEEEecCcccceEccCCceEEEeccCCcceeeeeEccC--CCCCceEEEEeCC
Confidence 3345567889999999999998843211112222222 222223212 2479999999944
No 110
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=20.33 E-value=5.3e+02 Score=27.61 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=53.7
Q ss_pred CCCccEEEEecCCCeEEEeeeeeecccCcc-----c------CCCCCCceEEe-CCCCHHHHHHHHHhhccCcccCCC-C
Q 040529 206 WELSDMFFIVGTEEKLVPAHKVILQASGNF-----P------LSLTGEGIVQL-QEVIYPILHALLQFIYTGRTQISE-P 272 (806)
Q Consensus 206 ~~~sDv~~~v~~~~~~~~aHk~ILaarS~~-----F------~~~~~~~~i~l-~~v~~~~f~~lL~fiYtg~~~i~~-~ 272 (806)
+..--++..|+ +..|-.-+.+|-+.-.- | ..-....+.++ .+++..+|+++|+|--||.+.-+. -
T Consensus 93 g~~~~~t~lvd--~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~v 170 (438)
T KOG3840|consen 93 GEGDKVCLLVD--QTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSV 170 (438)
T ss_pred CCCcceEEEee--eEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCC
Confidence 33334666664 67888888888664322 2 11234566777 489999999999999999886543 3
Q ss_pred CchhHHHhhhhccch
Q 040529 273 LLGPLWALSSQFQVM 287 (806)
Q Consensus 273 ~~~~ll~~A~~~~l~ 287 (806)
.+.+|-++++++-++
T Consensus 171 SvpELrEACDYLlip 185 (438)
T KOG3840|consen 171 SVSELREACDYLLVP 185 (438)
T ss_pred chHHHHhhcceEEee
Confidence 566777777766543
Done!