BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040530
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Capric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK1|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Lauric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK2|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Myristic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK3|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Palmitoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK4|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Stearic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK5|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Oleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK6|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Alpha-Linolenic
Acid Revealed By High-Resolution X-Ray Crystallography
pdb|1FK7|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Ricinoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1AFH|A Chain A, Lipid Transfer Protein From Maize Seedlings, Nmr, 15
Structures
pdb|1MZL|A Chain A, Maize Nonspecific Lipid Transfer Protein
pdb|1MZM|A Chain A, Maize Nonspecific Lipid Transfer Protein Complexed With
Palmitate
Length = 93
Score = 33.1 bits (74), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 12 CTNVLIGMAPCLSYVSGSSSTPSAQCCSQLASV 44
C V +APC+SY G S PSA CCS + S+
Sbjct: 4 CGQVASAIAPCISYARGQGSGPSAGCCSGVRSL 36
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 12 CTNVLIGMAPCLSYVSGSSSTPSAQCC---SQLASVVRSNPR----CLCMXXXXXXXXXX 64
C V ++PCL+Y++G PS QCC +L + + P C C+
Sbjct: 4 CGAVTSDLSPCLTYLTGGPG-PSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITK- 61
Query: 65 XXINQTLALALPGACNVQTP 84
+N A ALPG C V P
Sbjct: 62 --LNTNNAAALPGKCGVNIP 79
>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2ALG|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
Length = 92
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 12 CTNVLIGMAPCLSYVSGSSSTPSAQCCSQLASV---VRSNPR----CLCMXXXXXXXXXX 64
C V +APC+ YV G + P A CC+ + +V R+ P C C+
Sbjct: 4 CGQVSSSLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPG- 61
Query: 65 XXINQTLALALPGACNVQTP 84
+N A ALPG C V P
Sbjct: 62 --VNPNNAAALPGKCGVSIP 79
>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With
Prostaglandin B2
Length = 90
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 11 DCTNVLIGMAPCLSYVSGSSSTPSAQCCSQLASV 44
DC +V + PCLSYV G PS QCC + ++
Sbjct: 2 DCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNL 34
>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1BWO|B Chain B, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1GH1|A Chain A, Nmr Structures Of Wheat Nonspecific Lipid Transfer
Protein
Length = 90
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 11 DCTNVLIGMAPCLSYVSGSSSTPSAQCCSQLASV 44
DC +V + PCLSYV G PS QCC + ++
Sbjct: 2 DCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNL 34
>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10
Structures
pdb|1JTB|A Chain A, Lipid Transfer Protein Complexed With Palmitoyl Coenzyme
A, Nmr, 16 Structures
pdb|1LIP|A Chain A, Barley Lipid Transfer Protein (Nmr, 4 Structures)
Length = 91
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 11 DCTNVLIGMAPCLSYVSGSSSTPSAQCCSQLASVVR----SNPRCLCMXXXXXXXXXXXX 66
+C V M PCL+YV G PS +CC+ + + S R
Sbjct: 2 NCGQVDSKMKPCLTYVQGGPG-PSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHN 60
Query: 67 INQTLALALPGACNVQTP 84
+N A ++P CNV P
Sbjct: 61 LNLNNAASIPSKCNVNVP 78
>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In
Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl
pdb|3GSH|A Chain A, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
pdb|3GSH|B Chain B, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
Length = 91
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 11 DCTNVLIGMAPCLSYVSGSSSTPSAQCC-------SQLASVVRSNPRCLCMXXXXXXXXX 63
+C V M PCL+YV G PS +CC +Q S C C+
Sbjct: 2 NCGQVDSKMKPCLTYVQGGPG-PSGECCNGVRDLHNQAQSSGDRQTVCNCL---KGIARG 57
Query: 64 XXXINQTLALALPGACNVQTP 84
+N A ++P CNV P
Sbjct: 58 IHNLNLNNAASIPSKCNVNVP 78
>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1
Length = 91
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 12 CTNVLIGMAPCLSYVSGSSSTPSAQCCSQLASVVRS----NPRCLCMXXXXXXXXXXXXI 67
C V +APCL+Y+ ++ P +CC + ++V S R + I
Sbjct: 4 CGQVTSNLAPCLAYL--RNTGPLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGI 61
Query: 68 NQTLALALPGACNVQTP 84
N A LP C V P
Sbjct: 62 NLGKAAGLPSTCGVNIP 78
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer
Protein-1 Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer
Protein-1 Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer
Protein-1 Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer
Protein-1 Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14
Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 12 CTNVLIGMAPCLSYVSGSSSTPSAQCCSQLASV 44
C V + PCL+Y G + PSA CCS + S+
Sbjct: 3 CGQVNSAVGPCLTYARGGAG-PSAACCSGVRSL 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.125 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,055,133
Number of Sequences: 62578
Number of extensions: 142770
Number of successful extensions: 319
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 15
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)