Query 040530
Match_columns 157
No_of_seqs 231 out of 1004
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:20:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.7 2.3E-17 5.1E-22 116.3 4.2 80 10-90 1-89 (89)
2 cd04660 nsLTP_like nsLTP_like: 99.6 2.7E-16 5.8E-21 107.6 3.9 71 12-89 1-73 (73)
3 cd00010 AAI_LTSS AAI_LTSS: Alp 99.6 1.1E-15 2.3E-20 100.9 3.5 63 19-81 1-63 (63)
4 PF14368 LTP_2: Probable lipid 99.5 1.1E-15 2.4E-20 107.6 -0.5 75 9-89 19-96 (96)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.5 3.6E-14 7.9E-19 95.8 3.6 61 17-84 4-64 (66)
6 smart00499 AAI Plant lipid tra 99.2 2.6E-11 5.6E-16 81.0 4.6 75 12-89 1-79 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.9 2.9E-11 6.4E-16 84.5 -5.2 69 17-89 13-90 (90)
8 PF14547 Hydrophob_seed: Hydro 96.5 0.00091 2E-08 47.3 0.6 77 12-90 2-85 (85)
9 cd01958 HPS_like HPS_like: Hyd 96.1 0.0044 9.6E-08 43.9 2.6 76 12-89 4-85 (85)
10 cd00261 AAI_SS AAI_SS: Alpha-A 85.3 0.15 3.3E-06 36.6 -1.2 69 17-90 13-109 (110)
11 PF05617 Prolamin_like: Prolam 31.0 44 0.00095 21.7 2.1 24 28-54 23-46 (70)
12 COG3889 Predicted solute bindi 27.7 1E+02 0.0023 30.2 4.7 18 132-149 848-865 (872)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.68 E-value=2.3e-17 Score=116.32 Aligned_cols=80 Identities=33% Similarity=0.726 Sum_probs=65.4
Q ss_pred CCchhhhcCcccChhhhhCCCCCCcHhHHHHHHhhhcC-----CCceeceeccCCCCCCCcccCHHHHhhccccCCCCCC
Q 040530 10 SDCTNVLIGMAPCLSYVSGSSSTPSAQCCSQLASVVRS-----NPRCLCMVLGDGGSSLGVSINQTLALALPGACNVQTP 84 (157)
Q Consensus 10 ~~C~~~~~~L~pCl~yltg~~~~Ps~~CC~~lk~v~~~-----~~~CLC~~l~~~~~~lg~~in~t~a~~LP~~Cgv~~p 84 (157)
.+|..++..|.||++|++++...|++.||++++++++. +.+|+|+.+++....+. +||.+||++||++|||+++
T Consensus 1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~-~i~~~~a~~LP~~C~v~~~ 79 (89)
T cd01960 1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGIS-GLNPGRAAGLPGKCGVSIP 79 (89)
T ss_pred CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccC-CCCHHHHHhChHhcccCCC
Confidence 36999999999999999998778999999999998753 45677777887654442 3999999999999999976
Q ss_pred ----CCCCCC
Q 040530 85 ----PVSRCN 90 (157)
Q Consensus 85 ----p~s~C~ 90 (157)
+.+||+
T Consensus 80 ~~i~~~~dC~ 89 (89)
T cd01960 80 YPISPSTDCS 89 (89)
T ss_pred CCCCCCCCCC
Confidence 456664
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.62 E-value=2.7e-16 Score=107.57 Aligned_cols=71 Identities=35% Similarity=0.712 Sum_probs=59.6
Q ss_pred chhhhcCcccChhhhhCCC--CCCcHhHHHHHHhhhcCCCceeceeccCCCCCCCcccCHHHHhhccccCCCCCCCCCCC
Q 040530 12 CTNVLIGMAPCLSYVSGSS--STPSAQCCSQLASVVRSNPRCLCMVLGDGGSSLGVSINQTLALALPGACNVQTPPVSRC 89 (157)
Q Consensus 12 C~~~~~~L~pCl~yltg~~--~~Ps~~CC~~lk~v~~~~~~CLC~~l~~~~~~lg~~in~t~a~~LP~~Cgv~~pp~s~C 89 (157)
|...+..|+||++||++++ ..|+..||++||++ +..|+|.+++.. .+. .||.+||++||++|||++|+ ++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---~~~C~C~~~~~~--~~~-~i~~~~a~~Lp~~Cgv~~p~-~~C 73 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLCRYKTSL--VLQ-IIDPDKAVYLPAKCGLPLPP-SSC 73 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---CcCCEeeccCCC--ccc-ccCHHHHHHHHHHcCCCCCC-CCC
Confidence 5666788999999999876 36899999999986 567999877653 233 49999999999999999988 887
No 3
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.58 E-value=1.1e-15 Score=100.87 Aligned_cols=63 Identities=52% Similarity=0.995 Sum_probs=54.1
Q ss_pred cccChhhhhCCCCCCcHhHHHHHHhhhcCCCceeceeccCCCCCCCcccCHHHHhhccccCCC
Q 040530 19 MAPCLSYVSGSSSTPSAQCCSQLASVVRSNPRCLCMVLGDGGSSLGVSINQTLALALPGACNV 81 (157)
Q Consensus 19 L~pCl~yltg~~~~Ps~~CC~~lk~v~~~~~~CLC~~l~~~~~~lg~~in~t~a~~LP~~Cgv 81 (157)
|+||++|++++...|+..||++++++.+.++.|||+++++........+|.+++++||++|||
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 679999999987789999999999999989999999999875433212379999999999996
No 4
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.52 E-value=1.1e-15 Score=107.61 Aligned_cols=75 Identities=53% Similarity=1.071 Sum_probs=48.9
Q ss_pred cCCchhhhcCcccC---hhhhhCCCCCCcHhHHHHHHhhhcCCCceeceeccCCCCCCCcccCHHHHhhccccCCCCCCC
Q 040530 9 QSDCTNVLIGMAPC---LSYVSGSSSTPSAQCCSQLASVVRSNPRCLCMVLGDGGSSLGVSINQTLALALPGACNVQTPP 85 (157)
Q Consensus 9 ~~~C~~~~~~L~pC---l~yltg~~~~Ps~~CC~~lk~v~~~~~~CLC~~l~~~~~~lg~~in~t~a~~LP~~Cgv~~pp 85 (157)
..+|.. .|.+| +.|++++ ..|++.||+++|++++.++.|||+++++.. ..+++||.+|++.||++||++.++
T Consensus 19 ~~~c~~---~l~~c~~~~~~~~~~-~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~-~~~~~in~~~a~~Lp~~Cg~~~~~ 93 (96)
T PF14368_consen 19 CCSCAN---SLLPCCPCLCYVTGG-PAPSAACCSALKSVVQADPPCLCQLLNSPG-APGFGINVTRALALPAACGVPVPP 93 (96)
T ss_dssp TTB-HC---CCCHH--HHHHHCC------HHHHHHHCC----HCCHHHCCCC-CC-HCHHCCTCHHHHHHHHHCTSS-S-
T ss_pred cchhHH---HHhccccchhccCCC-CCCCHHHHHHHHHhccCCCCCHHHhcCccc-cccCCcCHHHHHHHHHHcCCCCCC
Confidence 345654 46666 7888854 579999999999998889999999999865 234579999999999999999987
Q ss_pred CCCC
Q 040530 86 VSRC 89 (157)
Q Consensus 86 ~s~C 89 (157)
++|
T Consensus 94 -~~C 96 (96)
T PF14368_consen 94 -SKC 96 (96)
T ss_dssp ----
T ss_pred -CCC
Confidence 777
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.47 E-value=3.6e-14 Score=95.84 Aligned_cols=61 Identities=34% Similarity=0.688 Sum_probs=52.9
Q ss_pred cCcccChhhhhCCCCCCcHhHHHHHHhhhcCCCceeceeccCCCCCCCcccCHHHHhhccccCCCCCC
Q 040530 17 IGMAPCLSYVSGSSSTPSAQCCSQLASVVRSNPRCLCMVLGDGGSSLGVSINQTLALALPGACNVQTP 84 (157)
Q Consensus 17 ~~L~pCl~yltg~~~~Ps~~CC~~lk~v~~~~~~CLC~~l~~~~~~lg~~in~t~a~~LP~~Cgv~~p 84 (157)
.+|.+|++|++++ ..|++.||+.||+ +..|||+|++++. ++..||.++|++|+++|||++|
T Consensus 4 ~~L~~C~~ai~~~-~~Ps~~CC~~Lk~----~~~CLC~y~~~p~--l~~~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILGG-SPPSAACCAKLKE----QQSCLCQYAKNPS--LKQYVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhCC-CCCCHHHHHHHhc----CCCCeeeeecCcc--HHhhcCcHHHHHHHHHcCCCCC
Confidence 4799999999976 4799999999999 4589999998863 4446999999999999999985
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.19 E-value=2.6e-11 Score=81.00 Aligned_cols=75 Identities=40% Similarity=0.837 Sum_probs=59.6
Q ss_pred chhhhcCcccChhhhhCC--CCCCcHhHHHHHHhhhcCCCceeceeccCCCCCCCc--ccCHHHHhhccccCCCCCCCCC
Q 040530 12 CTNVLIGMAPCLSYVSGS--SSTPSAQCCSQLASVVRSNPRCLCMVLGDGGSSLGV--SINQTLALALPGACNVQTPPVS 87 (157)
Q Consensus 12 C~~~~~~L~pCl~yltg~--~~~Ps~~CC~~lk~v~~~~~~CLC~~l~~~~~~lg~--~in~t~a~~LP~~Cgv~~pp~s 87 (157)
|...+..+.+|++|+++. ...|+..||++|+.+. +..|+|.+++.....+.. .+|..++..||+.||+..+. +
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~~-~ 77 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPPY-T 77 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCCC-C
Confidence 667777888999999987 4578899999999986 788999888875422211 26999999999999998754 4
Q ss_pred CC
Q 040530 88 RC 89 (157)
Q Consensus 88 ~C 89 (157)
+|
T Consensus 78 ~C 79 (79)
T smart00499 78 DC 79 (79)
T ss_pred CC
Confidence 54
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.88 E-value=2.9e-11 Score=84.48 Aligned_cols=69 Identities=35% Similarity=0.804 Sum_probs=56.0
Q ss_pred cCcccChhhhhCCCCCCcHhHHHHHHhhhcCCCceeceeccCCCCCC---------CcccCHHHHhhccccCCCCCCCCC
Q 040530 17 IGMAPCLSYVSGSSSTPSAQCCSQLASVVRSNPRCLCMVLGDGGSSL---------GVSINQTLALALPGACNVQTPPVS 87 (157)
Q Consensus 17 ~~L~pCl~yltg~~~~Ps~~CC~~lk~v~~~~~~CLC~~l~~~~~~l---------g~~in~t~a~~LP~~Cgv~~pp~s 87 (157)
..|.+|..|++++...|+..||++|+++ ++.|.|..|+...... ...++..+|..||+.|||.++. +
T Consensus 13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l---~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~-~ 88 (90)
T PF00234_consen 13 VRLSPCLPYLQGGCQQPSQQCCQQLRQL---DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPY-T 88 (90)
T ss_dssp SHHHGGHHHHTTSSSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSS-S
T ss_pred ccccccHHHHhcccccchHHHhHHHHHH---hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCC-C
Confidence 4589999999997667999999999999 8999999887653221 1368999999999999999865 5
Q ss_pred CC
Q 040530 88 RC 89 (157)
Q Consensus 88 ~C 89 (157)
+|
T Consensus 89 ~C 90 (90)
T PF00234_consen 89 DC 90 (90)
T ss_dssp -G
T ss_pred CC
Confidence 66
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=96.47 E-value=0.00091 Score=47.32 Aligned_cols=77 Identities=26% Similarity=0.583 Sum_probs=53.3
Q ss_pred chhhhcCcccChhhhh----CCCCCCcHhHHHHHHhhhcCC-CceeceeccCCCCCCC-cccCHHHHh-hccccCCCCCC
Q 040530 12 CTNVLIGMAPCLSYVS----GSSSTPSAQCCSQLASVVRSN-PRCLCMVLGDGGSSLG-VSINQTLAL-ALPGACNVQTP 84 (157)
Q Consensus 12 C~~~~~~L~pCl~ylt----g~~~~Ps~~CC~~lk~v~~~~-~~CLC~~l~~~~~~lg-~~in~t~a~-~LP~~Cgv~~p 84 (157)
|-....+|--|.+.+. .-+..+...||.-++.+.+.+ ..|||..+|... +| +++|....+ .|-..||...|
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~v--lg~i~~~ipv~l~~lln~CGk~~p 79 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANV--LGLINVNIPVALNLLLNACGKTVP 79 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhc--ccccccccccHHHHHHHHhCCcCc
Confidence 4444457778888771 112246788999999988765 699998888753 44 344443333 46788999999
Q ss_pred CCCCCC
Q 040530 85 PVSRCN 90 (157)
Q Consensus 85 p~s~C~ 90 (157)
+.++|.
T Consensus 80 ~gf~C~ 85 (85)
T PF14547_consen 80 SGFTCP 85 (85)
T ss_pred CCCcCC
Confidence 999984
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=96.15 E-value=0.0044 Score=43.87 Aligned_cols=76 Identities=26% Similarity=0.612 Sum_probs=53.0
Q ss_pred chhhhcCcccChhhhhCC----CCCCcHhHHHHHHhhhcCC-CceeceeccCCCCCCCcccCHHHHhh-ccccCCCCCCC
Q 040530 12 CTNVLIGMAPCLSYVSGS----SSTPSAQCCSQLASVVRSN-PRCLCMVLGDGGSSLGVSINQTLALA-LPGACNVQTPP 85 (157)
Q Consensus 12 C~~~~~~L~pCl~yltg~----~~~Ps~~CC~~lk~v~~~~-~~CLC~~l~~~~~~lg~~in~t~a~~-LP~~Cgv~~pp 85 (157)
|-.+..+|--|.+-+..- +..|...||.-++.+.+-+ ..|||..||.. .+|+++|..-.+. |-..||-..|+
T Consensus 4 CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan--~lgi~~~~pv~l~llln~CGk~~P~ 81 (85)
T cd01958 4 CPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKAN--ILGISINIPVALSLLLNSCGRNVPP 81 (85)
T ss_pred CCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeecc--ccCcccccChhHHHHHHHHcCcCCC
Confidence 444445666777765321 2357789999999987754 69999988864 3555555555554 45689999998
Q ss_pred CCCC
Q 040530 86 VSRC 89 (157)
Q Consensus 86 ~s~C 89 (157)
.++|
T Consensus 82 gf~C 85 (85)
T cd01958 82 GFTC 85 (85)
T ss_pred CCcC
Confidence 8887
No 10
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=85.31 E-value=0.15 Score=36.55 Aligned_cols=69 Identities=28% Similarity=0.545 Sum_probs=45.1
Q ss_pred cCcccChhhhhCCC---C-----------CCcHhHHHHHHhhhcCCCceeceeccCCCCCC------------C--cccC
Q 040530 17 IGMAPCLSYVSGSS---S-----------TPSAQCCSQLASVVRSNPRCLCMVLGDGGSSL------------G--VSIN 68 (157)
Q Consensus 17 ~~L~pCl~yltg~~---~-----------~Ps~~CC~~lk~v~~~~~~CLC~~l~~~~~~l------------g--~~in 68 (157)
..|.+|..||.-.. . ..-..||..|+.+ ...|.|..|....... + ...-
T Consensus 13 ~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i---~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (110)
T cd00261 13 QPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI---PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERM 89 (110)
T ss_pred ccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhC---cHhhhHHHHHHHHHHHHHhhhccccccCcChHHHH
Confidence 35789999986321 0 1236799999998 7899999886431100 0 1233
Q ss_pred HHHHhhccccCCCCCCCCCCCC
Q 040530 69 QTLALALPGACNVQTPPVSRCN 90 (157)
Q Consensus 69 ~t~a~~LP~~Cgv~~pp~s~C~ 90 (157)
...|..||..|||.. ...|.
T Consensus 90 ~~~a~~Lp~~C~~~~--~~~C~ 109 (110)
T cd00261 90 RQAAQNLPSMCNLYP--PPYCP 109 (110)
T ss_pred HHHHHhhchhcCCCC--CCCCC
Confidence 457889999999985 23464
No 11
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=31.00 E-value=44 Score=21.68 Aligned_cols=24 Identities=17% Similarity=0.562 Sum_probs=18.4
Q ss_pred CCCCCCcHhHHHHHHhhhcCCCceece
Q 040530 28 GSSSTPSAQCCSQLASVVRSNPRCLCM 54 (157)
Q Consensus 28 g~~~~Ps~~CC~~lk~v~~~~~~CLC~ 54 (157)
|+....+..||..+..+ ...|.=.
T Consensus 23 g~~~~i~~~CC~~i~~~---g~~C~~~ 46 (70)
T PF05617_consen 23 GNKKNIGPECCKAINKM---GKDCHPA 46 (70)
T ss_pred CCCCCCChHHHHHHHHH---hHhHHHH
Confidence 44357889999999988 6677665
No 12
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=27.74 E-value=1e+02 Score=30.15 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=9.2
Q ss_pred ccccchHHHHHHHHHHHH
Q 040530 132 LSVNAPSQLILSVVFMAS 149 (157)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~ 149 (157)
+.+-.++.|+.+|+++++
T Consensus 848 ~~i~g~i~iiv~LaAla~ 865 (872)
T COG3889 848 GGICGPIVIIVGLAALAL 865 (872)
T ss_pred cccchHHHHHHHHHHHHH
Confidence 335555555555554444
Done!