BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040533
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 306 bits (784), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 146/307 (47%), Positives = 210/307 (68%), Gaps = 8/307 (2%)
Query: 35 RILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSIS 94
RILDAP +RNDYY N++DW N+LA+AL +YLW +G++ +LL++ ++ +S++
Sbjct: 95 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVA 154
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
W ++ LAVG ++++QLWD + K +RN+ H RV + S WN +IL+SGS+ I
Sbjct: 155 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS---WNSYILSSGSRSGHI 211
Query: 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS-KCLHR 213
+HDVRV+ + + ++ H+ EVCGL+W+ +G LASGG+DNLV+VW + L
Sbjct: 212 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 271
Query: 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRH 273
F H+ AVKA+AWCP+Q NVLA+GGGT D I+IWNV G C+ +VD +Q+C + W+ H
Sbjct: 272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH 331
Query: 274 HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET 333
+KE++SGHGF+ + +L +WKYP M K EL+ TSR+L L+ SPDG TV SAAADET
Sbjct: 332 YKELISGHGFAQN----QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 387
Query: 334 LRFWEAF 340
LR W F
Sbjct: 388 LRLWRCF 394
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 306 bits (784), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 146/307 (47%), Positives = 210/307 (68%), Gaps = 8/307 (2%)
Query: 35 RILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSIS 94
RILDAP +RNDYY N++DW N+LA+AL +YLW +G++ +LL++ ++ +S++
Sbjct: 106 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVA 165
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
W ++ LAVG ++++QLWD + K +RN+ H RV + S WN +IL+SGS+ I
Sbjct: 166 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS---WNSYILSSGSRSGHI 222
Query: 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS-KCLHR 213
+HDVRV+ + + ++ H+ EVCGL+W+ +G LASGG+DNLV+VW + L
Sbjct: 223 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 282
Query: 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRH 273
F H+ AVKA+AWCP+Q NVLA+GGGT D I+IWNV G C+ +VD +Q+C + W+ H
Sbjct: 283 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH 342
Query: 274 HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET 333
+KE++SGHGF+ + +L +WKYP M K EL+ TSR+L L+ SPDG TV SAAADET
Sbjct: 343 YKELISGHGFAQN----QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 398
Query: 334 LRFWEAF 340
LR W F
Sbjct: 399 LRLWRCF 405
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 305 bits (780), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 146/307 (47%), Positives = 210/307 (68%), Gaps = 8/307 (2%)
Query: 35 RILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSIS 94
RILDAP +RNDYY N++DW N+LA+AL +YLW +G++ +LL++ ++ +S++
Sbjct: 15 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVA 74
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
W ++ LAVG ++++QLWD + K +RN+ H RV + S WN +IL+SGS+ I
Sbjct: 75 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS---WNSYILSSGSRSGHI 131
Query: 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS-KCLHR 213
+HDVRV+ + + ++ H+ EVCGL+W+ +G LASGG+DNLV+VW + L
Sbjct: 132 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 191
Query: 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRH 273
F H+ AVKA+AWCP+Q NVLA+GGGT D I+IWNV G C+ +VD +Q+C + W+ H
Sbjct: 192 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH 251
Query: 274 HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET 333
+KE++SGHGF+ + +L +WKYP M K EL+ TSR+L L+ SPDG TV SAAADET
Sbjct: 252 YKELISGHGFAQN----QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 307
Query: 334 LRFWEAF 340
LR W F
Sbjct: 308 LRLWRCF 314
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 247 bits (631), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 196/333 (58%), Gaps = 14/333 (4%)
Query: 11 LETDWYSPRRLLGSPTDFDFQKEA-RILDAPNLRNDYYSNMMDWGRNNILAIALGLELYL 69
L T P+R + +P F R+LDAP + +DYY N++DW N++A+AL +Y+
Sbjct: 58 LRTQHNRPQRPVVTPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYV 117
Query: 70 WKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD 129
W ++G V L + T E + S+ WS D L+VG + ++D E+ +R + GH
Sbjct: 118 WNADSGSVSALAE-TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ 176
Query: 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLA 189
RV SWN H+L+SGS+ +I +HDVR++N+ + H++EVCGL W ++G LA
Sbjct: 177 ARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLA 233
Query: 190 SGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249
SGG+DN+V +WD SS +H AAVKA+AWCP+Q N+LA+GGGT D I WN
Sbjct: 234 SGGNDNVVQIWD---ARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290
Query: 250 VQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH--MTKWGELQ 307
G +++VD +Q+ L W+ H KEI+S HGF + L +W Y +TK ++
Sbjct: 291 AATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDN----NLSIWSYSSSGLTKQVDIP 346
Query: 308 HQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340
+R+L + SPDG + +AA+DE L+FW +
Sbjct: 347 AHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 130/291 (44%), Gaps = 31/291 (10%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W E G+ ++ LK G D IS+ K LA ++LWD + + IR +
Sbjct: 132 IKVWDYETGDFERTLK--GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH 189
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GHD V++ S NG + S S+DK+I +V+ V + H V ++ + +G
Sbjct: 190 GHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKT-FTGHREWVRMVRPNQDGT 247
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP---YQFNVLASG------ 237
L+AS +D V VW +++ +C R+HR V+ ++W P Y A+G
Sbjct: 248 LIASCSNDQTVRVW---VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 304
Query: 238 --------GGTQDGCIKIWNVQKGTCIHS-VDTKAQICGLEWNRHHKEILSGHGFSSSGD 288
G++D IK+W+V G C+ + V + G+ ++ K IL S D
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL------SCAD 358
Query: 289 GQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ L +W Y + L + L VV+ + D+T++ WE
Sbjct: 359 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W +G+ +K ++G + ++WS D+ L L++WD + K ++ L+
Sbjct: 43 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 100
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V ++N +++ SGS D+S+ DV+ + + + AH+ V + ++ +G+
Sbjct: 101 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGS 158
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
L+ S D L +WD +S +CL D V + + P +LA+ T D +
Sbjct: 159 LIVSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTL 212
Query: 246 KIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
K+W+ KG C+ + + C + + G S + + +W
Sbjct: 213 KLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 268
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
+LQ T ++ + P + SAA D+T++ W++
Sbjct: 269 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 306
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 18/217 (8%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH K V++ ++ NG L S S DK +I I+ H + + WS++
Sbjct: 15 LAGHTKAVSSVKFSP-NGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVAWSSD 72
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
NLL S DD + +WD +SS KCL + H V + P Q N++ S G+ D
Sbjct: 73 SNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVS--GSFDES 126
Query: 245 IKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLC-LWKYPHMTK 302
++IW+V+ G C+ ++ + + + +NR I+ SSS DG LC +W
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV-----SSSYDG--LCRIWDTASGQC 179
Query: 303 WGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWE 338
L + + + SP+G +++A D TL+ W+
Sbjct: 180 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 14/204 (6%)
Query: 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW 140
+ G +S+ +S + + LA +++W A K + + GH ++ +W+
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 71
Query: 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
+ ++L S S DK++ DV S + H+ V ++ + NL+ SG D V +W
Sbjct: 72 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS--GGGTQDGCIKIWNVQKGTCIHS 258
D + + KCL H V A+ FN S + DG +IW+ G C+ +
Sbjct: 131 D---VKTGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 182
Query: 259 V--DTKAQICGLEWNRHHKEILSG 280
+ D + ++++ + K IL+
Sbjct: 183 LIDDDNPPVSFVKFSPNGKYILAA 206
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W +G+ +K ++G + ++WS D+ L L++WD + K ++ L+
Sbjct: 64 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 121
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V ++N +++ SGS D+S+ DV+ + + + AH+ V + ++ +G+
Sbjct: 122 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGS 179
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
L+ S D L +WD +S +CL D V + + P +LA+ T D +
Sbjct: 180 LIVSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTL 233
Query: 246 KIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
K+W+ KG C+ + + C + + G S + + +W
Sbjct: 234 KLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 289
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
+LQ T ++ + P + SAA D+T++ W++
Sbjct: 290 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 327
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 18/217 (8%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH K V++ ++ NG L S S DK +I I+ H + + WS++
Sbjct: 36 LAGHTKAVSSVKFSP-NGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVAWSSD 93
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
NLL S DD + +WD +SS KCL + H V + P Q N++ S G+ D
Sbjct: 94 SNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVS--GSFDES 147
Query: 245 IKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLC-LWKYPHMTK 302
++IW+V+ G C+ ++ + + + +NR I+ SSS DG LC +W
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV-----SSSYDG--LCRIWDTASGQC 200
Query: 303 WGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWE 338
L + + + SP+G +++A D TL+ W+
Sbjct: 201 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 237
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 14/204 (6%)
Query: 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW 140
+ G +S+ +S + + LA +++W A K + + GH ++ +W+
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 92
Query: 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
+ ++L S S DK++ DV S + H+ V ++ + NL+ SG D V +W
Sbjct: 93 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Query: 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS--GGGTQDGCIKIWNVQKGTCIHS 258
D + + KCL H V A+ FN S + DG +IW+ G C+ +
Sbjct: 152 D---VKTGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 203
Query: 259 V--DTKAQICGLEWNRHHKEILSG 280
+ D + ++++ + K IL+
Sbjct: 204 LIDDDNPPVSFVKFSPNGKYILAA 227
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W +G+ +K ++G + ++WS D+ L L++WD + K ++ L+
Sbjct: 53 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V ++N +++ SGS D+S+ DV+ + + + AH+ V + ++ +G+
Sbjct: 111 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGS 168
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
L+ S D L +WD +S +CL D V + + P +LA+ T D +
Sbjct: 169 LIVSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTL 222
Query: 246 KIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
K+W+ KG C+ + + C + + G S + + +W
Sbjct: 223 KLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
+LQ T ++ + P + SAA D+T++ W++
Sbjct: 279 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 18/217 (8%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH K V++ ++ NG L S S DK +I I+ H + + WS++
Sbjct: 25 LAGHTKAVSSVKFSP-NGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
NLL S DD + +WD +SS KCL + H V + P Q N++ S G+ D
Sbjct: 83 SNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVS--GSFDES 136
Query: 245 IKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLC-LWKYPHMTK 302
++IW+V+ G C+ ++ + + + +NR I+ SSS DG LC +W
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV-----SSSYDG--LCRIWDTASGQC 189
Query: 303 WGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWE 338
L + + + SP+G +++A D TL+ W+
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 14/194 (7%)
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150
+S+ +S + + LA +++W A K + + GH ++ +W+ + ++L S S
Sbjct: 33 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASD 91
Query: 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210
DK++ DV S + H+ V ++ + NL+ SG D V +WD + + KC
Sbjct: 92 DKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD---VKTGKC 147
Query: 211 LHRFRDHRAAVKALAWCPYQFNVLAS--GGGTQDGCIKIWNVQKGTCIHSV--DTKAQIC 266
L H V A+ FN S + DG +IW+ G C+ ++ D +
Sbjct: 148 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 267 GLEWNRHHKEILSG 280
++++ + K IL+
Sbjct: 203 FVKFSPNGKYILAA 216
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W +G+ +K ++G + ++WS D+ L L++WD + K ++ L+
Sbjct: 53 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V ++N +++ SGS D+S+ DV+ + + + AH+ V + ++ +G+
Sbjct: 111 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGS 168
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
L+ S D L +WD +S +CL D V + + P +LA+ T D +
Sbjct: 169 LIVSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTL 222
Query: 246 KIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
K+W+ KG C+ + + C + + G S + + +W
Sbjct: 223 KLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
+LQ T ++ + P + SAA D+T++ W++
Sbjct: 279 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 18/217 (8%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH K V++ ++ NG L S S DK +I I+ H + + WS++
Sbjct: 25 LAGHTKAVSSVKFSP-NGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
NLL S DD + +WD +SS KCL + H V + P Q N++ S G+ D
Sbjct: 83 SNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVS--GSFDES 136
Query: 245 IKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLC-LWKYPHMTK 302
++IW+V+ G C+ ++ + + + +NR I+ SSS DG LC +W
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV-----SSSYDG--LCRIWDTASGQC 189
Query: 303 WGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWE 338
L + + + SP+G +++A D TL+ W+
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 14/194 (7%)
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150
+S+ +S + + LA +++W A K + + GH ++ +W+ + ++L S S
Sbjct: 33 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASD 91
Query: 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210
DK++ DV S + H+ V ++ + NL+ SG D V +WD + + KC
Sbjct: 92 DKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD---VKTGKC 147
Query: 211 LHRFRDHRAAVKALAWCPYQFNVLAS--GGGTQDGCIKIWNVQKGTCIHSV--DTKAQIC 266
L H V A+ FN S + DG +IW+ G C+ ++ D +
Sbjct: 148 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 267 GLEWNRHHKEILSG 280
++++ + K IL+
Sbjct: 203 FVKFSPNGKYILAA 216
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W +G+ +K ++G + ++WS D+ L L++WD + K ++ L+
Sbjct: 46 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 103
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V ++N +++ SGS D+S+ DV+ + + + AH+ V + ++ +G+
Sbjct: 104 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGS 161
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
L+ S D L +WD +S +CL D V + + P +LA+ T D +
Sbjct: 162 LIVSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTL 215
Query: 246 KIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
K+W+ KG C+ + + C + + G S + + +W
Sbjct: 216 KLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 271
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
+LQ T ++ + P + SAA D+T++ W++
Sbjct: 272 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 309
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 18/217 (8%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH K V++ ++ NG L S S DK +I I+ H + + WS++
Sbjct: 18 LAGHTKAVSSVKFSP-NGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVAWSSD 75
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
NLL S DD + +WD +SS KCL + H V + P Q N++ S G+ D
Sbjct: 76 SNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVS--GSFDES 129
Query: 245 IKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLC-LWKYPHMTK 302
++IW+V+ G C+ ++ + + + +NR I+ SSS DG LC +W
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV-----SSSYDG--LCRIWDTASGQC 182
Query: 303 WGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWE 338
L + + + SP+G +++A D TL+ W+
Sbjct: 183 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 14/204 (6%)
Query: 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW 140
+ G +S+ +S + + LA +++W A K + + GH ++ +W+
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 74
Query: 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
+ ++L S S DK++ DV S + H+ V ++ + NL+ SG D V +W
Sbjct: 75 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS--GGGTQDGCIKIWNVQKGTCIHS 258
D + + KCL H V A+ FN S + DG +IW+ G C+ +
Sbjct: 134 D---VKTGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 185
Query: 259 V--DTKAQICGLEWNRHHKEILSG 280
+ D + ++++ + K IL+
Sbjct: 186 LIDDDNPPVSFVKFSPNGKYILAA 209
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W +G+ +K ++G + ++WS D+ L L++WD + K ++ L+
Sbjct: 47 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 104
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V ++N +++ SGS D+S+ DV+ + + + AH+ V + ++ +G+
Sbjct: 105 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGS 162
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
L+ S D L +WD +S +CL D V + + P +LA+ T D +
Sbjct: 163 LIVSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTL 216
Query: 246 KIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
K+W+ KG C+ + + C + + G S + + +W
Sbjct: 217 KLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
+LQ T ++ + P + SAA D+T++ W++
Sbjct: 273 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 18/217 (8%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH K V++ ++ NG L S S DK +I I+ H + + WS++
Sbjct: 19 LAGHTKAVSSVKFSP-NGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
NLL S DD + +WD +SS KCL + H V + P Q N++ S G+ D
Sbjct: 77 SNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVS--GSFDES 130
Query: 245 IKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLC-LWKYPHMTK 302
++IW+V+ G C+ ++ + + + +NR I+ SSS DG LC +W
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV-----SSSYDG--LCRIWDTASGQC 183
Query: 303 WGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWE 338
L + + + SP+G +++A D TL+ W+
Sbjct: 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 14/204 (6%)
Query: 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW 140
+ G +S+ +S + + LA +++W A K + + GH ++ +W+
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 75
Query: 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
+ ++L S S DK++ DV S + H+ V ++ + NL+ SG D V +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS--GGGTQDGCIKIWNVQKGTCIHS 258
D + + KCL H V A+ FN S + DG +IW+ G C+ +
Sbjct: 135 D---VKTGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 259 V--DTKAQICGLEWNRHHKEILSG 280
+ D + ++++ + K IL+
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAA 210
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W +G+ +K ++G + ++WS D+ L L++WD + K ++ L+
Sbjct: 52 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 109
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V ++N +++ SGS D+S+ DV+ + + + AH+ V + ++ +G+
Sbjct: 110 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGS 167
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
L+ S D L +WD +S +CL D V + + P +LA+ T D +
Sbjct: 168 LIVSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTL 221
Query: 246 KIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
K+W+ KG C+ + + C + + G S + + +W
Sbjct: 222 KLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 277
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
+LQ T ++ + P + SAA D+T++ W++
Sbjct: 278 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 315
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 18/217 (8%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH K V++ ++ NG L S S DK +I I+ H + + WS++
Sbjct: 24 LAGHTKAVSSVKFSP-NGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVAWSSD 81
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
NLL S DD + +WD +SS KCL + H V + P Q N++ S G+ D
Sbjct: 82 SNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVS--GSFDES 135
Query: 245 IKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLC-LWKYPHMTK 302
++IW+V+ G C+ ++ + + + +NR I+ SSS DG LC +W
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV-----SSSYDG--LCRIWDTASGQC 188
Query: 303 WGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWE 338
L + + + SP+G +++A D TL+ W+
Sbjct: 189 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 225
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 14/204 (6%)
Query: 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW 140
+ G +S+ +S + + LA +++W A K + + GH ++ +W+
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 80
Query: 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
+ ++L S S DK++ DV S + H+ V ++ + NL+ SG D V +W
Sbjct: 81 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Query: 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS--GGGTQDGCIKIWNVQKGTCIHS 258
D + + KCL H V A+ FN S + DG +IW+ G C+ +
Sbjct: 140 D---VKTGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 191
Query: 259 V--DTKAQICGLEWNRHHKEILSG 280
+ D + ++++ + K IL+
Sbjct: 192 LIDDDNPPVSFVKFSPNGKYILAA 215
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W +G+ +K ++G + ++WS D+ L L++WD + K ++ L+
Sbjct: 53 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V ++N +++ SGS D+S+ DV+ + + + AH+ V + ++ +G+
Sbjct: 111 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGS 168
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
L+ S D L +WD +S +CL D V + + P +LA+ T D +
Sbjct: 169 LIVSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTL 222
Query: 246 KIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
K+W+ KG C+ + + C + + G S + + +W
Sbjct: 223 KLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
+LQ T ++ + P + SAA D+T++ W++
Sbjct: 279 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 18/217 (8%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH K V++ ++ NG L S S DK +I I+ H + + WS++
Sbjct: 25 LAGHTKAVSSVKFSP-NGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
NLL S DD + +WD +SS KCL + H V + P Q N++ S G+ D
Sbjct: 83 SNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVS--GSFDES 136
Query: 245 IKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLC-LWKYPHMTK 302
++IW+V+ G C+ ++ + + + +NR I+ SSS DG LC +W
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV-----SSSYDG--LCRIWDTASGQC 189
Query: 303 WGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWE 338
L + + + SP+G +++A D TL+ W+
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 14/204 (6%)
Query: 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW 140
+ G +S+ +S + + LA +++W A K + + GH ++ +W+
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 81
Query: 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
+ ++L S S DK++ DV S + H+ V ++ + NL+ SG D V +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS--GGGTQDGCIKIWNVQKGTCIHS 258
D + + KCL H V A+ FN S + DG +IW+ G C+ +
Sbjct: 141 D---VKTGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 259 V--DTKAQICGLEWNRHHKEILSG 280
+ D + ++++ + K IL+
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAA 216
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W +G+ +K ++G + ++WS D+ L L++WD + K ++ L+
Sbjct: 47 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 104
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V ++N +++ SGS D+S+ DV+ + + + AH+ V + ++ +G+
Sbjct: 105 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGS 162
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
L+ S D L +WD +S +CL D V + + P +LA+ T D +
Sbjct: 163 LIVSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTL 216
Query: 246 KIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
K+W+ KG C+ + + C + + G S + + +W
Sbjct: 217 KLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
+LQ T ++ + P + SAA D+T++ W++
Sbjct: 273 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 18/217 (8%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH K V++ ++ NG L S S DK +I I+ H + + WS++
Sbjct: 19 LAGHTKAVSSVKFSP-NGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
NLL S DD + +WD +SS KCL + H V + P Q N++ S G+ D
Sbjct: 77 SNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVS--GSFDES 130
Query: 245 IKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLC-LWKYPHMTK 302
++IW+V+ G C+ ++ + + + +NR I+ SSS DG LC +W
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV-----SSSYDG--LCRIWDTASGQC 183
Query: 303 WGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWE 338
L + + + SP+G +++A D TL+ W+
Sbjct: 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 14/204 (6%)
Query: 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW 140
+ G +S+ +S + + LA +++W A K + + GH ++ +W+
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 75
Query: 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
+ ++L S S DK++ DV S + H+ V ++ + NL+ SG D V +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS--GGGTQDGCIKIWNVQKGTCIHS 258
D + + KCL H V A+ FN S + DG +IW+ G C+ +
Sbjct: 135 D---VKTGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 259 V--DTKAQICGLEWNRHHKEILSG 280
+ D + ++++ + K IL+
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAA 210
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W +G+ +K ++G + ++WS D+ L L++WD + K ++ L+
Sbjct: 48 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 105
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V ++N +++ SGS D+S+ DV+ + + + AH+ V + ++ +G+
Sbjct: 106 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGS 163
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
L+ S D L +WD +S +CL D V + + P +LA+ T D +
Sbjct: 164 LIVSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTL 217
Query: 246 KIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
K+W+ KG C+ + + C + + G S + + +W
Sbjct: 218 KLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 273
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
+LQ T ++ + P + SAA D+T++ W++
Sbjct: 274 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 311
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 18/217 (8%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH K V++ ++ NG L S S DK +I I+ H + + WS++
Sbjct: 20 LAGHTKAVSSVKFSP-NGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVAWSSD 77
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
NLL S DD + +WD +SS KCL + H V + P Q N++ S G+ D
Sbjct: 78 SNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVS--GSFDES 131
Query: 245 IKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLC-LWKYPHMTK 302
++IW+V+ G C+ ++ + + + +NR I+ SSS DG LC +W
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV-----SSSYDG--LCRIWDTASGQC 184
Query: 303 WGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWE 338
L + + + SP+G +++A D TL+ W+
Sbjct: 185 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 14/204 (6%)
Query: 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW 140
+ G +S+ +S + + LA +++W A K + + GH ++ +W+
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 76
Query: 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
+ ++L S S DK++ DV S + H+ V ++ + NL+ SG D V +W
Sbjct: 77 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Query: 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS--GGGTQDGCIKIWNVQKGTCIHS 258
D + + KCL H V A+ FN S + DG +IW+ G C+ +
Sbjct: 136 D---VKTGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 187
Query: 259 V--DTKAQICGLEWNRHHKEILSG 280
+ D + ++++ + K IL+
Sbjct: 188 LIDDDNPPVSFVKFSPNGKYILAA 211
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W +G+ +K ++G + ++WS D+ L L++WD + K ++ L+
Sbjct: 50 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V ++N +++ SGS D+S+ DV+ + + + AH+ V + ++ +G+
Sbjct: 108 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGS 165
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
L+ S D L +WD +S +CL D V + + P +LA+ T D +
Sbjct: 166 LIVSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTL 219
Query: 246 KIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
K+W+ KG C+ + + C + + G S + + +W
Sbjct: 220 KLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
+LQ T ++ + P + SAA D+T++ W++
Sbjct: 276 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 18/217 (8%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH K V++ ++ NG L + S DK +I I+ H + + WS++
Sbjct: 22 LAGHTKAVSSVKFSP-NGEWLAASSADK-LIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
NLL S DD + +WD +SS KCL + H V + P Q N++ S G+ D
Sbjct: 80 SNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVS--GSFDES 133
Query: 245 IKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLC-LWKYPHMTK 302
++IW+V+ G C+ ++ + + + +NR I+ SSS DG LC +W
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV-----SSSYDG--LCRIWDTASGQC 186
Query: 303 WGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWE 338
L + + + SP+G +++A D TL+ W+
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 93/202 (46%), Gaps = 10/202 (4%)
Query: 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW 140
+ G +S+ +S + + LA +++W A K + + GH ++ +W+
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 78
Query: 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
+ ++L S S DK++ DV S + H+ V ++ + NL+ SG D V +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV- 259
D + + KCL H V A+ + +++S + DG +IW+ G C+ ++
Sbjct: 138 D---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLI 191
Query: 260 -DTKAQICGLEWNRHHKEILSG 280
D + ++++ + K IL+
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAA 213
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W +G+ +K ++G + ++WS D+ L L++WD + K ++ L+
Sbjct: 50 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V ++N +++ SGS D+S+ DV+ + + + AH+ V + ++ +G+
Sbjct: 108 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKT-LPAHSDPVSAVHFNRDGS 165
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
L+ S D L +WD +S +CL D V + + P +LA+ T D +
Sbjct: 166 LIVSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTL 219
Query: 246 KIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
K+W+ KG C+ + + C + + G S + + +W
Sbjct: 220 KLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
+LQ T ++ + P + SAA D+T++ W++
Sbjct: 276 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 18/221 (8%)
Query: 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLK 180
L+ L GH K V++ ++ NG L S S DK +I I+ H + +
Sbjct: 18 LMFTLAGHTKAVSSVKFSP-NGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240
WS++ NLL S DD + +WD +SS KCL + H V + P Q N++ S G+
Sbjct: 76 WSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVS--GS 129
Query: 241 QDGCIKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLC-LWKYP 298
D ++IW+V+ G C+ ++ + + + +NR I+ SSS DG LC +W
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIV-----SSSYDG--LCRIWDTA 182
Query: 299 HMTKWGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWE 338
L + + + SP+G +++A D TL+ W+
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 14/205 (6%)
Query: 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNH 139
+ + G +S+ +S + + LA +++W A K + + GH ++ +W+
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 140 WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199
+ ++L S S DK++ DV S + H+ V ++ + NL+ SG D V +
Sbjct: 79 -DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS--GGGTQDGCIKIWNVQKGTCIH 257
WD + + CL H V A+ FN S + DG +IW+ G C+
Sbjct: 137 WD---VKTGMCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 258 SV--DTKAQICGLEWNRHHKEILSG 280
++ D + ++++ + K IL+
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAA 213
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W +G+ +K ++G + ++WS D+ L L++WD + K ++ L+
Sbjct: 69 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 126
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V ++N +++ SGS D+S+ DV+ + + + AH+ V + ++ +G+
Sbjct: 127 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGS 184
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
L+ S D L +WD +S +CL D V + + P +LA+ T D +
Sbjct: 185 LIVSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTL 238
Query: 246 KIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
K+W+ KG C+ + + C + + G S + + +W
Sbjct: 239 KLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
+LQ T ++ + P + SAA D+T++ W++
Sbjct: 295 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 332
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 18/217 (8%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH K V++ ++ NG L S S DK +I I+ H + + WS++
Sbjct: 41 LAGHTKAVSSVKFSP-NGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVAWSSD 98
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
NLL S DD + +WD +SS KCL + H V + P Q N++ S G+ D
Sbjct: 99 SNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVS--GSFDES 152
Query: 245 IKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLC-LWKYPHMTK 302
++IW+V+ G C+ ++ + + + +NR I+ SSS DG LC +W
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV-----SSSYDG--LCRIWDTASGQC 205
Query: 303 WGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWE 338
L + + + SP+G +++A D TL+ W+
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 14/194 (7%)
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150
+S+ +S + + LA +++W A K + + GH ++ +W+ + ++L S S
Sbjct: 49 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASD 107
Query: 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210
DK++ DV S + H+ V ++ + NL+ SG D V +WD + + KC
Sbjct: 108 DKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD---VKTGKC 163
Query: 211 LHRFRDHRAAVKALAWCPYQFNVLAS--GGGTQDGCIKIWNVQKGTCIHSV--DTKAQIC 266
L H V A+ FN S + DG +IW+ G C+ ++ D +
Sbjct: 164 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 218
Query: 267 GLEWNRHHKEILSG 280
++++ + K IL+
Sbjct: 219 FVKFSPNGKYILAA 232
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W +G+ +K ++G + ++WS D+ L L++WD + K ++ L+
Sbjct: 71 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 128
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V ++N +++ SGS D+S+ DV+ + + + AH+ V + ++ +G+
Sbjct: 129 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGS 186
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
L+ S D L +WD +S +CL D V + + P +LA+ T D +
Sbjct: 187 LIVSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTL 240
Query: 246 KIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
K+W+ KG C+ + + C + + G S + + +W
Sbjct: 241 KLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 296
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
+LQ T ++ + P + SAA D+T++ W++
Sbjct: 297 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 334
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 18/217 (8%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH K V++ ++ NG L S S DK +I I+ H + + WS++
Sbjct: 43 LAGHTKAVSSVKFSP-NGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVAWSSD 100
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
NLL S DD + +WD +SS KCL + H V + P Q N++ S G+ D
Sbjct: 101 SNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVS--GSFDES 154
Query: 245 IKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLC-LWKYPHMTK 302
++IW+V+ G C+ ++ + + + +NR I+ SSS DG LC +W
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV-----SSSYDG--LCRIWDTASGQC 207
Query: 303 WGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWE 338
L + + + SP+G +++A D TL+ W+
Sbjct: 208 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 14/194 (7%)
Query: 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150
+S+ +S + + LA +++W A K + + GH ++ +W+ + ++L S S
Sbjct: 51 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASD 109
Query: 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210
DK++ DV S + H+ V ++ + NL+ SG D V +WD + + KC
Sbjct: 110 DKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD---VKTGKC 165
Query: 211 LHRFRDHRAAVKALAWCPYQFNVLAS--GGGTQDGCIKIWNVQKGTCIHSV--DTKAQIC 266
L H V A+ FN S + DG +IW+ G C+ ++ D +
Sbjct: 166 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 220
Query: 267 GLEWNRHHKEILSG 280
++++ + K IL+
Sbjct: 221 FVKFSPNGKYILAA 234
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W +G+ +K ++G + ++WS D+ L L++WD + K ++ L+
Sbjct: 50 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V ++N +++ SGS D+S+ DV+ + + + AH+ V + ++ +G+
Sbjct: 108 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKT-LPAHSDPVSAVHFNRDGS 165
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
L+ S D L +WD +S +CL D V + + P +LA+ T D +
Sbjct: 166 LIVSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNDL 219
Query: 246 KIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
K+W+ KG C+ + + C + + G S + + +W
Sbjct: 220 KLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
+LQ T ++ + P + SAA D+T++ W++
Sbjct: 276 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 18/221 (8%)
Query: 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLK 180
L+ L GH K V++ ++ NG L S S DK +I I+ H + +
Sbjct: 18 LMFTLAGHTKAVSSVKFSP-NGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240
WS++ NLL S DD + +WD +SS KCL + H V + P Q N++ S G+
Sbjct: 76 WSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVS--GS 129
Query: 241 QDGCIKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLC-LWKYP 298
D ++IW+V+ G C+ ++ + + + +NR I+ SSS DG LC +W
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIV-----SSSYDG--LCRIWDTA 182
Query: 299 HMTKWGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWE 338
L + + + SP+G +++A D L+ W+
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 14/205 (6%)
Query: 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNH 139
+ + G +S+ +S + + LA +++W A K + + GH ++ +W+
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 140 WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199
+ ++L S S DK++ DV S + H+ V ++ + NL+ SG D V +
Sbjct: 79 -DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS--GGGTQDGCIKIWNVQKGTCIH 257
WD + + CL H V A+ FN S + DG +IW+ G C+
Sbjct: 137 WD---VKTGMCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 258 SV--DTKAQICGLEWNRHHKEILSG 280
++ D + ++++ + K IL+
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAA 213
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W +G+ +K ++G + ++WS D+ L L++WD + K ++ L+
Sbjct: 50 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V ++N +++ SGS D+S+ DV+ + + + AH+ V + ++ +G+
Sbjct: 108 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGS 165
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
L+ S D L +WD +S +CL D V + + P +LA+ T D +
Sbjct: 166 LIVSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTL 219
Query: 246 KIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
K+W+ KG C+ + + C + + G S + + +W
Sbjct: 220 KLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
+LQ T ++ + P + SAA D+T++ +++
Sbjct: 276 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLYKS 313
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 18/217 (8%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH K V++ ++ NG L S S DK +I I+ H + + WS++
Sbjct: 22 LAGHTKAVSSVKFSP-NGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
NLL S DD + +WD +SS KCL + H V + P Q N++ S G+ D
Sbjct: 80 SNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVS--GSFDES 133
Query: 245 IKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLC-LWKYPHMTK 302
++IW+V+ G C+ ++ + + + +NR I+ SSS DG LC +W
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV-----SSSYDG--LCRIWDTASGQC 186
Query: 303 WGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWE 338
L + + + SP+G +++A D TL+ W+
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 93/202 (46%), Gaps = 10/202 (4%)
Query: 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW 140
+ G +S+ +S + + LA +++W A K + + GH ++ +W+
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 78
Query: 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
+ ++L S S DK++ DV S + H+ V ++ + NL+ SG D V +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV- 259
D + + KCL H V A+ + +++S + DG +IW+ G C+ ++
Sbjct: 138 D---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLI 191
Query: 260 -DTKAQICGLEWNRHHKEILSG 280
D + ++++ + K IL+
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAA 213
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W +G+ +K ++G + ++WS D+ L L++WD + K ++ L+
Sbjct: 50 IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186
GH V ++N +++ SGS D+S+ DV+ + + + AH+ V + ++ +G+
Sbjct: 108 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGS 165
Query: 187 LLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
L+ S D L +WD +S +CL D V + + P +LA+ T D +
Sbjct: 166 LIVSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTL 219
Query: 246 KIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW 303
K+W+ KG C+ + + C + + G S + + +W
Sbjct: 220 KLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 304 GELQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEA 339
+LQ T ++ + P + SAA D+T++ +++
Sbjct: 276 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLFKS 313
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 18/217 (8%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH K V++ ++ NG L S S DK +I I+ H + + WS++
Sbjct: 22 LAGHTKAVSSVKFSP-NGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
NLL S DD + +WD +SS KCL + H V + P Q N++ S G+ D
Sbjct: 80 SNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVS--GSFDES 133
Query: 245 IKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLC-LWKYPHMTK 302
++IW+V+ G C+ ++ + + + +NR I+ SSS DG LC +W
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV-----SSSYDG--LCRIWDTASGQC 186
Query: 303 WGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWE 338
L + + + SP+G +++A D TL+ W+
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 93/202 (46%), Gaps = 10/202 (4%)
Query: 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW 140
+ G +S+ +S + + LA +++W A K + + GH ++ +W+
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS- 78
Query: 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
+ ++L S S DK++ DV S + H+ V ++ + NL+ SG D V +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV- 259
D + + KCL H V A+ + +++S + DG +IW+ G C+ ++
Sbjct: 138 D---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLI 191
Query: 260 -DTKAQICGLEWNRHHKEILSG 280
D + ++++ + K IL+
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAA 213
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 137/279 (49%), Gaps = 29/279 (10%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ LW + NG++ L +TG +++S D +T+A ++LW+ +L++ L
Sbjct: 81 VKLWNR-NGQL--LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 136
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSII--NHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
GH V +++ +G + S S DK++ N + ++ +T H++ V G+ +S +
Sbjct: 137 GHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLT----GHSSSVWGVAFSPD 191
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
G +AS DD V +W+ + + L H ++V+ +A+ P + ++ + D
Sbjct: 192 GQTIASASDDKTVKLWNR----NGQLLQTLTGHSSSVRGVAFSPDGQTIASA---SDDKT 244
Query: 245 IKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLW-KYPHMTK 302
+K+WN + G + ++ + + G+ + G +S+ D + + LW + + +
Sbjct: 245 VKLWN-RNGQLLQTLTGHSSSVNGVAFRPD------GQTIASASDDKTVKLWNRNGQLLQ 297
Query: 303 WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341
L +S + ++ SPDG T+ SA+ D+T++ W G
Sbjct: 298 --TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 334
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 136/276 (49%), Gaps = 29/276 (10%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ LW + NG Q L +TG +++S D +T+A ++LW+ +L++ L
Sbjct: 327 VKLWNR-NG--QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 382
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSII--NHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
GH V +++ +G + S S DK++ N + ++ +T H++ V G+ +S +
Sbjct: 383 GHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLT----GHSSSVWGVAFSPD 437
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
+AS DD V +W+ + + L H ++V+ +A+ P + ++ + D
Sbjct: 438 DQTIASASDDKTVKLWNRN----GQLLQTLTGHSSSVRGVAFSPDGQTIASA---SDDKT 490
Query: 245 IKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLW-KYPHMTK 302
+K+WN + G + ++ + + G+ ++ G +S+ D + + LW + + +
Sbjct: 491 VKLWN-RNGQLLQTLTGHSSSVRGVAFSPD------GQTIASASDDKTVKLWNRNGQLLQ 543
Query: 303 WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338
L +S + ++ SPDG T+ SA++D+T++ W
Sbjct: 544 --TLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 137/279 (49%), Gaps = 29/279 (10%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ LW + NG++ L +TG +++ D +T+A ++LW+ +L++ L
Sbjct: 245 VKLWNR-NGQL--LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLT 300
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSII--NHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
GH V +++ +G + S S DK++ N + + +T H++ V G+ +S +
Sbjct: 301 GHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQHLQTLT----GHSSSVWGVAFSPD 355
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
G +AS DD V +W+ + + L H ++V+ +A+ P + ++ + D
Sbjct: 356 GQTIASASDDKTVKLWNR----NGQLLQTLTGHSSSVRGVAFSPDGQTIASA---SDDKT 408
Query: 245 IKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLW-KYPHMTK 302
+K+WN + G + ++ + + G+ ++ + I +S+ D + + LW + + +
Sbjct: 409 VKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTI------ASASDDKTVKLWNRNGQLLQ 461
Query: 303 WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341
L +S + ++ SPDG T+ SA+ D+T++ W G
Sbjct: 462 --TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 498
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 88/176 (50%), Gaps = 18/176 (10%)
Query: 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC 227
R+ AH++ V G+ +S +G +AS DD V +W+ + + L H ++V +A+
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLTGHSSSVWGVAFS 66
Query: 228 PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSS 286
P + ++ + D +K+WN + G + ++ + + G+ ++ G +S+
Sbjct: 67 PDGQTIASA---SDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPD------GQTIASA 116
Query: 287 GDGQKLCLW-KYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341
D + + LW + + + L +S + ++ SPDG T+ SA+ D+T++ W G
Sbjct: 117 SDDKTVKLWNRNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 170
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 137/303 (45%), Gaps = 51/303 (16%)
Query: 75 GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWD-----------AETSKLIR 123
G+++ +K+ E + + Q+A +A +S + ++D E +R
Sbjct: 117 GKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLR 176
Query: 124 NLEGHDKRVATASWN-HWNGHILTSGSQDKSIINHDVRVSNNVTSRINA------HTAEV 176
L GH K SWN + NG++L S S D +I D+ + I+A HTA V
Sbjct: 177 -LRGHQKEGYGLSWNPNLNGYLL-SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 234
Query: 177 CGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235
+ W +L S DD + +WD ++SK H H A V L++ PY +LA
Sbjct: 235 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 294
Query: 236 SGGGTQDGCIKIWNVQKGTC-IHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLC 293
+G D + +W+++ +HS ++ K +I ++W+ H++ IL +SSG ++L
Sbjct: 295 TGSA--DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL-----ASSGTDRRLH 347
Query: 294 LWKYPHMTKWGELQH-----------------QTSRILELSQSPDGL-TVVSAAADETLR 335
+W ++K GE Q T++I + S +P+ + S + D ++
Sbjct: 348 VWD---LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404
Query: 336 FWE 338
W+
Sbjct: 405 VWQ 407
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 110 KLQLWDAE---TSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166
KL +WD TSK ++ H V S+N ++ IL +GS DK++ D+R
Sbjct: 255 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 314
Query: 167 SRINAHTAEVCGLKWS-NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD--------- 216
+H E+ ++WS + +LAS G D +HVWD SK+ + D
Sbjct: 315 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 374
Query: 217 --HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254
H A + +W P + ++ S ++D +++W + +
Sbjct: 375 GGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMAENV 412
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 137/303 (45%), Gaps = 51/303 (16%)
Query: 75 GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWD-----------AETSKLIR 123
G+++ +K+ E + + Q+A +A +S + ++D E +R
Sbjct: 119 GKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLR 178
Query: 124 NLEGHDKRVATASWN-HWNGHILTSGSQDKSIINHDVRVSNNVTSRINA------HTAEV 176
L GH K SWN + NG++L S S D +I D+ + I+A HTA V
Sbjct: 179 -LRGHQKEGYGLSWNPNLNGYLL-SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 236
Query: 177 CGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235
+ W +L S DD + +WD ++SK H H A V L++ PY +LA
Sbjct: 237 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 296
Query: 236 SGGGTQDGCIKIWNVQKGTC-IHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLC 293
+G D + +W+++ +HS ++ K +I ++W+ H++ IL +SSG ++L
Sbjct: 297 TGSA--DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL-----ASSGTDRRLH 349
Query: 294 LWKYPHMTKWGELQH-----------------QTSRILELSQSPDGL-TVVSAAADETLR 335
+W ++K GE Q T++I + S +P+ + S + D ++
Sbjct: 350 VWD---LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 406
Query: 336 FWE 338
W+
Sbjct: 407 VWQ 409
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 110 KLQLWDAE---TSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166
KL +WD TSK ++ H V S+N ++ IL +GS DK++ D+R
Sbjct: 257 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 316
Query: 167 SRINAHTAEVCGLKWS-NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD--------- 216
+H E+ ++WS + +LAS G D +HVWD SK+ + D
Sbjct: 317 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 376
Query: 217 --HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254
H A + +W P + ++ S ++D +++W + +
Sbjct: 377 GGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMAENV 414
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 137/303 (45%), Gaps = 51/303 (16%)
Query: 75 GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWD-----------AETSKLIR 123
G+++ +K+ E + + Q+A +A +S + ++D E +R
Sbjct: 121 GKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLR 180
Query: 124 NLEGHDKRVATASWN-HWNGHILTSGSQDKSIINHDVRVSNNVTSRINA------HTAEV 176
L GH K SWN + NG++L S S D +I D+ + I+A HTA V
Sbjct: 181 -LRGHQKEGYGLSWNPNLNGYLL-SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 238
Query: 177 CGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235
+ W +L S DD + +WD ++SK H H A V L++ PY +LA
Sbjct: 239 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 298
Query: 236 SGGGTQDGCIKIWNVQKGTC-IHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLC 293
+G D + +W+++ +HS ++ K +I ++W+ H++ IL +SSG ++L
Sbjct: 299 TGSA--DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL-----ASSGTDRRLH 351
Query: 294 LWKYPHMTKWGELQH-----------------QTSRILELSQSPDGL-TVVSAAADETLR 335
+W ++K GE Q T++I + S +P+ + S + D ++
Sbjct: 352 VWD---LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 408
Query: 336 FWE 338
W+
Sbjct: 409 VWQ 411
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 110 KLQLWDAE---TSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166
KL +WD TSK ++ H V S+N ++ IL +GS DK++ D+R
Sbjct: 259 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 318
Query: 167 SRINAHTAEVCGLKWS-NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD--------- 216
+H E+ ++WS + +LAS G D +HVWD SK+ + D
Sbjct: 319 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 378
Query: 217 --HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254
H A + +W P + ++ S ++D +++W + +
Sbjct: 379 GGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMAENV 416
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 113/242 (46%), Gaps = 39/242 (16%)
Query: 125 LEGHDKRVATASWN-HWNGHILTSGSQDKSIINHDVRVSNNVTSRINA------HTAEVC 177
L GH K SWN + +GH+L S S D +I D+ ++A HTA V
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLL-SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 178 GLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236
+ W +L S DD + +WD ++SK H H A V L++ PY +LA+
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 237 GGGTQDGCIKIWNVQKGTC-IHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294
G D + +W+++ +HS ++ K +I ++W+ H++ IL +SSG ++L +
Sbjct: 292 GSA--DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL-----ASSGTDRRLNV 344
Query: 295 WKYPHMTKWGELQH-----------------QTSRILELSQSPDGLTVV-SAAADETLRF 336
W ++K GE Q T++I + S +P+ V+ S + D ++
Sbjct: 345 WD---LSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQV 401
Query: 337 WE 338
W+
Sbjct: 402 WQ 403
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 17/158 (10%)
Query: 110 KLQLWDAE---TSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166
KL +WD TSK +++ H V S+N ++ IL +GS DK++ D+R
Sbjct: 251 KLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 310
Query: 167 SRINAHTAEVCGLKWS-NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD--------- 216
+H E+ ++WS + +LAS G D ++VWD SK+ + D
Sbjct: 311 HSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIH 370
Query: 217 --HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252
H A + +W P + V+ S ++D +++W + +
Sbjct: 371 GGHTAKISDFSWNPNEPWVICS--VSEDNIMQVWQMAE 406
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 14/155 (9%)
Query: 105 GYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN 164
G L++W+AET + I L GH +T H + + SGS+D ++ D+ +
Sbjct: 175 GSTDRTLKVWNAETGECIHTLYGH---TSTVRCMHLHEKRVVSGSRDATLRVWDIE-TGQ 230
Query: 165 VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKAL 224
+ H A V +++ +G + SG D +V VWD + CLH + H V +L
Sbjct: 231 CLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE---TETCLHTLQGHTNRVYSL 285
Query: 225 AWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV 259
QF+ + G+ D I++W+V+ G CIH++
Sbjct: 286 -----QFDGIHVVSGSLDTSIRVWDVETGNCIHTL 315
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 17/167 (10%)
Query: 98 DAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINH 157
D + + G +++WD ET + L+GH RV + ++G + SGS D SI
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL---QFDGIHVVSGSLDTSIRVW 304
Query: 158 DVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR-- 215
DV N + + + H + G++ + N+L SG D+ V +WD + + +CL +
Sbjct: 305 DVETGNCIHT-LTGHQSLTSGMELKD--NILVSGNADSTVKIWD---IKTGQCLQTLQGP 358
Query: 216 -DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261
H++AV L QFN + DG +K+W+++ G I ++ T
Sbjct: 359 NKHQSAVTCL-----QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT 400
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 89/191 (46%), Gaps = 19/191 (9%)
Query: 70 WKQENGEVQKLLKVTGEDD-FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
W++ + K+LK G DD T + + + G + L++W A T K +R L GH
Sbjct: 103 WRRGELKSPKVLK--GHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGH 158
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188
V ++ +I+ SGS D+++ + + + + HT+ V + + +
Sbjct: 159 TGGVWSS---QMRDNIIISGSTDRTLKVWNAETGECIHT-LYGHTSTVRCMHLHEKR--V 212
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248
SG D + VWD + + +CLH H AAV+ + Q++ G D +K+W
Sbjct: 213 VSGSRDATLRVWD---IETGQCLHVLMGHVAAVRCV-----QYDGRRVVSGAYDFMVKVW 264
Query: 249 NVQKGTCIHSV 259
+ + TC+H++
Sbjct: 265 DPETETCLHTL 275
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 86/211 (40%), Gaps = 55/211 (26%)
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP-YQFNVLASGGGTQDG 243
GN + SG DDN + VW + KCL H V W + N++ SG + D
Sbjct: 129 GNRIVSGSDDNTLKVWS---AVTGKCLRTLVGHTGGV----WSSQMRDNIIISG--STDR 179
Query: 244 CIKIWNVQKGTCIHSV--DTKAQICGLEWNRHHKEILSGHGFSS---------------- 285
+K+WN + G CIH++ T C + H K ++SG ++
Sbjct: 180 TLKVWNAETGECIHTLYGHTSTVRC---MHLHEKRVVSGSRDATLRVWDIETGQCLHVLM 236
Query: 286 ---------SGDGQKLCLWKYPHMTK-WGE--------LQHQTSRILELSQSPDGLTVVS 327
DG+++ Y M K W LQ T+R+ L DG+ VVS
Sbjct: 237 GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVS 294
Query: 328 AAADETLRFWEAFGPSGSGDFVSHLDGLLSL 358
+ D ++R W+ +G+ + L G SL
Sbjct: 295 GSLDTSIRVWDV----ETGNCIHTLTGHQSL 321
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/171 (19%), Positives = 71/171 (41%), Gaps = 11/171 (6%)
Query: 16 YSPRRLLGSPTDF-----DFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLW 70
Y RR++ DF D + E + N YS D ++++ +L + +W
Sbjct: 247 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVW 304
Query: 71 KQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDK 130
E G L TG + + + L G S +++WD +T + ++ L+G +K
Sbjct: 305 DVETGNCIHTL--TGHQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQTLQGPNK 360
Query: 131 RVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKW 181
+ + +N + + + S D ++ D++ + + + + G+ W
Sbjct: 361 HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW 411
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 136/303 (44%), Gaps = 51/303 (16%)
Query: 75 GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWD-----------AETSKLIR 123
G+++ +K+ E + + Q+ +A +S + ++D E + +R
Sbjct: 115 GKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLR 174
Query: 124 NLEGHDKRVATASWN-HWNGHILTSGSQDKSIINHDVRVSNNVTSRINA------HTAEV 176
L GH K SWN + +GH+L S S D ++ D+ ++A H+A V
Sbjct: 175 -LRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVV 232
Query: 177 CGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235
+ W +L S DD + +WD ++SK H H A V L++ PY +LA
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
Query: 236 SGGGTQDGCIKIWNVQKGTC-IHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLC 293
+G D + +W+++ +H+ ++ K +I + W+ H++ IL +SSG ++L
Sbjct: 293 TGSA--DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETIL-----ASSGTDRRLN 345
Query: 294 LWKYPHMTKWGELQH-----------------QTSRILELSQSPDGLTVV-SAAADETLR 335
+W ++K GE Q T++I + S +P+ V+ S + D ++
Sbjct: 346 VWD---LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 402
Query: 336 FWE 338
W+
Sbjct: 403 IWQ 405
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 17/158 (10%)
Query: 110 KLQLWDAE---TSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166
KL +WD TSK ++ H V S+N ++ IL +GS DK++ D+R
Sbjct: 253 KLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 312
Query: 167 SRINAHTAEVCGLKWS-NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD--------- 216
+H E+ + WS + +LAS G D ++VWD SK+ + D
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 217 --HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252
H A + +W P + V+ S ++D ++IW + +
Sbjct: 373 GGHTAKISDFSWNPNEPWVICS--VSEDNIMQIWQMAE 408
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 119/289 (41%), Gaps = 32/289 (11%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
L ++K E GE KLL + +D ++S D +A K+++WD+ T KL+ +
Sbjct: 646 LQVFKAETGE--KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 703
Query: 127 GHDKRVATASWNHWNGH-ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185
H ++V + + + H +L +GS D + D+ + + HT V ++S +
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDD 762
Query: 186 NLLASGGDDNLVHVWDHSKMSSSKCLH--RF--------RDHRAAVKALAWCPYQFNVLA 235
LLAS D + +WD + K ++ RF D VK +W ++
Sbjct: 763 ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 822
Query: 236 SGGGTQDGCIKIWNVQKGTCIHSVDT----KAQICGLEWNRHHKEI-LSGHGFSSSGDGQ 290
+ + ++++ + + T Q C H I LS +
Sbjct: 823 AAKNK----VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE------ 872
Query: 291 KLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
LW K + + S + + SPDG + ++A+ D+T+R WE
Sbjct: 873 ---LWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 918
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 87/174 (50%), Gaps = 18/174 (10%)
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
+SQD + +A LQ++ AET + + +++ H+ V +++ + +I T + K
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK-- 687
Query: 155 INHDVRVSNNVTSRI----NAHTAEVCGLKWSNEGN--LLASGGDDNLVHVWDHSKMSSS 208
V++ ++ T ++ + H+ +V ++N+ N LLA+G +D + +WD ++
Sbjct: 688 ----VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD---LNQK 740
Query: 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK 262
+C + H +V + P +LAS DG +++W+V+ S++ K
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDD-ELLASCSA--DGTLRLWDVRSANERKSINVK 791
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 18/170 (10%)
Query: 93 ISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK 152
I ++ D KTL S +Q+W+ +T + L+ H + V + L S S D
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVK--DFRLLQDSRLLSWSFDG 1072
Query: 153 SIINHDVRVSNNVTSRI----NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS 208
+ V+V N +T RI H V S++ +S D +W +S
Sbjct: 1073 T-----VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP- 1126
Query: 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHS 258
LH + H V+ A + + + G +G I+IWNV G +HS
Sbjct: 1127 --LHELKGHNGCVRCSA---FSLDGILLATGDDNGEIRIWNVSDGQLLHS 1171
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 11/172 (6%)
Query: 169 INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP 228
+ HT V +S +G +AS G D + V+ ++ + D +A + C
Sbjct: 618 VRPHTDAVYHACFSQDGQRIASCGADKTLQVF------KAETGEKLLDIKAHEDEVLCCA 671
Query: 229 YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGD 288
+ + + D +KIW+ G +H+ D ++ + N H S H ++G
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSE----QVNCCHFTNKSNHLLLATGS 727
Query: 289 GQK-LCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
L LW + T+ + SPD + S +AD TLR W+
Sbjct: 728 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 94 SWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-GHDKRVATASWNHWNGHILTSGSQD- 151
SWS D + V +K+ L+D TS L+ + GH + ++ ++ + + SQ
Sbjct: 812 SWSADGDKIIVA-AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC 870
Query: 152 KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205
+ N D R+ + H + V G+ +S +G+ + DD + VW+ K+
Sbjct: 871 VELWNIDSRLK---VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 921
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 43/191 (22%)
Query: 162 SNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD---------HSKMSSSKCLH 212
+N V S H V ++++ +G L S +D+++ VW+ + + K
Sbjct: 999 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFR 1058
Query: 213 RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNR 272
+D R L+W + DG +K+WNV G ++
Sbjct: 1059 LLQDSRL----LSW-------------SFDGTVKVWNVITGRIER-----------DFTC 1090
Query: 273 HHKEILS------GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326
H +LS FSS+ + +W + ++ EL+ + + S DG+ +
Sbjct: 1091 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA 1150
Query: 327 SAAADETLRFW 337
+ + +R W
Sbjct: 1151 TGDDNGEIRIW 1161
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 119/289 (41%), Gaps = 32/289 (11%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
L ++K E GE KLL + +D ++S D +A K+++WD+ T KL+ +
Sbjct: 639 LQVFKAETGE--KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696
Query: 127 GHDKRVATASWNHWNGH-ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185
H ++V + + + H +L +GS D + D+ + + HT V ++S +
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDD 755
Query: 186 NLLASGGDDNLVHVWDHSKMSSSKCLH--RF--------RDHRAAVKALAWCPYQFNVLA 235
LLAS D + +WD + K ++ RF D VK +W ++
Sbjct: 756 ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 815
Query: 236 SGGGTQDGCIKIWNVQKGTCIHSVDT----KAQICGLEWNRHHKEI-LSGHGFSSSGDGQ 290
+ + ++++ + + T Q C H I LS +
Sbjct: 816 AAKNK----VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE------ 865
Query: 291 KLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
LW K + + S + + SPDG + ++A+ D+T+R WE
Sbjct: 866 ---LWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 87/174 (50%), Gaps = 18/174 (10%)
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
+SQD + +A LQ++ AET + + +++ H+ V +++ + +I T + K
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK-- 680
Query: 155 INHDVRVSNNVTSRI----NAHTAEVCGLKWSNEGN--LLASGGDDNLVHVWDHSKMSSS 208
V++ ++ T ++ + H+ +V ++N+ N LLA+G +D + +WD ++
Sbjct: 681 ----VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD---LNQK 733
Query: 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK 262
+C + H +V + P +LAS DG +++W+V+ S++ K
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDD-ELLASCSA--DGTLRLWDVRSANERKSINVK 784
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 18/170 (10%)
Query: 93 ISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK 152
I ++ D KTL S +Q+W+ +T + L+ H + V + L S S D
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVK--DFRLLQDSRLLSWSFDG 1065
Query: 153 SIINHDVRVSNNVTSRI----NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS 208
+ V+V N +T RI H V S++ +S D +W +S
Sbjct: 1066 T-----VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP- 1119
Query: 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHS 258
LH + H V+ A + + + G +G I+IWNV G +HS
Sbjct: 1120 --LHELKGHNGCVRCSA---FSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 11/172 (6%)
Query: 169 INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP 228
+ HT V +S +G +AS G D + V+ ++ + D +A + C
Sbjct: 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVF------KAETGEKLLDIKAHEDEVLCCA 664
Query: 229 YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGD 288
+ + + D +KIW+ G +H+ D ++ + N H S H ++G
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSE----QVNCCHFTNKSNHLLLATGS 720
Query: 289 GQK-LCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
L LW + T+ + SPD + S +AD TLR W+
Sbjct: 721 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 94 SWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-GHDKRVATASWNHWNGHILTSGSQD- 151
SWS D + V +K+ L+D TS L+ + GH + ++ ++ + + SQ
Sbjct: 805 SWSADGDKIIVA-AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC 863
Query: 152 KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205
+ N D R+ + H + V G+ +S +G+ + DD + VW+ K+
Sbjct: 864 VELWNIDSRLK---VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 914
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 43/191 (22%)
Query: 162 SNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD---------HSKMSSSKCLH 212
+N V S H V ++++ +G L S +D+++ VW+ + + K
Sbjct: 992 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFR 1051
Query: 213 RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNR 272
+D R L+W + DG +K+WNV G ++
Sbjct: 1052 LLQDSRL----LSW-------------SFDGTVKVWNVITGRIER-----------DFTC 1083
Query: 273 HHKEILS------GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326
H +LS FSS+ + +W + ++ EL+ + + S DG+ +
Sbjct: 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA 1143
Query: 327 SAAADETLRFW 337
+ + +R W
Sbjct: 1144 TGDDNGEIRIW 1154
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 118/254 (46%), Gaps = 33/254 (12%)
Query: 75 GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWD-----------AETSKLIR 123
G+++ +K+ E + + Q+ +A +S + ++D E + +R
Sbjct: 115 GKIECEIKINHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLR 174
Query: 124 NLEGHDKRVATASWN-HWNGHILTSGSQDKSIINHDVRVSNNVTSRINA------HTAEV 176
L GH K SWN + +GH+L S S D ++ D+ ++A H+A V
Sbjct: 175 -LRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVV 232
Query: 177 CGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235
+ W +L S DD + +WD ++SK H H A V L++ PY +LA
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
Query: 236 SGGGTQDGCIKIWNVQKGTC-IHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLC 293
+G D + +W+++ +H+ ++ K +I + W+ H++ IL +SSG ++L
Sbjct: 293 TGSA--DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETIL-----ASSGTDRRLN 345
Query: 294 LWKYPHMTKWGELQ 307
+W ++K GE Q
Sbjct: 346 VWD---LSKIGEEQ 356
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 17/154 (11%)
Query: 110 KLQLWDAE---TSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166
KL +WD TSK ++ H V S+N ++ IL +GS DK++ D+R
Sbjct: 253 KLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 312
Query: 167 SRINAHTAEVCGLKWS-NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD--------- 216
+H E+ + WS + +LAS G D ++VWD SK+ + D
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 217 --HRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248
H A + +W P + V+ S ++D +IW
Sbjct: 373 GGHTAKISDFSWNPNEPWVICS--VSEDNIXQIW 404
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 93/230 (40%), Gaps = 24/230 (10%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
L GH V T + + + +G+ DK I +D ++ +++ H V LK+++
Sbjct: 117 LRGHMTSVITCL--QFEDNYVITGADDKMIRVYD-SINKKFLLQLSGHDGGVWALKYAH- 172
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
G +L SG D V VWD K C H F H + V+ L Y+ N+ G++D
Sbjct: 173 GGILVSGSTDRTVRVWDIKK---GCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNT 228
Query: 245 IKIWNVQKGTCI-------------HSVDTKAQICG-LEWNRHHKEILSGHG--FSSSGD 288
+ +W + K + + H+ + G L + +SGHG S
Sbjct: 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 288
Query: 289 GQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338
L +W M L T RI + +SA+ D T+R W+
Sbjct: 289 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 29/247 (11%)
Query: 111 LQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN 170
++++D+ K + L GHD V + H G IL SGS D+++ D++ T
Sbjct: 144 IRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWDIK-KGCCTHVFE 200
Query: 171 AHTAEVCGLKWSNEGNL--LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP 228
H + V L N+ + +G DN +HVW K SS D+ P
Sbjct: 201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260
Query: 229 YQFNVL---------ASG------GGTQDGCIKIWNVQKGTCIHSVDTKA-QICGLEWNR 272
Y VL SG G+ D + +W+V + C++ + +I ++
Sbjct: 261 YFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 320
Query: 273 HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE 332
K +S +S D + +W + LQ T+ + L S L VSAAAD
Sbjct: 321 ERKRCIS-----ASMD-TTIRIWDLENGELMYTLQGHTALVGLLRLSDKFL--VSAAADG 372
Query: 333 TLRFWEA 339
++R W+A
Sbjct: 373 SIRGWDA 379
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 87/212 (41%), Gaps = 32/212 (15%)
Query: 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNH 139
LL+++G D ++ ++ L G +++WD + EGH+ V
Sbjct: 155 LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 213
Query: 140 W-NGHILTSGSQDKSI----------------------INHDVRVSNNVTSRINAHTAEV 176
+ N + +GS+D ++ + H + + H A V
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273
Query: 177 CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236
+ S GN++ SG DN + VWD ++M KCL+ H + + + + +++
Sbjct: 274 RTV--SGHGNIVVSGSYDNTLIVWDVAQM---KCLYILSGHTDRIYSTIYDHERKRCISA 328
Query: 237 GGGTQDGCIKIWNVQKGTCIHSVDTKAQICGL 268
+ D I+IW+++ G ++++ + GL
Sbjct: 329 ---SMDTTIRIWDLENGELMYTLQGHTALVGL 357
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 7/123 (5%)
Query: 75 GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVAT 134
+++ L ++G D S + + K M + +++WD E +L+ L+GH V
Sbjct: 298 AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL 357
Query: 135 ASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGL-KWSNEGNLLASGGD 193
+ L S + D SI D +N+ + + + H + + + N+L SG +
Sbjct: 358 L---RLSDKFLVSAAADGSIRGWD---ANDYSRKFSYHHTNLSAITTFYVSDNILVSGSE 411
Query: 194 DNL 196
+
Sbjct: 412 NQF 414
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/322 (20%), Positives = 138/322 (42%), Gaps = 33/322 (10%)
Query: 34 ARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSI 93
+R++ P+ Y++ + G+ I + L ++K E GE KLL++ +D
Sbjct: 613 SRLVVRPHTDAVYHACFSEDGQR-IASCGADKTLQVFKAETGE--KLLEIKAHEDEVLCC 669
Query: 94 SWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGH-ILTSGSQDK 152
++S D + +A + K+++W++ T +L+ + H ++V + + + H +L +GS D
Sbjct: 670 AFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDC 729
Query: 153 SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLH 212
+ D+ + + HT V ++S + LLAS D + +WD + + K ++
Sbjct: 730 FLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSIN 788
Query: 213 --RF--------RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT- 261
+F D VK +W ++ + I ++++ + + T
Sbjct: 789 VKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK----IFLFDIHTSGLLGEIHTG 844
Query: 262 ---KAQICGLEWNRHHKEI-LSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELS 317
Q C H + LS + LW +K + + S + +
Sbjct: 845 HHSTIQYCDFSPQNHLAVVALSQYCVE---------LWNTDSRSKVADCRGHLSWVHGVM 895
Query: 318 QSPDGLTVVSAAADETLRFWEA 339
SPDG + ++++ D+T+R WE
Sbjct: 896 FSPDGSSFLTSSDDQTIRLWET 917
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 117/285 (41%), Gaps = 32/285 (11%)
Query: 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154
+S+D + +A LQ++ AET + + ++ H+ V +++ + I T
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCS------ 682
Query: 155 INHDVRVSNNVTSRI----NAHTAEVCGLKWSNEGN--LLASGGDDNLVHVWDHSKMSSS 208
++ V++ N++T + + H+ +V ++N + LLA+G D + +WD ++
Sbjct: 683 VDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD---LNQK 739
Query: 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGL 268
+C + H +V + P +LAS DG +K+W+ S++ K L
Sbjct: 740 ECRNTMFGHTNSVNHCRFSPDD-KLLASCSA--DGTLKLWDATSANERKSINVKQFFLNL 796
Query: 269 EWNRHHKEILSGHGFSSSGDG--------QKLCLWKYPHMTKWGEL---QHQTSRILELS 317
E + E++ S S DG K+ L+ GE+ H T + +
Sbjct: 797 EDPQEDMEVIVK-CCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDF- 854
Query: 318 QSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362
SP V A + + W S D HL + + SP
Sbjct: 855 -SPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSP 898
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 94 SWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-GHDKRVATASWNHWNGHILTSGSQD- 151
SWS D + V +K+ L+D TS L+ + GH + ++ N + + SQ
Sbjct: 811 SWSADGARIMVA-AKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYC 869
Query: 152 KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205
+ N D R + + H + V G+ +S +G+ + DD + +W+ K+
Sbjct: 870 VELWNTDSR---SKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKV 920
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 31/186 (16%)
Query: 161 VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAA 220
V+N + H V ++++ + L S DD + VW+ KC+ R H+
Sbjct: 997 VNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN---WQLDKCIF-LRGHQET 1052
Query: 221 VKALAWCPYQFNVLASG---GGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEI 277
VK F +L + + DG +K+WN+ G K +C H +
Sbjct: 1053 VK-------DFRLLKNSRLLSWSFDGTVKVWNIITGN-----KEKDFVC------HQGTV 1094
Query: 278 LS------GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD 331
LS FSS+ + +W + + EL+ + + S D + + +
Sbjct: 1095 LSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDN 1154
Query: 332 ETLRFW 337
+R W
Sbjct: 1155 GEIRIW 1160
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 26/180 (14%)
Query: 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC 227
R+ H+A V + SN GN S D+ + +W+ + + +C ++F H V ++A+
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWN---LQNGQCQYKFLGHTKDVLSVAFS 118
Query: 228 PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSG 287
P +++ G +D +++WNV KG C+H++ A H + +S FS S
Sbjct: 119 PDNRQIVSGG---RDNALRVWNV-KGECMHTLSRGA----------HTDWVSCVRFSPSL 164
Query: 288 DGQKLCLWKYPHMTK-W--------GELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338
D + + ++ K W +L+ T+ + ++ SPDG S+ D R W+
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 118/266 (44%), Gaps = 25/266 (9%)
Query: 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWN 141
++ G F + ++ S + L+LW+ + + GH K V + +++ N
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 142 GHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN--EGNLLASGGDDNLVHV 199
I+ SG +D ++ +V+ T AHT V +++S + ++ SGG DNLV V
Sbjct: 122 RQIV-SGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV 259
WD +++ + + + H V ++ P ++ AS +DG ++W++ KG + +
Sbjct: 181 WD---LATGRLVTDLKGHTNYVTSVTVSP-DGSLCAS--SDKDGVARLWDLTKGEALSEM 234
Query: 260 DTKA---QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSR---- 312
A QIC NR+ +++ G ++ + + +HQ S+
Sbjct: 235 AAGAPINQIC-FSPNRYWM-------CAATEKGIRIFDLENKDIIVELAPEHQGSKKIVP 286
Query: 313 -ILELSQSPDGLTVVSAAADETLRFW 337
+ ++ S DG T+ S D +R W
Sbjct: 287 ECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 123 RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182
R LEGH V+ + ++ NG+ S S D S+ +++ + + HT +V + +S
Sbjct: 61 RRLEGHSAFVSDVALSN-NGNFAVSASWDHSLRLWNLQ-NGQCQYKFLGHTKDVLSVAFS 118
Query: 183 NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR--DHRAAVKALAWCP-YQFNVLASGGG 239
+ + SGG DN + VW+ +C+H H V + + P V+ SGG
Sbjct: 119 PDNRQIVSGGRDNALRVWN----VKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGG- 173
Query: 240 TQDGCIKIWNVQKGTCI 256
D +K+W++ G +
Sbjct: 174 -WDNLVKVWDLATGRLV 189
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 33/201 (16%)
Query: 7 LSRLLETDWYSPRRLLGSPTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLE 66
LSR TDW S R SP+ LDAP + + + N++
Sbjct: 146 LSRGAHTDWVSCVRF--SPS----------LDAPVIVSGGWDNLVK-------------- 179
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+W G + LK G ++ TS++ S D A +LWD + + +
Sbjct: 180 --VWDLATGRLVTDLK--GHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA 235
Query: 127 GHDK--RVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVC-GLKWSN 183
++ + +W G + + N D+ V + + C + WS
Sbjct: 236 AGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSA 295
Query: 184 EGNLLASGGDDNLVHVWDHSK 204
+G+ L SG DN++ VW S+
Sbjct: 296 DGSTLYSGYTDNVIRVWGVSE 316
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 305 ELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362
L+ ++ + +++ S +G VSA+ D +LR W F+ H +LS+ SP
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP 119
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 304 GELQHQ----TSRILELSQSPDGLTVVSAAADETLRFWEAFG 341
G+ Q++ T +L ++ SPD +VS D LR W G
Sbjct: 99 GQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG 140
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 128/298 (42%), Gaps = 32/298 (10%)
Query: 58 ILAIALGLELYLWKQENGEV-----QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQ 112
IL+ + + +WK E Q+ L+ G F + + S D + G L+
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 113 LWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH 172
LWD T R GH K V + +++ N I+ SGS+DK+I + T + +H
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWNTLGVCKYTVQDESH 170
Query: 173 TAEVCGLKWS-NEGN-LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ 230
+ V +++S N N ++ S G D LV VW+ +++ K H + + P
Sbjct: 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN---LANCKLKTNHIGHTGYLNTVTVSP-D 226
Query: 231 FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ 290
++ ASGG +DG +W++ +G ++++D I L ++ + + + G S
Sbjct: 227 GSLCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPS------ 278
Query: 291 KLCLWKYPHMTKWGELQHQT---------SRILELSQSPDGLTVVSAAADETLRFWEA 339
+ +W EL+ + + L+ S DG T+ + D +R W+
Sbjct: 279 -IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 19/162 (11%)
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLH-RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI 247
+SG D +++ S M+ L + H V +A P +++ S ++D I +
Sbjct: 8 SSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSA--SRDKTIIM 65
Query: 248 WNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSG--------DGQKLCLWKYPH 299
W + + + + +A R H +S SS G DG L LW
Sbjct: 66 WKLTRDETNYGIPQRAL-------RGHSHFVSDVVISSDGQFALSGSWDG-TLRLWDLTT 117
Query: 300 MTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341
T T +L ++ S D +VS + D+T++ W G
Sbjct: 118 GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG 159
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 128/298 (42%), Gaps = 32/298 (10%)
Query: 58 ILAIALGLELYLWKQENGEV-----QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQ 112
IL+ + + +WK E Q+ L+ G F + + S D + G L+
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 113 LWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH 172
LWD T R GH K V + +++ N I+ SGS+DK+I + T + +H
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWNTLGVCKYTVQDESH 147
Query: 173 TAEVCGLKWS-NEGN-LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ 230
+ V +++S N N ++ S G D LV VW+ +++ K H + + P
Sbjct: 148 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN---LANCKLKTNHIGHTGYLNTVTVSP-D 203
Query: 231 FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ 290
++ ASGG +DG +W++ +G ++++D I L ++ + + + G S
Sbjct: 204 GSLCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPS------ 255
Query: 291 KLCLWKYPHMTKWGELQHQT---------SRILELSQSPDGLTVVSAAADETLRFWEA 339
+ +W EL+ + + L+ S DG T+ + D +R W+
Sbjct: 256 -IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRH 273
+ H V +A P +++ S ++D I +W + + + + +A R
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSA--SRDKTIIMWKLTRDETNYGIPQRAL-------RG 61
Query: 274 HKEILSGHGFSSSG--------DGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTV 325
H +S SS G DG L LW T T +L ++ S D +
Sbjct: 62 HSHFVSDVVISSDGQFALSGSWDG-TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 326 VSAAADETLRFWEAFG 341
VS + D+T++ W G
Sbjct: 121 VSGSRDKTIKLWNTLG 136
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 93 ISWSQDAKTLAVGYMASKLQLWDAETSKL--IRNLEGHDKRVATASWNHWNGHILTSGSQ 150
++ S D + +AVG SK+ ++ + + ++ + H + + ++++ NG L + Q
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSVAFSN-NGAFLVATDQ 511
Query: 151 DKSIINHDVRVSNNV----TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206
+ +I + V+NN T+ HTA+V + WS + LA+G DN V VW+ +K S
Sbjct: 512 SRKVIPY--SVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569
Query: 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV 250
+ + ++V ++ W + ++++G QD IK WNV
Sbjct: 570 DHPIIIKGAHAMSSVNSVIWL-NETTIVSAG---QDSNIKFWNV 609
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 109/259 (42%), Gaps = 28/259 (10%)
Query: 93 ISWSQDAKTLA-VGYMASKLQ---LWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSG 148
ISW ++K +A VG + L+D TS NL G + + + + + SG
Sbjct: 109 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSN--GNLTGQARAMNSVDFKPSRPFRIISG 166
Query: 149 SQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS 208
S D ++ + S HT V ++++ +G+L AS G D + +++ + +
Sbjct: 167 SDDNTVAIFE-GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 225
Query: 209 KCLH----RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ 264
+ H +V L W P + ++ + D IKIWNV ++ +
Sbjct: 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA---SADKTIKIWNVATLKVEKTIPVGTR 282
Query: 265 I----CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSR-ILELSQS 319
I G+ W + +S +GF + + P + ++++ ++ I LS S
Sbjct: 283 IEDQQLGIIWTKQALVSISANGFIN---------FVNPELGSIDQVRYGHNKAITALSSS 333
Query: 320 PDGLTVVSAAADETLRFWE 338
DG T+ SA A+ + W+
Sbjct: 334 ADGKTLFSADAEGHINSWD 352
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 132/316 (41%), Gaps = 48/316 (15%)
Query: 67 LYLWKQENGEVQKLLKV-TGEDDFPTSISWSQDA--KTLAVGYMASKLQLWDAETSKLIR 123
+ +W +V+K + V T +D I W++ A A G+ + + E + +
Sbjct: 263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF----INFVNPELGSIDQ 318
Query: 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI--NAHTAEVCGLKW 181
GH+K + TA + +G L S + I + D+ S +++R+ + H + G+K
Sbjct: 319 VRYGHNKAI-TALSSSADGKTLFSADAEGHINSWDI--STGISNRVFPDVHATMITGIKT 375
Query: 182 SNEGNLLASGGDDNL-VHVWDHSKMSSSKCLHRFRDHRA---AVK-----ALAWCPYQFN 232
+++G+L DD+L V S + SSK + + AV A+A C
Sbjct: 376 TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 435
Query: 233 VLASGGGTQ------DGCIKIWNVQKGTCIHSVDTK--------AQICGLEWNRHHKEIL 278
+ + G T+ C+ + N ++ + D+K A + ++ H EI
Sbjct: 436 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 495
Query: 279 SGHGFSSSG-----DGQKLCLWKYPHMTKWGELQH------QTSRILELSQSPDGLTVVS 327
S FS++G Q + Y + EL H T+++ +S SPD + + +
Sbjct: 496 S-VAFSNNGAFLVATDQSRKVIPYSVANNF-ELAHTNSWTFHTAKVACVSWSPDNVRLAT 553
Query: 328 AAADETLRFWEAFGPS 343
+ D ++ W PS
Sbjct: 554 GSLDNSVIVWNMNKPS 569
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 43/286 (15%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126
+ +W + E +++L TG + + D + + G S +++WD T +++ L
Sbjct: 155 IKIWDKNTLECKRIL--TGHTG--SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLI 210
Query: 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR--INAHTAEVCGLKWSNE 184
H + V +N NG ++T S+D+SI D+ ++T R + H A V + + ++
Sbjct: 211 HHCEAVLHLRFN--NGMMVTC-SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK 267
Query: 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244
+ ASG D + VW+ S + L+ H+ + L Y+ ++ SG + D
Sbjct: 268 YIVSASG--DRTIKVWNTSTCEFVRTLN---GHKRGIACLQ---YRDRLVVSG--SSDNT 317
Query: 245 IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSG------------HGFSSSGDGQKL 292
I++W+++ G C+ ++ ++ +K I+SG L
Sbjct: 318 IRLWDIECGACLRVLEGHEELVRC-IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 376
Query: 293 CLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338
CL L + R+ L D +VS++ D+T+ W+
Sbjct: 377 CL---------RTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 13/158 (8%)
Query: 98 DAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINH 157
D + + G + +++WD T + R L GH V ++ ++ +GS D ++
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE---RVIITGSSDSTVRVW 198
Query: 158 DVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH 217
DV + + I+ H V L+++N ++ + D + VWD + + H
Sbjct: 199 DVNTGEMLNTLIH-HCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255
Query: 218 RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255
RAAV + + ++ V ASG D IK+WN TC
Sbjct: 256 RAAVNVVDF-DDKYIVSASG----DRTIKVWNT--STC 286
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 112/250 (44%), Gaps = 23/250 (9%)
Query: 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIIN-----HDVRVSNNVTS-RINAHTAEVCG 178
LEGH+ V + + + ++L S S+DK++I+ D + V S + ++H + C
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 179 LKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG 238
L + +G S D + +WD +++ + RF H++ V ++ +++
Sbjct: 73 L--TADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVXSVDIDKKASXIIS--- 124
Query: 239 GTQDGCIKIWNVQKGTCIHSV----DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294
G++D IK+W + KG C+ ++ D +Q+ + + + ++ S+G+ + +
Sbjct: 125 GSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKXVKA 180
Query: 295 WKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDG 354
W + S I L+ SPDG + SA D + W + +S D
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN-LAAKKAXYTLSAQDE 239
Query: 355 LLSLKVSPIR 364
+ SL SP R
Sbjct: 240 VFSLAFSPNR 249
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 98/239 (41%), Gaps = 24/239 (10%)
Query: 111 LQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS-------- 162
L+LWD T + + GH V + + I+ SGS+DK+I ++
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVXSVDIDKKASXII-SGSRDKTIKVWTIKGQCLATLLGH 147
Query: 163 NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222
N+ S++ E K ++ + S G+D V W+ ++ + F H + +
Sbjct: 148 NDWVSQVRVVPNE----KADDDSVTIISAGNDKXVKAWNLNQF---QIEADFIGHNSNIN 200
Query: 223 ALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEW--NRHHKEILSG 280
L P ++AS G +DG I +WN+ +++ + ++ L + NR+ +
Sbjct: 201 TLTASP-DGTLIASAG--KDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 281 HGFSS-SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338
G S D Q L P G + + L+ S DG T+ + D +R W+
Sbjct: 258 TGIKVFSLDPQYLVDDLRPEFA--GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Query: 92 SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDK--RVATASWNHWNGHILTSG- 148
+++ S D +A ++ LW+ K L D+ +A + +W +G
Sbjct: 201 TLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGI 260
Query: 149 ---SQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
S D + D+R S+ A L WS +G L +G DN++ VW
Sbjct: 261 KVFSLDPQYLVDDLRPEFAGYSK--AAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 7/153 (4%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
++ E+G+ + L G+ F SI++S D K LA G + + ++D T KL+ LEGH
Sbjct: 148 IFGVESGKKEYSLDTRGK--FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 205
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188
+ + +++ + +L + S D I +DV+ + N+ ++ H + V + + +
Sbjct: 206 AMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHF 263
Query: 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAV 221
S D V VWD + + C+H F DH+ V
Sbjct: 264 VSSSSDKSVKVWD---VGTRTCVHTFFDHQDQV 293
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 126/280 (45%), Gaps = 21/280 (7%)
Query: 87 DDFPTSISWS----QDAKTLAVGYMASKLQLWD--AETSKLIRNLEGHDKRVATASWNHW 140
DD S++W ++++T+ G + +++W E L +LEGH V + +H
Sbjct: 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH- 90
Query: 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
I S S D I D+ + S I+A + L +S + LA+G V+++
Sbjct: 91 TLPIAASSSLDAHIRLWDLENGKQIKS-IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 149
Query: 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD 260
+ S K + + ++A+ P LASG DG I I+++ G +H+++
Sbjct: 150 ---GVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGA--IDGIINIFDIATGKLLHTLE 203
Query: 261 TKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQS 319
A I L ++ + +++ +S DG + ++ H G L S +L ++
Sbjct: 204 GHAMPIRSLTFSPDSQLLVT-----ASDDGY-IKIYDVQHANLAGTLSGHASWVLNVAFC 257
Query: 320 PDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLK 359
PD VS+++D++++ W+ + F H D + +K
Sbjct: 258 PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVK 297
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 97/212 (45%), Gaps = 24/212 (11%)
Query: 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILT 146
D + S+ +S D K LA G +++WD E K++ L+GH++ + + + +G L
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY-FPSGDKLV 181
Query: 147 SGSQDKSIINHDVRVSN-NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205
SGS D+++ D+R ++T I V +G +A+G D V VWD
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA--VSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 206 SSSKCLHRFRD----HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK--------- 252
+ L + H+ +V ++ + +V++ G+ D +K+WN+Q
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS---GSLDRSVKLWNLQNANNKSDSKT 296
Query: 253 ---GTC-IHSVDTKAQICGLEWNRHHKEILSG 280
GTC + + K + + ++ + ILSG
Sbjct: 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 328
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 84/208 (40%), Gaps = 33/208 (15%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-- 126
+W G+ L + ED T D K +A G + +++WD+ET L+ L+
Sbjct: 191 IWDLRTGQCSLTLSI--EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 248
Query: 127 -----GHDKRVATASWNHWNGHILTSGSQDKSII---------NHDVRVSNNVTSRIN-- 170
GH V + + +G + SGS D+S+ D + N+ T +
Sbjct: 249 NESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307
Query: 171 AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC--- 227
H V + + + SG D V WD S L + HR +V ++A
Sbjct: 308 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDK---KSGNPLLMLQGHRNSVISVAVANGS 364
Query: 228 ---PYQFNVLASGGGTQDGCIKIWNVQK 252
P ++NV A+G G D +IW +K
Sbjct: 365 SLGP-EYNVFATGSG--DCKARIWKYKK 389
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 44/205 (21%)
Query: 172 HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAA----------- 220
HT+ VC +K+SN+G LA+G + V+ ++S + R D AA
Sbjct: 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVY---RVSDGSLVARLSDDSAANKDPENLNTSS 118
Query: 221 -------VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ-ICGLEWNR 272
++++ + P LA+G +D I+IW+++ + + Q I L++
Sbjct: 119 SPSSDLYIRSVCFSP-DGKFLATGA--EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 175
Query: 273 HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS---RILELSQSP-DGLTVVSA 328
+++SG SGD + + +W + G+ S + ++ SP DG + +
Sbjct: 176 SGDKLVSG-----SGD-RTVRIWDL----RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG 225
Query: 329 AADETLRFWEAFGPSGSGDFVSHLD 353
+ D +R W+ S +G V LD
Sbjct: 226 SLDRAVRVWD----SETGFLVERLD 246
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 25/172 (14%)
Query: 58 ILAIALGLELYLWKQENGEVQKLLKV-----TGEDDFPTSISWSQDAKTLAVGYMASKLQ 112
I A +L + +W E G + + L TG D S+ +++D +++ G + ++
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281
Query: 113 LWDAETSKLIRNLE------------GHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160
LW+ + + + + GH V + + + +IL SGS+D+ ++ D +
Sbjct: 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SGSKDRGVLFWDKK 340
Query: 161 VSNNVTSRINAHTAEVCGLKWSN------EGNLLASGGDDNLVHVWDHSKMS 206
S N + H V + +N E N+ A+G D +W + K++
Sbjct: 341 -SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA 391
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 29/247 (11%)
Query: 111 LQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN 170
++++D+ K + L GHD V + H G IL SGS D+++ D++ T
Sbjct: 144 IRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWDIK-KGCCTHVFE 200
Query: 171 AHTAEVCGLKWSNEGNL--LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP 228
H + V L N+ + +G DN +HVW K SS D+ P
Sbjct: 201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260
Query: 229 YQFNVL---------ASG------GGTQDGCIKIWNVQKGTCIHSVDTKA-QICGLEWNR 272
Y VL SG G+ D + +W+V + C++ + +I ++
Sbjct: 261 YFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDH 320
Query: 273 HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE 332
K +S + + +W + LQ T+ + L S L VSAAAD
Sbjct: 321 ERKRCIS------ASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFL--VSAAADG 372
Query: 333 TLRFWEA 339
++R W+A
Sbjct: 373 SIRGWDA 379
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/212 (19%), Positives = 85/212 (40%), Gaps = 32/212 (15%)
Query: 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNH 139
LL+++G D ++ ++ L G +++WD + EGH+ V
Sbjct: 155 LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 213
Query: 140 W-NGHILTSGSQDKSI----------------------INHDVRVSNNVTSRINAHTAEV 176
+ N + +GS+D ++ + H + + H A V
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASV 273
Query: 177 CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236
+ S GN++ SG DN + VWD ++ KCL+ H + + + + +++
Sbjct: 274 RTV--SGHGNIVVSGSYDNTLIVWD---VAQXKCLYILSGHTDRIYSTIYDHERKRCISA 328
Query: 237 GGGTQDGCIKIWNVQKGTCIHSVDTKAQICGL 268
+ D I+IW+++ G +++ + GL
Sbjct: 329 ---SXDTTIRIWDLENGELXYTLQGHTALVGL 357
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 184 EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243
E N + +G DD + V+D + K L + H V AL + +L SG + D
Sbjct: 131 EDNYVITGADDKXIRVYDSI---NKKFLLQLSGHDGGVWALKYA--HGGILVSG--STDR 183
Query: 244 CIKIWNVQKGTCIH 257
+++W+++KG C H
Sbjct: 184 TVRVWDIKKGCCTH 197
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 112/251 (44%), Gaps = 23/251 (9%)
Query: 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIIN-----HDVRVSNNVTS-RINAHTAEVC 177
LEGH+ V + + + ++L S S+DK++I+ D + V S + ++H + C
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 178 GLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237
L + +G S D + +WD +++ + RF H++ V ++ +++
Sbjct: 72 TL--TADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVMSVDIDKKASMIIS-- 124
Query: 238 GGTQDGCIKIWNVQKGTCIHSV----DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLC 293
G++D IK+W + KG C+ ++ D +Q+ + + + ++ S+G+ + +
Sbjct: 125 -GSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVK 179
Query: 294 LWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLD 353
W + S I L+ SPDG + SA D + W + +S D
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN-LAAKKAMYTLSAQD 238
Query: 354 GLLSLKVSPIR 364
+ SL SP R
Sbjct: 239 EVFSLAFSPNR 249
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 100/239 (41%), Gaps = 24/239 (10%)
Query: 111 LQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS-------- 162
L+LWD T + + GH V + + ++ SGS+DK+I ++
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGH 147
Query: 163 NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222
N+ S++ E K ++ + S G+D +V W+ ++ + F H + +
Sbjct: 148 NDWVSQVRVVPNE----KADDDSVTIISAGNDKMVKAWNLNQF---QIEADFIGHNSNIN 200
Query: 223 ALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEW--NRHHKEILSG 280
L P ++AS G +DG I +WN+ ++++ + ++ L + NR+ +
Sbjct: 201 TLTASP-DGTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 281 HGFSS-SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338
G S D Q L P G + + L+ S DG T+ + D +R W+
Sbjct: 258 TGIKVFSLDPQYLVDDLRPEFA--GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Query: 92 SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDK--RVATASWNHWNGHILTSG- 148
+++ S D +A ++ LW+ K + L D+ +A + +W +G
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI 260
Query: 149 ---SQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
S D + D+R S+ A L WS +G L +G DN++ VW
Sbjct: 261 KVFSLDPQYLVDDLRPEFAGYSK--AAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 112/251 (44%), Gaps = 23/251 (9%)
Query: 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIIN-----HDVRVSNNVTS-RINAHTAEVC 177
LEGH+ V + + + ++L S S+DK++I+ D + V S + ++H + C
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 178 GLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237
L + +G S D + +WD +++ + RF H++ V ++ +++
Sbjct: 72 TL--TADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVMSVDIDKKASMIIS-- 124
Query: 238 GGTQDGCIKIWNVQKGTCIHSV----DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLC 293
G++D IK+W + KG C+ ++ D +Q+ + + + ++ S+G+ + +
Sbjct: 125 -GSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVK 179
Query: 294 LWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLD 353
W + S I L+ SPDG + SA D + W + +S D
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN-LAAKKAMYTLSAQD 238
Query: 354 GLLSLKVSPIR 364
+ SL SP R
Sbjct: 239 EVFSLAFSPNR 249
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 24/241 (9%)
Query: 111 LQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS-------- 162
L+LWD T + + GH V + + ++ SGS+DK+I ++
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGH 147
Query: 163 NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222
N+ S++ E K ++ + S G+D +V W+ ++ + F H + +
Sbjct: 148 NDWVSQVRVVPNE----KADDDSVTIISAGNDKMVKAWNLNQF---QIEADFIGHNSNIN 200
Query: 223 ALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEW--NRHHKEILSG 280
L P ++AS G +DG I +WN+ ++++ + ++ L + NR+ +
Sbjct: 201 TLTASP-DGTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 281 HGFSS-SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
G S D Q L P G + + L+ S DG T+ + D +R W+
Sbjct: 258 TGIKVFSLDPQYLVDDLRPEFA--GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Query: 340 F 340
Sbjct: 316 M 316
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Query: 92 SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDK--RVATASWNHWNGHILTSG- 148
+++ S D +A ++ LW+ K + L D+ +A + +W +G
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI 260
Query: 149 ---SQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
S D + D+R S+ A L WS +G L +G DN++ VW
Sbjct: 261 KVFSLDPQYLVDDLRPEFAGYSK--AAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 112/251 (44%), Gaps = 23/251 (9%)
Query: 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIIN-----HDVRVSNNVTS-RINAHTAEVC 177
LEGH+ V + + + ++L S S+DK++I+ D + V S + ++H + C
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 178 GLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237
L + +G S D + +WD +++ + RF H++ V ++ +++
Sbjct: 72 TL--TADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVMSVDIDKKASMIIS-- 124
Query: 238 GGTQDGCIKIWNVQKGTCIHSV----DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLC 293
G++D IK+W + KG C+ ++ D +Q+ + + + ++ S+G+ + +
Sbjct: 125 -GSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVK 179
Query: 294 LWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLD 353
W + S I L+ SPDG + SA D + W + +S D
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN-LAAKKAMYTLSAQD 238
Query: 354 GLLSLKVSPIR 364
+ SL SP R
Sbjct: 239 EVFSLAFSPNR 249
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 99/241 (41%), Gaps = 24/241 (9%)
Query: 111 LQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS-------- 162
L+LWD T + + GH V + + ++ SGS+DK+I ++
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGH 147
Query: 163 NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222
N+ S++ E K ++ + S G+D +V W+ ++ + F H + +
Sbjct: 148 NDWVSQVRVVPNE----KADDDSVTIISAGNDKMVKAWNLNQF---QIEADFIGHNSNIN 200
Query: 223 ALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEW--NRHHKEILSG 280
L P ++AS G +DG I +WN+ ++++ + ++ L + NR+ +
Sbjct: 201 TLTASP-DGTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 281 HGFSS-SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
G S D Q L P G + L+ S DG T+ + D +R W+
Sbjct: 258 TGIKVFSLDPQYLVDDLRPEFA--GYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Query: 340 F 340
Sbjct: 316 M 316
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 8/115 (6%)
Query: 92 SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDK--RVATASWNHWNGHILTSG- 148
+++ S D +A ++ LW+ K + L D+ +A + +W +G
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI 260
Query: 149 ---SQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
S D + D+R A L WS +G L +G DN++ VW
Sbjct: 261 KVFSLDPQYLVDDLR--PEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 112/251 (44%), Gaps = 23/251 (9%)
Query: 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIIN-----HDVRVSNNVTS-RINAHTAEVC 177
LEGH+ V + + + ++L S S+DK++I+ D + V S + ++H + C
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 178 GLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237
L + +G S D + +WD +++ + RF H++ V ++ +++
Sbjct: 66 TL--TADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVMSVDIDKKASMIIS-- 118
Query: 238 GGTQDGCIKIWNVQKGTCIHSV----DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLC 293
G++D IK+W + KG C+ ++ D +Q+ + + + ++ S+G+ + +
Sbjct: 119 -GSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVK 173
Query: 294 LWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLD 353
W + S I L+ SPDG + SA D + W + +S D
Sbjct: 174 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN-LAAKKAMYTLSAQD 232
Query: 354 GLLSLKVSPIR 364
+ SL SP R
Sbjct: 233 EVFSLAFSPNR 243
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 24/241 (9%)
Query: 111 LQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS-------- 162
L+LWD T + + GH V + + ++ SGS+DK+I ++
Sbjct: 83 LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGH 141
Query: 163 NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222
N+ S++ E K ++ + S G+D +V W+ ++ + F H + +
Sbjct: 142 NDWVSQVRVVPNE----KADDDSVTIISAGNDKMVKAWNLNQF---QIEADFIGHNSNIN 194
Query: 223 ALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEW--NRHHKEILSG 280
L P ++AS G +DG I +WN+ ++++ + ++ L + NR+ +
Sbjct: 195 TLTASP-DGTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA 251
Query: 281 HGFSS-SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
G S D Q L P G + + L+ S DG T+ + D +R W+
Sbjct: 252 TGIKVFSLDPQYLVDDLRPEFA--GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
Query: 340 F 340
Sbjct: 310 M 310
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Query: 92 SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDK--RVATASWNHWNGHILTSG- 148
+++ S D +A ++ LW+ K + L D+ +A + +W +G
Sbjct: 195 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI 254
Query: 149 ---SQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
S D + D+R S+ A L WS +G L +G DN++ VW
Sbjct: 255 KVFSLDPQYLVDDLRPEFAGYSK--AAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 112/251 (44%), Gaps = 23/251 (9%)
Query: 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIIN-----HDVRVSNNVTS-RINAHTAEVC 177
LEGH+ V + + + ++L S S+DK++I+ D + V S + ++H + C
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 178 GLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237
L + +G S D + +WD +++ + RF H++ V ++ +++
Sbjct: 72 TL--TADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVMSVDIDKKASMIIS-- 124
Query: 238 GGTQDGCIKIWNVQKGTCIHSV----DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLC 293
G++D IK+W + KG C+ ++ D +Q+ + + + ++ S+G+ + +
Sbjct: 125 -GSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVK 179
Query: 294 LWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLD 353
W + S I L+ SPDG + SA D + W + +S D
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN-LAAKKAMYTLSAQD 238
Query: 354 GLLSLKVSPIR 364
+ SL SP R
Sbjct: 239 EVFSLAFSPNR 249
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 24/241 (9%)
Query: 111 LQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS-------- 162
L+LWD T + + GH V + + ++ SGS+DK+I ++
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGH 147
Query: 163 NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222
N+ S++ E K ++ + S G+D +V W+ ++ + F H + +
Sbjct: 148 NDWVSQVRVVPNE----KADDDSVTIISAGNDKMVKAWNLNQF---QIEADFIGHNSNIN 200
Query: 223 ALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEW--NRHHKEILSG 280
L P ++AS G +DG I +WN+ ++++ + ++ L + NR+ +
Sbjct: 201 TLTASP-DGTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 281 HGFSS-SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
G S D Q L P G + + L+ S DG T+ + D +R W+
Sbjct: 258 TGIKVFSLDPQYLVDDLRPEFA--GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Query: 340 F 340
Sbjct: 316 M 316
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Query: 92 SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDK--RVATASWNHWNGHILTSG- 148
+++ S D +A ++ LW+ K + L D+ +A + +W +G
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI 260
Query: 149 ---SQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
S D + D+R S+ A L WS +G L +G DN++ VW
Sbjct: 261 KVFSLDPQYLVDDLRPEFAGYSK--AAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 13/217 (5%)
Query: 123 RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKW- 181
+++ H ++ S+ + + ILT+ S D + DV S + + H A+V L
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTA-SGDGTCALWDVE-SGQLLQSFHGHGADVLCLDLA 205
Query: 182 -SNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240
S GN SGG D VWD M S +C+ F H + V ++ + P + ASG +
Sbjct: 206 PSETGNTFVSGGCDKKAMVWD---MRSGQCVQAFETHESDVNSVRYYP-SGDAFASG--S 259
Query: 241 QDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM 300
D ++++++ + ++ I G LSG + + + +W
Sbjct: 260 DDATCRLYDLRADREVAIYSKESIIFGASSVDFS---LSGRLLFAGYNDYTINVWDVLKG 316
Query: 301 TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
++ L +R+ L SPDG S + D TLR W
Sbjct: 317 SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128
LW E+G++ + G D ++ S+ T G K +WD + + ++ E H
Sbjct: 180 LWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH 239
Query: 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCG---LKWSNEG 185
+ V + + + +G SGS D + +D+R V I + + + G + +S G
Sbjct: 240 ESDVNSVRY-YPSGDAFASGSDDATCRLYDLRADREVA--IYSKESIIFGASSVDFSLSG 296
Query: 186 NLLASGGDDNLVHVWDHSKMSSSKCL----HRFRDHRAAVKALAWC 227
LL +G +D ++VWD K S L +R R + A+C
Sbjct: 297 RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFC 342
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/278 (19%), Positives = 106/278 (38%), Gaps = 19/278 (6%)
Query: 93 ISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK 152
+ W +D + + K+ +WD+ T+ + V ++ I G +K
Sbjct: 70 MDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK 129
Query: 153 -SIINHDVRVSNNVTSR---INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS 208
S+ + N+ ++ + HT + ++N + + D +WD + S
Sbjct: 130 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWD---VESG 186
Query: 209 KCLHRFRDHRAAVKALAWCPYQF-NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICG 267
+ L F H A V L P + N SGG + +W+++ G C+ + +T
Sbjct: 187 QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA--MVWDMRSGQCVQAFETHES--D 242
Query: 268 LEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQ---SPDGLT 324
+ R++ SG F+S D L+ + + + S I S S G
Sbjct: 243 VNSVRYYP---SGDAFASGSDDATCRLYDL-RADREVAIYSKESIIFGASSVDFSLSGRL 298
Query: 325 VVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362
+ + D T+ W+ S H + + +L+VSP
Sbjct: 299 LFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP 336
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 6/163 (3%)
Query: 93 ISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL---EGHDKRVATASWNHWNGHILTSGS 149
++W+ LA ++++W E I EGH + V +W+ ++ ++
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 150 QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSK 209
+ I + + + H EV + W+ GNLLA+ D V VW+ + +
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 210 CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252
C+ H VK + W P Q +LAS + D +K++ ++
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQ-ELLAS--ASYDDTVKLYREEE 181
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 20/231 (8%)
Query: 121 LIRNLEGH-DKRVATASWNHWNGHILTSGSQDKSI----INHDVRVSNNVTSRINAHTAE 175
L+ + H D R +WN G +L S D+ I D + +V S H
Sbjct: 7 LLGRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSE--GHQRT 63
Query: 176 VCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235
V + WS GN LAS D +W ++ +C+ H VK++AW P N+LA
Sbjct: 64 VRKVAWSPCGNYLASASFDATTCIWKKNQ-DDFECVTTLEGHENEVKSVAWAP-SGNLLA 121
Query: 236 SGGGTQDGCIKIWNVQKG---TCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGDGQK 291
+ ++D + +W V + C+ +++ Q + + W+ + + S +S D K
Sbjct: 122 TC--SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS----ASYDDTVK 175
Query: 292 LCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342
L + L+ S + L+ P G + S + D T+R W + P
Sbjct: 176 LYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP 226
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 62/149 (41%), Gaps = 5/149 (3%)
Query: 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWD 115
N + + + +WK+ + + + + G ++ S++W+ LA + +W+
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 116 AETS---KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV-TSRINA 171
+ + + L H + V W H + +L S S D ++ + + V + +
Sbjct: 134 VDEEDEYECVSVLNSHTQDVKHVVW-HPSQELLASASYDDTVKLYREEEDDWVCCATLEG 192
Query: 172 HTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
H + V L + G LAS DD V +W
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Query: 71 KQENGEVQKLLKVTGEDDFPTSISWSQDAKT-LAVGYMASKLQLWDAETSKLIRNL---- 125
+ N V ++L TG + +S + D +T L G LWD T + I
Sbjct: 143 RDGNMPVSRVL--TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200
Query: 126 -EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184
GH V + S N N ++ SGS D ++ D+R+++ + H ++ +K+ +
Sbjct: 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD 260
Query: 185 GNLLASGGDDNLVHVWD 201
G +G DD ++D
Sbjct: 261 GQRFGTGSDDGTCRLFD 277
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 119/278 (42%), Gaps = 47/278 (16%)
Query: 94 SWSQDAKTLAVGYMASKLQLWDAETS-------KLIRNLEGHDKRVATASWNHWNGHILT 146
+++ + +++A G + S +++ + + R L GH ++ + L
Sbjct: 115 AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174
Query: 147 SGSQDKSIINHDV----RVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWD 201
+GS D++ + DV R+S + + HTA+V L ++ N+ SG D V +WD
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD 234
Query: 202 HSKMSSSKCLHRFRDHRAAVKALAWCP--YQFNVLASGGGTQDGCIKIWNVQKGTCIHSV 259
+S+ + + H + ++ + P +F G G+ DG ++++++ G
Sbjct: 235 --LRITSRAVRTYHGHEGDINSVKFFPDGQRF-----GTGSDDGTCRLFDMRTGH----- 282
Query: 260 DTKAQICGLEWNRHHKE--ILSGHGFSSSGDGQKLCLWKYPH-------------MTKWG 304
+ Q+ E +R+ E I++ FS SG +L Y + + G
Sbjct: 283 --QLQVYNREPDRNDNELPIVTSVAFSISG---RLLFAGYSNGDCYVWDTLLAEMVLNLG 337
Query: 305 ELQH-QTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341
LQ+ RI L S DG + + + D+ L+ W G
Sbjct: 338 TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 14/138 (10%)
Query: 123 RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182
R L+GH +V + W I+ S SQD +I + S T I H V ++
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIV-SASQDGRLIVWNALTSQK-THAIKLHCPWVMECAFA 117
Query: 183 NEGNLLASGGDDNLVHVWDHS-------KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235
G +A GG D+ +++ S M S+ L H+ + + P Q L
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVL---TGHKGYASSCQYVPDQETRLI 174
Query: 236 SGGGTQDGCIKIWNVQKG 253
+G G Q C+ +W+V G
Sbjct: 175 TGSGDQT-CV-LWDVTTG 190
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 39/191 (20%)
Query: 169 INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP 228
+ H+ +V L W+ E N + S D + VW+ ++S K H + H V A+ P
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWN--ALTSQK-THAIKLHCPWVMECAFAP 118
Query: 229 YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGH-GFSSS- 286
+V GG C I ++ ++A G N +L+GH G++SS
Sbjct: 119 NGQSVAC--GGLDSAC----------SIFNLSSQADRDG---NMPVSRVLTGHKGYASSC 163
Query: 287 ------------GDGQKLC-LWKYPHMTKWGELQHQ-----TSRILELS-QSPDGLTVVS 327
G G + C LW + + T+ +L LS S + +S
Sbjct: 164 QYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS 223
Query: 328 AAADETLRFWE 338
+ D T+R W+
Sbjct: 224 GSCDTTVRLWD 234
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 52 DWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKL 111
D G + + G +L ++ +E L + TS+++S + L GY
Sbjct: 269 DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV------TSVAFSISGRLLFAGYSNGDC 322
Query: 112 QLWDAETSKLIRNL----EGHDKRVATASWNHWNGHILTSGSQDKSI 154
+WD ++++ NL H+ R++ + +G L +GS DK++
Sbjct: 323 YVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKNL 368
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 15/159 (9%)
Query: 102 LAVGYMASKLQL----WDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSII-- 155
LA G K++L +D T + + H K + + +W + +L +GS D ++
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIW 85
Query: 156 ----NHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS-KC 210
+ D ++ + I H EV G+ WSN+G LA+ D V +W+ + +C
Sbjct: 86 AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC 145
Query: 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249
+ ++H VK + W P + +LAS + D ++IW
Sbjct: 146 ISVLQEHSQDVKHVIWHPSE-ALLAS--SSYDDTVRIWK 181
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 13/168 (7%)
Query: 92 SISWSQDAKTLAVGYMASKLQLWDAETSK-------LIRNLEGHDKRVATASWNHWNGHI 144
S++W LA G S + +W E S L+ +EGH+ V +W++ +G+
Sbjct: 63 SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYY 121
Query: 145 LTSGSQDKSIINHDVRVSN---NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201
L + S+DKS+ + S S + H+ +V + W LLAS D+ V +W
Sbjct: 122 LATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK 181
Query: 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249
+C+ H V + + + V G+ D +++W
Sbjct: 182 DYD-DDWECVAVLNGHEGTVWSSDFDKTE-GVFRLCSGSDDSTVRVWK 227
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 82/207 (39%), Gaps = 31/207 (14%)
Query: 69 LWKQENG-----EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS---- 119
+W +E E+ L + G ++ ++WS D LA + +W+ + S
Sbjct: 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY 143
Query: 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI-INHDVRVSNNVTSRINAHTAEVCG 178
+ I L+ H + V W H + +L S S D ++ I D + +N H G
Sbjct: 144 ECISVLQEHSQDVKHVIW-HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE----G 198
Query: 179 LKWSN-----EGNL-LASGGDDNLVHVW-----DHSKMSSSKCLHRFRD-HRAAVKALAW 226
WS+ EG L SG DD+ V VW D C D H+ V +AW
Sbjct: 199 TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW 258
Query: 227 CPYQFNVLASGGGTQDGCIKIWNVQKG 253
FN L + G DG + ++ G
Sbjct: 259 ---GFNGLIASVGA-DGVLAVYEEVDG 281
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 217 HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKE 276
H+ A++++AW P+ ++LA+G + D + IW ++ S D ++ L H+
Sbjct: 57 HKKAIRSVAWRPHT-SLLAAG--SFDSTVSIWAKEE-----SADRTFEMDLLAIIEGHEN 108
Query: 277 ILSGHGFSSSGDGQKLC-------LWKYPHMTKWGE----LQHQTSRILELSQSPDGLTV 325
+ G +S+ G C +W+ + E LQ + + + P +
Sbjct: 109 EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALL 168
Query: 326 VSAAADETLRFWEAF 340
S++ D+T+R W+ +
Sbjct: 169 ASSSYDDTVRIWKDY 183
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 102 LAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR- 160
+AVG K+QL D ++ L+GH + + SW+ +IL + S D + DVR
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218
Query: 161 --------------VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203
S V S AH +V GL ++++G L + G DN + +W+ S
Sbjct: 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 20/170 (11%)
Query: 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVR------VSNNVTSRINAHTAEVCGLKW 181
H V T W + + TS S DK++ D V N + + H + V
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPV----- 152
Query: 182 SNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241
S + L+A G V + D + S C H + HR + A++W P +LA+ +
Sbjct: 153 STKHCLVAVGTRGPKVQLCD---LKSGSCSHILQGHRQEILAVSWSPRYDYILAT--ASA 207
Query: 242 DGCIKIWNVQKGT-CIHSVDT---KAQICGLEWNRHHKEILSGHGFSSSG 287
D +K+W+V++ + C+ ++D K N H ++G F+S G
Sbjct: 208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG 257
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 18/173 (10%)
Query: 184 EGNLLASGGDDNLVHVWD---HSKMSSSKC---LHRFRD----HRAAVKALAWCPYQFNV 233
EG + SGG D ++ ++D S+ S C RD HR +V+ + W P+ +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 234 LASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGD-GQKL 292
S + D +K+W+ + + + ++ H + + H + G G K+
Sbjct: 115 FTS--SSFDKTLKVWDTNTLQTADVFNFEETV----YSHHMSPVSTKHCLVAVGTRGPKV 168
Query: 293 CLWKYPHMTKWGELQHQTSRILELSQSPD-GLTVVSAAADETLRFWEAFGPSG 344
L + LQ IL +S SP + +A+AD ++ W+ SG
Sbjct: 169 QLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 12/161 (7%)
Query: 92 SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD 151
S+S + D + G + +LWD + GH+ + + NG+ +GS D
Sbjct: 200 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNAFATGSDD 258
Query: 152 KSIINHDVRVSNNVTSRINAHTAEVCGL---KWSNEGNLLASGGDDNLVHVWDHSKMSSS 208
+ D+R + + +H +CG+ +S G LL +G DD +VWD K +
Sbjct: 259 ATCRLFDLRADQELMTY--SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 316
Query: 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249
L D+R + + + +A G+ D +KIWN
Sbjct: 317 GVLAG-HDNRVSCLGVT-----DDGMAVATGSWDSFLKIWN 351
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/294 (18%), Positives = 121/294 (41%), Gaps = 22/294 (7%)
Query: 51 MDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASK 110
M WG ++ L ++ + L ++ K+ + + + +++ +A G + +
Sbjct: 72 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 131
Query: 111 LQLWDAETS----KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166
+++ +T ++ R L GH ++ + N + +SG D + D+ T
Sbjct: 132 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTT 189
Query: 167 SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAW 226
+ HT +V L + + L SG D +WD + C F H + + A+ +
Sbjct: 190 TF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWD---VREGMCRQTFTGHESDINAICF 245
Query: 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGL---EWNRHHKEILSGHGF 283
P N A G+ D ++++++ + + ICG+ +++ + +L+G+
Sbjct: 246 FP---NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-- 300
Query: 284 SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
D +W + G L +R+ L + DG+ V + + D L+ W
Sbjct: 301 ----DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 8/203 (3%)
Query: 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA 219
R+ + H A++ + W + LL S D + +WD + +H +
Sbjct: 53 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK---VHAIPLRSS 109
Query: 220 AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS 279
V A+ P N +A GG D I+N++ T +V ++ G L
Sbjct: 110 WVMTCAYAP-SGNYVACGG--LDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLD 164
Query: 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ +S LW + T ++ LS +PD VS A D + + W+
Sbjct: 165 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Query: 340 FGPSGSGDFVSHLDGLLSLKVSP 362
F H + ++ P
Sbjct: 225 REGMCRQTFTGHESDINAICFFP 247
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 12/161 (7%)
Query: 92 SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD 151
S+S + D + G + +LWD + GH+ + + NG+ +GS D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNAFATGSDD 247
Query: 152 KSIINHDVRVSNNVTSRINAHTAEVCGL---KWSNEGNLLASGGDDNLVHVWDHSKMSSS 208
+ D+R + + +H +CG+ +S G LL +G DD +VWD K +
Sbjct: 248 ATCRLFDLRADQELMTY--SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249
L D+R + + + +A G+ D +KIWN
Sbjct: 306 GVLAG-HDNRVSCLGVT-----DDGMAVATGSWDSFLKIWN 340
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/294 (18%), Positives = 121/294 (41%), Gaps = 22/294 (7%)
Query: 51 MDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASK 110
M WG ++ L ++ + L ++ K+ + + + +++ +A G + +
Sbjct: 61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 111 LQLWDAETS----KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166
+++ +T ++ R L GH ++ + N + +SG D + D+ T
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTT 178
Query: 167 SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAW 226
+ HT +V L + + L SG D +WD + C F H + + A+ +
Sbjct: 179 TF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWD---VREGMCRQTFTGHESDINAICF 234
Query: 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGL---EWNRHHKEILSGHGF 283
P N A G+ D ++++++ + + ICG+ +++ + +L+G+
Sbjct: 235 FP---NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-- 289
Query: 284 SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
D +W + G L +R+ L + DG+ V + + D L+ W
Sbjct: 290 ----DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 8/203 (3%)
Query: 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA 219
R+ + H A++ + W + LL S D + +WD + +H +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---VHAIPLRSS 98
Query: 220 AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS 279
V A+ P N +A GG D I+N++ T +V ++ G L
Sbjct: 99 WVMTCAYAP-SGNYVACGG--LDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ +S LW + T ++ LS +PD VS A D + + W+
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 340 FGPSGSGDFVSHLDGLLSLKVSP 362
F H + ++ P
Sbjct: 214 REGMCRQTFTGHESDINAICFFP 236
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/294 (18%), Positives = 121/294 (41%), Gaps = 22/294 (7%)
Query: 51 MDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASK 110
M WG ++ L ++ + L ++ K+ + + + +++ +A G + +
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 111 LQLWDAETS----KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166
+++ +T ++ R L GH ++ + N + +SG D + D+ T
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTT 178
Query: 167 SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAW 226
+ HT +V L + + L SG D +WD + C F H + + A+ +
Sbjct: 179 TF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWD---VREGMCRQTFTGHESDINAICF 234
Query: 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGL---EWNRHHKEILSGHGF 283
P N A G+ D ++++++ + + ICG+ +++ + +L+G+
Sbjct: 235 FP---NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-- 289
Query: 284 SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
D +W + G L +R+ L + DG+ V + + D L+ W
Sbjct: 290 ----DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 12/161 (7%)
Query: 92 SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD 151
S+S + D + G + +LWD + GH+ + + NG+ +GS D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNAFATGSDD 247
Query: 152 KSIINHDVRVSNNVTSRINAHTAEVCGL---KWSNEGNLLASGGDDNLVHVWDHSKMSSS 208
+ D+R + + +H +CG+ +S G LL +G DD +VWD K +
Sbjct: 248 ATCRLFDLRADQELMTY--SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249
L D+R + + + +A G+ D +KIWN
Sbjct: 306 GVLAG-HDNRVSCLGVT-----DDGMAVATGSWDSFLKIWN 340
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 8/203 (3%)
Query: 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA 219
R+ + H A++ + W + LL S D + +WD + +H +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK---VHAIPLRSS 98
Query: 220 AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS 279
V A+ P N +A GG D I+N++ T +V ++ G L
Sbjct: 99 WVMTCAYAP-SGNYVACGG--LDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ +S LW + T ++ LS +PD VS A D + + W+
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 340 FGPSGSGDFVSHLDGLLSLKVSP 362
F H + ++ P
Sbjct: 214 REGMCRQTFTGHESDINAICFFP 236
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 12/161 (7%)
Query: 92 SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD 151
S+S + D + G + +LWD + GH+ + + NG+ +GS D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNAFATGSDD 247
Query: 152 KSIINHDVRVSNNVTSRINAHTAEVCGL---KWSNEGNLLASGGDDNLVHVWDHSKMSSS 208
+ D+R + + +H +CG+ +S G LL +G DD +VWD K +
Sbjct: 248 ATCRLFDLRADQELMTY--SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249
L D+R + + + +A G+ D +KIWN
Sbjct: 306 GVLAG-HDNRVSCLGVT-----DDGMAVATGSWDSFLKIWN 340
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/294 (18%), Positives = 121/294 (41%), Gaps = 22/294 (7%)
Query: 51 MDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASK 110
M WG ++ L ++ + L ++ K+ + + + +++ +A G + +
Sbjct: 61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 111 LQLWDAETS----KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166
+++ +T ++ R L GH ++ + N + +SG D + D+ T
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTT 178
Query: 167 SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAW 226
+ HT +V L + + L SG D +WD + C F H + + A+ +
Sbjct: 179 TF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWD---VREGMCRQTFTGHESDINAICF 234
Query: 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGL---EWNRHHKEILSGHGF 283
P N A G+ D ++++++ + + ICG+ +++ + +L+G+
Sbjct: 235 FP---NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-- 289
Query: 284 SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
D +W + G L +R+ L + DG+ V + + D L+ W
Sbjct: 290 ----DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 8/203 (3%)
Query: 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA 219
R+ + H A++ + W + LL S D + +WD + +H +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---VHAIPLRSS 98
Query: 220 AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS 279
V A+ P N +A GG D I+N++ T +V ++ G L
Sbjct: 99 WVMTCAYAP-SGNYVACGG--LDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ +S LW + T ++ LS +PD VS A D + + W+
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 340 FGPSGSGDFVSHLDGLLSLKVSP 362
F H + ++ P
Sbjct: 214 REGMCRQTFTGHESDINAICFFP 236
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/294 (18%), Positives = 121/294 (41%), Gaps = 22/294 (7%)
Query: 51 MDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASK 110
M WG ++ L ++ + L ++ K+ + + + +++ +A G + +
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 111 LQLWDAETS----KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166
+++ +T ++ R L GH ++ + N + +SG D + D+ T
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTT 178
Query: 167 SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAW 226
+ HT +V L + + L SG D +WD + C F H + + A+ +
Sbjct: 179 TF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWD---VREGMCRQTFTGHESDINAICF 234
Query: 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGL---EWNRHHKEILSGHGF 283
P N A G+ D ++++++ + + ICG+ +++ + +L+G+
Sbjct: 235 FP---NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-- 289
Query: 284 SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337
D +W + G L +R+ L + DG+ V + + D L+ W
Sbjct: 290 ----DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 12/161 (7%)
Query: 92 SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD 151
S+S + D + G + +LWD + GH+ + + NG+ +GS D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNAFATGSDD 247
Query: 152 KSIINHDVRVSNNVTSRINAHTAEVCGL---KWSNEGNLLASGGDDNLVHVWDHSKMSSS 208
+ D+R + + +H +CG+ +S G LL +G DD +VWD K +
Sbjct: 248 ATCRLFDLRADQELMTY--SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249
L D+R + + + +A G+ D +KIWN
Sbjct: 306 GVLAG-HDNRVSCLGVT-----DDGMAVATGSWDSFLKIWN 340
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 8/203 (3%)
Query: 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA 219
R+ + H A++ + W + LL S D + +WD + +H +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK---VHAIPLRSS 98
Query: 220 AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS 279
V A+ P N +A GG D I+N++ T +V ++ G L
Sbjct: 99 WVMTCAYAP-SGNYVACGG--LDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
+ +S LW + T ++ LS +PD VS A D + + W+
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 340 FGPSGSGDFVSHLDGLLSLKVSP 362
F H + ++ P
Sbjct: 214 REGMCRQTFTGHESDINAICFFP 236
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 105/251 (41%), Gaps = 64/251 (25%)
Query: 67 LYLWK-----QENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121
+ LWK + G Q+ ++TG F + S D + G +L+LWD
Sbjct: 407 IILWKLTKDDKAYGVAQR--RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS 464
Query: 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSI------------INHD----------V 159
R GH K V + +++ N I+ S S+D++I I+ V
Sbjct: 465 TRRFVGHTKDVLSVAFSLDNRQIV-SASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCV 523
Query: 160 RVSNN------------------------VTSRINAHTAEVCGLKWSNEGNLLASGGDDN 195
R S N + S + HT V + S +G+L ASGG D
Sbjct: 524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG 583
Query: 196 LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255
+V +WD ++ K L+ + + + AL + P ++ + A+ T+ G IKIW+++ +
Sbjct: 584 VVLLWD---LAEGKKLYSL-EANSVIHALCFSPNRYWLCAA---TEHG-IKIWDLESKSI 635
Query: 256 IH--SVDTKAQ 264
+ VD KA+
Sbjct: 636 VEDLKVDLKAE 646
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 28/211 (13%)
Query: 141 NGHILTSGSQDKSII----NHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNL 196
N I+ S S+DKSII D + R+ H+ V + S++G SG D
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI 256
+ +WD + S++ RF H V ++A+ ++++ ++D IK+WN G C
Sbjct: 454 LRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNRQIVSA---SRDRTIKLWNTL-GECK 506
Query: 257 HSVDTKAQICGLEWNRHHKEILSGHGFS---------SSGDGQKLCLWKYPHMTKWGELQ 307
+++ E H++ +S FS S+ + + +W + L
Sbjct: 507 YTIS--------EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA 558
Query: 308 HQTSRILELSQSPDGLTVVSAAADETLRFWE 338
T + ++ SPDG S D + W+
Sbjct: 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 12/133 (9%)
Query: 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRH 273
R H V A+A +++ S ++D I +W + K + V + L + H
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSA--SRDKSIILWKLTKDDKAYGVAQRR----LTGHSH 431
Query: 274 HKE--ILSGHG-FSSSG--DGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA 328
E +LS G F+ SG DG+ L LW T +L ++ S D +VSA
Sbjct: 432 FVEDVVLSSDGQFALSGSWDGE-LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 329 AADETLRFWEAFG 341
+ D T++ W G
Sbjct: 491 SRDRTIKLWNTLG 503
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 171 AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ 230
AH +E+ LK+ G L S D + +W S+ + L HRA V +A
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL---IGHRATVTDIAIIDRG 190
Query: 231 FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK 262
NVL++ + DG I++W GT IH+ + K
Sbjct: 191 RNVLSA---SLDGTIRLWECGTGTTIHTFNRK 219
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 171 AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ 230
AH +E+ LK+ G L S D + +W S+ + L HRA V +A
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL---IGHRATVTDIAIIDRG 193
Query: 231 FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK 262
NVL++ + DG I++W GT IH+ + K
Sbjct: 194 RNVLSA---SLDGTIRLWECGTGTTIHTFNRK 222
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 24/204 (11%)
Query: 87 DDFPTSISWSQDAKTLAVGYMASKLQLWD---AETSKLIRNLEGHDKRVATASWNHWNGH 143
D P +S + A S L+LW A++ K I +L+ D + W+H N
Sbjct: 23 DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQV-DSKFNDLDWSH-NNK 80
Query: 144 ILTSGSQDKSIINHDVRVSNNVT---SRINAHTAEVCGLKW-SNEGNLLASGGDDNLVHV 199
I+ + S+ + +NN +R + H++ V +K+ + + N+LASGG++ + +
Sbjct: 81 IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFI 140
Query: 200 WDHSKMSSSKCLH------RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ-K 252
WD +K + S + + V +LAW +V AS G + IW+++ K
Sbjct: 141 WDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS--NFASIWDLKAK 198
Query: 253 GTCIHSVDT------KAQICGLEW 270
IH T K Q+ +EW
Sbjct: 199 KEVIHLSYTSPNSGIKQQLSVVEW 222
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 87/211 (41%), Gaps = 26/211 (12%)
Query: 144 ILTSGSQDKSII---------NHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD 194
+L SGS+DK+++ N + + + H V L S E S D
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKA---LTGHNHFVSDLALSQENCFAISSSWD 97
Query: 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254
+ +WD + + RF H++ V ++A+ P +L++G + IK+WN+
Sbjct: 98 KTLRLWD---LRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAERE---IKLWNILGEC 151
Query: 255 CIHSVDTKAQICGLEWNRHHKEILSGHG-------FSSSGDGQKLCLWKYPHMTKWGELQ 307
S + + + R+ + S + F+S G +L +W ++
Sbjct: 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKA 211
Query: 308 HQTSRILELSQSPDGLTVVSAAADETLRFWE 338
H+ S + LS SP+G + + D+ L W+
Sbjct: 212 HE-SNVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 78/178 (43%), Gaps = 17/178 (9%)
Query: 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG 142
+TG + F + ++ SQ+ L+LWD T + GH V + +++ N
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 143 HILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS----------NEGNLLASGG 192
IL++G++ + + + + ++ H+ V +++S AS G
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 193 DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV 250
D + VW+ ++ + + F+ H + V L+ P +A+GG +D + IW++
Sbjct: 192 WDGRLKVWN----TNFQIRYTFKAHESNVNHLSISP-NGKYIATGG--KDKKLLIWDI 242
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 282 GFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341
SSS D + L LW T + S + ++ SPD ++SA A+ ++ W G
Sbjct: 91 AISSSWD-KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149
Query: 342 PS--GSGDFVSHLDGLLSLKVSPI 363
S + +H D + ++ SPI
Sbjct: 150 ECKFSSAEKENHSDWVSCVRYSPI 173
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 10/151 (6%)
Query: 64 GLELYLWKQENGEVQKLLKVTGEDDFPT-SISW-SQDAKTLAVGYMASKLQLWDAETSKL 121
G L L + G V K + + P I+W + +A G + +W+ L
Sbjct: 57 GAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGL 116
Query: 122 IR-------NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV-TSRINAHT 173
+ LEGH KRV +W+ ++L S D I+ DV V T + H
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 174 AEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204
+ + WS +G L+ + D V V + K
Sbjct: 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 217 HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI 256
H A V +AW P+ NV+AS G++D + +W + G +
Sbjct: 80 HTAPVLDIAWXPHNDNVIAS--GSEDCTVMVWEIPDGGLV 117
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 15/178 (8%)
Query: 78 QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS-KLIRNLEGHDKRVATAS 136
+K++ D+ SI+ + G ++LW+ E + L + EGH+ V +
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL-----LASG 191
+N + SG D+++ V T T + G+ + + L + +
Sbjct: 148 FNPKDPSTFASGCLDRTV---KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204
Query: 192 GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249
DD + +WD+ S C+ H + V + P +++ G++DG +KIWN
Sbjct: 205 SDDLTIKIWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIIIS---GSEDGTLKIWN 256
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 8/232 (3%)
Query: 108 ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167
+ +++LW+ ET +R+++ + V + I+ GS D I + V
Sbjct: 34 SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV-GSDDFRIRVFNYNTGEKVVD 92
Query: 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC 227
AH + + + SG DD V +W+ + + F H V +A+
Sbjct: 93 -FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVAFN 149
Query: 228 PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSG 287
P + ASG D +K+W++ + T ++ T Q G+ + ++ + ++S
Sbjct: 150 PKDPSTFASG--CLDRTVKVWSLGQSTPNFTL-TTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 288 DGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
D + +W Y + L+ S + P ++S + D TL+ W +
Sbjct: 207 D-LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 15/178 (8%)
Query: 78 QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS-KLIRNLEGHDKRVATAS 136
+K++ D+ SI+ + G ++LW+ E + L + EGH+ V +
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL-----LASG 191
+N + SG D+++ V T T + G+ + + L + +
Sbjct: 148 FNPKDPSTFASGCLDRTV---KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204
Query: 192 GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249
DD + +WD+ S C+ H + V + P +++ G++DG +KIWN
Sbjct: 205 SDDLTIKIWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIIIS---GSEDGTLKIWN 256
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 8/232 (3%)
Query: 108 ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167
+ +++LW+ ET +R+++ + V + I+ GS D I + V
Sbjct: 34 SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV-GSDDFRIRVFNYNTGEKVVD 92
Query: 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC 227
AH + + + SG DD V +W+ + + F H V +A+
Sbjct: 93 -FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVAFN 149
Query: 228 PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSG 287
P + ASG D +K+W++ + T ++ T Q G+ + ++ + ++S
Sbjct: 150 PKDPSTFASG--CLDRTVKVWSLGQSTPNFTL-TTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 288 DGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
D + +W Y + L+ S + P ++S + D TL+ W +
Sbjct: 207 D-LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 10/151 (6%)
Query: 64 GLELYLWKQENGEVQKLLKVTGEDDFPT-SISW-SQDAKTLAVGYMASKLQLWDAETSKL 121
G L L + G V K + + P I+W + +A G + +W+ L
Sbjct: 57 GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116
Query: 122 IR-------NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV-TSRINAHT 173
+ LEGH KRV +W+ ++L S D I+ DV V T + H
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 174 AEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204
+ + WS +G L+ + D V V + K
Sbjct: 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 217 HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253
H A V +AWCP+ NV+AS G++D + +W + G
Sbjct: 80 HTAPVLDIAWCPHNDNVIAS--GSEDCTVMVWEIPDG 114
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 15/178 (8%)
Query: 78 QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS-KLIRNLEGHDKRVATAS 136
+K++ D+ SI+ + G ++LW+ E + L + EGH+ V +
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL-----LASG 191
+N + SG D+++ V T T + G+ + + L + +
Sbjct: 148 FNPKDPSTFASGCLDRTV---KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204
Query: 192 GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249
DD + +WD+ S C+ H + V + P +++ G++DG +KIWN
Sbjct: 205 SDDLTIKIWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIIIS---GSEDGTLKIWN 256
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 8/232 (3%)
Query: 108 ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167
+ +++LW+ ET +R+++ + V + I+ GS D I + V
Sbjct: 34 SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV-GSDDFRIRVFNYNTGEKVVD 92
Query: 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC 227
AH + + + SG DD V +W+ ++ F H V +A+
Sbjct: 93 -FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE--NNWALEQTFEGHEHFVMCVAFN 149
Query: 228 PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSG 287
P + ASG D +K+W++ + T ++ T Q G+ + ++ + ++S
Sbjct: 150 PKDPSTFASG--CLDRTVKVWSLGQSTPNFTL-TTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 288 DGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
D + +W Y + L+ S + P ++S + D TL+ W +
Sbjct: 207 D-LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 15/178 (8%)
Query: 78 QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS-KLIRNLEGHDKRVATAS 136
+K++ D+ SI+ + G ++LW+ E + L + EGH+ V +
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL-----LASG 191
+N + SG D+++ V T T + G+ + + L + +
Sbjct: 148 FNPKDPSTFASGCLDRTV---KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204
Query: 192 GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249
DD + +WD+ S C+ H + V + P +++ G++DG +KIWN
Sbjct: 205 SDDLTIKIWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIIIS---GSEDGTLKIWN 256
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 8/232 (3%)
Query: 108 ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167
+ ++++W+ ET +R+++ + V + I+ GS D I + V
Sbjct: 34 SGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV-GSDDFRIRVFNYNTGEKVVD 92
Query: 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC 227
AH + + + SG DD V +W+ ++ F H V +A+
Sbjct: 93 -FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE--NNWALEQTFEGHEHFVMCVAFN 149
Query: 228 PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSG 287
P + ASG D +K+W++ + T ++ T Q G+ + ++ + ++S
Sbjct: 150 PKDPSTFASG--CLDRTVKVWSLGQSTPNFTL-TTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 288 DGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339
D + +W Y + L+ S + P ++S + D TL+ W +
Sbjct: 207 D-LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 107/268 (39%), Gaps = 30/268 (11%)
Query: 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWD--AETSKLIRNLEGHDKRVATASWN 138
L D++ S D TL VG AS L +WD A T ++ L + +
Sbjct: 91 LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS 150
Query: 139 HWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVH 198
+ + S D +I D+ + + + HT + SN+G L +GG DN V
Sbjct: 151 P-DSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208
Query: 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHS 258
WD + + L + D + + +L +CP LA G + + +++ +V K
Sbjct: 209 SWD---LREGRQLQQ-HDFTSQIFSLGYCPTG-EWLAVGMESSN--VEVLHVNK------ 255
Query: 259 VDTKAQICGLEWNRHHKEILS------GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSR 312
K Q+ + H +LS G F S+G L W+ P+ + ++S
Sbjct: 256 -PDKYQL-----HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSS 308
Query: 313 ILELSQSPDGLTVVSAAADETLRFWEAF 340
+L S D +V+ + D+ +E
Sbjct: 309 VLSCDISVDDKYIVTGSGDKKATVYEVI 336
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 2/121 (1%)
Query: 243 GCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY--PHM 300
GC+K+W++ V + + R K + G G+ L +W P
Sbjct: 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131
Query: 301 TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKV 360
EL L+ SPD S +D + W+ + F H DG + +
Sbjct: 132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 191
Query: 361 S 361
S
Sbjct: 192 S 192
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 95/253 (37%), Gaps = 27/253 (10%)
Query: 75 GEVQKLL-KVTGEDDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSKL--IRNLEGHD 129
GE KL+ +TG + + W+ LA K+ +W E + I H
Sbjct: 40 GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS 99
Query: 130 KRVATASW-NHWNGHILTSGSQDKSIINHDVRVSNNVTSRI--NAHTAEVCGLKW----- 181
V + W H G +L S D + + + N TS I +AH V W
Sbjct: 100 ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK-ENGTTSPIIIDAHAIGVNSASWAPATI 158
Query: 182 --------SNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR-FRDHRAAVKALAWCPYQFN 232
+ E +GG DNLV +W ++ + + L H V+ +AW P
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218
Query: 233 VLASGGGTQDGCIKIW--NVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ 290
+QD IW + ++G ++ + + + W LSG+ + SG
Sbjct: 219 RSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS--LSGNVLALSGGDN 276
Query: 291 KLCLWKYPHMTKW 303
K+ LWK KW
Sbjct: 277 KVTLWKENLEGKW 289
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 183 NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242
++G SGG D V VWD +S L + H + V +A CP + + S G +D
Sbjct: 149 SDGTQAVSGGKDFSVKVWD---LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG--ED 203
Query: 243 GCIKIWNVQK 252
G I +W+ +K
Sbjct: 204 GRILLWDTRK 213
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 3/117 (2%)
Query: 67 LYLWKQENGEVQKLLKVTGEDDFPTSISW-SQDAKTLAVGYMASKLQLWDAETSKLIRNL 125
+ LW + + D PTS++W + T A G + L + + +
Sbjct: 206 ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS 265
Query: 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182
H + + ++++ + L S S+D ++ D S R +H V G+ WS
Sbjct: 266 AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE--VFRDLSHRDFVTGVAWS 320
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 68/164 (41%), Gaps = 27/164 (16%)
Query: 110 KLQLWDAETSKLIRNLE--GHDKRVATASWN-HWNGHILTSGSQDKSI--INHDVRVSNN 164
K+ +W E ++ E GHD V + W H G IL GS D +I + +
Sbjct: 82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE 141
Query: 165 VTSRINAHTAEVCGLKWSN---EGNLL--------------ASGGDDNLVHVWDHSKMSS 207
V NAHT + W+ G+L+ ASGG DNL+ +W +
Sbjct: 142 VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ 201
Query: 208 SKCLHRFRDHRAAVKALAWCP---YQFNVLASGGGTQDGCIKIW 248
K + H V+ +AW P + +AS +QDG + IW
Sbjct: 202 WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS--CSQDGRVFIW 243
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 9/133 (6%)
Query: 100 KTLAVGYMASKLQLWDAETS---KLIRNLEGHDKRVATASWNHWNG---HILTSGSQDKS 153
K A G + ++LW E K + LE H V +W G + S SQD
Sbjct: 180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239
Query: 154 II--NHDVRVSNNVTSRI-NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210
+ D SN + ++ + V + WS N+LA G DN V +W S C
Sbjct: 240 VFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVC 299
Query: 211 LHRFRDHRAAVKA 223
+ + +V A
Sbjct: 300 ISDVNKGQGSVSA 312
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 95/253 (37%), Gaps = 27/253 (10%)
Query: 75 GEVQKLL-KVTGEDDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSKL--IRNLEGHD 129
GE KL+ +TG + + W+ LA K+ +W E + I H
Sbjct: 40 GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS 99
Query: 130 KRVATASW-NHWNGHILTSGSQDKSIINHDVRVSNNVTSRI--NAHTAEVCGLKW----- 181
V + W H G +L S D + + + N TS I +AH V W
Sbjct: 100 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK-ENGTTSPIIIDAHAIGVNSASWAPATI 158
Query: 182 --------SNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR-FRDHRAAVKALAWCPYQFN 232
+ E +GG DNLV +W ++ + + L H V+ +AW P
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218
Query: 233 VLASGGGTQDGCIKIW--NVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ 290
+QD IW + ++G ++ + + + W LSG+ + SG
Sbjct: 219 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS--LSGNVLALSGGDN 276
Query: 291 KLCLWKYPHMTKW 303
K+ LWK KW
Sbjct: 277 KVTLWKENLEGKW 289
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 95/253 (37%), Gaps = 27/253 (10%)
Query: 75 GEVQKLL-KVTGEDDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSK--LIRNLEGHD 129
GE KL+ +TG + + W+ LA K+ +W E + I H
Sbjct: 42 GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS 101
Query: 130 KRVATASWN-HWNGHILTSGSQDKSIINHDVRVSNNVTSRI--NAHTAEVCGLKW----- 181
V + W H G +L S D + + + N TS I +AH V W
Sbjct: 102 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK-ENGTTSPIIIDAHAIGVNSASWAPATI 160
Query: 182 --------SNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR-FRDHRAAVKALAWCPYQFN 232
+ E +GG DNLV +W ++ + + L H V+ +AW P
Sbjct: 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 220
Query: 233 VLASGGGTQDGCIKIW--NVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ 290
+QD IW + ++G ++ + + + W LSG+ + SG
Sbjct: 221 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS--LSGNVLALSGGDN 278
Query: 291 KLCLWKYPHMTKW 303
K+ LWK KW
Sbjct: 279 KVTLWKENLEGKW 291
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 95/253 (37%), Gaps = 27/253 (10%)
Query: 75 GEVQKLL-KVTGEDDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSK--LIRNLEGHD 129
GE KL+ +TG + + W+ LA K+ +W E + I H
Sbjct: 40 GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS 99
Query: 130 KRVATASWN-HWNGHILTSGSQDKSIINHDVRVSNNVTSRI--NAHTAEVCGLKW----- 181
V + W H G +L S D + + + N TS I +AH V W
Sbjct: 100 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK-ENGTTSPIIIDAHAIGVNSASWAPATI 158
Query: 182 --------SNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR-FRDHRAAVKALAWCPYQFN 232
+ E +GG DNLV +W ++ + + L H V+ +AW P
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218
Query: 233 VLASGGGTQDGCIKIW--NVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ 290
+QD IW + ++G ++ + + + W LSG+ + SG
Sbjct: 219 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS--LSGNVLALSGGDN 276
Query: 291 KLCLWKYPHMTKW 303
K+ LWK KW
Sbjct: 277 KVTLWKENLEGKW 289
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 94/253 (37%), Gaps = 27/253 (10%)
Query: 75 GEVQKLL-KVTGEDDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSKL--IRNLEGHD 129
GE KL+ +TG + + W+ LA K+ +W E + I H
Sbjct: 40 GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHS 99
Query: 130 KRVATASW-NHWNGHILTSGSQDKSIINHDVRVSNNVTSRI--NAHTAEVCGLKW----- 181
V + W H G L S D + + + N TS I +AH V W
Sbjct: 100 ASVNSVQWAPHEYGPXLLVASSDGKVSVVEFK-ENGTTSPIIIDAHAIGVNSASWAPATI 158
Query: 182 --------SNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR-FRDHRAAVKALAWCPYQFN 232
+ E +GG DNLV +W ++ + + L H V+ +AW P
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218
Query: 233 VLASGGGTQDGCIKIW--NVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ 290
+QD IW + ++G ++ + + + W LSG+ + SG
Sbjct: 219 RSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS--LSGNVLALSGGDN 276
Query: 291 KLCLWKYPHMTKW 303
K+ LWK KW
Sbjct: 277 KVTLWKENLEGKW 289
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 28/200 (14%)
Query: 173 TAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232
T +V L WS++GN + +G ++ + +W+ + L+ HRA + ++ W +
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKT----GALLNVLNFHRAPIVSVKWNKDGTH 163
Query: 233 VLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG---------- 282
+++ + +WNV GT + + K + G N + SG G
Sbjct: 164 IISM---DVENVTILWNVISGTVMQHFELK-ETGGSSINAENH---SGDGSLGVDVEWVD 216
Query: 283 ---FSSSGDGQKLCLWKYPHMTKWGEL--QHQTSRILELSQSPDGLTVVSAAADETLRFW 337
F G + +++ T G+L H +LE + + L +SA+ D TLR W
Sbjct: 217 DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL--LSASDDGTLRIW 274
Query: 338 EAFGPSGSGDFVSHLDGLLS 357
+ F H ++S
Sbjct: 275 HGGNGNSQNCFYGHSQSIVS 294
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 166 TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALA 225
T ++ H + L++++ LL S DD + +W +S C F H ++ + +
Sbjct: 240 TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC---FYGHSQSIVSAS 296
Query: 226 WCPYQFNVLASGGGTQDGCIKIWNVQKGTCI 256
W + S DG +++W++++ T +
Sbjct: 297 WVGDDKVISCS----MDGSVRLWSLKQNTLL 323
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 15/147 (10%)
Query: 61 IALGLE----LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA 116
+A+GLE + ++K + EV LK T P+ IS S +A G + K+ L+D
Sbjct: 459 VAVGLEEGNTIQVFKLSDLEVSFDLK-TPLRAKPSYISISPSETYIAAGDVXGKILLYDL 517
Query: 117 ETSKLIRNL-EGHDKRVATASWN---------HWNGHILTSGSQDKSIINHDVRVSNNVT 166
++ ++ + ++ SW ++ +GS D +I + V+ +
Sbjct: 518 QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPXKII 577
Query: 167 SRINAHTAEVCGLKWSNEGNLLASGGD 193
+NAH V L W L++SG D
Sbjct: 578 KALNAHKDGVNNLLWETPSTLVSSGAD 604
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 15/147 (10%)
Query: 61 IALGLE----LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA 116
+A+GLE + ++K + EV LK T P+ IS S +A G + K+ L+D
Sbjct: 459 VAVGLEEGNTIQVFKLSDLEVSFDLK-TPLRAKPSYISISPSETYIAAGDVMGKILLYDL 517
Query: 117 ETSKLIRNL-EGHDKRVATASWN---------HWNGHILTSGSQDKSIINHDVRVSNNVT 166
++ ++ + ++ SW ++ +GS D +I + V+ +
Sbjct: 518 QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII 577
Query: 167 SRINAHTAEVCGLKWSNEGNLLASGGD 193
+NAH V L W L++SG D
Sbjct: 578 KALNAHKDGVNNLLWETPSTLVSSGAD 604
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 147 SGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206
S +++K+ + +++V + S + H EV + W+ G +L+S GDD V +W + +
Sbjct: 280 SNTEEKAELQSNLQV--ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 337
Query: 207 SSKCL 211
KC+
Sbjct: 338 EFKCM 342
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 147 SGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206
S +++K+ + +++V + S + H EV + W+ G +L+S GDD V +W + +
Sbjct: 282 SNTEEKAELQSNLQV--ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339
Query: 207 SSKCL 211
KC+
Sbjct: 340 EFKCM 344
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 23/126 (18%)
Query: 181 WSNEGN----LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236
W+ + N LLA G ++ + + M +C+ + H A+ L + P N+L S
Sbjct: 113 WTYDSNTSHPLLAVAGSRGIIRIINPITM---QCIKHYVGHGNAINELKFHPRDPNLLLS 169
Query: 237 GGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS------GHGFSSSGDGQ 290
++D +++WN+Q T + A G+E H E+LS G S G
Sbjct: 170 V--SKDHALRLWNIQTDTLV------AIFGGVE--GHRDEVLSADYDLLGEKIMSCGMDH 219
Query: 291 KLCLWK 296
L LW+
Sbjct: 220 SLKLWR 225
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 23/126 (18%)
Query: 181 WSNEGN----LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236
W+ + N LLA G ++ + + M +C+ + H A+ L + P N+L S
Sbjct: 72 WTYDSNTSHPLLAVAGSRGIIRIINPITM---QCIKHYVGHGNAINELKFHPRDPNLLLS 128
Query: 237 GGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS------GHGFSSSGDGQ 290
++D +++WN+Q T + A G+E H E+LS G S G
Sbjct: 129 V--SKDHALRLWNIQTDTLV------AIFGGVE--GHRDEVLSADYDLLGEKIMSCGMDH 178
Query: 291 KLCLWK 296
L LW+
Sbjct: 179 SLKLWR 184
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 23/126 (18%)
Query: 181 WSNEGN----LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236
W+ + N LLA G ++ + + M +C+ + H A+ L + P N+L S
Sbjct: 77 WTYDSNTSHPLLAVAGSRGIIRIINPITM---QCIKHYVGHGNAINELKFHPRDPNLLLS 133
Query: 237 GGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS------GHGFSSSGDGQ 290
++D +++WN+Q T + A G+E H E+LS G S G
Sbjct: 134 V--SKDHALRLWNIQTDTLV------AIFGGVE--GHRDEVLSADYDLLGEKIMSCGMDH 183
Query: 291 KLCLWK 296
L LW+
Sbjct: 184 SLKLWR 189
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 23/126 (18%)
Query: 181 WSNEGN----LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236
W+ + N LLA G ++ + + M +C+ + H A+ L + P N+L S
Sbjct: 76 WTYDSNTSHPLLAVAGSRGIIRIINPITM---QCIKHYVGHGNAINELKFHPRDPNLLLS 132
Query: 237 GGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS------GHGFSSSGDGQ 290
++D +++WN+Q T + A G+E H E+LS G S G
Sbjct: 133 V--SKDHALRLWNIQTDTLV------AIFGGVE--GHRDEVLSADYDLLGEKIMSCGMDH 182
Query: 291 KLCLWK 296
L LW+
Sbjct: 183 SLKLWR 188
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 23/126 (18%)
Query: 181 WSNEGN----LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236
W+ + N LLA G ++ + + M +C+ + H A+ L + P N+L S
Sbjct: 76 WTYDSNTSHPLLAVAGSRGIIRIINPITM---QCIKHYVGHGNAINELKFHPRDPNLLLS 132
Query: 237 GGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS------GHGFSSSGDGQ 290
++D +++WN+Q T + A G+E H E+LS G S G
Sbjct: 133 V--SKDHALRLWNIQTDTLV------AIFGGVE--GHRDEVLSADYDLLGEKIMSCGMDH 182
Query: 291 KLCLWK 296
L LW+
Sbjct: 183 SLKLWR 188
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 218 RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEI 277
R + + P Q +V+A+GG QDG + IW+V++GT S+ KA + W H
Sbjct: 236 RVPLHCVDRHPNQQHVVATGG--QDGMLSIWDVRQGTMPVSL-LKAHEAEM-WEVHFHPS 291
Query: 278 LSGHGFSSSGDGQKLCLWKYPHMTKWGE---LQHQTSR 312
H F+ S DG LW + T E L HQ R
Sbjct: 292 NPEHLFTCSEDGS---LWHWDASTDVPEKSSLFHQGGR 326
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI 169
++ L+ A+ + +R ++ D A ILT S + I D R N S+I
Sbjct: 171 RINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKI-WDFRQQGNEPSQI 229
Query: 170 NAHTAEV----CGLKWSNEGNLLASGGDDNLVHVWD 201
+ T + C + N+ +++A+GG D ++ +WD
Sbjct: 230 LSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWD 265
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 147 SGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206
S +++K+ + +++V + S + H EV + W+ G +L+S GDD V +W + +
Sbjct: 282 SNTEEKAELQSNLQV--ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339
Query: 207 SSKC 210
KC
Sbjct: 340 EFKC 343
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 9/188 (4%)
Query: 54 GRNNILAIALGLELYLWKQENGE---VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASK 110
G IL + + LW+ + E V K K DD +++S G
Sbjct: 92 GERGILVASDSGAVELWELDENETLIVSKFCKYE-HDDIVSTVSVLSSGTQAVSGSKDIC 150
Query: 111 LQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS-RI 169
+++WD ++ + H +V + + + S S+D I+ D R +
Sbjct: 151 IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC 210
Query: 170 NAHTAEVCGLKWSNEGNLLASGGDDN-LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP 228
+A L W + + + GD+N V + D S+ C+ H V L + P
Sbjct: 211 SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD---TKSTSCVLSSAVHSQCVTGLVFSP 267
Query: 229 YQFNVLAS 236
+ LAS
Sbjct: 268 HSVPFLAS 275
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTL-----AVGYMAS-----KLQLWD 115
E++++ ENG V L+ +S SQ L +V ++AS L + D
Sbjct: 228 EVFVFGDENGTV-SLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD 286
Query: 116 AETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159
+ S+L R+ + H V A+W+ N +LT+ D +++H V
Sbjct: 287 SSLSELFRS-QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 25/131 (19%)
Query: 174 AEVCGLKWSNEGNLLASGGDDNLVHVWD----HSKMSSSKCLHRFRDHRAAVKALAWCPY 229
A V L W E +L + D V +W+ + + S C + D + V
Sbjct: 83 AGVADLTWVGERGILVAS-DSGAVELWELDENETLIVSKFCKYEHDDIVSTV-------- 133
Query: 230 QFNVLASG----GGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFS 284
+VL+SG G++D CIK+W++ + + S AQ+ + + H + F
Sbjct: 134 --SVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV-----FL 186
Query: 285 SSGDGQKLCLW 295
S + ++ LW
Sbjct: 187 SCSEDNRILLW 197
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 8/132 (6%)
Query: 110 KLQLWDAETSKLIRNL--EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167
++ LWD K + + +W+ + G ++ ++ D + ++ V S
Sbjct: 193 RILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS 252
Query: 168 RINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAW 226
H+ V GL +S LAS +D + V D SS L R + HR V+ W
Sbjct: 253 S-AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD----SSLSELFRSQAHRDFVRDATW 307
Query: 227 CPYQFNVLASGG 238
P ++L + G
Sbjct: 308 SPLNHSLLTTVG 319
>pdb|1VHE|A Chain A, Crystal Structure Of A Aminopeptidase/glucanase Homolog
Length = 373
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 197 VHVWDHSKMSSSKCLHR-FRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245
+ V+D S +S H+ RD A A PYQF+ +A GGGT G I
Sbjct: 264 IIVYDASXVS-----HKGLRDAVVATAEEAGIPYQFDAIA-GGGTDSGAI 307
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 156 NHDVRVSNNVTSR------INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSK 209
NH+V + ++ + H +V G+ W+ + N + + G D +VW +
Sbjct: 29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 88
Query: 210 CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241
L R +RAA + + W P + A G G++
Sbjct: 89 TLVILRINRAA-RCVRWAPNE-KKFAVGSGSR 118
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 156 NHDVRVSNNVTSR------INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSK 209
NH+V + ++ + H +V G+ W+ + N + + G D +VW +
Sbjct: 29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 88
Query: 210 CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241
L R +RAA + + W P + A G G++
Sbjct: 89 TLVILRINRAA-RCVRWAPNE-KKFAVGSGSR 118
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 142 GHILTSGSQDKSIINHDVRVSNNVTSRIN-AHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200
G+ L +GS + +V+ S + HT V + WS++G+ + + D +W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ 251
D +SS++ + + H A VK + W N G+ D +K W+ +
Sbjct: 114 D---LSSNQAI-QIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTR 159
>pdb|4EKJ|A Chain A, Crystal Structure Of A Monomeric Beta-xylosidase From
Caulobacter Crescentus Cb15
Length = 500
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 43 RNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGE 86
RND YS +D G L + L ++ E++K LKV+GE
Sbjct: 436 RNDAYSAYIDMGSPTTLTESQLQSLQALTEDRPEIEKALKVSGE 479
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKAL-AW 226
++ H + +K++ EG+LL S D+ VW + + L H + ++
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVW---YSLNGERLGTLDGHTGTIWSIDVD 83
Query: 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCI 256
C ++ V G+ D IK+W+V G C+
Sbjct: 84 CFTKYCVT----GSADYSIKLWDVSNGQCV 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,122,275
Number of Sequences: 62578
Number of extensions: 501977
Number of successful extensions: 2198
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1245
Number of HSP's gapped (non-prelim): 392
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)