Query 040533
Match_columns 364
No_of_seqs 775 out of 1893
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 09:22:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3E-53 6.5E-58 334.5 28.0 301 48-363 118-462 (480)
2 KOG0305 Anaphase promoting com 100.0 3.7E-51 7.9E-56 344.3 31.2 313 23-347 155-468 (484)
3 KOG0272 U4/U6 small nuclear ri 100.0 3.7E-49 8E-54 314.9 22.5 266 85-363 173-441 (459)
4 KOG0271 Notchless-like WD40 re 100.0 1.3E-48 2.9E-53 308.2 23.5 274 82-363 110-420 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-48 2.4E-53 312.2 22.6 276 47-338 177-458 (459)
6 KOG0286 G-protein beta subunit 100.0 1.8E-45 3.8E-50 280.9 30.9 287 31-338 45-343 (343)
7 KOG0279 G protein beta subunit 100.0 3.2E-45 7E-50 277.7 30.1 273 55-341 28-314 (315)
8 KOG0315 G-protein beta subunit 100.0 8E-43 1.7E-47 260.6 28.4 287 58-361 13-309 (311)
9 KOG0286 G-protein beta subunit 100.0 1.8E-42 4E-47 264.4 30.9 270 81-363 49-326 (343)
10 KOG0273 Beta-transducin family 100.0 1.6E-41 3.6E-46 274.8 28.6 304 48-362 181-503 (524)
11 KOG0273 Beta-transducin family 100.0 4.5E-40 9.7E-45 266.5 30.4 277 46-340 236-523 (524)
12 KOG0295 WD40 repeat-containing 100.0 1.2E-40 2.6E-45 261.6 25.4 305 17-339 83-405 (406)
13 KOG0263 Transcription initiati 100.0 8.4E-41 1.8E-45 286.9 26.2 245 85-343 376-652 (707)
14 KOG0284 Polyadenylation factor 100.0 5.6E-42 1.2E-46 272.8 17.3 283 43-341 94-381 (464)
15 KOG0284 Polyadenylation factor 100.0 6.4E-42 1.4E-46 272.5 16.8 262 87-363 96-361 (464)
16 KOG0296 Angio-associated migra 100.0 1E-39 2.2E-44 256.5 28.4 283 42-340 63-398 (399)
17 KOG0295 WD40 repeat-containing 100.0 6.4E-41 1.4E-45 263.1 20.2 276 80-362 101-386 (406)
18 KOG0279 G protein beta subunit 100.0 3.9E-39 8.4E-44 244.7 28.8 269 79-363 7-294 (315)
19 KOG0318 WD40 repeat stress pro 100.0 1.4E-38 3E-43 261.3 33.0 303 47-361 149-582 (603)
20 KOG0291 WD40-repeat-containing 100.0 1E-38 2.2E-43 272.6 31.6 288 47-349 309-621 (893)
21 KOG0316 Conserved WD40 repeat- 100.0 4E-39 8.7E-44 239.0 23.6 269 80-363 10-281 (307)
22 KOG0645 WD40 repeat protein [G 100.0 5.7E-38 1.2E-42 237.4 30.2 279 47-340 16-311 (312)
23 KOG0266 WD40 repeat-containing 100.0 1.9E-38 4.2E-43 278.3 29.8 265 86-363 158-433 (456)
24 KOG0315 G-protein beta subunit 100.0 4.5E-38 9.7E-43 235.2 27.1 262 47-319 42-309 (311)
25 KOG0285 Pleiotropic regulator 100.0 1.3E-38 2.9E-43 249.8 24.5 263 83-361 147-418 (460)
26 KOG0291 WD40-repeat-containing 100.0 3.2E-37 7E-42 263.4 35.0 295 56-363 202-531 (893)
27 KOG0265 U5 snRNP-specific prot 100.0 1E-37 2.2E-42 239.4 27.6 283 39-338 43-336 (338)
28 cd00200 WD40 WD40 domain, foun 100.0 6.3E-37 1.4E-41 256.3 34.1 276 47-338 11-289 (289)
29 KOG0265 U5 snRNP-specific prot 100.0 4.7E-38 1E-42 241.2 24.2 271 78-363 38-319 (338)
30 KOG0285 Pleiotropic regulator 100.0 6.9E-38 1.5E-42 245.8 25.4 277 47-341 153-440 (460)
31 KOG0266 WD40 repeat-containing 100.0 1.2E-37 2.5E-42 273.5 29.9 281 48-340 162-454 (456)
32 KOG0276 Vesicle coat complex C 100.0 3.7E-38 8E-43 263.9 24.9 267 84-362 10-279 (794)
33 KOG0263 Transcription initiati 100.0 3.5E-38 7.5E-43 270.9 23.9 239 48-300 381-651 (707)
34 KOG0319 WD40-repeat-containing 100.0 9E-38 2E-42 266.1 25.7 307 45-361 62-556 (775)
35 cd00200 WD40 WD40 domain, foun 100.0 1.9E-36 4.2E-41 253.3 32.5 268 82-363 4-272 (289)
36 KOG0296 Angio-associated migra 100.0 5.6E-37 1.2E-41 241.2 26.8 274 80-363 57-379 (399)
37 KOG0319 WD40-repeat-containing 100.0 6.9E-37 1.5E-41 260.8 29.5 295 56-363 294-600 (775)
38 KOG0645 WD40 repeat protein [G 100.0 5E-36 1.1E-40 226.9 30.5 270 78-363 5-291 (312)
39 KOG0293 WD40 repeat-containing 100.0 2.9E-37 6.2E-42 246.6 21.6 267 83-363 220-493 (519)
40 KOG0277 Peroxisomal targeting 100.0 1.5E-36 3.2E-41 227.8 23.1 265 63-339 36-308 (311)
41 KOG0278 Serine/threonine kinas 100.0 8.5E-38 1.8E-42 234.0 16.5 280 48-345 17-302 (334)
42 KOG0282 mRNA splicing factor [ 100.0 4.7E-37 1E-41 249.9 21.8 276 48-338 217-503 (503)
43 KOG0281 Beta-TrCP (transducin 100.0 4.3E-38 9.2E-43 246.3 14.7 271 48-345 200-482 (499)
44 KOG0282 mRNA splicing factor [ 100.0 8.3E-38 1.8E-42 254.2 16.4 269 80-363 207-485 (503)
45 KOG0281 Beta-TrCP (transducin 100.0 1.3E-37 2.7E-42 243.7 15.1 254 86-362 196-459 (499)
46 KOG0276 Vesicle coat complex C 100.0 6.3E-36 1.4E-40 250.6 25.9 276 47-336 15-295 (794)
47 KOG0318 WD40 repeat stress pro 100.0 1.4E-34 3E-39 237.9 33.0 299 48-361 62-372 (603)
48 KOG0293 WD40 repeat-containing 100.0 5.3E-36 1.1E-40 239.3 22.9 301 24-342 207-515 (519)
49 PLN00181 protein SPA1-RELATED; 100.0 2.3E-34 5.1E-39 270.8 37.9 280 45-339 483-792 (793)
50 PLN00181 protein SPA1-RELATED; 100.0 2.7E-34 5.9E-39 270.3 36.6 285 64-363 457-774 (793)
51 KOG0313 Microtubule binding pr 100.0 4.8E-35 1E-39 231.4 25.6 265 85-362 103-399 (423)
52 KOG1407 WD40 repeat protein [F 100.0 4.6E-35 9.9E-40 220.6 22.9 268 81-364 14-284 (313)
53 KOG1446 Histone H3 (Lys4) meth 100.0 7.4E-34 1.6E-38 220.0 29.9 264 85-364 12-287 (311)
54 KOG0278 Serine/threonine kinas 100.0 4.9E-36 1.1E-40 224.6 15.6 267 81-363 8-278 (334)
55 KOG0292 Vesicle coat complex C 100.0 5.5E-35 1.2E-39 253.9 23.9 265 85-363 7-303 (1202)
56 KOG0316 Conserved WD40 repeat- 100.0 2.7E-34 5.8E-39 213.4 23.3 271 48-338 20-297 (307)
57 KOG0310 Conserved WD40 repeat- 100.0 1.3E-34 2.9E-39 235.9 22.6 263 85-363 24-290 (487)
58 KOG0310 Conserved WD40 repeat- 100.0 4.7E-34 1E-38 232.8 25.1 279 47-342 28-311 (487)
59 KOG0306 WD40-repeat-containing 100.0 5.4E-34 1.2E-38 243.7 25.9 286 37-341 367-665 (888)
60 KOG0275 Conserved WD40 repeat- 100.0 3E-35 6.5E-40 228.6 16.3 278 47-338 215-507 (508)
61 KOG0289 mRNA splicing factor [ 100.0 6.5E-34 1.4E-38 228.7 24.4 275 48-339 222-505 (506)
62 KOG0643 Translation initiation 100.0 6.3E-34 1.4E-38 215.2 22.8 285 48-341 13-318 (327)
63 PTZ00421 coronin; Provisional 100.0 1.5E-32 3.2E-37 240.3 34.8 266 47-321 24-314 (493)
64 KOG0313 Microtubule binding pr 100.0 1.8E-33 3.9E-38 222.5 25.8 279 44-340 104-418 (423)
65 KOG0274 Cdc4 and related F-box 100.0 1.7E-33 3.7E-38 246.4 28.1 280 47-349 210-491 (537)
66 KOG0277 Peroxisomal targeting 100.0 5.1E-34 1.1E-38 214.2 20.9 263 91-363 12-289 (311)
67 PTZ00421 coronin; Provisional 100.0 1.9E-32 4.1E-37 239.6 33.3 268 89-364 22-315 (493)
68 KOG0283 WD40 repeat-containing 100.0 6.9E-34 1.5E-38 246.5 24.0 245 82-343 261-579 (712)
69 KOG0292 Vesicle coat complex C 100.0 2.9E-33 6.2E-38 243.3 26.9 280 48-341 12-322 (1202)
70 KOG0772 Uncharacterized conser 100.0 3.8E-33 8.3E-38 229.0 25.2 289 47-338 169-485 (641)
71 KOG0275 Conserved WD40 repeat- 100.0 7.1E-34 1.5E-38 221.0 17.8 265 85-363 211-490 (508)
72 KOG0306 WD40-repeat-containing 100.0 1.9E-32 4.2E-37 234.3 27.7 303 47-363 322-645 (888)
73 KOG0294 WD40 repeat-containing 100.0 2.4E-32 5.3E-37 211.3 25.1 266 58-342 4-283 (362)
74 KOG1446 Histone H3 (Lys4) meth 100.0 4.7E-31 1E-35 204.6 32.1 278 47-342 16-305 (311)
75 KOG0288 WD40 repeat protein Ti 100.0 1E-33 2.2E-38 226.2 16.0 273 48-338 178-459 (459)
76 KOG0640 mRNA cleavage stimulat 100.0 1.4E-32 3.1E-37 212.3 20.7 282 47-340 114-426 (430)
77 PTZ00420 coronin; Provisional 100.0 6E-31 1.3E-35 231.2 33.5 250 105-364 50-318 (568)
78 KOG0973 Histone transcription 100.0 6.3E-32 1.4E-36 240.3 26.2 270 85-363 11-336 (942)
79 KOG0288 WD40 repeat protein Ti 100.0 3.5E-33 7.6E-38 223.2 15.5 266 81-363 169-442 (459)
80 KOG0643 Translation initiation 100.0 1.6E-30 3.4E-35 196.9 27.0 270 81-363 4-298 (327)
81 KOG1407 WD40 repeat protein [F 100.0 1.6E-30 3.5E-35 196.2 26.6 267 48-331 23-293 (313)
82 KOG0640 mRNA cleavage stimulat 100.0 4.9E-32 1.1E-36 209.4 18.3 273 80-363 105-407 (430)
83 KOG1539 WD repeat protein [Gen 100.0 1.5E-30 3.3E-35 225.1 29.5 296 56-363 173-628 (910)
84 KOG0973 Histone transcription 100.0 2.5E-31 5.5E-36 236.5 25.2 291 45-344 13-359 (942)
85 KOG0264 Nucleosome remodeling 100.0 3.5E-31 7.6E-36 214.4 23.2 250 84-341 121-405 (422)
86 KOG0647 mRNA export protein (c 100.0 7.2E-31 1.6E-35 202.0 23.0 260 85-362 25-303 (347)
87 KOG0647 mRNA export protein (c 100.0 1.9E-30 4.1E-35 199.7 24.7 265 47-328 29-311 (347)
88 KOG0646 WD40 repeat protein [G 100.0 1.4E-30 3E-35 211.5 23.8 286 65-363 18-330 (476)
89 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 6E-29 1.3E-33 209.9 34.9 285 58-362 4-300 (300)
90 KOG0300 WD40 repeat-containing 100.0 2.8E-30 6.1E-35 200.4 23.5 287 41-343 146-479 (481)
91 PTZ00420 coronin; Provisional 100.0 2.2E-29 4.7E-34 221.4 31.7 245 63-322 52-318 (568)
92 KOG0641 WD40 repeat protein [G 100.0 1E-28 2.2E-33 183.0 29.6 264 85-363 30-330 (350)
93 KOG0268 Sof1-like rRNA process 100.0 2.1E-31 4.6E-36 209.7 14.9 263 81-362 60-325 (433)
94 KOG0274 Cdc4 and related F-box 100.0 5.7E-30 1.2E-34 224.4 25.5 253 86-361 207-463 (537)
95 KOG1036 Mitotic spindle checkp 100.0 1.5E-29 3.3E-34 195.4 24.3 257 86-362 12-284 (323)
96 KOG1036 Mitotic spindle checkp 100.0 7.9E-29 1.7E-33 191.4 26.3 264 47-330 15-294 (323)
97 KOG0305 Anaphase promoting com 100.0 3.1E-29 6.6E-34 212.1 25.8 256 92-363 182-442 (484)
98 KOG0299 U3 snoRNP-associated p 100.0 4.9E-29 1.1E-33 202.2 25.6 276 48-340 145-456 (479)
99 KOG0264 Nucleosome remodeling 100.0 9.8E-30 2.1E-34 206.0 21.0 242 48-298 127-404 (422)
100 KOG0268 Sof1-like rRNA process 100.0 4.4E-30 9.4E-35 202.4 18.1 277 48-347 69-352 (433)
101 KOG0269 WD40 repeat-containing 100.0 4.7E-30 1E-34 220.4 19.9 288 48-344 42-344 (839)
102 KOG0772 Uncharacterized conser 100.0 1.4E-29 2.9E-34 208.3 20.6 272 81-363 161-468 (641)
103 KOG1408 WD40 repeat protein [F 100.0 1.8E-29 3.9E-34 215.3 21.6 277 57-342 394-715 (1080)
104 KOG0641 WD40 repeat protein [G 100.0 3E-27 6.6E-32 175.2 30.0 284 43-340 30-349 (350)
105 KOG0289 mRNA splicing factor [ 100.0 6E-29 1.3E-33 200.3 22.6 260 88-361 220-485 (506)
106 KOG1408 WD40 repeat protein [F 100.0 1.4E-28 3.1E-33 209.9 26.1 303 48-363 327-694 (1080)
107 KOG1332 Vesicle coat complex C 100.0 3.4E-29 7.3E-34 187.3 18.9 243 48-299 16-287 (299)
108 KOG1274 WD40 repeat protein [G 100.0 2.1E-28 4.6E-33 214.1 26.8 259 85-363 11-281 (933)
109 KOG0299 U3 snoRNP-associated p 100.0 1.5E-28 3.2E-33 199.5 23.6 267 81-363 136-436 (479)
110 KOG0308 Conserved WD40 repeat- 100.0 1.2E-29 2.6E-34 214.0 17.6 243 92-344 29-289 (735)
111 KOG0301 Phospholipase A2-activ 100.0 1.8E-28 4E-33 208.3 24.9 269 49-342 18-290 (745)
112 KOG0283 WD40 repeat-containing 100.0 7.2E-29 1.6E-33 215.5 22.9 239 47-299 269-577 (712)
113 KOG1332 Vesicle coat complex C 100.0 4.4E-29 9.5E-34 186.7 17.5 253 85-341 9-287 (299)
114 KOG0308 Conserved WD40 repeat- 100.0 7.1E-29 1.5E-33 209.3 18.7 272 58-341 40-328 (735)
115 KOG0300 WD40 repeat-containing 100.0 4.7E-28 1E-32 188.2 20.4 282 66-362 127-454 (481)
116 KOG0639 Transducin-like enhanc 100.0 8.1E-28 1.8E-32 197.4 19.6 276 48-339 422-703 (705)
117 KOG4378 Nuclear protein COP1 [ 100.0 2E-27 4.3E-32 194.9 21.6 292 57-363 4-304 (673)
118 KOG0321 WD40 repeat-containing 100.0 3.7E-27 7.9E-32 198.7 23.5 278 57-343 65-394 (720)
119 KOG0302 Ribosome Assembly prot 100.0 3.2E-27 6.9E-32 187.2 21.5 224 56-281 164-427 (440)
120 KOG2106 Uncharacterized conser 100.0 3.7E-25 7.9E-30 181.9 32.7 294 48-363 203-502 (626)
121 KOG0294 WD40 repeat-containing 100.0 1.4E-26 3.1E-31 179.5 23.0 241 101-360 3-257 (362)
122 KOG4283 Transcription-coupled 100.0 3.5E-26 7.6E-31 175.9 24.6 265 85-363 41-346 (397)
123 KOG0269 WD40 repeat-containing 100.0 1E-27 2.2E-32 206.2 17.5 224 47-272 89-319 (839)
124 KOG4328 WD40 protein [Function 100.0 1.3E-26 2.8E-31 188.2 21.7 284 47-340 188-495 (498)
125 KOG1273 WD40 repeat protein [G 100.0 3.8E-26 8.3E-31 177.2 22.5 282 48-344 26-326 (405)
126 KOG2055 WD40 repeat protein [G 100.0 2.4E-26 5.2E-31 186.8 22.3 263 87-363 213-493 (514)
127 KOG2055 WD40 repeat protein [G 100.0 5.7E-26 1.2E-30 184.6 24.1 282 45-340 213-512 (514)
128 KOG2096 WD40 repeat protein [G 100.0 1.6E-25 3.5E-30 174.1 25.5 277 48-338 89-400 (420)
129 KOG0301 Phospholipase A2-activ 100.0 2E-26 4.4E-31 196.0 22.3 256 81-360 8-267 (745)
130 KOG1274 WD40 repeat protein [G 100.0 1.3E-25 2.7E-30 196.9 27.7 271 48-337 16-297 (933)
131 KOG1273 WD40 repeat protein [G 100.0 2.9E-26 6.4E-31 177.9 21.0 262 90-364 26-305 (405)
132 KOG0267 Microtubule severing p 100.0 3.9E-28 8.6E-33 207.2 11.4 247 64-332 13-260 (825)
133 KOG4328 WD40 protein [Function 100.0 2.1E-26 4.4E-31 187.0 20.8 272 83-364 182-476 (498)
134 KOG4283 Transcription-coupled 100.0 4.6E-26 1E-30 175.3 21.5 281 48-339 46-364 (397)
135 KOG2445 Nuclear pore complex c 100.0 2.9E-25 6.4E-30 171.7 24.7 251 85-344 11-322 (361)
136 KOG0639 Transducin-like enhanc 99.9 6.9E-27 1.5E-31 192.0 16.6 262 85-362 417-684 (705)
137 KOG1063 RNA polymerase II elon 99.9 1.9E-25 4.1E-30 190.1 25.2 314 42-363 264-675 (764)
138 KOG4378 Nuclear protein COP1 [ 99.9 5.2E-26 1.1E-30 186.6 20.7 262 48-322 37-305 (673)
139 KOG0270 WD40 repeat-containing 99.9 2.8E-25 6.1E-30 179.8 23.8 269 66-346 153-455 (463)
140 KOG1063 RNA polymerase II elon 99.9 3.3E-25 7.1E-30 188.7 24.4 298 61-363 165-629 (764)
141 KOG2106 Uncharacterized conser 99.9 9.8E-25 2.1E-29 179.4 26.3 294 46-362 247-606 (626)
142 KOG0270 WD40 repeat-containing 99.9 1.2E-25 2.6E-30 181.9 19.9 238 57-304 193-455 (463)
143 KOG0267 Microtubule severing p 99.9 1.8E-27 3.9E-32 203.3 9.4 244 100-363 5-249 (825)
144 KOG0646 WD40 repeat protein [G 99.9 2E-25 4.4E-30 181.7 20.7 251 57-323 52-332 (476)
145 KOG2096 WD40 repeat protein [G 99.9 1.2E-24 2.6E-29 169.3 23.9 268 82-363 81-384 (420)
146 KOG2048 WD40 repeat protein [G 99.9 2.4E-24 5.1E-29 183.1 27.4 279 48-341 28-320 (691)
147 KOG0650 WD40 repeat nucleolar 99.9 3.2E-25 6.9E-30 185.9 20.9 269 81-363 394-716 (733)
148 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.6E-23 3.4E-28 176.9 31.8 255 48-320 33-300 (300)
149 KOG1539 WD repeat protein [Gen 99.9 1.9E-23 4.2E-28 181.5 31.6 295 55-363 124-587 (910)
150 KOG2919 Guanine nucleotide-bin 99.9 3.4E-24 7.4E-29 167.0 23.8 265 89-363 51-351 (406)
151 KOG0302 Ribosome Assembly prot 99.9 1.8E-24 4E-29 171.7 21.7 244 85-338 149-436 (440)
152 KOG1034 Transcriptional repres 99.9 1.8E-24 3.8E-29 168.9 20.8 273 57-340 56-383 (385)
153 KOG2048 WD40 repeat protein [G 99.9 2.8E-23 6.1E-28 176.6 28.8 262 87-362 25-301 (691)
154 KOG0321 WD40 repeat-containing 99.9 2.6E-24 5.5E-29 181.7 19.8 262 92-363 54-371 (720)
155 KOG0307 Vesicle coat complex C 99.9 2E-25 4.3E-30 200.2 13.6 265 91-363 10-307 (1049)
156 KOG1445 Tumor-specific antigen 99.9 7.1E-24 1.5E-28 179.3 21.6 179 23-204 11-201 (1012)
157 KOG0307 Vesicle coat complex C 99.9 9.7E-25 2.1E-29 195.9 15.4 249 86-343 63-330 (1049)
158 KOG1538 Uncharacterized conser 99.9 1.3E-23 2.8E-28 178.7 21.2 277 47-343 14-296 (1081)
159 KOG1188 WD40 repeat protein [G 99.9 1.3E-23 2.7E-28 165.0 19.3 274 58-340 43-346 (376)
160 KOG0650 WD40 repeat nucleolar 99.9 5.5E-23 1.2E-27 172.6 21.7 271 48-337 405-732 (733)
161 KOG2919 Guanine nucleotide-bin 99.9 1.4E-22 2.9E-27 158.2 21.7 271 47-331 51-361 (406)
162 PRK11028 6-phosphogluconolacto 99.9 5.1E-21 1.1E-25 163.1 33.2 271 59-341 6-305 (330)
163 KOG0642 Cell-cycle nuclear pro 99.9 8.6E-24 1.9E-28 176.2 15.5 260 81-351 288-572 (577)
164 KOG1009 Chromatin assembly com 99.9 1.1E-22 2.4E-27 163.1 21.2 278 57-344 28-376 (434)
165 KOG2445 Nuclear pore complex c 99.9 8.9E-22 1.9E-26 152.6 24.8 243 47-298 17-318 (361)
166 KOG1587 Cytoplasmic dynein int 99.9 3.4E-22 7.3E-27 174.4 25.2 267 65-342 222-518 (555)
167 KOG0290 Conserved WD40 repeat- 99.9 4.6E-22 1E-26 153.0 22.4 268 87-364 44-347 (364)
168 KOG0290 Conserved WD40 repeat- 99.9 2E-21 4.4E-26 149.5 23.7 281 45-336 44-361 (364)
169 KOG0303 Actin-binding protein 99.9 2.8E-21 6.1E-26 154.7 22.4 230 124-364 76-321 (472)
170 KOG1007 WD repeat protein TSSC 99.9 2.2E-21 4.9E-26 149.2 20.6 269 48-340 66-361 (370)
171 KOG1009 Chromatin assembly com 99.9 3.2E-21 6.9E-26 154.9 19.5 269 87-363 13-353 (434)
172 KOG0303 Actin-binding protein 99.9 7.7E-21 1.7E-25 152.2 21.6 208 83-301 77-297 (472)
173 KOG4227 WD40 repeat protein [G 99.9 6.6E-21 1.4E-25 152.7 21.1 269 83-363 52-368 (609)
174 COG2319 FOG: WD40 repeat [Gene 99.9 1.6E-19 3.4E-24 160.0 32.6 266 83-360 61-336 (466)
175 COG2319 FOG: WD40 repeat [Gene 99.9 1E-18 2.2E-23 154.8 37.0 298 48-362 68-380 (466)
176 PRK01742 tolB translocation pr 99.9 1.2E-20 2.5E-25 165.8 21.7 235 108-363 183-426 (429)
177 KOG1007 WD repeat protein TSSC 99.9 6.1E-21 1.3E-25 146.8 17.0 202 47-251 125-361 (370)
178 KOG1524 WD40 repeat-containing 99.9 1.3E-20 2.8E-25 156.6 20.1 259 49-338 18-284 (737)
179 KOG1034 Transcriptional repres 99.9 6.9E-21 1.5E-25 149.0 17.4 243 42-298 88-383 (385)
180 KOG1188 WD40 repeat protein [G 99.9 1.5E-20 3.2E-25 147.9 18.1 231 100-340 41-297 (376)
181 KOG0322 G-protein beta subunit 99.9 3.3E-20 7.2E-25 141.0 18.2 292 29-339 2-322 (323)
182 KOG1517 Guanine nucleotide bin 99.9 1E-19 2.2E-24 162.6 24.0 285 48-343 1067-1384(1387)
183 KOG1538 Uncharacterized conser 99.9 3E-20 6.5E-25 158.5 19.8 252 89-363 14-274 (1081)
184 KOG1963 WD40 repeat protein [G 99.9 2.9E-19 6.4E-24 156.9 24.5 286 49-342 164-540 (792)
185 KOG0649 WD40 repeat protein [G 99.9 2.8E-19 6.2E-24 134.5 19.7 231 89-341 12-275 (325)
186 KOG4227 WD40 repeat protein [G 99.9 1.9E-19 4.1E-24 144.4 19.6 283 46-340 57-387 (609)
187 PRK01742 tolB translocation pr 99.9 2.9E-19 6.3E-24 156.9 22.8 234 65-321 184-426 (429)
188 KOG1523 Actin-related protein 99.9 4.3E-19 9.3E-24 138.6 20.9 231 48-282 13-269 (361)
189 KOG0644 Uncharacterized conser 99.8 4.5E-21 9.7E-26 167.1 10.4 262 82-363 185-449 (1113)
190 PRK11028 6-phosphogluconolacto 99.8 3.4E-18 7.4E-23 145.8 28.1 250 103-363 6-284 (330)
191 KOG2110 Uncharacterized conser 99.8 6.1E-18 1.3E-22 134.7 26.9 242 87-343 5-251 (391)
192 KOG0644 Uncharacterized conser 99.8 9.3E-21 2E-25 165.1 11.6 280 42-345 189-473 (1113)
193 KOG0642 Cell-cycle nuclear pro 99.8 6.7E-20 1.5E-24 153.2 15.1 251 47-310 296-573 (577)
194 PRK04922 tolB translocation pr 99.8 3.4E-18 7.3E-23 150.5 25.0 239 109-363 184-433 (433)
195 KOG1587 Cytoplasmic dynein int 99.8 4.2E-18 9.1E-23 149.0 25.2 246 109-362 222-496 (555)
196 KOG4497 Uncharacterized conser 99.8 2.6E-19 5.6E-24 140.5 15.8 289 51-364 14-373 (447)
197 KOG0649 WD40 repeat protein [G 99.8 1.5E-17 3.2E-22 125.3 23.9 267 51-337 16-313 (325)
198 KOG1310 WD40 repeat protein [G 99.8 2.4E-19 5.1E-24 149.7 15.6 246 81-346 44-309 (758)
199 PF02239 Cytochrom_D1: Cytochr 99.8 1.3E-16 2.9E-21 135.8 32.3 283 56-349 5-356 (369)
200 KOG1523 Actin-related protein 99.8 2.4E-18 5.2E-23 134.5 19.6 226 125-360 6-257 (361)
201 PRK03629 tolB translocation pr 99.8 2.6E-17 5.6E-22 144.3 28.6 238 110-363 180-428 (429)
202 KOG0322 G-protein beta subunit 99.8 8.4E-19 1.8E-23 133.4 16.1 267 80-363 7-304 (323)
203 PRK03629 tolB translocation pr 99.8 3.3E-17 7.1E-22 143.7 28.7 240 66-321 180-428 (429)
204 KOG1334 WD40 repeat protein [G 99.8 3.2E-19 7E-24 146.7 14.4 273 82-362 137-446 (559)
205 KOG2139 WD40 repeat protein [G 99.8 7.8E-18 1.7E-22 133.8 21.6 239 88-342 99-385 (445)
206 KOG1524 WD40 repeat-containing 99.8 6.2E-19 1.4E-23 146.8 15.4 199 58-282 78-276 (737)
207 KOG2139 WD40 repeat protein [G 99.8 3E-17 6.5E-22 130.5 23.4 283 45-340 98-431 (445)
208 KOG1963 WD40 repeat protein [G 99.8 1.4E-16 3.1E-21 140.2 28.9 286 51-349 22-384 (792)
209 KOG2110 Uncharacterized conser 99.8 7.2E-16 1.6E-20 123.1 29.9 272 50-342 10-332 (391)
210 PRK05137 tolB translocation pr 99.8 1.4E-16 3.1E-21 140.5 28.4 239 110-363 183-433 (435)
211 PRK02889 tolB translocation pr 99.8 5.6E-17 1.2E-21 142.4 25.7 241 109-363 176-425 (427)
212 KOG1272 WD40-repeat-containing 99.8 5E-19 1.1E-23 144.8 11.5 266 49-336 133-405 (545)
213 PRK04922 tolB translocation pr 99.8 9.5E-17 2.1E-21 141.4 25.5 239 66-320 185-432 (433)
214 KOG0771 Prolactin regulatory e 99.8 4.3E-18 9.3E-23 137.8 15.2 197 133-342 148-356 (398)
215 PF10282 Lactonase: Lactonase, 99.8 1.1E-14 2.5E-19 124.2 37.0 287 65-360 13-345 (345)
216 KOG2111 Uncharacterized conser 99.8 9E-16 2E-20 120.2 26.7 239 89-344 7-260 (346)
217 KOG1445 Tumor-specific antigen 99.8 2.6E-18 5.6E-23 146.0 13.7 211 41-255 623-848 (1012)
218 KOG1517 Guanine nucleotide bin 99.8 7.2E-17 1.6E-21 144.7 22.5 265 87-364 1064-1363(1387)
219 PRK02889 tolB translocation pr 99.8 3.5E-16 7.5E-21 137.4 26.1 245 65-321 176-425 (427)
220 KOG1272 WD40-repeat-containing 99.8 8.1E-19 1.7E-23 143.6 7.9 213 130-361 130-343 (545)
221 KOG2394 WD40 protein DMR-N9 [G 99.8 6.5E-17 1.4E-21 134.9 19.2 260 58-344 137-456 (636)
222 PRK05137 tolB translocation pr 99.8 1.4E-15 2.9E-20 134.3 28.4 240 66-321 183-433 (435)
223 KOG4497 Uncharacterized conser 99.8 1.2E-15 2.7E-20 120.0 23.9 272 48-333 51-425 (447)
224 KOG0771 Prolactin regulatory e 99.8 4.4E-17 9.6E-22 132.1 15.7 197 91-298 148-354 (398)
225 KOG2315 Predicted translation 99.8 2.8E-15 6.1E-20 126.0 26.0 299 48-363 37-365 (566)
226 PF08662 eIF2A: Eukaryotic tra 99.7 3.5E-16 7.6E-21 121.3 19.0 157 177-342 9-181 (194)
227 KOG1240 Protein kinase contain 99.7 2.8E-15 6.1E-20 136.6 26.1 282 48-338 1051-1431(1431)
228 KOG1334 WD40 repeat protein [G 99.7 8.2E-17 1.8E-21 132.8 14.8 287 47-343 144-469 (559)
229 PF08662 eIF2A: Eukaryotic tra 99.7 8.6E-16 1.9E-20 119.1 19.8 165 133-306 9-186 (194)
230 KOG1240 Protein kinase contain 99.7 2.5E-15 5.5E-20 136.9 24.2 257 80-345 1041-1339(1431)
231 KOG1354 Serine/threonine prote 99.7 1.5E-15 3.2E-20 120.2 19.2 247 87-343 25-362 (433)
232 KOG3881 Uncharacterized conser 99.7 2.3E-15 4.9E-20 121.1 20.1 260 85-360 53-339 (412)
233 PRK00178 tolB translocation pr 99.7 1.8E-14 4E-19 127.4 28.1 240 110-363 180-428 (430)
234 PF02239 Cytochrom_D1: Cytochr 99.7 3.6E-14 7.7E-19 121.0 28.2 249 50-307 41-356 (369)
235 KOG1310 WD40 repeat protein [G 99.7 2.5E-16 5.3E-21 131.9 14.2 209 44-256 49-308 (758)
236 KOG2111 Uncharacterized conser 99.7 1.6E-13 3.5E-18 107.8 28.7 273 51-340 11-322 (346)
237 KOG3881 Uncharacterized conser 99.7 1.8E-15 3.9E-20 121.7 18.3 219 49-274 109-343 (412)
238 PRK04792 tolB translocation pr 99.7 2.7E-14 5.9E-19 125.8 27.5 240 110-363 199-447 (448)
239 PRK01029 tolB translocation pr 99.7 3.6E-14 7.7E-19 124.1 27.1 249 65-322 165-426 (428)
240 KOG2394 WD40 protein DMR-N9 [G 99.7 2.1E-15 4.5E-20 126.1 18.3 243 90-362 126-384 (636)
241 TIGR02800 propeller_TolB tol-p 99.7 4.5E-14 9.7E-19 124.8 27.5 238 110-361 171-417 (417)
242 COG2706 3-carboxymuconate cycl 99.7 1.7E-12 3.7E-17 104.3 33.0 289 64-361 15-345 (346)
243 PRK00178 tolB translocation pr 99.7 4.6E-14 1E-18 124.9 26.9 238 66-321 180-428 (430)
244 KOG1409 Uncharacterized conser 99.7 1.1E-14 2.3E-19 115.5 18.9 287 41-341 22-395 (404)
245 KOG2315 Predicted translation 99.7 6.7E-14 1.5E-18 117.8 24.1 263 65-343 105-393 (566)
246 TIGR02800 propeller_TolB tol-p 99.7 9.1E-14 2E-18 122.8 26.6 237 66-318 171-416 (417)
247 KOG0280 Uncharacterized conser 99.7 1E-13 2.3E-18 107.7 23.1 269 64-343 45-336 (339)
248 TIGR02658 TTQ_MADH_Hv methylam 99.7 1.8E-12 3.9E-17 108.1 31.8 270 65-348 27-338 (352)
249 PRK04792 tolB translocation pr 99.7 1.2E-13 2.6E-18 121.8 26.3 238 66-321 199-447 (448)
250 KOG2321 WD40 repeat protein [G 99.7 2.9E-14 6.2E-19 120.3 20.7 259 85-362 49-323 (703)
251 PRK01029 tolB translocation pr 99.7 1.7E-13 3.7E-18 119.9 25.7 244 109-363 165-425 (428)
252 KOG2321 WD40 repeat protein [G 99.6 1.2E-13 2.6E-18 116.6 21.4 278 47-342 53-345 (703)
253 KOG0309 Conserved WD40 repeat- 99.6 1.3E-14 2.7E-19 126.0 14.5 286 48-341 27-340 (1081)
254 PF10282 Lactonase: Lactonase, 99.6 1.9E-11 4.1E-16 104.5 32.9 262 49-318 40-345 (345)
255 KOG1912 WD40 repeat protein [G 99.6 1.9E-12 4.2E-17 113.3 25.4 247 36-296 8-302 (1062)
256 COG5354 Uncharacterized protei 99.6 4.5E-12 9.7E-17 105.9 23.7 300 45-363 32-370 (561)
257 KOG2041 WD40 repeat protein [G 99.5 1E-12 2.2E-17 114.1 18.4 259 87-361 14-317 (1189)
258 KOG0974 WD-repeat protein WDR6 99.5 9.2E-12 2E-16 112.4 24.8 141 57-204 147-289 (967)
259 KOG2041 WD40 repeat protein [G 99.5 1.9E-12 4.2E-17 112.5 19.5 290 41-338 10-335 (1189)
260 COG4946 Uncharacterized protei 99.5 6.8E-11 1.5E-15 98.3 27.4 277 49-341 325-655 (668)
261 KOG2314 Translation initiation 99.5 1.5E-11 3.3E-16 103.9 24.0 285 48-343 252-576 (698)
262 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.5E-10 3.3E-15 96.7 29.5 234 63-306 75-338 (352)
263 KOG4547 WD40 repeat-containing 99.5 2E-12 4.3E-17 109.9 18.4 186 58-252 8-221 (541)
264 KOG0974 WD-repeat protein WDR6 99.5 8.5E-13 1.8E-17 118.9 16.3 191 49-252 93-289 (967)
265 KOG4547 WD40 repeat-containing 99.5 4E-11 8.8E-16 102.1 23.3 189 97-299 3-221 (541)
266 KOG1354 Serine/threonine prote 99.5 1.8E-11 3.8E-16 97.6 19.5 240 48-300 28-361 (433)
267 PLN02919 haloacid dehalogenase 99.5 1.8E-10 4E-15 111.0 30.4 239 90-344 570-892 (1057)
268 KOG0280 Uncharacterized conser 99.5 1.1E-11 2.3E-16 96.7 17.5 232 58-299 88-334 (339)
269 COG5170 CDC55 Serine/threonine 99.5 4.9E-12 1.1E-16 99.4 15.7 245 86-340 25-367 (460)
270 COG2706 3-carboxymuconate cycl 99.5 7.1E-10 1.5E-14 89.4 27.4 228 108-343 15-277 (346)
271 KOG2314 Translation initiation 99.4 1.4E-10 3E-15 98.2 24.0 302 47-363 212-548 (698)
272 TIGR03300 assembly_YfgL outer 99.4 5.2E-10 1.1E-14 97.4 27.9 268 56-353 66-351 (377)
273 PF04762 IKI3: IKI3 family; I 99.4 4.8E-10 1E-14 106.2 29.0 284 48-342 78-458 (928)
274 COG5354 Uncharacterized protei 99.4 2.3E-10 4.9E-15 95.9 23.1 262 51-332 137-421 (561)
275 KOG1064 RAVE (regulator of V-A 99.4 1.3E-12 2.7E-17 123.9 11.0 193 48-261 2211-2408(2439)
276 PRK04043 tolB translocation pr 99.4 1.7E-09 3.7E-14 94.3 28.8 237 110-360 170-419 (419)
277 PF15492 Nbas_N: Neuroblastoma 99.4 2.2E-09 4.9E-14 84.1 25.7 236 93-351 3-270 (282)
278 KOG1064 RAVE (regulator of V-A 99.4 4.5E-12 9.8E-17 120.3 12.9 198 127-349 2206-2407(2439)
279 COG4946 Uncharacterized protei 99.4 4.3E-10 9.3E-15 93.6 22.8 216 56-280 278-506 (668)
280 KOG4532 WD40-like repeat conta 99.4 7.7E-10 1.7E-14 85.5 21.0 263 61-343 48-334 (344)
281 PRK04043 tolB translocation pr 99.3 4.3E-09 9.3E-14 91.8 28.1 215 65-299 169-401 (419)
282 KOG4532 WD40-like repeat conta 99.3 8E-10 1.7E-14 85.4 20.5 217 58-279 87-319 (344)
283 TIGR03300 assembly_YfgL outer 99.3 1.6E-09 3.6E-14 94.3 25.3 254 56-337 106-376 (377)
284 PF15492 Nbas_N: Neuroblastoma 99.3 8.4E-09 1.8E-13 80.9 24.9 235 56-311 9-272 (282)
285 PF04762 IKI3: IKI3 family; I 99.3 1.3E-08 2.9E-13 96.7 30.2 242 89-342 211-521 (928)
286 PF08450 SGL: SMP-30/Gluconola 99.3 5.1E-08 1.1E-12 79.6 29.9 218 92-329 4-244 (246)
287 PLN02919 haloacid dehalogenase 99.3 1.5E-08 3.2E-13 98.1 30.3 229 62-302 587-892 (1057)
288 KOG4190 Uncharacterized conser 99.3 4.5E-11 9.7E-16 101.3 11.6 245 78-338 726-986 (1034)
289 KOG1409 Uncharacterized conser 99.3 1.6E-09 3.4E-14 86.7 19.5 251 78-344 15-274 (404)
290 KOG3914 WD repeat protein WDR4 99.3 1.2E-10 2.7E-15 94.7 13.6 166 176-349 65-232 (390)
291 KOG1645 RING-finger-containing 99.3 3.8E-10 8.2E-15 91.9 16.0 261 67-341 175-462 (463)
292 KOG4190 Uncharacterized conser 99.2 3.2E-11 7E-16 102.1 8.8 207 122-342 728-950 (1034)
293 KOG1832 HIV-1 Vpr-binding prot 99.2 1.3E-11 2.7E-16 110.0 4.6 218 81-327 1095-1318(1516)
294 KOG1912 WD40 repeat protein [G 99.2 8.3E-09 1.8E-13 91.2 21.5 240 88-341 16-305 (1062)
295 KOG4714 Nucleoporin [Nuclear s 99.2 3.7E-10 8.1E-15 86.8 11.6 147 56-204 102-255 (319)
296 PF08450 SGL: SMP-30/Gluconola 99.2 7.1E-08 1.5E-12 78.7 26.0 213 134-361 4-233 (246)
297 KOG3914 WD repeat protein WDR4 99.2 8.3E-10 1.8E-14 90.0 14.0 163 89-261 64-233 (390)
298 PRK11138 outer membrane biogen 99.2 4.6E-08 9.9E-13 85.7 25.0 275 55-349 69-362 (394)
299 KOG3617 WD40 and TPR repeat-co 99.1 3.6E-09 7.8E-14 94.3 17.0 296 47-364 17-367 (1416)
300 KOG0309 Conserved WD40 repeat- 99.1 1.1E-09 2.4E-14 96.0 12.3 206 129-344 24-236 (1081)
301 KOG0882 Cyclophilin-related pe 99.1 8.7E-09 1.9E-13 85.4 16.4 269 56-337 21-369 (558)
302 KOG4714 Nucleoporin [Nuclear s 99.1 3.6E-09 7.8E-14 81.5 13.0 153 94-252 96-255 (319)
303 PRK11138 outer membrane biogen 99.1 2.4E-07 5.2E-12 81.2 25.7 256 56-339 121-393 (394)
304 KOG2695 WD40 repeat protein [G 99.1 1.1E-09 2.5E-14 87.5 9.2 162 94-262 218-387 (425)
305 PF13360 PQQ_2: PQQ-like domai 99.1 5E-07 1.1E-11 73.4 25.2 220 64-304 2-236 (238)
306 PF07433 DUF1513: Protein of u 99.1 1.3E-06 2.8E-11 70.9 26.5 223 50-279 9-273 (305)
307 COG5170 CDC55 Serine/threonine 99.0 5.3E-09 1.1E-13 82.7 12.5 205 128-343 25-312 (460)
308 KOG0882 Cyclophilin-related pe 99.0 2.5E-08 5.5E-13 82.7 14.7 250 85-348 7-313 (558)
309 PF00930 DPPIV_N: Dipeptidyl p 99.0 1.4E-06 3.1E-11 75.0 26.2 256 64-329 22-346 (353)
310 PF13360 PQQ_2: PQQ-like domai 99.0 3.9E-07 8.5E-12 74.1 21.7 215 108-345 2-235 (238)
311 KOG2114 Vacuolar assembly/sort 99.0 3.1E-07 6.7E-12 82.5 21.8 208 94-313 30-259 (933)
312 PF00400 WD40: WD domain, G-be 99.0 1.7E-09 3.6E-14 60.2 5.2 39 300-338 1-39 (39)
313 PF07433 DUF1513: Protein of u 98.9 7.7E-06 1.7E-10 66.6 27.3 231 89-334 6-279 (305)
314 KOG2066 Vacuolar assembly/sort 98.9 7.1E-08 1.5E-12 85.8 16.9 183 87-298 39-233 (846)
315 KOG1832 HIV-1 Vpr-binding prot 98.9 1.2E-09 2.7E-14 97.7 4.2 201 120-348 1092-1299(1516)
316 KOG1645 RING-finger-containing 98.9 1.8E-07 3.8E-12 76.8 16.1 242 111-360 175-438 (463)
317 KOG1920 IkappaB kinase complex 98.9 9E-07 1.9E-11 82.6 22.5 207 129-342 68-324 (1265)
318 KOG1275 PAB-dependent poly(A) 98.9 7.4E-08 1.6E-12 86.9 15.0 180 99-296 147-340 (1118)
319 KOG2695 WD40 repeat protein [G 98.9 9.6E-09 2.1E-13 82.3 8.1 167 180-361 218-401 (425)
320 PF06977 SdiA-regulated: SdiA- 98.9 7.4E-06 1.6E-10 65.6 24.1 195 81-280 15-239 (248)
321 KOG1275 PAB-dependent poly(A) 98.9 1.4E-07 3.1E-12 85.1 15.6 185 54-250 146-341 (1118)
322 PRK02888 nitrous-oxide reducta 98.8 2.3E-06 4.9E-11 76.1 22.6 246 65-329 152-450 (635)
323 PF00400 WD40: WD domain, G-be 98.8 1.6E-08 3.4E-13 56.2 6.2 39 119-158 1-39 (39)
324 KOG2066 Vacuolar assembly/sort 98.8 4.6E-07 9.9E-12 80.9 17.9 183 47-252 41-234 (846)
325 KOG1920 IkappaB kinase complex 98.8 3.3E-06 7.2E-11 79.0 24.0 241 87-339 68-364 (1265)
326 KOG2114 Vacuolar assembly/sort 98.8 9.4E-07 2E-11 79.5 19.4 203 136-352 30-256 (933)
327 cd00216 PQQ_DH Dehydrogenases 98.8 1.2E-05 2.7E-10 72.2 26.8 279 56-349 62-433 (488)
328 COG3391 Uncharacterized conser 98.8 6.2E-05 1.3E-09 65.4 29.6 269 67-349 13-292 (381)
329 PF14583 Pectate_lyase22: Olig 98.8 5.9E-05 1.3E-09 63.5 27.9 279 57-342 49-383 (386)
330 KOG1008 Uncharacterized conser 98.8 5.4E-09 1.2E-13 90.5 4.1 261 87-362 56-353 (783)
331 KOG3621 WD40 repeat-containing 98.8 2.7E-06 5.8E-11 75.1 20.1 137 44-182 34-179 (726)
332 COG0823 TolB Periplasmic compo 98.7 2.9E-06 6.3E-11 73.9 19.3 203 66-281 174-388 (425)
333 PF06433 Me-amine-dh_H: Methyl 98.7 7.4E-05 1.6E-09 61.7 25.9 235 65-308 67-330 (342)
334 PF00780 CNH: CNH domain; Int 98.7 4.4E-05 9.6E-10 63.5 24.8 228 97-350 5-265 (275)
335 PF08596 Lgl_C: Lethal giant l 98.7 1.4E-05 3.1E-10 68.9 21.7 240 89-340 3-335 (395)
336 KOG4649 PQQ (pyrrolo-quinoline 98.7 8.9E-05 1.9E-09 58.0 25.3 190 58-265 26-220 (354)
337 PF04053 Coatomer_WDAD: Coatom 98.7 4.3E-05 9.3E-10 66.9 24.3 221 85-341 30-263 (443)
338 PF11768 DUF3312: Protein of u 98.6 2.8E-06 6.1E-11 73.8 16.2 133 66-204 185-330 (545)
339 PF11768 DUF3312: Protein of u 98.6 8.2E-07 1.8E-11 76.9 13.0 76 85-163 257-332 (545)
340 PF06433 Me-amine-dh_H: Methyl 98.6 0.00019 4E-09 59.4 26.5 272 65-350 17-330 (342)
341 KOG1008 Uncharacterized conser 98.6 1.7E-08 3.6E-13 87.5 2.4 200 46-252 57-276 (783)
342 cd00216 PQQ_DH Dehydrogenases 98.6 0.00011 2.3E-09 66.3 26.1 238 56-308 111-434 (488)
343 COG0823 TolB Periplasmic compo 98.5 3.7E-05 8E-10 67.1 20.7 240 110-363 174-424 (425)
344 PF00780 CNH: CNH domain; Int 98.5 0.00036 7.7E-09 58.1 25.8 227 56-309 8-266 (275)
345 KOG3617 WD40 and TPR repeat-co 98.5 1.3E-06 2.8E-11 78.6 11.1 114 87-204 15-132 (1416)
346 PRK02888 nitrous-oxide reducta 98.5 0.00023 4.9E-09 63.8 24.5 223 98-341 140-405 (635)
347 PF02897 Peptidase_S9_N: Proly 98.5 0.00092 2E-08 59.2 28.8 247 90-344 126-408 (414)
348 PF04841 Vps16_N: Vps16, N-ter 98.4 0.00049 1.1E-08 60.3 25.4 195 110-323 62-272 (410)
349 KOG3621 WD40 repeat-containing 98.4 4E-06 8.7E-11 74.0 12.2 159 87-252 33-198 (726)
350 PF06977 SdiA-regulated: SdiA- 98.4 0.00051 1.1E-08 55.2 23.6 202 124-337 16-247 (248)
351 COG3391 Uncharacterized conser 98.4 0.001 2.2E-08 57.9 27.1 225 88-321 74-309 (381)
352 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00052 1.1E-08 53.9 25.1 101 56-160 64-165 (354)
353 PF03178 CPSF_A: CPSF A subuni 98.4 0.00066 1.4E-08 57.8 24.4 196 65-272 2-237 (321)
354 PF04053 Coatomer_WDAD: Coatom 98.4 0.00045 9.7E-09 60.7 23.4 222 45-298 32-262 (443)
355 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00028 6.2E-09 60.9 21.8 229 47-281 44-346 (353)
356 PF08553 VID27: VID27 cytoplas 98.3 0.00011 2.4E-09 68.1 19.1 144 99-250 493-646 (794)
357 KOG4640 Anaphase-promoting com 98.2 6.1E-06 1.3E-10 72.0 8.9 95 87-183 20-115 (665)
358 COG3204 Uncharacterized protei 98.2 0.00083 1.8E-08 53.9 19.2 172 84-259 82-270 (316)
359 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0048 1E-07 56.1 28.7 284 56-350 70-500 (527)
360 KOG4640 Anaphase-promoting com 98.2 1.3E-05 2.8E-10 70.1 9.0 95 262-363 20-116 (665)
361 PF02897 Peptidase_S9_N: Proly 98.1 0.0028 6E-08 56.2 23.8 199 132-340 126-357 (414)
362 PF04841 Vps16_N: Vps16, N-ter 98.1 0.005 1.1E-07 54.1 27.2 194 66-277 62-274 (410)
363 PF08553 VID27: VID27 cytoplas 98.1 0.00044 9.6E-09 64.3 18.6 134 64-202 503-646 (794)
364 PF14870 PSII_BNR: Photosynthe 98.1 0.0039 8.5E-08 51.8 23.1 232 45-295 61-301 (302)
365 PF08596 Lgl_C: Lethal giant l 98.1 0.0013 2.8E-08 57.1 20.0 212 131-349 3-299 (395)
366 COG3386 Gluconolactonase [Carb 98.0 0.0058 1.3E-07 51.1 22.6 218 51-279 30-272 (307)
367 COG3386 Gluconolactonase [Carb 98.0 0.0027 5.9E-08 53.0 19.3 213 136-360 31-262 (307)
368 PF03178 CPSF_A: CPSF A subuni 97.9 0.0036 7.7E-08 53.4 19.8 132 65-203 62-202 (321)
369 smart00320 WD40 WD40 repeats. 97.9 2.6E-05 5.6E-10 42.4 4.7 38 301-338 3-40 (40)
370 PF07995 GSDH: Glucose / Sorbo 97.9 0.013 2.7E-07 50.1 23.7 236 89-335 3-330 (331)
371 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0031 6.7E-08 43.1 14.7 100 90-198 2-109 (111)
372 PF14655 RAB3GAP2_N: Rab3 GTPa 97.9 0.0092 2E-07 51.8 21.1 82 263-350 308-408 (415)
373 PRK13616 lipoprotein LpqB; Pro 97.8 0.0046 9.9E-08 56.7 19.9 200 58-272 323-550 (591)
374 KOG2395 Protein involved in va 97.8 0.0005 1.1E-08 59.4 12.7 144 98-251 344-500 (644)
375 PRK13616 lipoprotein LpqB; Pro 97.8 0.01 2.2E-07 54.6 21.2 185 130-335 350-563 (591)
376 COG3490 Uncharacterized protei 97.7 0.014 3.1E-07 46.8 19.3 212 131-346 69-316 (366)
377 KOG4441 Proteins containing BT 97.7 0.0076 1.7E-07 55.3 19.7 222 65-299 301-547 (571)
378 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.034 7.4E-07 50.7 27.5 245 56-309 121-501 (527)
379 PHA02713 hypothetical protein; 97.7 0.0069 1.5E-07 55.6 19.2 231 110-354 273-547 (557)
380 smart00320 WD40 WD40 repeats. 97.7 0.00013 2.8E-09 39.5 5.2 38 120-158 3-40 (40)
381 PF14870 PSII_BNR: Photosynthe 97.7 0.024 5.1E-07 47.2 21.1 156 85-248 142-301 (302)
382 KOG1897 Damage-specific DNA bi 97.7 0.053 1.2E-06 51.1 30.0 294 58-360 502-876 (1096)
383 PF10647 Gmad1: Lipoprotein Lp 97.6 0.027 5.9E-07 46.0 22.0 155 89-247 25-192 (253)
384 PF14583 Pectate_lyase22: Olig 97.6 0.04 8.6E-07 47.0 22.2 232 91-331 39-303 (386)
385 PHA02713 hypothetical protein; 97.5 0.0083 1.8E-07 55.1 16.9 176 66-254 321-536 (557)
386 KOG4441 Proteins containing BT 97.5 0.022 4.8E-07 52.3 19.5 235 96-343 282-549 (571)
387 KOG4499 Ca2+-binding protein R 97.5 0.028 6.1E-07 43.8 19.0 205 100-320 28-263 (310)
388 KOG1897 Damage-specific DNA bi 97.5 0.098 2.1E-06 49.4 28.2 286 42-343 582-901 (1096)
389 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.018 3.9E-07 39.4 14.2 102 221-336 2-110 (111)
390 PF14655 RAB3GAP2_N: Rab3 GTPa 97.4 0.032 6.9E-07 48.6 17.6 107 92-201 6-144 (415)
391 COG3490 Uncharacterized protei 97.4 0.051 1.1E-06 43.8 21.1 206 48-259 70-318 (366)
392 PF12894 Apc4_WD40: Anaphase-p 97.3 0.00096 2.1E-08 38.0 5.3 34 87-121 11-44 (47)
393 COG3204 Uncharacterized protei 97.3 0.073 1.6E-06 43.2 19.5 176 27-204 67-264 (316)
394 KOG2079 Vacuolar assembly/sort 97.2 0.0013 2.8E-08 61.7 7.9 99 58-160 102-203 (1206)
395 KOG2079 Vacuolar assembly/sort 97.2 0.015 3.3E-07 55.0 14.4 102 141-250 98-202 (1206)
396 KOG2395 Protein involved in va 97.1 0.012 2.7E-07 51.2 12.3 136 61-203 352-500 (644)
397 KOG2444 WD40 repeat protein [G 97.1 0.0021 4.6E-08 49.6 6.9 103 56-161 71-178 (238)
398 KOG4499 Ca2+-binding protein R 97.1 0.085 1.8E-06 41.3 16.8 212 141-361 26-262 (310)
399 COG5276 Uncharacterized conser 97.1 0.11 2.3E-06 42.2 26.4 267 52-340 93-369 (370)
400 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0025 5.5E-08 36.2 5.3 31 310-340 11-41 (47)
401 COG5276 Uncharacterized conser 97.1 0.12 2.5E-06 42.0 23.6 195 128-342 85-287 (370)
402 PF05694 SBP56: 56kDa selenium 97.1 0.15 3.2E-06 44.2 17.8 174 65-238 157-393 (461)
403 PF15390 DUF4613: Domain of un 97.1 0.14 3.1E-06 45.7 17.9 153 88-252 20-187 (671)
404 KOG2444 WD40 repeat protein [G 97.0 0.0026 5.6E-08 49.1 6.5 142 58-205 33-179 (238)
405 PRK10115 protease 2; Provision 96.9 0.39 8.4E-06 45.6 29.6 242 89-343 128-397 (686)
406 PRK10115 protease 2; Provision 96.9 0.4 8.6E-06 45.5 26.2 200 131-340 128-344 (686)
407 PF05096 Glu_cyclase_2: Glutam 96.9 0.16 3.5E-06 41.0 21.3 194 33-237 32-249 (264)
408 TIGR03118 PEPCTERM_chp_1 conse 96.9 0.18 3.9E-06 41.3 22.3 221 131-361 24-306 (336)
409 PHA03098 kelch-like protein; P 96.9 0.13 2.9E-06 47.3 17.9 178 66-255 312-515 (534)
410 PF10168 Nup88: Nuclear pore c 96.9 0.42 9.2E-06 45.2 21.7 76 88-164 85-183 (717)
411 PF10647 Gmad1: Lipoprotein Lp 96.7 0.25 5.5E-06 40.4 21.6 146 131-281 25-184 (253)
412 KOG3630 Nuclear pore complex, 96.7 0.025 5.4E-07 54.0 11.4 148 88-237 101-262 (1405)
413 PF15390 DUF4613: Domain of un 96.6 0.12 2.7E-06 46.0 14.5 118 85-203 54-186 (671)
414 PF05694 SBP56: 56kDa selenium 96.6 0.021 4.5E-07 49.1 9.7 128 64-192 221-392 (461)
415 KOG2280 Vacuolar assembly/sort 96.6 0.44 9.4E-06 44.0 17.8 182 109-307 64-255 (829)
416 PF05096 Glu_cyclase_2: Glutam 96.5 0.32 7E-06 39.4 22.9 192 120-330 34-250 (264)
417 KOG3630 Nuclear pore complex, 96.5 0.045 9.7E-07 52.4 11.5 146 174-328 101-261 (1405)
418 COG5167 VID27 Protein involved 96.4 0.38 8.2E-06 42.3 15.5 144 98-251 478-632 (776)
419 PHA02790 Kelch-like protein; P 96.4 0.58 1.3E-05 42.5 17.8 172 66-253 288-472 (480)
420 PRK13684 Ycf48-like protein; P 96.3 0.61 1.3E-05 40.0 24.2 152 129-296 172-329 (334)
421 KOG2377 Uncharacterized conser 96.3 0.21 4.6E-06 43.2 13.4 105 85-192 64-172 (657)
422 PF12234 Rav1p_C: RAVE protein 96.3 0.26 5.6E-06 45.4 14.7 116 130-251 30-156 (631)
423 KOG1983 Tomosyn and related SN 96.2 0.31 6.7E-06 48.0 16.1 232 87-344 35-268 (993)
424 PF12234 Rav1p_C: RAVE protein 96.2 0.45 9.7E-06 43.9 16.0 114 87-202 29-155 (631)
425 TIGR03118 PEPCTERM_chp_1 conse 96.2 0.59 1.3E-05 38.5 23.4 220 89-320 24-307 (336)
426 TIGR02604 Piru_Ver_Nterm putat 96.2 0.8 1.7E-05 39.9 17.2 102 88-192 14-142 (367)
427 PF08728 CRT10: CRT10; InterP 96.1 0.5 1.1E-05 44.0 15.9 145 56-202 49-245 (717)
428 PHA03098 kelch-like protein; P 96.1 0.42 9.2E-06 44.1 15.9 148 98-255 294-468 (534)
429 TIGR03074 PQQ_membr_DH membran 96.1 1.5 3.2E-05 42.1 22.5 231 99-348 194-485 (764)
430 PRK13684 Ycf48-like protein; P 96.0 0.91 2E-05 38.9 28.7 149 173-338 172-329 (334)
431 TIGR02604 Piru_Ver_Nterm putat 95.9 0.39 8.5E-06 41.8 14.2 139 48-192 16-202 (367)
432 KOG2247 WD40 repeat-containing 95.8 0.0082 1.8E-07 51.8 3.3 199 48-255 77-284 (615)
433 PF10433 MMS1_N: Mono-function 95.8 1.6 3.4E-05 40.1 27.8 252 96-363 219-504 (504)
434 PF10313 DUF2415: Uncharacteri 95.6 0.081 1.8E-06 29.2 5.4 33 219-253 1-35 (43)
435 PHA02790 Kelch-like protein; P 95.5 1 2.2E-05 40.9 15.6 183 141-342 271-472 (480)
436 KOG1916 Nuclear protein, conta 95.5 0.024 5.3E-07 52.7 5.1 157 65-256 153-328 (1283)
437 PF08728 CRT10: CRT10; InterP 95.5 1.5 3.2E-05 41.1 16.2 107 141-250 113-245 (717)
438 PF14761 HPS3_N: Hermansky-Pud 95.4 0.98 2.1E-05 35.3 14.8 107 143-254 29-166 (215)
439 PF10313 DUF2415: Uncharacteri 95.4 0.094 2E-06 28.9 5.2 32 88-119 1-35 (43)
440 KOG2377 Uncharacterized conser 95.4 1.7 3.8E-05 37.9 18.4 155 92-253 27-187 (657)
441 KOG2280 Vacuolar assembly/sort 95.2 1.1 2.5E-05 41.4 14.4 185 152-349 64-255 (829)
442 PF12657 TFIIIC_delta: Transcr 95.2 0.17 3.8E-06 38.6 8.2 29 47-75 6-34 (173)
443 smart00036 CNH Domain found in 95.1 1.7 3.7E-05 36.7 27.5 232 58-308 15-280 (302)
444 PF14781 BBS2_N: Ciliary BBSom 95.1 0.79 1.7E-05 32.7 12.9 107 92-203 3-125 (136)
445 PF14781 BBS2_N: Ciliary BBSom 95.0 0.85 1.9E-05 32.6 13.0 112 179-301 4-128 (136)
446 KOG1916 Nuclear protein, conta 95.0 0.045 9.7E-07 51.1 5.1 138 108-253 110-257 (1283)
447 TIGR02276 beta_rpt_yvtn 40-res 94.9 0.22 4.7E-06 27.4 6.2 41 228-270 1-41 (42)
448 TIGR03074 PQQ_membr_DH membran 94.7 4.4 9.5E-05 39.0 21.8 111 56-167 195-351 (764)
449 PF10168 Nup88: Nuclear pore c 94.6 2.2 4.8E-05 40.6 15.2 34 310-343 146-182 (717)
450 KOG2247 WD40 repeat-containing 94.6 0.0041 9E-08 53.6 -2.1 144 175-333 36-181 (615)
451 PF14761 HPS3_N: Hermansky-Pud 94.5 1.8 4E-05 33.8 16.2 142 187-340 30-214 (215)
452 PF07569 Hira: TUP1-like enhan 94.5 0.5 1.1E-05 37.6 9.4 62 141-203 21-95 (219)
453 PF14727 PHTB1_N: PTHB1 N-term 94.3 3.5 7.6E-05 36.4 29.7 271 56-343 38-363 (418)
454 PF10214 Rrn6: RNA polymerase 94.3 5.6 0.00012 38.6 26.3 114 174-299 146-277 (765)
455 PF14727 PHTB1_N: PTHB1 N-term 94.0 4 8.7E-05 36.0 25.6 144 99-250 37-203 (418)
456 COG3823 Glutamine cyclotransfe 94.0 2.3 5E-05 33.0 11.6 171 141-328 55-247 (262)
457 COG3292 Predicted periplasmic 93.9 4.8 0.0001 36.4 17.0 271 44-336 163-443 (671)
458 PLN00033 photosystem II stabil 93.9 4.3 9.3E-05 35.7 25.2 146 133-295 242-396 (398)
459 COG5167 VID27 Protein involved 93.7 2.1 4.5E-05 38.0 12.0 135 62-203 487-632 (776)
460 PF12657 TFIIIC_delta: Transcr 93.6 1 2.2E-05 34.4 9.3 30 174-203 86-121 (173)
461 PF07569 Hira: TUP1-like enhan 93.5 0.76 1.7E-05 36.6 8.7 64 95-160 18-95 (219)
462 smart00036 CNH Domain found in 93.5 4.2 9E-05 34.4 22.5 234 98-349 12-279 (302)
463 COG4590 ABC-type uncharacteriz 93.4 0.38 8.3E-06 41.7 7.1 170 125-306 216-394 (733)
464 COG4880 Secreted protein conta 93.2 5.2 0.00011 34.8 15.4 180 110-305 407-599 (603)
465 PF12768 Rax2: Cortical protei 93.2 2.9 6.3E-05 34.7 11.9 90 109-201 16-121 (281)
466 PF12768 Rax2: Cortical protei 92.6 3.9 8.5E-05 33.9 11.8 91 65-158 16-121 (281)
467 KOG4460 Nuclear pore complex, 92.6 5.2 0.00011 35.8 12.8 33 313-345 168-203 (741)
468 PF11635 Med16: Mediator compl 92.6 11 0.00023 36.6 19.4 67 263-335 260-345 (753)
469 KOG4460 Nuclear pore complex, 92.3 4.1 8.8E-05 36.4 11.8 75 89-163 105-201 (741)
470 COG4590 ABC-type uncharacteriz 92.1 1.1 2.5E-05 38.9 8.2 163 83-255 216-390 (733)
471 PF03088 Str_synth: Strictosid 92.0 2.4 5.3E-05 28.0 9.0 41 241-281 35-75 (89)
472 TIGR03548 mutarot_permut cycli 92.0 7.2 0.00016 33.3 17.8 104 98-205 72-196 (323)
473 PF10214 Rrn6: RNA polymerase 92.0 13 0.00028 36.2 21.5 161 85-252 77-277 (765)
474 KOG1900 Nuclear pore complex, 91.7 4.6 0.0001 40.3 12.6 151 177-341 82-273 (1311)
475 PF02333 Phytase: Phytase; In 91.7 8.4 0.00018 33.5 18.9 188 141-342 67-292 (381)
476 PF11715 Nup160: Nucleoporin N 91.6 2.1 4.5E-05 39.7 10.4 73 54-126 157-257 (547)
477 PF10395 Utp8: Utp8 family; I 91.5 12 0.00026 35.0 22.7 166 87-260 129-314 (670)
478 KOG3616 Selective LIM binding 91.5 3.1 6.8E-05 38.8 10.7 91 249-349 324-414 (1636)
479 KOG1898 Splicing factor 3b, su 91.4 15 0.00033 36.0 23.8 79 47-125 541-626 (1205)
480 KOG1896 mRNA cleavage and poly 91.4 16 0.00036 36.4 15.8 181 61-251 1000-1213(1366)
481 KOG1900 Nuclear pore complex, 91.4 6.6 0.00014 39.3 13.3 156 91-252 82-273 (1311)
482 PLN02193 nitrile-specifier pro 91.3 11 0.00024 34.2 17.2 134 66-205 194-353 (470)
483 TIGR02276 beta_rpt_yvtn 40-res 90.8 1.6 3.5E-05 23.7 5.7 31 97-127 1-32 (42)
484 TIGR03548 mutarot_permut cycli 88.9 14 0.0003 31.6 13.3 56 65-121 139-198 (323)
485 PF07676 PD40: WD40-like Beta 88.7 2 4.3E-05 23.1 4.8 30 217-248 7-38 (39)
486 COG1520 FOG: WD40-like repeat 88.5 16 0.00035 31.9 20.4 226 99-338 68-303 (370)
487 PF02333 Phytase: Phytase; In 88.4 16 0.00035 31.8 24.1 193 58-259 71-299 (381)
488 PF07250 Glyoxal_oxid_N: Glyox 88.4 12 0.00025 30.4 10.7 143 154-308 48-207 (243)
489 PF07676 PD40: WD40-like Beta 88.4 2.1 4.6E-05 22.9 4.8 29 309-337 7-38 (39)
490 COG4257 Vgb Streptogramin lyas 88.3 13 0.00028 30.5 19.7 238 87-341 61-306 (353)
491 PF03022 MRJP: Major royal jel 88.1 14 0.00031 30.9 20.3 164 65-230 34-247 (287)
492 PLN02153 epithiospecifier prot 88.1 16 0.00035 31.5 21.5 95 65-163 50-170 (341)
493 PF11715 Nup160: Nucleoporin N 88.0 3.2 6.9E-05 38.5 8.6 40 220-261 216-258 (547)
494 PF10433 MMS1_N: Mono-function 87.6 23 0.0005 32.6 24.7 248 56-320 223-503 (504)
495 TIGR03606 non_repeat_PQQ dehyd 87.5 21 0.00046 32.1 15.2 53 87-139 29-88 (454)
496 COG4257 Vgb Streptogramin lyas 86.8 16 0.00035 30.0 15.3 196 132-341 64-263 (353)
497 COG3823 Glutamine cyclotransfe 86.5 14 0.0003 29.0 15.3 121 36-162 36-160 (262)
498 PF09826 Beta_propel: Beta pro 86.3 27 0.0006 32.1 17.3 181 65-253 304-520 (521)
499 PLN00033 photosystem II stabil 85.8 24 0.00053 31.2 32.2 145 176-337 241-396 (398)
500 PF15525 DUF4652: Domain of un 85.3 15 0.00032 28.2 9.5 66 243-308 88-158 (200)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-53 Score=334.45 Aligned_cols=301 Identities=24% Similarity=0.411 Sum_probs=265.2
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee-ee
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI-RN 124 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~ 124 (364)
+-++.|+|+ .+++++.|.++++||+.+... .+++++|...|.|++|+|||+.||+|+.||.|++||.++|+++ ..
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp--~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~ 195 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP--LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRA 195 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCCCc--ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccc
Confidence 666777774 588888999999999998765 5667799999999999999999999999999999999998765 57
Q ss_pred eecCCCcEEEEEeecC----CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 125 LEGHDKRVATASWNHW----NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
+.+|...|++++|.|- ..++|++++.||.++|||+..+. .+..+.+|..+|+|+.|--+| ++++|+.|++|++|
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw 273 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVW 273 (480)
T ss_pred ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcCCc-eEEecCCCceEEEE
Confidence 8999999999999752 56799999999999999998665 477888999999999998766 99999999999999
Q ss_pred eCCCCCCCcceEEecccccceeEEEEc-----------cCCC------------------------cEEEeecCCCCCeE
Q 040533 201 DHSKMSSSKCLHRFRDHRAAVKALAWC-----------PYQF------------------------NVLASGGGTQDGCI 245 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~------------------------~~~~~~~g~~d~~i 245 (364)
+... +.....+++|...|+.++.+ |.+. ..+++|+ .|.++
T Consensus 274 ~a~d---G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs--Dd~tl 348 (480)
T KOG0271|consen 274 RALD---GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS--DDFTL 348 (480)
T ss_pred Eccc---hhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec--CCceE
Confidence 9665 46688999999999998876 2232 2577766 99999
Q ss_pred EEEECCCC-eEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC
Q 040533 246 KIWNVQKG-TCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL 323 (364)
Q Consensus 246 ~i~d~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~ 323 (364)
.+|+.... +++..+.. ..-|+.+.|||++++++++.- |..|++|+.++|+.+..+++|-+.|+.++|+.|.+
T Consensus 349 flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 349 FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred EEecccccccchhhhhchhhheeeEEECCCccEEEEeec------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 99997654 45555544 466999999999999999854 99999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 324 TVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 324 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+|++||.|.++++|++++.+....+.+|.+.|.++.|||.
T Consensus 423 LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspD 462 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPD 462 (480)
T ss_pred EEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCC
Confidence 9999999999999999999999999999999999999995
No 2
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-51 Score=344.25 Aligned_cols=313 Identities=48% Similarity=0.883 Sum_probs=293.2
Q ss_pred CCCCCCCCCCcEEeeCCCCCCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEE
Q 040533 23 GSPTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTL 102 (364)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 102 (364)
++..+.+++.|++++++|.+.+|||.+.++|+..+.++++.+..|++|+..+++...+..+. .+.|+++.|+++|++|
T Consensus 155 r~~~r~~~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~L 232 (484)
T KOG0305|consen 155 RKLKRKIPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHL 232 (484)
T ss_pred ccccCcccCChhhhccCCcccccHhhhHhhcccCCeEEEEecceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEE
Confidence 35567999999999999999999999999999999999999999999999999987777753 8899999999999999
Q ss_pred EEEecCCcEEEEecCCcceeeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEE
Q 040533 103 AVGYMASKLQLWDAETSKLIRNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKW 181 (364)
Q Consensus 103 ~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~ 181 (364)
|+|..+|.|.|||..+.+.+..+.+ |...|.+++| +...+.+|+.++.|..+|++..+.....+.+|...|..++|
T Consensus 233 avG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW---~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw 309 (484)
T KOG0305|consen 233 AVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAW---NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW 309 (484)
T ss_pred EEeecCCeEEEEehhhccccccccCCcCceeEEEec---cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE
Confidence 9999999999999999999999998 9999999999 68899999999999999999988766668899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 182 SNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 182 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
++|+.++|+|+.|+.+.|||... ..+...+..|.+.|..++|+|....+||+|+|+.|+.|++||..+++.+..+..
T Consensus 310 s~d~~~lASGgnDN~~~Iwd~~~---~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 310 SPDGNQLASGGNDNVVFIWDGLS---PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred CCCCCeeccCCCccceEeccCCC---ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc
Confidence 99999999999999999999743 456888899999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
.++|+.+.|++..+.++++.++. ++.|.||++.+.+++..+.+|...|..++++|||..+++|+.|.++++|++..
T Consensus 387 gsQVcsL~Wsk~~kEi~sthG~s----~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 387 GSQVCSLIWSKKYKELLSTHGYS----ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCceeeEEEcCCCCEEEEecCCC----CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 99999999999999999998876 88999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcc
Q 040533 342 PSGSGD 347 (364)
Q Consensus 342 ~~~~~~ 347 (364)
......
T Consensus 463 ~~~~~~ 468 (484)
T KOG0305|consen 463 ERPKST 468 (484)
T ss_pred CCCccc
Confidence 644433
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.7e-49 Score=314.92 Aligned_cols=266 Identities=22% Similarity=0.403 Sum_probs=249.4
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecC-CCCEEEEeeCCCcEEEEEcccCc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW-NGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
+...+|..+.|++|++.||+|+.+|.++||+..+...+.++.+|...|.++.|+|. ++..+++|+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 56789999999999999999999999999999999999999999999999999996 36799999999999999998665
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
++..+.+|...|..++|+|+|++|++++.|.+-++||+++... +....+|...|.+++|.|+| .++++|| .|.
T Consensus 253 -~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E---lL~QEGHs~~v~~iaf~~DG-SL~~tGG--lD~ 325 (459)
T KOG0272|consen 253 -PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE---LLLQEGHSKGVFSIAFQPDG-SLAATGG--LDS 325 (459)
T ss_pred -chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh---hHhhcccccccceeEecCCC-ceeeccC--ccc
Confidence 4788899999999999999999999999999999999988644 66678999999999999999 7889987 999
Q ss_pred eEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC-C
Q 040533 244 CIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP-D 321 (364)
Q Consensus 244 ~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~ 321 (364)
.-+|||+++++++..+..+ .+|.+++|+|+|..+++|+. |++++|||++..+.+..+.+|.+-|+.+.|+| .
T Consensus 326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~------Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS------DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred hhheeecccCcEEEEecccccceeeEeECCCceEEeecCC------CCcEEEeeecccccceecccccchhhheEecccC
Confidence 9999999999999999876 77999999999999999855 99999999999999999999999999999999 7
Q ss_pred CCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 322 GLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 322 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|.+|+|++.|++++||...+..+++.+.||.+.|.++..+|.
T Consensus 400 g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d 441 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPD 441 (459)
T ss_pred CeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccC
Confidence 889999999999999999999999999999999999999986
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-48 Score=308.20 Aligned_cols=274 Identities=23% Similarity=0.423 Sum_probs=243.0
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc
Q 040533 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV 161 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 161 (364)
.+.+|.++|.|++|+|+|..||+|+.|.++++||+.+..+..+.++|..-|.|++|+| ++..||+|+.||+|++||.++
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECC-CcchhhccccCCeEEEecCCC
Confidence 4569999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CcceeeeeecccCcEEEEEEcC-----CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 162 SNNVTSRINAHTAEVCGLKWSN-----EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
+++....+.+|...|++++|.| ..++||+++.||.++|||+.. ..++..+.+|..+|+|+.|-.+ .++.+
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~---~~~~~~lsgHT~~VTCvrwGG~--gliyS 263 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL---GTCVRTLSGHTASVTCVRWGGE--GLIYS 263 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC---ceEEEEeccCccceEEEEEcCC--ceEEe
Confidence 9999999999999999999987 457999999999999999765 4568999999999999999755 58888
Q ss_pred ecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEc-----------CCcccee-------------------eeccCCc
Q 040533 237 GGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWN-----------RHHKEIL-------------------SGHGFSS 285 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~-----------~~~~~l~-------------------~~~~~~~ 285 (364)
++ .|++|++|+...|.+.+.+..+ ..|+.++.+ |.++..- .+....+
T Consensus 264 gS--~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 264 GS--QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred cC--CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 76 9999999999999999888776 457777766 3333300 0011234
Q ss_pred cCCCCeEEEeeCCC-CceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 286 SGDGQKLCLWKYPH-MTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 286 ~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+++|.++.+|+... .+++..+.+|...|..+.||||++++|++|-|..|++|+-.+++.+.+|.+|-++|+.++||..
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaD 420 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD 420 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccC
Confidence 47799999999754 5588889999999999999999999999999999999999999999999999999999999864
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-48 Score=312.21 Aligned_cols=276 Identities=18% Similarity=0.368 Sum_probs=250.3
Q ss_pred eeecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC--CCEEEEEecCCcEEEEecCCccee
Q 040533 47 YSNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 47 ~~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
.+..+.++.+ .+++++.+|.+++|+..+... +..+.+|...|.++.|+|. +..+|+|+.||++++|++.+...+
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~--~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l 254 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL--LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL 254 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcce--eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch
Confidence 3455556654 588899999999999988854 5566799999999999996 568999999999999999999999
Q ss_pred eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 123 RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
..+.+|...|..++|+| +|++|++++.|.+-++||++++.. .....+|...|.+++|++||.++++|+.|..-+|||+
T Consensus 255 ~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 255 QDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL 332 (459)
T ss_pred hhhhcchhhheeeeecC-CCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence 99999999999999999 999999999999999999998876 5567799999999999999999999999999999999
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcC-Cccceeee
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNR-HHKEILSG 280 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~-~~~~l~~~ 280 (364)
+++. ++..+.+|..+|.+++|+|+| +.+++|+ .|++++|||++..+.+.++..+ +-|+.+.|+| .|.+|+++
T Consensus 333 Rtgr---~im~L~gH~k~I~~V~fsPNG-y~lATgs--~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 333 RTGR---CIMFLAGHIKEILSVAFSPNG-YHLATGS--SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred ccCc---EEEEecccccceeeEeECCCc-eEEeecC--CCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc
Confidence 9864 488999999999999999999 8888876 8999999999999998888766 5689999999 67777766
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
.. |++++||...++.+++.+.+|.+.|.++++++|++++++++.|.++++|.
T Consensus 407 sy------D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 407 SY------DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cc------CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 43 99999999999999999999999999999999999999999999999995
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.8e-45 Score=280.87 Aligned_cols=287 Identities=21% Similarity=0.428 Sum_probs=254.2
Q ss_pred CCcEEeeCCCCCCCcceeecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC
Q 040533 31 QKEARILDAPNLRNDYYSNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA 108 (364)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 108 (364)
....+++.... +. +.+++|+++ ++++++.||.+.|||.-+....+.+.+ ....|..++|+|.|+++|+|+-|
T Consensus 45 ~~~rr~LkGH~--~K--i~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl--~s~WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 45 MRTRRTLKGHL--NK--IYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL--PSSWVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred eeeEEEecccc--cc--eeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--CceeEEEEEECCCCCeEEecCcC
Confidence 34445555432 22 778889886 588899999999999888766555554 47899999999999999999999
Q ss_pred CcEEEEecCCc------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEc
Q 040533 109 SKLQLWDAETS------KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182 (364)
Q Consensus 109 g~i~iw~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 182 (364)
+...||++.+. +..+.+.+|.+.+.++.|.+ ...|++++.|.+..+||+++++. ...+.+|.+.|.+++++
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~-~~~f~GH~gDV~slsl~ 195 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQ-TQVFHGHTGDVMSLSLS 195 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceE-EEEecCCcccEEEEecC
Confidence 99999999855 44567889999999999974 66788999999999999998875 77889999999999999
Q ss_pred C-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 183 N-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 183 ~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
| +++.+++|+-|+..++||+|.+ .+.+.|.+|.+.|+++.|.|+| .-+++|+ .|++.++||++..+.+..+.+
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~---~c~qtF~ghesDINsv~ffP~G-~afatGS--DD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSG---QCVQTFEGHESDINSVRFFPSG-DAFATGS--DDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred CCCCCeEEecccccceeeeeccCc---ceeEeecccccccceEEEccCC-CeeeecC--CCceeEEEeecCCcEEeeecc
Confidence 9 9999999999999999999875 5699999999999999999999 6777765 999999999999999998876
Q ss_pred C---CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 262 K---AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 262 ~---~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
. .+|++++||..|++|++|.. |..+.+||.-.++.+..+.+|++.|+++..+|||.-+++||.|.+++||.
T Consensus 270 ~~~~~gitSv~FS~SGRlLfagy~------d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 270 DSIICGITSVAFSKSGRLLFAGYD------DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CcccCCceeEEEcccccEEEeeec------CCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 5 56999999999999999865 99999999999999999999999999999999999999999999999994
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-45 Score=277.66 Aligned_cols=273 Identities=21% Similarity=0.381 Sum_probs=237.9
Q ss_pred CccEEEEEeCCeEEEEECCCCcee---eeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCc
Q 040533 55 RNNILAIALGLELYLWKQENGEVQ---KLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKR 131 (364)
Q Consensus 55 ~~~~~~~~~~~~i~iw~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 131 (364)
++-++.++.|..+.+|++...... ....+.||+..|..+..++||++.++++.|+++++||+.+++..+.|.+|...
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d 107 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD 107 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc
Confidence 355788889999999998754332 25566799999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCCCCc
Q 040533 132 VATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE--GNLLASGGDDNLVHVWDHSKMSSSK 209 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~ 209 (364)
|.+++|+| +...+++|+.|.+|++|+..........-..+...|.|+.|+|+ ..+|++++.|++|++||+++.+
T Consensus 108 Vlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~--- 183 (315)
T KOG0279|consen 108 VLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ--- 183 (315)
T ss_pred eEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc---
Confidence 99999999 99999999999999999987554322222233789999999997 6899999999999999988754
Q ss_pred ceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCC
Q 040533 210 CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDG 289 (364)
Q Consensus 210 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 289 (364)
....+.+|.+.++.++++||| .+.++|+ .||.+.+||++.++.+..+.+...|.+++|+|+...|+++. +
T Consensus 184 l~~~~~gh~~~v~t~~vSpDG-slcasGg--kdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-------~ 253 (315)
T KOG0279|consen 184 LRTTFIGHSGYVNTVTVSPDG-SLCASGG--KDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-------A 253 (315)
T ss_pred hhhccccccccEEEEEECCCC-CEEecCC--CCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-------C
Confidence 477788999999999999999 7888887 99999999999999999999999999999999999888876 6
Q ss_pred CeEEEeeCCCCceeeeccc----c-----ccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 290 QKLCLWKYPHMTKWGELQH----Q-----TSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 290 ~~i~i~d~~~~~~~~~~~~----~-----~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
..|+|||+.+...+.++.. . .-...+++|++||..|++|-.|+.|++|.+..
T Consensus 254 ~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 254 TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 7799999999888877652 1 22356789999999999999999999999753
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8e-43 Score=260.57 Aligned_cols=287 Identities=17% Similarity=0.317 Sum_probs=243.9
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc--eeeeeecCCCcEEEE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVATA 135 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~ 135 (364)
+++++.|.+|++|...+|.+...+. ...+.|..+.+.|+++.||+++ ...|++||+.++. ++.++.+|.+.|+++
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiq--h~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQ--HPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEe--cCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 6677889999999999999866554 5577899999999999999997 5689999998875 578999999999999
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR 215 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 215 (364)
.|.. +++.+++|++||+++|||++... ......|..+|+++..+|+...|++|..+|.|++||+....... ....
T Consensus 90 gF~~-dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~--~liP 164 (311)
T KOG0315|consen 90 GFQC-DGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH--ELIP 164 (311)
T ss_pred EEee-cCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc--ccCC
Confidence 9999 99999999999999999999754 34455688999999999999999999999999999998753311 1122
Q ss_pred ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe------EEEEEe-cCCCeEEEEEcCCccceeeeccCCccCC
Q 040533 216 DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT------CIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGD 288 (364)
Q Consensus 216 ~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 288 (364)
....+|.++...|+|..+.+.. ..|..++|++-+.. ++.+++ +.+.+..+.+||++++|++++.
T Consensus 165 e~~~~i~sl~v~~dgsml~a~n---nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss------ 235 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSMLAAAN---NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS------ 235 (311)
T ss_pred CCCcceeeEEEcCCCcEEEEec---CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC------
Confidence 3456899999999996665543 68999999997643 334444 3467999999999999998855
Q ss_pred CCeEEEeeCCCC-ceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeec
Q 040533 289 GQKLCLWKYPHM-TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVS 361 (364)
Q Consensus 289 ~~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s 361 (364)
|.+++||+.++. +....+++|...+...+||.||+||++|+.|+.+++|++..++.+..+.+|..+..+++..
T Consensus 236 dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 236 DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999988 6666788999999999999999999999999999999999999999999998888887754
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.8e-42 Score=264.39 Aligned_cols=270 Identities=20% Similarity=0.362 Sum_probs=245.7
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
..+++|.+.|.++.|++|.+++++++.||.+.|||.-+......++-....|..++|+| .++++|+|+-|+...||++.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEecc
Confidence 55679999999999999999999999999999999999988888888888999999999 99999999999999999998
Q ss_pred cC--c---ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 161 VS--N---NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 161 ~~--~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
+. + +..+.+.+|.+.+.++.|-+|+ .|++++.|.+..+||++++ +.+..+.+|.+.|.+++++|...+.++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g---~~~~~f~GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETG---QQTQVFHGHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccc---eEEEEecCCcccEEEEecCCCCCCeEE
Confidence 65 2 3456788999999999998854 7899999999999998875 448999999999999999996668888
Q ss_pred eecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc--ccc
Q 040533 236 SGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ--TSR 312 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~ 312 (364)
+|+ -|+..++||++.+.+++++..+ +.|+++.|.|+|.-+++| ++|++.++||++..+.+..+... ..+
T Consensus 204 Sg~--cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatG------SDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 204 SGG--CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATG------SDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred ecc--cccceeeeeccCcceeEeecccccccceEEEccCCCeeeec------CCCceeEEEeecCCcEEeeeccCcccCC
Confidence 877 8999999999999999999765 779999999999988887 56999999999999988887632 357
Q ss_pred eeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 313 ILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 313 i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|++++||..|++|++|..|.++.+||.-.++....+.+|.+.|.+|..+|.
T Consensus 276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~D 326 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPD 326 (343)
T ss_pred ceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCC
Confidence 999999999999999999999999999999999999999999999999985
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-41 Score=274.84 Aligned_cols=304 Identities=20% Similarity=0.395 Sum_probs=251.1
Q ss_pred eecccCCC--ccEEE-EEeCCeEEEEECCCC--ce------eeeeeec----CCCCCceEEEEcCCCCEEEEEecCCcEE
Q 040533 48 SNMMDWGR--NNILA-IALGLELYLWKQENG--EV------QKLLKVT----GEDDFPTSISWSQDAKTLAVGYMASKLQ 112 (364)
Q Consensus 48 ~~~~~~~~--~~~~~-~~~~~~i~iw~~~~~--~~------~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 112 (364)
+.+.+|+| +.+++ ++.+-..++|++... .. ...+... .....|++++|+.+|..||+|..||.++
T Consensus 181 V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~r 260 (524)
T KOG0273|consen 181 VFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEAR 260 (524)
T ss_pred eEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEE
Confidence 67788999 33555 456778999998741 11 1111111 2246799999999999999999999999
Q ss_pred EEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEe
Q 040533 113 LWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 113 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 192 (364)
||+. .|.++.++..|.++|.++.|+. .+++|++++.|+++.+||..++.. ...+..|..+-..+.|-.+ ..+++++
T Consensus 261 iw~~-~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~-~q~f~~~s~~~lDVdW~~~-~~F~ts~ 336 (524)
T KOG0273|consen 261 IWNK-DGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTV-KQQFEFHSAPALDVDWQSN-DEFATSS 336 (524)
T ss_pred EEec-CchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceE-EEeeeeccCCccceEEecC-ceEeecC
Confidence 9995 5788889999999999999999 999999999999999999987764 6677778888778888754 4789999
Q ss_pred CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEc
Q 040533 193 DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWN 271 (364)
Q Consensus 193 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~ 271 (364)
.|+.|+++.+.. ..++.++.+|.+.|.++.|+|.+ .+|++++ .|++++||++........+..+ ..|..+.|+
T Consensus 337 td~~i~V~kv~~---~~P~~t~~GH~g~V~alk~n~tg-~LLaS~S--dD~TlkiWs~~~~~~~~~l~~Hskei~t~~ws 410 (524)
T KOG0273|consen 337 TDGCIHVCKVGE---DRPVKTFIGHHGEVNALKWNPTG-SLLASCS--DDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWS 410 (524)
T ss_pred CCceEEEEEecC---CCcceeeecccCceEEEEECCCC-ceEEEec--CCCeeEeeecCCCcchhhhhhhccceeeEeec
Confidence 999999999765 35688999999999999999998 6888876 8999999999888888777655 579999999
Q ss_pred CCcccee---eeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcce
Q 040533 272 RHHKEIL---SGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF 348 (364)
Q Consensus 272 ~~~~~l~---~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 348 (364)
|.|...- .+....+++.|+.|++||...+.++..+..|..+|.+++|+|+|+++|+|+.||.|.+|+.+.++..+.+
T Consensus 411 p~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 411 PTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred CCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence 9765310 1111122345999999999999999999999999999999999999999999999999999999998887
Q ss_pred eccCCceeeeeecc
Q 040533 349 VSHLDGLLSLKVSP 362 (364)
Q Consensus 349 ~~~~~~v~~~~~sp 362 (364)
.+ .+.|..|+|+-
T Consensus 491 ~~-~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 491 QG-TGGIFELCWNA 503 (524)
T ss_pred cC-CCeEEEEEEcC
Confidence 65 66799999974
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.5e-40 Score=266.55 Aligned_cols=277 Identities=21% Similarity=0.382 Sum_probs=246.0
Q ss_pred ceeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 46 YYSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 46 ~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
--+++++|+.++ ++++..||.+++|+..... +..+..|.++|.++.|+.+|++|++++.||++.+||..++...+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l---~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL---ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchh---hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 358999999754 6667789999999987654 35566899999999999999999999999999999999999999
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.+..|..+-..+.|- +...+++++.|+.|+++.+....+ ...+.+|.++|.++.|+|.+.+|++++.|++++||...
T Consensus 313 ~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P-~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRP-VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG 389 (524)
T ss_pred eeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCCc-ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecC
Confidence 999898887888996 677899999999999999986664 77788899999999999999999999999999999965
Q ss_pred CCCCCcceEEecccccceeEEEEccCCC--------cEEEeecCCCCCeEEEEECCCCeEEEEE-ecCCCeEEEEEcCCc
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQF--------NVLASGGGTQDGCIKIWNVQKGTCIHSV-DTKAQICGLEWNRHH 274 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~~~~~ 274 (364)
.. .....+.+|...|..+.|+|.++ ..+++++ .|++|++||+..+.++..+ ++..+|.+++|+|+|
T Consensus 390 ~~---~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas--~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g 464 (524)
T KOG0273|consen 390 QS---NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS--FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG 464 (524)
T ss_pred CC---cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee--cCCeEEEEEccCCceeEeeccCCCceEEEEecCCC
Confidence 54 45788889999999999998763 4566665 8999999999999999998 677999999999999
Q ss_pred cceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 275 KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 275 ~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
+++++|.. |+.|.+|+.++++..+.+.+. +.|..++|+.+|.+|..+-.||.+++-|++
T Consensus 465 ~ylAsGs~------dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 465 RYLASGSL------DGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cEEEecCC------CCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999965 999999999999999998765 459999999999999999999999999875
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-40 Score=261.64 Aligned_cols=305 Identities=23% Similarity=0.384 Sum_probs=260.7
Q ss_pred CccccCCCCCCCCCCCcEEeeCCCCCCCcceeecccCCCccEEEE--EeCCeEEEEECCCCceeeeeeecCCCCCceEEE
Q 040533 17 SPRRLLGSPTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAI--ALGLELYLWKQENGEVQKLLKVTGEDDFPTSIS 94 (364)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~ 94 (364)
.|....+.+..++|.+|...--. + ....+..+-++|...+.+ +.|++|++||..+++. ...+.+|.+.+.+++
T Consensus 83 ~pt~~~~~~~~wipRp~l~~~l~-g--~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~ 157 (406)
T KOG0295|consen 83 DPTGSKRTPALWIPRPNLVQKLA-G--HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDIS 157 (406)
T ss_pred CCCcCccChhhcCCCCCchhhhh-c--cccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEE
Confidence 45555555666676655442211 1 222366667788764433 3589999999999998 455669999999999
Q ss_pred EcCCCCEEEEEecCCcEEEEecCC-cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc
Q 040533 95 WSQDAKTLAVGYMASKLQLWDAET-SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT 173 (364)
Q Consensus 95 ~s~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 173 (364)
|+..|++||+++.|-.+++||.++ .++++.+.+|...|.++.|-| .++++++++.|.+|+.|++.++.+ +..+.+|.
T Consensus 158 ~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~c-v~t~~~h~ 235 (406)
T KOG0295|consen 158 FDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYC-VKTFPGHS 235 (406)
T ss_pred EecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEeccccee-EEeccCch
Confidence 999999999999998899999987 577788889999999999999 899999999999999999998876 78899999
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC--------------CcEEEeecC
Q 040533 174 AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ--------------FNVLASGGG 239 (364)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~~~~~~g 239 (364)
..|..+..+.||.++++++.|.+|++|-+.+. ++...++.|..+|.+++|.|.. ..++.+++
T Consensus 236 ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~---~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S- 311 (406)
T KOG0295|consen 236 EWVRMVRVNQDGTIIASCSNDQTLRVWVVATK---QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS- 311 (406)
T ss_pred HhEEEEEecCCeeEEEecCCCceEEEEEeccc---hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec-
Confidence 99999999999999999999999999997764 3466778899999999997742 24666655
Q ss_pred CCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEee
Q 040533 240 TQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQ 318 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 318 (364)
.|++|++||+.++.++.++..+ ..|..++|+|.|+||++. .+|+++++||+++++++..+..|..-++++.|
T Consensus 312 -rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc------aDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 312 -RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSC------ADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF 384 (406)
T ss_pred -ccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEE------ecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence 9999999999999999998765 779999999999999987 45999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEe
Q 040533 319 SPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 319 ~~~~~~l~~~~~dg~i~vw~~ 339 (364)
+.+..++++|+-|.++++|..
T Consensus 385 h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 385 HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCCceEEeccccceeeeeec
Confidence 999999999999999999974
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.4e-41 Score=286.92 Aligned_cols=245 Identities=23% Similarity=0.408 Sum_probs=221.6
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc-------------------------------ceeeeeecCCCcEE
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS-------------------------------KLIRNLEGHDKRVA 133 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-------------------------------~~~~~~~~~~~~v~ 133 (364)
.....++|..|++|+.+||.|..|..|++|.+... ...+++.+|.++|.
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence 33556899999999999999999999999988631 12344678999999
Q ss_pred EEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEE
Q 040533 134 TASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR 213 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 213 (364)
.+.|+| +.++|+++++|+++++|.+.+... ...+.+|..+|..+.|+|-|.++|+++.|++.++|.... ..+++.
T Consensus 456 g~sFsP-d~rfLlScSED~svRLWsl~t~s~-~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~---~~PlRi 530 (707)
T KOG0263|consen 456 GCSFSP-DRRFLLSCSEDSSVRLWSLDTWSC-LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH---NKPLRI 530 (707)
T ss_pred eeeecc-cccceeeccCCcceeeeeccccee-EEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc---CCchhh
Confidence 999999 999999999999999999998776 666779999999999999999999999999999999665 466888
Q ss_pred ecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeE
Q 040533 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKL 292 (364)
Q Consensus 214 ~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i 292 (364)
+.+|.+.|.|+.|+|+. .++++|+ .|.++++||..+|..++.+.++ ++|.+++|||+|++|++|. +|+.|
T Consensus 531 faghlsDV~cv~FHPNs-~Y~aTGS--sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~------ed~~I 601 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNS-NYVATGS--SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD------EDGLI 601 (707)
T ss_pred hcccccccceEEECCcc-cccccCC--CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc------cCCcE
Confidence 99999999999999998 6777765 9999999999999999999765 8899999999999999985 49999
Q ss_pred EEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 293 CLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 293 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
.+||+.+++.+..+.+|.+.|.++.|+.+|..||+|+.|++|++||+....
T Consensus 602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 999999999999999999999999999999999999999999999987543
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.6e-42 Score=272.82 Aligned_cols=283 Identities=20% Similarity=0.430 Sum_probs=242.2
Q ss_pred CCcceeecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc
Q 040533 43 RNDYYSNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 43 ~~~~~~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 120 (364)
.....++.+.|.|+ ++++++..|.+.+|+..+-.... .+..|...|.++.|++++.++++|+.+|.|++|+..-.
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEt--ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn- 170 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFET--ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN- 170 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHH--HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-
Confidence 33445788999996 48899999999999985544332 24489999999999999999999999999999997643
Q ss_pred eeeeeecC-CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040533 121 LIRNLEGH-DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199 (364)
Q Consensus 121 ~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 199 (364)
.++.+.+| ...|++++|+| ++..|++++.||+|+|||.....+ ...+.+|.-.|.+++|+|...++++++.|..|++
T Consensus 171 nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKl 248 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL 248 (464)
T ss_pred hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCccceeEEccCCceeEe
Confidence 44455554 49999999999 999999999999999999986664 5567899999999999999999999999999999
Q ss_pred EeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCcccee
Q 040533 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEIL 278 (364)
Q Consensus 200 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~ 278 (364)
||.+++ .++.++.+|...|..+.|+|++ .+|++++ .|..++++|+++.+.++.+. +...+.++.|+|-..-|+
T Consensus 249 WDprSg---~cl~tlh~HKntVl~~~f~~n~-N~Llt~s--kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 249 WDPRSG---SCLATLHGHKNTVLAVKFNPNG-NWLLTGS--KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLF 322 (464)
T ss_pred ecCCCc---chhhhhhhccceEEEEEEcCCC-CeeEEcc--CCceEEEEehhHhHHHHHhhcchhhheeeccccccccce
Confidence 997764 5699999999999999999999 6777766 99999999999888888887 457799999999877776
Q ss_pred eeccCCccCCCCeEEEeeCCCCceeeecc-ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 279 SGHGFSSSGDGQKLCLWKYPHMTKWGELQ-HQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
+.. +.||.|..|.+...+++..+. +|...|++++|+|-|.+|++|+.|.++++|.-..
T Consensus 323 tsg-----g~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 323 TSG-----GSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eec-----cCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 543 459999999999777776664 6999999999999999999999999999997543
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.4e-42 Score=272.51 Aligned_cols=262 Identities=21% Similarity=0.431 Sum_probs=231.3
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 166 (364)
+..|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|+.+|+++.|++ ++.++++|+.+|.|++|+..... +
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmnn--V 172 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMNN--V 172 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchhh--h
Confidence 45789999999999999999999999999865555556778999999999999 99999999999999999987544 4
Q ss_pred eeeeccc-CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeE
Q 040533 167 SRINAHT-AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245 (364)
Q Consensus 167 ~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 245 (364)
..+..|. ..|.+++|+|+...++++++||+|+|||...... ...+.+|.-.|.++.|+|.. .++++++ .|..|
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke---e~vL~GHgwdVksvdWHP~k-gLiasgs--kDnlV 246 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE---ERVLRGHGWDVKSVDWHPTK-GLIASGS--KDNLV 246 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch---hheeccCCCCcceeccCCcc-ceeEEcc--CCcee
Confidence 4455554 8999999999999999999999999999877544 55668999999999999986 7888876 89999
Q ss_pred EEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC-CCC
Q 040533 246 KIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP-DGL 323 (364)
Q Consensus 246 ~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~ 323 (364)
++||.+++.++.++..+ ..|..+.|+|++++|++++ .|..++++|+++.+.+..+++|...++++.|+| ...
T Consensus 247 KlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s------kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 247 KLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS------KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNES 320 (464)
T ss_pred EeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc------CCceEEEEehhHhHHHHHhhcchhhheeecccccccc
Confidence 99999999999988654 6799999999999999984 499999999999999999999999999999999 456
Q ss_pred EEEEEeCCCcEEEEEeeCCCCCccee-ccCCceeeeeeccC
Q 040533 324 TVVSAAADETLRFWEAFGPSGSGDFV-SHLDGLLSLKVSPI 363 (364)
Q Consensus 324 ~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~sp~ 363 (364)
+|.+|+.||.|..|.+...+++..+. .|...|++++|+|+
T Consensus 321 lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPl 361 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPL 361 (464)
T ss_pred ceeeccCCCceEEEeccccccccCCCcccccceeeeecccc
Confidence 88999999999999999666655554 89999999999996
No 16
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1e-39 Score=256.54 Aligned_cols=283 Identities=21% Similarity=0.314 Sum_probs=235.8
Q ss_pred CCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 42 LRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+....|..++..+.+-.++++.|..-.+|+..+++. ..++.+|++.|+++.||.+|.+||+|+.+|.|+||+..++..
T Consensus 63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~--~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~ 140 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF--AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE 140 (399)
T ss_pred cCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc--eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce
Confidence 344544555544222355667889999999999984 566779999999999999999999999999999999999998
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
...+...-..+.-+.|+| .+.+|+.|+.||.+.+|.+.++. ..+.+.+|+.++++-.|.|+|+.++++..||+|++||
T Consensus 141 ~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 141 QWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN 218 (399)
T ss_pred EEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcc-eeeEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence 888876667888999999 99999999999999999998764 5788899999999999999999999999999999999
Q ss_pred CCCCCCCcceEEec---------------------------------------------------ccccceeEEEEccCC
Q 040533 202 HSKMSSSKCLHRFR---------------------------------------------------DHRAAVKALAWCPYQ 230 (364)
Q Consensus 202 ~~~~~~~~~~~~~~---------------------------------------------------~~~~~v~~~~~~~~~ 230 (364)
..+... +..+. .+...+.++.+.|..
T Consensus 219 ~ktg~p---~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s 295 (399)
T KOG0296|consen 219 PKTGQP---LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS 295 (399)
T ss_pred cCCCce---eEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence 876432 22222 111222333333332
Q ss_pred C--cEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc
Q 040533 231 F--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 231 ~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
. -++++| +.||+|.|||+...+..+...+...|..+.|-+ ..+|+++.. +|.|+.||.++|+++..+.+
T Consensus 296 s~lpL~A~G--~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~------~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 296 SKLPLAACG--SVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACA------NGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred cccchhhcc--cccceEEEEecccchhheeccCCCceEEEEEcC-cchheeecc------CceEEeeeccccceEEEEec
Confidence 2 244554 499999999999999999999999999999999 778887755 99999999999999999999
Q ss_pred cccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 309 QTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
|...|.+++++|++++++|+|.|++.+||++.
T Consensus 367 H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999999999864
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.4e-41 Score=263.15 Aligned_cols=276 Identities=20% Similarity=0.310 Sum_probs=245.2
Q ss_pred eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
...+.+|..+|+.+-|+|+-..++++++|++|++||..+++..+.+++|...+..++|+. .|.+|++++.|-.+.+||.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEec-CccEEEecCCccchhheeH
Confidence 344558999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
.+.....+...+|+..|.+++|-|.|.++++++.|.+|+.|++.++ .++.++.+|...|..+..+.|| .++++++
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg---~cv~t~~~h~ewvr~v~v~~DG-ti~As~s- 254 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG---YCVKTFPGHSEWVRMVRVNQDG-TIIASCS- 254 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc---eeEEeccCchHhEEEEEecCCe-eEEEecC-
Confidence 8765567778899999999999999999999999999999998875 5599999999999999999998 7888876
Q ss_pred CCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccce----eeec-----cCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 240 TQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEI----LSGH-----GFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l----~~~~-----~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
.|.++++|-+.++++...+. ++.++.+++|.|...+- +++. ....++.|++|++||+.++.++.++.+|
T Consensus 255 -~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh 333 (406)
T KOG0295|consen 255 -NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH 333 (406)
T ss_pred -CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc
Confidence 99999999999997776664 44678888888753321 1110 1123466999999999999999999999
Q ss_pred ccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 310 TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 310 ~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
.+.|..++|+|.|+||+++.+|+++++||+++.+.++.+..|..-|+++.|.-
T Consensus 334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~ 386 (406)
T KOG0295|consen 334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK 386 (406)
T ss_pred cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC
Confidence 99999999999999999999999999999999999999999999999999864
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-39 Score=244.71 Aligned_cols=269 Identities=18% Similarity=0.295 Sum_probs=226.5
Q ss_pred eeeeecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecC-----CcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC
Q 040533 79 KLLKVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAE-----TSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK 152 (364)
Q Consensus 79 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 152 (364)
..-.+++|.+.|+.++..+. .+.+++++.|..+.+|++. .|..++.+.+|...|..+..++ ++++.++++.|+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~ 85 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDG 85 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEeccccc
Confidence 34567799999999999886 5688999999999999975 3567889999999999999999 999999999999
Q ss_pred cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc--ccceeEEEEccCC
Q 040533 153 SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH--RAAVKALAWCPYQ 230 (364)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~ 230 (364)
++++||+.+++ ....+.+|...|.+++|++|++.+++|+.|.+|++|++... +..+...+ .+.|.++.|+|..
T Consensus 86 ~lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~----ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 86 TLRLWDLATGE-STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV----CKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred eEEEEEecCCc-EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc----EEEEEecCCCcCcEEEEEEcCCC
Confidence 99999999885 47888999999999999999999999999999999997642 34444333 7899999999985
Q ss_pred -CcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc
Q 040533 231 -FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 231 -~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
+-++++++ .|++|++||+++.+....+..+ +.++.+++||||...++| +.||.+.+||++.++.+..+.
T Consensus 161 ~~p~Ivs~s--~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG------gkdg~~~LwdL~~~k~lysl~- 231 (315)
T KOG0279|consen 161 SNPIIVSAS--WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG------GKDGEAMLWDLNEGKNLYSLE- 231 (315)
T ss_pred CCcEEEEcc--CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC------CCCceEEEEEccCCceeEecc-
Confidence 45677766 9999999999999888877654 679999999999999987 559999999999999988775
Q ss_pred cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee----cc-----CCceeeeeeccC
Q 040533 309 QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV----SH-----LDGLLSLKVSPI 363 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~----~~-----~~~v~~~~~sp~ 363 (364)
|...|.+++|+|+.-.|+.+. +..|+|||+.++..+..+. +. .-...+++||+.
T Consensus 232 a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~d 294 (315)
T KOG0279|consen 232 AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSAD 294 (315)
T ss_pred CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCC
Confidence 678999999999986666554 4569999999988876654 21 122457788753
No 19
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-38 Score=261.28 Aligned_cols=303 Identities=19% Similarity=0.296 Sum_probs=245.8
Q ss_pred eeecccCCCc---cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 47 YSNMMDWGRN---NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 47 ~~~~~~~~~~---~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
.++++++-|. ++++++.|+.|.+|+-..-+. ...+..|...|.|+.|+|||.++|+++.||+|.+||-.+++.+.
T Consensus 149 ~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF--k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg 226 (603)
T KOG0318|consen 149 RINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF--KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVG 226 (603)
T ss_pred eEeeeeccCCCceEEEeccCCCeEEEeeCCCeee--eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEE
Confidence 3566777664 478888999999998655444 34455899999999999999999999999999999999999999
Q ss_pred eee---cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc-------------------------------------
Q 040533 124 NLE---GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN------------------------------------- 163 (364)
Q Consensus 124 ~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------------------------------------- 163 (364)
.+. +|.+.|.+++|+| ++..+++++.|.++++||+.+..
T Consensus 227 ~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~l 305 (603)
T KOG0318|consen 227 ELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYL 305 (603)
T ss_pred EecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEe
Confidence 998 8999999999999 99999999999999999987543
Q ss_pred -----ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcc--------e-------------------
Q 040533 164 -----NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC--------L------------------- 211 (364)
Q Consensus 164 -----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--------~------------------- 211 (364)
.+...+.+|...|+++..+|++++|++|+.||.|.-||...+...+. +
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~ 385 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT 385 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCe
Confidence 12334578999999999999999999999999999999765321100 0
Q ss_pred -------------------------------------------EEeccc--------ccceeEEEEccCCCcEEEeecCC
Q 040533 212 -------------------------------------------HRFRDH--------RAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 212 -------------------------------------------~~~~~~--------~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
..++.+ .-...+++++|++ ..++.|+
T Consensus 386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG-- 462 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGG-- 462 (603)
T ss_pred EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC-CEEEEec--
Confidence 000000 1124567788887 5566666
Q ss_pred CCCeEEEEECCCCeE---EEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeee-ccccccceeEE
Q 040533 241 QDGCIKIWNVQKGTC---IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE-LQHQTSRILEL 316 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~i 316 (364)
.|+.|++|.+..+.. ....++.++++.+++||++.+|+++.. .+.+.+||..+.+.... +.-|...|.++
T Consensus 463 ~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da------~rkvv~yd~~s~~~~~~~w~FHtakI~~~ 536 (603)
T KOG0318|consen 463 QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA------SRKVVLYDVASREVKTNRWAFHTAKINCV 536 (603)
T ss_pred ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc------CCcEEEEEcccCceecceeeeeeeeEEEE
Confidence 999999999987553 344567899999999999999999966 89999999998877433 34599999999
Q ss_pred eecCCCCEEEEEeCCCcEEEEEeeCCCCCccee-ccCCceeeeeec
Q 040533 317 SQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV-SHLDGLLSLKVS 361 (364)
Q Consensus 317 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~s 361 (364)
+|+|+..++|+|+.|-.|.||+++.+......+ .|...|+.|.|-
T Consensus 537 aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl 582 (603)
T KOG0318|consen 537 AWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL 582 (603)
T ss_pred EeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe
Confidence 999999999999999999999999887654443 688889999984
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-38 Score=272.55 Aligned_cols=288 Identities=17% Similarity=0.352 Sum_probs=243.6
Q ss_pred eeecccCCC-ccEEEEEeC--CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 47 YSNMMDWGR-NNILAIALG--LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 47 ~~~~~~~~~-~~~~~~~~~--~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
.+..++|+. +..+|.++. |.+.||+.++... ++..++|...+++++++|||+++|+|++||+|+|||..++-+..
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v 386 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV 386 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccce--eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE
Confidence 345566664 345555554 5999999988765 45556999999999999999999999999999999999999999
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCC-eEEEEeC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDN-LVHVWDH 202 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~ 202 (364)
++..|...|+.+.|+. .++.+++.+-||+|+.||+..................|++..|.|.+++.|+.|. .|.+|++
T Consensus 387 TFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~ 465 (893)
T KOG0291|consen 387 TFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSV 465 (893)
T ss_pred EeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEe
Confidence 9999999999999999 9999999999999999999877764443334445678999999999999998876 6999998
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEecCCCeEEEEEcCCccceeeec
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
.++ +.+..+.+|.++|.+++|+|.+ .++++++ .|.+|++||+-.. ..+.+++....+..++|.|+|+.++++.
T Consensus 466 qTG---qllDiLsGHEgPVs~l~f~~~~-~~LaS~S--WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 466 QTG---QLLDILSGHEGPVSGLSFSPDG-SLLASGS--WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVAT 539 (893)
T ss_pred ecC---eeeehhcCCCCcceeeEEcccc-CeEEecc--ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEE
Confidence 775 5588899999999999999999 5888876 9999999998653 4667788889999999999999999987
Q ss_pred cCCccCCCCeEEEeeCCCCceeeeccc--------------------cccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQH--------------------QTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~~--------------------~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
. ||.|.+||...+..+..+.+ .....+.+++++||..+++|+..+.|++|++.+
T Consensus 540 l------dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 540 L------DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred e------cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 6 99999999987666544331 235689999999999999999999999999999
Q ss_pred CCCCccee
Q 040533 342 PSGSGDFV 349 (364)
Q Consensus 342 ~~~~~~~~ 349 (364)
+-.++.+.
T Consensus 614 ~vllkkfq 621 (893)
T KOG0291|consen 614 GVLLKKFQ 621 (893)
T ss_pred hheeeeEE
Confidence 87776554
No 21
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-39 Score=238.99 Aligned_cols=269 Identities=17% Similarity=0.282 Sum_probs=241.3
Q ss_pred eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
...+..++++|..+.|+-||+|.++++.|.+|++|+...+.+++++.+|...|..++.+. +...|++|+.|..+.+||+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEc
Confidence 344568899999999999999999999999999999999999999999999999999998 8899999999999999999
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
.+++. .+.+.+|.+.|+.+.|+.+...+++|+.|..+++||.+... .++++.+......|.++..+. ..+++|+
T Consensus 89 ~TGkv-~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s-~ePiQildea~D~V~Si~v~~---heIvaGS- 162 (307)
T KOG0316|consen 89 NTGKV-DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS-FEPIQILDEAKDGVSSIDVAE---HEIVAGS- 162 (307)
T ss_pred ccCee-eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC-CCccchhhhhcCceeEEEecc---cEEEeec-
Confidence 98885 78899999999999999999999999999999999999754 578888888889999999875 4566654
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccce--eEEe
Q 040533 240 TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI--LELS 317 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--~~i~ 317 (364)
.||+++.||++.|+....+ ...+|+++.|+++++..+++.. ++.+++.|-.+++.+..+++|.+.- ...+
T Consensus 163 -~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l------~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 163 -VDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSL------DSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred -cCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeec------cceeeecccchhHHHHHhcccccceeeeeee
Confidence 9999999999999765443 4578999999999999999865 9999999999999999999997654 3556
Q ss_pred ecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCc-eeeeeeccC
Q 040533 318 QSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDG-LLSLKVSPI 363 (364)
Q Consensus 318 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-v~~~~~sp~ 363 (364)
++.....+++|++||.|++||+.....+..+..+... |.+++++|.
T Consensus 235 l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPT 281 (307)
T ss_pred ecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccC
Confidence 7777789999999999999999999999888888877 899999986
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.7e-38 Score=237.40 Aligned_cols=279 Identities=21% Similarity=0.394 Sum_probs=227.6
Q ss_pred eeecccCCCcc---EEEEEeCCeEEEEECCCCceeeee--eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc--
Q 040533 47 YSNMMDWGRNN---ILAIALGLELYLWKQENGEVQKLL--KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS-- 119 (364)
Q Consensus 47 ~~~~~~~~~~~---~~~~~~~~~i~iw~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-- 119 (364)
.+-.++|+|.. +.+++.|+.|++|+...+...... .-.+|+..|.+++|+|.|++||+|+.|.++.||.-..+
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF 95 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce
Confidence 37778999973 555678899999998853321111 12389999999999999999999999999999986644
Q ss_pred ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc--ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeE
Q 040533 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN--NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLV 197 (364)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 197 (364)
+++..+++|...|.+++|++ +|++||++++|+.|.+|.+.... .....++.|...|..+.|+|...+|++++.|.+|
T Consensus 96 ecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTI 174 (312)
T KOG0645|consen 96 ECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTI 174 (312)
T ss_pred eEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeE
Confidence 67889999999999999999 99999999999999999988544 3466788999999999999988899999999999
Q ss_pred EEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccce
Q 040533 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEI 277 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l 277 (364)
++|+-.......++.++.+|...|.+++|+|.| .-+++++ .|++++||-..+.- ...+..++..+.|. ...+
T Consensus 175 k~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~s--dD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~I 246 (312)
T KOG0645|consen 175 KVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCS--DDGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVI 246 (312)
T ss_pred EEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEec--CCcceEeeeeccCc---chhcccceEeeeec--ccce
Confidence 999877566678899999999999999999999 4555655 89999999866321 11234678889998 4556
Q ss_pred eeeccCCccCCCCeEEEeeCCCC------ceee-eccccccceeEEeecCC-CCEEEEEeCCCcEEEEEee
Q 040533 278 LSGHGFSSSGDGQKLCLWKYPHM------TKWG-ELQHQTSRILELSQSPD-GLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~~~------~~~~-~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~vw~~~ 340 (364)
+++.+ |+.|++|.-... +.+. .-..|...|++++|+|. ..+|++|+.||.|++|.+.
T Consensus 247 aS~gg------D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 247 ASGGG------DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EeccC------CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 66644 999999976542 1122 23468889999999994 6799999999999999875
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-38 Score=278.35 Aligned_cols=265 Identities=25% Similarity=0.498 Sum_probs=237.3
Q ss_pred CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc--eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 86 EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
+...|.++.|+++|+.+++++.++.+++|+...++ ..+.+.+|...|..++|+| ++.++++++.|++|++||+....
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-CCcEEEEecCCceEEEeeccCCC
Confidence 37889999999999999999999999999998777 7777889999999999999 99999999999999999996665
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
..++.+.+|...|++++|+|+++++++|+.|++|++||+++ .+++..+.+|.+.|.+++|++++ .++++++ .|+
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~---~~~~~~l~~hs~~is~~~f~~d~-~~l~s~s--~d~ 310 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT---GECVRKLKGHSDGISGLAFSPDG-NLLVSAS--YDG 310 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC---CeEEEeeeccCCceEEEEECCCC-CEEEEcC--CCc
Confidence 66888999999999999999999999999999999999887 46699999999999999999999 4555555 899
Q ss_pred eEEEEECCCCe--EEEEEecC--C-CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccc---eeE
Q 040533 244 CIKIWNVQKGT--CIHSVDTK--A-QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSR---ILE 315 (364)
Q Consensus 244 ~i~i~d~~~~~--~~~~~~~~--~-~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~---i~~ 315 (364)
.|++||+.++. +...+... . +++.+.|+|++.+++++.. |+.+++||+..+..+..+.+|... +.+
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~------d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~ 384 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL------DRTLKLWDLRSGKSVGTYTGHSNLVRCIFS 384 (456)
T ss_pred cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC------CCeEEEEEccCCcceeeecccCCcceeEec
Confidence 99999999998 45555432 2 5899999999999999865 999999999999999999988764 445
Q ss_pred EeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceecc-CCceeeeeeccC
Q 040533 316 LSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSH-LDGLLSLKVSPI 363 (364)
Q Consensus 316 i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~v~~~~~sp~ 363 (364)
...++.+.++++|+.|+.|++|++.++..+..+.+| ...+..+.++|.
T Consensus 385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPT 433 (456)
T ss_pred ccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCC
Confidence 566789999999999999999999999999999999 888999998874
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.5e-38 Score=235.24 Aligned_cols=262 Identities=16% Similarity=0.238 Sum_probs=227.6
Q ss_pred eeecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 47 YSNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 47 ~~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
.++.+...|+ ..+|++....|++||+.++...++.++.+|...|+++.|..+|+++++|++||+++|||++...+.+.+
T Consensus 42 qVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~ 121 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY 121 (311)
T ss_pred ceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc
Confidence 4888888886 478888899999999999998889999999999999999999999999999999999999997776666
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
+ |..+|+++..+| +...|++|..+|.|++||+................|.++...|||.+++.+...|+.++|++...
T Consensus 122 ~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~ 199 (311)
T KOG0315|consen 122 Q-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH 199 (311)
T ss_pred c-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCC
Confidence 6 789999999999 99999999999999999998776545555556678999999999999999999999999998753
Q ss_pred C---CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEecC-CCeEEEEEcCCccceeee
Q 040533 206 S---SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDTK-AQICGLEWNRHHKEILSG 280 (364)
Q Consensus 206 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~-~~v~~~~~~~~~~~l~~~ 280 (364)
. ...++.+++.|++.+..+.++|+++++.+++ .|.+++||+..+. +....++.+ ..+...+||.+|+||+++
T Consensus 200 ~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s---sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 200 QTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS---SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTA 276 (311)
T ss_pred CccccceEhhheecccceEEEEEECCCCcEEEeec---CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEec
Confidence 2 2356778889999999999999996555544 6999999999987 444445544 579999999999999998
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeec
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQS 319 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 319 (364)
.. |+..++|++..++.+....+|.....+++..
T Consensus 277 ss------d~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 277 SS------DHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CC------CCceeecccccCceeeecCCcccccEEEEee
Confidence 54 9999999999999999999998887777653
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-38 Score=249.80 Aligned_cols=263 Identities=21% Similarity=0.361 Sum_probs=235.1
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
+.+|.+.|.|+++.|..+++++|+.|++|.|||+.+|++..++.+|...|..+++++ -..++++++.|+.|+.||++..
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEechhh
Confidence 458999999999999999999999999999999999999999999999999999999 8899999999999999999966
Q ss_pred cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC
Q 040533 163 NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 242 (364)
+ +++.+.+|-..|.|++.+|.-..|++|+.|.++++||+++... +..+.+|..+|.++.+.|.++.++. |+.|
T Consensus 226 k-vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~---V~~l~GH~~~V~~V~~~~~dpqvit---~S~D 298 (460)
T KOG0285|consen 226 K-VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS---VHVLSGHTNPVASVMCQPTDPQVIT---GSHD 298 (460)
T ss_pred h-hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce---EEEecCCCCcceeEEeecCCCceEE---ecCC
Confidence 5 5888899999999999999888999999999999999998654 8999999999999999998877665 3489
Q ss_pred CeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCC
Q 040533 243 GCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 243 ~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
++|++||++.|+...++.++ ..+.+++.+|....++++. ...|+-|++..+..+..+.+|...|.+++.+.|
T Consensus 299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-------~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD 371 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-------PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSD 371 (460)
T ss_pred ceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-------CccceeccCCccchhhccccccceeeeeeeccC
Confidence 99999999999988887665 6699999999999988875 678999999999999999999999999999888
Q ss_pred CCEEEEEeCCCcEEEEEeeCCCCCccee--------ccCCceeeeeec
Q 040533 322 GLTVVSAAADETLRFWEAFGPSGSGDFV--------SHLDGLLSLKVS 361 (364)
Q Consensus 322 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~--------~~~~~v~~~~~s 361 (364)
| ++++|+++|.+.+||.+++-..+... ....+|.+.+|.
T Consensus 372 ~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD 418 (460)
T KOG0285|consen 372 G-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD 418 (460)
T ss_pred c-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence 7 88999999999999999987655442 124456666664
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-37 Score=263.38 Aligned_cols=295 Identities=21% Similarity=0.409 Sum_probs=253.6
Q ss_pred ccEEEEEeCCeEEEEECCC-----------------------Cce-------e--eeeeecCCCCCceEEEEcCCCCEEE
Q 040533 56 NNILAIALGLELYLWKQEN-----------------------GEV-------Q--KLLKVTGEDDFPTSISWSQDAKTLA 103 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~-----------------------~~~-------~--~~~~~~~~~~~v~~~~~s~~~~~l~ 103 (364)
..+++++.||.+.+|.... ++. . ...-+......|++.+|++..+.||
T Consensus 202 ~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lv 281 (893)
T KOG0291|consen 202 LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLV 281 (893)
T ss_pred ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEE
Confidence 4589999999999998761 110 0 0111223347899999999999999
Q ss_pred EEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC-CcEEEEEcccCcceeeeeecccCcEEEEEEc
Q 040533 104 VGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD-KSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182 (364)
Q Consensus 104 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 182 (364)
+|-.+|...+|.+..-.+++.+.-...+|..++|+. .|+.|+.|+.. |.+.+|++.+.. .+...++|...+++++++
T Consensus 282 vgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEs-YVlKQQgH~~~i~~l~YS 359 (893)
T KOG0291|consen 282 VGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSES-YVLKQQGHSDRITSLAYS 359 (893)
T ss_pred EEecCCeeEEEecCCceEEEEeecccceeeEEEecc-cCCEEEEcCCccceEEEEEeeccc-eeeeccccccceeeEEEC
Confidence 999999999999999999999998889999999998 89999988754 899999998766 466678999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC
Q 040533 183 NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK 262 (364)
Q Consensus 183 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 262 (364)
|||+++++|++||.|++||... +-++.++..|++.|+.+.|+..+. .+++.+ .||+|+.||+...+..+++..+
T Consensus 360 pDgq~iaTG~eDgKVKvWn~~S---gfC~vTFteHts~Vt~v~f~~~g~-~llssS--LDGtVRAwDlkRYrNfRTft~P 433 (893)
T KOG0291|consen 360 PDGQLIATGAEDGKVKVWNTQS---GFCFVTFTEHTSGVTAVQFTARGN-VLLSSS--LDGTVRAWDLKRYRNFRTFTSP 433 (893)
T ss_pred CCCcEEEeccCCCcEEEEeccC---ceEEEEeccCCCceEEEEEEecCC-EEEEee--cCCeEEeeeecccceeeeecCC
Confidence 9999999999999999999665 467999999999999999999985 555554 8999999999999999999876
Q ss_pred CC--eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 263 AQ--ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 263 ~~--v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
.+ ..+++..|.|..+.+|.. +.-.|.+|++++|+.+..+.+|+++|.+++|+|+|..|+++|.|.+|++||+.
T Consensus 434 ~p~QfscvavD~sGelV~AG~~-----d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQ-----DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred CceeeeEEEEcCCCCEEEeecc-----ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 55 678899999999988853 34579999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeccCCceeeeeeccC
Q 040533 341 GPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 341 ~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.......-..+...+++++|+|.
T Consensus 509 ~s~~~vEtl~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 509 SSSGTVETLEIRSDVLAVSFRPD 531 (893)
T ss_pred ccCceeeeEeeccceeEEEEcCC
Confidence 87655554567788999999985
No 27
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1e-37 Score=239.36 Aligned_cols=283 Identities=18% Similarity=0.340 Sum_probs=238.6
Q ss_pred CCCCCCcceeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec
Q 040533 39 APNLRNDYYSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA 116 (364)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 116 (364)
.+.+..++ ..+.|+|++ +++++.|..|.+|+... .+.....+++|.+.|..+.|.+|++.+++++.|.+|+.||.
T Consensus 43 l~gh~geI--~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 43 LPGHKGEI--YTIKFHPDGSCFASGGSDRAIVLWNVYG-DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred cCCCcceE--EEEEECCCCCeEeecCCcceEEEEeccc-cccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 34555554 445566654 77888999999999654 34455667799999999999999999999999999999999
Q ss_pred CCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCe
Q 040533 117 ETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNL 196 (364)
Q Consensus 117 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 196 (364)
++|+.++.+++|..-|+++.-+..+..++.+++.||++++||+++... ++.+ ....+++++.|..++..+.+|+-|+.
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTF-ENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhcc-ccceeEEEEEecccccceeeccccCc
Confidence 999999999999999999985544556888999999999999997764 3333 34567999999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC----eEEEEEecC-----CCeEE
Q 040533 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG----TCIHSVDTK-----AQICG 267 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~~~-----~~v~~ 267 (364)
|++||++... ....+.+|.++|+.+..+|+|.+++.- +.|.++++||++-. +++..+..+ .....
T Consensus 198 ikvWd~r~~d---~~~~lsGh~DtIt~lsls~~gs~llsn---sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 198 IKVWDLRKND---GLYTLSGHADTITGLSLSRYGSFLLSN---SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred eeeeccccCc---ceEEeecccCceeeEEeccCCCccccc---cccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 9999988754 489999999999999999999766653 38999999999753 445555443 34677
Q ss_pred EEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 268 LEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 268 ~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
.+|+|++..+.+|.. |..+++||......+..+.+|.+.|.+++|+|...+|.+++.|.+|++=+
T Consensus 272 cswsp~~~~i~ags~------dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 272 CSWSPNGTKITAGSA------DRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eeccCCCCccccccc------cceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 899999999988865 99999999999999999999999999999999999999999999998743
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.3e-37 Score=256.30 Aligned_cols=276 Identities=26% Similarity=0.487 Sum_probs=238.8
Q ss_pred eeecccCCCc-c-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRN-N-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~-~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+++ . +++++.++.+.+|+..+++.. ..+..|...+..+.|+|+++++++++.+|.|++|++.+++....
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 88 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT 88 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE--EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE
Confidence 3778888885 3 555666999999999887643 33457888899999999999999999999999999999888888
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+..|...+.++.|+| ++.++++++.+|.+.+||+++.+. ...+..|...+.+++|+|++.++++++.++.|++||++.
T Consensus 89 ~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 89 LTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred EeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEE-EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 888999999999999 788888888899999999986554 556668889999999999988998888899999999875
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEE-ecCCCeEEEEEcCCccceeeeccC
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV-DTKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
. +.+..+..|...+.++.|+|++..+++++ .++.+++||+++++.+..+ .+...+.++.|+|++.+++++.
T Consensus 167 ~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-- 238 (289)
T cd00200 167 G---KCVATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS-- 238 (289)
T ss_pred c---ccceeEecCccccceEEECCCcCEEEEec---CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc--
Confidence 4 34666777888999999999986555543 5999999999998888888 4556899999999988887764
Q ss_pred CccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
.++.|++|++.+++....+..|...|.+++|+|++++|++++.||.|++|+
T Consensus 239 ----~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 239 ----EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ----CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 389999999999999999999999999999999999999999999999996
No 29
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.7e-38 Score=241.16 Aligned_cols=271 Identities=21% Similarity=0.356 Sum_probs=231.7
Q ss_pred eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC-CcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEE
Q 040533 78 QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE-TSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIIN 156 (364)
Q Consensus 78 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 156 (364)
.++..+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++. .-+-...+++|.+.|..+.|.+ +++.+++++.|.+++.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRG 116 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEE
Confidence 3455677999999999999999999999999999999954 3455667889999999999999 9999999999999999
Q ss_pred EEcccCcceeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 157 HDVRVSNNVTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
||.++++. ...++.|..-|+.+.-+.-| .++.+++.|+++++||+|+... ++++. ..-+++++.|...+..++.
T Consensus 117 wD~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~---~~t~~-~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 117 WDAETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA---IKTFE-NKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred Eeccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch---hhccc-cceeEEEEEecccccceee
Confidence 99999886 77788999999998844433 4778889999999999987543 44443 3567899999998866655
Q ss_pred eecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC----Cceeeeccccc
Q 040533 236 SGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH----MTKWGELQHQT 310 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~----~~~~~~~~~~~ 310 (364)
|+ -|+.|++||++.+.....+.++ .+|+.+..+|+|.++++-. .|..+++||++- .+++..+++|.
T Consensus 192 -gg--Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns------Md~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 192 -GG--IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS------MDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred -cc--ccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc------ccceEEEEEecccCCCCceEEEeecch
Confidence 43 8999999999999999998876 7799999999999998764 499999999864 34466666653
Q ss_pred ----cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 311 ----SRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 311 ----~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.....++|+|+++.+.+|+.|..+++||......+..+.+|.+.|++++|+|.
T Consensus 263 hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~ 319 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPT 319 (338)
T ss_pred hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCC
Confidence 23467899999999999999999999999999999999999999999999996
No 30
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.9e-38 Score=245.80 Aligned_cols=277 Identities=20% Similarity=0.358 Sum_probs=242.1
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++..|.+ +++++.|+++.|||+.++++. .++.+|...|..+++|+-..||++++.|+.|+.||++..+.++.
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk--ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~ 230 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK--LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRH 230 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEcccCeEE--EeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHH
Confidence 47777777743 777889999999999999874 45669999999999999999999999999999999999999999
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+.+|-..|.|++.+| .-+.|++|+.|.++++||+++... +..+.+|..+|..+.+.|-...+++|+.|++|++||++.
T Consensus 231 YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~-V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a 308 (460)
T KOG0285|consen 231 YHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRAS-VHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA 308 (460)
T ss_pred hccccceeEEEeccc-cceeEEecCCcceEEEeeecccce-EEEecCCCCcceeEEeecCCCceEEecCCceEEEeeecc
Confidence 999999999999999 999999999999999999998876 778899999999999999888999999999999999887
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccC
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~ 283 (364)
+.. ...+..|...|++++.+|.. +++++++ ...|+-|++..|..+..+..+ .-+.+++.+.++-++..
T Consensus 309 gkt---~~tlt~hkksvral~lhP~e-~~fASas---~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G---- 377 (460)
T KOG0285|consen 309 GKT---MITLTHHKKSVRALCLHPKE-NLFASAS---PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSG---- 377 (460)
T ss_pred Cce---eEeeecccceeeEEecCCch-hhhhccC---CccceeccCCccchhhccccccceeeeeeeccCceEEEc----
Confidence 644 78888899999999999987 7888875 456999999999988887665 45788998888766543
Q ss_pred CccCCCCeEEEeeCCCCceeeeccc--------cccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGELQH--------QTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~~~--------~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
+++|.+.+||.+++...+..+. .+..|++.+|...|..|++|..|.+|++|.-..
T Consensus 378 ---~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 378 ---GDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ---CCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 4589999999998876655421 245689999999999999999999999998554
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=273.46 Aligned_cols=281 Identities=23% Similarity=0.439 Sum_probs=239.6
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec-CCcceeee
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA-ETSKLIRN 124 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~-~~~~~~~~ 124 (364)
+.++++++++ +++++.++.+++|+..+.+......+.+|...|.+++|+|+++++++|+.|++|+|||+ ..+..+++
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~ 241 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT 241 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEE
Confidence 5557777753 56666899999999976662223344699999999999999999999999999999999 55688999
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+.+|...|++++|+| .++++++|+.|++|++||++++. +...+.+|.+.|++++|++++++|++++.|+.|++||+.+
T Consensus 242 l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~ 319 (456)
T KOG0266|consen 242 LKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET 319 (456)
T ss_pred ecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCC
Confidence 999999999999999 77999999999999999999855 5888999999999999999999999999999999999887
Q ss_pred CCCCcceEEeccccc--ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC----CeEEEEEcCCcccee
Q 040533 205 MSSSKCLHRFRDHRA--AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA----QICGLEWNRHHKEIL 278 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~ 278 (364)
+... +...+..+.. +++++.|+|++.+++... .|+.+++||+..+.....+..+. .+.+...++.+.+++
T Consensus 320 ~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (456)
T KOG0266|consen 320 GSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSAS---LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIY 395 (456)
T ss_pred Ccee-eeecccCCCCCCceeEEEECCCCcEEEEec---CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEE
Confidence 6521 2344444444 599999999997666643 79999999999998888876542 345556688999999
Q ss_pred eeccCCccCCCCeEEEeeCCCCceeeecccc-ccceeEEeecCCCCEEEEEe--CCCcEEEEEee
Q 040533 279 SGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-TSRILELSQSPDGLTVVSAA--ADETLRFWEAF 340 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~--~dg~i~vw~~~ 340 (364)
+|.. |+.|++|++.++..+..+.+| ...+..+.++|...++++++ .|+.+++|...
T Consensus 396 sg~~------d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 396 SGSE------DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEeC------CceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 8854 999999999999999999999 88999999999999999998 78999999754
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-38 Score=263.88 Aligned_cols=267 Identities=17% Similarity=0.305 Sum_probs=246.4
Q ss_pred cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 84 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
..+.+.|.++.|+|...+++++-.+|.|.||+.++...++.+.-...+|++..|-+ ..+.+++|+.|..|++|+..+.+
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~e 88 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGE 88 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccce
Confidence 35789999999999999999999999999999999999999999999999999999 99999999999999999999988
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
+ +..+.+|.+.|.+++.+|...++++++.|-.|++||.+.. ..+.+++.+|...|++++|+|.+.+.+++++ .|+
T Consensus 89 k-V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s--LDr 163 (794)
T KOG0276|consen 89 K-VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--WACEQTFEGHEHYVMQVAFNPKDPNTFASAS--LDR 163 (794)
T ss_pred e-eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc--eeeeeEEcCcceEEEEEEecCCCccceeeee--ccc
Confidence 6 7889999999999999999999999999999999998764 5678999999999999999999999999987 999
Q ss_pred eEEEEECCCCeEEEEEecC-CCeEEEEEcCCc--cceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC
Q 040533 244 CIKIWNVQKGTCIHSVDTK-AQICGLEWNRHH--KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP 320 (364)
Q Consensus 244 ~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~--~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 320 (364)
+|++|.+....+..+++.+ ..|+++.+-+.| +++++| ++|..++|||.++..++.++.+|...|..+.|+|
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg------aDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp 237 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG------ADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP 237 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec------CCCceEEEeecchHHHHHHhhcccccceEEEecC
Confidence 9999999999999998865 669999998866 678877 5699999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 321 DGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 321 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
.-.++++||+||+++||+..+-+...++.-..+.|++++-.+
T Consensus 238 ~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k 279 (794)
T KOG0276|consen 238 ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK 279 (794)
T ss_pred CCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC
Confidence 999999999999999999999888888776677888877443
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.5e-38 Score=270.92 Aligned_cols=239 Identities=23% Similarity=0.394 Sum_probs=210.0
Q ss_pred eecccCCCcc-EEEE-EeCCeEEEEECCCCce-----------------------------eeeeeecCCCCCceEEEEc
Q 040533 48 SNMMDWGRNN-ILAI-ALGLELYLWKQENGEV-----------------------------QKLLKVTGEDDFPTSISWS 96 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~-~~~~~i~iw~~~~~~~-----------------------------~~~~~~~~~~~~v~~~~~s 96 (364)
++|..++++. ++|. -.|..|++|.+...+. ....++.+|.++|..+.|+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 5777888864 4444 4688999999874221 0122356999999999999
Q ss_pred CCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcE
Q 040533 97 QDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEV 176 (364)
Q Consensus 97 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v 176 (364)
|+.++|+++++|+++++|.+.+...+..+++|..+|+.+.|+| .|.+||+++.|++.++|...... +.+.+.+|.+.|
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~-PlRifaghlsDV 538 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNK-PLRIFAGHLSDV 538 (707)
T ss_pred ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCC-chhhhccccccc
Confidence 9999999999999999999999999999999999999999999 99999999999999999988655 478889999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE
Q 040533 177 CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI 256 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 256 (364)
.|+.|+|+.+++++|+.|.+|++||+.++.. ++.|.+|.++|.+++|+|+| ..+++|+ .||.|.+||+.+++.+
T Consensus 539 ~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~---VRiF~GH~~~V~al~~Sp~G-r~LaSg~--ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 539 DCVSFHPNSNYVATGSSDRTVRLWDVSTGNS---VRIFTGHKGPVTALAFSPCG-RYLASGD--EDGLIKIWDLANGSLV 612 (707)
T ss_pred ceEEECCcccccccCCCCceEEEEEcCCCcE---EEEecCCCCceEEEEEcCCC-ceEeecc--cCCcEEEEEcCCCcch
Confidence 9999999999999999999999999887654 99999999999999999999 5677766 9999999999999998
Q ss_pred EEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC
Q 040533 257 HSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 257 ~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
..+.. .+.+.++.|+.+|..|++++. |+.|++||+...
T Consensus 613 ~~l~~Ht~ti~SlsFS~dg~vLasgg~------DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 613 KQLKGHTGTIYSLSFSRDGNVLASGGA------DNSVRLWDLTKV 651 (707)
T ss_pred hhhhcccCceeEEEEecCCCEEEecCC------CCeEEEEEchhh
Confidence 87754 477999999999999999865 999999998653
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9e-38 Score=266.12 Aligned_cols=307 Identities=19% Similarity=0.305 Sum_probs=258.3
Q ss_pred cceeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee
Q 040533 45 DYYSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 45 ~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
+-.+.+++..|++ ++++.....+++|+++++++.+.... .|+.+|.-++|+|.+..|++|+.||.++|||+..+.+.
T Consensus 62 ~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa-~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 62 EDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKA-IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred hhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhh-ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 3346677777753 67777888999999999987655543 49999999999999999999999999999999999999
Q ss_pred eeeecCCCcEEEEEeecCCC--CEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 123 RNLEGHDKRVATASWNHWNG--HILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
..+++|.+.|.++.|+| +. .+|++|..|+.+++||++........+..|.+.|++++|++|+..+++++.|..+.+|
T Consensus 141 h~fkG~gGvVssl~F~~-~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vw 219 (775)
T KOG0319|consen 141 HSFKGHGGVVSSLLFHP-HWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVW 219 (775)
T ss_pred EEecCCCceEEEEEeCC-ccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEe
Confidence 99999999999999998 44 4689999999999999997776677788999999999999999999999999999999
Q ss_pred eCCC----------------------------------------------------------------------------
Q 040533 201 DHSK---------------------------------------------------------------------------- 204 (364)
Q Consensus 201 d~~~---------------------------------------------------------------------------- 204 (364)
|+..
T Consensus 220 d~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~v 299 (775)
T KOG0319|consen 220 DLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLV 299 (775)
T ss_pred ehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEE
Confidence 9754
Q ss_pred ---------------------------------C-----------------------------------------CC---
Q 040533 205 ---------------------------------M-----------------------------------------SS--- 207 (364)
Q Consensus 205 ---------------------------------~-----------------------------------------~~--- 207 (364)
+ ..
T Consensus 300 taeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~l 379 (775)
T KOG0319|consen 300 TAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDL 379 (775)
T ss_pred EccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcE
Confidence 0 00
Q ss_pred ---------------------CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE---EEE----
Q 040533 208 ---------------------SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI---HSV---- 259 (364)
Q Consensus 208 ---------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~---~~~---- 259 (364)
..++....+|...|.+++++..+..++++++ .|+++++|++...+.. ..+
T Consensus 380 lat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS--~D~tlK~W~l~~s~~~~~~~~~~~~~ 457 (775)
T KOG0319|consen 380 LATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS--QDCTLKLWDLPKSKETAFPIVLTCRY 457 (775)
T ss_pred EEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEec--CCceEEEecCCCcccccccceehhhH
Confidence 0001112346666777777777777788876 9999999999772221 111
Q ss_pred ---ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEE
Q 040533 260 ---DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRF 336 (364)
Q Consensus 260 ---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~v 336 (364)
.|+..|++++++|+.+++++|+ .|.+.+||+++..+....+.+|...|.++.|+|..+.++|+|.|++|+|
T Consensus 458 t~~aHdKdIN~Vaia~ndkLiAT~S------qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKI 531 (775)
T KOG0319|consen 458 TERAHDKDINCVAIAPNDKLIATGS------QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKI 531 (775)
T ss_pred HHHhhcccccceEecCCCceEEecc------cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEE
Confidence 2557899999999999999885 4999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCcceeccCCceeeeeec
Q 040533 337 WEAFGPSGSGDFVSHLDGLLSLKVS 361 (364)
Q Consensus 337 w~~~~~~~~~~~~~~~~~v~~~~~s 361 (364)
|.+.+...+++|.||...|..++|-
T Consensus 532 W~is~fSClkT~eGH~~aVlra~F~ 556 (775)
T KOG0319|consen 532 WSISTFSCLKTFEGHTSAVLRASFI 556 (775)
T ss_pred EEeccceeeeeecCccceeEeeeee
Confidence 9999999999999999999988873
No 35
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.9e-36 Score=253.33 Aligned_cols=268 Identities=28% Similarity=0.521 Sum_probs=237.5
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc
Q 040533 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV 161 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 161 (364)
.+.+|.++|++++|+|++++|++++.+|.|.+|++.+++....+..|...+..+.|+| +++++++++.+|.|++||+..
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCc
Confidence 3458999999999999999999999999999999999888888888999999999999 889999999999999999987
Q ss_pred CcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC
Q 040533 162 SNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241 (364)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 241 (364)
.+. ...+..|...+.++.|+++++++++++.++.+.+||+++. +....+..|...+.+++|+|++ .++++++ .
T Consensus 83 ~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~--~ 155 (289)
T cd00200 83 GEC-VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG---KCLTTLRGHTDWVNSVAFSPDG-TFVASSS--Q 155 (289)
T ss_pred ccc-eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc---EEEEEeccCCCcEEEEEEcCcC-CEEEEEc--C
Confidence 553 5667788889999999999888988888999999998753 4466777788899999999986 5666654 6
Q ss_pred CCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC
Q 040533 242 DGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP 320 (364)
Q Consensus 242 d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 320 (364)
++.|++||+++++.+..+..+ ..+.++.|+|+++.++++.. ++.|++||+.+++.+..+..|...+.++.|+|
T Consensus 156 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 229 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS------DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP 229 (289)
T ss_pred CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC------CCcEEEEECCCCceecchhhcCCceEEEEEcC
Confidence 999999999988888877655 48999999999988888754 99999999999999999988999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 321 DGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 321 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++.++++++.||.|++|++.+++....+..|...|.+++|+|.
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 272 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD 272 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCC
Confidence 9989998888999999999988888888889999999999984
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.6e-37 Score=241.18 Aligned_cols=274 Identities=19% Similarity=0.336 Sum_probs=227.3
Q ss_pred eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
+..+..|.+.|.+++.+|+.+++|+|+.|..-.+|++.++.....+.+|+..|+++.|+. ++.+||+|+-+|.|+||+.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEc
Confidence 345669999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
.++... ..+...-..+.-+.|+|.+..|+.|+.||.+.+|.+.+. ...+.+.+|+.++++-.|.|+|+.++. +
T Consensus 136 stg~~~-~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~---~~~kv~~Gh~~~ct~G~f~pdGKr~~t-g-- 208 (399)
T KOG0296|consen 136 STGGEQ-WKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ---ALCKVMSGHNSPCTCGEFIPDGKRILT-G-- 208 (399)
T ss_pred ccCceE-EEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc---ceeeEecCCCCCcccccccCCCceEEE-E--
Confidence 988753 334345577889999999999999999999999998774 347888999999999999999966555 3
Q ss_pred CCCCeEEEEECCCCeEEEEEec--CCCeEEEEEcCCccceeeec------------------------------------
Q 040533 240 TQDGCIKIWNVQKGTCIHSVDT--KAQICGLEWNRHHKEILSGH------------------------------------ 281 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~------------------------------------ 281 (364)
+.||+|++||+.+++++..+.. +.+..++.++..+..++.|.
T Consensus 209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 3899999999999998877751 11122222221111111110
Q ss_pred -----------cCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 282 -----------GFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 282 -----------~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
..+.++-||+|.|||+...+....+. |...|+.+.|-+ ..+|++++.||.|+.||.++++.+..+.+
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence 01234669999999998877766664 778899999988 67999999999999999999999999999
Q ss_pred cCCceeeeeeccC
Q 040533 351 HLDGLLSLKVSPI 363 (364)
Q Consensus 351 ~~~~v~~~~~sp~ 363 (364)
|..+|.+++.+|.
T Consensus 367 H~~~Il~f~ls~~ 379 (399)
T KOG0296|consen 367 HQMGILDFALSPQ 379 (399)
T ss_pred CchheeEEEEcCC
Confidence 9999999999985
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.9e-37 Score=260.77 Aligned_cols=295 Identities=22% Similarity=0.380 Sum_probs=256.5
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEE-cCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEE
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISW-SQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVAT 134 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 134 (364)
..++++..+..+.++|.++.+... .+-|..+.|.+++| .|+.++||+++..+.+++|++.+..+. .+.+|...|.+
T Consensus 294 ~~~l~vtaeQnl~l~d~~~l~i~k--~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlS 370 (775)
T KOG0319|consen 294 SQLLLVTAEQNLFLYDEDELTIVK--QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLS 370 (775)
T ss_pred CceEEEEccceEEEEEccccEEeh--hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheee
Confidence 568899999999999998887643 34488899999997 467789999999999999998877765 78999999999
Q ss_pred EEeecCCCCEEEEeeCCCcEEEEEcccCc---ceeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcc
Q 040533 135 ASWNHWNGHILTSGSQDKSIINHDVRVSN---NVTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKC 210 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~ 210 (364)
++... ++.+|++|+.|.++++|.++.+. .+.....+|...|.+++++..+ .+|++++.|+++++|++...+....
T Consensus 371 L~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 371 LDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF 449 (775)
T ss_pred eeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence 99444 67899999999999999884432 2345667899999999997744 5899999999999999987322221
Q ss_pred --eE----EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccC
Q 040533 211 --LH----RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 211 --~~----~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~ 283 (364)
.. ....|...|++++.+|+. .++++|+ +|.+.++|++.......++.++ ..+.++.|+|..+.++++++
T Consensus 450 ~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~S--qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg- 525 (775)
T KOG0319|consen 450 PIVLTCRYTERAHDKDINCVAIAPND-KLIATGS--QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSG- 525 (775)
T ss_pred cceehhhHHHHhhcccccceEecCCC-ceEEecc--cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccC-
Confidence 22 234689999999999987 7999987 9999999999999999999876 56999999999999998865
Q ss_pred CccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|.+|+||.+.+..++.++.+|...|..+.|-.+|..|++++.||.|++|++++.+.+.++..|.+.|++++-+|.
T Consensus 526 -----D~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~ 600 (775)
T KOG0319|consen 526 -----DKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPL 600 (775)
T ss_pred -----CceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998875
No 38
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5e-36 Score=226.90 Aligned_cols=270 Identities=20% Similarity=0.397 Sum_probs=225.9
Q ss_pred eeeeeecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecCCc---ceeeee-ecCCCcEEEEEeecCCCCEEEEeeCCC
Q 040533 78 QKLLKVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAETS---KLIRNL-EGHDKRVATASWNHWNGHILTSGSQDK 152 (364)
Q Consensus 78 ~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg 152 (364)
.....+++|.+.+..++|+|- |..||+|+.|..|+||+...+ .+...+ .+|+..|++++|+| .+++|++++.|.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~ 83 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDA 83 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccc
Confidence 345667799999999999997 889999999999999998853 233233 36999999999999 999999999999
Q ss_pred cEEEEEcccCc-ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCC
Q 040533 153 SIINHDVRVSN-NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF 231 (364)
Q Consensus 153 ~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 231 (364)
++.||.-..+. ..+..+.+|...|.+++|+++|++||+++.|+.|-||.+.......+...+++|...|..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~- 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE- 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-
Confidence 99999865443 4577889999999999999999999999999999999999877888899999999999999999976
Q ss_pred cEEEeecCCCCCeEEEEECC---CCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc
Q 040533 232 NVLASGGGTQDGCIKIWNVQ---KGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~---~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 307 (364)
.+|++++ .|++|++|+-. ...+.+++..+ ..|.+++|++.|..|+++ ++|++++||...+.- -.
T Consensus 163 dlL~S~S--YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~------sdD~tv~Iw~~~~~~----~~ 230 (312)
T KOG0645|consen 163 DLLFSCS--YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSC------SDDGTVSIWRLYTDL----SG 230 (312)
T ss_pred ceeEEec--cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEe------cCCcceEeeeeccCc----ch
Confidence 6888876 99999999876 34678888765 589999999999988887 459999999865211 12
Q ss_pred ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCc-------ceeccCCceeeeeeccC
Q 040533 308 HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSG-------DFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 308 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~-------~~~~~~~~v~~~~~sp~ 363 (364)
.|...++.+.|. ...|++++.|+.|++|.-....... .-..|...|++++|.|.
T Consensus 231 ~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 231 MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC
Confidence 367889999998 4489999999999999877542211 22368889999999993
No 39
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-37 Score=246.55 Aligned_cols=267 Identities=17% Similarity=0.214 Sum_probs=231.8
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc---ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS---KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
+..|.+.|.-+.||++|++||+++.|.+..||++... +..+++.+|..+|..+.|+| +.++|++++.+..+.+||+
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeeccC
Confidence 4589999999999999999999999999999997654 34678889999999999999 9999999999999999999
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc-ccceeEEEEccCCCcEEEeec
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH-RAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~ 238 (364)
.++......-.++...+.+++|.|||..+++|+.|+.+..||+.... +...++. ...|.+++..+||+++++.+
T Consensus 299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~----~~~W~gvr~~~v~dlait~Dgk~vl~v~- 373 (519)
T KOG0293|consen 299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI----LGNWEGVRDPKVHDLAITYDGKYVLLVT- 373 (519)
T ss_pred CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch----hhcccccccceeEEEEEcCCCcEEEEEe-
Confidence 99986555545566889999999999999999999999999987432 3344433 24689999999999988887
Q ss_pred CCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccc--eeEE
Q 040533 239 GTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSR--ILEL 316 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~--i~~i 316 (364)
.|..|++++..+......+..+.++++++.|.+++++++.-. +..+.+||+...+.+..+.+|... +..-
T Consensus 374 --~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~------~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS 445 (519)
T KOG0293|consen 374 --VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQ------DQEIHLWDLEENKLVRKYFGHKQGHFIIRS 445 (519)
T ss_pred --cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcc------cCeeEEeecchhhHHHHhhcccccceEEEe
Confidence 599999999988877777788899999999999999998754 999999999999999999998754 3333
Q ss_pred eecC-CCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 317 SQSP-DGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 317 ~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+|-- +..++++||+|+.|+||+..+++++..+.||...|++|+|+|.
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence 4543 4479999999999999999999999999999999999999995
No 40
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-36 Score=227.81 Aligned_cols=265 Identities=22% Similarity=0.386 Sum_probs=220.6
Q ss_pred eCCeEEEEECCCCc-eeeeeeecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecCC-cceeeeeecCCCcEEEEEeec
Q 040533 63 LGLELYLWKQENGE-VQKLLKVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAET-SKLIRNLEGHDKRVATASWNH 139 (364)
Q Consensus 63 ~~~~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~ 139 (364)
..|.+.|.++...+ ......+ .-.+.+..++|+++ .+.+++++.||+++|||+.. ..++..++.|...|.++.|++
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~ 114 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNT 114 (311)
T ss_pred cCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEecccc
Confidence 36899999996443 3333333 55788999999995 46788888999999999643 367788999999999999999
Q ss_pred CCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccc
Q 040533 140 WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHR 218 (364)
Q Consensus 140 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 218 (364)
..++.+++++.|++|++|+...++. +.++.+|...|....|+| ..+++++++.|+.+++||++... +.+. +..|.
T Consensus 115 ~~r~~~ltsSWD~TiKLW~~~r~~S-v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g--k~~~-i~ah~ 190 (311)
T KOG0277|consen 115 VRRRIFLTSSWDGTIKLWDPNRPNS-VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG--KFMS-IEAHN 190 (311)
T ss_pred ccceeEEeeccCCceEeecCCCCcc-eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC--ceeE-EEecc
Confidence 8889999999999999999986665 777999999999999999 67899999999999999998763 3333 77899
Q ss_pred cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 219 AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 219 ~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
..+.++.|+....+++++|+ .|+.|+.||+++- .++..+..+ -.|..+.|||...-+++.. +-|-+++|||
T Consensus 191 ~Eil~cdw~ky~~~vl~Tg~--vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSa-----sYDmT~riw~ 263 (311)
T KOG0277|consen 191 SEILCCDWSKYNHNVLATGG--VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASA-----SYDMTVRIWD 263 (311)
T ss_pred ceeEeecccccCCcEEEecC--CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhc-----cccceEEecc
Confidence 99999999999999999987 9999999999984 445555443 5699999999877666543 4499999999
Q ss_pred CCC-CceeeeccccccceeEEeecC-CCCEEEEEeCCCcEEEEEe
Q 040533 297 YPH-MTKWGELQHQTSRILELSQSP-DGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 297 ~~~-~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~vw~~ 339 (364)
... ...+.+...|..-+..+.||+ ++.++|+++.|+.++||+.
T Consensus 264 ~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 264 PERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 974 445666778899999999998 5679999999999999984
No 41
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=8.5e-38 Score=233.99 Aligned_cols=280 Identities=18% Similarity=0.315 Sum_probs=249.2
Q ss_pred eecccCCC---cc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee
Q 040533 48 SNMMDWGR---NN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 48 ~~~~~~~~---~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
+..++|+| ++ +++++.|+.-.+-+-++|..+..+ .+|.+.|.+.+++.+....|+++.|-+-+|||.-+|..+
T Consensus 17 vvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf--eghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel 94 (334)
T KOG0278|consen 17 VVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF--EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL 94 (334)
T ss_pred eeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee--eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh
Confidence 55667766 33 677788999888888999886555 499999999999999989999999999999999999999
Q ss_pred eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 123 RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
..+. |..-|.+++|+. +.++|++|+.+..+++||++..+.+...+.+|.+.|..+.|....+.++++..|++|++||.
T Consensus 95 hsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 95 HSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred hhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence 9987 889999999999 99999999999999999999888778889999999999999998889999999999999999
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeecc
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 282 (364)
+++.. ++.+. .+.+|+++..+++|. ++.++ ..+.|.+||..+...++.++.+..|.+...+|+...+++|
T Consensus 173 rTgt~---v~sL~-~~s~VtSlEvs~dG~-ilTia---~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaG-- 242 (334)
T KOG0278|consen 173 RTGTE---VQSLE-FNSPVTSLEVSQDGR-ILTIA---YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAG-- 242 (334)
T ss_pred ccCcE---EEEEe-cCCCCcceeeccCCC-EEEEe---cCceeEEeccccccceeeccCccccccccccCCCceEEec--
Confidence 88654 66654 467899999999995 55544 4688999999999999999999999999999999888887
Q ss_pred CCccCCCCeEEEeeCCCCceeeec-cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCC
Q 040533 283 FSSSGDGQKLCLWKYPHMTKWGEL-QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 283 ~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 345 (364)
++|..++.||..+++.+..+ ++|.++|.++.|+|+|...++||.||+|++|.+..++..
T Consensus 243 ----ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 243 ----GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ----CcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 45999999999999999986 899999999999999999999999999999998877654
No 42
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.7e-37 Score=249.86 Aligned_cols=276 Identities=18% Similarity=0.323 Sum_probs=232.6
Q ss_pred eecccCCCc--c-EEEEEeCCeEEEEECCC-CceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 48 SNMMDWGRN--N-ILAIALGLELYLWKQEN-GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 48 ~~~~~~~~~--~-~~~~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
++++.|.|. . +++++.|+.|+||++-. +++ +.++.+|..+|.+++|+++|..+++++.|+.|++||+++|+++.
T Consensus 217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~--lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~ 294 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC--LRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLS 294 (503)
T ss_pred cchhhhccceeeEEEecCCCceEEEEEEecCcce--ehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEE
Confidence 788899883 2 66778899999999877 444 45566999999999999999999999999999999999999999
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.+. ....++|+.|+|++.+.+++|+.|+.|+.||+++++ ++..+..|-+.|..+.|-++|+++++.++|++++||+.+
T Consensus 295 ~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~ 372 (503)
T KOG0282|consen 295 RFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENR 372 (503)
T ss_pred EEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcC
Confidence 988 567889999999555999999999999999999887 577788899999999999999999999999999999988
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE---EEEEec---CCCeEEEEEcCCccce
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC---IHSVDT---KAQICGLEWNRHHKEI 277 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~---~~~v~~~~~~~~~~~l 277 (364)
.+...+.+.... .....++..+|+++.+++ - +.|+.|.++.+...-. ...++. .+.-..+.|||+|.+|
T Consensus 373 ~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~a-Q--s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l 447 (503)
T KOG0282|consen 373 IPVPIKNIADPE--MHTMPCLTLHPNGKWFAA-Q--SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTL 447 (503)
T ss_pred CCccchhhcchh--hccCcceecCCCCCeehh-h--ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeE
Confidence 765433333332 334568899999965554 3 3899999998754221 122222 3567889999999999
Q ss_pred eeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCC-CEEEEEeCCCcEEEEE
Q 040533 278 LSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG-LTVVSAAADETLRFWE 338 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~vw~ 338 (364)
++|.+ +|.+.+||.++-+.+..++.|.+++..+.|+|.. ..+|+++.||.|++|+
T Consensus 448 ~SGds------dG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 448 CSGDS------DGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EeecC------CccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99976 9999999999999999999999999999999965 5799999999999996
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.3e-38 Score=246.31 Aligned_cols=271 Identities=19% Similarity=0.436 Sum_probs=231.7
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
+.++.+..+.++++..|++|+|||.++..+... +.||.+.|.|+.| +.+.+++|+.|.+|+|||.++++++.++-.
T Consensus 200 VYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~--L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlih 275 (499)
T KOG0281|consen 200 VYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKI--LTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIH 275 (499)
T ss_pred eEEEEecchhhhcccccCceEEeccccHHHHHh--hhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhh
Confidence 567778888899999999999999988877544 4499999999999 456999999999999999999999999999
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc--ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN--NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
|.+.|..+.| ++.++++++.|.++.+||+.... .+...+.+|...|+.+.|+ .+++++++.|.+|++|++.+.
T Consensus 276 HceaVLhlrf---~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 276 HCEAVLHLRF---SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred hcceeEEEEE---eCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce
Confidence 9999999999 67899999999999999998664 2345678999999999996 459999999999999997765
Q ss_pred CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCC-eEEEEEcCCccceeeeccCC
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFS 284 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~~ 284 (364)
..+.++.+|...|-|+.+.. .++++|+ .|.+|++||+..|.+++.++++.. |.++.|. .+.+++|.-
T Consensus 351 ---efvRtl~gHkRGIAClQYr~---rlvVSGS--SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaY-- 418 (499)
T KOG0281|consen 351 ---EFVRTLNGHKRGIACLQYRD---RLVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAY-- 418 (499)
T ss_pred ---eeehhhhcccccceehhccC---eEEEecC--CCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccc--
Confidence 55899999999998888753 6888866 999999999999999999987754 8888885 456676643
Q ss_pred ccCCCCeEEEeeCCCCce---------eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCC
Q 040533 285 SSGDGQKLCLWKYPHMTK---------WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~~~~---------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 345 (364)
||.|++||+..+.. +..+..|.+.|..+.| |...+++++.|.+|-|||+..+..-
T Consensus 419 ----DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 419 ----DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ----cceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 99999999976543 3445578899999999 6678999999999999999877654
No 44
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8.3e-38 Score=254.24 Aligned_cols=269 Identities=19% Similarity=0.322 Sum_probs=233.0
Q ss_pred eeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCC-cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEE
Q 040533 80 LLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAET-SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINH 157 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 157 (364)
+..+.+|...|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|..++|++ .+..+++++.|+.+++|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLW 285 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeee
Confidence 456779999999999999 889999999999999999876 899999999999999999999 99999999999999999
Q ss_pred EcccCcceeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 158 DVRVSNNVTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 158 d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
|+++++.. ..+ .....++|+.|+|++ +.+++|+.|+.|+.||+|.++ .++.+..|-+.|..+.|-+++..++.+
T Consensus 286 DtETG~~~-~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k---vvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 286 DTETGQVL-SRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK---VVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred ccccceEE-EEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH---HHHHHHhhhhheeeeEEccCCceEeee
Confidence 99999863 333 234567999999988 899999999999999998864 588888899999999999999776665
Q ss_pred ecCCCCCeEEEEECCCCeEEEEEecC--CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC---ceeeeccccc-
Q 040533 237 GGGTQDGCIKIWNVQKGTCIHSVDTK--AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM---TKWGELQHQT- 310 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~---~~~~~~~~~~- 310 (364)
. .|++++||+.+..-.+..+... ....++..+|+++++++-+. |+.|.+|.+... .....+++|.
T Consensus 361 S---Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~------dN~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 361 S---DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM------DNYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred c---cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc------CceEEEEecccccccCHhhhhcceec
Confidence 4 7999999999988776554332 45778999999999988744 999999987543 2334566775
Q ss_pred -cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 311 -SRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 311 -~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+.-..+.|||||++|++|+.||.+.+||.++.+.+..+..|..++..+.|+|.
T Consensus 432 aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC
Confidence 45678899999999999999999999999999999999999999999999995
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.3e-37 Score=243.70 Aligned_cols=254 Identities=19% Similarity=0.375 Sum_probs=221.5
Q ss_pred CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 86 EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
....|+|+.+ |...+++|..|.+|+|||..+..+.+.+.+|.+.|.|+.| +.+.+++|+.|.+|++||+++++.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy---d~rviisGSSDsTvrvWDv~tge~- 269 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY---DERVIVSGSSDSTVRVWDVNTGEP- 269 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec---cceEEEecCCCceEEEEeccCCch-
Confidence 3567999998 5567999999999999999999999999999999999999 778999999999999999999886
Q ss_pred eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeE
Q 040533 166 TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 245 (364)
+..+-.|...|..+.|+. .++++++.|.++.+||+..+......+.+.+|...|+.+.|+. .++++++ .|.+|
T Consensus 270 l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsAS--gDRTi 342 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSAS--GDRTI 342 (499)
T ss_pred hhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEec--CCceE
Confidence 666778999999999974 4999999999999999988776666777889999999999975 3666665 69999
Q ss_pred EEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCE
Q 040533 246 KIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLT 324 (364)
Q Consensus 246 ~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 324 (364)
++|++.+++.++++..+ ..|.++.+ .++++++|+. |++|++||+..|.++..+++|+.-|.++.| |.+.
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS------DntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~kr 412 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS------DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKR 412 (499)
T ss_pred EEEeccceeeehhhhcccccceehhc--cCeEEEecCC------CceEEEEeccccHHHHHHhchHHhhhheee--cCce
Confidence 99999999999998765 45777665 5788888754 999999999999999999999999999999 6678
Q ss_pred EEEEeCCCcEEEEEeeCCCCC---------cceeccCCceeeeeecc
Q 040533 325 VVSAAADETLRFWEAFGPSGS---------GDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 325 l~~~~~dg~i~vw~~~~~~~~---------~~~~~~~~~v~~~~~sp 362 (364)
+++|+.||+|+|||+..+... ..+..|.+.|..+.|..
T Consensus 413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~ 459 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE 459 (499)
T ss_pred eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc
Confidence 999999999999999887654 24456888898888853
No 46
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-36 Score=250.59 Aligned_cols=276 Identities=15% Similarity=0.247 Sum_probs=246.9
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++++|.. ++++-.+|.|.|||.++....+.++. ...+|.+..|-+..+++++|+.|..|+||+..+++.+..
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV--~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~ 92 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT 92 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee--cccchhhheeeeccceEEEecCCceEEEEecccceeeEE
Confidence 37888899853 77888899999999999988766664 477899999999999999999999999999999999999
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 203 (364)
+.+|..-|++++.+| ...++++++.|-+|++||.+..-...+.+.+|...|.+++|+| |.+.+++++-|++|++|.+.
T Consensus 93 FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg 171 (794)
T KOG0276|consen 93 FEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG 171 (794)
T ss_pred eeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcC
Confidence 999999999999999 8999999999999999999988888899999999999999999 77899999999999999976
Q ss_pred CCCCCcceEEecccccceeEEEEccCC-CcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeec
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQ-FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~ 281 (364)
.. .+..++.+|...|+++.+-+.| +-.+++|+ .|.++++||.++..++++++++ ..|..+.|+|.-..+++|
T Consensus 172 s~---~~nfTl~gHekGVN~Vdyy~~gdkpylIsga--DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg- 245 (794)
T KOG0276|consen 172 SP---HPNFTLEGHEKGVNCVDYYTGGDKPYLISGA--DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG- 245 (794)
T ss_pred CC---CCceeeeccccCcceEEeccCCCcceEEecC--CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe-
Confidence 54 5588999999999999998755 23566655 8999999999999999999866 679999999999999988
Q ss_pred cCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEE
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRF 336 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~v 336 (364)
++||+++||+..+.+...++.-....+.+++-.+.++.++.|..+|.|.+
T Consensus 246 -----sEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 246 -----SEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred -----cCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 55999999999999998888888889999999998888888887777643
No 47
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-34 Score=237.89 Aligned_cols=299 Identities=16% Similarity=0.281 Sum_probs=243.7
Q ss_pred eecccCCCccEEEEEe--CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC--CcEEEEecCCcceee
Q 040533 48 SNMMDWGRNNILAIAL--GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA--SKLQLWDAETSKLIR 123 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iw~~~~~~~~~ 123 (364)
++...++|.+...++. .|.|+|||....+.....+++.-.++|..++|++|++++++.++. ...+++-.++|..+.
T Consensus 62 vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvG 141 (603)
T KOG0318|consen 62 VTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVG 141 (603)
T ss_pred eEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccc
Confidence 5666778876555544 489999998876665556666778999999999999998887643 223344445788889
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.+.+|...|++++|-|...-.+++|+.|++|.+|+-... ++...+..|..-|.++.|+|||+++++++.||++.+||
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF-KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyD-- 218 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF-KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYD-- 218 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe-eeeecccccccceeeEEECCCCCeEEEecCCccEEEEc--
Confidence 999999999999999977789999999999999985422 34556778999999999999999999999999999999
Q ss_pred CCCCCcceEEec---ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCC----eEEEEEcCCccc
Q 040533 204 KMSSSKCLHRFR---DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ----ICGLEWNRHHKE 276 (364)
Q Consensus 204 ~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~----v~~~~~~~~~~~ 276 (364)
+..++.+..+. +|.+.|.+++|+||+..++.++ .|.+++|||..+.++++++..... ...+.|- +..
T Consensus 219 -Gktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S---aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~ 292 (603)
T KOG0318|consen 219 -GKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS---ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDH 292 (603)
T ss_pred -CCCccEEEEecCCCCccccEEEEEECCCCceEEEec---CCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCe
Confidence 44455577776 8999999999999997776655 599999999999999999876543 3445554 344
Q ss_pred eeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcce-eccCCce
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF-VSHLDGL 355 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v 355 (364)
|++... +|.|.+++...+.++..+.+|...|+++..+|++.+|++|+.||.|.-|+..++..-+.. .+|...|
T Consensus 293 lItVSl------~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 293 LITVSL------SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred EEEEEc------CcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence 444433 999999999999999999999999999999999999999999999999999988765443 5688888
Q ss_pred eeeeec
Q 040533 356 LSLKVS 361 (364)
Q Consensus 356 ~~~~~s 361 (364)
.+++-+
T Consensus 367 ~~~~~~ 372 (603)
T KOG0318|consen 367 KGMAAS 372 (603)
T ss_pred EEEeec
Confidence 877654
No 48
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.3e-36 Score=239.33 Aligned_cols=301 Identities=17% Similarity=0.229 Sum_probs=236.8
Q ss_pred CCCCCCCCCcEEeeCCCCCCCcceeecccCCCccEEEEEeCCeEEEEECCCC-ceeeeeeecCCCCCceEEEEcCCCCEE
Q 040533 24 SPTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENG-EVQKLLKVTGEDDFPTSISWSQDAKTL 102 (364)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l 102 (364)
.....+|.+..+++. .+.+++....++-++..+++++.|.+..+|++... +.....++.+|..+|..+.||||.++|
T Consensus 207 c~~~qip~qt~qil~--~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryL 284 (519)
T KOG0293|consen 207 CGRLQIPSQTWQILQ--DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYL 284 (519)
T ss_pred cCcccCCchhhhhHh--hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeE
Confidence 344556666666665 34455444444433345777888999999997543 344456677999999999999999999
Q ss_pred EEEecCCcEEEEecCCcceeeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc-cCcEEEEE
Q 040533 103 AVGYMASKLQLWDAETSKLIRNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH-TAEVCGLK 180 (364)
Q Consensus 103 ~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~v~~~~ 180 (364)
++++.+..+.+||+.+|.....+.. +...+.+++|.| ++..+++|+.|+++..||++... .....+- ...|.+++
T Consensus 285 laCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dla 361 (519)
T KOG0293|consen 285 LACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLA 361 (519)
T ss_pred EecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEE
Confidence 9999999999999999998877763 457899999999 99999999999999999997443 3333332 25689999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe
Q 040533 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD 260 (364)
Q Consensus 181 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 260 (364)
.++||+++++.+.|..|++++...... .. +.....+|++++.+.++++.++.- .+..+++||++..+.++.+.
T Consensus 362 it~Dgk~vl~v~~d~~i~l~~~e~~~d---r~-lise~~~its~~iS~d~k~~LvnL---~~qei~LWDl~e~~lv~kY~ 434 (519)
T KOG0293|consen 362 ITYDGKYVLLVTVDKKIRLYNREARVD---RG-LISEEQPITSFSISKDGKLALVNL---QDQEIHLWDLEENKLVRKYF 434 (519)
T ss_pred EcCCCcEEEEEecccceeeechhhhhh---hc-cccccCceeEEEEcCCCcEEEEEc---ccCeeEEeecchhhHHHHhh
Confidence 999999999999999999999765432 11 223467899999999997777754 69999999999888887776
Q ss_pred cCCC---eEEEEEcCCc-cceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCC-CEEEEEeCCCcEE
Q 040533 261 TKAQ---ICGLEWNRHH-KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG-LTVVSAAADETLR 335 (364)
Q Consensus 261 ~~~~---v~~~~~~~~~-~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~ 335 (364)
++.. +..-+|--.. .++++| ++|+.|+||+..+++++.++.+|...|.+++|+|.. .++|+||.||+|+
T Consensus 435 Ghkq~~fiIrSCFgg~~~~fiaSG------SED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIR 508 (519)
T KOG0293|consen 435 GHKQGHFIIRSCFGGGNDKFIASG------SEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIR 508 (519)
T ss_pred cccccceEEEeccCCCCcceEEec------CCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEE
Confidence 5532 4444555444 566665 669999999999999999999999999999999955 5789999999999
Q ss_pred EEEeeCC
Q 040533 336 FWEAFGP 342 (364)
Q Consensus 336 vw~~~~~ 342 (364)
||.....
T Consensus 509 IWg~~~~ 515 (519)
T KOG0293|consen 509 IWGPSDN 515 (519)
T ss_pred EecCCcc
Confidence 9987654
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.3e-34 Score=270.76 Aligned_cols=280 Identities=17% Similarity=0.273 Sum_probs=224.5
Q ss_pred cceeecccCCCcc--EEEEEeCCeEEEEECCCCc----e--eeeeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEe
Q 040533 45 DYYSNMMDWGRNN--ILAIALGLELYLWKQENGE----V--QKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWD 115 (364)
Q Consensus 45 ~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~----~--~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~ 115 (364)
.-.+.+++|++++ +++++.|+.|+||+..... . .....+ .+...+.+++|+| ++.+|++++.||.|++||
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 3347888998854 6677889999999975421 1 112223 3356799999987 478999999999999999
Q ss_pred cCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEc-CCCCEEEEEeCC
Q 040533 116 AETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS-NEGNLLASGGDD 194 (364)
Q Consensus 116 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d 194 (364)
+.+++.+..+.+|...|++++|+|.++.+|++|+.||.|++||++++.. ...+.. ...+.++.|+ +++.+|++|+.|
T Consensus 562 ~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~-~~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 562 VARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKT-KANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred CCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEec-CCCeEEEEEeCCCCCEEEEEeCC
Confidence 9999999999999999999999976789999999999999999987664 444443 4679999995 478999999999
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC------eEEEEEecC-CCeEE
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG------TCIHSVDTK-AQICG 267 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~------~~~~~~~~~-~~v~~ 267 (364)
|.|++||++... ..+..+.+|...|.++.|. ++ ..+++++ .|++|++||++.+ .++..+..+ ..+..
T Consensus 640 g~I~iwD~~~~~--~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s--~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 640 HKVYYYDLRNPK--LPLCTMIGHSKTVSYVRFV-DS-STLVSSS--TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred CeEEEEECCCCC--ccceEecCCCCCEEEEEEe-CC-CEEEEEE--CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 999999987643 2356677899999999997 44 4566665 7999999999743 456666544 56889
Q ss_pred EEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec-------------cccccceeEEeecCCCCEEEEEeCCCcE
Q 040533 268 LEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL-------------QHQTSRILELSQSPDGLTVVSAAADETL 334 (364)
Q Consensus 268 ~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-------------~~~~~~i~~i~~~~~~~~l~~~~~dg~i 334 (364)
+.|+|++.++++|.. |+.|++|+.....++..+ ..+...|.+++|+|++..|++|+.||.|
T Consensus 714 v~~s~~~~~lasgs~------D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 714 VGLSVSDGYIATGSE------TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred EEEcCCCCEEEEEeC------CCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence 999999999998854 999999998765443221 2345679999999999999999999999
Q ss_pred EEEEe
Q 040533 335 RFWEA 339 (364)
Q Consensus 335 ~vw~~ 339 (364)
+||++
T Consensus 788 ~i~~~ 792 (793)
T PLN00181 788 KILEM 792 (793)
T ss_pred EEEec
Confidence 99986
No 50
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.7e-34 Score=270.30 Aligned_cols=285 Identities=14% Similarity=0.191 Sum_probs=225.6
Q ss_pred CCeEEEEECCCCceeeee---eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc----c----eeeeeecCCCcE
Q 040533 64 GLELYLWKQENGEVQKLL---KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS----K----LIRNLEGHDKRV 132 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----~----~~~~~~~~~~~v 132 (364)
+|.+++|+....+..... .+..|.+.|.+++|+|++++||+|+.|+.|+||++... . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 567788887765543332 23368999999999999999999999999999997542 1 122233 45679
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcce
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCL 211 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 211 (364)
.+++|+|..+.+|++++.||+|++||+.+++ ....+.+|...|++++|+| ++.+|++|+.|+.|++||++... .+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~---~~ 611 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV---SI 611 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc---EE
Confidence 9999998668899999999999999998765 4667789999999999997 78899999999999999987643 35
Q ss_pred EEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-EEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCC
Q 040533 212 HRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT-CIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDG 289 (364)
Q Consensus 212 ~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 289 (364)
..+.. ...+.++.|++....++++|+ .|+.|++||+++.+ .+..+. +...|..+.|. ++.+++++.. |
T Consensus 612 ~~~~~-~~~v~~v~~~~~~g~~latgs--~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~------D 681 (793)
T PLN00181 612 GTIKT-KANICCVQFPSESGRSLAFGS--ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST------D 681 (793)
T ss_pred EEEec-CCCeEEEEEeCCCCCEEEEEe--CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC------C
Confidence 55554 367899999765557788876 89999999998765 344444 44679999997 5677777644 9
Q ss_pred CeEEEeeCCC------CceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcc-------------eec
Q 040533 290 QKLCLWKYPH------MTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGD-------------FVS 350 (364)
Q Consensus 290 ~~i~i~d~~~------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~-------------~~~ 350 (364)
+.|++||+.. ..++..+.+|...+..++|+|++.+|++|+.||.|++|+......... ...
T Consensus 682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~ 761 (793)
T PLN00181 682 NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD 761 (793)
T ss_pred CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCC
Confidence 9999999974 356788899999999999999999999999999999999765543211 123
Q ss_pred cCCceeeeeeccC
Q 040533 351 HLDGLLSLKVSPI 363 (364)
Q Consensus 351 ~~~~v~~~~~sp~ 363 (364)
+...|.+++|+|.
T Consensus 762 ~~~~V~~v~ws~~ 774 (793)
T PLN00181 762 ASQFISSVCWRGQ 774 (793)
T ss_pred CCcEEEEEEEcCC
Confidence 4567999999984
No 51
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.8e-35 Score=231.40 Aligned_cols=265 Identities=21% Similarity=0.354 Sum_probs=228.4
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccC
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~ 162 (364)
-|.+.|.++... ++.+++|++||.+++||. .|+....+.+|.++|.+++|.-.+ ...|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 688899988887 689999999999999996 588899999999999999885412 236999999999999998876
Q ss_pred cce---eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----------------------CCCcceEEeccc
Q 040533 163 NNV---TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM----------------------SSSKCLHRFRDH 217 (364)
Q Consensus 163 ~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----------------------~~~~~~~~~~~~ 217 (364)
... .....+|...|-+++..++|..+++|+.|.+|.+|+.... ....++..+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 532 2344589999999999999999999999999999993221 113457778899
Q ss_pred ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 218 RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 218 ~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
..+|.++.|++. ..+.+++ .|.+|+.||+.++..+..+.....+.++..+|...+|++|.. |..+++||.
T Consensus 260 t~~Vs~V~w~d~--~v~yS~S--wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gss------dr~irl~DP 329 (423)
T KOG0313|consen 260 TEPVSSVVWSDA--TVIYSVS--WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSS------DRHIRLWDP 329 (423)
T ss_pred ccceeeEEEcCC--CceEeec--ccceEEEEEeecccceeeeecCcceeEeecccccceeeecCC------CCceeecCC
Confidence 999999999984 4666665 999999999999999999999999999999999999999855 999999999
Q ss_pred CCCc---eeeeccccccceeEEeecCCCC-EEEEEeCCCcEEEEEeeCCC-CCcceeccCCceeeeeecc
Q 040533 298 PHMT---KWGELQHQTSRILELSQSPDGL-TVVSAAADETLRFWEAFGPS-GSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 298 ~~~~---~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~v~~~~~sp 362 (364)
+++. ...++.+|.+.|.++.|+|... +|++|+.||++++||+++.+ .+..+.+|.+.|.++.|+-
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~ 399 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE 399 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC
Confidence 8753 3457889999999999999654 68999999999999999988 8889999999999999974
No 52
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.6e-35 Score=220.62 Aligned_cols=268 Identities=18% Similarity=0.332 Sum_probs=229.5
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee--eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR--NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
..+.+|...+.+++|+.+|..|++|+.|+++.+|+++..+... ...+|.+.|-.++|+|...+.|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 3455889999999999999999999999999999998775544 34679999999999998999999999999999999
Q ss_pred cccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec
Q 040533 159 VRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
++.+++... .....+. .-+.|+|+|++++.++.|..|.+.|.++... ... ......+..++|+.++..++++.|
T Consensus 94 ~r~~k~~~~-i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~---~~~-~~~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 94 IRSGKCTAR-IETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKI---VNE-EQFKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred eccCcEEEE-eeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccce---eeh-hcccceeeeeeecCCCCEEEEecC
Confidence 998886443 3333333 4578999999999999999999999887432 222 224556788999877766777664
Q ss_pred CCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEe
Q 040533 239 GTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELS 317 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~ 317 (364)
.|+|.|.....-+++.+++.+ ....++.|+|+|+++++|.. |-.+.+||+...-+++.+..+.-+|+.+.
T Consensus 168 ---lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA------DAlvSLWD~~ELiC~R~isRldwpVRTlS 238 (313)
T KOG1407|consen 168 ---LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA------DALVSLWDVDELICERCISRLDWPVRTLS 238 (313)
T ss_pred ---CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc------cceeeccChhHhhhheeeccccCceEEEE
Confidence 799999999999999988755 67899999999999999965 99999999999999999999999999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccCC
Q 040533 318 QSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPIR 364 (364)
Q Consensus 318 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~~ 364 (364)
||-||++||+||+|..|-|=+++++..+..+. +.++...|+|+|.|
T Consensus 239 FS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 239 FSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKR 284 (313)
T ss_pred eccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCC
Confidence 99999999999999999999999999988765 68899999999986
No 53
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-34 Score=220.04 Aligned_cols=264 Identities=17% Similarity=0.201 Sum_probs=222.1
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeC--CCcEEEEEcccC
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ--DKSIINHDVRVS 162 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~ 162 (364)
.....|.++.|+++|..|++++.|..++|||..+++.++++..+.-.+..++|.. ..+.++.++. |.+|+..++.+.
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecC
Confidence 3477899999999999999999999999999999999999998888899999987 5556666655 889999999876
Q ss_pred cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC
Q 040533 163 NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 242 (364)
+ .++.+.+|...|++++.+|-+..+++++.|++|++||++..+. ...+. ...-..++|+|+| .++|++. ..
T Consensus 91 k-ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c---qg~l~--~~~~pi~AfDp~G-LifA~~~--~~ 161 (311)
T KOG1446|consen 91 K-YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC---QGLLN--LSGRPIAAFDPEG-LIFALAN--GS 161 (311)
T ss_pred c-eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC---ceEEe--cCCCcceeECCCC-cEEEEec--CC
Confidence 6 5889999999999999999889999999999999999986433 33332 2223458899998 6777765 34
Q ss_pred CeEEEEECCCC--eEEEEEec----CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccce---
Q 040533 243 GCIKIWNVQKG--TCIHSVDT----KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI--- 313 (364)
Q Consensus 243 ~~i~i~d~~~~--~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--- 313 (364)
..|++||++.- .+..++.. ..+.+.+.|+|+|++++.+.. .+.+++.|.-+|..+..+..+...-
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~------~s~~~~lDAf~G~~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN------ASFIYLLDAFDGTVKSTFSGYPNAGNLP 235 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC------CCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence 49999999873 34444432 367899999999999998865 8999999999999988887765432
Q ss_pred eEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec-cCCceeeeeeccCC
Q 040533 314 LELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS-HLDGLLSLKVSPIR 364 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~v~~~~~sp~~ 364 (364)
....|+||++++++|+.||+|.+|+++++..+..+.+ +.+++.++.|+|.+
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~ 287 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY 287 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce
Confidence 5788999999999999999999999999999999988 68999999999974
No 54
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.9e-36 Score=224.56 Aligned_cols=267 Identities=19% Similarity=0.328 Sum_probs=241.3
Q ss_pred eeecCCCCCceEEEEcC---CCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEE
Q 040533 81 LKVTGEDDFPTSISWSQ---DAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINH 157 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 157 (364)
+...+|..+|..++||| +|-+|++++.||.-.+-+-++|..+.++.+|.+.|++...+. +....++++.|-+-++|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~-na~~aasaaadftakvw 86 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVW 86 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhh
Confidence 44569999999999996 888999999999999999999999999999999999999987 78888999999999999
Q ss_pred EcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEee
Q 040533 158 DVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 158 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
|.-++..+ ..+ .|..-|.+++|+.|.++|++|+.+..+++||++..+. +...+.+|.+.|..+.|+.....+|.+
T Consensus 87 ~a~tgdel-hsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A--pp~E~~ghtg~Ir~v~wc~eD~~iLSS- 161 (334)
T KOG0278|consen 87 DAVTGDEL-HSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA--PPKEISGHTGGIRTVLWCHEDKCILSS- 161 (334)
T ss_pred hhhhhhhh-hhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCC--CchhhcCCCCcceeEEEeccCceEEee-
Confidence 99888753 333 6888999999999999999999999999999987653 466778999999999999888666665
Q ss_pred cCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEe
Q 040533 238 GGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELS 317 (364)
Q Consensus 238 ~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~ 317 (364)
. .|++||+||.++++.++++....+|+++.++++|+++.++. .+.|.+||..+..+++.++.. ..|.+..
T Consensus 162 a--dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-------gssV~Fwdaksf~~lKs~k~P-~nV~SAS 231 (334)
T KOG0278|consen 162 A--DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-------GSSVKFWDAKSFGLLKSYKMP-CNVESAS 231 (334)
T ss_pred c--cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-------CceeEEeccccccceeeccCc-ccccccc
Confidence 3 79999999999999999999999999999999999998876 789999999999999887654 4588999
Q ss_pred ecCCCCEEEEEeCCCcEEEEEeeCCCCCcce-eccCCceeeeeeccC
Q 040533 318 QSPDGLTVVSAAADETLRFWEAFGPSGSGDF-VSHLDGLLSLKVSPI 363 (364)
Q Consensus 318 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~sp~ 363 (364)
.+|+..++++|++|+.++.||+.+++.+..+ ++|.++|.||.|||.
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD 278 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC
Confidence 9999999999999999999999999999886 799999999999995
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-35 Score=253.92 Aligned_cols=265 Identities=17% Similarity=0.327 Sum_probs=233.8
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN 164 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 164 (364)
.....|..++|+|...+++++-.+|.|++||.+-+.++..|..|.++|..++|+| ...++++|+.|..|++|+..+.++
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEeccccee
Confidence 4567899999999999999999999999999999999999999999999999999 999999999999999999997775
Q ss_pred eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 165 VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
+.++.+|-+.|..+.|++.-.++++++.|.+|+||+..+ .+++..+.+|+..|.|..|+|.. .++++++ .|.+
T Consensus 86 -lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs---r~~iavltGHnHYVMcAqFhptE-DlIVSaS--LDQT 158 (1202)
T KOG0292|consen 86 -LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS---RKCIAVLTGHNHYVMCAQFHPTE-DLIVSAS--LDQT 158 (1202)
T ss_pred -hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC---CceEEEEecCceEEEeeccCCcc-ceEEEec--ccce
Confidence 778889999999999999999999999999999999655 56799999999999999999976 6788876 9999
Q ss_pred EEEEECCCCe-----------------------------EEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEE
Q 040533 245 IKIWNVQKGT-----------------------------CIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 245 i~i~d~~~~~-----------------------------~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i 294 (364)
|++||+..-+ ..+.++++ ..|+-++|+|.-..+++| ++|..|++
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG------~DDRqVKl 232 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG------ADDRQVKL 232 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec------CCcceeeE
Confidence 9999985311 01122223 458889999999999988 56999999
Q ss_pred eeCCCCce--eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 295 WKYPHMTK--WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 295 ~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|.+...+. +.+.++|.+.|.++-|+|...++++.|+|++|+|||+...+.++++....+..+.++-+|.
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~ 303 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPE 303 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCC
Confidence 99976554 3467899999999999999999999999999999999999999999877888888888874
No 56
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-34 Score=213.43 Aligned_cols=271 Identities=19% Similarity=0.286 Sum_probs=228.9
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+.++.++.+ ..++++.|.+|++|+...+.+.+. +.+|..+|..++.+.|...+++|+.|..+.+||+++|+..+.+
T Consensus 20 V~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt--YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~ 97 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT--YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF 97 (307)
T ss_pred eEEEEEccCCCEEEEcCCCceEEeecccccceeee--ecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec
Confidence 666667654 478889999999999999987554 4599999999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc-ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN-NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
.+|...|+.++|+. +...+++|+.|.++++||.++.. .+++.+......|.++..+ +..+++|+.||+++.||++.
T Consensus 98 rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~ 174 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRK 174 (307)
T ss_pred ccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeec
Confidence 99999999999998 88999999999999999998764 3567777788889999876 45799999999999999998
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCC---eEEEEEcCCccceeeec
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ---ICGLEWNRHHKEILSGH 281 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~ 281 (364)
+.. ... ....+|++++|+++++..++.. .|+++++.|-.+|+.+..+..+.. -...+++.....+++|
T Consensus 175 G~l---~sD--y~g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sg- 245 (307)
T KOG0316|consen 175 GTL---SSD--YFGHPITSVSFSKDGNCSLASS---LDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSG- 245 (307)
T ss_pred cee---ehh--hcCCcceeEEecCCCCEEEEee---ccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEec-
Confidence 643 222 2457899999999998777744 799999999999999988876532 4556777777777777
Q ss_pred cCCccCCCCeEEEeeCCCCceeeeccccccc-eeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQHQTSR-ILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
++||.+++||+.....+..+..+... |+++.++|.-.-++++.. +.+.+|.
T Consensus 246 -----SEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 246 -----SEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred -----cCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence 56999999999999999999988887 899999998877777754 4455664
No 57
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=235.95 Aligned_cols=263 Identities=18% Similarity=0.310 Sum_probs=226.9
Q ss_pred CCCCCceEEEEcCCCCE-EEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 85 GEDDFPTSISWSQDAKT-LAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
...+.|.+++|+|...+ +|+.+ .-.+.||+..+....+++......|.+++|.. +|.+|++|+..|.|++||+.+ +
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~-r 100 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKS-R 100 (487)
T ss_pred cccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEEecccc-H
Confidence 34568999999996543 44443 46799999998888887877889999999998 999999999999999999654 4
Q ss_pred ceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 242 (364)
..+..+.+|+.++..+.|+| ++..+++|++|+.+++||+.+.. ....+.+|.+.|.+.+|+|....++++|+ .|
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---v~~~l~~htDYVR~g~~~~~~~hivvtGs--YD 175 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---VQAELSGHTDYVRCGDISPANDHIVVTGS--YD 175 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---EEEEecCCcceeEeeccccCCCeEEEecC--CC
Confidence 46788899999999999999 55678888999999999988754 35678899999999999999989999987 99
Q ss_pred CeEEEEECCCC-eEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-eeeccccccceeEEeecC
Q 040533 243 GCIKIWNVQKG-TCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-WGELQHQTSRILELSQSP 320 (364)
Q Consensus 243 ~~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~ 320 (364)
|.|++||++.. ..+.++.++.+|..+.+-|.|..++++. .+.+++||+.+|.. +..+..|...|+|+++..
T Consensus 176 g~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-------Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 176 GKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-------GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS 248 (487)
T ss_pred ceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-------CCeEEEEEecCCceehhhhhcccceEEEEEeec
Confidence 99999999987 8889999999999999999999998875 78999999996554 445555999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 321 DGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 321 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++..|++|+-|+.|++||+.+-+.+..+. ..++|.+++.||.
T Consensus 249 ~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~d 290 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPD 290 (487)
T ss_pred CCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCC
Confidence 99999999999999999988777666553 5789999999983
No 58
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-34 Score=232.75 Aligned_cols=279 Identities=19% Similarity=0.317 Sum_probs=236.6
Q ss_pred eeecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|. .-+++++.-.+.+|+..+....+.+. ...+.++++.|-.||++||+|...|.|+|||..+...++.
T Consensus 28 ~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~s--rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFS--RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred cceeEecCCCCCCceEEecccEEEEEecchhhhhhhHH--hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence 3788888884 46677777899999998877655332 4577899999999999999999999999999887778889
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 203 (364)
+.+|+.+|..+.|+|+++..|++|+.|+.+++||+.+... ...+.+|++.|.|.+|+| ++..+++|+.||.|++||++
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 9999999999999998999999999999999999987763 667889999999999999 45689999999999999998
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEe-cCCCeEEEEEcCCccceeeec
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVD-TKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 281 (364)
... ..+..+ .|..+|..+.+-|.| .++++++ ...+++||+.+| +.+..+. ++..|+|+.+..++..|+++.
T Consensus 185 ~~~--~~v~el-nhg~pVe~vl~lpsg-s~iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 185 SLT--SRVVEL-NHGCPVESVLALPSG-SLIASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred cCC--ceeEEe-cCCCceeeEEEcCCC-CEEEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc
Confidence 753 335555 489999999999998 5666665 578999999965 4444444 778899999999999999886
Q ss_pred cCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
. |+.+++||+.+.+.+..+. ..++|.+++.+|+++.++.|-.||.+.+=+....
T Consensus 258 L------D~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 258 L------DRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred c------ccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 5 9999999999999888876 4578999999999999999999999877654433
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-34 Score=243.68 Aligned_cols=286 Identities=21% Similarity=0.365 Sum_probs=245.8
Q ss_pred eCCCCCCCcceeecccCCCccE-EEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEe
Q 040533 37 LDAPNLRNDYYSNMMDWGRNNI-LAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWD 115 (364)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 115 (364)
++.+.++.+ +..++++.+++ ++.+.++.+++|+..+.++...+. .+.+.+..|-|.++++++|..+|.+.+||
T Consensus 367 i~~~GHR~d--VRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~----~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSD--VRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT----CGYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhh--eeEEEeecCceeeeecCCCcEEEEEccCcceeEEec----cccEEEEEecCCCceEEEeccCCceEEEE
Confidence 445566666 66777777764 455567899999999998866665 33788999999999999999999999999
Q ss_pred cCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc----eee-------eeecccCcEEEEEEcCC
Q 040533 116 AETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN----VTS-------RINAHTAEVCGLKWSNE 184 (364)
Q Consensus 116 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~-------~~~~~~~~v~~~~~~~~ 184 (364)
+.+...+.++++|.+.+++++.+| ++..+++|+.|.+|++||...-.. ..+ ..-.....|.|+++|||
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd 519 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD 519 (888)
T ss_pred eehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC
Confidence 999999999999999999999999 999999999999999999752211 001 11124567999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCC
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKA 263 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~ 263 (364)
+++|+++--|.+|++|-+.+. +....+.+|.-||.|+..+|++ .++++|+ .|..|++|-+.-|.+.+++- |+.
T Consensus 520 gk~LaVsLLdnTVkVyflDtl---KFflsLYGHkLPV~smDIS~DS-klivTgS--ADKnVKiWGLdFGDCHKS~fAHdD 593 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTL---KFFLSLYGHKLPVLSMDISPDS-KLIVTGS--ADKNVKIWGLDFGDCHKSFFAHDD 593 (888)
T ss_pred CcEEEEEeccCeEEEEEecce---eeeeeecccccceeEEeccCCc-CeEEecc--CCCceEEeccccchhhhhhhcccC
Confidence 999999999999999998775 4477788999999999999998 6777876 89999999999999988864 557
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
.|.++.|.|....++++ +.|+.|+-||-...+.+..+.+|...|++++.+|+|.+++++|.|.+|++|....
T Consensus 594 Svm~V~F~P~~~~FFt~------gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTC------GKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ceeEEEEcccceeEEEe------cCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 89999999988888776 5599999999999999999999999999999999999999999999999998665
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3e-35 Score=228.61 Aligned_cols=278 Identities=20% Similarity=0.337 Sum_probs=241.6
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeec------CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVT------GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET 118 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 118 (364)
++-+..|+|++ +++++.||.|.+||..+|+..+-..+. -+.++|.|+.||.|..+||+|+.||.|+||.+++
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 45566778864 778889999999999999876554433 4678999999999999999999999999999999
Q ss_pred cceeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeE
Q 040533 119 SKLIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLV 197 (364)
Q Consensus 119 ~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 197 (364)
|.+++.+. +|...|+|+.|+. ++..+++++.|.++++.-+.+++. ++.+.+|.+.|+...|.++|..+++++.||+|
T Consensus 295 G~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 295 GQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHIISASSDGTV 372 (508)
T ss_pred chHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEEEecCCccE
Confidence 99999987 8999999999999 899999999999999999998875 77789999999999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEecc--cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec----CCCeEEEEEc
Q 040533 198 HVWDHSKMSSSKCLHRFRD--HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT----KAQICGLEWN 271 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~v~~~~~~ 271 (364)
++|+..+. .++.+++. ...+|.++-.-|.++.-++.+. ..+++.+.++. |+.++++.. .+...+.+.+
T Consensus 373 kvW~~Ktt---eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 373 KVWHGKTT---ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN--RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred EEecCcch---hhhhhccCCCCcccceeEEEcCCCCceEEEEc--CCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence 99996654 44555543 4567888888887766666654 78999999985 778888754 3567888999
Q ss_pred CCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 272 RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
|.|.++++. ++|+.++.|...+|+....+.-|...+..++-+|..+.||+-++||.+++|.
T Consensus 447 pkGewiYci------gED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 447 PKGEWIYCI------GEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCCcEEEEE------ccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999987 4599999999999999999999999999999999999999999999999995
No 61
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=6.5e-34 Score=228.75 Aligned_cols=275 Identities=18% Similarity=0.307 Sum_probs=236.8
Q ss_pred eecccCCC--ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGR--NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~--~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+.+++..+ +.+++++.|..+.++|...++...+ ++||...|+.+.++|+...+++++.|-.|+||...........
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~--~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQILAT--LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecchhhhhhh--ccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 45555555 5688999999999999999887544 5599999999999999999999999999999999888778888
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec-ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA-HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
..|.++|+.+..+| +++||++++.||+..+.|++++..+...... ..-.+++.+|+|||.+|.+|..||.|++||+..
T Consensus 300 ~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred ccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 89999999999999 9999999999999999999988865444321 234589999999999999999999999999887
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--CCeEEEEEcCCccceeeecc
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--AQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~ 282 (364)
.. .+..|.+|.++|..++|+.+| +.++++. .|+.|++||++.-+...++... .++.++.|.+.|.+|+.+
T Consensus 379 ~~---~~a~Fpght~~vk~i~FsENG-Y~Lat~a--dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-- 450 (506)
T KOG0289|consen 379 QT---NVAKFPGHTGPVKAISFSENG-YWLATAA--DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-- 450 (506)
T ss_pred cc---ccccCCCCCCceeEEEeccCc-eEEEEEe--cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee--
Confidence 65 488899999999999999999 7777766 8999999999998888887655 459999999999999988
Q ss_pred CCccCCCCeEEEeeCC----CCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 283 FSSSGDGQKLCLWKYP----HMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 283 ~~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
...++||-.. ++.++..+..|.+..+.+.|....++++++|.|..++++.+
T Consensus 451 ------g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 451 ------GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ------cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 4445555544 67788888889989999999999999999999999888754
No 62
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-34 Score=215.19 Aligned_cols=285 Identities=16% Similarity=0.270 Sum_probs=234.6
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
++.+.++.+ -+++++.|....+|-..+|+. +-++.+|.+.|.|+..+.+.+.|++|+.|.++++||+++|+++..+
T Consensus 13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGer--lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~ 90 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGER--LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW 90 (327)
T ss_pred cceEEecCCCcEEEEecCCCCceEEEecCCce--eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe
Confidence 555666654 377888999999999888875 4556699999999999999999999999999999999999999998
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeC-----CCcEEEEEcccCc------ceeeeeecccCcEEEEEEcCCCCEEEEEeCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQ-----DKSIINHDVRVSN------NVTSRINAHTAEVCGLKWSNEGNLLASGGDD 194 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 194 (364)
+ ...+|..+.|++ ++++++.... .+.|.++|++... .+...+..+.+.++.+-|.|-++.|++|.+|
T Consensus 91 k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~ 168 (327)
T KOG0643|consen 91 K-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED 168 (327)
T ss_pred e-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCC
Confidence 8 678899999999 8888777654 3679999988322 2345566778899999999999999999999
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCc
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHH 274 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~ 274 (364)
|.|..||++++. +.+...+.|...|+.++++|+. .++++++ .|.+-++||.++-+.++++....++++.+++|..
T Consensus 169 G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s--~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 169 GSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDR-TYFITGS--KDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLL 243 (327)
T ss_pred CcEEEEEcccCc--eeeechhhhccccccccccCCc-ceEEecc--cCccceeeeccceeeEEEeeecccccceeccccc
Confidence 999999998763 3455667789999999999998 4566655 9999999999999999999999999999999998
Q ss_pred cceeeeccCC------ccCCCC--eEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 275 KEILSGHGFS------SSGDGQ--KLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 275 ~~l~~~~~~~------~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
..++.|.+.. +....| .-++|++-..+.+..+++|-++|++++|+|+|+..++|++||.|++..+..
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 8888875421 001111 123444444556677889999999999999999999999999999987654
No 63
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.5e-32 Score=240.26 Aligned_cols=266 Identities=16% Similarity=0.239 Sum_probs=205.5
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECCCCcee----------e-eeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEE
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQENGEVQ----------K-LLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLW 114 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~----------~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw 114 (364)
.+...+|+..++++++.+.....|+...+... . ...+.+|.+.|.+++|+| ++++|++|+.||+|++|
T Consensus 24 ~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIW 103 (493)
T PTZ00421 24 TPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGW 103 (493)
T ss_pred ccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence 35556677666777776666666765443211 1 123558999999999999 88999999999999999
Q ss_pred ecCCc-------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCE
Q 040533 115 DAETS-------KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL 187 (364)
Q Consensus 115 ~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 187 (364)
|+.++ +.+..+.+|...|.+++|+|..+++|++++.|++|++||++++.. ...+..|...|.+++|+|++.+
T Consensus 104 di~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-~~~l~~h~~~V~sla~spdG~l 182 (493)
T PTZ00421 104 GIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA-VEVIKCHSDQITSLEWNLDGSL 182 (493)
T ss_pred ecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-EEEEcCCCCceEEEEEECCCCE
Confidence 99765 346678899999999999994457999999999999999987764 6677889999999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCCCCcceEEecccccc-eeEEEEccCCCcEEEeec-CCCCCeEEEEECCCCe-EEEEEec--C
Q 040533 188 LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAA-VKALAWCPYQFNVLASGG-GTQDGCIKIWNVQKGT-CIHSVDT--K 262 (364)
Q Consensus 188 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~-~~~~~~~--~ 262 (364)
|++++.|+.|++||+++.. .+..+.+|.+. +..+.|.+++..++++|. ++.|+.|++||+++.. +...... .
T Consensus 183 Latgs~Dg~IrIwD~rsg~---~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~ 259 (493)
T PTZ00421 183 LCTTSKDKKLNIIDPRDGT---IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS 259 (493)
T ss_pred EEEecCCCEEEEEECCCCc---EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCC
Confidence 9999999999999988753 46777777664 456789988866666552 2358999999998754 3333332 2
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc-cccceeEEeecCC
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH-QTSRILELSQSPD 321 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~ 321 (364)
..+....|++++..++++. ..|+.|++||+.+++.+..... +..++..++|.|.
T Consensus 260 ~~~~~~~~d~d~~~L~lgg-----kgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 260 SALFIPFFDEDTNLLYIGS-----KGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CceEEEEEcCCCCEEEEEE-----eCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 4466678999999888763 2399999999999887766543 4456788888885
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.8e-33 Score=222.54 Aligned_cols=279 Identities=19% Similarity=0.358 Sum_probs=227.5
Q ss_pred CcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCC---CEEEEEecCCcEEEEecCCcc
Q 040533 44 NDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDA---KTLAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~ 120 (364)
++-.+.++.-.+..+++++.||.+++||..... ...+.+|.++|.+++|.-.. ..+++++.|.++++|..+.++
T Consensus 104 hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~---~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 104 HDDWVSSVKGASKWILTGSYDGTSRIWDLKGKS---IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred chhhhhhhcccCceEEEeecCCeeEEEecCCce---EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 444577787777889999999999999987554 34445999999988885433 369999999999999988774
Q ss_pred ee----eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC------------------------cceeeeeecc
Q 040533 121 LI----RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS------------------------NNVTSRINAH 172 (364)
Q Consensus 121 ~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------------------------~~~~~~~~~~ 172 (364)
.. ....+|...|-+++..+ ++..+++|+.|..|.+|+.... +.++..+.+|
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 33 33458999999999999 9999999999999999993211 1245678899
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 173 TAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
..+|.++.|++ ...+++++.|.+|+.||+..+.. ..++. .+..+.++..+|.. .++++|+ .|..+++||.++
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~---~~~~~-~~ksl~~i~~~~~~-~Ll~~gs--sdr~irl~DPR~ 331 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL---KSTLT-TNKSLNCISYSPLS-KLLASGS--SDRHIRLWDPRT 331 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccc---eeeee-cCcceeEeeccccc-ceeeecC--CCCceeecCCCC
Confidence 99999999998 56899999999999999987654 44443 35678999999966 7888876 899999999988
Q ss_pred Ce---EEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc-eeeeccccccceeEEeecCCCCEEEE
Q 040533 253 GT---CIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT-KWGELQHQTSRILELSQSPDGLTVVS 327 (364)
Q Consensus 253 ~~---~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~ 327 (364)
+. ..+++. +.+.|.++.|+|...+.++.. +.|+++++||+++.+ ++..+.+|...|.++.|+ ++.++++
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~-----S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvS 405 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSG-----SYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVS 405 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEE-----ecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEe
Confidence 53 233443 457799999999988877654 449999999999887 999999999999999997 5569999
Q ss_pred EeCCCcEEEEEee
Q 040533 328 AAADETLRFWEAF 340 (364)
Q Consensus 328 ~~~dg~i~vw~~~ 340 (364)
|+.|++|+|+.-.
T Consensus 406 GGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 406 GGADNKLRIFKGS 418 (423)
T ss_pred ccCcceEEEeccc
Confidence 9999999998643
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=246.39 Aligned_cols=280 Identities=21% Similarity=0.338 Sum_probs=242.5
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
.+.+..|.++.+++++.+..|.+||..++..... .+.+|.+.|.++++..-+.+|++|+.|.++++||..+|++...+.
T Consensus 210 ~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~-~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~ 288 (537)
T KOG0274|consen 210 VVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILT-RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ 288 (537)
T ss_pred hhhhheeecCeEEecCCCceeEEeecccceEEEe-eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec
Confidence 4666777777888999999999999998876433 366999999999998778899999999999999999999999999
Q ss_pred cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 040533 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206 (364)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 206 (364)
+|.+.|.++.. .+..+++|+.|.+|++|+++++.. +..+.+|..+|.++..+ +.++++|+.|++|++||+..
T Consensus 289 gh~stv~~~~~---~~~~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~-- 360 (537)
T KOG0274|consen 289 GHTSSVRCLTI---DPFLLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT-- 360 (537)
T ss_pred CCCceEEEEEc---cCceEeeccCCceEEEEeccCcce-EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh--
Confidence 99999999988 678889999999999999997764 67777799999999987 77999999999999999875
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEecCCCeEEEEEcCCccceeeeccCCc
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDTKAQICGLEWNRHHKEILSGHGFSS 285 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 285 (364)
.+++..+.+|...|.++.+.+. ..+.+|+ .|++|++||+++. +++.++.++..+. -.....+++++++..
T Consensus 361 -~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs--~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~~a--- 431 (537)
T KOG0274|consen 361 -GKCLKSLSGHTGRVYSLIVDSE--NRLLSGS--LDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSSSA--- 431 (537)
T ss_pred -ceeeeeecCCcceEEEEEecCc--ceEEeee--eccceEeecCCchhhhhhhhcCCcccc-cccccccceeEeccc---
Confidence 5679999999999999988775 5666665 8999999999999 8999988776544 334456777777754
Q ss_pred cCCCCeEEEeeCCCCceeeeccc-cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 286 SGDGQKLCLWKYPHMTKWGELQH-QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 286 ~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
|+.|++||..+++++..+.+ |...|+.+++. ...+++++.||.+++||+++++....+.
T Consensus 432 ---D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 432 ---DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred ---cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhh
Confidence 99999999999999999998 67888888886 4678999999999999999998877663
No 66
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-34 Score=214.18 Aligned_cols=263 Identities=20% Similarity=0.358 Sum_probs=216.4
Q ss_pred eEEEEcCC-CCEEEEEe-------cCCcEEEEecCCcceeeeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 91 TSISWSQD-AKTLAVGY-------MASKLQLWDAETSKLIRNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 91 ~~~~~s~~-~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
.++.|||- .++||++. ..|++.|.++...+-+.... .-...+..++|++...+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57889992 33444432 36899999987554444433 2457899999999888999999999999999988
Q ss_pred cCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 161 VSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
....++..++.|...|.++.|++ .+..+++++.|++|++|+...+ +.+.++.+|+..|...+|+|....++++++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~---~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S- 167 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP---NSVQTFNGHNSCIYQAAFSPHIPNLFASAS- 167 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC---cceEeecCCccEEEEEecCCCCCCeEEEcc-
Confidence 77778899999999999999999 5668888899999999996654 459999999999999999999999999987
Q ss_pred CCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC-ceeeeccccccceeEEe
Q 040533 240 TQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM-TKWGELQHQTSRILELS 317 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~i~ 317 (364)
.|+++++||++..-....++. ..++.++.|+.-...+++.. +.|+.|+.||+++. .++.++.+|.-.|+.+.
T Consensus 168 -gd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg-----~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk 241 (311)
T KOG0277|consen 168 -GDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATG-----GVDNLVRGWDIRNLRTPLFELNGHGLAVRKVK 241 (311)
T ss_pred -CCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEec-----CCCceEEEEehhhccccceeecCCceEEEEEe
Confidence 799999999987433333554 46899999999777666543 45999999999874 56788999999999999
Q ss_pred ecCCC-CEEEEEeCCCcEEEEEeeCC-CCCcceeccCCceeeeeeccC
Q 040533 318 QSPDG-LTVVSAAADETLRFWEAFGP-SGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 318 ~~~~~-~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|||.. ..||+++.|-+++|||...+ ..+.+...|..-|.++.||+-
T Consensus 242 ~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 242 FSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF 289 (311)
T ss_pred cCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc
Confidence 99954 58999999999999999854 445666788999999999874
No 67
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.9e-32 Score=239.59 Aligned_cols=268 Identities=19% Similarity=0.267 Sum_probs=203.2
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCc----------cee---eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEE
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETS----------KLI---RNLEGHDKRVATASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----------~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
.|.....++++..+++++.+.....|+...+ +.. ..+.+|.+.|.+++|+|.++++|++|+.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3444555556555555555555555554332 221 246789999999999996778999999999999
Q ss_pred EEEcccCc------ceeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEcc
Q 040533 156 NHDVRVSN------NVTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP 228 (364)
Q Consensus 156 ~~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 228 (364)
+||+.... ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++. +.+..+..|...|.+++|+|
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg---~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG---KAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC---eEEEEEcCCCCceEEEEEEC
Confidence 99997643 2355678999999999999975 69999999999999998764 44777888999999999999
Q ss_pred CCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC--CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-eee
Q 040533 229 YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA--QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-WGE 305 (364)
Q Consensus 229 ~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~ 305 (364)
++ .++++++ .|+.|++||+++++.+..+..+. ....+.|.+++..++++.. +.+.|+.|++||+++... +..
T Consensus 179 dG-~lLatgs--~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~--s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 179 DG-SLLCTTS--KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGC--SKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred CC-CEEEEec--CCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEec--CCCCCCeEEEEeCCCCCCceeE
Confidence 98 5666765 89999999999999888876553 3457789998877765431 124489999999987553 333
Q ss_pred cccc-ccceeEEeecCCCCEEEEEe-CCCcEEEEEeeCCCCCccee-ccCCceeeeeeccCC
Q 040533 306 LQHQ-TSRILELSQSPDGLTVVSAA-ADETLRFWEAFGPSGSGDFV-SHLDGLLSLKVSPIR 364 (364)
Q Consensus 306 ~~~~-~~~i~~i~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~sp~~ 364 (364)
...+ ...+....|++++++|++++ .||.|++||+.+++...... .+..++.+++|.|.|
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 3323 34566678999999999887 59999999999887655443 346678899999875
No 68
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.9e-34 Score=246.48 Aligned_cols=245 Identities=18% Similarity=0.301 Sum_probs=199.8
Q ss_pred eec-CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC--------------------------------c---------
Q 040533 82 KVT-GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET--------------------------------S--------- 119 (364)
Q Consensus 82 ~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~--------------------------------~--------- 119 (364)
.+. .|.+.|.++.||+||+|||+|+.||.|+||.+.. .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 344 8999999999999999999999999999998754 0
Q ss_pred -------------------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEE
Q 040533 120 -------------------KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLK 180 (364)
Q Consensus 120 -------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 180 (364)
+++..+.+|...|..+.|+ ..++|++++.|.+|++|++....+ +..+ .|...|+|++
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~C-L~~F-~HndfVTcVa 416 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKEC-LKVF-SHNDFVTCVA 416 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcce-eeEE-ecCCeeEEEE
Confidence 1123456799999999999 578999999999999999986665 4544 7999999999
Q ss_pred EcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEE
Q 040533 181 WSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV 259 (364)
Q Consensus 181 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 259 (364)
|+| |.+++++|+-||.++||++...+ +..+..-..-|++++|.|+|+..++ |+.+|.+++|++...+.....
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~----Vv~W~Dl~~lITAvcy~PdGk~avI---Gt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKK----VVDWNDLRDLITAVCYSPDGKGAVI---GTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCe----eEeehhhhhhheeEEeccCCceEEE---EEeccEEEEEEccCCeEEEee
Confidence 999 88999999999999999987532 4444455688999999999966555 459999999999987776554
Q ss_pred ec---------CCCeEEEEEcCCccc-eeeeccCCccCCCCeEEEeeCCCCceeeecccccc--ceeEEeecCCCCEEEE
Q 040533 260 DT---------KAQICGLEWNRHHKE-ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS--RILELSQSPDGLTVVS 327 (364)
Q Consensus 260 ~~---------~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~ 327 (364)
.. +..|+++.+.|...- +++. +.|..|+|||.++..++..++++.. .-....|+.||++|++
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT------SnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs 563 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVT------SNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS 563 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEe------cCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE
Confidence 21 236999999986652 4443 2399999999999999999887543 3356789999999999
Q ss_pred EeCCCcEEEEEeeCCC
Q 040533 328 AAADETLRFWEAFGPS 343 (364)
Q Consensus 328 ~~~dg~i~vw~~~~~~ 343 (364)
+++|..|++|++....
T Consensus 564 ~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 564 ASEDSWVYIWKNDSFN 579 (712)
T ss_pred eecCceEEEEeCCCCc
Confidence 9999999999985543
No 69
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-33 Score=243.34 Aligned_cols=280 Identities=18% Similarity=0.299 Sum_probs=238.2
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+..++|+|.+ ++++--.|.|.+||..-+.+.. .+..|.++|..++|+|++.++++|+.|-.|+||+.++.+++.++
T Consensus 12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tli~--rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL 89 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID--RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL 89 (1202)
T ss_pred ccceecCCCCCEEEEeecCceeeeehhhhhhHHh--hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence 6778999965 7777789999999998777644 45599999999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.+|-..|..+.|++ .-..++++|.|.+|+||+..++.. +..+.+|+..|.|..|+|...++++++-|-+|++||+...
T Consensus 90 ~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~-iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKC-IAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred ccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCce-EEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence 99999999999999 899999999999999999998775 8889999999999999998899999999999999998532
Q ss_pred CCC--------------------------cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE--E
Q 040533 206 SSS--------------------------KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI--H 257 (364)
Q Consensus 206 ~~~--------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~ 257 (364)
... -.-+.+.+|...|+-++|+|.- -++++|+ .|..|++|.+...+.- .
T Consensus 168 Rkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~--DDRqVKlWrmnetKaWEvD 244 (1202)
T KOG0292|consen 168 RKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGA--DDRQVKLWRMNETKAWEVD 244 (1202)
T ss_pred hccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecC--CcceeeEEEeccccceeeh
Confidence 110 1123456899999999999987 4777776 9999999998654322 2
Q ss_pred EE-ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEE
Q 040533 258 SV-DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRF 336 (364)
Q Consensus 258 ~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~v 336 (364)
+. .+.+.|.++-|+|....+++. ++|+.|++||+...+.+.+++...+..+.++-+|..+++++| .|+-+.|
T Consensus 245 tcrgH~nnVssvlfhp~q~lIlSn------sEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~V 317 (1202)
T KOG0292|consen 245 TCRGHYNNVSSVLFHPHQDLILSN------SEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIV 317 (1202)
T ss_pred hhhcccCCcceEEecCccceeEec------CCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEE
Confidence 22 345789999999999999887 569999999999999999998777888999999999877765 4555667
Q ss_pred EEeeC
Q 040533 337 WEAFG 341 (364)
Q Consensus 337 w~~~~ 341 (364)
|.++.
T Consensus 318 FkleR 322 (1202)
T KOG0292|consen 318 FKLER 322 (1202)
T ss_pred EEEcc
Confidence 77764
No 70
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=3.8e-33 Score=229.00 Aligned_cols=289 Identities=15% Similarity=0.239 Sum_probs=229.3
Q ss_pred eeecccCCC--ccEEEEEeCCeEEEEECCCCcee--eeeee-cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 47 YSNMMDWGR--NNILAIALGLELYLWKQENGEVQ--KLLKV-TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 47 ~~~~~~~~~--~~~~~~~~~~~i~iw~~~~~~~~--~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
.+.+++..| .++++++.|..|++||+...... ....+ +.....|.++.|++.|..|++.+.....+|+|-...+.
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~ 248 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEI 248 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCcee
Confidence 356666666 46899999999999999865321 11111 23355799999999999988888888999999764443
Q ss_pred eee------------eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee-----cccCcEEEEEEcCC
Q 040533 122 IRN------------LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN-----AHTAEVCGLKWSNE 184 (364)
Q Consensus 122 ~~~------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~ 184 (364)
... .++|...++|.+|+|.+.+.+++++.||++++||+.........+. +..-+++.++|+++
T Consensus 249 ~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd 328 (641)
T KOG0772|consen 249 VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD 328 (641)
T ss_pred eeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC
Confidence 332 3578899999999998899999999999999999986654333332 23457899999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc--ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-EEEEEe-
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA--AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT-CIHSVD- 260 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~- 260 (364)
+++||+|..||.|.+|+............-.+|.. .|+|++|+++|++|+. -+ .|+++++||++..+ ++....
T Consensus 329 g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS-Rg--~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 329 GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS-RG--FDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh-cc--CCCceeeeeccccccchhhhcC
Confidence 99999999999999999865544333444456776 8999999999965555 43 79999999998754 443332
Q ss_pred --cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 261 --TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 261 --~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
...+-+.++|||+.+++++|.....+...+.+.+||..+...+.++.-....|..+.|+|.-+.|++|+.||++++|=
T Consensus 406 L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 406 LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 335578899999999999999887778888999999999999999888888999999999999999999999998863
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.1e-34 Score=220.99 Aligned_cols=265 Identities=18% Similarity=0.311 Sum_probs=225.6
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee--------ecCCCcEEEEEeecCCCCEEEEeeCCCcEEE
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL--------EGHDKRVATASWNHWNGHILTSGSQDKSIIN 156 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 156 (364)
+...-+.|..|||||++|++|+.||.|.+||..+|+..+.+ --+..+|.|++|+. +..++++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEE
Confidence 55677899999999999999999999999999998765543 34778999999999 9999999999999999
Q ss_pred EEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 157 HDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
|.++++.++.+.-.+|...|+|+.|+.|+..+++++.|.++++.-+.. +++++.+++|.+.|+...|.++|..++.+
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS---GK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS---GKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc---chhHHHhcCccccccceEEcCCCCeEEEe
Confidence 999999986665569999999999999999999999999999998665 46699999999999999999999766654
Q ss_pred ecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeeccc---c
Q 040533 237 GGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH---Q 309 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~ 309 (364)
. .||+|++|+..+.+++.+++.. .+|.++..-|.+. .++++. ..++++|.++. |+.++.+.. .
T Consensus 367 S---sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN------rsntv~imn~q-GQvVrsfsSGkRE 436 (508)
T KOG0275|consen 367 S---SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN------RSNTVYIMNMQ-GQVVRSFSSGKRE 436 (508)
T ss_pred c---CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc------CCCeEEEEecc-ceEEeeeccCCcc
Confidence 4 6999999999999999888653 4688887777654 344443 37889998874 566666643 2
Q ss_pred ccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 310 TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 310 ~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.+...+.+.+|.|.++++.++|+.++.|.+.+++...++..|...|.+++-+|-
T Consensus 437 gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH 490 (508)
T KOG0275|consen 437 GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH 490 (508)
T ss_pred CCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcc
Confidence 345667789999999999999999999999999999999999888888888774
No 72
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-32 Score=234.27 Aligned_cols=303 Identities=16% Similarity=0.259 Sum_probs=253.3
Q ss_pred eeecccCCCc----cEEEEEeCCeEEEEECCC-Cce------eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEe
Q 040533 47 YSNMMDWGRN----NILAIALGLELYLWKQEN-GEV------QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWD 115 (364)
Q Consensus 47 ~~~~~~~~~~----~~~~~~~~~~i~iw~~~~-~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 115 (364)
-+..++|-|. +.+..-.++.+..|.++. +.. ....++.+|...|.++++|.+...+++|+ .+.++||+
T Consensus 322 kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn 400 (888)
T KOG0306|consen 322 KIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWN 400 (888)
T ss_pred heeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEE
Confidence 3566666552 234445678888887765 211 22356679999999999999888777775 67899999
Q ss_pred cCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCC
Q 040533 116 AETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDN 195 (364)
Q Consensus 116 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 195 (364)
..+.++++++... .+.+..|-| .++++++|...|.+.+||+.+.. +.....+|.+.|.+++.+||++.+++|+.|.
T Consensus 401 ~~t~kciRTi~~~--y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~-l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk 476 (888)
T KOG0306|consen 401 RDTLKCIRTITCG--YILASKFVP-GDRYIVLGTKNGELQVFDLASAS-LVETIRAHDGAIWSISLSPDNKGFVTGSADK 476 (888)
T ss_pred ccCcceeEEeccc--cEEEEEecC-CCceEEEeccCCceEEEEeehhh-hhhhhhccccceeeeeecCCCCceEEecCCc
Confidence 9999999999853 889999999 99999999999999999998776 4777789999999999999999999999999
Q ss_pred eEEEEeCCCCCC--C--cceEEe-----cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCe
Q 040533 196 LVHVWDHSKMSS--S--KCLHRF-----RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQI 265 (364)
Q Consensus 196 ~i~iwd~~~~~~--~--~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v 265 (364)
+|++||+.-... + +.+..+ -.-...|.|++++|+++++.+ +- .|.++++|-+.+-+..-++.+ .-||
T Consensus 477 tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV-sL--LdnTVkVyflDtlKFflsLYGHkLPV 553 (888)
T KOG0306|consen 477 TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV-SL--LDNTVKVYFLDTLKFFLSLYGHKLPV 553 (888)
T ss_pred EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE-Ee--ccCeEEEEEecceeeeeeecccccce
Confidence 999999753211 1 111111 123567999999999965555 33 799999999999887776654 4799
Q ss_pred EEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCC
Q 040533 266 CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 345 (364)
.++.++|+++.+++|+. |.+|++|-++-|.+-+.+-+|...|.++.|-|+...+.++|.|+.|+-||-...+.+
T Consensus 554 ~smDIS~DSklivTgSA------DKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~i 627 (888)
T KOG0306|consen 554 LSMDISPDSKLIVTGSA------DKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEI 627 (888)
T ss_pred eEEeccCCcCeEEeccC------CCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhh
Confidence 99999999999999865 999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccCCceeeeeeccC
Q 040533 346 GDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 346 ~~~~~~~~~v~~~~~sp~ 363 (364)
+.+.+|...|++++.+|.
T Consensus 628 q~L~~H~~ev~cLav~~~ 645 (888)
T KOG0306|consen 628 QKLDGHHSEVWCLAVSPN 645 (888)
T ss_pred eeeccchheeeeeEEcCC
Confidence 999999999999999985
No 73
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-32 Score=211.29 Aligned_cols=266 Identities=18% Similarity=0.290 Sum_probs=221.2
Q ss_pred EEEEEeCCeEEEEECCC----------CceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 58 ILAIALGLELYLWKQEN----------GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~----------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
+++++....|.-+++.- ..+.+++.+..|.++|++++. ++.++|+|+.|-+|+|||+.+...+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 67777777777776542 223456778899999999998 589999999999999999999999999999
Q ss_pred CCCcEEEEEeecCCCC--EEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 128 HDKRVATASWNHWNGH--ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
|.+.|+++.|.+ .-. .|++|+.||.|.+|+...- .....+++|.+.|+.++.+|.+++.++.+.|+.++.||+-.+
T Consensus 82 HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 82 HAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred cccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 999999999987 443 8999999999999998765 458889999999999999999999999999999999998876
Q ss_pred CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCc
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSS 285 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 285 (364)
.... +..+. ..-..+.|+|.|.++++.+ ...|-+|.+.+......+..+..+.++.|...+.+ ++|
T Consensus 160 r~a~-v~~L~---~~at~v~w~~~Gd~F~v~~----~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L-~vG----- 225 (362)
T KOG0294|consen 160 RVAF-VLNLK---NKATLVSWSPQGDHFVVSG----RNKIDIYQLDNASVFREIENPKRILCATFLDGSEL-LVG----- 225 (362)
T ss_pred ccce-eeccC---CcceeeEEcCCCCEEEEEe----ccEEEEEecccHhHhhhhhccccceeeeecCCceE-EEe-----
Confidence 5422 22332 2234499999998777764 46799999999888877777777888888765554 444
Q ss_pred cCCCCeEEEeeCCCCceeeeccccccceeEEee--cCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 286 SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQ--SPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 286 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
++++.|.+||..+..+...+.+|...|.++.+ .|++.+|+++|.||.|+|||++..
T Consensus 226 -~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 226 -GDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred -cCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 34899999999999999999999999999984 567889999999999999999876
No 74
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-31 Score=204.58 Aligned_cols=278 Identities=18% Similarity=0.249 Sum_probs=226.6
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec--CCcEEEEecCCccee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM--ASKLQLWDAETSKLI 122 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~ 122 (364)
.+++++|++++ +++.+.|..+++||..+++..+... .++-.+..++|......++.++. |.+|+..++.+.+.+
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~--skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee--cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 37889998864 5666778899999999998766655 45566888888877777777765 889999999999999
Q ss_pred eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 123 RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
+.+.+|...|..++.+| -++.+++++.|++|++||++..++. ..+.... -...+|.|+|-++|++.....|++||+
T Consensus 94 RYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cq-g~l~~~~--~pi~AfDp~GLifA~~~~~~~IkLyD~ 169 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQ-GLLNLSG--RPIAAFDPEGLIFALANGSELIKLYDL 169 (311)
T ss_pred EEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCc-eEEecCC--CcceeECCCCcEEEEecCCCeEEEEEe
Confidence 99999999999999999 7799999999999999999977653 3332222 235789999999999988889999999
Q ss_pred CCCCCCcceEEec---ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCC----eEEEEEcCCcc
Q 040533 203 SKMSSSKCLHRFR---DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ----ICGLEWNRHHK 275 (364)
Q Consensus 203 ~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~----v~~~~~~~~~~ 275 (364)
|....+ +..++. +.....+.+.|+|+|+.++++. ..+.+++.|.-+|....++..... -...+|+|+++
T Consensus 170 Rs~dkg-PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 170 RSFDKG-PFTTFSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred cccCCC-CceeEccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence 976442 333333 3356789999999999999875 589999999999998888865422 25789999999
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeeeccc-cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH-QTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
++++|.. ||.|.+|+++++..+..+++ +.+++.++.|+|.-.++++++ ..+.+|-....
T Consensus 246 Fvl~gs~------dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~ 305 (311)
T KOG1446|consen 246 FVLSGSD------DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDED 305 (311)
T ss_pred EEEEecC------CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecccc
Confidence 9999854 99999999999999999998 688999999999877777665 57888866543
No 75
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1e-33 Score=226.24 Aligned_cols=273 Identities=19% Similarity=0.280 Sum_probs=231.2
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+..+.|-++ .+.+++.|..|++|+...++......+.+..+.|+++.|.+++..+++++.|+.+++|++.+.+...++
T Consensus 178 v~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL 257 (459)
T KOG0288|consen 178 VHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL 257 (459)
T ss_pred cceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh
Confidence 566666654 578899999999999988886666677788899999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.+|.+.|+++.|.. ....+++|+.|.+|+.||+....+....+. ...+..+..+ ...+++|..|++|++||.+..
T Consensus 258 sGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~ 332 (459)
T KOG0288|consen 258 SGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSA 332 (459)
T ss_pred cccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccc--cccccceEec--ceeeeecccccceEEEeccCC
Confidence 99999999999987 555699999999999999987665433332 3445666665 457899999999999998875
Q ss_pred CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-----CCCeEEEEEcCCccceeee
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-----KAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~ 280 (364)
.. ......+ +.|+++..++++..++.++ .|.++.+.|+++.+....+.. ....+.+.|||++.|+++|
T Consensus 333 ~~---~~sv~~g-g~vtSl~ls~~g~~lLsss---RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG 405 (459)
T KOG0288|consen 333 DK---TRSVPLG-GRVTSLDLSMDGLELLSSS---RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG 405 (459)
T ss_pred ce---eeEeecC-cceeeEeeccCCeEEeeec---CCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeec
Confidence 43 5555544 5899999999998888774 799999999999988877753 3568999999999999999
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeecccccc--ceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTS--RILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
+. ||.|+||++.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 406 S~------dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 406 SA------DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cC------CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 65 99999999999999988876554 499999999999999999999999993
No 76
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=212.30 Aligned_cols=282 Identities=17% Similarity=0.315 Sum_probs=228.6
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCC------------C----ceeeeeeecCCCCCceEEEEcCCCCEEEEEecC
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQEN------------G----EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA 108 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~------------~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 108 (364)
.+.+-+|++++ +.+++.|-.|+|+|.+. + ....+.++..|.++|+++.|+|....|++|+.|
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence 36778889876 34466789999999861 1 112345677899999999999999999999999
Q ss_pred CcEEEEecCCcceeeeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee--eecccCcEEEEEEcCC
Q 040533 109 SKLQLWDAETSKLIRNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR--INAHTAEVCGLKWSNE 184 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~v~~~~~~~~ 184 (364)
++|++||+......+-++ ....+|.++.|+| .|++|+.|....++++||+++.++.+.. -..|.+.|+++.+++.
T Consensus 194 ~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t 272 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSST 272 (430)
T ss_pred CeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCC
Confidence 999999987543322221 2457899999999 9999999999999999999988865443 3468899999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEecc-c-ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD-H-RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK 262 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 262 (364)
+++.++++.||.|++|| +-..+++.++.. | ...|.+..|..+++++|.+| .|..+++|.+.+++++..+.+.
T Consensus 273 ~~lYvTaSkDG~IklwD---GVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG---~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 273 GSLYVTASKDGAIKLWD---GVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG---KDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred ccEEEEeccCCcEEeec---cccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC---CcceeeeeeecCCceEEEEecC
Confidence 99999999999999999 555566766642 4 35799999999998877776 7999999999999999988654
Q ss_pred C------CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-ccccceeEEeecCCCCEEEEEeCCCcEE
Q 040533 263 A------QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-HQTSRILELSQSPDGLTVVSAAADETLR 335 (364)
Q Consensus 263 ~------~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~ 335 (364)
+ .-+...|+....+++.-. ...+.+.-||.++...+..+. +|.+.+..+.-||.+.-+++|+.|-.++
T Consensus 347 g~tgrq~~rtqAvFNhtEdyVl~pD-----Eas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raR 421 (430)
T KOG0640|consen 347 GTTGRQKHRTQAVFNHTEDYVLFPD-----EASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRAR 421 (430)
T ss_pred CcccchhhhhhhhhcCccceEEccc-----cccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceee
Confidence 2 134566777777777653 236789999999987776654 7999999999999999999999999999
Q ss_pred EEEee
Q 040533 336 FWEAF 340 (364)
Q Consensus 336 vw~~~ 340 (364)
+|--+
T Consensus 422 FWyrr 426 (430)
T KOG0640|consen 422 FWYRR 426 (430)
T ss_pred eeeec
Confidence 99643
No 77
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=6e-31 Score=231.25 Aligned_cols=250 Identities=16% Similarity=0.227 Sum_probs=189.5
Q ss_pred EecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc-------eeeeeecccCcEE
Q 040533 105 GYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN-------VTSRINAHTAEVC 177 (364)
Q Consensus 105 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-------~~~~~~~~~~~v~ 177 (364)
|+.++.|++|+......+..+.+|...|.+++|+|.++++|++|+.||+|++||+.++.. ....+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 556788999998877788889999999999999995589999999999999999976431 2345678999999
Q ss_pred EEEEcCCCCE-EEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE
Q 040533 178 GLKWSNEGNL-LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI 256 (364)
Q Consensus 178 ~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 256 (364)
+++|+|++.. |++++.|+.|++||+++... +..+. +...|.+++|+|+|. ++++++ .|+.|++||+++++.+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~---~~~i~-~~~~V~SlswspdG~-lLat~s--~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKR---AFQIN-MPKKLSSLKWNIKGN-LLSGTC--VGKHMHIIDPRKQEIA 202 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcE---EEEEe-cCCcEEEEEECCCCC-EEEEEe--cCCEEEEEECCCCcEE
Confidence 9999998865 57899999999999987542 44443 567899999999995 556654 7999999999999998
Q ss_pred EEEecCC-Ce-----EEEEEcCCccceeeeccCCccCCCCeEEEeeCCC-Cceeeecc--ccccceeEEeecCCCCEEEE
Q 040533 257 HSVDTKA-QI-----CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH-MTKWGELQ--HQTSRILELSQSPDGLTVVS 327 (364)
Q Consensus 257 ~~~~~~~-~v-----~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~--~~~~~i~~i~~~~~~~~l~~ 327 (364)
..+..+. .+ ....|++++.+++++..- ...++.|+|||++. .+++..+. .+.+.+......++|.++++
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d--~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFS--KNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcC--CCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE
Confidence 8886553 22 223456888888876420 01125899999985 55555443 23333333444556889999
Q ss_pred EeCCCcEEEEEeeCCCCCccee--ccCCceeeeeeccCC
Q 040533 328 AAADETLRFWEAFGPSGSGDFV--SHLDGLLSLKVSPIR 364 (364)
Q Consensus 328 ~~~dg~i~vw~~~~~~~~~~~~--~~~~~v~~~~~sp~~ 364 (364)
|+.|+.|++|++..+. +..+. .+..++.+++|.|.|
T Consensus 281 GkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 281 GKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 9999999999997653 22222 357789999999986
No 78
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=6.3e-32 Score=240.26 Aligned_cols=270 Identities=20% Similarity=0.344 Sum_probs=226.8
Q ss_pred CCCCCceEEEEcCCCCEEEEEe--cCCcEEEEecCC------------cceeeeeecCCCcEEEEEeecCCCCEEEEeeC
Q 040533 85 GEDDFPTSISWSQDAKTLAVGY--MASKLQLWDAET------------SKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 150 (364)
.+...|.++..+|||..+|+|+ .||.++||+.+. .+.+.++..|.+.|+|+.|+| ++.+||+|+.
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSD 89 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYLASGSD 89 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeEeeccC
Confidence 3456789999999999999999 899999998742 234556778999999999999 9999999999
Q ss_pred CCcEEEEEccc------Cc-----------ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEE
Q 040533 151 DKSIINHDVRV------SN-----------NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR 213 (364)
Q Consensus 151 dg~i~~~d~~~------~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 213 (364)
|+.|.+|.... .. .....+.+|...|..++|+|++.+|++++.|++|.+|+.++. +.+..
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF---~~~~v 166 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF---ELLKV 166 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc---eeeee
Confidence 99999999872 00 245677899999999999999999999999999999997775 55889
Q ss_pred ecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-------CCeEEEEEcCCccceeeeccCCcc
Q 040533 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-------AQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 214 ~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
+.+|.+.|..+.|+|-|+ ++++-+ .|++|++|++.+....+.+..+ .....+.|||||.+|++...+.
T Consensus 167 l~~H~s~VKGvs~DP~Gk-y~ASqs--dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n-- 241 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDPIGK-YFASQS--DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN-- 241 (942)
T ss_pred eecccccccceEECCccC-eeeeec--CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc--
Confidence 999999999999999995 455544 7999999998887676666432 3478999999999999987654
Q ss_pred CCCCeEEEeeCCCCceeeeccccccceeEEeecCC-----CC------------EEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 287 GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPD-----GL------------TVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 287 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-----~~------------~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
+...++.|.+..+.+.-..+-+|.+++.++.|+|. .+ .+|+|+.|++|.||.....+++....
T Consensus 242 ~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~ 321 (942)
T KOG0973|consen 242 GGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH 321 (942)
T ss_pred CCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh
Confidence 55678999999999988899999999999999981 11 57899999999999997777765543
Q ss_pred -ccCCceeeeeeccC
Q 040533 350 -SHLDGLLSLKVSPI 363 (364)
Q Consensus 350 -~~~~~v~~~~~sp~ 363 (364)
-....|.+++|||.
T Consensus 322 ~lf~~SI~DmsWspd 336 (942)
T KOG0973|consen 322 NLFNKSIVDMSWSPD 336 (942)
T ss_pred hhhcCceeeeeEcCC
Confidence 34678999999985
No 79
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=3.5e-33 Score=223.16 Aligned_cols=266 Identities=18% Similarity=0.294 Sum_probs=227.2
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc--eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
+.+..|.+.+..+.|-++...|++|+.|..|++|+....+ .+.++.+..++|+.+.|.+ ++..+++++.|+.+++|+
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeee
Confidence 3455889999999999998999999999999999987665 6777888889999999999 899999999999999999
Q ss_pred cccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec
Q 040533 159 VRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
+...+ ...++.+|.+.|+++.|......+++|+.|.+|++||+.+... ..++. ..+.+..|..++ ..+++|.
T Consensus 248 vd~~r-~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C---~kt~l-~~S~cnDI~~~~---~~~~SgH 319 (459)
T KOG0288|consen 248 VDSLR-LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC---SKTVL-PGSQCNDIVCSI---SDVISGH 319 (459)
T ss_pred ccchh-hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe---ecccc-ccccccceEecc---eeeeecc
Confidence 98766 4778899999999999988777799999999999999877433 33332 234456666553 5677765
Q ss_pred CCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc----cccee
Q 040533 239 GTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ----TSRIL 314 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~i~ 314 (364)
.|++|++||.++..+...++.++.|+++..++++..+++... |..+.+.|+++.+....+... ....+
T Consensus 320 --~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssR------Ddtl~viDlRt~eI~~~~sA~g~k~asDwt 391 (459)
T KOG0288|consen 320 --FDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSR------DDTLKVIDLRTKEIRQTFSAEGFKCASDWT 391 (459)
T ss_pred --cccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecC------CCceeeeecccccEEEEeeccccccccccc
Confidence 899999999999999999999999999999999999998754 999999999998887776532 23478
Q ss_pred EEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCC--ceeeeeeccC
Q 040533 315 ELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLD--GLLSLKVSPI 363 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~--~v~~~~~sp~ 363 (364)
.+.|||++.|+++||.||.|+||++.+++....+..... .|++++|+|.
T Consensus 392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS 442 (459)
T ss_pred eeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence 999999999999999999999999999999888875544 4999999985
No 80
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-30 Score=196.87 Aligned_cols=270 Identities=19% Similarity=0.280 Sum_probs=224.2
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
+.+.+|+.+++.+.++.+|.+|.+++.|.++.||-..+|+.+.++.+|.+.|+|++.+. +.+.+++|+.|.++++||++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcC
Confidence 34569999999999999999999999999999999889999999999999999999988 89999999999999999999
Q ss_pred cCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-----CCeEEEEeCCCCC----CCcceEEecccccceeEEEEccCCC
Q 040533 161 VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-----DNLVHVWDHSKMS----SSKCLHRFRDHRAAVKALAWCPYQF 231 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~ 231 (364)
++++ +..+ ....+|..+.|+++|++++...+ .+.|.++|++... ...+...+..+.+.++.+-|.|-++
T Consensus 83 tGk~-la~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 83 TGKQ-LATW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CCcE-EEEe-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 9986 3333 35678999999999998887754 3679999998543 4456777778889999999999996
Q ss_pred cEEEeecCCCCCeEEEEECCCCeEEEEE--ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 232 NVLASGGGTQDGCIKIWNVQKGTCIHSV--DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
.+++ |. .||.|.+||+++++..... .+...|+.++++++..++++++. |.+-++||..+.+.++++..
T Consensus 161 ~ii~-Gh--e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~------Dttakl~D~~tl~v~Kty~t- 230 (327)
T KOG0643|consen 161 TIIA-GH--EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK------DTTAKLVDVRTLEVLKTYTT- 230 (327)
T ss_pred EEEE-ec--CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc------CccceeeeccceeeEEEeee-
Confidence 5555 44 8999999999998655433 34578999999999999998854 99999999999999998864
Q ss_pred ccceeEEeecCCCCEEEEEeCCCc--------------EEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 310 TSRILELSQSPDGLTVVSAAADET--------------LRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 310 ~~~i~~i~~~~~~~~l~~~~~dg~--------------i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
..+|++.+++|....++.|+.... -++|++--.+.+..+++|-++|++|+|+|.
T Consensus 231 e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd 298 (327)
T KOG0643|consen 231 ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD 298 (327)
T ss_pred cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence 568999999998777777654322 233333333446677899999999999995
No 81
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.6e-30 Score=196.17 Aligned_cols=267 Identities=15% Similarity=0.313 Sum_probs=227.2
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCcceeee
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
+.+++|+.+ .+..++.|+.+.+|+++..+........+|.+.|-.++|+| ..+.+++++.|.+|++||+..+++...
T Consensus 23 v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~ 102 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTAR 102 (313)
T ss_pred ceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEE
Confidence 778889875 47788899999999999887766677779999999999998 457899999999999999999999998
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+....+.+ .+.|+| ++++++.++.|..|...|.++.+. .. -......++.++|+.++.+++....-|.|.|.....
T Consensus 103 i~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~-~~-~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps 178 (313)
T KOG1407|consen 103 IETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKI-VN-EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS 178 (313)
T ss_pred eeccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccce-ee-hhcccceeeeeeecCCCCEEEEecCCceEEEEeccc
Confidence 88655554 578999 999999999999999999987663 22 224456688899998787777777779999998664
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccC
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
.+++..+++|+....|+.|+|+|+ .+++|+ .|..+.+||+..--+++.+. ..-+|..+.|+.+|++|+++
T Consensus 179 ---Lkpv~si~AH~snCicI~f~p~Gr-yfA~Gs--ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa--- 249 (313)
T KOG1407|consen 179 ---LKPVQSIKAHPSNCICIEFDPDGR-YFATGS--ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA--- 249 (313)
T ss_pred ---cccccccccCCcceEEEEECCCCc-eEeecc--ccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc---
Confidence 466999999999999999999995 566655 89999999999988888875 45789999999999999988
Q ss_pred CccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 331 (364)
++|..|-|-++++|..+.+++ +.++...++|+|...+||-+..|
T Consensus 250 ---SEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 250 ---SEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ---CccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 559999999999999999986 67888999999999999887655
No 82
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=4.9e-32 Score=209.35 Aligned_cols=273 Identities=18% Similarity=0.305 Sum_probs=222.9
Q ss_pred eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc------------------ceeeeeecCCCcEEEEEeecCC
Q 040533 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS------------------KLIRNLEGHDKRVATASWNHWN 141 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~ 141 (364)
...+..|+.++.+.+|+|||.++|+|+.|..|+|.|++.. -.++++..|..+|+++.|+| .
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-r 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-R 183 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-h
Confidence 3445689999999999999999999999999999998621 24567778999999999999 9
Q ss_pred CCEEEEeeCCCcEEEEEcccCcceeee--eecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc
Q 040533 142 GHILTSGSQDKSIINHDVRVSNNVTSR--INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA 219 (364)
Q Consensus 142 ~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 219 (364)
..+|++|+.|++|+++|+..... .+. ......+|.+++|+|.|.+|+.|.....+++||+++.+.......-..|.+
T Consensus 184 e~ILiS~srD~tvKlFDfsK~sa-KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSA-KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred hheEEeccCCCeEEEEecccHHH-HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 99999999999999999874431 111 113456899999999999999999999999999887543222223346889
Q ss_pred ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe---cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 220 AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD---TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 220 ~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
.|+++.+++.+ .+.++++ .||.|++||--+++++.++. .+..|++..|..+++++++. +.|..+++|.
T Consensus 263 ai~~V~Ys~t~-~lYvTaS--kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS------G~DS~vkLWE 333 (430)
T KOG0640|consen 263 AITQVRYSSTG-SLYVTAS--KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS------GKDSTVKLWE 333 (430)
T ss_pred ceeEEEecCCc-cEEEEec--cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec------CCcceeeeee
Confidence 99999999998 6888876 99999999999999998885 24679999999999999987 4599999999
Q ss_pred CCCCceeeeccccc-----cceeEEeecCCCCEEEEEeC-CCcEEEEEeeCCCCCccee-ccCCceeeeeeccC
Q 040533 297 YPHMTKWGELQHQT-----SRILELSQSPDGLTVVSAAA-DETLRFWEAFGPSGSGDFV-SHLDGLLSLKVSPI 363 (364)
Q Consensus 297 ~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~sp~ 363 (364)
+.+++++.++.+-. .--+...|+....|++.-.+ .+.+.-||.++...+..+. +|.+.+..+.-||.
T Consensus 334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~ 407 (430)
T KOG0640|consen 334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPV 407 (430)
T ss_pred ecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCC
Confidence 99999999886531 12345567777777776543 4679999999988877665 89999999998885
No 83
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-30 Score=225.10 Aligned_cols=296 Identities=23% Similarity=0.308 Sum_probs=240.7
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEE
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATA 135 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 135 (364)
+.++.++.+|.+.+|++.+++.. .+++++...|+++.=+|--+.+|.|..+|+|.|++++.++.+.+++...++|+++
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v--~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vtsl 250 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVV--YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSL 250 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEE--EEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEE
Confidence 45888899999999999999874 5555888999999999999999999999999999999999999999556999999
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----------
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK----------- 204 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~----------- 204 (364)
+|.-+...++++|+..|.+.+||++..+........|.+.|....|.|....+++++.|..+++|=.++
T Consensus 251 SFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R 330 (910)
T KOG1539|consen 251 SFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSR 330 (910)
T ss_pred EeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeec
Confidence 998844457778888899999999876654445556777777777777777777777777666553321
Q ss_pred --------------------------------------------------------------------------------
Q 040533 205 -------------------------------------------------------------------------------- 204 (364)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (364)
T Consensus 331 ~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~ 410 (910)
T KOG1539|consen 331 GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE 410 (910)
T ss_pred cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence
Q ss_pred ------------------------------------------------------------------CCCCcceEEe---c
Q 040533 205 ------------------------------------------------------------------MSSSKCLHRF---R 215 (364)
Q Consensus 205 ------------------------------------------------------------------~~~~~~~~~~---~ 215 (364)
.+.+.....+ .
T Consensus 411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ 490 (910)
T KOG1539|consen 411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP 490 (910)
T ss_pred hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence 0000001111 2
Q ss_pred ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEe
Q 040533 216 DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLW 295 (364)
Q Consensus 216 ~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~ 295 (364)
.|.++|+.++...-+ .++++++ .+|.+.+||..+...+..+.....+..+..+.....++.+. +|-.|.++
T Consensus 491 ah~~~V~gla~D~~n-~~~vsa~--~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~------ddf~I~vv 561 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTN-RLLVSAG--ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL------DDFSIRVV 561 (910)
T ss_pred cccCceeEEEecCCC-ceEEEcc--CcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc------CceeEEEE
Confidence 356677777776655 4555554 79999999999999999999999999999999888887774 49999999
Q ss_pred eCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 296 KYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 296 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|..+.+.++++.+|.+.|++++|||||++|++++.|++|++||+.++..+-.+. -..+.+++.|||.
T Consensus 562 D~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPn 628 (910)
T KOG1539|consen 562 DVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPN 628 (910)
T ss_pred EchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCC
Confidence 999999999999999999999999999999999999999999999998877664 4778999999995
No 84
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.5e-31 Score=236.45 Aligned_cols=291 Identities=19% Similarity=0.295 Sum_probs=228.5
Q ss_pred cceeecccCCCcc--EEEEE--eCCeEEEEECCCC----------ceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCc
Q 040533 45 DYYSNMMDWGRNN--ILAIA--LGLELYLWKQENG----------EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASK 110 (364)
Q Consensus 45 ~~~~~~~~~~~~~--~~~~~--~~~~i~iw~~~~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 110 (364)
+..+.+++-+|+. +.+++ .|+.+.||+.+.- -...+.+...|.+.|+|+.|+|||++||+|++|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 3346677778875 55556 5788889986521 12345666789999999999999999999999999
Q ss_pred EEEEecCC------------------cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc
Q 040533 111 LQLWDAET------------------SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH 172 (364)
Q Consensus 111 i~iw~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 172 (364)
|.||.... .+....+.+|...|..++|+| ++.+|++++.|++|.+||..+. .....+.+|
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H 170 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGH 170 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccc-eeeeeeecc
Confidence 99999762 135667889999999999999 9999999999999999999988 568899999
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc------ccceeEEEEccCCCcEEEeec-CCCCCeE
Q 040533 173 TAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH------RAAVKALAWCPYQFNVLASGG-GTQDGCI 245 (364)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~-g~~d~~i 245 (364)
.+.|..+.|.|-|++||+-+.|++|++|++.+... .+.+.++ ...+..+.|+|||.++.+..+ ...-.++
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i---~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI---EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEccccee---eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 99999999999999999999999999999765333 3333322 335788999999976655432 0023468
Q ss_pred EEEECCCCeEEEEE-ecCCCeEEEEEcCC------c---------cceeeeccCCccCCCCeEEEeeCCCCceeeeccc-
Q 040533 246 KIWNVQKGTCIHSV-DTKAQICGLEWNRH------H---------KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH- 308 (364)
Q Consensus 246 ~i~d~~~~~~~~~~-~~~~~v~~~~~~~~------~---------~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~- 308 (364)
.|.+-.+.+.-..+ .|..++.++.|+|. . .|.+++ .++.|++|.||.....+++.....
T Consensus 248 ~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A----vgSqDrSlSVW~T~~~RPl~vi~~l 323 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA----VGSQDRSLSVWNTALPRPLFVIHNL 323 (942)
T ss_pred EEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE----EecCCccEEEEecCCCCchhhhhhh
Confidence 88888777765555 45688999999972 1 111111 336799999999988888776543
Q ss_pred cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 309 QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
....|.+++|+|||..|+++|.||+|.+..++..+.
T Consensus 324 f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 324 FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 456899999999999999999999999999887543
No 85
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=3.5e-31 Score=214.38 Aligned_cols=250 Identities=23% Similarity=0.434 Sum_probs=208.4
Q ss_pred cCCCCCceEEEEcCCC-CEEEEEecCCcEEEEecCCcc----------eeeeeecCCCcEEEEEeecCCCCEEEEeeCCC
Q 040533 84 TGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDAETSK----------LIRNLEGHDKRVATASWNHWNGHILTSGSQDK 152 (364)
Q Consensus 84 ~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 152 (364)
..|.+.|+.+..-|+. ..+|+++..+.|.|||..+.. .-..+.+|...-..++|++...-.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 3789999999999955 567778889999999986431 11267789887888999998888999999999
Q ss_pred cEEEEEcccCcc------eeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEE
Q 040533 153 SIINHDVRVSNN------VTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALA 225 (364)
Q Consensus 153 ~i~~~d~~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 225 (364)
.|++||+..... ....+.+|...|..++|++ +..+|++++.|+.+.|||+|.. ..++.....+|.+.|.|++
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEE
Confidence 999999976543 3557889999999999999 5678999999999999999974 5566778889999999999
Q ss_pred EccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC---
Q 040533 226 WCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM--- 300 (364)
Q Consensus 226 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~--- 300 (364)
|+|.+.++||+|+ .|++|++||+|+- +++.++.. ...|..+.|+|....+++.+ +.|+.+.+||+..-
T Consensus 280 fnp~~~~ilAT~S--~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS-----g~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 280 FNPFNEFILATGS--ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS-----GTDRRLNVWDLSRIGEE 352 (422)
T ss_pred eCCCCCceEEecc--CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEec-----ccCCcEEEEeccccccc
Confidence 9999999999987 9999999999984 45566654 47799999999988877654 46999999998642
Q ss_pred -----------ceeeeccccccceeEEeecCCCC-EEEEEeCCCcEEEEEeeC
Q 040533 301 -----------TKWGELQHQTSRILELSQSPDGL-TVVSAAADETLRFWEAFG 341 (364)
Q Consensus 301 -----------~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~~~ 341 (364)
+++..-.+|...|..+.|+|+.. .|++.+.|+.+.||++..
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 23345568999999999999887 467889999999999863
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.2e-31 Score=202.03 Aligned_cols=260 Identities=17% Similarity=0.255 Sum_probs=207.3
Q ss_pred CCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCC-ccee-eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc
Q 040533 85 GEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAET-SKLI-RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV 161 (364)
Q Consensus 85 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 161 (364)
..++.|.+++||| ...++++|+.||+|++|+++. |... +....|.++|.+++|+. ++..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccC
Confidence 4578899999999 556777999999999999986 3332 34456999999999999 999999999999999999998
Q ss_pred CcceeeeeecccCcEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 162 SNNVTSRINAHTAEVCGLKWSNEGN--LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
++ ...+..|.++|..+.|-+... .|++|+.|.+|+.||.|.. .++.++. -++.++++..-. -+++.+.
T Consensus 104 ~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~---~pv~t~~-LPeRvYa~Dv~~---pm~vVat- 173 (347)
T KOG0647|consen 104 GQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS---NPVATLQ-LPERVYAADVLY---PMAVVAT- 173 (347)
T ss_pred CC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC---Ceeeeee-ccceeeehhccC---ceeEEEe-
Confidence 86 566778999999999988555 8999999999999998864 3455554 356677665533 2444443
Q ss_pred CCCCeEEEEECCCCeEEEE-Ee--cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC--ceeeeccccc----
Q 040533 240 TQDGCIKIWNVQKGTCIHS-VD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM--TKWGELQHQT---- 310 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~-~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~--~~~~~~~~~~---- 310 (364)
.++.|.+|+++++..... ++ ..-++.+++..++....+.|.. +|.+.|..+..+ +.-..++.|.
T Consensus 174 -a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi------EGrv~iq~id~~~~~~nFtFkCHR~~~~ 246 (347)
T KOG0647|consen 174 -AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI------EGRVAIQYIDDPNPKDNFTFKCHRSTNS 246 (347)
T ss_pred -cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee------cceEEEEecCCCCccCceeEEEeccCCC
Confidence 689999999987644322 22 2356889998888887777754 999999998876 3334455554
Q ss_pred -----cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 311 -----SRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 311 -----~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
..|.+|+|+|.-..|+|++.||++.+||-.....++....|..+|++.+|+-
T Consensus 247 ~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~ 303 (347)
T KOG0647|consen 247 VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNR 303 (347)
T ss_pred CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecC
Confidence 2578899999999999999999999999999999998889999999999874
No 87
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-30 Score=199.73 Aligned_cols=265 Identities=16% Similarity=0.229 Sum_probs=206.9
Q ss_pred eeecccCCC--ccEE-EEEeCCeEEEEECCCC-ceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee
Q 040533 47 YSNMMDWGR--NNIL-AIALGLELYLWKQENG-EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 47 ~~~~~~~~~--~~~~-~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
.+.+++||| ++++ |++.|++|++|+++.. .... .....|.++|.+++|+.||..+++|+.|+.+++||+.+++ +
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~ 106 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-V 106 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-e
Confidence 488899999 3455 7789999999999874 4433 3445889999999999999999999999999999999994 5
Q ss_pred eeeecCCCcEEEEEeecCCCC--EEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 123 RNLEGHDKRVATASWNHWNGH--ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
..+..|..+|.++.|-+ ... .|++|+.|.+|+.||.+...+ +..+ .....+.++..- ..+++++..++.|.+|
T Consensus 107 ~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~p-v~t~-~LPeRvYa~Dv~--~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 107 SQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNP-VATL-QLPERVYAADVL--YPMAVVATAERHIAVY 181 (347)
T ss_pred eeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCe-eeee-eccceeeehhcc--CceeEEEecCCcEEEE
Confidence 66777999999999987 554 899999999999999997665 3333 234556666543 4588889999999999
Q ss_pred eCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC--eEEEEEecCC----------CeEEE
Q 040533 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG--TCIHSVDTKA----------QICGL 268 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~----------~v~~~ 268 (364)
+++++....... ...-.-.++|++..++.... +.|+ -+|.+.+..+..+ +.-.+++.+. .|.++
T Consensus 182 nL~n~~te~k~~-~SpLk~Q~R~va~f~d~~~~-alGs--iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 182 NLENPPTEFKRI-ESPLKWQTRCVACFQDKDGF-ALGS--IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred EcCCCcchhhhh-cCcccceeeEEEEEecCCce-Eeee--ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 997653311111 11123457899988887655 4444 8999999999876 3233333321 37789
Q ss_pred EEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEE
Q 040533 269 EWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA 328 (364)
Q Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 328 (364)
+|+|....|++.++ ||...+||-.....+.+.+.|..+|++..|+.+|.++|-+
T Consensus 258 ~FhP~hgtlvTaGs------DGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 258 AFHPVHGTLVTAGS------DGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EeecccceEEEecC------CceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 99999888887754 9999999999999999999999999999999999988665
No 88
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-30 Score=211.50 Aligned_cols=286 Identities=18% Similarity=0.274 Sum_probs=231.4
Q ss_pred CeEEEEECCCCceeeeeeecCC-CCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCC
Q 040533 65 LELYLWKQENGEVQKLLKVTGE-DDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG 142 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (364)
..+.+||+.+|.... ++++. ...-.++..- .+.+++++. ....|.+|.+..........--.++|.+++-+| .|
T Consensus 18 ~~~~~~dl~TGt~~~--~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n-~G 93 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLL--QYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSN-LG 93 (476)
T ss_pred cceeEEecCCCceeE--EecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCC-Cc
Confidence 469999999997533 33232 1111112111 235677665 345799999876655554444678899999999 99
Q ss_pred CEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------CCCcceEEecc
Q 040533 143 HILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM------SSSKCLHRFRD 216 (364)
Q Consensus 143 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~ 216 (364)
.+|+.|+..|.+++|.+.++.. +..+.+|-..|+++.|+.||.+|++|+.||.|.+|++... ...++++.+..
T Consensus 94 ~~l~ag~i~g~lYlWelssG~L-L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSGIL-LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred eEEEeecccCcEEEEEeccccH-HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 9999999999999999998874 6667899999999999999999999999999999986431 24567889999
Q ss_pred cccceeEEEEccCC-CcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEe
Q 040533 217 HRAAVKALAWCPYQ-FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLW 295 (364)
Q Consensus 217 ~~~~v~~~~~~~~~-~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~ 295 (364)
|.-+|+++...+.+ ...+++++ .|.++++||+..+..+.++..+..+.+++.+|.+..+++|.. +|.|.+.
T Consensus 173 HtlsITDl~ig~Gg~~~rl~TaS--~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~------~G~I~~~ 244 (476)
T KOG0646|consen 173 HTLSITDLQIGSGGTNARLYTAS--EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTE------EGKIFQN 244 (476)
T ss_pred CcceeEEEEecCCCccceEEEec--CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCC------cceEEee
Confidence 99999999987753 34566655 899999999999999999999999999999999999999965 9999988
Q ss_pred eCCC----------------Cceeeecccccc--ceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceee
Q 040533 296 KYPH----------------MTKWGELQHQTS--RILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLS 357 (364)
Q Consensus 296 d~~~----------------~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~ 357 (364)
++.. +..+..+.+|.+ .|+|++++-||..|++|+.||.|+|||+.+.+.++++....++|+-
T Consensus 245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtn 324 (476)
T KOG0646|consen 245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTN 324 (476)
T ss_pred ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccce
Confidence 8743 234455678887 9999999999999999999999999999999999988877899999
Q ss_pred eeeccC
Q 040533 358 LKVSPI 363 (364)
Q Consensus 358 ~~~sp~ 363 (364)
+.+.|.
T Consensus 325 L~i~~~ 330 (476)
T KOG0646|consen 325 LQINPL 330 (476)
T ss_pred eEeecc
Confidence 998653
No 89
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=100.00 E-value=6e-29 Score=209.91 Aligned_cols=285 Identities=14% Similarity=0.178 Sum_probs=214.3
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEE-EEEecCCcEEEEecCCcceeeeeecCCCcEEEEE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTL-AVGYMASKLQLWDAETSKLIRNLEGHDKRVATAS 136 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 136 (364)
+++.+.|+.|++||..+++....+. .+ ..+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~--~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFP--VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEE--CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 4566779999999999888655443 33 346789999999876 5667789999999999888777765443 56789
Q ss_pred eecCCCCEEEE-eeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCCCCcceEEe
Q 040533 137 WNHWNGHILTS-GSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDN-LVHVWDHSKMSSSKCLHRF 214 (364)
Q Consensus 137 ~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~ 214 (364)
|+| +++.+++ ++.++.+++||+++.+. +..+. +...+.+++|+|++++++++..++ .+..||.++.. .....
T Consensus 80 ~~~-~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~---~~~~~ 153 (300)
T TIGR03866 80 LHP-NGKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE---IVDNV 153 (300)
T ss_pred ECC-CCCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe---EEEEE
Confidence 999 7776654 55689999999987553 33333 234468899999999999988765 46778976532 23222
Q ss_pred cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--------CCeEEEEEcCCccceeeeccCCcc
Q 040533 215 RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--------AQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 215 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
. .......++|+|++..+++++. .++.|++||+++++.+..+... .....++|+|++++++++.
T Consensus 154 ~-~~~~~~~~~~s~dg~~l~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~----- 225 (300)
T TIGR03866 154 L-VDQRPRFAEFTADGKELWVSSE--IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL----- 225 (300)
T ss_pred E-cCCCccEEEECCCCCEEEEEcC--CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc-----
Confidence 2 2334578999999977766654 6899999999999887766422 1235688999999866543
Q ss_pred CCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEE-eCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 287 GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA-AADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 287 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
..++.+.+||..+++.+..+. +...+.+++|+|+|++|+++ +.+|.|++||+.+++.+..+... ...++++|+|
T Consensus 226 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 226 GPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 226789999999888776553 34578999999999999886 46899999999999988888754 5669999987
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.8e-30 Score=200.45 Aligned_cols=287 Identities=15% Similarity=0.259 Sum_probs=235.8
Q ss_pred CCCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec----
Q 040533 41 NLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA---- 116 (364)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~---- 116 (364)
++.+.++-.+.+-...-+-+++.|.+..||.++++.+. .++.+|.+.|++++|++.+.++++++.|++.+||..
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL--~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL--ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccce--eeecccccceeeEEeccccceEEEccCCcchHHHHHhhcC
Confidence 34444443333322222445667899999999999974 455699999999999999999999999999999962
Q ss_pred --CC------------------------------c----ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 117 --ET------------------------------S----KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 117 --~~------------------------------~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
.. + .++..+.+|...|.+..|.. .++.+++++.|.+..+||++
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVE 302 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVE 302 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccceeeeec
Confidence 10 0 12345778999999999998 99999999999999999999
Q ss_pred cCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 161 VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
++.. +..+.+|....+.++-+|..+++++.+.|.+.++||++. ....+..|++|...|+++.|..+. -+++|+
T Consensus 303 tge~-v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd--~vVSgS-- 375 (481)
T KOG0300|consen 303 TGEV-VNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDD--RVVSGS-- 375 (481)
T ss_pred cCce-eccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEEecCC--ceeecC--
Confidence 8874 788999999999999999999999999999999999984 346688899999999999999875 455654
Q ss_pred CCCeEEEEECCCC-eEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee----eccccccceeE
Q 040533 241 QDGCIKIWNVQKG-TCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG----ELQHQTSRILE 315 (364)
Q Consensus 241 ~d~~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~----~~~~~~~~i~~ 315 (364)
.|.+|++||+++. .++.++...++++.++.+..++.++.-.. +..|++||+...+... .-++|...|+|
T Consensus 376 DDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhD------NRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c 449 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHD------NRQVRLFDLNGNRLARLPRTSRQGHRRMVTC 449 (481)
T ss_pred CCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccC------CceEEEEecCCCccccCCcccccccceeeee
Confidence 9999999999985 56788999999999999999999988754 8899999997544322 34589999999
Q ss_pred EeecCCCC--EEEEEeCCCcEEEEEeeCCC
Q 040533 316 LSQSPDGL--TVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 316 i~~~~~~~--~l~~~~~dg~i~vw~~~~~~ 343 (364)
++|..+-. -|++++-|..+.=|++..+.
T Consensus 450 ~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 450 CAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eeccccCcccccccccccceeeeeEecccC
Confidence 99986543 48899999999999988654
No 91
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=2.2e-29 Score=221.44 Aligned_cols=245 Identities=17% Similarity=0.240 Sum_probs=184.0
Q ss_pred eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecCCcc--------eeeeeecCCCcEE
Q 040533 63 LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAETSK--------LIRNLEGHDKRVA 133 (364)
Q Consensus 63 ~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~v~ 133 (364)
..+.|.+|+..... .+..+.+|.+.|.+++|+|+ +++||+|+.||.|+|||+.++. .+..+.+|...|.
T Consensus 52 ~~gvI~L~~~~r~~--~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 52 LIGAIRLENQMRKP--PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred ceeEEEeeecCCCc--eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 45688899876543 45566799999999999996 7899999999999999997642 2346788999999
Q ss_pred EEEeecCCCC-EEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceE
Q 040533 134 TASWNHWNGH-ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 134 ~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 212 (364)
+++|+| ++. +|++++.|++|++||++++.. ...+. |...|.+++|+|+|.+|++++.|+.|++||+++. ..+.
T Consensus 130 sVaf~P-~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg---~~i~ 203 (568)
T PTZ00420 130 IIDWNP-MNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ---EIAS 203 (568)
T ss_pred EEEECC-CCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC---cEEE
Confidence 999999 555 567999999999999997764 33343 5678999999999999999999999999998875 3467
Q ss_pred EecccccceeEE-----EEccCCCcEEEeecC-CCCCeEEEEECCC-CeEEEEEecCCCe---EEEEEcCCccceeeecc
Q 040533 213 RFRDHRAAVKAL-----AWCPYQFNVLASGGG-TQDGCIKIWNVQK-GTCIHSVDTKAQI---CGLEWNRHHKEILSGHG 282 (364)
Q Consensus 213 ~~~~~~~~v~~~-----~~~~~~~~~~~~~~g-~~d~~i~i~d~~~-~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~~ 282 (364)
.+.+|.+.+... .|++++..++++|.. ..+++|++||+++ ++++..+..+... ......++|.++++|.+
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 788887765432 345777666666530 0125899999995 5666665544332 23333445777777755
Q ss_pred CCccCCCCeEEEeeCCCCceeeecc--ccccceeEEeecCCC
Q 040533 283 FSSSGDGQKLCLWKYPHMTKWGELQ--HQTSRILELSQSPDG 322 (364)
Q Consensus 283 ~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~ 322 (364)
|+.|++|++..+. +..+. .+..++.+++|.|..
T Consensus 284 ------D~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 284 ------DGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred ------CCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 9999999997764 22222 255678899999964
No 92
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1e-28 Score=183.05 Aligned_cols=264 Identities=18% Similarity=0.341 Sum_probs=213.4
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC------cc---------eeeeeecCCCcEEEEEeecCCCCEEEEee
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET------SK---------LIRNLEGHDKRVATASWNHWNGHILTSGS 149 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~------~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 149 (364)
.....|.+++|+|.|.+.|+|+...+.+|..... +. ..+.-+.|.+.|.|.+|+| .++++++|+
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~geliatgs 108 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGELIATGS 108 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccCeEEecC
Confidence 4567899999999999999999999988875421 10 1122345889999999999 999999999
Q ss_pred CCCcEEEEEcccCcc----eeeeeecccCcEEEEEEcCC----CCEEEEEe-CCCeEEEEeCCCCCCCcceEEecccccc
Q 040533 150 QDKSIINHDVRVSNN----VTSRINAHTAEVCGLKWSNE----GNLLASGG-DDNLVHVWDHSKMSSSKCLHRFRDHRAA 220 (364)
Q Consensus 150 ~dg~i~~~d~~~~~~----~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 220 (364)
.|.+|++.-++.... .-..+..|.+.|..++|-.+ +.+|++++ .|..|++-|...+ +..+.+.+|.+-
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g---~~~~a~sghtgh 185 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG---QGFHALSGHTGH 185 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC---CcceeecCCccc
Confidence 999999976654321 12356679999999999653 45777765 4667787786554 558888999998
Q ss_pred eeEEE-EccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--------CCeEEEEEcCCccceeeeccCCccCCCCe
Q 040533 221 VKALA-WCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--------AQICGLEWNRHHKEILSGHGFSSSGDGQK 291 (364)
Q Consensus 221 v~~~~-~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 291 (364)
|.++- |+ + .++++|+ .|.+|++||++-..++.++... +.|.+++..|.|++|++|.. |..
T Consensus 186 ilalyswn--~-~m~~sgs--qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~------dss 254 (350)
T KOG0641|consen 186 ILALYSWN--G-AMFASGS--QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA------DSS 254 (350)
T ss_pred EEEEEEec--C-cEEEccC--CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC------CCc
Confidence 87763 43 2 7888876 9999999999999888887531 56899999999999999976 999
Q ss_pred EEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC----CcceeccCCceeeeeeccC
Q 040533 292 LCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG----SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 292 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~v~~~~~sp~ 363 (364)
..+||++.++.++.+..|...|.++.|+|...|+++++.|..|++-|+...-. .-....|.+.+..+.|+|.
T Consensus 255 c~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 255 CMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred eEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCc
Confidence 99999999999999999999999999999999999999999999999875321 2234478999999999984
No 93
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.1e-31 Score=209.73 Aligned_cols=263 Identities=14% Similarity=0.296 Sum_probs=221.1
Q ss_pred eeecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 81 LKVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
..+.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+.+..+..++.+|.+.|..+++. ...+++++.|.+|+.|.+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~---~~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVT---QTSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEec---ccceEEecCCcceeeeec
Confidence 3456999999999999976 789999999999999999999999999999999999994 477889999999999998
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
+.. +...+.+ ...+..+.-+..+..+++++++ |.|||.+.. .++..+.-....|.++.|+|-...+|++++
T Consensus 137 ~~~--p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~---~Pv~smswG~Dti~svkfNpvETsILas~~- 207 (433)
T KOG0268|consen 137 DGP--PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRD---NPVSSMSWGADSISSVKFNPVETSILASCA- 207 (433)
T ss_pred cCC--cceeeec-cccccccccccccccccccCce--eeecccccC---CccceeecCCCceeEEecCCCcchheeeec-
Confidence 753 3444433 4556777777777889999865 999997653 457777767788999999999999999987
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC-ceeeeccccccceeEEee
Q 040533 240 TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM-TKWGELQHQTSRILELSQ 318 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~ 318 (364)
.|+.|.+||++.+.+++.+.....-+.++|+|.+-.+.++ ++|..++.||++.. .++....+|.+.|.+++|
T Consensus 208 -sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a------~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdf 280 (433)
T KOG0268|consen 208 -SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAA------NEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDF 280 (433)
T ss_pred -cCCceEEEecccCCccceeeeeccccceecCccccceeec------cccccceehhhhhhcccchhhcccceeEEEecc
Confidence 8999999999999999999888889999999966555555 56999999999864 566778899999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEeeCCCCCcceec-cCCceeeeeecc
Q 040533 319 SPDGLTVVSAAADETLRFWEAFGPSGSGDFVS-HLDGLLSLKVSP 362 (364)
Q Consensus 319 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~v~~~~~sp 362 (364)
||.|+-+++||.|.+|+||.+..+.....+.. --..|.+|.||-
T Consensus 281 sptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~ 325 (433)
T KOG0268|consen 281 SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM 325 (433)
T ss_pred CCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec
Confidence 99999999999999999999988766544432 234588888874
No 94
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=5.7e-30 Score=224.37 Aligned_cols=253 Identities=28% Similarity=0.436 Sum_probs=222.6
Q ss_pred CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee-eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc
Q 040533 86 EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN-LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN 164 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 164 (364)
+...+.+..|. ..++++++.+++|++||..++..+.. +.+|.+.|.++++.. .+++|++|+.|.++++||..++.+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcE
Confidence 56678888887 56899999999999999999998888 999999999999976 799999999999999999888875
Q ss_pred eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 165 VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
...+.+|...+.++...+ ..+++|+.|.+|++|++.++ ..+..+.+|.++|.++..+ + .++++|+ .|++
T Consensus 284 -~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~---~~l~l~~~h~~~V~~v~~~--~-~~lvsgs--~d~~ 352 (537)
T KOG0274|consen 284 -THSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG---ACLNLLRGHTGPVNCVQLD--E-PLLVSGS--YDGT 352 (537)
T ss_pred -EEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCc---ceEEEeccccccEEEEEec--C-CEEEEEe--cCce
Confidence 778889999999987654 47888999999999998864 5588888899999999998 3 5677765 8999
Q ss_pred EEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC-ceeeeccccccceeEEeecCCC
Q 040533 245 IKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM-TKWGELQHQTSRILELSQSPDG 322 (364)
Q Consensus 245 i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~ 322 (364)
|++||..+++++.++..+ ..|.++.+.+. ..++.|.. |+.|++||+.+. +++..+.+|.+-+..+.+ .+
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~------D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~ 423 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL------DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RD 423 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee------ccceEeecCCchhhhhhhhcCCccccccccc--cc
Confidence 999999999999999765 77999988776 77777744 999999999999 999999999998877766 67
Q ss_pred CEEEEEeCCCcEEEEEeeCCCCCcceec-cCCceeeeeec
Q 040533 323 LTVVSAAADETLRFWEAFGPSGSGDFVS-HLDGLLSLKVS 361 (364)
Q Consensus 323 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~v~~~~~s 361 (364)
++|++++.||+|++||..+++.+.++.+ |...|..+++.
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG 463 (537)
T ss_pred ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC
Confidence 7999999999999999999999999988 67889888874
No 95
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.5e-29 Score=195.35 Aligned_cols=257 Identities=15% Similarity=0.221 Sum_probs=208.1
Q ss_pred CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 86 EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
.++.|.++.|+|.++.|++++.||.+++||+........+. |..++.+++|. +...+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~-- 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFA--DESTIVTGGLDGQVRRYDLNTGN-- 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeecc--CCceEEEeccCceEEEEEecCCc--
Confidence 36789999999999999999999999999999887776766 89999999998 57789999999999999999877
Q ss_pred eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeE
Q 040533 166 TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 245 (364)
...+..|..+|.|+.+++....+++|+.|++|++||.+... ....+. ....|.++....+ .|++ |+ .|..+
T Consensus 87 ~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~---~~~~~d-~~kkVy~~~v~g~--~LvV-g~--~~r~v 157 (323)
T KOG1036|consen 87 EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV---VVGTFD-QGKKVYCMDVSGN--RLVV-GT--SDRKV 157 (323)
T ss_pred ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc---cccccc-cCceEEEEeccCC--EEEE-ee--cCceE
Confidence 45577899999999999988899999999999999988522 233322 3447888877642 4444 33 79999
Q ss_pred EEEECCCCeEEEEE---ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC----ceeeeccccc--------
Q 040533 246 KIWNVQKGTCIHSV---DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM----TKWGELQHQT-------- 310 (364)
Q Consensus 246 ~i~d~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~----~~~~~~~~~~-------- 310 (364)
.+||+++.....+. ...-++.+++.-|++.-.++++. +|.|.+=.++.. +.-..++.|.
T Consensus 158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi------eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~ 231 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI------EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEI 231 (323)
T ss_pred EEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee------cceEEEEccCCchHHhhhceeEEeeecccCCceE
Confidence 99999987654432 23456899999997776666644 999988777655 3334455553
Q ss_pred -cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 311 -SRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 311 -~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
-+|.+|+|+|--..||||+.||.|.+||+.+.+.+..+......|.+++|+-
T Consensus 232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~ 284 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM 284 (323)
T ss_pred EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc
Confidence 3799999999999999999999999999999999999988778899998874
No 96
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=7.9e-29 Score=191.43 Aligned_cols=264 Identities=16% Similarity=0.208 Sum_probs=209.2
Q ss_pred eeecccCCC--ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGR--NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~--~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+..+.|+| +.++++++||.+++||....+....+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++....
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~---~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~- 89 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF---KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ- 89 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe---ecCCceeeeeccC-CceEEEeccCceEEEEEecCCccee-
Confidence 366777776 46999999999999999988654443 6789999999996 4578899999999999999887654
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+..|..+|.|+.+++ ....+++|+.|++|++||.+.... ...+ .....|.++..+ ++.|++|+.+..+.+||+++
T Consensus 90 igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~-~~~~-d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVV-VGTF-DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eccCCCceEEEEeec-cCCeEEEcccCccEEEEecccccc-cccc-ccCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 455999999999999 888999999999999999986432 2223 233478887765 66899999999999999998
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC----eEEEEEecC----------CCeEEEEE
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG----TCIHSVDTK----------AQICGLEW 270 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~~~----------~~v~~~~~ 270 (364)
...... ..-..-.-.++++++.|++..++++. -||.|.+=.+... +....++.| -+|++++|
T Consensus 165 ~~~~~q-~reS~lkyqtR~v~~~pn~eGy~~sS---ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 165 LDEPFQ-RRESSLKYQTRCVALVPNGEGYVVSS---IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred ccchhh-hccccceeEEEEEEEecCCCceEEEe---ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 765331 12223456789999999776666643 7999988766654 222333332 36899999
Q ss_pred cCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeC
Q 040533 271 NRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA 330 (364)
Q Consensus 271 ~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 330 (364)
+|-...+++|.. ||.|.+||+.+.+.+.++......|.+++|+.+|..||+++.
T Consensus 241 hp~~~tfaTgGs------DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 241 HPIHGTFATGGS------DGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccccceEEecCC------CceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999998855 999999999999999999888788999999999999999864
No 97
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-29 Score=212.09 Aligned_cols=256 Identities=23% Similarity=0.413 Sum_probs=215.7
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec
Q 040533 92 SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA 171 (364)
Q Consensus 92 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 171 (364)
-+.|+ ..+.||+|. ...|++|+..+++.......+...|+++.|++ +|.+|++|..+|.|.|||....+. ...+..
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~-~~~~~~ 257 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKK-TRTLRG 257 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccc-cccccC
Confidence 35666 455788775 55899999999987766666689999999999 999999999999999999987765 455556
Q ss_pred -ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEEC
Q 040533 172 -HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 172 -~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 250 (364)
|...|-+++|+ +..+.+|+.|+.|..+|++..+.. ...+.+|...|..++|++++ ..+++|+ .|+.+.|||.
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~--~~~~~~H~qeVCgLkws~d~-~~lASGg--nDN~~~Iwd~ 330 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV--VSTLQGHRQEVCGLKWSPDG-NQLASGG--NDNVVFIWDG 330 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh--hhhhhcccceeeeeEECCCC-CeeccCC--CccceEeccC
Confidence 99999999998 568999999999999999976542 22478899999999999999 6788877 9999999999
Q ss_pred CCCeEEEEE-ecCCCeEEEEEcCCc-cceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEE
Q 040533 251 QKGTCIHSV-DTKAQICGLEWNRHH-KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA 328 (364)
Q Consensus 251 ~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 328 (364)
....+...+ ++...|.+++|+|-. ..||+|.+ ..|+.|++||..++..+..+.. .+.|.+|.|++..+-|+++
T Consensus 331 ~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG----s~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~st 405 (484)
T KOG0305|consen 331 LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG----SADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLST 405 (484)
T ss_pred CCccccEEEeccceeeeEeeeCCCccCceEEcCC----CcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEe
Confidence 777766666 456889999999964 55666655 5599999999999999988864 4679999999998766664
Q ss_pred --eCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 329 --AADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 329 --~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
..++.|.||++.+.+.+..+.+|...|..+++||.
T Consensus 406 hG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 406 HGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPD 442 (484)
T ss_pred cCCCCCcEEEEeccccceeeeecCCcceeEEEEECCC
Confidence 45778999999999999999999999999999995
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.9e-29 Score=202.22 Aligned_cols=276 Identities=20% Similarity=0.306 Sum_probs=225.7
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCcee-ee-------------eee--cCCCCCceEEEEcCCCCEEEEEecCC
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQ-KL-------------LKV--TGEDDFPTSISWSQDAKTLAVGYMAS 109 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~-~~-------------~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg 109 (364)
+.+++.+++ ..+.++.+++|.-|+..+++.. .+ ... .+|...+.+++.|+||++||+|+.|.
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~ 224 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR 224 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence 677777776 6888999999999999887632 11 111 27888999999999999999999999
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEE
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLA 189 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (364)
.|.||+.++.+.++.+.+|.+.|.+++|-. ..+.|++++.|+.|++|+++... .+.++.+|.+.|.++.-..-++.+-
T Consensus 225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s-~vetlyGHqd~v~~IdaL~reR~vt 302 (479)
T KOG0299|consen 225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLS-YVETLYGHQDGVLGIDALSRERCVT 302 (479)
T ss_pred eEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhH-HHHHHhCCccceeeechhcccceEE
Confidence 999999999999999999999999999988 78889999999999999998665 4778889999999999888888888
Q ss_pred EEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec--------
Q 040533 190 SGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-------- 261 (364)
Q Consensus 190 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-------- 261 (364)
+|+.|+++++|++... ....+.++.+.+.|++|-.+. -+++|+ .+|.|.+|++.+.+++.+...
T Consensus 303 VGgrDrT~rlwKi~ee----sqlifrg~~~sidcv~~In~~--HfvsGS--dnG~IaLWs~~KKkplf~~~~AHgv~~~~ 374 (479)
T KOG0299|consen 303 VGGRDRTVRLWKIPEE----SQLIFRGGEGSIDCVAFINDE--HFVSGS--DNGSIALWSLLKKKPLFTSRLAHGVIPEL 374 (479)
T ss_pred eccccceeEEEecccc----ceeeeeCCCCCeeeEEEeccc--ceeecc--CCceEEEeeecccCceeEeeccccccCCc
Confidence 8889999999998432 244566788899999998764 455654 999999999999988877632
Q ss_pred -----CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC----ceeeeccccccceeEEeecCCCCEEEEE-eCC
Q 040533 262 -----KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM----TKWGELQHQTSRILELSQSPDGLTVVSA-AAD 331 (364)
Q Consensus 262 -----~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d 331 (364)
+..|++++..|...++++|.. +|.|++|.+..+ +++..+. -.+.|++++|+++|+.|++| +..
T Consensus 375 ~~~~~~~Witsla~i~~sdL~asGS~------~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 375 DPVNGNFWITSLAVIPGSDLLASGSW------SGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred cccccccceeeeEecccCceEEecCC------CCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccc
Confidence 126899999999999998855 999999998776 3444444 45789999999999966555 555
Q ss_pred CcEEEEEee
Q 040533 332 ETLRFWEAF 340 (364)
Q Consensus 332 g~i~vw~~~ 340 (364)
..+--|-..
T Consensus 448 hRlGRW~~~ 456 (479)
T KOG0299|consen 448 HRLGRWWCL 456 (479)
T ss_pred cccceeeEe
Confidence 556555443
No 99
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=9.8e-30 Score=206.05 Aligned_cols=242 Identities=23% Similarity=0.455 Sum_probs=196.8
Q ss_pred eecccCCCc--cEEEE-EeCCeEEEEECCCC--------ceeeeeeecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEe
Q 040533 48 SNMMDWGRN--NILAI-ALGLELYLWKQENG--------EVQKLLKVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWD 115 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~-~~~~~i~iw~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~ 115 (364)
++.+..-|+ .++|. +..+.|+|||..+. +..+...+.+|...=++++|++.. -.|++|+.|+.|++||
T Consensus 127 VnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwd 206 (422)
T KOG0264|consen 127 VNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWD 206 (422)
T ss_pred chhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEe
Confidence 444444443 35554 45689999997643 333445777999988999999854 4788999999999999
Q ss_pred cCCcc-------eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc-CcceeeeeecccCcEEEEEEcC-CCC
Q 040533 116 AETSK-------LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV-SNNVTSRINAHTAEVCGLKWSN-EGN 186 (364)
Q Consensus 116 ~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~ 186 (364)
+.... ....+.+|...|..++|+|.+.++|++++.|+.+.|||+++ ..+......+|.++|+|++|+| ++.
T Consensus 207 i~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ 286 (422)
T KOG0264|consen 207 INAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEF 286 (422)
T ss_pred ccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCc
Confidence 97542 34567889999999999999999999999999999999996 3344667789999999999999 677
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE-----------
Q 040533 187 LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC----------- 255 (364)
Q Consensus 187 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~----------- 255 (364)
.||+|+.|++|.+||+|+.. +++..+.+|...|..+.|+|....++++++ .|+.+.+||+..-..
T Consensus 287 ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~etvLASSg--~D~rl~vWDls~ig~eq~~eda~dgp 362 (422)
T KOG0264|consen 287 ILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNETVLASSG--TDRRLNVWDLSRIGEEQSPEDAEDGP 362 (422)
T ss_pred eEEeccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCceeEecc--cCCcEEEEeccccccccChhhhccCC
Confidence 99999999999999999875 478999999999999999999999999987 999999999965211
Q ss_pred ---EEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 256 ---IHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 256 ---~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
+.... +...|..+.|+|....+++.. ++|+.+.||.+.
T Consensus 363 pEllF~HgGH~~kV~DfsWnp~ePW~I~Sv-----aeDN~LqIW~~s 404 (422)
T KOG0264|consen 363 PELLFIHGGHTAKVSDFSWNPNEPWTIASV-----AEDNILQIWQMA 404 (422)
T ss_pred cceeEEecCcccccccccCCCCCCeEEEEe-----cCCceEEEeecc
Confidence 12222 235699999999999988754 679999999976
No 100
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.4e-30 Score=202.40 Aligned_cols=277 Identities=12% Similarity=0.219 Sum_probs=216.4
Q ss_pred eecccCCCcc---EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 48 SNMMDWGRNN---ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 48 ~~~~~~~~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
+.+++-+|+. +++++.||.|++||+...++.. .+..|.+.|..+++.. ..+++++.|.+|+.|.++. ..+.+
T Consensus 69 V~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~--~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~t 143 (433)
T KOG0268|consen 69 VSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR--TFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHT 143 (433)
T ss_pred cchhhcCcchhhhhhccccCceEEEEehhhhhhhh--eeecccCceeeEEecc--cceEEecCCcceeeeeccC-Cccee
Confidence 6677777754 6788899999999999887644 4559999999999986 5677888899999999865 46666
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE-GNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~ 203 (364)
+. ....+..+.-+. .++.+++++++ |.|||.+-.. ++..+.--...|.++.|+|. ...|++++.|+.|.+||++
T Consensus 144 il-g~s~~~gIdh~~-~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R 218 (433)
T KOG0268|consen 144 IL-GKSVYLGIDHHR-KNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLR 218 (433)
T ss_pred ee-cccccccccccc-ccccccccCce--eeecccccCC-ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecc
Confidence 65 345677777766 77889988874 8999987555 46667667788999999994 4688888899999999998
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-EEEEEe-cCCCeEEEEEcCCccceeeec
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT-CIHSVD-TKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 281 (364)
.... ++... ....-+.|+|+|.. +.++++. +|..++.||++.-+ ++.... +.+.|.++.|||.|+.+++|+
T Consensus 219 ~~~P---l~KVi-~~mRTN~IswnPea-fnF~~a~--ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 219 QASP---LKKVI-LTMRTNTICWNPEA-FNFVAAN--EDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred cCCc---cceee-eeccccceecCccc-cceeecc--ccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 7644 33332 23455789999955 6666655 99999999998743 444443 447899999999999999885
Q ss_pred cCCccCCCCeEEEeeCCCCceeeecc-ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcc
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQ-HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGD 347 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 347 (364)
- |.+|+||..+.+.....+. .-.+.|.++.||.|.+|+++||.|+.|++|.....+.+..
T Consensus 292 y------DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 292 Y------DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGV 352 (433)
T ss_pred c------cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCC
Confidence 4 9999999998765544332 1236799999999999999999999999999877665543
No 101
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.7e-30 Score=220.45 Aligned_cols=288 Identities=20% Similarity=0.362 Sum_probs=227.6
Q ss_pred eecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeec--C---CCCCceEEEEcC-CCCEEEEEecCCcEEEEecCC--
Q 040533 48 SNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVT--G---EDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAET-- 118 (364)
Q Consensus 48 ~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~--~---~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~-- 118 (364)
.++++-.++ .-++++....+.+|.+............ . -...+..+.|+. +.++||+++.+|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~ 121 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI 121 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence 344555554 3455556677888877654332222111 1 122455778875 568999999999999999987
Q ss_pred -cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCe
Q 040533 119 -SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNL 196 (364)
Q Consensus 119 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 196 (364)
.+.+..+..|...++++.|++...++|++|+.||.|++||++.... ...+.+....|..+.|+| .+..++++.+.|.
T Consensus 122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~ 200 (839)
T KOG0269|consen 122 RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-KSTFRSNSESIRDVKFSPGYGNKFASIHDSGY 200 (839)
T ss_pred cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-cccccccchhhhceeeccCCCceEEEecCCce
Confidence 5677788999999999999998899999999999999999998775 556667888999999999 6789999999999
Q ss_pred EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC--eEEEEEecCCCeEEEEEcCCc
Q 040533 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG--TCIHSVDTKAQICGLEWNRHH 274 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~~v~~~~~~~~~ 274 (364)
+.+||+|... ++...+.+|.++|.++.|+|++ .++|+|| .|+.|+|||+.+. +...++....++..+.|-|..
T Consensus 201 lqlWDlRqp~--r~~~k~~AH~GpV~c~nwhPnr-~~lATGG--RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~ 275 (839)
T KOG0269|consen 201 LQLWDLRQPD--RCEKKLTAHNGPVLCLNWHPNR-EWLATGG--RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPAR 275 (839)
T ss_pred EEEeeccCch--hHHHHhhcccCceEEEeecCCC-ceeeecC--CCccEEEEeccCCCccceeEEeecceeeeeeeccCc
Confidence 9999999764 5677888999999999999955 7899987 9999999999865 445667778999999999998
Q ss_pred cceeeeccCCccCCCCeEEEeeCCCC-ceeeeccccccceeEEeecC-CCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 275 KEILSGHGFSSSGDGQKLCLWKYPHM-TKWGELQHQTSRILELSQSP-DGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 275 ~~l~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
++.++... ...|-.|+|||++.. -+...+..|...++.++|.. |-..|.+++.||+|..-.+++...
T Consensus 276 ~~hLAtcs---mv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 276 SYHLATCS---MVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred cchhhhhh---ccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 87665432 234889999999754 45667888999999999966 445789999999987766665543
No 102
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=208.27 Aligned_cols=272 Identities=15% Similarity=0.234 Sum_probs=208.0
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc----eeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEE
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK----LIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
..+++|...|.++++.|.|-.|++|+.|-.|++||+.... ..+.+. .....|.+++|++ +++.|++.+.....+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSAQAK 239 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCccee
Confidence 4566889999999999999999999999999999997542 222222 2345799999999 888888888888999
Q ss_pred EEEcccCccee------------eeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEecc---ccc
Q 040533 156 NHDVRVSNNVT------------SRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRD---HRA 219 (364)
Q Consensus 156 ~~d~~~~~~~~------------~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~ 219 (364)
++|-.... .. ...++|...++|.+|+|.. ..+++++.||++++||+.+......+...+. ..-
T Consensus 240 l~DRdG~~-~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 240 LLDRDGFE-IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred EEccCCce-eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 99865322 22 2345799999999999954 5899999999999999987654333333222 234
Q ss_pred ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE--EEE-e-c--CCCeEEEEEcCCccceeeeccCCccCCCCeEE
Q 040533 220 AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI--HSV-D-T--KAQICGLEWNRHHKEILSGHGFSSSGDGQKLC 293 (364)
Q Consensus 220 ~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~-~-~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 293 (364)
+++.++|+|+++. +++|. .||.|.+|+..+.... ..+ + | +..|+++.||++|++|++-+ .|+.++
T Consensus 319 ~~tsC~~nrdg~~-iAagc--~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg------~D~tLK 389 (641)
T KOG0772|consen 319 PVTSCAWNRDGKL-IAAGC--LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG------FDDTLK 389 (641)
T ss_pred CceeeecCCCcch-hhhcc--cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc------CCCcee
Confidence 6889999999965 66655 8999999998654322 112 1 2 24799999999999999874 499999
Q ss_pred EeeCCCCc-eeeecccc--ccceeEEeecCCCCEEEEEe------CCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 294 LWKYPHMT-KWGELQHQ--TSRILELSQSPDGLTVVSAA------ADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 294 i~d~~~~~-~~~~~~~~--~~~i~~i~~~~~~~~l~~~~------~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+||++..+ ++....+- ..+-+.++|||+.++|++|+ ..|++.+||..+...+..+.-....|..+.|+|.
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK 468 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecch
Confidence 99998754 44443332 23457899999999999985 3578999999998888887777888999999985
No 103
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.8e-29 Score=215.31 Aligned_cols=277 Identities=15% Similarity=0.227 Sum_probs=226.5
Q ss_pred cEEEEEeCCeEEEEECCCCceeee-----------------------------------eeecCCCCCceEEEEcCCCCE
Q 040533 57 NILAIALGLELYLWKQENGEVQKL-----------------------------------LKVTGEDDFPTSISWSQDAKT 101 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~~~~~~~-----------------------------------~~~~~~~~~v~~~~~s~~~~~ 101 (364)
-+++++.|++|++|++..+....+ ...-+....+.+++.||+|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 378889999999999876221110 001123456899999999999
Q ss_pred EEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecC--CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEE
Q 040533 102 LAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW--NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGL 179 (364)
Q Consensus 102 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~ 179 (364)
||+|..-|+++||++.+-+....+..|...|.|+.|+.. ..++|++++.|..|.+||+...-.+...+.+|...|+++
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv 553 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV 553 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence 999999999999999999999999999999999999742 347899999999999999987777788899999999999
Q ss_pred EEcCCC--CEEEEEeCCCeEEEEeCCCCCCCcceE--EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 180 KWSNEG--NLLASGGDDNLVHVWDHSKMSSSKCLH--RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 180 ~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
.|-.+| ..+++++.|..|.+--.++...+.... +-......++.++..|..+ ++++++ .|..|+|||+.+++.
T Consensus 554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~c--QDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVC--QDRNIRIFDIESGKQ 630 (1080)
T ss_pred EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEe--cccceEEEeccccce
Confidence 998877 688999999877654333222211110 0011234688999999885 455554 899999999999999
Q ss_pred EEEEec----CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC
Q 040533 256 IHSVDT----KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 256 ~~~~~~----~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 331 (364)
.+.++. .+....+...|.|.|+++... |.++.++|..+++++.++.+|...|+.+.|.+|.+.|++.+.|
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScs------dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD 704 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCS------DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD 704 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEEeec------CCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC
Confidence 999964 366888999999999999865 9999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeeCC
Q 040533 332 ETLRFWEAFGP 342 (364)
Q Consensus 332 g~i~vw~~~~~ 342 (364)
|.|.||.+...
T Consensus 705 gCIFvW~lp~~ 715 (1080)
T KOG1408|consen 705 GCIFVWKLPLT 715 (1080)
T ss_pred ceEEEEECchh
Confidence 99999998653
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3e-27 Score=175.23 Aligned_cols=284 Identities=17% Similarity=0.250 Sum_probs=217.4
Q ss_pred CCcceeecccCCCc-cEEEEEeC-CeEEEEECCC------C----c---eeeeeeecCCCCCceEEEEcCCCCEEEEEec
Q 040533 43 RNDYYSNMMDWGRN-NILAIALG-LELYLWKQEN------G----E---VQKLLKVTGEDDFPTSISWSQDAKTLAVGYM 107 (364)
Q Consensus 43 ~~~~~~~~~~~~~~-~~~~~~~~-~~i~iw~~~~------~----~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 107 (364)
.+...+.+++|+|. ++.+++++ .+++|..... + + ......-+.|.+.|+|.+|+|+|+++|+|+.
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 34445889999996 57777654 5666654321 1 1 1122233478999999999999999999999
Q ss_pred CCcEEEEecCCcce-----eeeeecCCCcEEEEEeec--C-CCCEEEEee-CCCcEEEEEcccCcceeeeeecccCcEEE
Q 040533 108 ASKLQLWDAETSKL-----IRNLEGHDKRVATASWNH--W-NGHILTSGS-QDKSIINHDVRVSNNVTSRINAHTAEVCG 178 (364)
Q Consensus 108 dg~i~iw~~~~~~~-----~~~~~~~~~~v~~~~~~~--~-~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~v~~ 178 (364)
|.+|++.-++.... -..+..|.+.|..++|.. . .+.+|++++ .|..|++-|...++. ...+.+|.+-|.+
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~-~~a~sghtghila 188 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG-FHALSGHTGHILA 188 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc-ceeecCCcccEEE
Confidence 99999987654322 234667999999999953 1 345666665 466777778776665 6778899999987
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc-------cccceeEEEEccCCCcEEEeecCCCCCeEEEEECC
Q 040533 179 LKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD-------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 179 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 251 (364)
+ ++-++-++++|+.|.+|++||++-... +..+.. ..+.|.+++..|.| .++++|- .|....+||++
T Consensus 189 l-yswn~~m~~sgsqdktirfwdlrv~~~---v~~l~~~~~~~glessavaav~vdpsg-rll~sg~--~dssc~lydir 261 (350)
T KOG0641|consen 189 L-YSWNGAMFASGSQDKTIRFWDLRVNSC---VNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGH--ADSSCMLYDIR 261 (350)
T ss_pred E-EEecCcEEEccCCCceEEEEeeeccce---eeeccCcccCCCcccceeEEEEECCCc-ceeeecc--CCCceEEEEee
Confidence 6 455788999999999999999986543 333321 23679999999999 6888876 89999999999
Q ss_pred CCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC----ceeeeccccccceeEEeecCCCCEEE
Q 040533 252 KGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM----TKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 252 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
.++.++.+..+ ..|.++.|+|...|++++.- |..|++-|+... -++.....|...+..+.|+|..-.++
T Consensus 262 g~r~iq~f~phsadir~vrfsp~a~yllt~sy------d~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfi 335 (350)
T KOG0641|consen 262 GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY------DMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFI 335 (350)
T ss_pred CCceeeeeCCCccceeEEEeCCCceEEEEecc------cceEEEeecccchhhcCceEEEEeccCceEEEEecCccceee
Confidence 99999988654 77999999999999998854 999999998632 22334456888899999999998999
Q ss_pred EEeCCCcEEEEEee
Q 040533 327 SAAADETLRFWEAF 340 (364)
Q Consensus 327 ~~~~dg~i~vw~~~ 340 (364)
+.+.|.++.+|-+.
T Consensus 336 sssadkt~tlwa~~ 349 (350)
T KOG0641|consen 336 SSSADKTATLWALN 349 (350)
T ss_pred eccCcceEEEeccC
Confidence 99999999999764
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=6e-29 Score=200.31 Aligned_cols=260 Identities=17% Similarity=0.271 Sum_probs=218.9
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 167 (364)
..++++...|....+++|+.|..+.++|..+++.+..+++|...|+.+.|+| +...+++++.|..|++|....... ..
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~-~~ 297 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSE-PT 297 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccccC-cc
Confidence 4678888888878999999999999999999999999999999999999999 999999999999999999876664 56
Q ss_pred eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc--cccceeEEEEccCCCcEEEeecCCCCCeE
Q 040533 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD--HRAAVKALAWCPYQFNVLASGGGTQDGCI 245 (364)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 245 (364)
....|..+|+.+..+|.|.||++++.|++..+.|++.+.. +..... ..-.+++.+|+||| .++.+|. .|+.|
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~---lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt--~d~~v 371 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ---LTVVSDETSDVEYTSAAFHPDG-LIFGTGT--PDGVV 371 (506)
T ss_pred ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE---EEEEeeccccceeEEeeEcCCc-eEEeccC--CCceE
Confidence 6778999999999999999999999999999999887654 333222 23458999999999 7888866 99999
Q ss_pred EEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc-cceeEEeecCCCC
Q 040533 246 KIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT-SRILELSQSPDGL 323 (364)
Q Consensus 246 ~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~ 323 (364)
++||+.++..+..+..+ ++|..++|+.+|-+|+++. +|+.|++||++..+...++.... .++.++.|.+.|.
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a------dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA------DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGT 445 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe------cCCeEEEEEehhhcccceeeccccccceeEEEcCCCC
Confidence 99999999988888765 7899999999999999985 48899999999988777776433 4799999999999
Q ss_pred EEEEEeCCCcEEEEEee--CCCCCcceeccCCceeeeeec
Q 040533 324 TVVSAAADETLRFWEAF--GPSGSGDFVSHLDGLLSLKVS 361 (364)
Q Consensus 324 ~l~~~~~dg~i~vw~~~--~~~~~~~~~~~~~~v~~~~~s 361 (364)
+|+.++.|=.|++++-. +-.....+..|.+..+++.|.
T Consensus 446 ~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 446 YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred eEEeecceeEEEEEecccccceeeehhhhcccccceeeec
Confidence 99999776555555532 334455666777778888775
No 106
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.4e-28 Score=209.87 Aligned_cols=303 Identities=15% Similarity=0.222 Sum_probs=236.1
Q ss_pred eecccCCC--ccEEEEEeCCeEEEEECCCCc-eeeeeeecCCCCCceEEEEcCC-----------CCEEEEEecCCcEEE
Q 040533 48 SNMMDWGR--NNILAIALGLELYLWKQENGE-VQKLLKVTGEDDFPTSISWSQD-----------AKTLAVGYMASKLQL 113 (364)
Q Consensus 48 ~~~~~~~~--~~~~~~~~~~~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~s~~-----------~~~l~~~~~dg~i~i 113 (364)
..++.|++ +.+.++-.|..++|||+..-. +-+...+-.|..-|..+.--|. ...+.+++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 34455665 457777889999999997643 2233333467777777665541 125889999999999
Q ss_pred EecCCcceeee-------------------------------------eecCCCcEEEEEeecCCCCEEEEeeCCCcEEE
Q 040533 114 WDAETSKLIRN-------------------------------------LEGHDKRVATASWNHWNGHILTSGSQDKSIIN 156 (364)
Q Consensus 114 w~~~~~~~~~~-------------------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 156 (364)
|+++.+..-.. .-.....+.+++.+| ++++|++|...|.+++
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRV 485 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceEE
Confidence 99975211000 011235789999999 9999999999999999
Q ss_pred EEcccCcceeeeeecccCcEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC--C
Q 040533 157 HDVRVSNNVTSRINAHTAEVCGLKWSN---EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ--F 231 (364)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~ 231 (364)
|++...+. ...+.+|+..|.|+.|+. ..++||+++.|..|.+||+... ...++++.+|...|+++.|...| .
T Consensus 486 y~Lq~l~~-~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn--y~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 486 YDLQELEY-TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN--YDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred EEehhhhh-hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--cchhhhhcccccceeEEEEeecCCce
Confidence 99986664 667889999999999986 3579999999999999998653 56688899999999999998776 3
Q ss_pred cEEEeecCCCCCeEEEEECCC---CeEEEEE---ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeee
Q 040533 232 NVLASGGGTQDGCIKIWNVQK---GTCIHSV---DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE 305 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~~---~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 305 (364)
.++.+| .|..|.+--.++ +.....- -.+..+..++..|..++++++.. |..|+||++.++++.+.
T Consensus 563 ~MiscG---ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ------Drnirif~i~sgKq~k~ 633 (1080)
T KOG1408|consen 563 KMISCG---ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ------DRNIRIFDIESGKQVKS 633 (1080)
T ss_pred EEEecc---CchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec------ccceEEEeccccceeee
Confidence 444444 577665433332 2222111 12356899999999999999855 99999999999999999
Q ss_pred ccc---cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 306 LQH---QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 306 ~~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|++ |++....+...|.|-|||+...|.++.++|+.+++.+....+|...|++|.|++.
T Consensus 634 FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 634 FKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND 694 (1080)
T ss_pred ecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc
Confidence 875 6677888999999999999999999999999999999999999999999999985
No 107
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.4e-29 Score=187.34 Aligned_cols=243 Identities=22% Similarity=0.389 Sum_probs=197.9
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCce-eeeeeecCCCCCceEEEEcC--CCCEEEEEecCCcEEEEecCCcce--e
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEV-QKLLKVTGEDDFPTSISWSQ--DAKTLAVGYMASKLQLWDAETSKL--I 122 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~-~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~--~ 122 (364)
-..+++...+++++++|+.|+|+....+.. ..+.++.+|.++|..++|.. .|.+||+++.||.|.||.-+.++- .
T Consensus 16 da~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~ 95 (299)
T KOG1332|consen 16 DAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA 95 (299)
T ss_pred HhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh
Confidence 445777778899999999999999987655 67788999999999999986 899999999999999999887743 3
Q ss_pred eeeecCCCcEEEEEeecCC-CCEEEEeeCCCcEEEEEcccCc--ceeeeeecccCcEEEEEEcCC---C-----------
Q 040533 123 RNLEGHDKRVATASWNHWN-GHILTSGSQDKSIINHDVRVSN--NVTSRINAHTAEVCGLKWSNE---G----------- 185 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~---~----------- 185 (364)
.....|...|++++|.|.+ +-.|++++.||.|.+.+.+... ........|.-.|++++|.|. |
T Consensus 96 ~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~ 175 (299)
T KOG1332|consen 96 YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKV 175 (299)
T ss_pred hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccc
Confidence 4556799999999999832 4588999999999999988662 223456689999999999995 4
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC---CcEEEeecCCCCCeEEEEECCCCeE--EEEE-
Q 040533 186 NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ---FNVLASGGGTQDGCIKIWNVQKGTC--IHSV- 259 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~- 259 (364)
+.|++|+.|..|+||+.... ......++.+|.+.|+.++|.|.- ...+++++ +||++.||..+.... ..++
T Consensus 176 krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S--qDg~viIwt~~~e~e~wk~tll 252 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS--QDGTVIIWTKDEEYEPWKKTLL 252 (299)
T ss_pred ceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEec--CCCcEEEEEecCccCccccccc
Confidence 57999999999999998875 345556689999999999999964 45677876 999999998763211 1111
Q ss_pred -ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC
Q 040533 260 -DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 260 -~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
+....+..+.||..|..|+++.+ |+.+.+|.-..
T Consensus 253 ~~f~~~~w~vSWS~sGn~LaVs~G------dNkvtlwke~~ 287 (299)
T KOG1332|consen 253 EEFPDVVWRVSWSLSGNILAVSGG------DNKVTLWKENV 287 (299)
T ss_pred ccCCcceEEEEEeccccEEEEecC------CcEEEEEEeCC
Confidence 23466999999999999999866 99999997543
No 108
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.1e-28 Score=214.09 Aligned_cols=259 Identities=16% Similarity=0.258 Sum_probs=215.0
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc-ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS-KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
.|....+.++|.|+|.+|++++.||.|++|+.... +....+..+...|.+++- ...+|++|+.+++|.+|.+.++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee---cccceEEeeccceEEEeeCCCCC
Confidence 67888999999999999999999999999997766 555555558888988887 66799999999999999998776
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
. -..+....-++.+++|+.+|+++|.|+.|-.|++.++..... ...+++|.++|.++.|+|.+. ++++.+ -||
T Consensus 88 ~-~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~---~~~lrgh~apVl~l~~~p~~~-fLAvss--~dG 160 (933)
T KOG1274|consen 88 E-DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ---EKVLRGHDAPVLQLSYDPKGN-FLAVSS--CDG 160 (933)
T ss_pred c-cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch---heeecccCCceeeeeEcCCCC-EEEEEe--cCc
Confidence 4 334555678899999999999999999999999999876544 778899999999999999995 555544 699
Q ss_pred eEEEEECCCCeEEEEEec---------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc--cccc
Q 040533 244 CIKIWNVQKGTCIHSVDT---------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH--QTSR 312 (364)
Q Consensus 244 ~i~i~d~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~ 312 (364)
.|++||+.++.+..++.. ...+..++|+|+|..+++... ++.|++|+..+++....+.. +...
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~------d~~Vkvy~r~~we~~f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV------DNTVKVYSRKGWELQFKLRDKLSSSK 234 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc------CCeEEEEccCCceeheeecccccccc
Confidence 999999999887776642 234678999999766665543 99999999999998888764 4455
Q ss_pred eeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 313 ILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 313 i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+..++|+|+|+|||+++.||.|.|||+++-.. ......|.+++|-|.
T Consensus 235 ~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPN 281 (933)
T ss_pred eEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCC
Confidence 89999999999999999999999999998322 223567899999874
No 109
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.5e-28 Score=199.46 Aligned_cols=267 Identities=18% Similarity=0.263 Sum_probs=218.8
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee----e-------------e-ecCCCcEEEEEeecCCC
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR----N-------------L-EGHDKRVATASWNHWNG 142 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~----~-------------~-~~~~~~v~~~~~~~~~~ 142 (364)
.....|.-+|.+++++|+..+.++++.+|+|.=|++.+++..+ . - +.|...+.+++.++ ++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-Dg 214 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-DG 214 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-CC
Confidence 3455899999999999999999999999999999998876431 0 1 26778899999999 99
Q ss_pred CEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccccee
Q 040533 143 HILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222 (364)
Q Consensus 143 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 222 (364)
++|++|+.|..|.||+.++.+. +..+.+|.+.|.+++|-.....+++++.|+.|++|++... ..+.++.+|.+.|.
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~---s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH-VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL---SYVETLYGHQDGVL 290 (479)
T ss_pred cEEEecCCCceEEEecCcccch-hhcccccccceeeeeeecCccceeeeecCCceEEEehhHh---HHHHHHhCCcccee
Confidence 9999999999999999998886 6678999999999999988889999999999999997764 34778889999999
Q ss_pred EEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 223 ALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
++....-+ .++.+|+ .|+++++|++.....+-...+.+.+-+++|-.+..+ ++| +++|.|.+|++.+.++
T Consensus 291 ~IdaL~re-R~vtVGg--rDrT~rlwKi~eesqlifrg~~~sidcv~~In~~Hf-vsG------SdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 291 GIDALSRE-RCVTVGG--RDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHF-VSG------SDNGSIALWSLLKKKP 360 (479)
T ss_pred eechhccc-ceEEecc--ccceeEEEeccccceeeeeCCCCCeeeEEEecccce-eec------cCCceEEEeeecccCc
Confidence 99877655 5666665 899999999965544444445568888888766554 444 5699999999999888
Q ss_pred eeecc-cc-----------ccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC----CcceeccCCceeeeeeccC
Q 040533 303 WGELQ-HQ-----------TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG----SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 303 ~~~~~-~~-----------~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~v~~~~~sp~ 363 (364)
+...+ +| ...|++++..|...++|+|+.+|.|++|.+..+.. +..+. -.+.|++|+|++.
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~s 436 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNS 436 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccC
Confidence 87654 12 12799999999999999999999999999998843 22222 4678999998864
No 110
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=214.00 Aligned_cols=243 Identities=20% Similarity=0.308 Sum_probs=208.6
Q ss_pred EEEEc-CCCCEEEEEecCCcEEEEecCCcc------eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc-
Q 040533 92 SISWS-QDAKTLAVGYMASKLQLWDAETSK------LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN- 163 (364)
Q Consensus 92 ~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~- 163 (364)
.+..+ |.+++|++|+.||.|++|+..... .+..++.|...|+.+.... +++.|++++.|-+|++|+.....
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~ 107 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNT 107 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcc
Confidence 34443 467789999999999999986432 3667888999999999887 88999999999999999998764
Q ss_pred ceeeeeecccCcEEEEEE-cCCCCEEEEEeCCCeEEEEeCCCCCC-------CcceEEec-ccccceeEEEEccCCCcEE
Q 040533 164 NVTSRINAHTAEVCGLKW-SNEGNLLASGGDDNLVHVWDHSKMSS-------SKCLHRFR-DHRAAVKALAWCPYQFNVL 234 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~-~~~~~v~~~~~~~~~~~~~ 234 (364)
.....+..|.+.|.|+++ -++..++|+|+-|+.|.+||++.+.. ......+. ++...|++++.++.+ .++
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~i 186 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TII 186 (735)
T ss_pred hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEE
Confidence 446778899999999999 77888999999999999999986522 11222333 678899999999988 788
Q ss_pred EeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccce
Q 040533 235 ASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI 313 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 313 (364)
++|+ .++.+++||.++++.+..+.++ ..|..+..+++|..+++++. ||+|++||+...+++.++..|...|
T Consensus 187 vsGg--tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS------DgtIrlWdLgqQrCl~T~~vH~e~V 258 (735)
T KOG0308|consen 187 VSGG--TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS------DGTIRLWDLGQQRCLATYIVHKEGV 258 (735)
T ss_pred EecC--cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC------CceEEeeeccccceeeeEEeccCce
Confidence 8876 8999999999999988888765 67999999999999999855 9999999999999999999999999
Q ss_pred eEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 314 LELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
.++..+|+-..+++|+.||.|..=|+.+...
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence 9999999999999999999999999988644
No 111
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.8e-28 Score=208.28 Aligned_cols=269 Identities=20% Similarity=0.339 Sum_probs=222.0
Q ss_pred ecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceE-EEEcC-CCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 49 NMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTS-ISWSQ-DAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 49 ~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~-~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
..++..++ -+++++.|+++++|+-..++......+.+|.+.|.+ +++-+ ++-.+++|+.|+.|.+|......+...+
T Consensus 18 r~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L 97 (745)
T KOG0301|consen 18 RAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL 97 (745)
T ss_pred heeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhh
Confidence 33333344 377788899999999988887777777788888877 88875 4556999999999999999999999999
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.+|...|.+++... ++. +++||.|.++++|.... +...+.+|+..|.+++.-|++ .+++|+.|.+|++|.-
T Consensus 98 kgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--- 168 (745)
T KOG0301|consen 98 KGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--- 168 (745)
T ss_pred hccccceeeeecCC-cCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC---
Confidence 99999999998764 444 99999999999998642 355688999999999999987 8999999999999983
Q ss_pred CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCC
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFS 284 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~ 284 (364)
.+.++++.+|.+.|+.+++-+++ .++.++ .||.|++|++ +++++..+. +.+-+.++....++..++++
T Consensus 169 --~~~l~tf~gHtD~VRgL~vl~~~-~flScs---NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~---- 237 (745)
T KOG0301|consen 169 --GTLLKTFSGHTDCVRGLAVLDDS-HFLSCS---NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVST---- 237 (745)
T ss_pred --CchhhhhccchhheeeeEEecCC-CeEeec---CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEe----
Confidence 35688999999999999999986 455443 7999999999 566666554 45779999988888887776
Q ss_pred ccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 285 SSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
++|++++||+.. ++.+.+......|+++.+-++|. +++|++||.||||.....
T Consensus 238 --gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 238 --GEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred --cCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 569999999977 66777766667899999988885 778899999999987743
No 112
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.2e-29 Score=215.53 Aligned_cols=239 Identities=15% Similarity=0.260 Sum_probs=190.8
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCC--------------------------------Cc----------------
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQEN--------------------------------GE---------------- 76 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~--------------------------------~~---------------- 76 (364)
.+-++.||+++ ++++|.|+.|+||.+.. ..
T Consensus 269 aIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~ 348 (712)
T KOG0283|consen 269 AIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCV 348 (712)
T ss_pred cEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccc
Confidence 36677888864 66778899999998765 00
Q ss_pred ----------eeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEE
Q 040533 77 ----------VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILT 146 (364)
Q Consensus 77 ----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 146 (364)
..++..+.||.+.|.++.||.+ ++|++++.|.+|++|++...++++.|. |..-|+|++|+|.|.++|+
T Consensus 349 ~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFi 426 (712)
T KOG0283|consen 349 LLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFI 426 (712)
T ss_pred cCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEe
Confidence 0122345689999999999965 589999999999999999999999998 9999999999999999999
Q ss_pred EeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc------cccc
Q 040533 147 SGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD------HRAA 220 (364)
Q Consensus 147 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~ 220 (364)
+|+-||.|+||++...+ +.....-..-|++++|.|+|+..++|+.+|.+++|+....+... -..+.. ....
T Consensus 427 SGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~-~~~I~~~~~Kk~~~~r 503 (712)
T KOG0283|consen 427 SGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS-DFHIRLHNKKKKQGKR 503 (712)
T ss_pred ecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE-eeeEeeccCccccCce
Confidence 99999999999997554 44444555889999999999999999999999999987643211 111111 1237
Q ss_pred eeEEEEccCCCc-EEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 221 VKALAWCPYQFN-VLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 221 v~~~~~~~~~~~-~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
|+.+.|.|.... +|++. .|..|+|||.++..++..+++. ..-....|+.+|++++++ ++|..|++|+
T Consensus 504 ITG~Q~~p~~~~~vLVTS---nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~------seDs~VYiW~ 574 (712)
T KOG0283|consen 504 ITGLQFFPGDPDEVLVTS---NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA------SEDSWVYIWK 574 (712)
T ss_pred eeeeEecCCCCCeEEEec---CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe------ecCceEEEEe
Confidence 999999987665 66654 6999999999988888777643 335667899999999998 4599999999
Q ss_pred CCC
Q 040533 297 YPH 299 (364)
Q Consensus 297 ~~~ 299 (364)
+..
T Consensus 575 ~~~ 577 (712)
T KOG0283|consen 575 NDS 577 (712)
T ss_pred CCC
Confidence 743
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.4e-29 Score=186.74 Aligned_cols=253 Identities=21% Similarity=0.315 Sum_probs=199.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc---ceeeeeecCCCcEEEEEe-ecCCCCEEEEeeCCCcEEEEEcc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS---KLIRNLEGHDKRVATASW-NHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
.|++.|.++...-.|++||+++.|++|+|+..... +++.++.+|.++|..++| +|.-|.+|++++.||.|.||.-.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 78999999998889999999999999999998765 467889999999999999 57779999999999999999987
Q ss_pred cCcc-eeeeeecccCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccC---C----
Q 040533 161 VSNN-VTSRINAHTAEVCGLKWSNE--GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY---Q---- 230 (364)
Q Consensus 161 ~~~~-~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~---- 230 (364)
+++- .......|...|++++|.|. |-.|++++.||.|.+.+.+.............|.-.|++++|.|. |
T Consensus 89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~ 168 (299)
T KOG1332|consen 89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVD 168 (299)
T ss_pred CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccc
Confidence 6641 13345679999999999994 568999999999999998875333344555679999999999986 3
Q ss_pred ------CcEEEeecCCCCCeEEEEECCCCeE--EEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC-
Q 040533 231 ------FNVLASGGGTQDGCIKIWNVQKGTC--IHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM- 300 (364)
Q Consensus 231 ------~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~- 300 (364)
..-|++|+ .|+.|+||+..+++- .+++.. ...|+.++|.|.-.+.-.. ++++++||.+.||-....
T Consensus 169 ~~~~~~~krlvSgG--cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~--iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 169 QGPAAKVKRLVSGG--CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST--IASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred cCcccccceeeccC--CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee--eEEecCCCcEEEEEecCcc
Confidence 13478877 899999999988632 233443 4669999999976432221 334577999999987632
Q ss_pred ce--eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 301 TK--WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 301 ~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
++ ...+......+..+.||+.|.+|+.++.|+.|.+|.-..
T Consensus 245 e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 245 EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 11 112333457799999999999999999999999998553
No 114
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.1e-29 Score=209.35 Aligned_cols=272 Identities=16% Similarity=0.313 Sum_probs=226.4
Q ss_pred EEEEEeCCeEEEEECCCCce----eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc--ceeeeeecCCCc
Q 040533 58 ILAIALGLELYLWKQENGEV----QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS--KLIRNLEGHDKR 131 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~ 131 (364)
+++++.||.|++|+...... .....++.|.+.|..+....+++.|++++.|-+|++|+...+ -+..++..|...
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DY 119 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDY 119 (735)
T ss_pred EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccch
Confidence 89999999999999865433 135566789999999999999999999999999999999877 567788899999
Q ss_pred EEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc---------eeeeee-cccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 132 VATASWNHWNGHILTSGSQDKSIINHDVRVSNN---------VTSRIN-AHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
|.|++.-..+..++|+|+-|+.|.+||++++.. ....+. ++..+|.+++.++.|..+++|+..+.+++||
T Consensus 120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD 199 (735)
T KOG0308|consen 120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD 199 (735)
T ss_pred heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEec
Confidence 999999433899999999999999999996622 111222 7888999999999999999999999999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeee
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSG 280 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~ 280 (364)
.++.. .+..+++|...|..+..+++|..++.++ .||+|++||+...+++.++..+ ..+.++..+|+-..+++|
T Consensus 200 prt~~---kimkLrGHTdNVr~ll~~dDGt~~ls~s---SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG 273 (735)
T KOG0308|consen 200 PRTCK---KIMKLRGHTDNVRVLLVNDDGTRLLSAS---SDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSG 273 (735)
T ss_pred ccccc---ceeeeeccccceEEEEEcCCCCeEeecC---CCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEec
Confidence 87754 4888899999999999999997766643 6999999999999999998655 559999999999999988
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
.. |+.|+.=|+++......+-....+|..+..+...+-+-+++.|+.|+-|....
T Consensus 274 ~r------d~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 274 GR------DGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred CC------CCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 55 99999999988654444444556777787776555557778899999997654
No 115
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.7e-28 Score=188.17 Aligned_cols=282 Identities=13% Similarity=0.256 Sum_probs=228.4
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEE
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHIL 145 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 145 (364)
.|..|...+-.......+.+|.+.|..++-......+.+++.|.+.+||.+++++++.++.+|.+.|+++.|++ .+.++
T Consensus 127 ivssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~~L~ 205 (481)
T KOG0300|consen 127 IVSSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-SGLLL 205 (481)
T ss_pred heeeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc-ccceE
Confidence 33344433333444556779999999999888788999999999999999999999999999999999999999 99999
Q ss_pred EEeeCCCcEEEEEc------ccC---------------------------------cceeeeeecccCcEEEEEEcCCCC
Q 040533 146 TSGSQDKSIINHDV------RVS---------------------------------NNVTSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 146 ~~~~~dg~i~~~d~------~~~---------------------------------~~~~~~~~~~~~~v~~~~~~~~~~ 186 (364)
++++.|++..||.. ... ..++..+.+|...|.+..|-..|+
T Consensus 206 lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~ 285 (481)
T KOG0300|consen 206 LTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ 285 (481)
T ss_pred EEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc
Confidence 99999999999962 110 023456778999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEecC-CC
Q 040533 187 LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDTK-AQ 264 (364)
Q Consensus 187 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~-~~ 264 (364)
.+++++.|.+..+||++++ .++..+.+|....+.++-+|.. .++++.+ .|.+.++||++.. ..+..++++ ..
T Consensus 286 Q~vTaSWDRTAnlwDVEtg---e~v~~LtGHd~ELtHcstHptQ-rLVvTsS--rDtTFRLWDFReaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETG---EVVNILTGHDSELTHCSTHPTQ-RLVVTSS--RDTTFRLWDFREAIQSVAVFQGHTDT 359 (481)
T ss_pred eeeeeeccccceeeeeccC---ceeccccCcchhccccccCCcc-eEEEEec--cCceeEeccchhhcceeeeecccccc
Confidence 9999999999999998875 4588899999999999999987 6777766 8999999999853 234455554 67
Q ss_pred eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc-eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 265 ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT-KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
|++..|..+.+.+ +| ++|.+|++||+++.+ ++.+++ ..+++..++.+..+..++.--.+..|++||+....
T Consensus 360 VTS~vF~~dd~vV-Sg------SDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 360 VTSVVFNTDDRVV-SG------SDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred eeEEEEecCCcee-ec------CCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 9999998876644 33 669999999998754 455554 45788999999888899998888999999998765
Q ss_pred CCc----ceeccCCceeeeeecc
Q 040533 344 GSG----DFVSHLDGLLSLKVSP 362 (364)
Q Consensus 344 ~~~----~~~~~~~~v~~~~~sp 362 (364)
... .-.+|...|.|++|..
T Consensus 432 laRlPrtsRqgHrRMV~c~AW~e 454 (481)
T KOG0300|consen 432 LARLPRTSRQGHRRMVTCCAWLE 454 (481)
T ss_pred cccCCcccccccceeeeeeeccc
Confidence 432 2348999999999973
No 116
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=8.1e-28 Score=197.42 Aligned_cols=276 Identities=18% Similarity=0.254 Sum_probs=220.5
Q ss_pred eecccCCC-ccEEEEEeCCeEEEEECCCCce-eeeee--ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee-
Q 040533 48 SNMMDWGR-NNILAIALGLELYLWKQENGEV-QKLLK--VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI- 122 (364)
Q Consensus 48 ~~~~~~~~-~~~~~~~~~~~i~iw~~~~~~~-~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~- 122 (364)
+.++..+. .+.+-.+..|.|+|||+..... ..+.. +......|.++.+.|||+.|++|++-.++.|||+......
T Consensus 422 VcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpri 501 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRI 501 (705)
T ss_pred EEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcch
Confidence 44455544 4455556679999999875422 11222 2234678999999999999999999999999999765433
Q ss_pred -eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 123 -RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 123 -~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
..+........+++.+| +.++.+++..||.|.|||+.+.. ++..+++|.+.+.|+..+++|..|-+|+-|.+|+.||
T Consensus 502 kaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 502 KAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWD 579 (705)
T ss_pred hhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCceeecCCCccceeehh
Confidence 33443445677889999 99999999999999999998554 6889999999999999999999999999999999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeec
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
++.+.. +... ...+.|.++..+|.+..+++ |- .++.+.+......+..+...+.+-|.++.|.+.|+++++.
T Consensus 580 lregrq---lqqh-dF~SQIfSLg~cP~~dWlav-GM--ens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvSt- 651 (705)
T KOG0639|consen 580 LREGRQ---LQQH-DFSSQIFSLGYCPTGDWLAV-GM--ENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVST- 651 (705)
T ss_pred hhhhhh---hhhh-hhhhhheecccCCCccceee-ec--ccCcEEEEecCCccceeecccccEEEEEEecccCceeeec-
Confidence 987543 2221 23578999999999965554 43 7889999888766655555667889999999999999887
Q ss_pred cCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
+.|+.+..|...-|..+.+.+. .+.|.++.+|.|.++++||+.|....||.+
T Consensus 652 -----GkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 652 -----GKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -----CchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4599999999999988887764 467999999999999999999999888876
No 117
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.96 E-value=2e-27 Score=194.86 Aligned_cols=292 Identities=14% Similarity=0.177 Sum_probs=224.0
Q ss_pred cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEE--ecCCcEEEEecCCcc---eeeeeecCCCc
Q 040533 57 NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVG--YMASKLQLWDAETSK---LIRNLEGHDKR 131 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iw~~~~~~---~~~~~~~~~~~ 131 (364)
++.+++....+++||+...+....+.-......+.++.|+.... |+++ +.|..+++|.-. |+ ....-......
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~gd~ 81 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTGDN 81 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEeccc-CCCCccceeeccccch
Confidence 46777888899999998766544333222234488999987654 5444 357788898643 33 22111111223
Q ss_pred EEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcce
Q 040533 132 VATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCL 211 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 211 (364)
-.|++... ...++++|+..+.|+|||++ .+.+.+.+.+|...|+++.++....+||+++..|.|.+..+.+... .
T Consensus 82 ~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~---t 156 (673)
T KOG4378|consen 82 AFCVACAS-QSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK---T 156 (673)
T ss_pred HHHHhhhh-cceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc---c
Confidence 34444444 45799999999999999999 4556788899999999999999999999999999999999877544 3
Q ss_pred EEeccc-ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEE--ecCCCeEEEEEcCCccceeeeccCCccCC
Q 040533 212 HRFRDH-RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV--DTKAQICGLEWNRHHKEILSGHGFSSSGD 288 (364)
Q Consensus 212 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 288 (364)
..+... ...|+-+.|+|..+.+|.+++ .+|.|.+||+....++..+ .+..+...++|+|....|++..+ .
T Consensus 157 t~f~~~sgqsvRll~ys~skr~lL~~as--d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG-----~ 229 (673)
T KOG4378|consen 157 TTFTIDSGQSVRLLRYSPSKRFLLSIAS--DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG-----Y 229 (673)
T ss_pred cceecCCCCeEEEeecccccceeeEeec--cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec-----c
Confidence 333322 345678999999999999987 9999999999887777655 35578899999999988887654 4
Q ss_pred CCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC-CCcceeccCCceeeeeeccC
Q 040533 289 GQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS-GSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 289 ~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~v~~~~~sp~ 363 (364)
|..|.+||.........+. ...+...++|+++|.+|+.|+..|.|..||++..+ ++.++..|...|++++|-|.
T Consensus 230 Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 230 DKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred cceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 9999999998766665554 34678999999999999999999999999998654 56777799999999999875
No 118
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=3.7e-27 Score=198.69 Aligned_cols=278 Identities=19% Similarity=0.279 Sum_probs=209.3
Q ss_pred cEEEEE-eCCeEEEEECCCCcee----eeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee--eecCC
Q 040533 57 NILAIA-LGLELYLWKQENGEVQ----KLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN--LEGHD 129 (364)
Q Consensus 57 ~~~~~~-~~~~i~iw~~~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~ 129 (364)
.+|+++ .+|.|.++|....... ++.....|...|..+.|.|....|++++.|.++++||+++.++... +.+|.
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~ 144 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT 144 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc
Confidence 466666 5799999998765433 2334458999999999999667899999999999999999988876 88999
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc--------------------------eeeeeecccCcEEE---EE
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN--------------------------VTSRINAHTAEVCG---LK 180 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--------------------------~~~~~~~~~~~v~~---~~ 180 (364)
..|.+++|.|.+...|++|+.||.|.|||++.... ......++...|.+ +.
T Consensus 145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv 224 (720)
T KOG0321|consen 145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV 224 (720)
T ss_pred cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence 99999999998999999999999999999874320 01111233444444 45
Q ss_pred EcCCCCEEEEEeC-CCeEEEEeCCCCCCC-----cceEEeccc---ccceeEEEEccCCCcEEEeecCCCCCeEEEEECC
Q 040533 181 WSNEGNLLASGGD-DNLVHVWDHSKMSSS-----KCLHRFRDH---RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 181 ~~~~~~~l~~~~~-d~~i~iwd~~~~~~~-----~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 251 (364)
+..|...||+++. |+.|++||+++.... .....+..| .-.+.++..+..|.++++++ .|+.|++||+.
T Consensus 225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC---tD~sIy~ynm~ 301 (720)
T KOG0321|consen 225 LFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC---TDNSIYFYNMR 301 (720)
T ss_pred EEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe---cCCcEEEEecc
Confidence 5567789999887 999999999975331 112222223 33577888888889999987 49999999998
Q ss_pred CCe--EEEEEecC---CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-eeeccccccceeEEeecCCC-CE
Q 040533 252 KGT--CIHSVDTK---AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-WGELQHQTSRILELSQSPDG-LT 324 (364)
Q Consensus 252 ~~~--~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~~-~~ 324 (364)
+.. ++..+.+. ..-..-..+|++.++++|.. |...++|.+.+.+. ...+.+|...|++++|.|.. .-
T Consensus 302 s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs------d~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~ 375 (720)
T KOG0321|consen 302 SLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS------DEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP 375 (720)
T ss_pred ccCcCchhhccCcccceeeeeeecCCCCceEeccCC------CcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC
Confidence 643 23333222 11233467899999999865 99999999987654 45677999999999998843 34
Q ss_pred EEEEeCCCcEEEEEeeCCC
Q 040533 325 VVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 325 l~~~~~dg~i~vw~~~~~~ 343 (364)
+++++.|..+++|++..+-
T Consensus 376 v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 376 VATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ceeeccCcceEEEeccCch
Confidence 7778999999999996653
No 119
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=3.2e-27 Score=187.23 Aligned_cols=224 Identities=25% Similarity=0.497 Sum_probs=181.4
Q ss_pred ccEEEEE--eCCeEEEEECCC--------------CceeeeeeecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEecCC
Q 040533 56 NNILAIA--LGLELYLWKQEN--------------GEVQKLLKVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDAET 118 (364)
Q Consensus 56 ~~~~~~~--~~~~i~iw~~~~--------------~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~ 118 (364)
+..++++ ..|.|+||++.. .+..+++++.+|...=+.++|||-. ..|++|.--+.|++|...+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence 4455554 468999999752 2345677888999999999999932 3588888888999999988
Q ss_pred ccee---eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc-ceeeeeecccCcEEEEEEcCCCCEEEEEeCC
Q 040533 119 SKLI---RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN-NVTSRINAHTAEVCGLKWSNEGNLLASGGDD 194 (364)
Q Consensus 119 ~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 194 (364)
+... ..+.+|...|-.++|+|.....|++|+.||+|+|||++.+. ......+.|.+.|+.++|+....+||+|+.|
T Consensus 244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd 323 (440)
T KOG0302|consen 244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD 323 (440)
T ss_pred CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCC
Confidence 7543 34567999999999999888999999999999999999873 2233447899999999999988899999999
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-------------------E
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT-------------------C 255 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-------------------~ 255 (364)
|+++|||+|..+..+++..++-|..+|+++.|+|.....+++++ .|.+|.+||+.... +
T Consensus 324 Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg--~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQL 401 (440)
T KOG0302|consen 324 GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG--EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQL 401 (440)
T ss_pred ceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc--CCCcEEEEEeeccCChhhhccccccchhcCCcee
Confidence 99999999999988999999999999999999999888888876 89999999985321 1
Q ss_pred EEEEecCCCeEEEEEcCCccceeeec
Q 040533 256 IHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 256 ~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
+.....+..+..+.|+++-.-+++.+
T Consensus 402 LFVHqGQke~KevhWH~QiPG~lvsT 427 (440)
T KOG0302|consen 402 LFVHQGQKEVKEVHWHRQIPGLLVST 427 (440)
T ss_pred EEEecchhHhhhheeccCCCCeEEEe
Confidence 22223345678888988776665543
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=3.7e-25 Score=181.95 Aligned_cols=294 Identities=15% Similarity=0.201 Sum_probs=228.5
Q ss_pred eecccCCC--ccEEEEEeCCeEEEEECCCCceeeeeee-c-CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 48 SNMMDWGR--NNILAIALGLELYLWKQENGEVQKLLKV-T-GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 48 ~~~~~~~~--~~~~~~~~~~~i~iw~~~~~~~~~~~~~-~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
+....|+| .+++.....+.+++|+.+++.+.+...+ + ..+..|.|++|.++|+ +++|.++|.|.||+..+.+..+
T Consensus 203 v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k 281 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISK 281 (626)
T ss_pred EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEe
Confidence 45567777 4688888889999999998876544332 1 2247899999999987 7899999999999998888877
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
....|++.|.+++... +|.+| +|+.|..|..||-.-.......+....++|..++=... -|+.|...+.|..=.+.
T Consensus 282 ~~~aH~ggv~~L~~lr-~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~--di~vGTtrN~iL~Gt~~ 357 (626)
T KOG2106|consen 282 QVHAHDGGVFSLCMLR-DGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKG--DILVGTTRNFILQGTLE 357 (626)
T ss_pred EeeecCCceEEEEEec-CccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCC--cEEEeeccceEEEeeec
Confidence 7779999999999987 67655 59999999999943222222334455677887764332 37778777777665555
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccC
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
+.- .....+|......++.+|+.+. +++++ .|+.+++|+ ..+++.+.....+..++.|+|.| .+++|..
T Consensus 358 ~~f----~~~v~gh~delwgla~hps~~q-~~T~g--qdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~- 426 (626)
T KOG2106|consen 358 NGF----TLTVQGHGDELWGLATHPSKNQ-LLTCG--QDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTA- 426 (626)
T ss_pred CCc----eEEEEecccceeeEEcCCChhh-eeecc--CcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeec-
Confidence 432 3445678889999999998854 55554 899999999 67777777788999999999999 8888865
Q ss_pred CccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee--ccCCceeeeeec
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV--SHLDGLLSLKVS 361 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~v~~~~~s 361 (364)
.|...+.|.++...+..-.. ..+++.++|+|+|.+||.|+.|+.|++|.+.......... -+..+|+.+.||
T Consensus 427 -----~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS 500 (626)
T KOG2106|consen 427 -----TGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS 500 (626)
T ss_pred -----cceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec
Confidence 89999999999666555444 7899999999999999999999999999998766543332 345899999999
Q ss_pred cC
Q 040533 362 PI 363 (364)
Q Consensus 362 p~ 363 (364)
+.
T Consensus 501 ~D 502 (626)
T KOG2106|consen 501 SD 502 (626)
T ss_pred CC
Confidence 85
No 121
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-26 Score=179.50 Aligned_cols=241 Identities=18% Similarity=0.331 Sum_probs=200.3
Q ss_pred EEEEEecCCcEEEEecCCc------------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee
Q 040533 101 TLAVGYMASKLQLWDAETS------------KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR 168 (364)
Q Consensus 101 ~l~~~~~dg~i~iw~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 168 (364)
.+++|++...|.=+++.-. ..+..+..|.+++++++. ++.++++|+.|-+|+|||++...+ ...
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~q-lg~ 78 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQ-LGI 78 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe---cceeEeccCCCCcEEEEeccchhh-hcc
Confidence 3567777766666665321 124556789999999999 899999999999999999997765 666
Q ss_pred eecccCcEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEE
Q 040533 169 INAHTAEVCGLKWSNEGN--LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIK 246 (364)
Q Consensus 169 ~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 246 (364)
+..|.+.|+++.|.+.-. .|++|+.||.|.+|+... ...+..+++|.+.|+.++.+|.++.-+..+ .|+.++
T Consensus 79 ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~---W~~~~slK~H~~~Vt~lsiHPS~KLALsVg---~D~~lr 152 (362)
T KOG0294|consen 79 LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---WELLKSLKAHKGQVTDLSIHPSGKLALSVG---GDQVLR 152 (362)
T ss_pred eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC---eEEeeeecccccccceeEecCCCceEEEEc---CCceee
Confidence 778999999999998654 899999999999999655 467999999999999999999996555555 599999
Q ss_pred EEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEE
Q 040533 247 IWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 247 i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
.||+-+|+.-.........+.+.|+|.|.+++.+. .+.|-+|.+.+.....++... ..+.++.|. ++..|+
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~-------~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~ 223 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG-------RNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELL 223 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEe-------ccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEE
Confidence 99999999888877777777799999999777664 788999999888777766544 456677775 567899
Q ss_pred EEeCCCcEEEEEeeCCCCCcceeccCCceeeeee
Q 040533 327 SAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKV 360 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~ 360 (364)
+|+.|+.|.+||..+......+.+|...|-++.+
T Consensus 224 vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 224 VGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS 257 (362)
T ss_pred EecCCceEEEeccCCCccceeeecchhheeeeEE
Confidence 9999999999999998889999999999988873
No 122
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=3.5e-26 Score=175.90 Aligned_cols=265 Identities=19% Similarity=0.303 Sum_probs=202.0
Q ss_pred CCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCcce----------ee-----eeecCCCcEEEEEeecCCCCEEEEe
Q 040533 85 GEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETSKL----------IR-----NLEGHDKRVATASWNHWNGHILTSG 148 (364)
Q Consensus 85 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~----------~~-----~~~~~~~~v~~~~~~~~~~~~l~~~ 148 (364)
.|.+.|+++...+ .|+++++|+.||.|.+||++.... +. .-.+|.-.|..+.|-|.+..++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 6889999999988 689999999999999999975421 11 1134778899999999889999999
Q ss_pred eCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEE
Q 040533 149 SQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN---EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALA 225 (364)
Q Consensus 149 ~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 225 (364)
+.|.++++||..+.+. ...+ ..++.|.+-+++| ...++|+|..|-.|++.|+..+ ...+.+.+|.+.|.++.
T Consensus 121 SFDhtlKVWDtnTlQ~-a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---s~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQE-AVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---SFSHTLSGHRDGVLAVE 195 (397)
T ss_pred cccceEEEeeccccee-eEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---cceeeeccccCceEEEE
Confidence 9999999999988764 3333 3567788888888 3458889999999999998775 45889999999999999
Q ss_pred EccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEe---------------cCCCeEEEEEcCCccceeeeccCCccCCC
Q 040533 226 WCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVD---------------TKAQICGLEWNRHHKEILSGHGFSSSGDG 289 (364)
Q Consensus 226 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~---------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 289 (364)
|+|..++++++|+ .||.|++||++.. .+...++ +.+.+..++|+.++.++++... |
T Consensus 196 Wsp~~e~vLatgs--aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt------d 267 (397)
T KOG4283|consen 196 WSPSSEWVLATGS--ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT------D 267 (397)
T ss_pred eccCceeEEEecC--CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC------c
Confidence 9999999999987 9999999999864 3443332 2356899999999999988744 9
Q ss_pred CeEEEeeCCCCceeeecc---ccccc---eeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 290 QKLCLWKYPHMTKWGELQ---HQTSR---ILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 290 ~~i~i~d~~~~~~~~~~~---~~~~~---i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
..+++|+..+|+....-- .|... -..+. +.+...++---.++.+.++.+-++..+..+.+|...|.+.++.|.
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~ 346 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPD 346 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCc
Confidence 999999998775432211 11111 01122 223333443445578888888888888888888777887777663
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1e-27 Score=206.18 Aligned_cols=224 Identities=18% Similarity=0.384 Sum_probs=185.8
Q ss_pred eeecccCCC--cc-EEEEEeCCeEEEEECCCC-ceeeeeeecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecCCcce
Q 040533 47 YSNMMDWGR--NN-ILAIALGLELYLWKQENG-EVQKLLKVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 47 ~~~~~~~~~--~~-~~~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
.++.+.|+. .+ +++++..|.|.+||+... +...+..+..|+..++++.|++. ..+|++|+.||.|++||++..+-
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 366788885 24 455667899999999862 22334456699999999999984 56899999999999999999998
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
..++.+..+.|+.+.|+|..++.|+++...|.+.+||++........+.+|.++|.|+.|+|++.+||+|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 88999889999999999988999999999999999999998888888999999999999999999999999999999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEecC-CCeEEEEEcC
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDTK-AQICGLEWNR 272 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~-~~v~~~~~~~ 272 (364)
...... +...++. ...+|..+.|-|...+.|++++--.|-.|+|||++.. -+..++..+ ..++.++|..
T Consensus 249 ~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 249 MTDSRA-KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ccCCCc-cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 876443 3344443 3578999999999999999876446889999999864 344555444 5678888876
No 124
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=188.18 Aligned_cols=284 Identities=13% Similarity=0.179 Sum_probs=215.6
Q ss_pred eeecccCCCc---cEEEEE-eCCeEEEEECCCCc--eeeeeeecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecCCc
Q 040533 47 YSNMMDWGRN---NILAIA-LGLELYLWKQENGE--VQKLLKVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAETS 119 (364)
Q Consensus 47 ~~~~~~~~~~---~~~~~~-~~~~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~ 119 (364)
.+.+++|+|. .+++++ ..|.|-+||+.+.+ ......+..|..+|.++.|+|. ...+++.+.||+|++-|++.+
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~ 267 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN 267 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecch
Confidence 3688999993 355544 56899999995332 2334455689999999999994 467888899999999999876
Q ss_pred ceee--eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCe
Q 040533 120 KLIR--NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNL 196 (364)
Q Consensus 120 ~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 196 (364)
..-. ........+..+.|+. +...++.+..=|...+||+++++.....+..|...|..++++| ...+|++++.|++
T Consensus 268 i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T 346 (498)
T KOG4328|consen 268 ISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT 346 (498)
T ss_pred hhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc
Confidence 4333 3333455677888888 6666666776679999999998876777888999999999999 4568999999999
Q ss_pred EEEEeCCCCCCCc-ceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEEC----CCCeEEEEEecCC------Ce
Q 040533 197 VHVWDHSKMSSSK-CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV----QKGTCIHSVDTKA------QI 265 (364)
Q Consensus 197 i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~----~~~~~~~~~~~~~------~v 265 (364)
++|||+|...... ++.....|...|.+..|+|.+..++.++ .|..|+|||. ....+..++.|.. ..
T Consensus 347 ~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~---~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~ 423 (498)
T KOG4328|consen 347 AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC---QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTP 423 (498)
T ss_pred eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec---cCCceEEeecccccccCCccceeeccCcccccccc
Confidence 9999999876544 3444557999999999999998866654 7999999998 3445556665542 24
Q ss_pred EEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccc-ceeE-EeecCCCCEEEEE-eCCCcEEEEEee
Q 040533 266 CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS-RILE-LSQSPDGLTVVSA-AADETLRFWEAF 340 (364)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~-i~~~~~~~~l~~~-~~dg~i~vw~~~ 340 (364)
....|.|+..++++|.. -..|-|+|-..++.+.++..... .|.+ ..|+|-+..+++| +..|.|+||--+
T Consensus 424 fKA~W~P~~~li~vg~~------~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 424 FKAAWDPDYNLIVVGRY------PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred hhheeCCCccEEEEecc------CcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 56789999999998864 67799999988887877654433 4444 4899988745554 567888888543
No 125
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.8e-26 Score=177.23 Aligned_cols=282 Identities=14% Similarity=0.233 Sum_probs=214.1
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
..++.|++. .++.++.+|.|.|||+.+....+.+ .+|..+|++++||+||+.|++++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l--saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML--SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhh--hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 667778874 3555668999999999998765444 489999999999999999999999999999999999999988
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec---ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA---HTAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
. ...+|+.+.|+|.+.+..++.-.+..-.+-++..+......... .+....+..|.+.|+++++|...|.+.++|.
T Consensus 104 r-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 104 R-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred E-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 8 77899999999966666666655555555555432211111100 1112233468899999999999999999997
Q ss_pred CCCCCCcceEEecccc-cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-------eEE--EEE---ecCCCeEEEE
Q 040533 203 SKMSSSKCLHRFRDHR-AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-------TCI--HSV---DTKAQICGLE 269 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-------~~~--~~~---~~~~~v~~~~ 269 (364)
.+. +++..++-.. ..|..+.++..|+.++.-. .|..|+.|+++.- ++. +.+ -...+-.+++
T Consensus 183 ~t~---e~vas~rits~~~IK~I~~s~~g~~liiNt---sDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 183 ETL---ECVASFRITSVQAIKQIIVSRKGRFLIINT---SDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred chh---eeeeeeeechheeeeEEEEeccCcEEEEec---CCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 764 4466655444 6788999999997666643 6999999998631 111 111 1234567889
Q ss_pred EcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc-cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 270 WNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT-SRILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
|+.+|.|+++++ .....++||....|..++.+.+.. .....+.|+|-...+++- ..|.+++|.....+.
T Consensus 257 fs~dgeYv~a~s-----~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 257 FSGDGEYVCAGS-----ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred ecCCccEEEecc-----ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 999999999886 347889999999999999998877 567889999998888887 678999999876543
No 126
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.4e-26 Score=186.80 Aligned_cols=263 Identities=16% Similarity=0.281 Sum_probs=215.5
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCC--cceeeeeecCCCcEEEEEeecCCCC-EEEEeeCCCcEEEEEcccCc
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAET--SKLIRNLEGHDKRVATASWNHWNGH-ILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~ 163 (364)
.+.|+++.|+|..+.|++|+.||+++||.++. ...++.+.-...+|.+.+|.| +|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-CCceEEEecccceEEEEeeccccc
Confidence 56799999999999999999999999998863 345666666678999999999 777 99999999999999998765
Q ss_pred ce-eeeeeccc-CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC
Q 040533 164 NV-TSRINAHT-AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241 (364)
Q Consensus 164 ~~-~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 241 (364)
.. +....++. ..+..+..++++++|+..+..|.|.+.-..+. +.+..++ -++.|..++|+.+++.++++++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~---eli~s~K-ieG~v~~~~fsSdsk~l~~~~~--- 364 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK---ELITSFK-IEGVVSDFTFSSDSKELLASGG--- 364 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh---hhhheee-eccEEeeEEEecCCcEEEEEcC---
Confidence 21 22233333 45677889999999999999999999886554 3355554 4688999999999988888875
Q ss_pred CCeEEEEECCCCeEEEEEecCCCe--EEEEEcCCccceeeeccCCccCCCCeEEEeeCCC------Cceeeeccccccce
Q 040533 242 DGCIKIWNVQKGTCIHSVDTKAQI--CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH------MTKWGELQHQTSRI 313 (364)
Q Consensus 242 d~~i~i~d~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~------~~~~~~~~~~~~~i 313 (364)
+|.|.+||++...+++.+...+.+ ++++.++++.++++|+ +.|.|.|||.++ .+++..+..-...|
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS------~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I 438 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS------DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI 438 (514)
T ss_pred CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc------CcceEEEeccchhhccCCCCchhhhhhhheee
Confidence 899999999999999998776665 6678889999999984 599999999753 57777777777889
Q ss_pred eEEeecCCCCEEEEEeC--CCcEEEEEeeCCCCCcceec---cCCceeeeeeccC
Q 040533 314 LELSQSPDGLTVVSAAA--DETLRFWEAFGPSGSGDFVS---HLDGLLSLKVSPI 363 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~---~~~~v~~~~~sp~ 363 (364)
++++|++|+++||.+|. +..+++-.+.+......+.. .-+.|+||+|||.
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~ 493 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN 493 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC
Confidence 99999999999988874 67899999988877666653 3456899999994
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.7e-26 Score=184.63 Aligned_cols=282 Identities=17% Similarity=0.242 Sum_probs=223.4
Q ss_pred cceeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCC-EEEEEecCCcEEEEecCCcce
Q 040533 45 DYYSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 45 ~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~ 121 (364)
.-.++++.|+|.. +++++.|+.++||.+.......+..+.-...+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 3357889999964 7888899999999987665444444444577899999999998 888888888999999998765
Q ss_pred ee--eeecCC-CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040533 122 IR--NLEGHD-KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVH 198 (364)
Q Consensus 122 ~~--~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 198 (364)
.+ ...++. ..+.....+| ++++|+..+..|.|.+....+++. +..+ .-++.|..++|+.+++.|++++.+|.|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~el-i~s~-KieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKEL-ITSF-KIEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhh-hhee-eeccEEeeEEEecCCcEEEEEcCCceEE
Confidence 43 233333 3567778889 999999999999999999887764 4434 3467899999999999999999999999
Q ss_pred EEeCCCCCCCcceEEecccccce--eEEEEccCCCcEEEeecCCCCCeEEEEECCC------CeEEEEEe-cCCCeEEEE
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAV--KALAWCPYQFNVLASGGGTQDGCIKIWNVQK------GTCIHSVD-TKAQICGLE 269 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~------~~~~~~~~-~~~~v~~~~ 269 (364)
+||++.. .+++++.. .+.| ++++.++++ .++++|+ ..|.|.|||..+ .+++..+. ....|+++.
T Consensus 370 v~nl~~~---~~~~rf~D-~G~v~gts~~~S~ng-~ylA~GS--~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~ 442 (514)
T KOG2055|consen 370 VWNLRQN---SCLHRFVD-DGSVHGTSLCISLNG-SYLATGS--DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ 442 (514)
T ss_pred EEecCCc---ceEEEEee-cCccceeeeeecCCC-ceEEecc--CcceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence 9999875 45776654 3334 466777888 4788866 999999999754 34444443 346799999
Q ss_pred EcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc---ccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 270 WNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ---TSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
|+++.+.|+.++. ..++.+++-.+++......+... -+.|+|++|||.+.+||.|..+|.+.+|.+.
T Consensus 443 Fn~d~qiLAiaS~----~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 443 FNHDAQILAIASR----VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eCcchhhhhhhhh----ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999999998765 44889999999988877776543 3568999999999999999999999999875
No 128
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=174.07 Aligned_cols=277 Identities=18% Similarity=0.279 Sum_probs=203.2
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceee--eeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCc---
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQK--LLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETS--- 119 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~--- 119 (364)
+++++|+.+ .+++++.|+.|++|++..-.... .+...-.-+-.+.+.|+||.+-++... ...++++|.+...
T Consensus 89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG 168 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG 168 (420)
T ss_pred eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccC
Confidence 677888775 48888999999999987643211 111111223578899999988666554 4457999986432
Q ss_pred ceeee---------eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEE
Q 040533 120 KLIRN---------LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLAS 190 (364)
Q Consensus 120 ~~~~~---------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 190 (364)
..... -+.|.-.+..+-..- ++.+|++++.|..|.+|+++ ++ .+..+......-...+.||+|+++++
T Consensus 169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~n~~aavSP~GRFia~ 245 (420)
T KOG2096|consen 169 SGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQ-LLQSIDTNQSSNYDAAVSPDGRFIAV 245 (420)
T ss_pred CCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cc-eeeeeccccccccceeeCCCCcEEEE
Confidence 11111 122455566666655 88999999999999999998 44 46666555566677889999999999
Q ss_pred EeCCCeEEEEeCCCCC-----CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-------eEEEE
Q 040533 191 GGDDNLVHVWDHSKMS-----SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-------TCIHS 258 (364)
Q Consensus 191 ~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-------~~~~~ 258 (364)
++..-.|++|.+--.. ....+..+++|.+.|..++|+++...+ ++.+ .||++++||+.-. +.++.
T Consensus 246 ~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~-vtvS--kDG~wriwdtdVrY~~~qDpk~Lk~ 322 (420)
T KOG2096|consen 246 SGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRA-VTVS--KDGKWRIWDTDVRYEAGQDPKILKE 322 (420)
T ss_pred ecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCccee-EEEe--cCCcEEEeeccceEecCCCchHhhc
Confidence 9999999999864222 223466788999999999999998655 4544 8999999998531 11222
Q ss_pred E-----ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-ccccceeEEeecCCCCEEEEEeCCC
Q 040533 259 V-----DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-HQTSRILELSQSPDGLTVVSAAADE 332 (364)
Q Consensus 259 ~-----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg 332 (364)
. ...+....++.+|.|+.|++.. ...+.+|..++++...+++ .|...|.+|+|+++|+++++++ |.
T Consensus 323 g~~pl~aag~~p~RL~lsP~g~~lA~s~-------gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 323 GSAPLHAAGSEPVRLELSPSGDSLAVSF-------GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred CCcchhhcCCCceEEEeCCCCcEEEeec-------CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 1 1124455899999999999876 7889999999998887775 5889999999999999999987 56
Q ss_pred cEEEEE
Q 040533 333 TLRFWE 338 (364)
Q Consensus 333 ~i~vw~ 338 (364)
.++++.
T Consensus 395 ~vrv~~ 400 (420)
T KOG2096|consen 395 YVRVIR 400 (420)
T ss_pred eeeeec
Confidence 777775
No 129
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=2e-26 Score=195.97 Aligned_cols=256 Identities=20% Similarity=0.333 Sum_probs=211.2
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee--eeecCCCcEEE-EEeecCCCCEEEEeeCCCcEEEE
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR--NLEGHDKRVAT-ASWNHWNGHILTSGSQDKSIINH 157 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~~~ 157 (364)
..+.+|...|..++..+ +..+++++.||++++|+-..++.+. .+.+|.+-|.. +++.+.++..+++|+.|..+.+|
T Consensus 8 ~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred EEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 45669999999998775 4478999999999999976655443 46667777777 88876466779999999999999
Q ss_pred EcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEee
Q 040533 158 DVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 158 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
.+.+..+ ...+.+|+..|++++...++. +++|+.|.++++|-... ....+.+|+..|++++.-|++ .+++|
T Consensus 87 ~~~~~~P-~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-----l~~~l~gH~asVWAv~~l~e~--~~vTg 157 (745)
T KOG0301|consen 87 KLSQAEP-LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-----LVYSLQGHTASVWAVASLPEN--TYVTG 157 (745)
T ss_pred ecCCCCc-hhhhhccccceeeeecCCcCc-eEecccccceEEecchh-----hhcccCCcchheeeeeecCCC--cEEec
Confidence 9987765 788999999999999877776 99999999999998543 356689999999999999986 66776
Q ss_pred cCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEE
Q 040533 238 GGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILEL 316 (364)
Q Consensus 238 ~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i 316 (364)
+ .|.+|++|.- ++.++++..| ..|+.+++-+++.++-++ .||.|++|++ +++.+.++.+|.+.|+++
T Consensus 158 s--aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScs-------NDg~Ir~w~~-~ge~l~~~~ghtn~vYsi 225 (745)
T KOG0301|consen 158 S--ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCS-------NDGSIRLWDL-DGEVLLEMHGHTNFVYSI 225 (745)
T ss_pred c--CcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeec-------CCceEEEEec-cCceeeeeeccceEEEEE
Confidence 5 8999999975 7778888766 669999999887776554 4999999999 899999999999999999
Q ss_pred eecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeee
Q 040533 317 SQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKV 360 (364)
Q Consensus 317 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~ 360 (364)
....++..++++++|++++||+.. +..+.+....-.|+++.+
T Consensus 226 s~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 226 SMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV 267 (745)
T ss_pred EecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence 988888899999999999999977 444444444446666654
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=196.90 Aligned_cols=271 Identities=16% Similarity=0.241 Sum_probs=212.6
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCC-ceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENG-EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+.|.++ .+++++.|+.|++|+.... +...... .+...|.+++. ++.+|++|+.+++|.+|.+.+++.-..
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~i 91 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID--ISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTI 91 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh--ccCceeEEEee--cccceEEeeccceEEEeeCCCCCccce
Confidence 445566554 4778889999999997665 3222222 36777777775 456999999999999999998877666
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+....-++++++|+- +|++++.|+.|-.|++-++..... ...+.+|.++|.++.|+|++++||+.+-||.|++||+.+
T Consensus 92 L~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~-~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 92 LARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQ-EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred eeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccch-heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence 666778899999999 999999999999999999987765 677889999999999999999999999999999999987
Q ss_pred CCCCcceEEeccc-----ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCccc
Q 040533 205 MSSSKCLHRFRDH-----RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKE 276 (364)
Q Consensus 205 ~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~ 276 (364)
......+..+... ...+..++|+|++..+++.+ .|+.|.+|+..++.....+... ..+..++|+|.|+|
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 5443222222211 34567899999987888776 5999999999999888777532 44899999999999
Q ss_pred eeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
|+++.. +|.|.|||.++... ......|.+++|.|++.-+-.-...|...+|
T Consensus 247 iAAs~~------~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 247 IAASTL------DGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred Eeeecc------CCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 999865 99999999988322 2234679999999998766554444544444
No 131
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.9e-26 Score=177.86 Aligned_cols=262 Identities=19% Similarity=0.251 Sum_probs=197.2
Q ss_pred ceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee
Q 040533 90 PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI 169 (364)
Q Consensus 90 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 169 (364)
..|+.|++.|.+||+|+.||.|.|||+.+....+.+.+|..+|.+++|++ +|+.|++++.|..|.+||+..+.. ...+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~-l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSP-LKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCc-eeEE
Confidence 68999999999999999999999999999998899999999999999999 999999999999999999998874 4433
Q ss_pred ecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEec-c-cccceeEEEEccCCCcEEEeecCCCCCeEE
Q 040533 170 NAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFR-D-HRAAVKALAWCPYQFNVLASGGGTQDGCIK 246 (364)
Q Consensus 170 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 246 (364)
...++|....|+|.. +..++.-.+..-.+-++..+.. ..+..-. + .+..-.+..|.+.|+++++ |+..|.+.
T Consensus 104 -rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIit---GtsKGkll 178 (405)
T KOG1273|consen 104 -RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIIT---GTSKGKLL 178 (405)
T ss_pred -EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEE---ecCcceEE
Confidence 467899999999933 3333333333344555443211 1111000 0 0111223458888865555 34799999
Q ss_pred EEECCCCeEEEEEecC--CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC---------ceeeeccc--cccce
Q 040533 247 IWNVQKGTCIHSVDTK--AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM---------TKWGELQH--QTSRI 313 (364)
Q Consensus 247 i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~---------~~~~~~~~--~~~~i 313 (364)
++|..+.+++..+... ..|..+.++..|+.++.... |..|+.|++..- ++..+++. ..-.-
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts------DRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS------DRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEEecC------CceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 9999999999887654 57999999999999998755 999999998631 11122221 12234
Q ss_pred eEEeecCCCCEEEEEeC-CCcEEEEEeeCCCCCcceeccC-CceeeeeeccCC
Q 040533 314 LELSQSPDGLTVVSAAA-DETLRFWEAFGPSGSGDFVSHL-DGLLSLKVSPIR 364 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~-~~v~~~~~sp~~ 364 (364)
.+++|+.+|.|++.++. -..++||.-..+..++.+.|.. ....++.|+|.|
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~r 305 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVR 305 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccce
Confidence 57899999999988874 4569999999999999998766 568899999976
No 132
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=3.9e-28 Score=207.23 Aligned_cols=247 Identities=21% Similarity=0.442 Sum_probs=217.0
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCC
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGH 143 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (364)
.-.+++||.+. ...|...+.++..-..++.+++|+.|..+.+|.+.....+..+.+|..+|.++.|++ ...
T Consensus 13 ~t~Lr~~~~~~--------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~ 83 (825)
T KOG0267|consen 13 ATKLRVWDTRE--------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SER 83 (825)
T ss_pred eeccccccchh--------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chh
Confidence 44566777532 236788899998877889999999999999999988777778999999999999999 999
Q ss_pred EEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeE
Q 040533 144 ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKA 223 (364)
Q Consensus 144 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 223 (364)
+|++|+.+|+|++||++... .+..+.+|...+.++.|+|-+.+.+.|+.|+.+.+||.+.. .+.+.+.+|...+..
T Consensus 84 LlaagsasgtiK~wDleeAk-~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~---Gc~~~~~s~~~vv~~ 159 (825)
T KOG0267|consen 84 LLAAGSASGTIKVWDLEEAK-IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK---GCSHTYKSHTRVVDV 159 (825)
T ss_pred hhcccccCCceeeeehhhhh-hhhhhhccccCcceeeeccceEEeccccccccceehhhhcc---CceeeecCCcceeEE
Confidence 99999999999999999666 46788899999999999999999999999999999998864 458888999999999
Q ss_pred EEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 224 LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 224 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
+.|+|+| .+++.++ .|..+++||+..|+....|. +...+..+.|+|..-+++.|.. |+.+++||+++.+.
T Consensus 160 l~lsP~G-r~v~~g~--ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~------d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 160 LRLSPDG-RWVASGG--EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS------DRTVRFWDLETFEV 230 (825)
T ss_pred EeecCCC-ceeeccC--CcceeeeecccccccccccccccccccccccCchhhhhccCCC------CceeeeeccceeEE
Confidence 9999999 5677765 79999999999999999998 5588999999999888888754 99999999999999
Q ss_pred eeeccccccceeEEeecCCCCEEEEEeCCC
Q 040533 303 WGELQHQTSRILELSQSPDGLTVVSAAADE 332 (364)
Q Consensus 303 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 332 (364)
+.........|.+.+|+|++..+++|..+.
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccCCccCCceeeeecCCceeeecCchhh
Confidence 988888888999999999999998886553
No 133
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=186.99 Aligned_cols=272 Identities=17% Similarity=0.214 Sum_probs=211.0
Q ss_pred ecCCCCCceEEEEcCCC--CEEEEEecCCcEEEEecCCc----ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEE
Q 040533 83 VTGEDDFPTSISWSQDA--KTLAVGYMASKLQLWDAETS----KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIIN 156 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 156 (364)
..-+..+|++++|+|.. +++|+|...|.|-+||+.+. ..+..+..|..+|.++.|+|.+...+++.+.||+|++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 33578899999999955 58899999999999999522 3345677899999999999988899999999999999
Q ss_pred EEcccCcc-eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 157 HDVRVSNN-VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 157 ~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
-|++.... .+.........+..+.|+.+...++.+..=|...+||++.... ....+.-|...|.+++++|..+++++
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s--~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS--EYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc--cchhhhhhhcccceeecCCCCchhee
Confidence 99986542 1122222445677888988888888888888999999998654 24445567889999999999999999
Q ss_pred eecCCCCCeEEEEECCCCe-----EEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC----CCCceeeec
Q 040533 236 SGGGTQDGCIKIWNVQKGT-----CIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY----PHMTKWGEL 306 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~----~~~~~~~~~ 306 (364)
+++ .|++.+|||++.-. .+..+.+...|.+..|||.+..|++... |+.|+|||. ....+..++
T Consensus 340 T~s--~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~------D~~IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 340 TAS--LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ------DNEIRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred ecc--cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc------CCceEEeecccccccCCcccee
Confidence 987 99999999998632 2556677888999999999888887754 999999998 334444444
Q ss_pred cccc---c--ceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCC-ceeee-eeccCC
Q 040533 307 QHQT---S--RILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLD-GLLSL-KVSPIR 364 (364)
Q Consensus 307 ~~~~---~--~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~v~~~-~~sp~~ 364 (364)
.... . ......|.|+..++++|-.-..|-|+|-..++.+..+..... .|.++ +|+|.|
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~ 476 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR 476 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence 3211 1 234678999999999999988999999888876666554333 45544 677764
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=4.6e-26 Score=175.26 Aligned_cols=281 Identities=17% Similarity=0.280 Sum_probs=214.0
Q ss_pred eecccCCC--c-cEEEEEeCCeEEEEECCCCce-------------eeeeeecCCCCCceEEEEcC-CCCEEEEEecCCc
Q 040533 48 SNMMDWGR--N-NILAIALGLELYLWKQENGEV-------------QKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASK 110 (364)
Q Consensus 48 ~~~~~~~~--~-~~~~~~~~~~i~iw~~~~~~~-------------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~ 110 (364)
+++++..+ . .++.++.||.|.+||++.... +....-.+|.-.|.++.|-| |.-++.+++-|.+
T Consensus 46 vNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDht 125 (397)
T KOG4283|consen 46 VNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHT 125 (397)
T ss_pred cceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccce
Confidence 56666655 2 378899999999999875431 01112237888999999999 5668889999999
Q ss_pred EEEEecCCcceeeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-E
Q 040533 111 LQLWDAETSKLIRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-L 187 (364)
Q Consensus 111 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 187 (364)
++|||..+-+....|+ ..+.|.+-+++|-. ..++|+|..+-.|++.|+.++.. ...+.+|.+.|.++.|+|... .
T Consensus 126 lKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~Wsp~~e~v 203 (397)
T KOG4283|consen 126 LKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVEWSPSSEWV 203 (397)
T ss_pred EEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEEeccCceeE
Confidence 9999999988887777 56788888888843 34788888999999999998874 788999999999999999665 6
Q ss_pred EEEEeCCCeEEEEeCCCCC------------CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 188 LASGGDDNLVHVWDHSKMS------------SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 188 l~~~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
|++|+.||.|++||++... ....++.-..|.+.|..++|..++.+++.++ .|..+++|+..+|+.
T Consensus 204 LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g---td~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 204 LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG---TDDRIRVWNMESGRN 280 (397)
T ss_pred EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc---CccceEEeecccCcc
Confidence 8899999999999998641 1122222346888999999999997777765 599999999998764
Q ss_pred EEEEe---cCCCeEEEEE---cCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEe
Q 040533 256 IHSVD---TKAQICGLEW---NRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 256 ~~~~~---~~~~v~~~~~---~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 329 (364)
...-. .+..-..+++ +-+.. ++++. -.++.+.++.+-++..+..+..|...|.+.++-|+=+.+.+|.
T Consensus 281 tl~~~g~~~~n~~~~~~~~~~~~~s~-vfv~~-----p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~ 354 (397)
T KOG4283|consen 281 TLREFGPIIHNQTTSFAVHIQSMDSD-VFVLF-----PNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGD 354 (397)
T ss_pred cccccccccccccccceEEEeecccc-eEEEE-----ecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccc
Confidence 32210 0111111111 11111 11221 1279999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEe
Q 040533 330 ADETLRFWEA 339 (364)
Q Consensus 330 ~dg~i~vw~~ 339 (364)
.|+.|..|-.
T Consensus 355 ~d~ni~~w~p 364 (397)
T KOG4283|consen 355 MNGNIYMWSP 364 (397)
T ss_pred cCCccccccc
Confidence 9999999987
No 135
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.9e-25 Score=171.73 Aligned_cols=251 Identities=15% Similarity=0.310 Sum_probs=189.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc----ceeeeeecCCCcEEEEEe-ecCCCCEEEEeeCCCcEEEEEc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS----KLIRNLEGHDKRVATASW-NHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
+|.+-|.++.|.+.|+.+|+|+.|++|+|||..+. .+....+.|.+.|..+.| +|.-|+.+|+++.|+++.||.-
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 88999999999999999999999999999996543 445567889999999999 4556899999999999999975
Q ss_pred ccCc--------ceeeeeecccCcEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCCC---CcceEEec-------cccc
Q 040533 160 RVSN--------NVTSRINAHTAEVCGLKWSN--EGNLLASGGDDNLVHVWDHSKMSS---SKCLHRFR-------DHRA 219 (364)
Q Consensus 160 ~~~~--------~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~-------~~~~ 219 (364)
.... .....+......|+.+.|.| -|-.||+++.||.++||+...... ......+. .+..
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~ 170 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ 170 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence 2111 12345566778999999999 567899999999999998765322 11122222 3556
Q ss_pred ceeEEEEccCC--CcEEEeecCCCC-----CeEEEEECCCCe----EEEEE-ecCCCeEEEEEcCCc----cceeeeccC
Q 040533 220 AVKALAWCPYQ--FNVLASGGGTQD-----GCIKIWNVQKGT----CIHSV-DTKAQICGLEWNRHH----KEILSGHGF 283 (364)
Q Consensus 220 ~v~~~~~~~~~--~~~~~~~~g~~d-----~~i~i~d~~~~~----~~~~~-~~~~~v~~~~~~~~~----~~l~~~~~~ 283 (364)
+..|+.|+|.. +.+++.|+ .+ +.+.||....+. .+.++ .+..+|+.++|.|.- ..++++.
T Consensus 171 ~~~CvsWn~sr~~~p~iAvgs--~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~-- 246 (361)
T KOG2445|consen 171 PCFCVSWNPSRMHEPLIAVGS--DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT-- 246 (361)
T ss_pred cceEEeeccccccCceEEEEc--ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee--
Confidence 77899998753 35677765 22 478888875532 22233 345889999999963 3455553
Q ss_pred CccCCCCeEEEeeCCCC--------------------ceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 284 SSSGDGQKLCLWKYPHM--------------------TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~--------------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
.|| |+||.+... +.+.++..|.++|..+.|+-.|..|++.|.||.|++|...-..
T Consensus 247 ----kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 247 ----KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred ----cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence 488 999998631 2345577899999999999999999999999999999865443
Q ss_pred C
Q 040533 344 G 344 (364)
Q Consensus 344 ~ 344 (364)
.
T Consensus 322 ~ 322 (361)
T KOG2445|consen 322 L 322 (361)
T ss_pred h
Confidence 3
No 136
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=6.9e-27 Score=192.03 Aligned_cols=262 Identities=16% Similarity=0.255 Sum_probs=213.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc---ceeeeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS---KLIRNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
.|..-|.++++|...+.+.+|+ .|.|+|||+... ..+..+. .....|+++...| +++.|++|++-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-dgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-DGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecC-CCceEEeccccceeeeeec
Confidence 6888899999999999999997 578999998643 2222222 2456789999999 9999999999999999999
Q ss_pred ccCcceee-eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec
Q 040533 160 RVSNNVTS-RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 160 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
......+. .+....-...+++.+||.+..+++..||.|.|||+.+. ..++.+++|.+.+.||..+++|. -+-+|+
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq---~~VrqfqGhtDGascIdis~dGt-klWTGG 570 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDISKDGT-KLWTGG 570 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc---eeeecccCCCCCceeEEecCCCc-eeecCC
Confidence 87653222 22222345677899999999999999999999999875 44899999999999999999994 556665
Q ss_pred CCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEee
Q 040533 239 GTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQ 318 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 318 (364)
.|++|+.||++.++.+...+..++|.++..+|.+..+++|-. ++.+.+..... .....+.-|++.|.++.|
T Consensus 571 --lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMe------ns~vevlh~sk-p~kyqlhlheScVLSlKF 641 (705)
T KOG0639|consen 571 --LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGME------NSNVEVLHTSK-PEKYQLHLHESCVLSLKF 641 (705)
T ss_pred --CccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecc------cCcEEEEecCC-ccceeecccccEEEEEEe
Confidence 899999999999999998888899999999999999999864 77777776543 334456678999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 319 SPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 319 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
.+.|+++++.+.|+.+..|...-+..+...+ ..++|.++.+|-
T Consensus 642 a~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ 684 (705)
T KOG0639|consen 642 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISF 684 (705)
T ss_pred cccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeecc
Confidence 9999999999999999999988777655443 356677766653
No 137
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.9e-25 Score=190.14 Aligned_cols=314 Identities=19% Similarity=0.306 Sum_probs=242.0
Q ss_pred CCCcceeecccCCCcc--EEEEEeCCeEEEEECCCC--ceeeeee---ecCCCCCceEEEEcCCCCEEEEEecCCcEEEE
Q 040533 42 LRNDYYSNMMDWGRNN--ILAIALGLELYLWKQENG--EVQKLLK---VTGEDDFPTSISWSQDAKTLAVGYMASKLQLW 114 (364)
Q Consensus 42 ~~~~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~--~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 114 (364)
+-.+-.+.++.|+|.. +|+++.|.++.+|...+. -...... ..+.........|+|+++.+++-+..|-.++|
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlW 343 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLW 343 (764)
T ss_pred cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEE
Confidence 3455578999999964 899999999999987654 3333333 33444567899999999999999999999999
Q ss_pred ecCCc---ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc---ceeeeeecccCcEEEEEEcCCCCEE
Q 040533 115 DAETS---KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN---NVTSRINAHTAEVCGLKWSNEGNLL 188 (364)
Q Consensus 115 ~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l 188 (364)
..+.. .....+.+|...|..++|+| .|++|++.+.|.+-+++-.-..+ ..+...+-|...++|++|-+....+
T Consensus 344 kt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F 422 (764)
T KOG1063|consen 344 KTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF 422 (764)
T ss_pred eccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence 84332 23345678999999999999 99999999999999998754222 1233455688889999998866688
Q ss_pred EEEeCCCeEEEEeCCCC-------------------------------------------C-------------------
Q 040533 189 ASGGDDNLVHVWDHSKM-------------------------------------------S------------------- 206 (364)
Q Consensus 189 ~~~~~d~~i~iwd~~~~-------------------------------------------~------------------- 206 (364)
++|.+...+++|+.... .
T Consensus 423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e 502 (764)
T KOG1063|consen 423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE 502 (764)
T ss_pred eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence 89999999999985430 0
Q ss_pred -----------CCcceEEecccccceeEEEEccCCCcEEEeecCC---CCCeEEEEECCCCeEEEEEecC-CCeEEEEEc
Q 040533 207 -----------SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT---QDGCIKIWNVQKGTCIHSVDTK-AQICGLEWN 271 (364)
Q Consensus 207 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~---~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~ 271 (364)
....++++.+|...|.+++.+|++ ++++++..+ ....|++|+..+......+..+ -.|+.++||
T Consensus 503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS 581 (764)
T KOG1063|consen 503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS 581 (764)
T ss_pred CChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence 001123345688899999999998 677776522 2345999999998888777655 569999999
Q ss_pred CCccceeeeccCCccCCCCeEEEeeCCCCce----eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC--CCC
Q 040533 272 RHHKEILSGHGFSSSGDGQKLCLWKYPHMTK----WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP--SGS 345 (364)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~--~~~ 345 (364)
|+|++|++.+. |..+.+|....... ....+.|..-|.+..|+|++.+++|+|.|.+|+||..... +.+
T Consensus 582 pdg~~LLsvsR------DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i 655 (764)
T KOG1063|consen 582 PDGRYLLSVSR------DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYI 655 (764)
T ss_pred CCCcEEEEeec------CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhh
Confidence 99999999855 99999998754321 2336789999999999999999999999999999999887 333
Q ss_pred cc--eeccCCceeeeeeccC
Q 040533 346 GD--FVSHLDGLLSLKVSPI 363 (364)
Q Consensus 346 ~~--~~~~~~~v~~~~~sp~ 363 (364)
.. ...+..+|+.++|.|.
T Consensus 656 ~~~a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 656 SRFACLKFSLAVTAVAYLPV 675 (764)
T ss_pred hhhchhccCCceeeEEeecc
Confidence 33 2357889999999874
No 138
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.95 E-value=5.2e-26 Score=186.61 Aligned_cols=262 Identities=18% Similarity=0.296 Sum_probs=211.2
Q ss_pred eecccCCCcc-EEEEE--eCCeEEEEECCC--CceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee
Q 040533 48 SNMMDWGRNN-ILAIA--LGLELYLWKQEN--GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~--~~~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
+..+.|+..+ +++++ .|..+++|.-.. +++..+....+ +.-.|++......++++|+..+.|+|||++...+.
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 6778998876 44433 466888886432 23333333323 24556666666689999999999999999988888
Q ss_pred eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-EEEEEeCCCeEEEEe
Q 040533 123 RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-LLASGGDDNLVHVWD 201 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd 201 (364)
+.+++|...|+++.++- ++.+||+++..|.|.+..+.++......-.+....|.-+.|+|..+ +|.+++.+|.|.+||
T Consensus 115 r~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 88999999999999998 8999999999999999999887753322223345667899999655 677889999999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeec
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
+.... ....-...|..+...++|+|..+.++++.| .|..|.+||.+..+....+....+...++|+++|.+|++|.
T Consensus 194 v~g~s--p~~~~~~~HsAP~~gicfspsne~l~vsVG--~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 194 VQGMS--PIFHASEAHSAPCRGICFSPSNEALLVSVG--YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred ccCCC--cccchhhhccCCcCcceecCCccceEEEec--ccceEEEeecccccccceeeecCCcceeeecCCceEEEeec
Confidence 87543 223444578999999999999999999988 99999999999988888888899999999999999999996
Q ss_pred cCCccCCCCeEEEeeCCC-CceeeeccccccceeEEeecCCC
Q 040533 282 GFSSSGDGQKLCLWKYPH-MTKWGELQHQTSRILELSQSPDG 322 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~ 322 (364)
. .|.|..||++. ..++..+..|...|++++|-|..
T Consensus 270 s------~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 270 S------KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred C------CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 6 99999999985 56778888999999999998764
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-25 Score=179.80 Aligned_cols=269 Identities=25% Similarity=0.405 Sum_probs=199.6
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcC-------CCCEEEEEecCCcEEEEecCCcce-----------------
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-------DAKTLAVGYMASKLQLWDAETSKL----------------- 121 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~iw~~~~~~~----------------- 121 (364)
.++||+-....+..-..+ --.....|++|.. .|+++|.|+.|..|.|||+.-...
T Consensus 153 EvYVyn~~e~nlYvHHD~-ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k 231 (463)
T KOG0270|consen 153 EVYVYNEEEENLYVHHDF-ILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKK 231 (463)
T ss_pred EEEEEcCCCcceeEecce-eccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhh
Confidence 567776554332111000 1134456777753 367999999999999999852110
Q ss_pred ----eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCe
Q 040533 122 ----IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNL 196 (364)
Q Consensus 122 ----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 196 (364)
-....+|+..|..++|+....+.||+|+.|.+|++||+.++++ ...+..|...|.++.|+| ....|++|+.|++
T Consensus 232 ~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~ 310 (463)
T KOG0270|consen 232 KGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT 310 (463)
T ss_pred hcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccce
Confidence 0112358888999999887788999999999999999998886 677778999999999999 5679999999999
Q ss_pred EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eEEEEEec-CCCeEEEEEcCCc
Q 040533 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDT-KAQICGLEWNRHH 274 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~-~~~v~~~~~~~~~ 274 (364)
|.+.|.|.......... ..+.|-.++|.|.....+.++. .||+|+-+|+|+. +++.++.. ..+|.++++++..
T Consensus 311 V~l~D~R~~~~s~~~wk---~~g~VEkv~w~~~se~~f~~~t--ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~ 385 (463)
T KOG0270|consen 311 VALKDCRDPSNSGKEWK---FDGEVEKVAWDPHSENSFFVST--DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQT 385 (463)
T ss_pred EEeeeccCccccCceEE---eccceEEEEecCCCceeEEEec--CCceEEeeecCCCCCceeEEEeccCCcceEEecCCC
Confidence 99999996433222222 3577999999999988888876 9999999999985 88888764 5789999999988
Q ss_pred cceeeeccCCccCCCCeEEEeeCCCCceeee--ccccccceeEEeecCCCC-EEEEEeCCCcEEEEEeeCCCCCc
Q 040533 275 KEILSGHGFSSSGDGQKLCLWKYPHMTKWGE--LQHQTSRILELSQSPDGL-TVVSAAADETLRFWEAFGPSGSG 346 (364)
Q Consensus 275 ~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~ 346 (364)
+.+++. ++.++.|++|++..-.+... -.-.-+...|.++.|+-. +++.|+..+.++|||+.+...+.
T Consensus 386 p~~l~t-----~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 386 PGLLST-----ASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred Ccceee-----ccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 776654 25699999999865443221 111123466778888665 56778888889999998876543
No 140
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=3.3e-25 Score=188.67 Aligned_cols=298 Identities=18% Similarity=0.265 Sum_probs=227.7
Q ss_pred EEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCC---EEEEEecCCcEEEEecCCcc-----------------
Q 040533 61 IALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAK---TLAVGYMASKLQLWDAETSK----------------- 120 (364)
Q Consensus 61 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~iw~~~~~~----------------- 120 (364)
++.+..|.++.-...+......+.||.+.|.+++|...+. +||+++.|..|+||.+.-+.
T Consensus 165 Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~ 244 (764)
T KOG1063|consen 165 GGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNL 244 (764)
T ss_pred cCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCC
Confidence 3455678888877778888899999999999999987544 88999999999999874221
Q ss_pred ----ee----------eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee------eeeecccCcEEEEE
Q 040533 121 ----LI----------RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT------SRINAHTAEVCGLK 180 (364)
Q Consensus 121 ----~~----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~------~~~~~~~~~v~~~~ 180 (364)
.. ..+.+|..-|+++.|+| .+..|++++.|.++.+|.......+. -...+.........
T Consensus 245 ~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~l 323 (764)
T KOG1063|consen 245 PVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGL 323 (764)
T ss_pred ceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEE
Confidence 01 11247999999999999 88899999999999999877553211 11223344578889
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC--------
Q 040533 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-------- 252 (364)
Q Consensus 181 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-------- 252 (364)
|+|+++.+++-+..|-.++|.............+.+|.+.|..++|+|.|.+++.++ .|.+-|+|-.-.
T Consensus 324 w~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs---~DQTTRlFa~wg~q~~wHEi 400 (764)
T KOG1063|consen 324 WSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVS---LDQTTRLFARWGRQQEWHEI 400 (764)
T ss_pred EcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEec---cccceeeecccccccceeee
Confidence 999999999999999999998444333344555678999999999999998776655 576666653210
Q ss_pred ---------------------------CeEEEEE----------------------------------------------
Q 040533 253 ---------------------------GTCIHSV---------------------------------------------- 259 (364)
Q Consensus 253 ---------------------------~~~~~~~---------------------------------------------- 259 (364)
.+.++.+
T Consensus 401 aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~ 480 (764)
T KOG1063|consen 401 ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETN 480 (764)
T ss_pred cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccc
Confidence 0000000
Q ss_pred ------------------------------------------ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 260 ------------------------------------------DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 260 ------------------------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
.+...|.+++.+|++++++++.. +..-+...|++|+.
T Consensus 481 ~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCK-S~~~ehAvI~lw~t 559 (764)
T KOG1063|consen 481 TGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACK-SSLKEHAVIRLWNT 559 (764)
T ss_pred cccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhh-hCCccceEEEEEec
Confidence 01125889999999999998753 22233567999999
Q ss_pred CCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC----CcceeccCCceeeeeeccC
Q 040533 298 PHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG----SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~v~~~~~sp~ 363 (364)
.+......+.+|.-.|+.++|||||++|++.|.|.++.+|....... ....+.|..-|++..|+|.
T Consensus 560 ~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd 629 (764)
T KOG1063|consen 560 ANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD 629 (764)
T ss_pred cchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc
Confidence 99999999999999999999999999999999999999999865433 2335689999999999996
No 141
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=9.8e-25 Score=179.45 Aligned_cols=294 Identities=16% Similarity=0.234 Sum_probs=223.6
Q ss_pred ceeecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce---
Q 040533 46 YYSNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL--- 121 (364)
Q Consensus 46 ~~~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~--- 121 (364)
-++.++.|.++ .++++.++|.|.||+..+.+..+... .|.+.|.+++.-.+|.+|- |+.|..|..||-. -+.
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~ 322 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH--AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRE 322 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee--ecCCceEEEEEecCccEee-cCccceEEecccc-cccccc
Confidence 47889999986 58899999999999997776654443 8999999999999997555 9999999999832 110
Q ss_pred --------------------------------------eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 122 --------------------------------------IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 122 --------------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
.....+|......++.+| +.+.+++++.|+.+++|+ ..+
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k 399 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHK 399 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCc
Confidence 011245777888899999 999999999999999999 222
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
..--.....++.|+.|+|.| .+|.|...|...+.|.++.. +.++...+.++.+++|+|+| .+++.|+ .|+
T Consensus 400 --~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~----lv~~~~d~~~ls~v~ysp~G-~~lAvgs--~d~ 469 (626)
T KOG2106|consen 400 --LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD----LVTIHTDNEQLSVVRYSPDG-AFLAVGS--HDN 469 (626)
T ss_pred --eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccce----eEEEEecCCceEEEEEcCCC-CEEEEec--CCC
Confidence 22223456788999999999 99999999999999987632 33333348899999999999 5666655 999
Q ss_pred eEEEEECCCCeEE-EEEe--cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-------------
Q 040533 244 CIKIWNVQKGTCI-HSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ------------- 307 (364)
Q Consensus 244 ~i~i~d~~~~~~~-~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~------------- 307 (364)
.|++|.+...... .... ..++|+.+.|++|++++.+.+. |-.|..|....-+.+...+
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~------d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF 543 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSG------DYEILYWKPSECKQITSVKDVKWATYTCTLGF 543 (626)
T ss_pred eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccC------ceEEEEEccccCcccceecceeeeeeEEEEEE
Confidence 9999998754332 2221 2388999999999999998755 8899999543322222111
Q ss_pred -----ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC---CCcceeccCCceeeeeecc
Q 040533 308 -----HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS---GSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 308 -----~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~---~~~~~~~~~~~v~~~~~sp 362 (364)
.+...|..++-+.+.+++|+|...|.|++|...-.+ ....+.+|.+-|++++|.-
T Consensus 544 ~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~ 606 (626)
T KOG2106|consen 544 EVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLC 606 (626)
T ss_pred EEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEee
Confidence 233456666677788899999999999999875433 3456678999999999973
No 142
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=181.94 Aligned_cols=238 Identities=21% Similarity=0.354 Sum_probs=188.2
Q ss_pred cEEEEE-eCCeEEEEECCCCc-eeeeee------------------ecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEe
Q 040533 57 NILAIA-LGLELYLWKQENGE-VQKLLK------------------VTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWD 115 (364)
Q Consensus 57 ~~~~~~-~~~~i~iw~~~~~~-~~~~~~------------------~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~ 115 (364)
+++|++ .+..|.|||+.-.. ..+.+. ..+|++.|.+++|+.. .+.||+|+.|.+|.+||
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 466654 68899999975221 111111 2379999999999875 46899999999999999
Q ss_pred cCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCC-CCEEEEEeCC
Q 040533 116 AETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE-GNLLASGGDD 194 (364)
Q Consensus 116 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d 194 (364)
+.++++..++..|.+.|.++.|+|....+|++|+.|++|.+.|.+.....-..+ ...+.|-.++|.|. ...++++..|
T Consensus 273 ~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 273 VDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred cCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEecCC
Confidence 999999999999999999999999899999999999999999998544322223 34578999999994 4578888899
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEc
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWN 271 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~ 271 (364)
|+|+-+|+|+.. +++.+++.|.++|.++++++.-+.++++++ .|+.|++|++..........+. +...++++.
T Consensus 352 G~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s--~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 352 GTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTAS--TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD 427 (463)
T ss_pred ceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeecc--ccceEEEEeecCCCCcccccccccccceeecccC
Confidence 999999999864 789999999999999999999999999987 8999999999765443222221 346778888
Q ss_pred CCccceeeeccCCccCCCCeEEEeeCCCCceee
Q 040533 272 RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG 304 (364)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~ 304 (364)
|+-.++++.+ +..+.+++||+.+...+.
T Consensus 428 ~~~a~~la~G-----G~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 428 PDVAFTLAFG-----GEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred CCcceEEEec-----CccceEEEeecccChhHH
Confidence 8876665543 446789999998765543
No 143
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.8e-27 Score=203.26 Aligned_cols=244 Identities=21% Similarity=0.396 Sum_probs=208.8
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEE
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGL 179 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~ 179 (364)
.+++.+..+-.+++|+.+. +..|...|.++..-. ..+.+++|+.|..+-+|.+..... ...+.+|..+|.++
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~-i~S~~~hespIeSl 76 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNA-ITSLTGHESPIESL 76 (825)
T ss_pred cccceeeeeeccccccchh------hhhhhhhhceeeeec-cceeeccCCCceeeccccccCCch-hheeeccCCcceee
Confidence 3444555556677887542 345777788887755 889999999999999999876654 44588999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEE
Q 040533 180 KWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV 259 (364)
Q Consensus 180 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 259 (364)
.|+++..+|++|+.+|+|++||+... +.++++.+|...+.++.|+|.+. +.+.+ +.|..+.+||.+...+...+
T Consensus 77 ~f~~~E~LlaagsasgtiK~wDleeA---k~vrtLtgh~~~~~sv~f~P~~~-~~a~g--Stdtd~~iwD~Rk~Gc~~~~ 150 (825)
T KOG0267|consen 77 TFDTSERLLAAGSASGTIKVWDLEEA---KIVRTLTGHLLNITSVDFHPYGE-FFASG--STDTDLKIWDIRKKGCSHTY 150 (825)
T ss_pred ecCcchhhhcccccCCceeeeehhhh---hhhhhhhccccCcceeeeccceE-Eeccc--cccccceehhhhccCceeee
Confidence 99999999999999999999998764 45889999999999999999984 44554 49999999999988888888
Q ss_pred ecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 260 DTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 260 ~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
..+ ..+..+.|+|+|++++.+. +|..++|||...|+.+.+|..|.+.+..+.|+|..-++++|+.|++|++||
T Consensus 151 ~s~~~vv~~l~lsP~Gr~v~~g~------ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~d 224 (825)
T KOG0267|consen 151 KSHTRVVDVLRLSPDGRWVASGG------EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWD 224 (825)
T ss_pred cCCcceeEEEeecCCCceeeccC------CcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeec
Confidence 765 4478889999999999884 489999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCcceeccCCceeeeeeccC
Q 040533 339 AFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+++.+.+........+|.+++|+|.
T Consensus 225 letfe~I~s~~~~~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 225 LETFEVISSGKPETDGVRSLAFNPD 249 (825)
T ss_pred cceeEEeeccCCccCCceeeeecCC
Confidence 9988887777777889999999985
No 144
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2e-25 Score=181.70 Aligned_cols=251 Identities=20% Similarity=0.249 Sum_probs=201.4
Q ss_pred cEEEEEe-CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEE
Q 040533 57 NILAIAL-GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATA 135 (364)
Q Consensus 57 ~~~~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 135 (364)
.++++.. ...|.+|.+....... ...--.+.|.+++-+|+|.+|+.|+..|.|++|.+.+|.++..+.+|-..|+++
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~--q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL 129 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVV--QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCL 129 (476)
T ss_pred heeeecccCccccccccCchhhhh--hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEE
Confidence 3444443 4588999987654333 112336789999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEccc--------CcceeeeeecccCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCC
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRV--------SNNVTSRINAHTAEVCGLKWSNE--GNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~--------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.|+- |+.+|++|+.||.|.+|.+.. ...+...+..|.-+|+++...+. ..++++++.|.++++||+..+
T Consensus 130 ~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 130 KFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred EEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 9999 999999999999999998742 12346678899999999988764 358999999999999998875
Q ss_pred CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe----------------EEEEEecC---CCeE
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT----------------CIHSVDTK---AQIC 266 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----------------~~~~~~~~---~~v~ 266 (364)
. .+.++. .+..+.+++.+|.+.. +.+| +.+|.|.+.++.+.. .+..+.++ .+|+
T Consensus 209 ~---LLlti~-fp~si~av~lDpae~~-~yiG--t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 209 V---LLLTIT-FPSSIKAVALDPAERV-VYIG--TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT 281 (476)
T ss_pred e---eeEEEe-cCCcceeEEEcccccE-EEec--CCcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence 3 344443 4678999999998854 4454 489999998875422 22223222 4799
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL 323 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~ 323 (364)
+++++-||..|++|.. ||.++|||+.+.++++++....++|+.+.+.|-.+
T Consensus 282 cLais~DgtlLlSGd~------dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 282 CLAISTDGTLLLSGDE------DGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred EEEEecCccEEEeeCC------CCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 9999999999999955 99999999999999999987788999999976543
No 145
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=169.26 Aligned_cols=268 Identities=15% Similarity=0.186 Sum_probs=196.3
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee--eeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEE
Q 040533 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI--RNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINH 157 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 157 (364)
.+++|.+.|++++|+.||++||+++.|+.|+||+++.-... +.++ -.-+..+.+.|.|+-..+++++-...++++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 46699999999999999999999999999999999764221 1111 0112457889999555666666677789999
Q ss_pred EcccCcc-----------eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEE
Q 040533 158 DVRVSNN-----------VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAW 226 (364)
Q Consensus 158 d~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 226 (364)
.+..... -...-..|.-.+..+-...++.+|++++.|..|.+|+++ + +.+..+......-+..+.
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G---q~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G---QLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C---ceeeeeccccccccceee
Confidence 8753321 011223456677777777788999999999999999987 3 447777666677788899
Q ss_pred ccCCCcEEEeecCCCCCeEEEEECC---CCe-----EEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 227 CPYQFNVLASGGGTQDGCIKIWNVQ---KGT-----CIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 227 ~~~~~~~~~~~~g~~d~~i~i~d~~---~~~-----~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
+|+|++++++| ..--|++|..- .|. .+..+.+ .+.|..++|+++...+++.+ .||.+++||.
T Consensus 237 SP~GRFia~~g---FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS------kDG~wriwdt 307 (420)
T KOG2096|consen 237 SPDGRFIAVSG---FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS------KDGKWRIWDT 307 (420)
T ss_pred CCCCcEEEEec---CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe------cCCcEEEeec
Confidence 99997666665 46779999863 222 2233443 46799999999999999874 4999999997
Q ss_pred CC-------Cceeeec----cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee-ccCCceeeeeeccC
Q 040533 298 PH-------MTKWGEL----QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV-SHLDGLLSLKVSPI 363 (364)
Q Consensus 298 ~~-------~~~~~~~----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~sp~ 363 (364)
+- .+.+++. ....+....+..+|.|+.||.+. ...++++..+.++....+. .|...|.+++|+|.
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSD 384 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence 42 2222222 11223345899999999888764 4579999999988887776 68999999999984
No 146
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.4e-24 Score=183.08 Aligned_cols=279 Identities=17% Similarity=0.285 Sum_probs=216.4
Q ss_pred eecccCCCc-cEEEEE-eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRN-NILAIA-LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~-~~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+.+++++.+ +.+|++ .+|.|-+|++..+-.....-..+....|.+++|++ +..|.+.+.+|.|.-||+.+++....+
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~ 106 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNI 106 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEe
Confidence 677777763 445554 78999999998865443332224567899999995 556777778999999999999999999
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce-eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV-TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
....+.|++++.+| .+..++.|+.||.+..++...+.-. ...+...+++|.+++|+|++..++.|+.||.|++||...
T Consensus 107 d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 107 DSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred cCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence 99999999999999 8999999999997777776655422 223334568999999999999999999999999999887
Q ss_pred CCCCcceEE-----ecc-cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccce
Q 040533 205 MSSSKCLHR-----FRD-HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEI 277 (364)
Q Consensus 205 ~~~~~~~~~-----~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l 277 (364)
+.... +.+ +.. ...-|+++.|-.++ .+++|. ..|+|.+||...+..++.+.. ...|.+++..+++..+
T Consensus 186 ~~t~~-~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgD--S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 186 GQTLH-IITMQLDRLSKREPTIVWSVLFLRDS--TIASGD--SAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRV 260 (691)
T ss_pred CceEE-EeeecccccccCCceEEEEEEEeecC--cEEEec--CCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeE
Confidence 65422 111 111 33457888887654 667754 899999999999999988865 4789999999999998
Q ss_pred eeeccCCccCCCCeEEEeeCCCCce----eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 278 LSGHGFSSSGDGQKLCLWKYPHMTK----WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
++++. |+.|..|...+.+. ......|...|.+++..++ .|++|+.|..+.+-....
T Consensus 261 fsaGv------d~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 261 FSAGV------DPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EEccC------CCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 88754 88888888766543 2234568888999999877 899999999888766554
No 147
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3.2e-25 Score=185.85 Aligned_cols=269 Identities=16% Similarity=0.263 Sum_probs=208.8
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
+.+.+|.+.|.++...|.|.+||+|+.||+|+||.+.+|.+++++. ..+.|.|++|+|....-++++..+..+.+.+..
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 3456999999999999999999999999999999999999999988 567899999999433333333333334444322
Q ss_pred cC------------------------------------cceeeeeecccCcEEEEEEcCCCCEEEEEeCC---CeEEEEe
Q 040533 161 VS------------------------------------NNVTSRINAHTAEVCGLKWSNEGNLLASGGDD---NLVHVWD 201 (364)
Q Consensus 161 ~~------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd 201 (364)
-+ +.-+...-.|...|..+.|+..|.+|++...+ ..|.|++
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 11 00012233577889999999999999998754 4688999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeee
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSG 280 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~ 280 (364)
+..... ...|....+.|.++.|+|...+++++ ....|++||+..+..+..+... ..+..++.+|.|..|+++
T Consensus 553 LSK~~s---Q~PF~kskG~vq~v~FHPs~p~lfVa----Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 553 LSKRKS---QSPFRKSKGLVQRVKFHPSKPYLFVA----TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred cccccc---cCchhhcCCceeEEEecCCCceEEEE----eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 876544 34444456789999999999888876 3688999999987777665444 568999999999999988
Q ss_pred ccCCccCCCCeEEEeeCCCC-ceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC------C---CCcceec
Q 040533 281 HGFSSSGDGQKLCLWKYPHM-TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP------S---GSGDFVS 350 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~------~---~~~~~~~ 350 (364)
+. |+.+..||+.-. ++.+++..|...+++++|++.-.++++|+.||++.|+.-.-- . .++.+.+
T Consensus 626 s~------d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g 699 (733)
T KOG0650|consen 626 SY------DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG 699 (733)
T ss_pred cC------CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccC
Confidence 54 999999999754 677888999999999999999999999999999999853211 1 2456667
Q ss_pred cCCc----eeeeeeccC
Q 040533 351 HLDG----LLSLKVSPI 363 (364)
Q Consensus 351 ~~~~----v~~~~~sp~ 363 (364)
|... |.++.|+|.
T Consensus 700 H~~~~~~gVLd~~wHP~ 716 (733)
T KOG0650|consen 700 HEKTNDLGVLDTIWHPR 716 (733)
T ss_pred ceeecccceEeecccCC
Confidence 7544 999999996
No 148
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=1.6e-23 Score=176.86 Aligned_cols=255 Identities=11% Similarity=0.098 Sum_probs=186.9
Q ss_pred eecccCCCcc--EEE-EEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEE-ecCCcEEEEecCCcceee
Q 040533 48 SNMMDWGRNN--ILA-IALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVG-YMASKLQLWDAETSKLIR 123 (364)
Q Consensus 48 ~~~~~~~~~~--~~~-~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~ 123 (364)
...++|++++ +++ ++.++.|++||..+++...... .+. .+..++|+|+++.++++ ..++.|++||+.+++.+.
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~ 109 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--SGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLA 109 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence 3457788764 333 4467899999999887644332 333 35788999999977655 468999999999888777
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCC-cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEE-eCCCeEEEEe
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDK-SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASG-GDDNLVHVWD 201 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd 201 (364)
.+.. ...+.+++|+| ++.++++++.++ .+.+||..+.... ... .....+..++|+|++++++++ ..++.|++||
T Consensus 110 ~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~-~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d 185 (300)
T TIGR03866 110 EIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIV-DNV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVID 185 (300)
T ss_pred EeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEE-EEE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEE
Confidence 7653 34568899999 999999888775 4667898765532 222 223345789999999988654 4689999999
Q ss_pred CCCCCCCcceEEeccc-------ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCc
Q 040533 202 HSKMSSSKCLHRFRDH-------RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHH 274 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~ 274 (364)
+++.+. +..+..+ ......++|+|+++.++++.+ .++.+.+||+++++.+..+.....+.+++|+|+|
T Consensus 186 ~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g 260 (300)
T TIGR03866 186 VATRKV---IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG--PANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDE 260 (300)
T ss_pred cCccee---eeeeeecccccccccCCccceEECCCCCEEEEEcC--CCCeEEEEECCCCcEEEEEEeCCCcceEEECCCC
Confidence 886533 3332211 112346889999987666544 4678999999998888776666789999999999
Q ss_pred cceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC
Q 040533 275 KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP 320 (364)
Q Consensus 275 ~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 320 (364)
++|+++. +.++.|.+||+.+++.+..++.. ...+.++++|
T Consensus 261 ~~l~~~~-----~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 261 KYLLTTN-----GVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CEEEEEc-----CCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 9998763 23899999999999999988755 4558888765
No 149
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=1.9e-23 Score=181.53 Aligned_cols=295 Identities=20% Similarity=0.330 Sum_probs=220.8
Q ss_pred CccEEEEEeCCeEEEEECCCCcee---eeeeecCCCCCceEEEEcCCC--CEEEEEecCCcEEEEecCCcceeeeeecCC
Q 040533 55 RNNILAIALGLELYLWKQENGEVQ---KLLKVTGEDDFPTSISWSQDA--KTLAVGYMASKLQLWDAETSKLIRNLEGHD 129 (364)
Q Consensus 55 ~~~~~~~~~~~~i~iw~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 129 (364)
++.++++..++.+.+|+..+.+.. +..-.+...+.|+++. +|.. +.++.|+..|.+.||++++++.+.+++++.
T Consensus 124 Ge~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~ 202 (910)
T KOG1539|consen 124 GEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFF 202 (910)
T ss_pred cceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccc
Confidence 356788888999999998874211 1111222233377774 6643 678999999999999999999999999999
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCCCC
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-LLASGGDDNLVHVWDHSKMSSS 208 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~ 208 (364)
..|+++.-+| --+.++.|..+|+|.+++++.++. +..++...++|+.++|..||+ .+++|+..|.+.+||++.....
T Consensus 203 s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dki-l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 203 SRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDKI-LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI 280 (910)
T ss_pred cceeEeccCC-cceEEEEeccCceEEEEEcccCcE-EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee
Confidence 9999999999 899999999999999999998775 555654469999999999987 5666667799999999864321
Q ss_pred cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC--C---------------------------------
Q 040533 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK--G--------------------------------- 253 (364)
Q Consensus 209 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~--------------------------------- 253 (364)
......|.+.|....|.|.. -++++++ .|+.+++|=..+ |
T Consensus 281 --~v~~nah~~sv~~~~fl~~e-pVl~ta~--~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~ 355 (910)
T KOG1539|consen 281 --NVTRNAHYGSVTGATFLPGE-PVLVTAG--ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQ 355 (910)
T ss_pred --eeeeccccCCcccceecCCC-ceEeecc--CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEeccc
Confidence 11222466666666666654 3444443 355544442210 0
Q ss_pred -----------------------------------------------------------------------------eE-
Q 040533 254 -----------------------------------------------------------------------------TC- 255 (364)
Q Consensus 254 -----------------------------------------------------------------------------~~- 255 (364)
..
T Consensus 356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G 435 (910)
T KOG1539|consen 356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSG 435 (910)
T ss_pred CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccc
Confidence 00
Q ss_pred EEEEecC------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec---cccccceeEEeecCCCCEEE
Q 040533 256 IHSVDTK------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL---QHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 256 ~~~~~~~------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~ 326 (364)
...+++. ..+++++.++.|++.+.|.. .|.|-+|++++|-....+ ..|.++|++++...-++.++
T Consensus 436 ~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S------~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~v 509 (910)
T KOG1539|consen 436 RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS------KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLV 509 (910)
T ss_pred cEEecCccccccCcceEEEEEeccCceEEEecc------CCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEE
Confidence 0011111 24678888888998888865 999999999999998888 58999999999999899999
Q ss_pred EEeCCCcEEEEEeeCCCC-----------------------------------------CcceeccCCceeeeeeccC
Q 040533 327 SAAADETLRFWEAFGPSG-----------------------------------------SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~-----------------------------------------~~~~~~~~~~v~~~~~sp~ 363 (364)
+++.+|.+++||+.+... ++.|.+|.+.|++++|||.
T Consensus 510 sa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D 587 (910)
T KOG1539|consen 510 SAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD 587 (910)
T ss_pred EccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC
Confidence 999999999999887652 1256689999999999995
No 150
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.94 E-value=3.4e-24 Score=167.03 Aligned_cols=265 Identities=17% Similarity=0.272 Sum_probs=202.5
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcc------------eeeeee-cCCCcEEEEEee-------cCCCCEEEEe
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSK------------LIRNLE-GHDKRVATASWN-------HWNGHILTSG 148 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------------~~~~~~-~~~~~v~~~~~~-------~~~~~~l~~~ 148 (364)
....+.|+|||..|++-+.|..+++|++...- ....++ .....|...+|- | +..++++.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeeec
Confidence 34578999999999999999999999985211 011111 134567777774 5 77899999
Q ss_pred eCCCcEEEEEcccCcceeeeeec--ccC---cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec-----ccc
Q 040533 149 SQDKSIINHDVRVSNNVTSRINA--HTA---EVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR-----DHR 218 (364)
Q Consensus 149 ~~dg~i~~~d~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~ 218 (364)
+.+.-|.+||.-+++. ...+.+ |.. ...+++|+|||.+|++|. ...|+++|+......-.+.... +..
T Consensus 130 sr~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cccCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccc
Confidence 9999999999988763 333322 332 356899999999998775 6789999994332222222222 236
Q ss_pred cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 219 AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 219 ~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
+.+.+++|+|....+++.++ ...++-||.-..+.++..+-. .+.|+.+.|.++|+.+++|. -.+..|..||+
T Consensus 208 giisc~a~sP~~~~~~a~gs--Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGa-----Rk~dkIl~WDi 280 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGS--YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGA-----RKDDKILCWDI 280 (406)
T ss_pred ceeeeeeccCCCCcceeeec--ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccc-----cCCCeEEEEee
Confidence 77899999999988999976 889999999888888887754 47899999999999999886 34888999999
Q ss_pred CC-Cceeeecccccc-ceeE--EeecCCCCEEEEEeCCCcEEEEEeeC-CCCCcceeccCCceeeeeeccC
Q 040533 298 PH-MTKWGELQHQTS-RILE--LSQSPDGLTVVSAAADETLRFWEAFG-PSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 298 ~~-~~~~~~~~~~~~-~i~~--i~~~~~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+. ..++..+..|.. .-.. ....|++++|++|+.||.|++||++. +..+..+..+.+.++.++++|+
T Consensus 281 R~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 281 RYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred hhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcc
Confidence 75 566677777654 2233 44568999999999999999999998 6667788889999999999996
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=1.8e-24 Score=171.70 Aligned_cols=244 Identities=21% Similarity=0.370 Sum_probs=186.6
Q ss_pred CCCCCceEEEEcCCCC--EEEEEecCCcEEEEecCC----------------cceeeeeecCCCcEEEEEeecCCCCEEE
Q 040533 85 GEDDFPTSISWSQDAK--TLAVGYMASKLQLWDAET----------------SKLIRNLEGHDKRVATASWNHWNGHILT 146 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iw~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 146 (364)
.|.+.+..+.-++-++ +.|+=+..|.|+||++.. .+.+.++.+|...=+.++|+|.....|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 6777777777777554 555556889999999842 2456778889999999999996667799
Q ss_pred EeeCCCcEEEEEcccCcce--eeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeE
Q 040533 147 SGSQDKSIINHDVRVSNNV--TSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKA 223 (364)
Q Consensus 147 ~~~~dg~i~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 223 (364)
+|..-+.|++|...++.-. ...+.+|+..|..++||| ....|++|+-||+|+|||+|......++.. +.|.+.|+.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNV 307 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNV 307 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceee
Confidence 9999999999998876522 234567999999999999 456999999999999999998765444544 889999999
Q ss_pred EEEccCCCcEEEeecCCCCCeEEEEECCC---CeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC
Q 040533 224 LAWCPYQFNVLASGGGTQDGCIKIWNVQK---GTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 224 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
|.|+.... +|++|+ .||+++|||++. ++++..++. ..+|+++.|+|...-+++.. +.|..|.+||+..
T Consensus 308 ISWnr~~~-lLasG~--DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaas-----g~D~QitiWDlsv 379 (440)
T KOG0302|consen 308 ISWNRREP-LLASGG--DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAAS-----GEDNQITIWDLSV 379 (440)
T ss_pred EEccCCcc-eeeecC--CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEec-----cCCCcEEEEEeec
Confidence 99999886 889987 999999999986 567777764 58899999999766554432 5599999999853
Q ss_pred Cce-----------eeec-----ccc--ccceeEEeecCCC-CEEEEEeCCCcEEEEE
Q 040533 300 MTK-----------WGEL-----QHQ--TSRILELSQSPDG-LTVVSAAADETLRFWE 338 (364)
Q Consensus 300 ~~~-----------~~~~-----~~~--~~~i~~i~~~~~~-~~l~~~~~dg~i~vw~ 338 (364)
..- +..+ --| ...+..+.|+++- .+|++.+.||. .||.
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVfk 436 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVFK 436 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEEE
Confidence 211 1111 113 3457788999864 37888888874 4443
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=1.8e-24 Score=168.88 Aligned_cols=273 Identities=19% Similarity=0.299 Sum_probs=204.6
Q ss_pred cEEEEEeCCeEEEEECCCCceeee---eeecCCCCCceEEEEcCC----CCEEEEEecCCcEEEEecCCcceeeeeecCC
Q 040533 57 NILAIALGLELYLWKQENGEVQKL---LKVTGEDDFPTSISWSQD----AKTLAVGYMASKLQLWDAETSKLIRNLEGHD 129 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~~~~~~~---~~~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 129 (364)
.++|....+.+.+|+....-...+ ..-..|......++|+-+ ..++|+|+.-|.|+|.|+.+++....+.+|.
T Consensus 56 ~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG 135 (385)
T KOG1034|consen 56 QVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHG 135 (385)
T ss_pred ceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccC
Confidence 577777778999998765432222 222357788889999864 3489999999999999999999999999999
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee--eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS--RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS 207 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 207 (364)
..|+.+.+.|...+++++++.|..|++|++++...+.. -..+|.+.|.++.|+++|.++++++.|..+++|++...+.
T Consensus 136 ~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f 215 (385)
T KOG1034|consen 136 GSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEF 215 (385)
T ss_pred ccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHH
Confidence 99999999998889999999999999999998775322 3457999999999999999999999999999999884211
Q ss_pred Ccc----------------------eE---EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECC-CCeE------
Q 040533 208 SKC----------------------LH---RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ-KGTC------ 255 (364)
Q Consensus 208 ~~~----------------------~~---~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~------ 255 (364)
... .. +-.-|...|.|+.|-- .++++-+ -++.|..|... -++.
T Consensus 216 ~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSks--cenaI~~w~pgkl~e~~~~vkp 290 (385)
T KOG1034|consen 216 KNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKS--CENAIVCWKPGKLEESIHNVKP 290 (385)
T ss_pred hhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh---hheeecc--cCceEEEEecchhhhhhhccCC
Confidence 100 00 1123667777777764 3444443 58899999872 1221
Q ss_pred -------EEEEecC-CCe--EEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee--ecc--ccccceeEEeecCC
Q 040533 256 -------IHSVDTK-AQI--CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG--ELQ--HQTSRILELSQSPD 321 (364)
Q Consensus 256 -------~~~~~~~-~~v--~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~~--~~~~~i~~i~~~~~ 321 (364)
+..++.+ ..+ ...+|+|-++.|+.|.. .|.|++||++..++.. ++. .....|...+|+.|
T Consensus 291 ~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq------~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d 364 (385)
T KOG1034|consen 291 PESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ------SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD 364 (385)
T ss_pred CccceeeeeEeccCccceEEEEEeecHHHHHHhhccC------CCcEEEEECCCCCCccCceEEeccccceeeeeeeccc
Confidence 1222222 223 34567788999998865 9999999998776632 121 12357899999999
Q ss_pred CCEEEEEeCCCcEEEEEee
Q 040533 322 GLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 322 ~~~l~~~~~dg~i~vw~~~ 340 (364)
|.+|+...+|++|.-||.-
T Consensus 365 gs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 365 GSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEEeCCCcEEEEEee
Confidence 9999999999999999864
No 153
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.8e-23 Score=176.59 Aligned_cols=262 Identities=19% Similarity=0.340 Sum_probs=206.3
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee-eeeecC-CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI-RNLEGH-DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN 164 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 164 (364)
...|.+++++.+.+.||.+-.+|.|.||++..+-.. ..+.++ +..|.+++|. ++..|++.+.+|.|.-||+.+.++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cCCeEEeecCCceEEEEecccCce
Confidence 567999999999999999999999999999876433 334443 5679999998 466788889999999999998875
Q ss_pred eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 165 VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
...+....+.|++++.+|.+..++.|++||.+..++..... ...-..+....+.|.+++|+|++.. ++.| +.||.
T Consensus 103 -~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~-I~~~r~l~rq~sRvLslsw~~~~~~-i~~G--s~Dg~ 177 (691)
T KOG2048|consen 103 -KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK-ITYKRSLMRQKSRVLSLSWNPTGTK-IAGG--SIDGV 177 (691)
T ss_pred -eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce-EEEEeecccccceEEEEEecCCccE-EEec--ccCce
Confidence 56677788999999999999999999999977777765432 1222334445689999999999844 4554 49999
Q ss_pred EEEEECCCCeEEEEEec-----C----CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeE
Q 040533 245 IKIWNVQKGTCIHSVDT-----K----AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILE 315 (364)
Q Consensus 245 i~i~d~~~~~~~~~~~~-----~----~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 315 (364)
|++||..++..+..... . .-|.++.+-.++ .+++|.. .|.|.+||...+..+..+..|.+.|.+
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS------~G~V~FWd~~~gTLiqS~~~h~adVl~ 250 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS------AGTVTFWDSIFGTLIQSHSCHDADVLA 250 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecC------CceEEEEcccCcchhhhhhhhhcceeE
Confidence 99999999887763321 1 126777777555 4556643 899999999999999999999999999
Q ss_pred EeecCCCCEEEEEeCCCcEEEEEeeCCCCC----cceeccCCceeeeeecc
Q 040533 316 LSQSPDGLTVVSAAADETLRFWEAFGPSGS----GDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 316 i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~----~~~~~~~~~v~~~~~sp 362 (364)
++..+++.++++++.|+.|.-+...+.... .....|...|.+++..+
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec
Confidence 999999999999999999999888776441 12235666677766543
No 154
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=2.6e-24 Score=181.71 Aligned_cols=262 Identities=18% Similarity=0.315 Sum_probs=193.4
Q ss_pred EEEEcC---CCCEEEEEecCCcEEEEecCCcce------eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 92 SISWSQ---DAKTLAVGYMASKLQLWDAETSKL------IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 92 ~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
+..|++ ....|+.+.++|.|.++|...... +.....|.+.|..+.|.| ....|++++.|.++++||+++.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccc
Confidence 456665 346899999999999999865432 345567999999999999 8999999999999999999977
Q ss_pred cceee--eeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCC------------------------CcceEEec
Q 040533 163 NNVTS--RINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSS------------------------SKCLHRFR 215 (364)
Q Consensus 163 ~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~------------------------~~~~~~~~ 215 (364)
+. .. .+.+|...|.+++|.| +...|++|+.||.|.|||++.... .+.+....
T Consensus 133 ~l-~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 133 RL-VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ee-ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 64 33 3779999999999999 556899999999999999875320 01112222
Q ss_pred ccccceeE---EEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe--------cC----CCeEEEEEcCCccceeee
Q 040533 216 DHRAAVKA---LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD--------TK----AQICGLEWNRHHKEILSG 280 (364)
Q Consensus 216 ~~~~~v~~---~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------~~----~~v~~~~~~~~~~~l~~~ 280 (364)
.+...|.+ +.+..|. ..|+++++ .|+.|++||+++........ .+ -.+.++.....|.+|++.
T Consensus 212 A~s~ti~ssvTvv~fkDe-~tlaSaga-~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As 289 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDE-STLASAGA-ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS 289 (720)
T ss_pred cccCceeeeeEEEEEecc-ceeeeccC-CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence 34444444 4444555 45555542 69999999999765433221 11 237788888889999887
Q ss_pred ccCCccCCCCeEEEeeCCCCc--eeeeccccccc--eeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC-CcceeccCCce
Q 040533 281 HGFSSSGDGQKLCLWKYPHMT--KWGELQHQTSR--ILELSQSPDGLTVVSAAADETLRFWEAFGPSG-SGDFVSHLDGL 355 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~~v 355 (364)
.. |+.|++|++.+.. ++..+.++... -..-..+||+.+|++|+.|...++|.+.+.+. ...+.+|.-.|
T Consensus 290 Ct------D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV 363 (720)
T KOG0321|consen 290 CT------DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV 363 (720)
T ss_pred ec------CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEE
Confidence 54 9999999997643 34444443321 12235689999999999999999999998876 44566999999
Q ss_pred eeeeeccC
Q 040533 356 LSLKVSPI 363 (364)
Q Consensus 356 ~~~~~sp~ 363 (364)
++++|.|.
T Consensus 364 t~V~w~pS 371 (720)
T KOG0321|consen 364 TTVRWLPS 371 (720)
T ss_pred EEEeeccc
Confidence 99999884
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2e-25 Score=200.19 Aligned_cols=265 Identities=23% Similarity=0.426 Sum_probs=204.0
Q ss_pred eEEEEcCCCC-EEEEEec----------CCcEEEEecC--Ccc----eeeeeecCCCcEEEEEeecCCCC----EEEEee
Q 040533 91 TSISWSQDAK-TLAVGYM----------ASKLQLWDAE--TSK----LIRNLEGHDKRVATASWNHWNGH----ILTSGS 149 (364)
Q Consensus 91 ~~~~~s~~~~-~l~~~~~----------dg~i~iw~~~--~~~----~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~ 149 (364)
-.++|+|++. ++|+|.. +.++-||.+. +.+ ....+. -..+.+.++|.+ .+. +|+.|.
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~-~g~~~~GlIaGG~ 87 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGS-YGSHSHGLIAGGL 87 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecc-cCCCccceeeccc
Confidence 3578999886 5665532 4456666553 222 233333 356788999988 554 499999
Q ss_pred CCCcEEEEEcccC-----cceeeeeecccCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeE
Q 040533 150 QDKSIINHDVRVS-----NNVTSRINAHTAEVCGLKWSNE-GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKA 223 (364)
Q Consensus 150 ~dg~i~~~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 223 (364)
+||.|.+||...- ...+.....|.+.|..+.|++. +++||+|+.||.|.|||+.+.+..-..- -....+.|.+
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~ 166 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKC 166 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceE
Confidence 9999999998652 2345667789999999999994 5599999999999999998854422111 1224678999
Q ss_pred EEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCccc-eeeeccCCccCCCCeEEEeeCCC
Q 040533 224 LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKE-ILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 224 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
++|+..-.++|++++ .+|++.|||++..+++-.+... ..+..++|+|++.. ++++.. ....-.|.+||++.
T Consensus 167 lsWNrkvqhILAS~s--~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~---dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGS--PSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASG---DDSAPVIQLWDLRF 241 (1049)
T ss_pred eccchhhhHHhhccC--CCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecC---CCCCceeEeecccc
Confidence 999999889999987 8999999999998887766544 34889999998743 222221 02245799999875
Q ss_pred -CceeeeccccccceeEEeecCCC-CEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 300 -MTKWGELQHQTSRILELSQSPDG-LTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 300 -~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
..+++.+++|...|.++.|++.+ ++|++++.|+.|.+|+.++++.+..+....+.+..+.|+|.
T Consensus 242 assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 242 ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPR 307 (1049)
T ss_pred cCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCC
Confidence 45677888999999999999966 89999999999999999999999999888899999999985
No 156
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=7.1e-24 Score=179.29 Aligned_cols=179 Identities=19% Similarity=0.258 Sum_probs=127.5
Q ss_pred CCCCCCCCCCcEEeeCCCCCCCcceeecccCCCccEEEEEeC---CeEEEEECCC--CceeeeeeecCCCCCceEEEEcC
Q 040533 23 GSPTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALG---LELYLWKQEN--GEVQKLLKVTGEDDFPTSISWSQ 97 (364)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~s~ 97 (364)
+......|+..+.+++.+...-..+-+.+.-| ..++|...+ +.+-|.-+.. .+...+-.+.+|.+.|+.+.|+|
T Consensus 11 knt~p~vPk~E~~i~di~vG~~~~~~n~I~aS-~~flAFn~e~~G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~Fsp 89 (1012)
T KOG1445|consen 11 KNTTPKVPKKEETIFDIPVGNLSCTNNGIHAS-ADFLAFNIEGEGGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSP 89 (1012)
T ss_pred ccCCCCCCchhhheeecccccccccCCCcccc-cceEEEeecCCCceEEEEeccccCccccccceeecccceeeccCccc
Confidence 34455667777777777654433333333322 234554433 3566655432 22333445569999999999999
Q ss_pred -CCCEEEEEecCCcEEEEecCCccee------eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee
Q 040533 98 -DAKTLAVGYMASKLQLWDAETSKLI------RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN 170 (364)
Q Consensus 98 -~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 170 (364)
+..+||+|+.|..|+||.+..+... ..+.+.+-.|.++.|+|+.+.++++ +..|.+++||+.+.+. ...+.
T Consensus 90 F~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s-~a~g~v~i~D~stqk~-~~el~ 167 (1012)
T KOG1445|consen 90 FADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILAS-GAHGSVYITDISTQKT-AVELS 167 (1012)
T ss_pred cchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEe-ccCceEEEEEcccCce-eeccc
Confidence 4568999999999999999854221 1233345578899999955555555 5678999999998775 66788
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 171 AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 171 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+|...|.++.|+.||.+|++++.|..|+|||-+.
T Consensus 168 ~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 168 GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred CCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 9999999999999999999999999999999775
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.7e-25 Score=195.86 Aligned_cols=249 Identities=20% Similarity=0.403 Sum_probs=198.8
Q ss_pred CCCCceEEEEcCCCCE----EEEEecCCcEEEEecCC---c---ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEE
Q 040533 86 EDDFPTSISWSQDAKT----LAVGYMASKLQLWDAET---S---KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~----l~~~~~dg~i~iw~~~~---~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
-....+.++|.+.|.. ||.|.+||.|.+||... + ..+.+...|.+.|..+.|++..+++||+|+.||.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 3567889999997765 88889999999999765 2 345667789999999999997778999999999999
Q ss_pred EEEcccCcceeee-eecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc--ceeEEEEccCCC
Q 040533 156 NHDVRVSNNVTSR-INAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA--AVKALAWCPYQF 231 (364)
Q Consensus 156 ~~d~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~ 231 (364)
|||+...+..... -....+.|.+++|+. ....|++++.+|.+.|||++..+ ++..+..+.. .+..++|+|+..
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~---pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK---PIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC---cccccccCCCccceeeeeeCCCCc
Confidence 9999876543322 223557899999988 45688999999999999998753 3555554433 477899999987
Q ss_pred cEEEeecC-CCCCeEEEEECCCC-eEEEEEec-CCCeEEEEEcCCc-cceeeeccCCccCCCCeEEEeeCCCCceeeecc
Q 040533 232 NVLASGGG-TQDGCIKIWNVQKG-TCIHSVDT-KAQICGLEWNRHH-KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 232 ~~~~~~~g-~~d~~i~i~d~~~~-~~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 307 (364)
.-++++++ ...-.|.+||+|.. .+++.+++ ...|.++.|++.+ .+++++ +.|+.|.+|+.++++.+.++.
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSs------gkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSS------GKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcc------cCCCCeeEecCCCceEeeecC
Confidence 66666542 12346999999864 45666654 4679999999988 455544 569999999999999999999
Q ss_pred ccccceeEEeecCCCC-EEEEEeCCCcEEEEEeeCCC
Q 040533 308 HQTSRILELSQSPDGL-TVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 308 ~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~~~~~ 343 (364)
...+.+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus 294 ~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 8889999999999776 78888999999999998765
No 158
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=178.71 Aligned_cols=277 Identities=18% Similarity=0.314 Sum_probs=210.5
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
++..++|.|++ -+..+.+..+.+||.+.|... .++++|.+.|+|++|+.||+.+|+|+.|..|.+|+.+-.. +-.+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll--qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL--QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY 90 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccc--cccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee
Confidence 56778888865 555666789999999999864 4566999999999999999999999999999999854322 2233
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.|...|.|+.|+| -...|++++-. ..-+|....... .. ......+.+.+|..||.+++.|-.+|+|.+-+-..
T Consensus 91 -SH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~V--~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g- 163 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKSV--SK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG- 163 (1081)
T ss_pred -ccCCeeeEeecCc-hHHHhhhcchh-hccccChhhhhH--Hh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCC-
Confidence 4999999999999 88888888754 466887664432 11 12346789999999999999999999999886432
Q ss_pred CCCcceEEecccccceeEEEEccCCC----cEEEeecCCCCCeEEEEECCCCeEEE-EEecCCCeEEEEEcCCccceeee
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQF----NVLASGGGTQDGCIKIWNVQKGTCIH-SVDTKAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~ 280 (364)
+....+....+.+++|.+++|+|... .+++... ...++.+|.+. |+.+. .-...-...++.+.++|.+++.|
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D--W~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiG 240 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD--WGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLG 240 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe--ccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEc
Confidence 22233444456788999999999742 2344433 45566666653 33333 22334557889999999999998
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
+. ++.+.+|- +.|-.+.++......|+.++..|++++++.|+.||+|.-|++-...
T Consensus 241 Gs------dk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 241 GS------DKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred cC------CCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence 55 99999986 5667777777778899999999999999999999999999876543
No 159
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=164.98 Aligned_cols=274 Identities=14% Similarity=0.245 Sum_probs=196.1
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC--CCCEEEEEecCCcEEEEecCCcceeeee--ecCC-CcE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ--DAKTLAVGYMASKLQLWDAETSKLIRNL--EGHD-KRV 132 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~-~~v 132 (364)
++++.+.|.|++||..+++... .++++...+..+.|.. ....+.+|+.||+|++||+++......+ ..+. .+.
T Consensus 43 vav~lSngsv~lyd~~tg~~l~--~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLE--EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred EEEEecCCeEEEEeccchhhhh--eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5556678999999999987644 4458888899999987 4568899999999999999877555433 3343 467
Q ss_pred EEEEeecCCCCEEEEee----CCCcEEEEEcccCcc-eeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCC
Q 040533 133 ATASWNHWNGHILTSGS----QDKSIINHDVRVSNN-VTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMS 206 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 206 (364)
.+++.+. +++++++|. .+-.|.+||++..++ +......|...|+++.|+| +.++|++|+.||.|.+||+....
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 7777776 778888885 356799999998887 4445667999999999999 56799999999999999998765
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC-------------CeEEEEEcCC
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA-------------QICGLEWNRH 273 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-------------~v~~~~~~~~ 273 (364)
....+...-.+...|.++.|...+..-+.+-+ ...+..+|+++.+.+...++.+. .+.. ..+|.
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clT--H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~ 276 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLT--HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPG 276 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEE--ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-cccCC
Confidence 54455555557788999999988733344443 78999999999887654443220 0111 12232
Q ss_pred c-cceeeeccCCccCCCCeEEEee-CC---CCceeeeccc-cccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 274 H-KEILSGHGFSSSGDGQKLCLWK-YP---HMTKWGELQH-QTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 274 ~-~~l~~~~~~~~~~~~~~i~i~d-~~---~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
+ ...+.+.+ +...+.+.... .. ..+.+..+++ |..-|+++.|...+.++.||++||.+.+|...
T Consensus 277 ~~~~~~l~g~---~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 277 DKDTCALAGT---DSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CcceEEEecc---ccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 2 22222211 11233333332 22 2445556666 66778999999999999999999999999953
No 160
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=5.5e-23 Score=172.59 Aligned_cols=271 Identities=16% Similarity=0.236 Sum_probs=205.3
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCC--EEEEEecCCcEEEEecCCc------
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAK--TLAVGYMASKLQLWDAETS------ 119 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iw~~~~~------ 119 (364)
+.+++++...++.++.||+|+||.+.++.+.....+ .+.|.|++|+|.+. .||++-. ..+.|-+..-|
T Consensus 405 ~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~---d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~ 480 (733)
T KOG0650|consen 405 SISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF---DSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVG 480 (733)
T ss_pred EEEecCCcceeeecCCCCcEEEEEeecceEEEEEee---cceeEEEEecCCCCceeEEEEec-CceEEeCccccchhhhc
Confidence 444445445678888999999999999999888876 45799999999765 4555433 33444433211
Q ss_pred -------------------------------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCC---CcEEEEEcccCcce
Q 040533 120 -------------------------------KLIRNLEGHDKRVATASWNHWNGHILTSGSQD---KSIINHDVRVSNNV 165 (364)
Q Consensus 120 -------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~ 165 (364)
.-++..-.|...|..+.|+. .|++|++...+ ..|.|+++.....
T Consensus 481 ~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~s- 558 (733)
T KOG0650|consen 481 PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKS- 558 (733)
T ss_pred chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEEEEecccccc-
Confidence 00122334788999999999 99999998654 4688999875543
Q ss_pred eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeE
Q 040533 166 TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 245 (364)
...+....+.|.++.|+|...+|++++. ..|++||+... ..++.+......|..++.+|.|.++++ |+.|+.+
T Consensus 559 Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~---gs~d~k~ 631 (733)
T KOG0650|consen 559 QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLIL---GSYDKKM 631 (733)
T ss_pred cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEE---ecCCCee
Confidence 3455556678999999999888988875 57999998763 345666666778999999999988888 4489999
Q ss_pred EEEECCCC-eEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC-------C--Cceeeeccccccc--
Q 040533 246 KIWNVQKG-TCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP-------H--MTKWGELQHQTSR-- 312 (364)
Q Consensus 246 ~i~d~~~~-~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~-------~--~~~~~~~~~~~~~-- 312 (364)
..+|+.-. ++.+++..+ ..+++++|++.-.+++++ ++|+.+.|+.-. + --++..+++|...
T Consensus 632 ~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~------sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~ 705 (733)
T KOG0650|consen 632 CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASG------SDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTND 705 (733)
T ss_pred EEEEcccCcchhHHhhhhhhhhhhhhhccccceeeee------cCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecc
Confidence 99999754 455556554 679999999999999887 458999988632 1 2356678888765
Q ss_pred --eeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 313 --ILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 313 --i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
|....|+|...+|++++.||+|++|
T Consensus 706 ~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 706 LGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cceEeecccCCCceEEecCCCceEEee
Confidence 8899999999999999999999998
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=1.4e-22 Score=158.19 Aligned_cols=271 Identities=16% Similarity=0.281 Sum_probs=203.9
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCc------------eeeeeeecCCCCCceEEEEc-------CCCCEEEEE
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGE------------VQKLLKVTGEDDFPTSISWS-------QDAKTLAVG 105 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~------------~~~~~~~~~~~~~v~~~~~s-------~~~~~l~~~ 105 (364)
+.....|+|++ +++-+.|+.+.+|++...- ....... .....|...+|- |+..++|+.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeec
Confidence 47778999986 8888999999999975321 0111111 234567777775 577899999
Q ss_pred ecCCcEEEEecCCcceeeeeec--CCC---cEEEEEeecCCCCEEEEeeCCCcEEEEEc-ccCcce-eee-----eeccc
Q 040533 106 YMASKLQLWDAETSKLIRNLEG--HDK---RVATASWNHWNGHILTSGSQDKSIINHDV-RVSNNV-TSR-----INAHT 173 (364)
Q Consensus 106 ~~dg~i~iw~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~~~~~dg~i~~~d~-~~~~~~-~~~-----~~~~~ 173 (364)
+.+.-|++||.-+|+....+.+ |.. ...+++|+| +|..|++|.. ..|+++|+ +.+... ... -.+..
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeeccc-ceEEEeeccCCCCCCcchhhhhccccccc
Confidence 9999999999999998877654 332 456899999 9999988764 68999998 433311 111 12336
Q ss_pred CcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 174 AEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 174 ~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
+-+.+++|+| +...+++|+....+-||.-.. ..++..+.+|.+.|+.+.|.++|+.++.-+ ..|..|..||++.
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~---~~pl~llggh~gGvThL~~~edGn~lfsGa--Rk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG---RRPLQLLGGHGGGVTHLQWCEDGNKLFSGA--RKDDKILCWDIRY 282 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCC---CCceeeecccCCCeeeEEeccCcCeecccc--cCCCeEEEEeehh
Confidence 7789999999 556999999888887776433 456888889999999999999997655533 3789999999986
Q ss_pred C-eEEEEEecC----CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC-CceeeeccccccceeEEeecCCCCEEE
Q 040533 253 G-TCIHSVDTK----AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH-MTKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 253 ~-~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
- .++..+..+ .+-.-....|.++.|++|.. +|.|++||+++ +..+..+..+...+..++++|--.++|
T Consensus 283 ~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t------dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpila 356 (406)
T KOG2919|consen 283 SRDPVYALERHVGDTNQRILFDLDPKGEILASGDT------DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILA 356 (406)
T ss_pred ccchhhhhhhhccCccceEEEecCCCCceeeccCC------CccEEEEecCCCCCcccccccccccccceecCcccceee
Confidence 4 334443322 23344567799999998854 99999999998 677888888999999999999988888
Q ss_pred EEeCC
Q 040533 327 SAAAD 331 (364)
Q Consensus 327 ~~~~d 331 (364)
+++..
T Consensus 357 tssGq 361 (406)
T KOG2919|consen 357 TSSGQ 361 (406)
T ss_pred eccCc
Confidence 88754
No 162
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.91 E-value=5.1e-21 Score=163.15 Aligned_cols=271 Identities=11% Similarity=0.167 Sum_probs=181.8
Q ss_pred EEEEeCCeEEEEECCC-CceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCC-cce--eeeeecCCCcEE
Q 040533 59 LAIALGLELYLWKQEN-GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAET-SKL--IRNLEGHDKRVA 133 (364)
Q Consensus 59 ~~~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~-~~~--~~~~~~~~~~v~ 133 (364)
++...++.|.+|++.+ ++...+..+ .+.+.+..++++|++++|++++ .++.|.+|+++. ++. ..... ......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 4445689999999964 444333333 3345678899999999987765 578899999873 332 22222 334567
Q ss_pred EEEeecCCCCEEEEee-CCCcEEEEEcccCcce---eeeeecccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCC
Q 040533 134 TASWNHWNGHILTSGS-QDKSIINHDVRVSNNV---TSRINAHTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSSS 208 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~ 208 (364)
.++|+| ++++|++++ .++.|.+|+++..... .... .+.....+++++|+++++++++ .++.|.+||+......
T Consensus 84 ~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 84 HISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred EEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 899999 888777765 4889999999743321 1222 2233467788999998886555 5689999998753211
Q ss_pred cc----eEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC--Ce--EEEEEec-------CCCeEEEEEcCC
Q 040533 209 KC----LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK--GT--CIHSVDT-------KAQICGLEWNRH 273 (364)
Q Consensus 209 ~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~--~~~~~~~-------~~~v~~~~~~~~ 273 (364)
.. ..... .......+.|+|++++++++.. .++.|.+|++.. ++ .+..+.. ......+.++|+
T Consensus 162 ~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~--~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 162 VAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNE--LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cccCCCceecC-CCCCCceEEECCCCCEEEEEec--CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 10 01111 1334678999999988777654 589999999973 32 2333321 112346889999
Q ss_pred ccceeeeccCCccCCCCeEEEeeCCCCceeeecccc---ccceeEEeecCCCCEEEEEeC-CCcEEEEEeeC
Q 040533 274 HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ---TSRILELSQSPDGLTVVSAAA-DETLRFWEAFG 341 (364)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~-dg~i~vw~~~~ 341 (364)
+++++++. ..++.|.+|++.......++..+ ......+.++|+|++|++++. +++|.+|+++.
T Consensus 239 g~~lyv~~-----~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 239 GRHLYACD-----RTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCEEEEec-----CCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 99999874 23789999998654322222222 124568999999999998775 89999999864
No 163
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=8.6e-24 Score=176.21 Aligned_cols=260 Identities=15% Similarity=0.207 Sum_probs=199.5
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC--------cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET--------SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK 152 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 152 (364)
+++..|.+.|+.++|.|....|++++.||.|.+|+++. -+.+.++.+|.++|.|++..+ +++.+++|+-||
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDG 366 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCc
Confidence 35668899999999999999999999999999999932 256778999999999999999 999999999999
Q ss_pred cEEEEEcccC---------cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeE
Q 040533 153 SIINHDVRVS---------NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKA 223 (364)
Q Consensus 153 ~i~~~d~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 223 (364)
+|+.|++... ..+...+.+|.+.++.+++|+....|++++.||+++.|+...... +........+...+
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--cccCCccccCCcce
Confidence 9999966422 134557789999999999999888999999999999999765432 12222222334455
Q ss_pred EEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--------CCeEEEEEcCCccceeeeccCCccCCCCeEEEe
Q 040533 224 LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLW 295 (364)
Q Consensus 224 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~ 295 (364)
+.+-.......++.. .-+.-.++++.....+..+... ..+..+.++|.+...+++.. ++.|+++
T Consensus 445 vd~~ss~~a~~~~s~--~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he------d~~Ir~~ 516 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASF--RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE------DRSIRFF 516 (577)
T ss_pred EeeccchhHhhhhhc--ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc------CCceecc
Confidence 665444322333211 2333334444444444444321 34778899999988888754 9999999
Q ss_pred eCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceecc
Q 040533 296 KYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSH 351 (364)
Q Consensus 296 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 351 (364)
|..+++.+.....|...++++++.|+|.+|++++.||.+++|.+...........|
T Consensus 517 dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 517 DNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred cccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 99999999999999999999999999999999999999999998776655544444
No 164
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=1.1e-22 Score=163.13 Aligned_cols=278 Identities=16% Similarity=0.230 Sum_probs=200.2
Q ss_pred cEEEEEeCCeEEEEECCCCc-------eeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC--------C---
Q 040533 57 NILAIALGLELYLWKQENGE-------VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE--------T--- 118 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~--------~--- 118 (364)
.+.+++.|..|++|.+..++ +.....+..|...|+++.|+|+|+.||+|+.+|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 46778899999999876433 33445577999999999999999999999999999999765 2
Q ss_pred -----cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC
Q 040533 119 -----SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD 193 (364)
Q Consensus 119 -----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 193 (364)
....+.+.+|...|..++|+| ++.++++++-|..+++||+..+. +...+..|...+..++|.|-++++++-+.
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~-l~~~~~dh~~yvqgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQ-LLAILDDHEHYVQGVAWDPLNQYVASKSS 185 (434)
T ss_pred hCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccce-eEeeccccccccceeecchhhhhhhhhcc
Confidence 223456678999999999999 99999999999999999999776 47788899999999999999999999998
Q ss_pred CCeEEEEeCCCCCCCcceE------------------Eecc--cccceeEEEEccCCCcEEEeecCCC-------CCeEE
Q 040533 194 DNLVHVWDHSKMSSSKCLH------------------RFRD--HRAAVKALAWCPYQFNVLASGGGTQ-------DGCIK 246 (364)
Q Consensus 194 d~~i~iwd~~~~~~~~~~~------------------~~~~--~~~~v~~~~~~~~~~~~~~~~~g~~-------d~~i~ 246 (364)
|...+.+.+........+. .+.. -......++|+|+|. ++++.+|.. -+..+
T Consensus 186 dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~-llvtPag~~~~g~~~~~n~tY 264 (434)
T KOG1009|consen 186 DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS-LLVTPAGLFKVGGGVFRNTSY 264 (434)
T ss_pred CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc-EEEcccceeeeCCceeeceeE
Confidence 8877776654322211111 1100 112345678999994 555543211 12334
Q ss_pred EEECCC-CeEEEEEecC-CCeEEEEEcC------------------CccceeeeccCCccCCCCeEEEeeCCCCceeeec
Q 040533 247 IWNVQK-GTCIHSVDTK-AQICGLEWNR------------------HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 247 i~d~~~-~~~~~~~~~~-~~v~~~~~~~------------------~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
+|+-.. .++...+... .+...+.++| -+..++.+. .+.+++||.++..++...
T Consensus 265 vfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-------~~svyvydtq~~~P~~~v 337 (434)
T KOG1009|consen 265 VFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-------KNSVYVYDTQTLEPLAVV 337 (434)
T ss_pred eeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-------cceEEEeccccccceEEE
Confidence 444332 1222222221 2233333333 222233332 789999999998888776
Q ss_pred c-ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 307 Q-HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 307 ~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
. -|-..|+.++|++||..|+..|.||...+-.++..++
T Consensus 338 ~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 338 DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 5 4888999999999999999999999988887776554
No 165
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=8.9e-22 Score=152.61 Aligned_cols=243 Identities=16% Similarity=0.310 Sum_probs=181.8
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECC--CCceeeeeeecCCCCCceEEEEcC--CCCEEEEEecCCcEEEEecCC----
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQE--NGEVQKLLKVTGEDDFPTSISWSQ--DAKTLAVGYMASKLQLWDAET---- 118 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~---- 118 (364)
....+++++.++++++.|+.|+|||.. ++..........|.+.|..+.|.+ -|+.+|+++.|+++.||.-..
T Consensus 17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~ 96 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE 96 (361)
T ss_pred eeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccc
Confidence 345566666789999999999999964 344555556678999999999976 689999999999999997521
Q ss_pred -----cceeeeeecCCCcEEEEEeecC-CCCEEEEeeCCCcEEEEEcccCcce------------eeeeecccCcEEEEE
Q 040533 119 -----SKLIRNLEGHDKRVATASWNHW-NGHILTSGSQDKSIINHDVRVSNNV------------TSRINAHTAEVCGLK 180 (364)
Q Consensus 119 -----~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~------------~~~~~~~~~~v~~~~ 180 (364)
.....++......|+.+.|.|. -|-.|++++.||.++||+......+ ......+..+..|+.
T Consensus 97 ~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs 176 (361)
T KOG2445|consen 97 AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS 176 (361)
T ss_pred cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe
Confidence 1233456667889999999983 3558899999999999987543211 112224667889999
Q ss_pred EcCC---CCEEEEEeCC-----CeEEEEeCCCCC-CCcceEEecccccceeEEEEccCC---CcEEEeecCCCCCeEEEE
Q 040533 181 WSNE---GNLLASGGDD-----NLVHVWDHSKMS-SSKCLHRFRDHRAAVKALAWCPYQ---FNVLASGGGTQDGCIKIW 248 (364)
Q Consensus 181 ~~~~---~~~l~~~~~d-----~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~g~~d~~i~i~ 248 (364)
|+|. ..+||+|+.+ +.+.||...... ....+..+.+|..+|+.++|.|+- .+++++++ .|| |+||
T Consensus 177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~--kDg-v~I~ 253 (361)
T KOG2445|consen 177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT--KDG-VRIF 253 (361)
T ss_pred eccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee--cCc-EEEE
Confidence 9983 4688888866 478899866543 344566777899999999999963 35788876 899 9999
Q ss_pred ECCCC--------------------eEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 249 NVQKG--------------------TCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 249 d~~~~--------------------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
.++.. +.+..+. +.++|..+.|+-.|..|.+. ++||.|++|...
T Consensus 254 ~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsSt------GdDG~VRLWkan 318 (361)
T KOG2445|consen 254 KVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSST------GDDGCVRLWKAN 318 (361)
T ss_pred EEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeec------CCCceeeehhhh
Confidence 98731 1122233 44689999999988888776 569999999864
No 166
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.91 E-value=3.4e-22 Score=174.38 Aligned_cols=267 Identities=18% Similarity=0.244 Sum_probs=199.6
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCcce--eee----eecCCCcEEEEEe
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETSKL--IRN----LEGHDKRVATASW 137 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~--~~~----~~~~~~~v~~~~~ 137 (364)
+.+.+|++.... .+...+ .-...|+|++|+| +..++|.|+.+|.|.+||+..+.. ... ...|..++..+.|
T Consensus 222 ~~~~vW~~~~p~-~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPN-TPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCC-CceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 479999998772 222223 3477899999999 567888899999999999987755 222 2358899999999
Q ss_pred ecCCC--CEEEEeeCCCcEEEEEcccCcceeee-----ee------cccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 040533 138 NHWNG--HILTSGSQDKSIINHDVRVSNNVTSR-----IN------AHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 138 ~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~-----~~------~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 203 (364)
.. +. .-+++++.||.|..|+++.-..+... .. .-...+++++|.+ +...+++|+++|.|.--+-.
T Consensus 300 ~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 300 LQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred ec-cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 65 43 44899999999999988644321111 11 1224678999988 55689999999998773322
Q ss_pred CCCC-C----cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECC-CCeEEEEEecC-CCeEEEEEcCCccc
Q 040533 204 KMSS-S----KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ-KGTCIHSVDTK-AQICGLEWNRHHKE 276 (364)
Q Consensus 204 ~~~~-~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~~-~~v~~~~~~~~~~~ 276 (364)
.... . +....+..|.++|+++.++|.+..++.+++ |.+++||... ...++..+... ..+++++|||....
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeec---cceeEeccccCCCCcchhhhhccceeeeeEEcCcCce
Confidence 2111 1 224455668899999999999988888886 9999999988 66677666554 44999999999877
Q ss_pred eeeeccCCccCCCCeEEEeeCCC--CceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYPH--MTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
+++.. ..+|.+.+||+.. ..++.+...+....+.+.|++.|+.|++|...|.+.+|++...
T Consensus 456 vF~~~-----d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 456 VFATV-----DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EEEEE-----cCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 66543 4599999999854 4555555555666788899999999999999999999999643
No 167
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.91 E-value=4.6e-22 Score=153.02 Aligned_cols=268 Identities=16% Similarity=0.279 Sum_probs=202.0
Q ss_pred CCCceEEEEcC--C-CCEEEEEe----cCCcEEEEecC--Ccceeeee-ecCCCcEEEEEeecCCC-----CEEEEeeCC
Q 040533 87 DDFPTSISWSQ--D-AKTLAVGY----MASKLQLWDAE--TSKLIRNL-EGHDKRVATASWNHWNG-----HILTSGSQD 151 (364)
Q Consensus 87 ~~~v~~~~~s~--~-~~~l~~~~----~dg~i~iw~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~-----~~l~~~~~d 151 (364)
.-.++++.|+. + +.+||.|+ ..+.|.|..+. +++.+..- ..|.-+++.+.|.| +. ++||+++.
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiP-d~~g~~pdlLATs~D- 121 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIP-DSKGVYPDLLATSSD- 121 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecC-CccccCcchhhcccC-
Confidence 34577888884 2 34788887 34667776654 44443322 24889999999999 44 46666543
Q ss_pred CcEEEEEcccCcceee--------eeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccccee
Q 040533 152 KSIINHDVRVSNNVTS--------RINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222 (364)
Q Consensus 152 g~i~~~d~~~~~~~~~--------~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 222 (364)
.+++|.+...+.... .-..+..+++++.|+. +.+++.+++-|-+..|||+..+..+.....+-+|...|.
T Consensus 122 -~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~ 200 (364)
T KOG0290|consen 122 -FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVY 200 (364)
T ss_pred -eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCccee
Confidence 799999874321111 1234667999999998 778999999999999999998755555667778999999
Q ss_pred EEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-c---CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 223 ALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-T---KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~---~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
.++|...+..++++.| .||.+++||++..+.-..+. . ..+...++|++....+++... -+...|.|.|++
T Consensus 201 DIaf~~~s~~~FASvg--aDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~----~dS~~V~iLDiR 274 (364)
T KOG0290|consen 201 DIAFLKGSRDVFASVG--ADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA----MDSNKVVILDIR 274 (364)
T ss_pred EEEeccCccceEEEec--CCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhh----cCCceEEEEEec
Confidence 9999999999999988 89999999999865544432 2 356889999998776665543 347889999998
Q ss_pred C-CceeeeccccccceeEEeecCC-CCEEEEEeCCCcEEEEEeeCCCCC------cceeccCCceeeeeeccCC
Q 040533 299 H-MTKWGELQHQTSRILELSQSPD-GLTVVSAAADETLRFWEAFGPSGS------GDFVSHLDGLLSLKVSPIR 364 (364)
Q Consensus 299 ~-~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~------~~~~~~~~~v~~~~~sp~~ 364 (364)
. ..++.++++|.+.|..|+|.|. ...|++++.|..+-+||+...... -.+ .-.+.|+.+.|+|.+
T Consensus 275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQ 347 (364)
T ss_pred CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccC
Confidence 6 4678899999999999999995 468999999999999999865441 112 246779999999864
No 168
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.91 E-value=2e-21 Score=149.54 Aligned_cols=281 Identities=17% Similarity=0.282 Sum_probs=204.4
Q ss_pred cceeecccCCC----ccEEEEEe-----CCeEEEEEC--CCCceeeeeeecCCCCCceEEEEcCCC-----CEEEEEecC
Q 040533 45 DYYSNMMDWGR----NNILAIAL-----GLELYLWKQ--ENGEVQKLLKVTGEDDFPTSISWSQDA-----KTLAVGYMA 108 (364)
Q Consensus 45 ~~~~~~~~~~~----~~~~~~~~-----~~~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~-----~~l~~~~~d 108 (364)
.+...+++|+. ...+|.++ .+.|.|..+ .+++.....++ .|.-+++.+.|.|+. ++||+.+
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~f-d~~YP~tK~~wiPd~~g~~pdlLATs~-- 120 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANF-DHPYPVTKLMWIPDSKGVYPDLLATSS-- 120 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCC-CCCCCccceEecCCccccCcchhhccc--
Confidence 34577888883 33555553 356666544 45555544443 789999999999976 3566654
Q ss_pred CcEEEEecCCc--cee--e-----eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc--ceeeeeecccCcEE
Q 040533 109 SKLQLWDAETS--KLI--R-----NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN--NVTSRINAHTAEVC 177 (364)
Q Consensus 109 g~i~iw~~~~~--~~~--~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~v~ 177 (364)
..+++|.+... +.. . +-..+..++++..|+..+.+++.+++-|-+..|||++++. .+...+-+|..+|.
T Consensus 121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~ 200 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVY 200 (364)
T ss_pred CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCccee
Confidence 47999998732 111 1 1123567999999998889999999999999999999863 35667779999999
Q ss_pred EEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-CeE
Q 040533 178 GLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-GTC 255 (364)
Q Consensus 178 ~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~ 255 (364)
.++|...+ ..+|+.+.||.|++||+|..+....+..-.....+...++|+++..+++++-. -....|.+.|++. ..+
T Consensus 201 DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~-~dS~~V~iLDiR~P~tp 279 (364)
T KOG0290|consen 201 DIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA-MDSNKVVILDIRVPCTP 279 (364)
T ss_pred EEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhh-cCCceEEEEEecCCCcc
Confidence 99999854 58999999999999999987765555544433567889999999989888764 2456799999987 455
Q ss_pred EEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce------eeeccccccceeEEeecC-CCCEEEE
Q 040533 256 IHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK------WGELQHQTSRILELSQSP-DGLTVVS 327 (364)
Q Consensus 256 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~------~~~~~~~~~~i~~i~~~~-~~~~l~~ 327 (364)
+..+. +.+.|++++|.|....-++. +++|....+||+...-. +..+. ..++|..+.|++ .+..++.
T Consensus 280 va~L~~H~a~VNgIaWaPhS~~hict-----aGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 280 VARLRNHQASVNGIAWAPHSSSHICT-----AGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred eehhhcCcccccceEecCCCCceeee-----cCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEE
Confidence 66665 45789999999987655443 36799999999975332 22222 457899999996 4557776
Q ss_pred EeCCCcEEE
Q 040533 328 AAADETLRF 336 (364)
Q Consensus 328 ~~~dg~i~v 336 (364)
+.. +++.+
T Consensus 354 ~~~-kklei 361 (364)
T KOG0290|consen 354 CFG-KKLEI 361 (364)
T ss_pred Eec-CeeeE
Confidence 654 34443
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=2.8e-21 Score=154.66 Aligned_cols=230 Identities=19% Similarity=0.315 Sum_probs=175.1
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc------ceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCe
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN------NVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNL 196 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 196 (364)
.+.+|.++|..++|+|.+.+.||+|++|.+|.||.+..+. ..+..+.+|...|--++|+| -.+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4568999999999999999999999999999999986543 34667889999999999999 4568999999999
Q ss_pred EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--CCeEEEEEcCCc
Q 040533 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--AQICGLEWNRHH 274 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~ 274 (364)
|.+||+.++.. +.++. |.+.|+++.|+.+|. ++++.+ .|..|+|||.++++.+..-..+ ..-..+.|-.+|
T Consensus 156 v~iWnv~tgea---li~l~-hpd~i~S~sfn~dGs-~l~Ttc--kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 156 VSIWNVGTGEA---LITLD-HPDMVYSMSFNRDGS-LLCTTC--KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred EEEEeccCCce---eeecC-CCCeEEEEEeccCCc-eeeeec--ccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence 99999888654 66665 999999999999995 555554 8999999999999998776433 335667788888
Q ss_pred cceeeeccCCccCCCCeEEEeeCCCCcee---eeccccccceeEEeecCCCCEEEEE-eCCCcEEEEEeeCCCCCcce-e
Q 040533 275 KEILSGHGFSSSGDGQKLCLWKYPHMTKW---GELQHQTSRILELSQSPDGLTVVSA-AADETLRFWEAFGPSGSGDF-V 349 (364)
Q Consensus 275 ~~l~~~~~~~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~-~ 349 (364)
..+.+|.. --.+..+.+||..+.+.. .++. ..+.|.---|.+|...++.+ -.|+.|+.|.+......-.+ .
T Consensus 229 ~i~tTGfs---r~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln 304 (472)
T KOG0303|consen 229 KIFTTGFS---RMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLN 304 (472)
T ss_pred ceeeeccc---cccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEec
Confidence 85555542 234788999998765443 2333 33456667788888887655 46999999999886642211 1
Q ss_pred --ccCCceeeeeeccCC
Q 040533 350 --SHLDGLLSLKVSPIR 364 (364)
Q Consensus 350 --~~~~~v~~~~~sp~~ 364 (364)
...++=.++.|-|.|
T Consensus 305 ~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 305 TFSSKEPQRGMGFMPKR 321 (472)
T ss_pred ccccCCccccccccccc
Confidence 124455566666654
No 170
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=2.2e-21 Score=149.18 Aligned_cols=269 Identities=15% Similarity=0.222 Sum_probs=188.0
Q ss_pred eecccCCC--ccEEEEEeC--------CeEEEEECCCCce-------eeeeeec-CCCCCceEEEEcCCCCEEEEEecCC
Q 040533 48 SNMMDWGR--NNILAIALG--------LELYLWKQENGEV-------QKLLKVT-GEDDFPTSISWSQDAKTLAVGYMAS 109 (364)
Q Consensus 48 ~~~~~~~~--~~~~~~~~~--------~~i~iw~~~~~~~-------~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 109 (364)
+-.++-+| .++++.... ..+.||.+....- ..+..+. .+-+.|.|+.|.|++..+++-. |.
T Consensus 66 vw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn 144 (370)
T KOG1007|consen 66 VWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DN 144 (370)
T ss_pred eehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cC
Confidence 34455555 345554432 3678998764321 1122222 3445899999999999998875 88
Q ss_pred cEEEEecCCcce-eeeee-----cCCCcEEEEEeec-CCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEc
Q 040533 110 KLQLWDAETSKL-IRNLE-----GHDKRVATASWNH-WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182 (364)
Q Consensus 110 ~i~iw~~~~~~~-~~~~~-----~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 182 (364)
.|.+|+++.+.. ...+. .+....++-+|+| .+++.+++. .|+++..||+++..+....-.+|...|..+.|+
T Consensus 145 ~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfN 223 (370)
T KOG1007|consen 145 NIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFN 223 (370)
T ss_pred ceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCC
Confidence 999999988765 33332 2556788889998 466666654 578999999998887777778899999999999
Q ss_pred CCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 183 NEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 183 ~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
|+. .+|++|+.||.|++||.|+.+ .+++.+.+|...|+++.|+|....++.+++ .|..|.+|....-.....+..
T Consensus 224 pnkq~~lvt~gDdgyvriWD~R~tk--~pv~el~~HsHWvW~VRfn~~hdqLiLs~~--SDs~V~Lsca~svSSE~qi~~ 299 (370)
T KOG1007|consen 224 PNKQHILVTCGDDGYVRIWDTRKTK--FPVQELPGHSHWVWAVRFNPEHDQLILSGG--SDSAVNLSCASSVSSEQQIEF 299 (370)
T ss_pred CCceEEEEEcCCCccEEEEeccCCC--ccccccCCCceEEEEEEecCccceEEEecC--CCceeEEEecccccccccccc
Confidence 965 478999999999999998764 568899999999999999999999999987 899999998754322212211
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC-EEEEEeCCCcEEEEEee
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL-TVVSAAADETLRFWEAF 340 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~~ 340 (364)
......- ++ .+..=++= .-....+.++..|...|++++||.-.. .+|+-+.||.+.|=.+.
T Consensus 300 ~~dese~---e~--------------~dseer~k-pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 300 EDDESES---ED--------------EDSEERVK-PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccC---cc--------------hhhHHhcc-cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 1000000 00 00000000 111223456678999999999998666 56778999999886654
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=3.2e-21 Score=154.86 Aligned_cols=269 Identities=17% Similarity=0.276 Sum_probs=197.6
Q ss_pred CCCceEEEEcCCCC-EEEEEecCCcEEEEecCCcc---------eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEE
Q 040533 87 DDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSK---------LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIIN 156 (364)
Q Consensus 87 ~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 156 (364)
..++.++.|.++.. .+|+|+.|..|+||.+..+. ....+..|...|+++.|+| ++++|++|+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence 45789999998766 99999999999999886432 2345678999999999999 9999999999999999
Q ss_pred EEcc--------c-----C--cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccce
Q 040533 157 HDVR--------V-----S--NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAV 221 (364)
Q Consensus 157 ~d~~--------~-----~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 221 (364)
|-.. + . -.....+.+|...|..++|+|++.++++++.|..+++||+..+ +....+..|...+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G---~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG---QLLAILDDHEHYV 168 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc---eeEeecccccccc
Confidence 9765 2 1 1234566789999999999999999999999999999998875 4488888999999
Q ss_pred eEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe--------------------cC----CCeEEEEEcCCccce
Q 040533 222 KALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD--------------------TK----AQICGLEWNRHHKEI 277 (364)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------------------~~----~~v~~~~~~~~~~~l 277 (364)
..++|.|.+.++..-+ .|...+.+++...+.+.... +. .-...++|+|+|.++
T Consensus 169 qgvawDpl~qyv~s~s---~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll 245 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKS---SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL 245 (434)
T ss_pred ceeecchhhhhhhhhc---cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE
Confidence 9999999885554433 57767777665443322221 11 124568899999999
Q ss_pred eeeccCCccCC---CCeEEEeeCCC-CceeeeccccccceeEEeecC------------------CCCEEEEEeCCCcEE
Q 040533 278 LSGHGFSSSGD---GQKLCLWKYPH-MTKWGELQHQTSRILELSQSP------------------DGLTVVSAAADETLR 335 (364)
Q Consensus 278 ~~~~~~~~~~~---~~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~------------------~~~~l~~~~~dg~i~ 335 (364)
++..+....+. -+..++|+-.. .++...+.....+...+.|+| -+-.+|.++. +.|+
T Consensus 246 vtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svy 324 (434)
T KOG1009|consen 246 VTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVY 324 (434)
T ss_pred EcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEE
Confidence 98755332211 23455665443 334445555555555555554 2223455554 5899
Q ss_pred EEEeeCCCCCccee-ccCCceeeeeeccC
Q 040533 336 FWEAFGPSGSGDFV-SHLDGLLSLKVSPI 363 (364)
Q Consensus 336 vw~~~~~~~~~~~~-~~~~~v~~~~~sp~ 363 (364)
|||.....++.... .|-..+++++||+.
T Consensus 325 vydtq~~~P~~~v~nihy~~iTDiaws~d 353 (434)
T KOG1009|consen 325 VYDTQTLEPLAVVDNIHYSAITDIAWSDD 353 (434)
T ss_pred EeccccccceEEEeeeeeeeecceeecCC
Confidence 99999888776665 68999999999975
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=7.7e-21 Score=152.20 Aligned_cols=208 Identities=16% Similarity=0.294 Sum_probs=167.5
Q ss_pred ecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCc-------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcE
Q 040533 83 VTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETS-------KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 154 (364)
..+|.++|..++|+| +.+.+|+|++|.+|.||++..+ +.+..+.+|...|..++|+|...+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 349999999999999 5678999999999999998654 44667889999999999999888999999999999
Q ss_pred EEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc-ceeEEEEccCCCcE
Q 040533 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA-AVKALAWCPYQFNV 233 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 233 (364)
.+||+.+++.++. +. |...|.+++|+.+|.+|++.+.|..|+|||.+++. .+..-.+|.+ .-..+.|-.++. +
T Consensus 157 ~iWnv~tgeali~-l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~---~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 157 SIWNVGTGEALIT-LD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT---VVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred EEEeccCCceeee-cC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc---EeeecccccCCCcceeEEeccCc-e
Confidence 9999999986544 43 99999999999999999999999999999987754 3555556654 344566777775 7
Q ss_pred EEeec-CCCCCeEEEEECCCCe---EEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 234 LASGG-GTQDGCIKIWNVQKGT---CIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 234 ~~~~~-g~~d~~i~i~d~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
+.+|. ...+.++.+||..+-+ ....++..+.|.---|.++...++..+ -.|+.|+-|.+....
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~G-----KGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCG-----KGDSSIRYFEITNEP 297 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEe-----cCCcceEEEEecCCC
Confidence 76653 2257889999976633 345566667788788889888776543 339999999987654
No 173
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.6e-21 Score=152.69 Aligned_cols=269 Identities=14% Similarity=0.186 Sum_probs=201.7
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC------cceeeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEE
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET------SKLIRNLEG-HDKRVATASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
+.+|.+.|.++.|+.++++||+|+.|..+++|+++. .+.+..... |...|.|++|.. ....+++|..+++|.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcceeE
Confidence 348999999999999999999999999999999863 344444433 558999999998 888999999999999
Q ss_pred EEEcccCcceeeeeeccc---CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 156 NHDVRVSNNVTSRINAHT---AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
..|+++.+.+ ..+ .|. +.|..+..+|..+.|++.+.++.|.+||.+..........+.........+.|+|..+.
T Consensus 131 ~HDiEt~qsi-~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 131 KHDIETKQSI-YVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eeecccceee-eee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 9999988753 322 343 48999999998899999999999999999876533334444445667889999999999
Q ss_pred EEEeecCCCCCeEEEEECCCCeE-EEEE------ec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-e
Q 040533 233 VLASGGGTQDGCIKIWNVQKGTC-IHSV------DT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-W 303 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~~~~-~~~~------~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~ 303 (364)
++++.+ ..+-+-+||.+.... +... .. .....+..|+|.|..+++-.. ...-.+||+.+.++ +
T Consensus 209 Li~~~~--~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR------~~~P~~~D~~S~R~~V 280 (609)
T KOG4227|consen 209 LILVNS--ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR------GKCPLYFDFISQRCFV 280 (609)
T ss_pred eEEecc--ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc------cCCCEEeeeeccccee
Confidence 999976 788899999986432 1111 11 123467899999998887543 44556778766433 3
Q ss_pred eecccc------ccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC-----------------------CcceeccCCc
Q 040533 304 GELQHQ------TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG-----------------------SGDFVSHLDG 354 (364)
Q Consensus 304 ~~~~~~------~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~-----------------------~~~~~~~~~~ 354 (364)
.++... ...+.+++|-.| ..+++|+.+-.|++|.+..... +..+.+|.+-
T Consensus 281 ~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv 359 (609)
T KOG4227|consen 281 LKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSV 359 (609)
T ss_pred EeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccc
Confidence 333311 124667778654 4599999999999999864221 2356789999
Q ss_pred eeeeeeccC
Q 040533 355 LLSLKVSPI 363 (364)
Q Consensus 355 v~~~~~sp~ 363 (364)
++.|.|+|-
T Consensus 360 ~NQVRF~~H 368 (609)
T KOG4227|consen 360 PNQVRFSQH 368 (609)
T ss_pred ccceeecCC
Confidence 999999983
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=1.6e-19 Score=160.03 Aligned_cols=266 Identities=27% Similarity=0.485 Sum_probs=212.6
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc-eeeeeecCCC-cEEEEEe-ecCCCC-EEEEeeC-CCcEEEE
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-LIRNLEGHDK-RVATASW-NHWNGH-ILTSGSQ-DKSIINH 157 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~~-~l~~~~~-dg~i~~~ 157 (364)
...|...+.++.+.+.+..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ ++ ++. +++..+. |+.+.+|
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP-DGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECC-CcceEEeccCCCCccEEEE
Confidence 34788999999999999999999999999999998886 6666666443 6777777 77 665 5555444 9999999
Q ss_pred EcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 158 DVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 158 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
+..........+..|...|..++|+|++..+++++. |+.+++|++.. ...+..+..|...+.+++|+|++..++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT---GKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC---CceEEeeccCCCceEEEEEcCCcceEEEE
Confidence 998633446778899999999999999998888885 99999999876 34477777799999999999988645555
Q ss_pred ecCCCCCeEEEEECCCCeEEE-EEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-eeecccccccee
Q 040533 237 GGGTQDGCIKIWNVQKGTCIH-SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-WGELQHQTSRIL 314 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~ 314 (364)
++ .|+.+++||...+.... .+..+.......|+|++..++++ +.++.+++|+...... +..+..|...+.
T Consensus 217 ~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 288 (466)
T COG2319 217 GS--SDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASG------SSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288 (466)
T ss_pred ec--CCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEe------cCCCcEEEeeecCCCcEEEEEecCCccEE
Confidence 34 89999999998887777 45544332222899999777655 4499999999987665 444467889999
Q ss_pred EEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee--ccCCceeeeee
Q 040533 315 ELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV--SHLDGLLSLKV 360 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~v~~~~~ 360 (364)
++.|+|++..+++++.|+.+.+|+........... .|...+..+.|
T Consensus 289 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
T COG2319 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF 336 (466)
T ss_pred EEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE
Confidence 99999988899889999999999888877666655 67777888887
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=1e-18 Score=154.82 Aligned_cols=298 Identities=28% Similarity=0.497 Sum_probs=219.5
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCC-CCceEEEE-cCCCC-EEEEEec-CCcEEEEecCC-cc
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGED-DFPTSISW-SQDAK-TLAVGYM-ASKLQLWDAET-SK 120 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~-s~~~~-~l~~~~~-dg~i~iw~~~~-~~ 120 (364)
+..+.+.+. .++..+.++.+.+|+...+. .....+..+. ..+..+.+ ++++. .++..+. |+.+.+|+... ..
T Consensus 68 i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 146 (466)
T COG2319 68 ITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK 146 (466)
T ss_pred EEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe
Confidence 444555543 35556679999999998875 1122222322 36777777 88887 5555444 89999999988 78
Q ss_pred eeeeeecCCCcEEEEEeecCCCCEEEEeeC-CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-EEEEEeCCCeEE
Q 040533 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQ-DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-LLASGGDDNLVH 198 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~ 198 (364)
....+..|...|..++|+| ++..+++++. |+.+++|++.... ....+..|...+.+++|+|++. .+++++.|+.++
T Consensus 147 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 147 LIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred EEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 8888899999999999999 8888888885 9999999998644 3666777999999999999987 555558999999
Q ss_pred EEeCCCCCCCcceE-EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE-EEEE-ecCCCeEEEEEcCCcc
Q 040533 199 VWDHSKMSSSKCLH-RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC-IHSV-DTKAQICGLEWNRHHK 275 (364)
Q Consensus 199 iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~-~~~~~v~~~~~~~~~~ 275 (364)
+||... ...+. .+..|.... ...|+|++ .++++++ .|+.+++|++..... ...+ .+...+.++.|+|++.
T Consensus 225 ~wd~~~---~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 225 LWDLST---GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297 (466)
T ss_pred EEECCC---CcEEeeecCCCCcce-eEeECCCC-CEEEEec--CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC
Confidence 998763 23344 567777765 44899998 5555655 899999999987664 4444 3457899999999888
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeeecc--ccccceeEEeecCCCCEEEEE-eCCCcEEEEEeeCCCCCcceeccC
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ--HQTSRILELSQSPDGLTVVSA-AADETLRFWEAFGPSGSGDFVSHL 352 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~ 352 (364)
.++++.. ++.+.+|+..+........ .|...+..+.|.+++..++.+ ..|+.+.+|++......... ...
T Consensus 298 ~~~~~~~------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~ 370 (466)
T COG2319 298 LLASGSS------DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL-EGH 370 (466)
T ss_pred EEEEeeC------CCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEe-cCC
Confidence 8887543 6779999998887777665 787789999994343556655 68899999999887722222 222
Q ss_pred Cceeeeeecc
Q 040533 353 DGLLSLKVSP 362 (364)
Q Consensus 353 ~~v~~~~~sp 362 (364)
..+..+.+++
T Consensus 371 ~~~~~~~~~~ 380 (466)
T COG2319 371 SNVLSVSFSP 380 (466)
T ss_pred ceEEEEEECC
Confidence 2267777665
No 176
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=1.2e-20 Score=165.76 Aligned_cols=235 Identities=11% Similarity=0.150 Sum_probs=167.2
Q ss_pred CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC---CcEEEEEcccCcceeeeeecccCcEEEEEEcCC
Q 040533 108 ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD---KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184 (364)
Q Consensus 108 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 184 (364)
+..|.+||.+... .+.+..+...+...+|+| +++.|+.++.+ ..|++||+.++... .+....+....++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~--~l~~~~g~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARK--VVASFRGHNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceE--EEecCCCccCceeECCC
Confidence 4689999986544 556667888899999999 89888887644 36999999876531 12222233446899999
Q ss_pred CCEEEEEe-CCCeEEEE--eCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-CeEEEEEe
Q 040533 185 GNLLASGG-DDNLVHVW--DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-GTCIHSVD 260 (364)
Q Consensus 185 ~~~l~~~~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~ 260 (364)
|+.|+.+. .+|.+.|| |+... ....+..+...+....|+|+++.+++++. .++...+|++.. +.....+.
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~i~f~s~--~~g~~~I~~~~~~~~~~~~l~ 332 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGG----TPSQLTSGAGNNTEPSWSPDGQSILFTSD--RSGSPQVYRMSASGGGASLVG 332 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCC----CeEeeccCCCCcCCEEECCCCCEEEEEEC--CCCCceEEEEECCCCCeEEec
Confidence 99888765 67766555 55432 24455556677889999999987777654 677788887643 22222232
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
... ....|+|+|+.++... ...+.+||+.+++.......+ ....+.|+|||++|+.++.+|.+.+|++.
T Consensus 333 ~~~--~~~~~SpDG~~ia~~~-------~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 333 GRG--YSAQISADGKTLVMIN-------GDNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CCC--CCccCCCCCCEEEEEc-------CCCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 222 4678999999998764 234667999887654332222 23568899999999999999999988874
Q ss_pred --CCCCCcceeccCCceeeeeeccC
Q 040533 341 --GPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 341 --~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++.....+..|.+.+...+|||.
T Consensus 402 ~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 402 SADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCCceEEccCCCCCCCCcccCCC
Confidence 46667778788888999999995
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=6.1e-21 Score=146.81 Aligned_cols=202 Identities=27% Similarity=0.365 Sum_probs=163.1
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCcee-eeee---ecCCCCCceEEEEcC--CCCEEEEEecCCcEEEEecCCc
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGEVQ-KLLK---VTGEDDFPTSISWSQ--DAKTLAVGYMASKLQLWDAETS 119 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~-~~~~---~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~ 119 (364)
.++++.|.|+. .++.-.++.|.+|++..+... .... ..++....++-+|+| +|+.+++.+ |+++..||+++.
T Consensus 125 ~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTM 203 (370)
T ss_pred ceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccch
Confidence 36889999964 555556999999999877542 1111 114566788899998 888888874 899999999998
Q ss_pred ceeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeE
Q 040533 120 KLIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLV 197 (364)
Q Consensus 120 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i 197 (364)
++...+. +|...|..+.|+|....+|++|+.||.|++||.+..+.++..+.+|...|.++.|+| ..+++++|+.|..|
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCcee
Confidence 8776664 688899999999966678999999999999999988888999999999999999999 45689999999999
Q ss_pred EEEeCCCCCC--------------------------CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECC
Q 040533 198 HVWDHSKMSS--------------------------SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 198 ~iwd~~~~~~--------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 251 (364)
.+|....... ...+.++..|.+.|++++|+.-.+.++++-+ .||.+.|=.+.
T Consensus 284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS--YDGRviIs~V~ 361 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS--YDGRVIISSVP 361 (370)
T ss_pred EEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec--cCceEEeecCC
Confidence 9997543210 1224456779999999999999999999987 99999886654
No 178
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.88 E-value=1.3e-20 Score=156.65 Aligned_cols=259 Identities=19% Similarity=0.332 Sum_probs=187.9
Q ss_pred ecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC-------CCCEEEEEecCCcEEEEecCCcc
Q 040533 49 NMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-------DAKTLAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 49 ~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~iw~~~~~~ 120 (364)
+++.|+.. .++.++.|..+.+|.-.+.+......++. ..-.+.+..-+ ....++.++.||.+.|.+ +.++
T Consensus 18 c~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~-df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-k~~r 95 (737)
T KOG1524|consen 18 CCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPD-DFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-KSAR 95 (737)
T ss_pred EeecccccceEEEeccCceEEEeecccchhhhhhhCCc-ccCCccccccccccCCCCCcceEEEEcCCceEEEec-ccch
Confidence 47888774 57788888877777654444333333221 11222222222 224688888999999997 5677
Q ss_pred eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
.-+.+..|.+.+.+-.|+| +|.-|+++++||.|++|.-. +- +...+.....+|.|++|.|+.+-++.+. .+.+.|=
T Consensus 96 VE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrs-GM-LRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IK 171 (737)
T KOG1524|consen 96 VERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRS-GM-LRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIK 171 (737)
T ss_pred hhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEecc-ch-HHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEe
Confidence 7788899999999999999 99999999999999999843 32 2344455678899999999877665554 3456665
Q ss_pred eCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeee
Q 040533 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 280 (364)
-+... ..+...+.|.+-|.++.|++.. .++++|| +|-..++||-.......+-.+..+|++++|+|+ +.++.+
T Consensus 172 pL~~n---~k~i~WkAHDGiiL~~~W~~~s-~lI~sgG--ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 172 PLAAN---SKIIRWRAHDGLVLSLSWSTQS-NIIASGG--EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred ecccc---cceeEEeccCcEEEEeecCccc-cceeecC--CceeEEeecccCcccccCChhccceeeeeeccc-cceeee
Confidence 54432 3367788999999999999987 7889987 999999999875555555556788999999999 444444
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
+ -+.+++= ....+.|..++||+||..++.|...|.+.+=.
T Consensus 245 S-------~nt~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 245 S-------YNTARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred e-------eeeeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 2 3344411 12457899999999999999999999876543
No 179
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=6.9e-21 Score=148.98 Aligned_cols=243 Identities=18% Similarity=0.312 Sum_probs=175.7
Q ss_pred CCCcceeecccCCCc----cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEec
Q 040533 42 LRNDYYSNMMDWGRN----NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDA 116 (364)
Q Consensus 42 ~~~~~~~~~~~~~~~----~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~ 116 (364)
....+|..+-.+... -+++++.-|.|+|.|+.+++..... .+|...|+.+.+.|+. +++++++.|..|++|++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~--~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY--RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce--eccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 444555444444332 2556667799999999998875544 4999999999999965 78999999999999999
Q ss_pred CCcceeeee---ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce---------------------------e
Q 040533 117 ETSKLIRNL---EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV---------------------------T 166 (364)
Q Consensus 117 ~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---------------------------~ 166 (364)
+++.++..+ .+|...|.++.|++ ++.+|++++.|.++++|++...+-. .
T Consensus 166 ~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 166 QTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred cCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 999998876 46999999999999 9999999999999999999743200 0
Q ss_pred eeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-C----------CcceEEecccccceeEE--EEccCCCcE
Q 040533 167 SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS-S----------SKCLHRFRDHRAAVKAL--AWCPYQFNV 233 (364)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~----------~~~~~~~~~~~~~v~~~--~~~~~~~~~ 233 (364)
....-|...|-|+.|- |+++++-+-++.|..|..-... . ...+..+.-....++-+ +|+|.+ .+
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~ 321 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KM 321 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HH
Confidence 0122355566666665 5688998889999999862111 1 11122333333445444 456666 45
Q ss_pred EEeecCCCCCeEEEEECCCCeEE--EEEe---cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 234 LASGGGTQDGCIKIWNVQKGTCI--HSVD---TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 234 ~~~~~g~~d~~i~i~d~~~~~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
++.|. +.|.|.+||++...+. .++. ....|...+|+.++..|+... +|+.|.-||..
T Consensus 322 la~gn--q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc------dd~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGN--QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC------DDGTVWRWDRV 383 (385)
T ss_pred Hhhcc--CCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEe------CCCcEEEEEee
Confidence 66654 8999999999987653 2222 236699999999999998874 49999999853
No 180
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=147.93 Aligned_cols=231 Identities=17% Similarity=0.274 Sum_probs=172.6
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecC-CCCEEEEeeCCCcEEEEEcccCcceee-eeeccc-CcE
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW-NGHILTSGSQDKSIINHDVRVSNNVTS-RINAHT-AEV 176 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~-~~v 176 (364)
..+|++..+|.|++||..+++.+..++++...++.+.|... ..+.+.+++.||+|++||+++...... ....+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 57899999999999999999999999999999999999763 467899999999999999998764332 333444 466
Q ss_pred EEEEEcCCCCEEEEEe----CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 177 CGLKWSNEGNLLASGG----DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
.+++.+..++.+++|. .+-.|.+||+|..+.. .-.-...|...|+++.|+|..+.++++|+ .||.|.+||+..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~~eSH~DDVT~lrFHP~~pnlLlSGS--vDGLvnlfD~~~ 197 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL-LRQLNESHNDDVTQLRFHPSDPNLLLSGS--VDGLVNLFDTKK 197 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccch-hhhhhhhccCcceeEEecCCCCCeEEeec--ccceEEeeecCC
Confidence 7787776788888886 4678999999976431 22334569999999999999999999987 999999999976
Q ss_pred Ce----EEEEEecCCCeEEEEEcCCc--cceeeeccCCccCCCCeEEEeeCCCCceeeeccccc------------ccee
Q 040533 253 GT----CIHSVDTKAQICGLEWNRHH--KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT------------SRIL 314 (364)
Q Consensus 253 ~~----~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~------------~~i~ 314 (364)
.. ++.++.+.+.|..+.|..++ +.....+ .....+|+++.+.+...+.... ..+.
T Consensus 198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH-------~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I 270 (376)
T KOG1188|consen 198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH-------METFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI 270 (376)
T ss_pred CcchhhHHHhhcccceeeeeeeecCCcceEEEEEc-------cCceeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence 42 34556677889999999988 6444443 8899999999887665544221 1122
Q ss_pred EEeecCCCCEEEEEeC-CCcEEEEEee
Q 040533 315 ELSQSPDGLTVVSAAA-DETLRFWEAF 340 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~~-dg~i~vw~~~ 340 (364)
......++..++.++. -|...++-+.
T Consensus 271 ~~~~~~~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 271 NEHSPGDKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred ecccCCCcceEEEeccccCceeEEEee
Confidence 2222234456666555 5666666555
No 181
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.87 E-value=3.3e-20 Score=140.99 Aligned_cols=292 Identities=16% Similarity=0.198 Sum_probs=196.1
Q ss_pred CCCCcEEeeCCCCCCCcceeecccCCC-ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec
Q 040533 29 DFQKEARILDAPNLRNDYYSNMMDWGR-NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM 107 (364)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 107 (364)
.|..|+.++. |.. -.++++.|.. ++++++...|.|.+|++++......+.+ .+...|+.+.--|+ ..|.+-+.
T Consensus 2 ~pPdP~fvLR-p~~---~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~-~g~~~it~lq~~p~-d~l~tqgR 75 (323)
T KOG0322|consen 2 VPPDPFFVLR-PHS---SSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRL-FGRLFITNLQSIPN-DSLDTQGR 75 (323)
T ss_pred CCCCCeeEec-ccc---chheehhhccchhhhcccccceEEEEEeecCccchhhhh-hccceeeceeecCC-cchhhcCC
Confidence 4567777777 322 1355666655 4688888999999999999876655553 56788999998887 45777779
Q ss_pred CCcEEEEecCCcceeeeeecCCCcEEEEEeec-------CCC-CEEEEeeCCCc-EEEEEcccCcceeee----eecccC
Q 040533 108 ASKLQLWDAETSKLIRNLEGHDKRVATASWNH-------WNG-HILTSGSQDKS-IINHDVRVSNNVTSR----INAHTA 174 (364)
Q Consensus 108 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~-~~l~~~~~dg~-i~~~d~~~~~~~~~~----~~~~~~ 174 (364)
|+.+.+|++..+..+.. |.-.++++-|.+ ... ..++.-++... +.+-|.....+ +.. -.+..+
T Consensus 76 d~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq-v~i~dd~~~~Klg 151 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ-VQIADDSERSKLG 151 (323)
T ss_pred CceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccce-eEccCchhccccC
Confidence 99999999987654433 333444444432 011 11222111111 11111111100 110 112345
Q ss_pred cEEEEEEcC-CC--CEEEEEeCCCeEEEEeCCCCC-------CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 175 EVCGLKWSN-EG--NLLASGGDDNLVHVWDHSKMS-------SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 175 ~v~~~~~~~-~~--~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
.+.+..+.. ++ -+++.|.++|.+.+||+.... ..+.......|..+|.++.+.+.-..= ++|+ .+..
T Consensus 152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG-isgg--a~dk 228 (323)
T KOG0322|consen 152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG-ISGG--ADDK 228 (323)
T ss_pred ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC-cCCC--cccc
Confidence 666666533 22 267778899999999998742 123344455688999999998654322 3333 6778
Q ss_pred EEEEECCCC--eEE--EEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeec
Q 040533 245 IKIWNVQKG--TCI--HSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQS 319 (364)
Q Consensus 245 i~i~d~~~~--~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 319 (364)
+..|++... .+. ..+. .+..+..+.+-||++.++++. .|+.|++|..++..++..++.|.+.|.+++|+
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG------WD~RiRVyswrtl~pLAVLkyHsagvn~vAfs 302 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG------WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS 302 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc------cCCcEEEEEeccCCchhhhhhhhcceeEEEeC
Confidence 889988643 221 1122 234588899999999999885 49999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEe
Q 040533 320 PDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 320 ~~~~~l~~~~~dg~i~vw~~ 339 (364)
|+...+|+++.|++|.+|++
T Consensus 303 pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 PDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCchhhhccCCceEEeeec
Confidence 99999999999999999986
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1e-19 Score=162.60 Aligned_cols=285 Identities=18% Similarity=0.271 Sum_probs=202.4
Q ss_pred eecccCCC-ccEEEEE-eCCeEEEEECCCCceeeeeeec-CCCCCceEEEEcC--CCCEEEEEecCCcEEEEecCCc---
Q 040533 48 SNMMDWGR-NNILAIA-LGLELYLWKQENGEVQKLLKVT-GEDDFPTSISWSQ--DAKTLAVGYMASKLQLWDAETS--- 119 (364)
Q Consensus 48 ~~~~~~~~-~~~~~~~-~~~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~--- 119 (364)
...+.++| ...++++ ....|.+||.+.++...-+... .....|+.+.+-. |..++++|+.||.|+||+-...
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~ 1146 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK 1146 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccC
Confidence 34455666 3344444 4579999999988864444321 2245788888865 4568999999999999974322
Q ss_pred --ceeeeee---c----CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEE
Q 040533 120 --KLIRNLE---G----HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLA 189 (364)
Q Consensus 120 --~~~~~~~---~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 189 (364)
+.+.-.. + ..+.-.-+.|....|.++++ +.-..|+|||......+.....+.+..|+++.-+- .|+.++
T Consensus 1147 ~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t-Gd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1147 KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT-GDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CceeEEeeccccccCccCCCCCeeeehhhhCCeEEec-CCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 2222211 1 11111346787745555554 44789999999877655555555566677776544 568999
Q ss_pred EEeCCCeEEEEeCCCCCCCcceEEecccccc--eeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE--EEe----c
Q 040533 190 SGGDDNLVHVWDHSKMSSSKCLHRFRDHRAA--VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH--SVD----T 261 (364)
Q Consensus 190 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~~~----~ 261 (364)
.|..||.|++||.|.......+...+.|+.. |..+.+.+.|-.-+++|+ .||.|++||++...... ++. .
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs--~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS--QDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec--cCCeEEEEecccCcccccceeeecccc
Confidence 9999999999999987666677888888887 999999998866577765 99999999999742221 121 2
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc-------cccceeEEeecCCCCEEEEEeCCCcE
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH-------QTSRILELSQSPDGLTVVSAAADETL 334 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-------~~~~i~~i~~~~~~~~l~~~~~dg~i 334 (364)
++..+++..++....+++|+ .+.|+||++.. +.+..++. ..+.+.+++|+|-.-+||+|+.|.+|
T Consensus 1304 Gs~lTal~VH~hapiiAsGs-------~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGS-------AQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred CccceeeeeccCCCeeeecC-------cceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 34699999999999999884 48999999753 33333332 23467999999999999999999999
Q ss_pred EEEEeeCCC
Q 040533 335 RFWEAFGPS 343 (364)
Q Consensus 335 ~vw~~~~~~ 343 (364)
.||....+.
T Consensus 1376 ~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1376 SIYSCEKPR 1384 (1387)
T ss_pred EEeecCCcC
Confidence 999877654
No 183
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=3e-20 Score=158.46 Aligned_cols=252 Identities=18% Similarity=0.282 Sum_probs=186.9
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR 168 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 168 (364)
.|..++|-|||..|+.+. +..+.+||...|..+.++++|...|.+++|+. +|+.+++|+.|..|.+|...-... .
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~-L-- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGI-L-- 88 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccce-e--
Confidence 789999999999888875 56899999999999999999999999999999 999999999999999999764442 2
Q ss_pred eecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEE
Q 040533 169 INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248 (364)
Q Consensus 169 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~ 248 (364)
...|.+.|.||.|+|-...|++++-. ..-+|..... .+.+.+ ....+.+++|..||. +++.|- .+|+|.+-
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK----~V~K~k-ss~R~~~CsWtnDGq-ylalG~--~nGTIsiR 159 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK----SVSKHK-SSSRIICCSWTNDGQ-YLALGM--FNGTISIR 159 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchh-hccccChhhh----hHHhhh-hheeEEEeeecCCCc-EEEEec--cCceEEee
Confidence 23699999999999988899998754 3667875432 122222 346788999999995 555554 79999998
Q ss_pred ECCCCeEEEEEe----cCCCeEEEEEcCCcc-----ceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeec
Q 040533 249 NVQKGTCIHSVD----TKAQICGLEWNRHHK-----EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQS 319 (364)
Q Consensus 249 d~~~~~~~~~~~----~~~~v~~~~~~~~~~-----~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 319 (364)
+- +++..-.++ ..++|.+++|+|... .+++. ..+.++.+|.+ +|+.+..-+.-.-...++.+.
T Consensus 160 Nk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~------DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf 231 (1081)
T KOG1538|consen 160 NK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA------DWGQTLSFYQL-SGKQIGKDRALNFDPCCISYF 231 (1081)
T ss_pred cC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE------eccceeEEEEe-cceeecccccCCCCchhheec
Confidence 64 444444443 246799999999643 12222 12444444444 244444333333345789999
Q ss_pred CCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 320 PDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 320 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++|.++..|+.|+.+.+|- +.+-.+.++......|+.++..|.
T Consensus 232 ~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PN 274 (1081)
T KOG1538|consen 232 TNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPN 274 (1081)
T ss_pred cCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccC
Confidence 9999999999999999996 344555666556778888888875
No 184
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.9e-19 Score=156.86 Aligned_cols=286 Identities=13% Similarity=0.195 Sum_probs=201.3
Q ss_pred ecccCCCc-cEEEEEeCCeEEEEECCCCceeeeee---ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC--c--c
Q 040533 49 NMMDWGRN-NILAIALGLELYLWKQENGEVQKLLK---VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET--S--K 120 (364)
Q Consensus 49 ~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~--~--~ 120 (364)
..+..++. .+....-+..+.+|+..+.. ..... -..|.-.+++.++||+++++|+|..||.|.+|.--. + .
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence 33444443 35556667788999887754 11111 125677799999999999999999999999997432 1 2
Q ss_pred eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
....+.=|...|.+++|++ +|.+|++|+.+|.+.+|.+.+++ .+.+..-.++|..+.++||+.+.+....|..|.+.
T Consensus 243 t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred cceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 3455667889999999999 99999999999999999999887 45566677899999999999999999999999999
Q ss_pred eCCCCCCCcceEEecc--------cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-----------
Q 040533 201 DHSKMSSSKCLHRFRD--------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT----------- 261 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----------- 261 (364)
...+......+..+.. ..+-.+.++++|.-+.++..+ ..|.|.+||+.+.+.+..+..
T Consensus 320 ~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~---~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n 396 (792)
T KOG1963|consen 320 KASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG---HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN 396 (792)
T ss_pred eccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecC---CCceEEEEeccccceeeeEEEEeecccCCcce
Confidence 8755443333333322 244567888999554444443 789999999987665544421
Q ss_pred -CCCeEEEEEcCCccceeeec-----------------------------------------------------cCCccC
Q 040533 262 -KAQICGLEWNRHHKEILSGH-----------------------------------------------------GFSSSG 287 (364)
Q Consensus 262 -~~~v~~~~~~~~~~~l~~~~-----------------------------------------------------~~~~~~ 287 (364)
.-.+++++.+..|.++++.. ...+.+
T Consensus 397 ~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~ 476 (792)
T KOG1963|consen 397 IQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS 476 (792)
T ss_pred eEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec
Confidence 01234444444444433321 112456
Q ss_pred CCCeEEEeeCCCCceee----------eccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 288 DGQKLCLWKYPHMTKWG----------ELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 288 ~~~~i~i~d~~~~~~~~----------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
.||.+++|-+...+.+. .-.-|..++++++|+.||. +++.+.|++|.+||..+.
T Consensus 477 ~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 477 VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred cCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecCCCh
Confidence 79999999884332221 1113678899999999995 555667889999999884
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.8e-19 Score=134.48 Aligned_cols=231 Identities=15% Similarity=0.235 Sum_probs=171.2
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCC---------c-ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAET---------S-KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
.|.+-+|+|.+++|++|..+|.|.++.+++ + ..+...++|+++++.++|. ..+|++|+. |.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeeccC-ceEEEee
Confidence 466778999999999999999999998853 1 2344557899999999994 566777664 9999887
Q ss_pred cccCcc------eee-eeeccc-----CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEE
Q 040533 159 VRVSNN------VTS-RINAHT-----AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAW 226 (364)
Q Consensus 159 ~~~~~~------~~~-~~~~~~-----~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 226 (364)
.+.... ..+ ....|. -.|++|...|..+-++.++.|+.++-||++++ +....+++|.+.|.++.-
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G---~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG---RIQREYRGHTDYVHSVVG 164 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC---EEEEEEcCCcceeeeeee
Confidence 754321 000 111122 36899999997777777778999999998875 558889999999999988
Q ss_pred ccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC-----------CeEEEEEcCCccceeeeccCCccCCCCeEEEe
Q 040533 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA-----------QICGLEWNRHHKEILSGHGFSSSGDGQKLCLW 295 (364)
Q Consensus 227 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~ 295 (364)
-.....++ +|+ +||++++||+++++++..+.... .|. +..-+...+++|. ...+.+|
T Consensus 165 R~~~~qil-sG~--EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig--ala~~edWlvCGg-------Gp~lslw 232 (325)
T KOG0649|consen 165 RNANGQIL-SGA--EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG--ALAVNEDWLVCGG-------GPKLSLW 232 (325)
T ss_pred cccCccee-ecC--CCccEEEEeccccceeEEeccccChhhcCcccCceeE--EEeccCceEEecC-------CCceeEE
Confidence 44443554 544 99999999999999998875321 133 3334556777764 7889999
Q ss_pred eCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 296 KYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 296 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
.++..++...+.- ..++..+.|..| .+++++..+.|.-|.+..
T Consensus 233 hLrsse~t~vfpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 233 HLRSSESTCVFPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eccCCCceEEEec-ccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 9999888877753 356778888544 677888777888887654
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.9e-19 Score=144.39 Aligned_cols=283 Identities=13% Similarity=0.182 Sum_probs=204.8
Q ss_pred ceeecccCCCcc--EEEEEeCCeEEEEECCCC------ceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC
Q 040533 46 YYSNMMDWGRNN--ILAIALGLELYLWKQENG------EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE 117 (364)
Q Consensus 46 ~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 117 (364)
-+++++.|+.++ +++++.|..+.+|++... +.+.+.. ..|...|.|++|....++|.+|..+++|...|++
T Consensus 57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~-~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE 135 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME-HPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE 135 (609)
T ss_pred cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc-CccccceEEEEEccCCeeEecCCCcceeEeeecc
Confidence 368899998754 455566789999997642 2222222 2566899999999988999999999999999999
Q ss_pred Ccceeeeeec--CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee--eecccCcEEEEEEcCC-CCEEEEEe
Q 040533 118 TSKLIRNLEG--HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR--INAHTAEVCGLKWSNE-GNLLASGG 192 (364)
Q Consensus 118 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~ 192 (364)
+.+.+..+.. ..+.|+.+..+| ..+.|++.+.++.|.+||.+........ ..........+.|+|. ..+|++.+
T Consensus 136 t~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~ 214 (609)
T KOG4227|consen 136 TKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNS 214 (609)
T ss_pred cceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecc
Confidence 9988877652 234899999999 7999999999999999999876532222 2223456778899994 56888888
Q ss_pred CCCeEEEEeCCCCCCCcceE----EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE-EEEEecC-----
Q 040533 193 DDNLVHVWDHSKMSSSKCLH----RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC-IHSVDTK----- 262 (364)
Q Consensus 193 ~d~~i~iwd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~----- 262 (364)
..+-+-+||.+......... .+......-.++.|+|.|..+++.- ....-.+||+-+.++ +..+.+.
T Consensus 215 ~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR---R~~~P~~~D~~S~R~~V~k~D~N~~GY~ 291 (609)
T KOG4227|consen 215 ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR---RGKCPLYFDFISQRCFVLKSDHNPNGYC 291 (609)
T ss_pred ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh---ccCCCEEeeeecccceeEeccCCCCcce
Confidence 88999999998754321111 1111122336788999998888764 345567788877443 3444432
Q ss_pred --CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC-----------------------ceeeeccccccceeEEe
Q 040533 263 --AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM-----------------------TKWGELQHQTSRILELS 317 (364)
Q Consensus 263 --~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~-----------------------~~~~~~~~~~~~i~~i~ 317 (364)
..+.+++|..+.. +++| +++-.|++|.+... +.+..+++|.+-+..+.
T Consensus 292 N~~T~KS~~F~~D~~-v~tG------SD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 292 NIKTIKSMTFIDDYT-VATG------SDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred eeeeeeeeeeeccee-eecc------CcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 2356667765544 5554 56889999987531 12345779999999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEEee
Q 040533 318 QSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 318 ~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
|+|...+|++.+..+.+++|.-.
T Consensus 365 F~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 365 FSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ecCCcceEeccchhhheeccccc
Confidence 99999999999999999999744
No 187
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=2.9e-19 Score=156.94 Aligned_cols=234 Identities=12% Similarity=0.041 Sum_probs=163.1
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC---CcEEEEecCCcceeeeeecCCCcEEEEEeecCC
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA---SKLQLWDAETSKLIRNLEGHDKRVATASWNHWN 141 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 141 (364)
..|++||....... .+..|...+.+++|||||+.|+.++.+ ..|++||+.+++.... ....+....++|+| +
T Consensus 184 ~~i~i~d~dg~~~~---~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSP-D 258 (429)
T PRK01742 184 YEVRVADYDGFNQF---IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSP-D 258 (429)
T ss_pred EEEEEECCCCCCce---EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECC-C
Confidence 58999998766532 234677889999999999999987654 3699999988754222 22223344689999 8
Q ss_pred CCEEEEe-eCCCcEEEE--EcccCcceeeeeecccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCCcceEEeccc
Q 040533 142 GHILTSG-SQDKSIINH--DVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSSSKCLHRFRDH 217 (364)
Q Consensus 142 ~~~l~~~-~~dg~i~~~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 217 (364)
++.|+.+ +.+|.+.+| |+.++. ...+..+...+....|+|||+.|+.++ .++...+|+++..... ...+ .+
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~--~~~l-~~ 333 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG--ASLV-GG 333 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--eEEe-cC
Confidence 8877765 468876666 544433 444556667788999999999777655 5778888876543221 2222 23
Q ss_pred ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 218 RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 218 ~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
.. ....|+|+++.+++++ .+ .+.+||+.+++...... ......+.|+|+|+.++.+.. ++...+|++
T Consensus 334 ~~--~~~~~SpDG~~ia~~~---~~-~i~~~Dl~~g~~~~lt~-~~~~~~~~~sPdG~~i~~~s~------~g~~~~l~~ 400 (429)
T PRK01742 334 RG--YSAQISADGKTLVMIN---GD-NVVKQDLTSGSTEVLSS-TFLDESPSISPNGIMIIYSST------QGLGKVLQL 400 (429)
T ss_pred CC--CCccCCCCCCEEEEEc---CC-CEEEEECCCCCeEEecC-CCCCCCceECCCCCEEEEEEc------CCCceEEEE
Confidence 33 4578999997766654 24 46679998887543322 223467889999999998754 666676664
Q ss_pred --CCCceeeeccccccceeEEeecCC
Q 040533 298 --PHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 298 --~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
.+++....+..|.+.+...+|+|-
T Consensus 401 ~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 401 VSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EECCCCceEEccCCCCCCCCcccCCC
Confidence 467788888888888999999985
No 188
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.85 E-value=4.3e-19 Score=138.62 Aligned_cols=231 Identities=13% Similarity=0.253 Sum_probs=176.3
Q ss_pred eecccCCCcc-EEEEE-eCCeEEEEECCCCc-eeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec-CCc--ce
Q 040533 48 SNMMDWGRNN-ILAIA-LGLELYLWKQENGE-VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA-ETS--KL 121 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~-~~~~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~-~~~--~~ 121 (364)
+.+.+|++++ .+|++ ....|.||.....+ .....++..|...|+.++|+|..+.|++++.|..-+||.. ..+ +.
T Consensus 13 itchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkp 92 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKP 92 (361)
T ss_pred eeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecc
Confidence 7888999875 55555 55699999988887 6777888899999999999999999999999999999998 333 33
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce---eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV---TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVH 198 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 198 (364)
.-.+..++..++++.|+| .++.|++|+....|.||-++..+.- ...-..+...|++++|+|++-+|+.|+.|+..+
T Consensus 93 tlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~r 171 (361)
T KOG1523|consen 93 TLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCR 171 (361)
T ss_pred ceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCccee
Confidence 344556889999999999 9999999999999999988765532 122345678899999999999999999999999
Q ss_pred EEeCC-----CCCC----------CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-EEEEE-ec
Q 040533 199 VWDHS-----KMSS----------SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT-CIHSV-DT 261 (364)
Q Consensus 199 iwd~~-----~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~-~~ 261 (364)
++..- .... +..+..+....+.+..+.|+|+|..+...+ .|..+.+-|..... .+... ..
T Consensus 172 VfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~---Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 172 VFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG---HDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred EEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec---CCCceEEeecCCCchhccchhhc
Confidence 98632 1111 122333334567899999999997666655 69999999987664 22222 23
Q ss_pred CCCeEEEEEcCCccceeeecc
Q 040533 262 KAQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~ 282 (364)
+-+..++.|-.+...+++|..
T Consensus 249 ~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 249 QLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred cCCceeeEeecCCceeecCCC
Confidence 356777777777766666653
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=4.5e-21 Score=167.09 Aligned_cols=262 Identities=15% Similarity=0.248 Sum_probs=195.8
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc
Q 040533 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV 161 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 161 (364)
.+.+|...|+|+.|...|.++++|+.|..++||..+++.++....+|.+.|+.++.+. +.-++++++.|..|++|.+..
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCC
Confidence 4558999999999999999999999999999999999999999999999999999988 888999999999999999998
Q ss_pred CcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec-ccccceeEEEEccCCCcEEEeecCC
Q 040533 162 SNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR-DHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
+.. +..+.+|++.|++++|+|-. +.+.||++++||.+-......-..+. .....+.++.|...+. -+.+++
T Consensus 264 ~~p-vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~-~f~Tgs-- 335 (1113)
T KOG0644|consen 264 GAP-VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD-RFLTGS-- 335 (1113)
T ss_pred Cch-HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc-cccccc--
Confidence 775 77888999999999999954 67889999999987211100000011 1224456666766663 344543
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCc-cceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeec
Q 040533 241 QDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHH-KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQS 319 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 319 (364)
.|+.-..|.+.-..... ..+.-+..+.+- .+.++. -.+-.+++|++.++.....+.+|...+..+.++
T Consensus 336 ~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~a------r~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTA------RNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH 404 (1113)
T ss_pred CCcccccchhhHhhhhc-----cceEEEeccccccccceee------eeeeEeeeeecccchhhhhhcccccceeeeeec
Confidence 78887777654211100 000001111111 222222 227789999999999999999999999999999
Q ss_pred CCCC-EEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 320 PDGL-TVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 320 ~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|-.. ...+++.||...|||+-.+..++.+....+.+.+-+||+.
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqd 449 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQD 449 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCC
Confidence 9654 5578899999999999999887766544556666777763
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=3.4e-18 Score=145.83 Aligned_cols=250 Identities=9% Similarity=0.113 Sum_probs=166.1
Q ss_pred EEEecCCcEEEEecCC-cc--eeeeeecCCCcEEEEEeecCCCCEEEEee-CCCcEEEEEcccCcce--eeeeecccCcE
Q 040533 103 AVGYMASKLQLWDAET-SK--LIRNLEGHDKRVATASWNHWNGHILTSGS-QDKSIINHDVRVSNNV--TSRINAHTAEV 176 (364)
Q Consensus 103 ~~~~~dg~i~iw~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~--~~~~~~~~~~v 176 (364)
++...++.|.+|++.+ ++ .+..+. +.+....++++| ++++|++++ .++.|.+|+++....+ .... ......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p 82 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSP 82 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCc
Confidence 3335689999999964 33 444454 345677899999 888876664 5788999999733221 1111 223456
Q ss_pred EEEEEcCCCCEEEEEeC-CCeEEEEeCCCCC-CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe
Q 040533 177 CGLKWSNEGNLLASGGD-DNLVHVWDHSKMS-SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 254 (364)
..++|+|+++++++++. ++.|.+|++.... ....+..+. +......++++|+++.++++.. .++.|.+||+.+..
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~--~~~~v~v~d~~~~g 159 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL--KEDRIRLFTLSDDG 159 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC--CCCEEEEEEECCCC
Confidence 78999999998888764 7899999986422 112233222 2234677889999988887765 78999999997633
Q ss_pred EEE-------EEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC--Cc--eeeecccc------ccceeEEe
Q 040533 255 CIH-------SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH--MT--KWGELQHQ------TSRILELS 317 (364)
Q Consensus 255 ~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~--~~--~~~~~~~~------~~~i~~i~ 317 (364)
.+. ..........+.|+|+|+++++.. ..++.|.+|++.. ++ .+..+..+ ......+.
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~-----~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVN-----ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEe-----cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence 221 122345567899999999998874 3389999999973 22 23333211 11234688
Q ss_pred ecCCCCEEEEEeC-CCcEEEEEeeCCCCCcceecc---CCceeeeeeccC
Q 040533 318 QSPDGLTVVSAAA-DETLRFWEAFGPSGSGDFVSH---LDGLLSLKVSPI 363 (364)
Q Consensus 318 ~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~---~~~v~~~~~sp~ 363 (364)
++|+|++|+++.. ++.|.+|++.......++.++ ......++|+|.
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~d 284 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHS 284 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCC
Confidence 9999999998854 789999999765433333322 123456777764
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.85 E-value=6.1e-18 Score=134.72 Aligned_cols=242 Identities=13% Similarity=0.187 Sum_probs=180.7
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC--cEEEEEcccCcc
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK--SIINHDVRVSNN 164 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~ 164 (364)
...+..+.|+.+...|..|+.|| .++|+.+..............|-.+-| ...++|..+.+. .+++++.+.+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLF---SSSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLF---SSSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeec---ccceeEEEecCCCceEEEEEcccCce
Confidence 44567777999999999999887 788887765553333334455666777 556676666544 488888875553
Q ss_pred eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 165 VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
+-.. ....+|.++.++.+ .|+++-++. |+|||+++.+....+.....+...+.++++++.+.++..=+ ....|.
T Consensus 81 ICe~--~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~-s~t~Gd 154 (391)
T KOG2110|consen 81 ICEI--FFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPG-STTSGD 154 (391)
T ss_pred EEEE--ecCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecC-CCCCce
Confidence 2222 35677999988754 677676554 99999998766444444444556677777777664554443 346799
Q ss_pred EEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc--cceeEEeecCC
Q 040533 245 IKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT--SRILELSQSPD 321 (364)
Q Consensus 245 i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~~ 321 (364)
|.+||+.+-+.+..+.. .+++.+++|+++|.+++++.. .+..|+++.+.+++.+.+++... ..|.+++|+|+
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASe-----KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASE-----KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEecc-----CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 99999999999888865 588999999999999999852 34458999999999999997543 46889999999
Q ss_pred CCEEEEEeCCCcEEEEEeeCCC
Q 040533 322 GLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 322 ~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
+++|++.|..++|++|.++...
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCeEEEecCCCeEEEEEecccc
Confidence 9999999999999999998654
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=9.3e-21 Score=165.13 Aligned_cols=280 Identities=14% Similarity=0.214 Sum_probs=215.7
Q ss_pred CCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 42 LRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+.+.+|+..++-+..++++++.|..++||..+++.+ +..+.||.+.|+.++.+.+..++|+++.|..|++|.+.++..
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~--lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC--LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeeccchhh--hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence 445667777877777899999999999999888875 455669999999999999999999999999999999999999
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee---ee-cccCcEEEEEEcCCCCEEEEEeCCCeE
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR---IN-AHTAEVCGLKWSNEGNLLASGGDDNLV 197 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i 197 (364)
+..+.+|++.|++++|+| - .+.+.||++++||.+-.. .... .. ....-+.++.|-.++..+++++.|+.-
T Consensus 267 vsvLrghtgavtaiafsP-~----~sss~dgt~~~wd~r~~~-~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea 340 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSP-R----ASSSDDGTCRIWDARLEP-RIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEA 340 (1113)
T ss_pred HHHHhccccceeeeccCc-c----ccCCCCCceEeccccccc-cccCCCCCCcccccceeeeeccccccccccccCCccc
Confidence 999999999999999999 3 378899999999987211 1111 00 122456677777788899999999998
Q ss_pred EEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccc
Q 040533 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKE 276 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~ 276 (364)
..|.+.... .+...+.-+.++.+-..+.+++- .+-.+.+|++.+|...+.+..+ ..+..+.++|-+..
T Consensus 341 ~n~e~~~l~---------~~~~~lif~t~ssd~~~~~~~ar--~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 341 RNHEFEQLA---------WRSNLLIFVTRSSDLSSIVVTAR--NDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred ccchhhHhh---------hhccceEEEeccccccccceeee--eeeEeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence 888754321 12222222222223334445543 6888999999999888776554 66899999998888
Q ss_pred eeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCC
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 345 (364)
++... +.||...|||+-.+.+++.+......+..-+||++|..++....-|.++|.....++..
T Consensus 410 i~msa-----g~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 410 IAMSA-----GYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred hhhhc-----cCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 77544 34999999999999888776544567788899999999998888899999887655443
No 193
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=6.7e-20 Score=153.24 Aligned_cols=251 Identities=14% Similarity=0.164 Sum_probs=182.1
Q ss_pred eeecccCCC--ccEEEEEeCCeEEEEECC------CCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC
Q 040533 47 YSNMMDWGR--NNILAIALGLELYLWKQE------NGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET 118 (364)
Q Consensus 47 ~~~~~~~~~--~~~~~~~~~~~i~iw~~~------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 118 (364)
++.++.+++ ..+++++.++.|.+|+++ ...+.++.++.+|.++|.|++..++++.+.+|+-||+|+.|++..
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~ 375 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPP 375 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCC
Confidence 466677766 458899999999999993 235677888999999999999999999999999999999996542
Q ss_pred c----------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC-CE
Q 040533 119 S----------KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG-NL 187 (364)
Q Consensus 119 ~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 187 (364)
. .....+.+|.+.|+.+++++ ..+.|++++.||+++.|+...............+....+.+-... ..
T Consensus 376 n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~ 454 (577)
T KOG0642|consen 376 NQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAH 454 (577)
T ss_pred CCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHh
Confidence 1 23456789999999999999 888899999999999999876554222211222334556554432 12
Q ss_pred EEEEeCCCeEEEEeCCCCCCCcceEEecc-------cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe
Q 040533 188 LASGGDDNLVHVWDHSKMSSSKCLHRFRD-------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD 260 (364)
Q Consensus 188 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 260 (364)
.++ +.....+++.+......+..+.. ....+..+.++|.. .+..++. .|+.|+++|..+++.+....
T Consensus 455 ~~~---s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~h--ed~~Ir~~dn~~~~~l~s~~ 528 (577)
T KOG0642|consen 455 SLA---SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAH--EDRSIRFFDNKTGKILHSMV 528 (577)
T ss_pred hhh---hcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEecc--cCCceecccccccccchhee
Confidence 222 22333333332222222222221 12346678888888 4555554 89999999999999988765
Q ss_pred c-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc
Q 040533 261 T-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT 310 (364)
Q Consensus 261 ~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 310 (364)
. ...++++++.|+|.+++++.. |+.+++|.+....++.....|.
T Consensus 529 a~~~svtslai~~ng~~l~s~s~------d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 529 AHKDSVTSLAIDPNGPYLMSGSH------DGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eccceecceeecCCCceEEeecC------Cceeehhhccchheeecccccc
Confidence 4 477999999999999999865 9999999998877776665554
No 194
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=3.4e-18 Score=150.54 Aligned_cols=239 Identities=18% Similarity=0.171 Sum_probs=163.2
Q ss_pred CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC---CcEEEEEcccCcceeeeeecccCcEEEEEEcCCC
Q 040533 109 SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD---KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (364)
..|.+||.. +...+.+..+...+.+.+|+| +++.|+..+.+ ..|.+||+.++.. ..+..+.+....+.|+|+|
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCC
Confidence 358999985 444455666778899999999 88888877643 3699999986653 2233344455678999999
Q ss_pred CEEE-EEeCCC--eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC--eEEEEECCCCeEEEEEe
Q 040533 186 NLLA-SGGDDN--LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG--CIKIWNVQKGTCIHSVD 260 (364)
Q Consensus 186 ~~l~-~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~ 260 (364)
+.++ +.+.+| .|++||+..+. ...+..+.......+|+|+++.++.+.. .+| .|.++|+.+++......
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~----~~~lt~~~~~~~~~~~spDG~~l~f~sd--~~g~~~iy~~dl~~g~~~~lt~ 333 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQ----LTRLTNHFGIDTEPTWAPDGKSIYFTSD--RGGRPQIYRVAASGGSAERLTF 333 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCC----eEECccCCCCccceEECCCCCEEEEEEC--CCCCceEEEEECCCCCeEEeec
Confidence 8775 445555 59999987643 3444445555567899999987777653 444 47777877766543333
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC---CcEEEE
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD---ETLRFW 337 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~vw 337 (364)
........+|+|+|++++.... .+....|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.++
T Consensus 334 ~g~~~~~~~~SpDG~~Ia~~~~---~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 334 QGNYNARASVSPDGKKIAMVHG---SGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred CCCCccCEEECCCCCEEEEEEC---CCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 3344557899999999987642 112347999999887654 333 22234567999999988776653 357777
Q ss_pred EeeCCCCCcceeccCCceeeeeeccC
Q 040533 338 EAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++.. .....+..+.+.+...+|||.
T Consensus 409 ~~~g-~~~~~l~~~~g~~~~p~wsp~ 433 (433)
T PRK04922 409 STDG-RVRQRLVSADGEVREPAWSPY 433 (433)
T ss_pred ECCC-CceEEcccCCCCCCCCccCCC
Confidence 7744 344555556677889999984
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.83 E-value=4.2e-18 Score=148.98 Aligned_cols=246 Identities=13% Similarity=0.192 Sum_probs=181.2
Q ss_pred CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce-----eeeeecccCcEEEEEEcC
Q 040533 109 SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV-----TSRINAHTAEVCGLKWSN 183 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-----~~~~~~~~~~v~~~~~~~ 183 (364)
+.+.||+++........-.-...|.++.|+|.+.++++.|..+|.|.+||++..... ......|..++..+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 479999998774444333467899999999999999999999999999999876541 123346889999999977
Q ss_pred CC--CEEEEEeCCCeEEEEeCCCCCCCcceEEec---------ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 184 EG--NLLASGGDDNLVHVWDHSKMSSSKCLHRFR---------DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 184 ~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
+. .-+++++.||.|..|+++....+....... .....+++++|.+...+.++.|. .+|.|.--+...
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT--e~G~v~~~~r~g 379 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT--EEGKVYKGCRKG 379 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc--CCcEEEEEeccC
Confidence 44 449999999999999987654322111111 12346889999998888888876 999988744332
Q ss_pred CeE--------E-EEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC-CCceeeeccccccceeEEeecCCC
Q 040533 253 GTC--------I-HSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP-HMTKWGELQHQTSRILELSQSPDG 322 (364)
Q Consensus 253 ~~~--------~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~ 322 (364)
.+. . .-..+.++|.++.++|-+..++...+ |-.++||... ...++..+..+...+++++|||-.
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g------DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr 453 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG------DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR 453 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeec------cceeEeccccCCCCcchhhhhccceeeeeEEcCcC
Confidence 211 1 11234588999999999888776644 9999999988 788888888888889999999976
Q ss_pred C-EEEEEeCCCcEEEEEeeCCCCC--cceeccCCceeeeeecc
Q 040533 323 L-TVVSAAADETLRFWEAFGPSGS--GDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 323 ~-~l~~~~~dg~i~vw~~~~~~~~--~~~~~~~~~v~~~~~sp 362 (364)
. .++++..||.|.+||+...... .+...+....+.+.|+|
T Consensus 454 pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~ 496 (555)
T KOG1587|consen 454 PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSP 496 (555)
T ss_pred ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCC
Confidence 4 6788888999999999765442 22222344445555555
No 196
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.83 E-value=2.6e-19 Score=140.45 Aligned_cols=289 Identities=15% Similarity=0.213 Sum_probs=202.2
Q ss_pred ccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEE-EecCCcEEEEecCCcceeeeeecC
Q 040533 51 MDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAV-GYMASKLQLWDAETSKLIRNLEGH 128 (364)
Q Consensus 51 ~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~ 128 (364)
..+||+ +.+|...+-.+.|-|.++-+..+++.. -+.|..+.|..|..++++ ...++.|.+|++...+....+...
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH---HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 456774 578888888999999998887766654 456888999988876655 457889999999999988889888
Q ss_pred CCcEEEEEeecCCC-CEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 040533 129 DKRVATASWNHWNG-HILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS 207 (364)
Q Consensus 129 ~~~v~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 207 (364)
..++.+++|+| ++ .+|.+...+-.|.+|.+.+..... +.-.+..+..++|+|+|++.+.+++-.....+.+...+.
T Consensus 91 ~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~--~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 91 QAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKGYL--LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCcceeeeECC-CcceEeeeecceeEEEEEEeccceeEE--ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 89999999999 66 677778889999999998776433 333345568899999999988887543222222222222
Q ss_pred CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccC
Q 040533 208 SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSG 287 (364)
Q Consensus 208 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~ 287 (364)
...+..+....-..+.+.|+|+|..+.+ ||.--.-.+..++..-.+..++|+|.++++++|..
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laV------------wd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsy----- 230 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAV------------WDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSY----- 230 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEE------------ecchhhheeeeeeeccceeEEEeccccceEEeecc-----
Confidence 3344555555666788999999854443 33222222223344456788899999999998854
Q ss_pred CCCeEEEeeCCCCce------------------------------------------------------------eee--
Q 040533 288 DGQKLCLWKYPHMTK------------------------------------------------------------WGE-- 305 (364)
Q Consensus 288 ~~~~i~i~d~~~~~~------------------------------------------------------------~~~-- 305 (364)
|+.+++.+--+.++ +..
T Consensus 231 -D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lk 309 (447)
T KOG4497|consen 231 -DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLK 309 (447)
T ss_pred -chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeeccc
Confidence 77777654211110 000
Q ss_pred ----ccccccceeEEeecCCCCEEEEEeC--CCcEEEEEeeCCCCCcceeccCCceeeeeeccCC
Q 040533 306 ----LQHQTSRILELSQSPDGLTVVSAAA--DETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPIR 364 (364)
Q Consensus 306 ----~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~~ 364 (364)
+......+..++|++|..+++|-.. -+.+.+||+...+....+. ...+|....|.|.|
T Consensus 310 p~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~ 373 (447)
T KOG4497|consen 310 PPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGR 373 (447)
T ss_pred CCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCC
Confidence 1112234667899999999998754 3679999998876655543 47789999999975
No 197
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.5e-17 Score=125.34 Aligned_cols=267 Identities=15% Similarity=0.184 Sum_probs=179.1
Q ss_pred ccCCC--ccEEEEEeCCeEEEEECCCC--------ceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc
Q 040533 51 MDWGR--NNILAIALGLELYLWKQENG--------EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 51 ~~~~~--~~~~~~~~~~~i~iw~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 120 (364)
-+|+| ..++++..+|.|.+..+++. ....+....+|.++|+.++|. ..+|++|+ ||.|+=|......
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEE 92 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhh
Confidence 34555 44677778899999987532 112345556999999999998 45677775 6999999765432
Q ss_pred e------eee--eecC-----CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCE
Q 040533 121 L------IRN--LEGH-----DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL 187 (364)
Q Consensus 121 ~------~~~--~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 187 (364)
. +.. ...| -..|+++...|..+.+|. ++.|+.++-||+++++ +...+++|++.+.++.--.....
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeecccCcc
Confidence 2 101 1112 246889999994555554 4589999999999877 57889999999999988555568
Q ss_pred EEEEeCCCeEEEEeCCCCCCCcceEEe------ccc-ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe
Q 040533 188 LASGGDDNLVHVWDHSKMSSSKCLHRF------RDH-RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD 260 (364)
Q Consensus 188 l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~-~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 260 (364)
+++|++||++++||.++.+..+.+... +.| ...|.+++.+. ..+++|+ ...+.+|+++..++...+.
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGg---Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGG---GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEecC---CCceeEEeccCCCceEEEe
Confidence 999999999999999886543222221 112 23566777654 4666665 5789999999999999999
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCC-CEEEEEeCCCcEEEE
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG-LTVVSAAADETLRFW 337 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~vw 337 (364)
.+.++..+.|..+ .++++ ++.+.+.-|.+. +..-...+......++..|+..- ++|-.++..+.+.|+
T Consensus 245 ipa~v~~v~F~~d--~vl~~------G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 245 IPARVHLVDFVDD--CVLIG------GEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cccceeEeeeecc--eEEEe------ccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 9999999988654 33333 236678777764 23223333322334444444332 345555666666665
No 198
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.4e-19 Score=149.71 Aligned_cols=246 Identities=19% Similarity=0.299 Sum_probs=169.5
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee-cCCCcEEEEEeecCC-CCEEEEeeCCCcEEEEE
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-GHDKRVATASWNHWN-GHILTSGSQDKSIINHD 158 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~~d 158 (364)
.++.||.+-|.|+.|+.+|.+|++|+.|-.+.|||.-..+++..+. +|...|.++.|-|.. .+++++|..|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 4566999999999999999999999999999999998888777664 799999999999854 45788899999999999
Q ss_pred cccC---------cceeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcc-------eEEecccccce
Q 040533 159 VRVS---------NNVTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKC-------LHRFRDHRAAV 221 (364)
Q Consensus 159 ~~~~---------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~v 221 (364)
+... ......+..|...|..++-.|++ +.+.++++||+++-+|++....-++ +..+....-..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 9852 22345567789999999999988 7899999999999999987432111 11111222346
Q ss_pred eEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 222 KALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
.++..+|..+++++.|+ .|-..++||.+... ..+.... ....+|. -+++.++-|.....+
T Consensus 204 k~ltisp~rp~~laVGg--sdpfarLYD~Rr~l--ks~~s~~---~~~~~pp-------------~~~~cv~yf~p~hlk 263 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGG--SDPFARLYDRRRVL--KSFRSDG---TMNTCPP-------------KDCRCVRYFSPGHLK 263 (758)
T ss_pred eeeeecCCCCceEEecC--CCchhhhhhhhhhc--cCCCCCc---cccCCCC-------------cccchhheecCcccc
Confidence 78999999999999987 89999999964321 1111000 0001110 001222222211110
Q ss_pred eeee-ccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCc
Q 040533 302 KWGE-LQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSG 346 (364)
Q Consensus 302 ~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 346 (364)
...- +..-...++.+.|+|+|.-|+..-..-.|+++|+...+...
T Consensus 264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred CcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 0000 00111236778999999766555444579999998877644
No 199
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.83 E-value=1.3e-16 Score=135.75 Aligned_cols=283 Identities=11% Similarity=0.078 Sum_probs=184.9
Q ss_pred ccEEEE--EeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEE
Q 040533 56 NNILAI--ALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVA 133 (364)
Q Consensus 56 ~~~~~~--~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~ 133 (364)
.+++.+ ..++.|.+.|..+.+....+.. ....-..+.|+|||+++++++.||.|.++|+.+++.+.+++.. ....
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~--~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~ 81 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPT--GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPR 81 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE---STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcC--CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcc
Confidence 444443 3579999999999887665543 2333345789999999999999999999999999999998854 4568
Q ss_pred EEEeecCCCCEEEEee-CCCcEEEEEcccCcceeeeeec-------ccCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCCC
Q 040533 134 TASWNHWNGHILTSGS-QDKSIINHDVRVSNNVTSRINA-------HTAEVCGLKWSNEGNLLASGGD-DNLVHVWDHSK 204 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~ 204 (364)
.+++++ ++++++++. ..+.+.++|.++.+. +..+.. ....+.++..+|....++..-. .+.|.+.|...
T Consensus 82 ~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 82 GIAVSP-DGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEE---TTTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred eEEEcC-CCCEEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 899999 888887665 688999999987765 333322 2346778888888875555544 58888888776
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC----------------------
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---------------------- 262 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---------------------- 262 (364)
... .....+ ..........|+|+++++++... .++.|.++|..+++.+..+...
T Consensus 160 ~~~-~~~~~i-~~g~~~~D~~~dpdgry~~va~~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~ 235 (369)
T PF02239_consen 160 PKN-LKVTTI-KVGRFPHDGGFDPDGRYFLVAAN--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWAT 235 (369)
T ss_dssp SSC-EEEEEE-E--TTEEEEEE-TTSSEEEEEEG--GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEE
T ss_pred ccc-cceeee-cccccccccccCcccceeeeccc--ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEee
Confidence 532 112222 23456678999999988888655 5778999998887655443210
Q ss_pred ---------------------------------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 263 ---------------------------------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 263 ---------------------------------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
+.-.-+..+|+++++.+... .+.+.+.|.++|.++.+.+..+...
T Consensus 236 ~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~--~~~~~~~v~viD~~tl~~~~~i~~~ 313 (369)
T PF02239_consen 236 SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTF--LNPDADTVQVIDKKTLKVVKTITPG 313 (369)
T ss_dssp EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-T--T-SSHT-EEEEECCGTEEEE-HHHH
T ss_pred ccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeecc--CCCCCceEEEEECcCcceeEEEecc
Confidence 01123455788888777621 2244789999999999888777533
Q ss_pred c-cceeEEeecCCCCEEEEEeC--CCcEEEEEeeCCCCCccee
Q 040533 310 T-SRILELSQSPDGLTVVSAAA--DETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 310 ~-~~i~~i~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~ 349 (364)
. ..+..+.|+++|+.+..+.. +|.|.+||..+.+.++.+.
T Consensus 314 ~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 314 PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 2 35889999999997765544 3469999999988877765
No 200
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=2.4e-18 Score=134.50 Aligned_cols=226 Identities=16% Similarity=0.260 Sum_probs=176.6
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc--ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN--NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
+.....+|+|.+|++ +...++.+.....|.||.....+ .....+..|...|+.++|+|..+.|++++.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 334567899999999 99999999999999999987655 345678889999999999999999999999999999998
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE-----EEEecCCCeEEEEEcCCccce
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI-----HSVDTKAQICGLEWNRHHKEI 277 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l 277 (364)
..+...++...+..++...+++.|+|.+ +.+++|+ --..|.+|-++..+-- -.....+.|.++.|+|++-++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgS--gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGS--GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcC-ceEEecc--CccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 6666667777777889999999999988 6777766 5677888777654322 111235779999999999999
Q ss_pred eeeccCCccCCCCeEEEeeC------------------CCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 278 LSGHGFSSSGDGQKLCLWKY------------------PHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~------------------~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
++|.. |+..+++.. +-|+.+.++....+.+..+.|+|+|..|+-.+.|+.+.+-|.
T Consensus 162 aaGs~------D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 162 AAGST------DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred ccccc------CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 98855 999999864 113344555556678999999999999999999999999998
Q ss_pred eCCC-CCcceeccCCceeeeee
Q 040533 340 FGPS-GSGDFVSHLDGLLSLKV 360 (364)
Q Consensus 340 ~~~~-~~~~~~~~~~~v~~~~~ 360 (364)
..+. .+..+....-|..++.|
T Consensus 236 ~~p~~~v~~~~~~~lP~ls~~~ 257 (361)
T KOG1523|consen 236 AGPSERVQSVATAQLPLLSVSW 257 (361)
T ss_pred CCCchhccchhhccCCceeeEe
Confidence 8775 23333322244444443
No 201
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=2.6e-17 Score=144.32 Aligned_cols=238 Identities=13% Similarity=0.103 Sum_probs=162.9
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeC---CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ---DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (364)
.|.++|.+.... +.+..+...+...+|+| +++.|+..+. +..+.+|++.+++. ..+......+..+.|+|||+
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 689999875543 44455677899999999 8888876542 34789999986652 22223334455789999999
Q ss_pred EEEEE-eCCC--eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC--eEEEEECCCCeEEEEEec
Q 040533 187 LLASG-GDDN--LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG--CIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 187 ~l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~ 261 (364)
.|+.. +.+| .|++||+.... ...+..+...+....|+|+++.++.+.. .++ .|.++|+.+++.......
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~----~~~lt~~~~~~~~~~wSPDG~~I~f~s~--~~g~~~Iy~~d~~~g~~~~lt~~ 329 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQNLAYTSD--QAGRPQVYKVNINGGAPQRITWE 329 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCC----EEEccCCCCCcCceEECCCCCEEEEEeC--CCCCceEEEEECCCCCeEEeecC
Confidence 88765 3344 58899987643 3344444556788999999987777653 344 455567777655433333
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCc---EEEEE
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET---LRFWE 338 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~---i~vw~ 338 (364)
........|+|+|++++..... .....|.+||+.+++.. .+... .......|+|||++|+.++.++. +.+++
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~---~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSN---GGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CCCccCEEECCCCCEEEEEEcc---CCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 3456678999999998775421 12356899999887643 33221 22346789999999999988765 56666
Q ss_pred eeCCCCCcceeccCCceeeeeeccC
Q 040533 339 AFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+. +.....+.+|.+.+...+|||.
T Consensus 405 ~~-G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 405 TD-GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CC-CCCeEECccCCCCcCCcccCCC
Confidence 63 4555667778888999999995
No 202
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=8.4e-19 Score=133.45 Aligned_cols=267 Identities=18% Similarity=0.227 Sum_probs=180.8
Q ss_pred eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
.+.+.+|.+.|+++.|-.+++ |.+|...|.|++|++++......++ .+...|+.+.-.| + +.+.+-+.|+.+.+|+
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILWT 83 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEEE
Confidence 345558999999999987764 8899999999999999998888887 5778899998887 5 6788899999999999
Q ss_pred cccCcceeeeeecccCcEEEEEEcCC-----CC----EEEEEeCCCe-EEEEeCCCCCCCcceEEe----cccccceeEE
Q 040533 159 VRVSNNVTSRINAHTAEVCGLKWSNE-----GN----LLASGGDDNL-VHVWDHSKMSSSKCLHRF----RDHRAAVKAL 224 (364)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~----~l~~~~~d~~-i~iwd~~~~~~~~~~~~~----~~~~~~v~~~ 224 (364)
+..... ...|.-.++++.|.+. ++ .++.-++... +.+-|.... ..+... .+..+.+++.
T Consensus 84 ia~s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~---tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 84 IAYSAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDT---TQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred ccCcce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCcc---ceeEccCchhccccCceeee
Confidence 975432 2234444555555432 11 1221111110 111121110 001111 1234556666
Q ss_pred EEc-cCCCcEEEeecCCCCCeEEEEECCCCeEEEEE-----------ecCCCeEEEEEcCCccceeeeccCCccCCCCeE
Q 040533 225 AWC-PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV-----------DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKL 292 (364)
Q Consensus 225 ~~~-~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i 292 (364)
.+. ..+.++++.+ |.++|.+.+||+.++..+-.+ .+..++.++.+.+.-..=+.| +.+..+
T Consensus 157 ~~~~~c~s~~llla-GyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg------ga~dkl 229 (323)
T KOG0322|consen 157 DKDHACGSTFLLLA-GYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG------GADDKL 229 (323)
T ss_pred eccccccceEEEEE-eccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC------Cccccc
Confidence 643 2344555544 569999999999997544333 234678888887654433333 337778
Q ss_pred EEeeCCCC--ce--eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 293 CLWKYPHM--TK--WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 293 ~i~d~~~~--~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
..|+++.. .. ..++.-..-.|..+..-||++.+||++.|+.||||..++...+..++-|.+.|++++|||.
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd 304 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD 304 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC
Confidence 88887543 21 1122222345788999999999999999999999999999999999999999999999995
No 203
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=3.3e-17 Score=143.68 Aligned_cols=240 Identities=12% Similarity=0.053 Sum_probs=162.5
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec---CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM---ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG 142 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (364)
.|.++|........+. .+...+.+.+|||||+.|+..+. +..|.+|++.+++... +....+.+..++|+| ++
T Consensus 180 ~l~~~d~dg~~~~~lt---~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SP-DG 254 (429)
T PRK03629 180 ELRVSDYDGYNQFVVH---RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSP-DG 254 (429)
T ss_pred eEEEEcCCCCCCEEee---cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECC-CC
Confidence 7999998876554332 45678999999999999987642 3479999998875433 222334455789999 88
Q ss_pred CEEEEe-eCCC--cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCCCCcceEEecc
Q 040533 143 HILTSG-SQDK--SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD-N--LVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 143 ~~l~~~-~~dg--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~ 216 (364)
+.|+.. +.+| .|.+||+.++. ...+..+...+....|+|+|+.|+..+.+ + .|+++|+.... ...+..
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~lt~ 328 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRITW 328 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEeec
Confidence 877654 4455 48889988665 23343444567889999999988777654 4 44555655432 233333
Q ss_pred cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 217 HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 217 ~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
.........|+|+|+.++.++.......|.+||+.+++.. .+..........|+|+|+.++..... +....+.+++
T Consensus 329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~---~~~~~l~~~~ 404 (429)
T PRK03629 329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQ---GMGSVLNLVS 404 (429)
T ss_pred CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcC---CCceEEEEEE
Confidence 3445567899999988777654112346889999887643 33333334578899999999877531 1123477788
Q ss_pred CCCCceeeeccccccceeEEeecCC
Q 040533 297 YPHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
+ +++....+..|.+.+...+|+|-
T Consensus 405 ~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 405 T-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred C-CCCCeEECccCCCCcCCcccCCC
Confidence 7 55666677778888899999873
No 204
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.2e-19 Score=146.72 Aligned_cols=273 Identities=17% Similarity=0.236 Sum_probs=209.7
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee-ecCCCcEEEEEeecCCC-CEEEEeeCCCcEEEEEc
Q 040533 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL-EGHDKRVATASWNHWNG-HILTSGSQDKSIINHDV 159 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~~~d~ 159 (364)
.+..|.+.|..+.|+..|..|++|+.|..|.+||...++....+ .+|...|....|.|..+ ..+++++.||.+++-.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 45689999999999999999999999999999999888776655 46888898888988543 57889999999998776
Q ss_pred ccCcce--eeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc---ceeEEEEccCCCcE
Q 040533 160 RVSNNV--TSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA---AVKALAWCPYQFNV 233 (364)
Q Consensus 160 ~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~ 233 (364)
...+.+ ...+..|.++|..++.-|+. .-|.+++.|+.+.-+|++..........-..+.. ....++.+|...+.
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 544432 34566799999999999954 5799999999999999987654333333333333 56789999999999
Q ss_pred EEeecCCCCCeEEEEECCCCeE------EEEE-------ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC-
Q 040533 234 LASGGGTQDGCIKIWNVQKGTC------IHSV-------DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH- 299 (364)
Q Consensus 234 ~~~~~g~~d~~i~i~d~~~~~~------~~~~-------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~- 299 (364)
+++++ .|..+++||.+.-.. +..+ .....|++++++.++..+++... |-.|+++.-..
T Consensus 297 faVgG--~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn------De~IYLF~~~~~ 368 (559)
T KOG1334|consen 297 FAVGG--SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN------DEDIYLFNKSMG 368 (559)
T ss_pred cccCC--hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec------ccceEEeccccc
Confidence 99987 999999999875321 1222 12345999999988877777754 88899995422
Q ss_pred -C----------ceeee-cccccc--ceeEEe-ecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 300 -M----------TKWGE-LQHQTS--RILELS-QSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 300 -~----------~~~~~-~~~~~~--~i~~i~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
+ ..+.. +++|.. .|..+- |-|...|+++||.-|.|.||+-.+++.+..+.+-...|+||.=+|
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP 446 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP 446 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence 2 12222 667764 355664 467889999999999999999999998888777666888887665
No 205
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.8e-18 Score=133.80 Aligned_cols=239 Identities=15% Similarity=0.226 Sum_probs=167.4
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce-
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV- 165 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~- 165 (364)
-.+..++|++.-..+|++..|-.|++|+-.. +....++ .....|++++|-|.....|+.|+..| |.+|........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 4567899999777788999999999999766 4444444 34568999999997778888888765 788976532211
Q ss_pred ------------eeeeecccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 166 ------------TSRINAHTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 166 ------------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
+....+| .+|++|.|.+||..+++++ .|..|.|||..++.. .++. ....+.+.-+.|+|++..
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-~pL~--~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-IPLI--PKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-cccc--ccCCCceeeEEEcCCCCE
Confidence 1122234 6899999999999999988 467899999887654 2232 234567889999999988
Q ss_pred EEEeecCCCCCeEEEEEC-CCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc----------
Q 040533 233 VLASGGGTQDGCIKIWNV-QKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT---------- 301 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~---------- 301 (364)
++++. -|+..++|+. ++....+-.-..+.|...+|+|.|++|+... .+.-++|.+...+
T Consensus 253 lfaAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~-------sgsp~lysl~f~~~~~~~~~~~~ 322 (445)
T KOG2139|consen 253 LFAAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC-------SGSPRLYSLTFDGEDSVFLRPQS 322 (445)
T ss_pred EEEec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE-------cCCceEEEEeecCCCccccCccc
Confidence 88865 5999999954 4444555555567899999999999987654 3333444432100
Q ss_pred -----eeeecc-----c----cccceeEEeecCCCCEEEEEeCCC--------cEEEEEeeCC
Q 040533 302 -----KWGELQ-----H----QTSRILELSQSPDGLTVVSAAADE--------TLRFWEAFGP 342 (364)
Q Consensus 302 -----~~~~~~-----~----~~~~i~~i~~~~~~~~l~~~~~dg--------~i~vw~~~~~ 342 (364)
.+..++ . -.+++.+++|+|.|.+||+.-..+ .|.+||....
T Consensus 323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 011111 1 146789999999999999875433 3666776543
No 206
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=6.2e-19 Score=146.80 Aligned_cols=199 Identities=18% Similarity=0.314 Sum_probs=152.9
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEe
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASW 137 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 137 (364)
++..+.||.+.+.+-. +++... ...|.+.+.+-.|+|||.-|+++++||.|++|. ++|-+..++-....+|.|++|
T Consensus 78 ~~i~s~DGkf~il~k~-~rVE~s--v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKS-ARVERS--ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred EEEEcCCceEEEeccc-chhhhh--hhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 6777889999998743 444333 348999999999999999999999999999998 455544555557789999999
Q ss_pred ecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc
Q 040533 138 NHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH 217 (364)
Q Consensus 138 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 217 (364)
.|+..+.+++.+. .+.+=-+..... ....++|.+-|.++.|++..+++++|++|-..++||-. +..+..-..|
T Consensus 154 ~p~S~~vl~c~g~--h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~----G~~Lf~S~~~ 226 (737)
T KOG1524|consen 154 APNSNSIVFCQGG--HISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ----GANLFTSAAE 226 (737)
T ss_pred CCCCCceEEecCC--eEEEeecccccc-eeEEeccCcEEEEeecCccccceeecCCceeEEeeccc----CcccccCChh
Confidence 9966666665543 455545543333 55678999999999999999999999999999999943 3557777789
Q ss_pred ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeecc
Q 040533 218 RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 218 ~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 282 (364)
..+|++++|+|+ .+++.++ -+++++=. ...+.|..++||+||..+++|.+
T Consensus 227 ey~ITSva~npd--~~~~v~S---~nt~R~~~----------p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 227 EYAITSVAFNPE--KDYLLWS---YNTARFSS----------PRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred ccceeeeeeccc--cceeeee---eeeeeecC----------CCccceEEEEEcCCCceeecccc
Confidence 999999999998 3555443 34455211 12367899999999999998864
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3e-17 Score=130.51 Aligned_cols=283 Identities=16% Similarity=0.211 Sum_probs=185.9
Q ss_pred cceeecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEecCCc--
Q 040533 45 DYYSNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDAETS-- 119 (364)
Q Consensus 45 ~~~~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~-- 119 (364)
+..+..++|++. .++.++.|..|++|+-+......+.. .....|+|++|-|.+ ..|++|+.. -|.||.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks--~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKS--VSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecc--hhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccc
Confidence 345677899884 35667788999999987744332222 346679999999954 578888865 4999986532
Q ss_pred --ce----------eeeeecCCCcEEEEEeecCCCCEEEEeeC-CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC
Q 040533 120 --KL----------IRNLEGHDKRVATASWNHWNGHILTSGSQ-DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 120 --~~----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (364)
.. +....+| .+|++++|++ ++..+++++. |..|.+||..++...... ..-.+.+.-+.||||+.
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGD 251 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCC
Confidence 11 1122334 6899999999 8888888874 568999999988753322 23446788999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC----C--------e
Q 040533 187 LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK----G--------T 254 (364)
Q Consensus 187 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~----~--------~ 254 (364)
+|+.+.-|+..++|+....-. ..+-. ...+.|...+|+|.|+.++.+.+ |.-++|.+.- . +
T Consensus 252 ~lfaAt~davfrlw~e~q~wt--~erw~-lgsgrvqtacWspcGsfLLf~~s----gsp~lysl~f~~~~~~~~~~~~~k 324 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWT--KERWI-LGSGRVQTACWSPCGSFLLFACS----GSPRLYSLTFDGEDSVFLRPQSIK 324 (445)
T ss_pred EEEEecccceeeeehhcccce--eccee-ccCCceeeeeecCCCCEEEEEEc----CCceEEEEeecCCCccccCcccce
Confidence 999999999999996543221 12222 23458999999999999988865 4444554421 0 0
Q ss_pred E---EEEE------e----cCCCeEEEEEcCCccceeeeccCCc--cCCCCeEEEeeCCCCceeeecc-c--cccceeEE
Q 040533 255 C---IHSV------D----TKAQICGLEWNRHHKEILSGHGFSS--SGDGQKLCLWKYPHMTKWGELQ-H--QTSRILEL 316 (364)
Q Consensus 255 ~---~~~~------~----~~~~v~~~~~~~~~~~l~~~~~~~~--~~~~~~i~i~d~~~~~~~~~~~-~--~~~~i~~i 316 (364)
. +..+ . ..+++.+++|+|.|.++++...-.. ..-...|.+||.+..-.+.-.. + .......|
T Consensus 325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~I 404 (445)
T KOG2139|consen 325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYI 404 (445)
T ss_pred eeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceE
Confidence 0 1111 1 1356889999999999998753100 0012346677765433332210 1 11224556
Q ss_pred eecC---CCCEEEEEeCCCcEEEEEee
Q 040533 317 SQSP---DGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 317 ~~~~---~~~~l~~~~~dg~i~vw~~~ 340 (364)
.|+| +|.+|..+=..|.+.-|++.
T Consensus 405 sF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 405 SFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EeeecccCCcEEEEEeccCceEeeeeE
Confidence 6766 66777777777888877764
No 208
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.4e-16 Score=140.20 Aligned_cols=286 Identities=16% Similarity=0.194 Sum_probs=205.5
Q ss_pred ccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCC---CEEEEEecCCcEEEEecCCcceeeeee
Q 040533 51 MDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDA---KTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 51 ~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
-.++++ ..+.+..+..|.||...++++.. .+.+|..+++.+.+.|.. .++.+++.+|.|++||...+.+++++.
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~--~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTATGECIT--SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecchHhhhh--hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 345554 47778889999999999999866 566999999999998854 467789999999999999888877765
Q ss_pred cCCCcEEEEEeecC----------------------------------------------------------CCCEEEEe
Q 040533 127 GHDKRVATASWNHW----------------------------------------------------------NGHILTSG 148 (364)
Q Consensus 127 ~~~~~v~~~~~~~~----------------------------------------------------------~~~~l~~~ 148 (364)
.+ .++..+.+.|. .+.+...
T Consensus 100 ~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i- 177 (792)
T KOG1963|consen 100 NN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGI- 177 (792)
T ss_pred cC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEE-
Confidence 32 12222222110 1111111
Q ss_pred eCCCcEEEEEcccCccee---eeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CCCCcceEEecccccceeEE
Q 040533 149 SQDKSIINHDVRVSNNVT---SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK-MSSSKCLHRFRDHRAAVKAL 224 (364)
Q Consensus 149 ~~dg~i~~~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~ 224 (364)
..+..+.+|+........ ..-..|.-.+++.++||+++++|++..||.|.+|.--. .........+.-|...|.++
T Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L 257 (792)
T KOG1963|consen 178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL 257 (792)
T ss_pred EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence 112234455554422100 11123556689999999999999999999999996433 22233456667788999999
Q ss_pred EEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee
Q 040533 225 AWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG 304 (364)
Q Consensus 225 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~ 304 (364)
+|+++|. .+.+|| .++.+.+|.+.+++...--...++|..+.++|++.+.+.... |+.|.+....+.....
T Consensus 258 ~fS~~G~-~LlSGG--~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~------DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 258 SFSSDGA-YLLSGG--REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLE------DNQIHLIKASDLEIKS 328 (792)
T ss_pred EEecCCc-eEeecc--cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEec------CceEEEEeccchhhhh
Confidence 9999995 555665 899999999999984444456789999999999998887754 9999999887665544
Q ss_pred eccc-----------cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 305 ELQH-----------QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 305 ~~~~-----------~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
.+.+ ..+-.+.++++|.-+.++-.+..|.|.+||+.+.+.+..+.
T Consensus 329 tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 329 TISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred hccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence 4332 13346788999977788888999999999999887765543
No 209
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=7.2e-16 Score=123.05 Aligned_cols=272 Identities=15% Similarity=0.200 Sum_probs=192.7
Q ss_pred cccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC--CcEEEEecCCcceeeeee
Q 040533 50 MMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA--SKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 50 ~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~ 126 (364)
.+.|+.+ .+++.+.....++|+.+.... ..........|..+-|+. .++|..+.+ ..+++++++.+..+..+.
T Consensus 10 ~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k--~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~ 85 (391)
T KOG2110|consen 10 FIGFNQDSTLLSVGSKDGYKIFSCSPFEK--CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIF 85 (391)
T ss_pred eeeeccceeEEEccCCCceeEEecCchHH--hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEe
Confidence 3446665 478888877888888765443 222222344566666764 456655543 359999999888887776
Q ss_pred cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee--eeecccCcEEEEEEcCCCCEEEEEe--CCCeEEEEeC
Q 040533 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS--RINAHTAEVCGLKWSNEGNLLASGG--DDNLVHVWDH 202 (364)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~ 202 (364)
...+|.++.+ +.+.|+++-++. |+|||+++-+.+.. ....+...+.++++++.+.+++.-+ ..|.|.+||+
T Consensus 86 -fpt~IL~Vrm---Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 86 -FPTSILAVRM---NRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred -cCCceEEEEE---ccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 5678999999 667777776654 99999987664222 2223556677777777777888754 4689999998
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe-EEEEECCCCeEEEEEecC---CCeEEEEEcCCcccee
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC-IKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKEIL 278 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~-i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~ 278 (364)
.+. +++..+..|.+.+-+++|+++| .++++++ ..|+ ||++.+.+|+.+..+.-+ ..|.+++|+|++++|+
T Consensus 161 ~nl---~~v~~I~aH~~~lAalafs~~G-~llATAS--eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 161 INL---QPVNTINAHKGPLAALAFSPDG-TLLATAS--EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred ccc---eeeeEEEecCCceeEEEECCCC-CEEEEec--cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence 765 4588888999999999999999 7888886 6666 799999999999998754 5689999999999998
Q ss_pred eeccCCccCCCCeEEEeeCCCCce---------------------------eeec----------cccccce-eEEeec-
Q 040533 279 SGHGFSSSGDGQKLCLWKYPHMTK---------------------------WGEL----------QHQTSRI-LELSQS- 319 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d~~~~~~---------------------------~~~~----------~~~~~~i-~~i~~~- 319 (364)
+.+ +.++|.+|.+..... +... +...+.. ..+.+.
T Consensus 235 ~sS------~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~ 308 (391)
T KOG2110|consen 235 ASS------NTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSS 308 (391)
T ss_pred Eec------CCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeec
Confidence 874 489999998753210 0000 0001111 122333
Q ss_pred -CCCCEEEEEeCCCcEEEEEeeCC
Q 040533 320 -PDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 320 -~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
+...++..++.||.++.|.+...
T Consensus 309 ~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 309 IQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred cCCCCEEEEEEcCCeEEEEEcCCC
Confidence 46678999999999999998763
No 210
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=1.4e-16 Score=140.49 Aligned_cols=239 Identities=13% Similarity=0.096 Sum_probs=164.3
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeC---CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ---DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (364)
.|.++|.+ +...+.+..+...+.+.+|+| +++.|+..+. +..|.+||+.++.. ..+..+.+.+...+|+|||+
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 78889875 444566667888999999999 8888877653 45899999987653 34445666778899999998
Q ss_pred EEE-EEeCCCe--EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC
Q 040533 187 LLA-SGGDDNL--VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA 263 (364)
Q Consensus 187 ~l~-~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 263 (364)
.|+ +.+.++. |++||+.... ...+..+........|+|+++.++.+.....+..|+++|+..++.........
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~----~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~ 334 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGT----TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG 334 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCc----eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC
Confidence 775 4455554 7777876543 34455556667789999999877766531123478888987766554444445
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC------CcEEEE
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD------ETLRFW 337 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~vw 337 (364)
.+....|+|+|+.++.... ...+..|.+||+..+.. ..+.. ...+..+.|+|||+.|+..+.+ ..+.++
T Consensus 335 ~~~~~~~SpdG~~ia~~~~---~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQ---GGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred cccCeEECCCCCEEEEEEc---CCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 5777899999999987542 11235788999865443 33322 2346788999999988775543 257777
Q ss_pred EeeCCCCCcceeccCCceeeeeeccC
Q 040533 338 EAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++..+.. ..+. ..+.+...+|||.
T Consensus 410 dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 410 DLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ECCCCce-EEcc-CCCCccCcccCCC
Confidence 7765544 3443 2445788899985
No 211
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=5.6e-17 Score=142.35 Aligned_cols=241 Identities=15% Similarity=0.153 Sum_probs=158.1
Q ss_pred CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC---CcEEEEEcccCcceeeeeecccCcEEEEEEcCCC
Q 040533 109 SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD---KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (364)
..|.++|.. +...+.+..+...+.+.+|+| +++.|+..+.+ ..|.+||+.++.. ..+....+.+...+|+|||
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDG 251 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCC
Confidence 357777764 454555566778899999999 88888776643 3599999987753 2233344556789999999
Q ss_pred CEEE-EEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEE--ECCCCeEEEEEecC
Q 040533 186 NLLA-SGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW--NVQKGTCIHSVDTK 262 (364)
Q Consensus 186 ~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~--d~~~~~~~~~~~~~ 262 (364)
+.|+ +.+.++...+|.++... .....+..+........|+|+|+.++.+.. .++...+| ++.+++........
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~--~~g~~~Iy~~~~~~g~~~~lt~~g 327 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADG--SGLRRLTQSSGIDTEPFFSPDGRSIYFTSD--RGGAPQIYRMPASGGAAQRVTFTG 327 (427)
T ss_pred CEEEEEEccCCCceEEEEECCC--CCcEECCCCCCCCcCeEEcCCCCEEEEEec--CCCCcEEEEEECCCCceEEEecCC
Confidence 8876 45677776666543211 124445545555677899999988777643 44555555 44555433322223
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCC-c--EEEEEe
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE-T--LRFWEA 339 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~--i~vw~~ 339 (364)
.......|+|+|++++..... +....|.+||+.+++... +... .......|+|||+.|+.++.++ . +.+.++
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~---~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRV---GGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CCcCceEECCCCCEEEEEEcc---CCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 334568999999998865421 112479999998876543 3222 2346789999999988877554 3 444455
Q ss_pred eCCCCCcceeccCCceeeeeeccC
Q 040533 340 FGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.+.....+..+.+.+...+|||.
T Consensus 403 -~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 403 -DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred -CCCceEEeecCCCCCCCCccCCC
Confidence 34445555566778899999995
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=5e-19 Score=144.77 Aligned_cols=266 Identities=17% Similarity=0.195 Sum_probs=206.9
Q ss_pred ecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 49 NMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 49 ~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
..++++.+ .++.++..|.|..+|..++++...+.+ ...|.++.|-.+.+++|++- ...++||| ..|..+..++
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v---~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk 207 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV---METVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLK 207 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeeh---hhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehh
Confidence 33455443 488889999999999999987544433 56799999999999999984 67899999 4577788887
Q ss_pred cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 040533 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206 (364)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 206 (364)
.| ..|..+.|.| ..-+|++++..|.+..-|+.+++. +..+..-.+.+..|+-+|-+..+-+|...|+|.+|.. .
T Consensus 208 ~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~Gkl-Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP---~ 281 (545)
T KOG1272|consen 208 RH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKL-VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP---N 281 (545)
T ss_pred hc-Cchhhhcccc-hhheeeecccCCceEEEeechhhh-hHHHHccCCccchhhcCCccceEEEcCCCceEEecCC---C
Confidence 55 5799999999 899999999999999999998875 5556666788899999998889999999999999994 4
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCcc
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
...++..+..|.++|.++++.++|.+++.+| .|..++|||+++...+.++....+...+++|..|.+.++-
T Consensus 282 skePLvKiLcH~g~V~siAv~~~G~YMaTtG---~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~------ 352 (545)
T KOG1272|consen 282 SKEPLVKILCHRGPVSSIAVDRGGRYMATTG---LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSY------ 352 (545)
T ss_pred CcchHHHHHhcCCCcceEEECCCCcEEeecc---cccceeEeeeccccccceeecCCCccccccccccceeeec------
Confidence 4566888888999999999999996555544 7999999999998888888777788889998877654433
Q ss_pred CCCCeEEEeeC-CCC--ceeeecccc--ccceeEEeecCCCCEEEEEeCCCcEEE
Q 040533 287 GDGQKLCLWKY-PHM--TKWGELQHQ--TSRILELSQSPDGLTVVSAAADETLRF 336 (364)
Q Consensus 287 ~~~~~i~i~d~-~~~--~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~v 336 (364)
...+.||.- -.+ ..-..+-.| .++|..+.|.|-...|-.|-..|.-.+
T Consensus 353 --G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 353 --GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred --CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 678899953 221 111112222 358999999997766666655554333
No 213
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=9.5e-17 Score=141.42 Aligned_cols=239 Identities=16% Similarity=0.116 Sum_probs=161.4
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC---CcEEEEecCCcceeeeeecCCCcEEEEEeecCCC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA---SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG 142 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (364)
.|.+||........+ ..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+...+.+|+| ++
T Consensus 185 ~l~i~D~~g~~~~~l---t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~Sp-DG 259 (433)
T PRK04922 185 ALQVADSDGYNPQTI---LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSP-DG 259 (433)
T ss_pred EEEEECCCCCCceEe---ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECC-CC
Confidence 689999876554333 3567789999999999999987643 469999998876543 333445556789999 78
Q ss_pred CEEE-EeeCCC--cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CCe--EEEEeCCCCCCCcceEEecc
Q 040533 143 HILT-SGSQDK--SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DNL--VHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 143 ~~l~-~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~~ 216 (364)
+.|+ +.+.+| .|++||+.++. ...+..+.......+|+|||+.|+.++. +|. |+++|+.... ...+..
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~----~~~lt~ 333 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS----AERLTF 333 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----eEEeec
Confidence 7664 555555 58999988665 3344455555567899999998887764 444 6666765432 222222
Q ss_pred cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 217 HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 217 ~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
+.......+|+|+|+.++++........|.+||+.+++.. .+..........|+|+|+.++..... ...+.|.+++
T Consensus 334 ~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~---~g~~~L~~~~ 409 (433)
T PRK04922 334 QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATRE---GGRGVLAAVS 409 (433)
T ss_pred CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEec---CCceEEEEEE
Confidence 3344557899999988777653111236999999887655 44333345677999999988765431 2245688888
Q ss_pred CCCCceeeeccccccceeEEeecC
Q 040533 297 YPHMTKWGELQHQTSRILELSQSP 320 (364)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~i~~~~ 320 (364)
.. +.....+..+.+.+...+|+|
T Consensus 410 ~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 410 TD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CC-CCceEEcccCCCCCCCCccCC
Confidence 85 445556655666777888876
No 214
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=4.3e-18 Score=137.84 Aligned_cols=197 Identities=18% Similarity=0.206 Sum_probs=152.1
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceE
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 212 (364)
.+++|++ ++..+++|+.||++++|+..+... ......|...|.++.|+|||+.|++-+.| ..+||+.+++.. +.
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t-~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~---~a 221 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLT-ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA---LA 221 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchh-hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch---hh
Confidence 6789999 999999999999999999776654 44456788999999999999999999999 899999887633 33
Q ss_pred Eec--ccccceeEEEEccCC---CcEEEeecCCCCCeEEEEECCCCeE------EEEEecCCCeEEEEEcCCccceeeec
Q 040533 213 RFR--DHRAAVKALAWCPYQ---FNVLASGGGTQDGCIKIWNVQKGTC------IHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 213 ~~~--~~~~~v~~~~~~~~~---~~~~~~~~g~~d~~i~i~d~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
... ..+.....+.|+.++ ..++++. ...-+.|+.||+...+. .+.+.....|++++.+++|++++.|+
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~-~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAAS-QFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEe-cCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence 222 223345566776654 2233332 22556777777654322 12223346799999999999999996
Q ss_pred cCCccCCCCeEEEeeCCCCceeeec-cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGEL-QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
. +|.|.|++..+.+.+.-. +.|...|+.+.|+||.+++++.+.|....+..+.-.
T Consensus 301 ~------dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 301 M------DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred c------CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 5 999999999998887765 469999999999999999999999999999988763
No 215
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.79 E-value=1.1e-14 Score=124.24 Aligned_cols=287 Identities=12% Similarity=0.168 Sum_probs=188.2
Q ss_pred CeEEEEEC--CCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec----CCcEEEEecCCc--c--eeeeeecCCCcEEE
Q 040533 65 LELYLWKQ--ENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM----ASKLQLWDAETS--K--LIRNLEGHDKRVAT 134 (364)
Q Consensus 65 ~~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iw~~~~~--~--~~~~~~~~~~~v~~ 134 (364)
+.|++|++ +++++...... ........++++|++++|.+..+ +|.|..|++... + .+............
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred CcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 68888887 56665544443 23556788999999999998876 468999988764 2 33334334455667
Q ss_pred EEeecCCCCEEEEee-CCCcEEEEEcccCcceeee--ee-----------cccCcEEEEEEcCCCCEEEEEe-CCCeEEE
Q 040533 135 ASWNHWNGHILTSGS-QDKSIINHDVRVSNNVTSR--IN-----------AHTAEVCGLKWSNEGNLLASGG-DDNLVHV 199 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~--~~-----------~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i 199 (364)
++++| ++++|+++. .+|.|.++++.....+... .. .......++.|+|+++++++.. ....|.+
T Consensus 92 i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~ 170 (345)
T PF10282_consen 92 IAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV 170 (345)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred EEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence 99999 788777775 5899999999875432222 11 1124568899999999888765 3357999
Q ss_pred EeCCCCCC-CcceEEec-ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECC--CCeE--EEEEec-------CCCeE
Q 040533 200 WDHSKMSS-SKCLHRFR-DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ--KGTC--IHSVDT-------KAQIC 266 (364)
Q Consensus 200 wd~~~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~~~~--~~~~~~-------~~~v~ 266 (364)
|++..... ......+. ......+.+.|+|+++.++++.. .++.|.++++. ++.. +..+.. .....
T Consensus 171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e--~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE--LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC--CCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 99876431 11112221 23455789999999988888865 88999999998 4432 233321 12578
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCC--Cc--eeeeccccccceeEEeecCCCCEEEEEe-CCCcEEEEEeeC
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH--MT--KWGELQHQTSRILELSQSPDGLTVVSAA-ADETLRFWEAFG 341 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~--~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~vw~~~~ 341 (364)
.+.++|+|++|+++.. ..+.|.+|++.. ++ .+..+.......+.++++|+|++|+++. .++.|.+|++..
T Consensus 249 ~i~ispdg~~lyvsnr-----~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 249 EIAISPDGRFLYVSNR-----GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEE-TTSSEEEEEEC-----TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred eEEEecCCCEEEEEec-----cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 8999999999998763 378999999932 22 2333333344578999999999998886 567899999864
Q ss_pred CCCCccee---ccCCceeeeee
Q 040533 342 PSGSGDFV---SHLDGLLSLKV 360 (364)
Q Consensus 342 ~~~~~~~~---~~~~~v~~~~~ 360 (364)
..-.-... ..-....||.|
T Consensus 324 ~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 324 DTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCcEEEecccccCCCCEEEeC
Confidence 33221111 22445666665
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=9e-16 Score=120.19 Aligned_cols=239 Identities=15% Similarity=0.196 Sum_probs=164.3
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCC--CcEEEEEeecCCCCEEEE-eeCC------CcEEEEEc
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD--KRVATASWNHWNGHILTS-GSQD------KSIINHDV 159 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~-~~~d------g~i~~~d~ 159 (364)
...+++|+.|..-+++|.++| .+||+.+--+.....+.+. -.+..+-| ..++|+. |+.+ ..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf---R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF---RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh---hhceEEEecCCCCCCCCCceEEEEec
Confidence 345699999999999998666 8999987644332222222 23333444 3344443 3332 36999994
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC-CcEEEeec
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ-FNVLASGG 238 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 238 (364)
. .+..+..+ ....+|.++.+.++ .+++.- ++.|++|..... .+.++.+.....+---++.+|.. ..+++.-
T Consensus 83 ~-k~~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n--~k~l~~~et~~NPkGlC~~~~~~~k~~LafP- 154 (346)
T KOG2111|consen 83 L-KERCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDN--PKLLHVIETRSNPKGLCSLCPTSNKSLLAFP- 154 (346)
T ss_pred c-cCcEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCC--hhheeeeecccCCCceEeecCCCCceEEEcC-
Confidence 3 33333333 46788999999876 566554 678999998632 23344443322221123344433 3455554
Q ss_pred CCCCCeEEEEECCCCeE---EEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc--ccce
Q 040533 239 GTQDGCIKIWNVQKGTC---IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ--TSRI 313 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i 313 (364)
|..-|.|+|-|+...+. .....|.+.|.+++.+.+|..+|+++. .+-.|+|||..+++++.+++.. ...|
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt-----kGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST-----KGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc-----CcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 45789999999987655 444457789999999999999999853 2445899999999999998743 3579
Q ss_pred eEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 314 LELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
.+++|||+..+||++|..|+|.||.++....
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 9999999999999999999999999987543
No 217
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=2.6e-18 Score=146.03 Aligned_cols=211 Identities=17% Similarity=0.255 Sum_probs=156.3
Q ss_pred CCCCcceeecccCCC---ccEEEEEeCCeEEEEECCCCce-----eeeeeecCCCCCceEEEEcC-CCCEEEEEecCCcE
Q 040533 41 NLRNDYYSNMMDWGR---NNILAIALGLELYLWKQENGEV-----QKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKL 111 (364)
Q Consensus 41 ~~~~~~~~~~~~~~~---~~~~~~~~~~~i~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 111 (364)
.+.+...+..+.|+| .++..++.||.|++|.+..+.. .....+..|.+.|+++.|+| -.+.|+++++|-+|
T Consensus 623 ~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti 702 (1012)
T KOG1445|consen 623 GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTI 702 (1012)
T ss_pred ccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcccee
Confidence 455666789999998 2466677889999999876533 22334568999999999999 45789999999999
Q ss_pred EEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc-CcEEEEEEcCCCCEEEE
Q 040533 112 QLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT-AEVCGLKWSNEGNLLAS 190 (364)
Q Consensus 112 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~ 190 (364)
++||+.+++....+.+|.+.|..++|+| +|+.+++.+.||+|++|+.++++..+..-.+.. ..-..+.|.-+|+++++
T Consensus 703 ~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv 781 (1012)
T KOG1445|consen 703 ELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIV 781 (1012)
T ss_pred eeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEE
Confidence 9999999999999999999999999999 999999999999999999988776554332221 23345778889998888
Q ss_pred EeCC----CeEEEEeCCCCCCCcceEEeccc-ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 191 GGDD----NLVHVWDHSKMSSSKCLHRFRDH-RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 191 ~~~d----~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
.+.| ..|.+||..+... .++.+..-. ...+.--.+.+|...++++|- -|..|.+|.+-...+
T Consensus 782 ~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lDvaps~LvP~YD~Ds~~lfltGK--GD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 782 VGFDKSSERQVQMYDAQTLDL-RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGK--GDRFVNMYEVIYESP 848 (1012)
T ss_pred ecccccchhhhhhhhhhhccC-CcceeeeecccCccccccccCCCceEEEecC--CCceEEEEEecCCCc
Confidence 8765 4688888665432 222221110 111112235667777888875 699999999865443
No 218
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=7.2e-17 Score=144.71 Aligned_cols=265 Identities=16% Similarity=0.252 Sum_probs=184.5
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC---CCcEEEEEee-cCCCCEEEEeeCCCcEEEEEcccC
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH---DKRVATASWN-HWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~~v~~~~~~-~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
......+.|+|-...++++...-.|+|||.+.++.+..+..+ ...|+.+.+- .++..++++|+.||.|+||+-...
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 345677889998899999987789999999999988777643 3568888874 446679999999999999975432
Q ss_pred c----ceeeeeec-------ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec-ccccceeEEEEccCC
Q 040533 163 N----NVTSRINA-------HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR-DHRAAVKALAWCPYQ 230 (364)
Q Consensus 163 ~----~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 230 (364)
. .++....+ ..+.-.-+.|.....+|++++.-..|+|||..... .+..+. +....|+++.-+-.+
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~---~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ---VVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccce---eEeecccCCCccceeecccccC
Confidence 1 11221111 11112446777766677777778899999987642 233322 344567777766555
Q ss_pred CcEEEeecCCCCCeEEEEECCCCeE---EEEEe-cCC--CeEEEEEcCCccc-eeeeccCCccCCCCeEEEeeCCCCcee
Q 040533 231 FNVLASGGGTQDGCIKIWNVQKGTC---IHSVD-TKA--QICGLEWNRHHKE-ILSGHGFSSSGDGQKLCLWKYPHMTKW 303 (364)
Q Consensus 231 ~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~-~~~--~v~~~~~~~~~~~-l~~~~~~~~~~~~~~i~i~d~~~~~~~ 303 (364)
..++++|. .||.|++||.+.... +.... +.. +|..+.+.+.|-- +++|. .+|.|++||++.....
T Consensus 1221 gn~i~AGf--aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs------~~G~I~~~DlR~~~~e 1292 (1387)
T KOG1517|consen 1221 GNIIAAGF--ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS------QDGDIQLLDLRMSSKE 1292 (1387)
T ss_pred CceEEEee--cCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec------cCCeEEEEecccCccc
Confidence 57888876 899999999986443 33333 223 3888888886654 77664 4999999999875332
Q ss_pred eec--cccc--c-ceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee-------ccCCceeeeeeccCC
Q 040533 304 GEL--QHQT--S-RILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV-------SHLDGLLSLKVSPIR 364 (364)
Q Consensus 304 ~~~--~~~~--~-~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-------~~~~~v~~~~~sp~~ 364 (364)
..+ ..|. + ..+++..+++...+|+|+. +.|+||++..... ..+. ...+.+.+++|+|-|
T Consensus 1293 ~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1293 TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCcceeeecchh
Confidence 222 2232 3 4899999999999999998 9999999876443 2222 224568999999954
No 219
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=3.5e-16 Score=137.39 Aligned_cols=245 Identities=13% Similarity=0.078 Sum_probs=158.9
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC---CcEEEEecCCcceeeeeecCCCcEEEEEeecCC
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA---SKLQLWDAETSKLIRNLEGHDKRVATASWNHWN 141 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 141 (364)
..|.++|........+ ..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+| +
T Consensus 176 ~~L~~~D~dG~~~~~l---~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP-D 250 (427)
T PRK02889 176 YQLQISDADGQNAQSA---LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP-D 250 (427)
T ss_pred cEEEEECCCCCCceEe---ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-C
Confidence 3688888755443322 2567789999999999999887643 359999999887543 333445667899999 8
Q ss_pred CCEEE-EeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCCCcceEEeccccc
Q 040533 142 GHILT-SGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DNLVHVWDHSKMSSSKCLHRFRDHRA 219 (364)
Q Consensus 142 ~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~ 219 (364)
++.|+ +.+.+|...+|.++........+..+........|+|||+.|+..+. ++...+|.+..... . ...+.....
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-~-~~~lt~~g~ 328 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-A-AQRVTFTGS 328 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC-c-eEEEecCCC
Confidence 87665 56778877776654332223444445555667899999998876654 45666665432211 1 222222223
Q ss_pred ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC
Q 040533 220 AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 220 ~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
.....+|+|+|+.++.+.....+..|.+||+.+++... +..........|+|+|+.++..... .....+.+.+. +
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~~---~g~~~l~~~~~-~ 403 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQQ---GGRSVLAAVSS-D 403 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEec---CCCEEEEEEEC-C
Confidence 34567899999877766531112379999998876543 3333345678999999998876531 11234666676 4
Q ss_pred CceeeeccccccceeEEeecCC
Q 040533 300 MTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 300 ~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
++....+..+.+.+...+|+|-
T Consensus 404 g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 404 GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCceEEeecCCCCCCCCccCCC
Confidence 5556666666677788888874
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=8.1e-19 Score=143.59 Aligned_cols=213 Identities=17% Similarity=0.258 Sum_probs=175.7
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCc
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSK 209 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 209 (364)
..-..+.++. +|..++.|+..|.|..+|..+... ...+ .-...|.++.|-.+.+++|++ ....++|||-. +.
T Consensus 130 FGPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L-~~Ei-~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~----Gt 201 (545)
T KOG1272|consen 130 FGPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKL-HFEI-NVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN----GT 201 (545)
T ss_pred cCCeeeeecC-CccEEEecCCccceeeeeccccee-eeee-ehhhhhhhhhhhcchHHHHhh-hhceEEEecCC----Cc
Confidence 3456788888 999999999999999999997763 3333 234568889998888888776 56789999943 34
Q ss_pred ceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCC
Q 040533 210 CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGD 288 (364)
Q Consensus 210 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~ 288 (364)
.++.++.+ ..|..+.|-|.. ++|++++ ..|.++.-|+.+|+.+..+... +.+..+.-+|-+..+-.|+.
T Consensus 202 ElHClk~~-~~v~rLeFLPyH-fLL~~~~--~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs------ 271 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH-FLLVAAS--EAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS------ 271 (545)
T ss_pred EEeehhhc-Cchhhhcccchh-heeeecc--cCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC------
Confidence 46666654 568899999987 7888876 8999999999999999888654 67888999999988888876
Q ss_pred CCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeec
Q 040533 289 GQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVS 361 (364)
Q Consensus 289 ~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s 361 (364)
.|+|.+|.....+++..+..|.++|.+|++.++|+|+||++.|..++|||++....+.++.. .-+...++||
T Consensus 272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~S 343 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLS 343 (545)
T ss_pred CceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999887766654 3344555554
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.77 E-value=6.5e-17 Score=134.92 Aligned_cols=260 Identities=16% Similarity=0.265 Sum_probs=178.0
Q ss_pred EEEEEeCCeEEEEECCCCce--eeeeeecCCCCCceEEEEc-----CCCCEEEEEecCCcEEEEecCCcceeeeee----
Q 040533 58 ILAIALGLELYLWKQENGEV--QKLLKVTGEDDFPTSISWS-----QDAKTLAVGYMASKLQLWDAETSKLIRNLE---- 126 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---- 126 (364)
.++......+++|+...+.. ..+....-.....+|-+|+ |.+--|.+|-..|.|.+.|....+..+.+.
T Consensus 137 ~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~ 216 (636)
T KOG2394|consen 137 RLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERL 216 (636)
T ss_pred EEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhccc
Confidence 56666667899998874321 1111111112334455553 456678888888999999976533322221
Q ss_pred cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 040533 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206 (364)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 206 (364)
..+..|+++.|-|.+...++.+-.+|.+.+||..... +...+ +....+++..+......+. .
T Consensus 217 i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-------~~t~p--~~~~~k~~~~f~i~t~ksk---------~ 278 (636)
T KOG2394|consen 217 INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-------GATAP--SYQALKDGDQFAILTSKSK---------K 278 (636)
T ss_pred ccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-------cCCCC--cccccCCCCeeEEeeeecc---------c
Confidence 1347899999999778889999999999999962111 11111 1112235555544332211 0
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCc
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSS 285 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~ 285 (364)
...++..+.--.+.|..++|+|||+++ ++.+ +||.++|||..+.+++..++. -+...+++|||||+|+++|
T Consensus 279 ~rNPv~~w~~~~g~in~f~FS~DG~~L-A~VS--qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtG----- 350 (636)
T KOG2394|consen 279 TRNPVARWHIGEGSINEFAFSPDGKYL-ATVS--QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTG----- 350 (636)
T ss_pred cCCccceeEeccccccceeEcCCCceE-EEEe--cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEec-----
Confidence 113355554456689999999999655 5544 899999999998877665543 2678999999999999998
Q ss_pred cCCCCeEEEeeCCCCceeeeccccccceeEEeecCC-----------------------------------C--------
Q 040533 286 SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPD-----------------------------------G-------- 322 (364)
Q Consensus 286 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-----------------------------------~-------- 322 (364)
++|.-|.||.+...+.+..-++|.+.|..++|.|- +
T Consensus 351 -GEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~ 429 (636)
T KOG2394|consen 351 -GEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNR 429 (636)
T ss_pred -CCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccccc
Confidence 55999999999999999999999999999999830 1
Q ss_pred -----CEEEEEeCCCcEEEEEeeCCCC
Q 040533 323 -----LTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 323 -----~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
-.+.+.+.|-.+.+||+.....
T Consensus 430 ~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 430 INSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred ccceEEEeecccccceEEEEecchhhc
Confidence 1366778899999999987544
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=1.4e-15 Score=134.31 Aligned_cols=240 Identities=16% Similarity=0.170 Sum_probs=162.8
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec---CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM---ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG 142 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (364)
.|+++|..+..... +..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+| ++
T Consensus 183 ~l~~~d~dg~~~~~---lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SP-DG 257 (435)
T PRK05137 183 RLAIMDQDGANVRY---LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSP-DG 257 (435)
T ss_pred EEEEECCCCCCcEE---EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECC-CC
Confidence 78899987665433 3367788999999999999988763 457999999887653 4455666778899999 78
Q ss_pred CEEE-EeeCCCc--EEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCCCCcceEEecc
Q 040533 143 HILT-SGSQDKS--IINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DN--LVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 143 ~~l~-~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~ 216 (364)
+.|+ +.+.++. |.+||+.++. ...+..+........|+|||+.|+..+. +| .|+++|+.... ...+..
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~ 331 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRISF 331 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEeec
Confidence 7654 5566665 7777877654 3445556666678999999998887764 33 68888865432 333333
Q ss_pred cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCC--CeEEE
Q 040533 217 HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDG--QKLCL 294 (364)
Q Consensus 217 ~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~--~~i~i 294 (364)
+...+....|+|+|+.++.+.....+..|.+||+..+. ...+.....+..+.|+|+|+.++...... +.. ..+++
T Consensus 332 ~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~~~--~~~~~~~L~~ 408 (435)
T PRK05137 332 GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQTP--GSGGAPKLYT 408 (435)
T ss_pred CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEccC--CCCCcceEEE
Confidence 34556778999999888776531123478899986554 34444444577889999999987654211 111 46888
Q ss_pred eeCCCCceeeeccccccceeEEeecCC
Q 040533 295 WKYPHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 295 ~d~~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
+|+..+.. ..+.. .+.+...+|+|-
T Consensus 409 ~dl~g~~~-~~l~~-~~~~~~p~Wsp~ 433 (435)
T PRK05137 409 VDLTGRNE-REVPT-PGDASDPAWSPL 433 (435)
T ss_pred EECCCCce-EEccC-CCCccCcccCCC
Confidence 88866544 34432 344667777763
No 223
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.76 E-value=1.2e-15 Score=120.04 Aligned_cols=272 Identities=17% Similarity=0.257 Sum_probs=185.8
Q ss_pred eecccCCCcc--EEEE-EeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCC-EEEEEecCCcEEEEecCCcceee
Q 040533 48 SNMMDWGRNN--ILAI-ALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
+.-+.|.-+. ++++ ..++.|.+|++...+... .+....+.+.+++|||||+ .|.+..-+-.|.+|.+.+.+...
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c--kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC--KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEE--EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 3456777653 4544 457899999998877643 3446678899999999996 45556678899999998766543
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCC------------------------------------CcEEEEEcccCcceee
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQD------------------------------------KSIINHDVRVSNNVTS 167 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d------------------------------------g~i~~~d~~~~~~~~~ 167 (364)
. +-.+..+..++|+| ++++.+.+++- ..+.+||---.-. +.
T Consensus 129 ~-~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-v~ 205 (447)
T KOG4497|consen 129 L-PHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-VY 205 (447)
T ss_pred e-cccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-ee
Confidence 2 32344567888988 88877766432 1234444221111 11
Q ss_pred eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------------CC--------------------------
Q 040533 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK---------------MS-------------------------- 206 (364)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------------~~-------------------------- 206 (364)
...-.-.+..++|+|.+++|++|+.|+.+++.+--+ ..
T Consensus 206 -aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~ 284 (447)
T KOG4497|consen 206 -AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDL 284 (447)
T ss_pred -eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcc
Confidence 111225688899999999999999999988765211 00
Q ss_pred ----------------CCcceEEec------ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCC
Q 040533 207 ----------------SSKCLHRFR------DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ 264 (364)
Q Consensus 207 ----------------~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~ 264 (364)
....++.++ .....+.-++|++|. .++++-....-+.+-+||+++.+....+....+
T Consensus 285 ~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~p 363 (447)
T KOG4497|consen 285 EAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKLHAVLIQKHP 363 (447)
T ss_pred ccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhhhhhhhhccc
Confidence 000011111 112246678999998 566665333457799999999888877878899
Q ss_pred eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCc
Q 040533 265 ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET 333 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 333 (364)
|....|+|....++...+ ...+++|.......+..- ...-.|..+.|..+|..++..+.|..
T Consensus 364 iraf~WdP~~prL~vctg------~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 364 IRAFEWDPGRPRLVVCTG------KSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eeEEEeCCCCceEEEEcC------CceEEEEcCCCceEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 999999999998888755 677999987664444432 33467999999999999999999864
No 224
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=4.4e-17 Score=132.06 Aligned_cols=197 Identities=19% Similarity=0.235 Sum_probs=146.6
Q ss_pred eEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee-
Q 040533 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI- 169 (364)
Q Consensus 91 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~- 169 (364)
.+++|+++|..|++|+.||.+|||+..+...+.....|...|.++.|+| ++++|++-+.| ..+||+.+++..+...-
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6899999999999999999999999888888888888999999999999 99999999999 99999999885432222
Q ss_pred ecccCcEEEEEEcCCC-----CEEEEEeCCCeEEEEeCCCCCCCcc--eEEecccccceeEEEEccCCCcEEEeecCCCC
Q 040533 170 NAHTAEVCGLKWSNEG-----NLLASGGDDNLVHVWDHSKMSSSKC--LHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 170 ~~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 242 (364)
...+.....+.|+.++ ..++.....+.|+.||+........ ..+.......|.+++.+++| .+++.|+ .|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-kf~AlGT--~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-KFLALGT--MD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-cEEEEec--cC
Confidence 2233445667787766 3333344556677777543222111 11111223469999999999 4666655 89
Q ss_pred CeEEEEECCCCeEEEEEe--cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 243 GCIKIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 243 ~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
|.|.+++..+.+.++-++ |..-|+.+.|+|+.++++.... +....+..+.
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs------~~~~~v~~l~ 354 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS------DNEAAVTKLA 354 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc------CCceeEEEEe
Confidence 999999999888877664 3467999999999999987533 6666665543
No 225
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=2.8e-15 Score=125.97 Aligned_cols=299 Identities=10% Similarity=0.121 Sum_probs=207.5
Q ss_pred eecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEE-----ec-----CCcEEEEec
Q 040533 48 SNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVG-----YM-----ASKLQLWDA 116 (364)
Q Consensus 48 ~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-----~~-----dg~i~iw~~ 116 (364)
++...++++ .+++.+.+..+.|++..++....... ...++++.|||-|.+|.+= .. .-.+.+|++
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~----~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVE----LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEec----cceeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence 566777775 58889999999999999886332222 2278999999999988761 11 235889999
Q ss_pred CCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC--CEEEE----
Q 040533 117 ETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG--NLLAS---- 190 (364)
Q Consensus 117 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~---- 190 (364)
+++.....+......-++..|++ ++.+. +--..+.+.+|++...+..... -|...|+.+.+||.+ ..+|+
T Consensus 113 et~~~~s~~q~k~Q~~W~~qfs~-dEsl~-arlv~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 113 ETGVQRSQIQKKMQNGWVPQFSI-DESLA-ARLVSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred ccceehhheehhhhcCccccccc-chhhh-hhhhcceEEEEecCCccceeee--eeccceeeEEecCCCCCceEEEEccC
Confidence 99655555543333336889987 55433 3334568999998875543333 467889999999963 34443
Q ss_pred -EeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---------CCeEEEEECCCCeEEEEEe
Q 040533 191 -GGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ---------DGCIKIWNVQKGTCIHSVD 260 (364)
Q Consensus 191 -~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---------d~~i~i~d~~~~~~~~~~~ 260 (364)
.+.-+.|+||..........+..-.-....-..+.|++-|..+|+..+..- +.++++.++....+.-.+.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 345678999987633222211111111223346789988877777654112 3478899988666777777
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC---CcEEEE
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD---ETLRFW 337 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~vw 337 (364)
..++|.++.|+|+++.+++..++. -..+.|||++ +.++..+ ..++-.++-|+|.|++|+.++-+ |.|-||
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfM----PAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFM----PAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecc----cceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 789999999999999999888765 8889999975 4555555 34566789999999999888754 789999
Q ss_pred EeeCCCCCcceeccCCceeeeeeccC
Q 040533 338 EAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|+.+.+.+..+.... -+-+.|+|.
T Consensus 342 Dv~n~K~i~~~~a~~--tt~~eW~Pd 365 (566)
T KOG2315|consen 342 DVPNRKLIAKFKAAN--TTVFEWSPD 365 (566)
T ss_pred eccchhhccccccCC--ceEEEEcCC
Confidence 999988887776433 344677774
No 226
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.75 E-value=3.5e-16 Score=121.29 Aligned_cols=157 Identities=16% Similarity=0.313 Sum_probs=114.8
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEE
Q 040533 177 CGLKWSNEGNLLASGGD----------DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIK 246 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 246 (364)
..+.|+|+|.+|++-.. -+...+|.++..........+. ..++|.+++|+|++..++++. |..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~-g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIY-GSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEE-ccCCcccE
Confidence 46889999987765443 1345566554433222222222 345799999999998776664 34678999
Q ss_pred EEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEE
Q 040533 247 IWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 247 i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
+||++ ++.+..+. ...+..+.|+|+|++++++.. +...|.|.+||.++.+.+.+.... .++.++|+|||++|+
T Consensus 87 lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~---~n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGF---GNLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEc---cCCCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEE
Confidence 99996 66666664 467789999999999998752 233578999999998888777533 478999999999999
Q ss_pred EEeC------CCcEEEEEeeCC
Q 040533 327 SAAA------DETLRFWEAFGP 342 (364)
Q Consensus 327 ~~~~------dg~i~vw~~~~~ 342 (364)
+++. |+.++||++...
T Consensus 160 ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEeccceeccccEEEEEecCe
Confidence 9864 788999998643
No 227
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=2.8e-15 Score=136.62 Aligned_cols=282 Identities=14% Similarity=0.195 Sum_probs=186.5
Q ss_pred eecccCCCc---cEEEEEeCCeEEEEECCCCc-----eeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc
Q 040533 48 SNMMDWGRN---NILAIALGLELYLWKQENGE-----VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS 119 (364)
Q Consensus 48 ~~~~~~~~~---~~~~~~~~~~i~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 119 (364)
+..++-+++ -+++++.||+|++|+...-. .....++......+.++...+.++.+|+|+.||.|++.+++..
T Consensus 1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred ccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 334444443 37788899999999976422 2223333335778999999999999999999999999998762
Q ss_pred --c-----eeeeeecC--CCcEEEEEeecCCCC-EEEEeeCCCcEEEEEcccCccee-eeeecccCcEEEEEEcCCCCEE
Q 040533 120 --K-----LIRNLEGH--DKRVATASWNHWNGH-ILTSGSQDKSIINHDVRVSNNVT-SRINAHTAEVCGLKWSNEGNLL 188 (364)
Q Consensus 120 --~-----~~~~~~~~--~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l 188 (364)
+ ..+....+ ..-|..-+|...... .++.+...+.|..||++...... .......+.|++++.+|.++++
T Consensus 1131 ~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wl 1210 (1431)
T KOG1240|consen 1131 NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWL 1210 (1431)
T ss_pred ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEE
Confidence 1 11111112 223344445443444 78888889999999998665321 1223345789999999999999
Q ss_pred EEEeCCCeEEEEeCCCCCCCcceEEec-ccccceeEEEEccCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecCCCe
Q 040533 189 ASGGDDNLVHVWDHSKMSSSKCLHRFR-DHRAAVKALAWCPYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQI 265 (364)
Q Consensus 189 ~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v 265 (364)
+.|+..|.+.+||+|-... +..+. ++..+++.+..+|-.+ ...++++.+..+.|.+|++.+|.+...+-....+
T Consensus 1211 viGts~G~l~lWDLRF~~~---i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~ 1287 (1431)
T KOG1240|consen 1211 VIGTSRGQLVLWDLRFRVP---ILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGA 1287 (1431)
T ss_pred EEecCCceEEEEEeecCce---eecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCC
Confidence 9999999999999986432 33332 3446788887777554 5555554236789999999999776666432111
Q ss_pred --------------------EEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCcee----------------------
Q 040533 266 --------------------CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW---------------------- 303 (364)
Q Consensus 266 --------------------~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~---------------------- 303 (364)
....+...+..+++| +.|..|+.||....+..
T Consensus 1288 p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltg------gsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~ 1361 (1431)
T KOG1240|consen 1288 PILSYALPSNDARKPDSLAGISCGVCEKNGFLLTG------GSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLST 1361 (1431)
T ss_pred cchhhhcccccCCCCCcccceeeecccCCceeeec------CCccceeeccCCCcccccccccCccccccccchhccccc
Confidence 112222333344444 55999999997432111
Q ss_pred --------------------------eec--------cccccceeEEeecCCC-CEEEEEeCCCcEEEEE
Q 040533 304 --------------------------GEL--------QHQTSRILELSQSPDG-LTVVSAAADETLRFWE 338 (364)
Q Consensus 304 --------------------------~~~--------~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~vw~ 338 (364)
... ..|..+|+++++.... .+|++++.||.|++|.
T Consensus 1362 i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1362 IPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 1356778888776543 5889999999999994
No 228
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=8.2e-17 Score=132.76 Aligned_cols=287 Identities=14% Similarity=0.233 Sum_probs=214.1
Q ss_pred eeecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC--CCEEEEEecCCcEEEEecCCcce-
Q 040533 47 YSNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSKL- 121 (364)
Q Consensus 47 ~~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~- 121 (364)
+++.+.|+.. .+++++.|..|.+||...++....+. .+|...|..-.|-|. .+-+++++.||.+++=.+.....
T Consensus 144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~ 222 (559)
T KOG1334|consen 144 CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV 222 (559)
T ss_pred ccceeeecccCceeeccCccceEEeehhhccCcccccc-cccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence 5677777663 35666778899999999887654443 489999998899884 45788899999999887653322
Q ss_pred --eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee--eeeecccC---cEEEEEEcCC-CCEEEEEeC
Q 040533 122 --IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT--SRINAHTA---EVCGLKWSNE-GNLLASGGD 193 (364)
Q Consensus 122 --~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~---~v~~~~~~~~-~~~l~~~~~ 193 (364)
...+..|.++|..++.-|.+...|.+++.|+.+.-+|++...... .....+.. ....++..|. ...+++++.
T Consensus 223 e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~ 302 (559)
T KOG1334|consen 223 ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGS 302 (559)
T ss_pred ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCCh
Confidence 234556999999999999888999999999999999998765321 12222333 5678888884 458999999
Q ss_pred CCeEEEEeCCCCCCC---cceEEecc------cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC--C---------
Q 040533 194 DNLVHVWDHSKMSSS---KCLHRFRD------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK--G--------- 253 (364)
Q Consensus 194 d~~i~iwd~~~~~~~---~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~--------- 253 (364)
|-.+++||.+..... ..+..+.. ..-.|++++|+.++..++++. .|-.|+++.-.- |
T Consensus 303 dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY---nDe~IYLF~~~~~~G~~p~~~s~~ 379 (559)
T KOG1334|consen 303 DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY---NDEDIYLFNKSMGDGSEPDPSSPR 379 (559)
T ss_pred hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee---cccceEEeccccccCCCCCCCcch
Confidence 999999998764322 11222222 234689999998888899976 488899995332 2
Q ss_pred -eEEEE-EecC---CCeEEEE-EcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEE
Q 040533 254 -TCIHS-VDTK---AQICGLE-WNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVS 327 (364)
Q Consensus 254 -~~~~~-~~~~---~~v~~~~-~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 327 (364)
..+.. ++++ ..|..+- |-|...|+++| ++-|.|.||+-.+++.+..+.+...-|.||.-+|--..||+
T Consensus 380 ~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSG------SDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 380 EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSG------SDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred hhccchhhcccccccccceeeeccCccceEEec------CccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc
Confidence 11122 3333 2366664 55778888887 55899999999999999999887779999999999999999
Q ss_pred EeCCCcEEEEEeeCCC
Q 040533 328 AAADETLRFWEAFGPS 343 (364)
Q Consensus 328 ~~~dg~i~vw~~~~~~ 343 (364)
.+-|.-|+||-..+.+
T Consensus 454 SGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 454 SGIDHDVKIWTPLTAE 469 (559)
T ss_pred cCCccceeeecCCccc
Confidence 9999999999875443
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.74 E-value=8.6e-16 Score=119.10 Aligned_cols=165 Identities=17% Similarity=0.293 Sum_probs=119.5
Q ss_pred EEEEeecCCCCEEEEeeC----------CCcEEEEEcccCcceeeeeec-ccCcEEEEEEcCCCCEEEEE--eCCCeEEE
Q 040533 133 ATASWNHWNGHILTSGSQ----------DKSIINHDVRVSNNVTSRINA-HTAEVCGLKWSNEGNLLASG--GDDNLVHV 199 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~----------dg~i~~~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~d~~i~i 199 (364)
..+.|+| .|++|+.-.. -|...+|.++........+.. ..++|.+++|+|+|+.|++. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4578888 7776655432 134566666544433444433 34579999999999987654 35679999
Q ss_pred EeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceee
Q 040533 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS 279 (364)
Q Consensus 200 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 279 (364)
||++ .+.+..+. ...+..+.|+|+|+.+++++.+...|.|.+||.++.+.+...++. .+..++|+|+|+++++
T Consensus 88 yd~~----~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK----GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc----ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEE
Confidence 9985 23455553 567789999999987777665456789999999999888887654 4789999999999999
Q ss_pred eccCCccCCCCeEEEeeCCCCceeeec
Q 040533 280 GHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
+........|+.++||+.. |+.+.+.
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEec
Confidence 8754444568999999984 5555443
No 230
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.73 E-value=2.5e-15 Score=136.90 Aligned_cols=257 Identities=13% Similarity=0.147 Sum_probs=177.1
Q ss_pred eeeecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEecCCc-------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCC
Q 040533 80 LLKVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDAETS-------KLIRNLEGHDKRVATASWNHWNGHILTSGSQD 151 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 151 (364)
+.++..|...+..++.++.. .++++|+.||+|++|+...- +...++.....++.++...+ +++.+|+++.|
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKD 1119 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCC
Confidence 44556888889899988755 89999999999999998642 12223333567889999888 99999999999
Q ss_pred CcEEEEEcccCcce------eeeeecc-cCcEE-EEEEcC-CCC-EEEEEeCCCeEEEEeCCCCCCCcceEEecccccce
Q 040533 152 KSIINHDVRVSNNV------TSRINAH-TAEVC-GLKWSN-EGN-LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAV 221 (364)
Q Consensus 152 g~i~~~d~~~~~~~------~~~~~~~-~~~v~-~~~~~~-~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 221 (364)
|.|.+.+++..... ......+ .+.+. .-+|.. .+. .++.+..-+.|..||++...... ..+.....+.|
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w-~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW-RLKNQLRHGLV 1198 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH-hhhcCccccce
Confidence 99999998752210 1111112 22333 333333 233 78888888999999998754322 12223345789
Q ss_pred eEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--CCeEEEEEcCCcc---ceeeeccCCccCCCCeEEEee
Q 040533 222 KALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--AQICGLEWNRHHK---EILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~---~l~~~~~~~~~~~~~~i~i~d 296 (364)
++++.+|.+. .+++|. ..|.+.+||++-+.++....++ .++..+..+|-.+ ..++++. +..+.|.+|+
T Consensus 1199 TSi~idp~~~-WlviGt--s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~----~~~nevs~wn 1271 (1431)
T KOG1240|consen 1199 TSIVIDPWCN-WLVIGT--SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS----SSNNEVSTWN 1271 (1431)
T ss_pred eEEEecCCce-EEEEec--CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc----cCCCceeeee
Confidence 9999999985 666655 8999999999999988887654 6677777776544 3333321 2488999999
Q ss_pred CCCCceeeecccc-------------------ccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCC
Q 040533 297 YPHMTKWGELQHQ-------------------TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 297 ~~~~~~~~~~~~~-------------------~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 345 (364)
+.++..-..+... .-......+...+.++.+|+.|+.|+.||...+...
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 9887655544322 001122233334568999999999999999887665
No 231
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.72 E-value=1.5e-15 Score=120.25 Aligned_cols=247 Identities=16% Similarity=0.268 Sum_probs=178.4
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc-----eeeeeecC------------CCcEEEEEeecC-CCCEEEEe
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-----LIRNLEGH------------DKRVATASWNHW-NGHILTSG 148 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~------------~~~v~~~~~~~~-~~~~l~~~ 148 (364)
.+-|.++.|..+|.+||+|..+|.|.+|.-.... ....++.| ...|..+.|.++ +...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 5668899999999999999999999999754322 22334334 246788899763 33577788
Q ss_pred eCCCcEEEEEcccCccee-----------------------------------eeeecccCcEEEEEEcCCCCEEEEEeC
Q 040533 149 SQDKSIINHDVRVSNNVT-----------------------------------SRINAHTAEVCGLKWSNEGNLLASGGD 193 (364)
Q Consensus 149 ~~dg~i~~~d~~~~~~~~-----------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~ 193 (364)
+.|.+|++|.+....... ....+|..-|++++++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 899999999886432100 11235777899999999998888774
Q ss_pred CCeEEEEeCCCCCCCcceEEeccc-----ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE----EEEec---
Q 040533 194 DNLVHVWDHSKMSSSKCLHRFRDH-----RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI----HSVDT--- 261 (364)
Q Consensus 194 d~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~----~~~~~--- 261 (364)
|=.|.+|++.-....-.+..++.+ ..-|++..|+|..-.+++-.+ ..|+|++.|++....- ..++.
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS--SKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS--SKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec--CCCcEEEeechhhhhhcchhhhhccccC
Confidence 778999998765433333334433 345889999998877777765 7999999999853211 11110
Q ss_pred ----------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC-CCCceeeeccccc------------cce---eE
Q 040533 262 ----------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY-PHMTKWGELQHQT------------SRI---LE 315 (364)
Q Consensus 262 ----------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~-~~~~~~~~~~~~~------------~~i---~~ 315 (364)
-..|..+.|++.|+|+++-. --+|++||+ ...+++.+++-|. ..| ..
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRD-------yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRD-------YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEec-------cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 13578899999999999863 478999999 4566777766553 122 46
Q ss_pred EeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 316 LSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 316 i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
++|+.++.+++||+..+.+++++...+.
T Consensus 335 c~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 335 CSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEEcCCcceEecccccceEEEecCCCCc
Confidence 7899999999999999999999965543
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=2.3e-15 Score=121.08 Aligned_cols=260 Identities=12% Similarity=0.131 Sum_probs=185.3
Q ss_pred CCCCCceEEEEcCCCC--EEEEEecCCcEEEEecCCcceeeee------ecCCCcEEEEEeecCCCCEEEEeeCCCcEEE
Q 040533 85 GEDDFPTSISWSQDAK--TLAVGYMASKLQLWDAETSKLIRNL------EGHDKRVATASWNHWNGHILTSGSQDKSIIN 156 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 156 (364)
.....|..++|.-+++ .+...+.+-.+..+.+........+ .....+|..+.. ....|++|-.+|.+.+
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADGTLITCVSSGNLQV 129 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCCEEEEEecCCcEEE
Confidence 4456788888886654 4444446667777777666554432 334566766666 4556778889999999
Q ss_pred EEcccCc---ceeeeeecccCcEEEEEEcCC-CCEEEEEeCC--CeEEEEeCCCCCCCcceEEecc---------cccce
Q 040533 157 HDVRVSN---NVTSRINAHTAEVCGLKWSNE-GNLLASGGDD--NLVHVWDHSKMSSSKCLHRFRD---------HRAAV 221 (364)
Q Consensus 157 ~d~~~~~---~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~---------~~~~v 221 (364)
|..+.+. .....+..+ ..+..+.-++. ...+++|+.. ..+.+||+.... .+..-+. -+-++
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~---qiw~aKNvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK---QIWSAKNVPNDRLGLRVPVWI 205 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccce---eeeeccCCCCccccceeeeee
Confidence 9987443 112223223 44566666663 3466779888 889999987642 1222111 12356
Q ss_pred eEEEEccC-CCcEEEeecCCCCCeEEEEECCCC-eEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 222 KALAWCPY-QFNVLASGGGTQDGCIKIWNVQKG-TCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 222 ~~~~~~~~-~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
+++.|-+. ..+.++++. .-+.+++||.+.+ +++.++.. ..+++++...|.++++++|.. .+.+..||.+
T Consensus 206 tdi~Fl~g~~~~~fat~T--~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~------~g~l~~FD~r 277 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATIT--RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT------KGQLAKFDLR 277 (412)
T ss_pred ccceecCCCCCceEEEEe--cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc------cchhheeccc
Confidence 78888775 136677765 7899999999875 45677764 478999999999999999965 8999999999
Q ss_pred CCceeee-ccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeee
Q 040533 299 HMTKWGE-LQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKV 360 (364)
Q Consensus 299 ~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~ 360 (364)
.++.+.. +++-.+.|++|..+|.+++|++++-|..|||+|+.+.+.+....- ...++++-+
T Consensus 278 ~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~ 339 (412)
T KOG3881|consen 278 GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILL 339 (412)
T ss_pred CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEe
Confidence 9998877 888899999999999999999999999999999999776654432 233444444
No 233
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1.8e-14 Score=127.36 Aligned_cols=240 Identities=16% Similarity=0.119 Sum_probs=156.7
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC---CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD---KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (364)
.|.++|.+.+. .+.+..+...+....|+| +++.|+..+.+ ..|.+||+.++.. ..+....+.+....|+|+|+
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCC
Confidence 47788876544 455555777899999999 88888766533 3688999987653 22333344456789999999
Q ss_pred EEEE-EeCCC--eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC
Q 040533 187 LLAS-GGDDN--LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA 263 (364)
Q Consensus 187 ~l~~-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 263 (364)
.|+. ...++ .|+++|+.... ...+..+........|+|+++.++.+........|.++|+.+++..+......
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~ 331 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQ----LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN 331 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCC----eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence 8774 44444 68888987643 33444455556678999999887776531113468888888776543332233
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC-C--cEEEEEee
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD-E--TLRFWEAF 340 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~vw~~~ 340 (364)
......|+|+|+.++..... .....|.++|+.+++... +.. ........|+|||+.++..+.+ | .|.++++.
T Consensus 332 ~~~~~~~Spdg~~i~~~~~~---~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 332 YNARPRLSADGKTLVMVHRQ---DGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CccceEECCCCCEEEEEEcc---CCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 34567899999998876421 113368899998876433 221 1222356899999988776644 3 46666664
Q ss_pred CCCCCcceeccCCceeeeeeccC
Q 040533 341 GPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 341 ~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
. .....+..+.+.+...+|||.
T Consensus 407 g-~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 407 G-RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred C-CceEECcCCCCCcCCCccCCC
Confidence 3 333345555667888999985
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.71 E-value=3.6e-14 Score=121.00 Aligned_cols=249 Identities=12% Similarity=0.121 Sum_probs=160.6
Q ss_pred cccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcceeeeee
Q 040533 50 MMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 50 ~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~ 126 (364)
.+.+++++ +++.+.|+.|.++|+.+++....... .....++++|+||++++++. ..+.+.++|.++.+.++.+.
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec---CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 34566643 66667799999999999997666543 34578999999999998776 68999999999999988876
Q ss_pred cC-------CCcEEEEEeecCCCC-EEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEE-eCCCeE
Q 040533 127 GH-------DKRVATASWNHWNGH-ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASG-GDDNLV 197 (364)
Q Consensus 127 ~~-------~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i 197 (364)
.. ..++..+..+| ... ++++.-+.+.|.+.|......+...............|+|++++++.+ ..+..|
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp --EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred cccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccccee
Confidence 42 34678888888 666 444445558888888776654443343445667889999999987665 445577
Q ss_pred EEEeCCCCCC----------------------------------------------------CcceEEecccccceeEEE
Q 040533 198 HVWDHSKMSS----------------------------------------------------SKCLHRFRDHRAAVKALA 225 (364)
Q Consensus 198 ~iwd~~~~~~----------------------------------------------------~~~~~~~~~~~~~v~~~~ 225 (364)
.++|..+... .+.+.++.....+ .-+.
T Consensus 197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~ 275 (369)
T PF02239_consen 197 AVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIK 275 (369)
T ss_dssp EEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE
T ss_pred EEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceee
Confidence 7777654211 1112222222222 4566
Q ss_pred EccCCCcEEEe-ecCCCCCeEEEEECCCCeEEEEEecC--CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 226 WCPYQFNVLAS-GGGTQDGCIKIWNVQKGTCIHSVDTK--AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 226 ~~~~~~~~~~~-~~g~~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
.+|+++++.+. ..+...++|.++|.++.+.+..+... ..+..+.|+++|+++..+.. ..++.|.+||..+.+.
T Consensus 276 thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~----~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 276 THPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVW----DGNGAIVVYDAKTLKE 351 (369)
T ss_dssp --TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE------TTEEEEEETTTTEE
T ss_pred cCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEe----cCCCEEEEEECCCcEE
Confidence 78999888886 11125789999999999888887644 34999999999999887754 2255899999999999
Q ss_pred eeecc
Q 040533 303 WGELQ 307 (364)
Q Consensus 303 ~~~~~ 307 (364)
+.++.
T Consensus 352 ~~~i~ 356 (369)
T PF02239_consen 352 KKRIP 356 (369)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88876
No 235
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.5e-16 Score=131.94 Aligned_cols=209 Identities=19% Similarity=0.304 Sum_probs=152.5
Q ss_pred CcceeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC--CCCEEEEEecCCcEEEEecCCc
Q 040533 44 NDYYSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ--DAKTLAVGYMASKLQLWDAETS 119 (364)
Q Consensus 44 ~~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~ 119 (364)
..-++++++|+.++ +++++.|-.+.|||....+....+.. +|...|.++.|-| +.+++++|..|..|+++|+...
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST-GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec-ccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 45579999999875 44555677999999987776655543 9999999999999 4568899999999999999742
Q ss_pred ----------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee---------eeecccCcEEEEE
Q 040533 120 ----------KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS---------RINAHTAEVCGLK 180 (364)
Q Consensus 120 ----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~---------~~~~~~~~v~~~~ 180 (364)
+....+..|...|..++-.|...+.+.++++||+++-+|++....... .+...--...++.
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lt 207 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLT 207 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeee
Confidence 334556678999999999995559999999999999999986432111 1111223467899
Q ss_pred EcC-CCCEEEEEeCCCeEEEEeCCCCCC-----C----------cceEEec-ccc-----------cceeEEEEccCCCc
Q 040533 181 WSN-EGNLLASGGDDNLVHVWDHSKMSS-----S----------KCLHRFR-DHR-----------AAVKALAWCPYQFN 232 (364)
Q Consensus 181 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~-----~----------~~~~~~~-~~~-----------~~v~~~~~~~~~~~ 232 (364)
.+| +..+|++|+.|-..++||.+.... + .++..+. +|. ..++-+.|+|+|..
T Consensus 208 isp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtE 287 (758)
T KOG1310|consen 208 ISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTE 287 (758)
T ss_pred ecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcE
Confidence 999 456999999999999999543210 0 0122211 111 12466789999999
Q ss_pred EEEeecCCCCCeEEEEECCCCeEE
Q 040533 233 VLASGGGTQDGCIKIWNVQKGTCI 256 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~~~~~ 256 (364)
+|++-+ ...|+++|+..++..
T Consensus 288 lLvs~~---gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 288 LLVSWG---GEHVYLFDVNEDKSP 308 (758)
T ss_pred EEEeeC---CeEEEEEeecCCCCc
Confidence 999875 467999999776543
No 236
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=1.6e-13 Score=107.77 Aligned_cols=273 Identities=13% Similarity=0.183 Sum_probs=179.2
Q ss_pred ccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEE-EecC------CcEEEEecCCccee
Q 040533 51 MDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAV-GYMA------SKLQLWDAETSKLI 122 (364)
Q Consensus 51 ~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d------g~i~iw~~~~~~~~ 122 (364)
++|+-+ .-++++.+...+||+.+--+...........-.+..+-| ..++||. |+.+ .+|.|||=...+++
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k~~~i 88 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLKERCI 88 (346)
T ss_pred EEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecccCcEE
Confidence 677765 478888899999999875332111211111122333333 3455554 3322 36999997677777
Q ss_pred eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec--ccCcEEEEEEcCCCCEEEEE-eCCCeEEE
Q 040533 123 RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA--HTAEVCGLKWSNEGNLLASG-GDDNLVHV 199 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~~d~~i~i 199 (364)
.++. ...+|.++.+. .+.|++.- .+.|.+|.....-+....+.. ......+++-+.+..+||.- -.-|.|.|
T Consensus 89 ~el~-f~~~I~~V~l~---r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi 163 (346)
T KOG2111|consen 89 IELS-FNSEIKAVKLR---RDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQI 163 (346)
T ss_pred EEEE-eccceeeEEEc---CCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEE
Confidence 7776 67889999994 45566554 468999998754433333322 22334444433344455553 35689999
Q ss_pred EeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe-EEEEECCCCeEEEEEecC---CCeEEEEEcCCcc
Q 040533 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC-IKIWNVQKGTCIHSVDTK---AQICGLEWNRHHK 275 (364)
Q Consensus 200 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~-i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~ 275 (364)
-|+...... ....+.+|.+.|.+++.+-+| .++|+++ ..|+ |||||..+|+.+..+.-+ ..+.+++|||+..
T Consensus 164 ~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~G-t~vATaS--tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 164 VDLASTKPN-APSIINAHDSDIACVALNLQG-TLVATAS--TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEhhhcCcC-CceEEEcccCceeEEEEcCCc-cEEEEec--cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 998765432 346677899999999999999 7888876 6666 799999999999998643 6799999999999
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeee------------------------ccccccceeEEeecCCCCEEEEEeCC
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGE------------------------LQHQTSRILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~------------------------~~~~~~~i~~i~~~~~~~~l~~~~~d 331 (364)
+|++. ++.|++.|+.++....-.. ++-..+...-++|-.+.+.++..+.|
T Consensus 240 ~Lavs------SdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~D 313 (346)
T KOG2111|consen 240 WLAVS------SDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICAD 313 (346)
T ss_pred EEEEE------cCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeC
Confidence 99988 5599999998865321111 11112334445666554566666777
Q ss_pred CcEEEEEee
Q 040533 332 ETLRFWEAF 340 (364)
Q Consensus 332 g~i~vw~~~ 340 (364)
|.-+-+.+.
T Consensus 314 gsy~k~~f~ 322 (346)
T KOG2111|consen 314 GSYYKFKFD 322 (346)
T ss_pred CcEEEEEec
Confidence 776544443
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=1.8e-15 Score=121.67 Aligned_cols=219 Identities=14% Similarity=0.207 Sum_probs=167.7
Q ss_pred ecccCCCccEEEEEeCCeEEEEECCCCc--eeeeeeecCCCCCceEEEEcCCCC-EEEEEecC--CcEEEEecCCcceee
Q 040533 49 NMMDWGRNNILAIALGLELYLWKQENGE--VQKLLKVTGEDDFPTSISWSQDAK-TLAVGYMA--SKLQLWDAETSKLIR 123 (364)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d--g~i~iw~~~~~~~~~ 123 (364)
..++...+.++++-.+|.+.+|..+.+. -.++..+.. ...+..+.-++... ++|+|+.. ..+.|||++..+.+.
T Consensus 109 ~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw 187 (412)
T KOG3881|consen 109 KGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIW 187 (412)
T ss_pred cchhhcCCEEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeee
Confidence 3344444568888889999999988544 122222222 24566666666444 56668888 789999999886655
Q ss_pred eeecC---------CCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEe
Q 040533 124 NLEGH---------DKRVATASWNHWN--GHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 124 ~~~~~---------~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 192 (364)
.-+.- .-.++++.|.+ . ...|++++.-+.+++||.+.++.++..+...+.+++++...|+++++++|.
T Consensus 188 ~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn 266 (412)
T KOG3881|consen 188 SAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN 266 (412)
T ss_pred eccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec
Confidence 43321 12456788887 5 789999999999999999988888888888899999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcC
Q 040533 193 DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNR 272 (364)
Q Consensus 193 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~ 272 (364)
..|.+..||++.+.. ....+.+..+.|+++..+|.+ .+++++| -|..|+|+|+++.+++......+.++.+.+.+
T Consensus 267 ~~g~l~~FD~r~~kl--~g~~~kg~tGsirsih~hp~~-~~las~G--LDRyvRIhD~ktrkll~kvYvKs~lt~il~~~ 341 (412)
T KOG3881|consen 267 TKGQLAKFDLRGGKL--LGCGLKGITGSIRSIHCHPTH-PVLASCG--LDRYVRIHDIKTRKLLHKVYVKSRLTFILLRD 341 (412)
T ss_pred ccchhheecccCcee--eccccCCccCCcceEEEcCCC-ceEEeec--cceeEEEeecccchhhhhhhhhccccEEEecC
Confidence 999999999987643 223367788999999999987 4666666 89999999999988887777777788887765
Q ss_pred Cc
Q 040533 273 HH 274 (364)
Q Consensus 273 ~~ 274 (364)
+-
T Consensus 342 ~~ 343 (412)
T KOG3881|consen 342 DV 343 (412)
T ss_pred Cc
Confidence 43
No 238
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=2.7e-14 Score=125.84 Aligned_cols=240 Identities=15% Similarity=0.122 Sum_probs=153.9
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeC-CC--cEEEEEcccCcceeeeeecccCcEEEEEEcCCCC
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ-DK--SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (364)
.|.++|..... .+.+..+...+.+..|+| +++.|+..+. ++ .|.++|+.+++. ..+....+.....+|+|||+
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCC
Confidence 57777865443 344555677899999999 8888776653 33 588889876653 22222233345789999999
Q ss_pred EEEE-EeCCCe--EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC
Q 040533 187 LLAS-GGDDNL--VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA 263 (364)
Q Consensus 187 ~l~~-~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 263 (364)
.|+. .+.++. |+++|+.... ...+..+.......+|+|+++.++.+........|.++|+.+++.........
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~ 350 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKA----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE 350 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC
Confidence 7765 455664 7777876543 34444455556788999999888776541123457777887776544322223
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC-Cc--EEEEEee
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD-ET--LRFWEAF 340 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g~--i~vw~~~ 340 (364)
......|+|+|++++..... .....|.++|+.+++... +... .......|+|||+.|+..+.+ |. +++++.
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~---~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~- 424 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRT---NGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI- 424 (448)
T ss_pred CCcCeeECCCCCEEEEEEec---CCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 34567999999998775421 112357778887776432 2222 122345899999988766543 33 667776
Q ss_pred CCCCCcceeccCCceeeeeeccC
Q 040533 341 GPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 341 ~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++.....+..+.+.+...+|||.
T Consensus 425 ~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 425 DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCCceEECcCCCCCcCCCccCCC
Confidence 44455556666677889999995
No 239
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=3.6e-14 Score=124.13 Aligned_cols=249 Identities=11% Similarity=0.083 Sum_probs=154.7
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEE---EEecCC--cEEEEecCCcceeeeeecCCCcEEEEEeec
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLA---VGYMAS--KLQLWDAETSKLIRNLEGHDKRVATASWNH 139 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 139 (364)
..|.+.|...+...++. .......+-+|||||+.++ +...+| .|.+.++.+++..+ +....+.....+|+|
T Consensus 165 ~~l~~~d~dG~~~~~lt---~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSP 240 (428)
T PRK01029 165 GELWSVDYDGQNLRPLT---QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSP 240 (428)
T ss_pred ceEEEEcCCCCCceEcc---cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECC
Confidence 37888888777654433 3345567889999997532 333343 58888888776433 333445556789999
Q ss_pred CCCCEEEEeeC-CC----cEEEEEcccC--cceeeeeecccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCCcce
Q 040533 140 WNGHILTSGSQ-DK----SIINHDVRVS--NNVTSRINAHTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSSSKCL 211 (364)
Q Consensus 140 ~~~~~l~~~~~-dg----~i~~~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~ 211 (364)
+++.|+..+. +| .+..|++..+ .................+|+|||+.|+..+ .+|...+|.+.........
T Consensus 241 -DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 241 -RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred -CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 8877776542 23 3444676542 222222222223446789999999877665 4565555543211111123
Q ss_pred EEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCe
Q 040533 212 HRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQK 291 (364)
Q Consensus 212 ~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 291 (364)
..+..+...+....|+|+|+.++.+........|.+||+.+++..........+....|+|+|+.++.... ......
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~---~~g~~~ 396 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAG---NSNESE 396 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEEC---CCCCce
Confidence 33444445677899999998777765411134799999998876544434446778999999998875432 123567
Q ss_pred EEEeeCCCCceeeeccccccceeEEeecCCC
Q 040533 292 LCLWKYPHMTKWGELQHQTSRILELSQSPDG 322 (364)
Q Consensus 292 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 322 (364)
|+++|+..++..... ...+.+...+|+|-.
T Consensus 397 L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 397 LYLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 999999877654433 334556778888753
No 240
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.70 E-value=2.1e-15 Score=126.06 Aligned_cols=243 Identities=13% Similarity=0.115 Sum_probs=162.0
Q ss_pred ceEEEEcCCCCEEEEEecCCcEEEEecCCcceee----eeecCCCcEEEEEe-----ecCCCCEEEEeeCCCcEEEEEcc
Q 040533 90 PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR----NLEGHDKRVATASW-----NHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 90 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~v~~~~~-----~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
+....++-.|++|+..- ...+++|+...+..+. ...-......|-+| .| .+--++.|-.-|.|.+.|..
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~-~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATP-KGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCC-CCcceEEeeccCceEEecch
Confidence 34444555677776653 3468888877432211 11111112223333 23 55567788888999998876
Q ss_pred cCcceeeee----ecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 161 VSNNVTSRI----NAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 161 ~~~~~~~~~----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
... ..+.+ .-.+..++++.|-| +...++++-.+|.+++||...... ...+ +-...+++.. ++
T Consensus 204 ~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~---------~t~p--~~~~~k~~~~-f~ 270 (636)
T KOG2394|consen 204 NFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG---------ATAP--SYQALKDGDQ-FA 270 (636)
T ss_pred hhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc---------CCCC--cccccCCCCe-eE
Confidence 532 11111 12347899999999 445777788999999998522100 0010 1111222222 11
Q ss_pred eecCCCCCeEEEEEC-CCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccce
Q 040533 236 SGGGTQDGCIKIWNV-QKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI 313 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 313 (364)
.. .|-- .+..++..+. ..+.|..++|+|||++|++... ||.++|||..+.+.+..++..-+..
T Consensus 271 i~---------t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq------DGfLRvF~fdt~eLlg~mkSYFGGL 335 (636)
T KOG2394|consen 271 IL---------TSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ------DGFLRIFDFDTQELLGVMKSYFGGL 335 (636)
T ss_pred Ee---------eeeccccCCccceeEeccccccceeEcCCCceEEEEec------CceEEEeeccHHHHHHHHHhhccce
Confidence 11 1110 1113333322 3458999999999999999854 9999999999999888888777889
Q ss_pred eEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 314 LELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
.|++|||||+||++|++|-.|.||.+..++.+..-.+|.+.|..|+|.|
T Consensus 336 LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 336 LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999999999999987
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.69 E-value=4.5e-14 Score=124.80 Aligned_cols=238 Identities=14% Similarity=0.137 Sum_probs=155.7
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC---CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD---KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (364)
.|.++|.... ..+.+..+...+...+|+| +++.|+.+..+ ..|++||+.++.. ..+..+...+.+++|+|+++
T Consensus 171 ~l~~~d~~g~-~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 171 ELQVADYDGA-NPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred eEEEEcCCCC-CCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 5888887543 3455555777789999999 89988877644 4799999987653 23334556677799999998
Q ss_pred EEEEE-eCCC--eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC
Q 040533 187 LLASG-GDDN--LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA 263 (364)
Q Consensus 187 ~l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 263 (364)
.|+.. +.++ .|++||+.... ...+..+........|+|+++.++.+........|.++|+.+++.........
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~ 322 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQ----LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG 322 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCC----EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence 77644 4444 58888877543 33344444455677899999877766531112368888988776544433455
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCC---cEEEEEee
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE---TLRFWEAF 340 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---~i~vw~~~ 340 (364)
....+.|+|+|++++.+... .....|.+||+.++... .+... .......|+|+|++|+..+.++ .+++.+..
T Consensus 323 ~~~~~~~spdg~~i~~~~~~---~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHRE---GGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CccCeEECCCCCEEEEEEcc---CCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 67788999999998877531 11237899998875432 23222 2235678999999888877654 34454433
Q ss_pred CCCCCcceeccCCceeeeeec
Q 040533 341 GPSGSGDFVSHLDGLLSLKVS 361 (364)
Q Consensus 341 ~~~~~~~~~~~~~~v~~~~~s 361 (364)
+.....+..+.+.+..++||
T Consensus 398 -g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 398 -GRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred -CceeeECCCCCCCcCCCCCC
Confidence 33344444445566777664
No 242
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.7e-12 Score=104.26 Aligned_cols=289 Identities=10% Similarity=0.155 Sum_probs=191.4
Q ss_pred CCeEEEEECCC--CceeeeeeecCCCCCceEEEEcCCCCEEEEEecC---CcEEEEecCC--cceee--eeecCCCcEEE
Q 040533 64 GLELYLWKQEN--GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA---SKLQLWDAET--SKLIR--NLEGHDKRVAT 134 (364)
Q Consensus 64 ~~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~--~~~~~--~~~~~~~~v~~ 134 (364)
+..|++|++.+ ++.. ..++-.+.+.++-++|+|+++.|.++-.+ |.|.-|.++. |++.. .......+-..
T Consensus 15 s~gI~v~~ld~~~g~l~-~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELS-LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccc-hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 57899998873 3332 23333667889999999999999887654 6788887764 44322 22222334478
Q ss_pred EEeecCCCCEEEEee-CCCcEEEEEcccCcceee--eeecccCc----------EEEEEEcCCCCEEEEEeC-CCeEEEE
Q 040533 135 ASWNHWNGHILTSGS-QDKSIINHDVRVSNNVTS--RINAHTAE----------VCGLKWSNEGNLLASGGD-DNLVHVW 200 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~--~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~i~iw 200 (364)
+++++ ++++++++. ..|.|.++-++....+.. ....|.+. +....+.|++++|++..- -..|.+|
T Consensus 94 vsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 94 VSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 89999 888888776 457899998866432221 22234444 788899999999988762 2469999
Q ss_pred eCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-eE---EEEE-------ecCCCeEEEE
Q 040533 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG-TC---IHSV-------DTKAQICGLE 269 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~---~~~~-------~~~~~v~~~~ 269 (364)
++..+.........-......+.|.|+|+++...+..- .+++|.+|..... .. ++.+ .......++.
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E--L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE--LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEec--cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 98855432211111233456789999999988777765 8999999998773 22 2222 2235678899
Q ss_pred EcCCccceeeeccCCccCCCCeEEEeeCCCC-ceeee---ccccccceeEEeecCCCCEEEEEeCC-CcEEEEEeeCCCC
Q 040533 270 WNRHHKEILSGHGFSSSGDGQKLCLWKYPHM-TKWGE---LQHQTSRILELSQSPDGLTVVSAAAD-ETLRFWEAFGPSG 344 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~-~~~~~---~~~~~~~i~~i~~~~~~~~l~~~~~d-g~i~vw~~~~~~~ 344 (364)
++++|++|+++... ...|.+|.+... ..+.. ...+....+...+++.|++|+++..+ ..|.+|..+...-
T Consensus 251 is~dGrFLYasNRg-----~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 251 ISPDGRFLYASNRG-----HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred ECCCCCEEEEecCC-----CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence 99999999998642 447888877543 22222 22344457899999999999998865 4588988775443
Q ss_pred Cccee---ccCCceeeeeec
Q 040533 345 SGDFV---SHLDGLLSLKVS 361 (364)
Q Consensus 345 ~~~~~---~~~~~v~~~~~s 361 (364)
.-... .......||.|.
T Consensus 326 ~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 326 RLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred eEEecccccCCCCcEEEEEc
Confidence 22221 223345666664
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=4.6e-14 Score=124.85 Aligned_cols=238 Identities=16% Similarity=0.105 Sum_probs=154.6
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC---CcEEEEecCCcceeeeeecCCCcEEEEEeecCCC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA---SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG 142 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (364)
.|.++|...+....+. .+...+....|+|||+.|+..+.+ ..|.+|++.+++... +....+.+...+|+| ++
T Consensus 180 ~l~~~d~~g~~~~~l~---~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG 254 (430)
T PRK00178 180 TLQRSDYDGARAVTLL---QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DG 254 (430)
T ss_pred EEEEECCCCCCceEEe---cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CC
Confidence 5888888766543332 556778999999999999876643 369999998886543 333344556789999 88
Q ss_pred CEEE-EeeCCC--cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCCCCcceEEecc
Q 040533 143 HILT-SGSQDK--SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DN--LVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 143 ~~l~-~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~ 216 (364)
+.|+ +.+.+| .|.++|+.++. ...+..+........|+|+|+.++..+. ++ .|+++|+..++. ..+..
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~----~~lt~ 328 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA----ERVTF 328 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEeec
Confidence 7766 455555 58888887665 3334445555667899999998776653 33 577777765432 22221
Q ss_pred cccceeEEEEccCCCcEEEeecCCCC--CeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEE
Q 040533 217 HRAAVKALAWCPYQFNVLASGGGTQD--GCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 217 ~~~~v~~~~~~~~~~~~~~~~~g~~d--~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i 294 (364)
.........|+|+++.++.+.. .+ ..|.++|+.+++... +..........|+|+|+.++..... +....+++
T Consensus 329 ~~~~~~~~~~Spdg~~i~~~~~--~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~---~g~~~l~~ 402 (430)
T PRK00178 329 VGNYNARPRLSADGKTLVMVHR--QDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQ---QGRGVLML 402 (430)
T ss_pred CCCCccceEECCCCCEEEEEEc--cCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEec---CCceEEEE
Confidence 1223345789999988777653 33 368899998876533 3332233456899999998876421 12345777
Q ss_pred eeCCCCceeeeccccccceeEEeecCC
Q 040533 295 WKYPHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 295 ~d~~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
++.. +.....+..+.+.+...+|+|-
T Consensus 403 ~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 403 VSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECC-CCceEECcCCCCCcCCCccCCC
Confidence 7774 3344445555566777788763
No 244
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.68 E-value=1.1e-14 Score=115.46 Aligned_cols=287 Identities=16% Similarity=0.271 Sum_probs=191.3
Q ss_pred CCCCcceeecccCCCccEEEEEeCCeEEEEEC-CCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC--
Q 040533 41 NLRNDYYSNMMDWGRNNILAIALGLELYLWKQ-ENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE-- 117 (364)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-- 117 (364)
+..+..+...+-.-.++++.++.|.+++||-- +.++.-+.... .-..+++++.+.++...|++|-.+|++.-+.+.
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed 100 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED 100 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence 33444444444444468999999999999964 33443222221 346788999999999999999999999888654
Q ss_pred --CcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE-------------------------------------
Q 040533 118 --TSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD------------------------------------- 158 (364)
Q Consensus 118 --~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d------------------------------------- 158 (364)
....++....|..++..+-|+- ....+++.+.|..+.---
T Consensus 101 fnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~ 179 (404)
T KOG1409|consen 101 FNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITM 179 (404)
T ss_pred hhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEE
Confidence 3455666677888888888876 666676666664432111
Q ss_pred --cc-cCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 159 --VR-VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 159 --~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
+. +.-.++..+.+|.+.+.+++|.+....|++|..|..+.+||+--. ......+.+|...|..+...+.-..+++
T Consensus 180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~--~g~~~el~gh~~kV~~l~~~~~t~~l~S 257 (404)
T KOG1409|consen 180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR--KGTAYELQGHNDKVQALSYAQHTRQLIS 257 (404)
T ss_pred EEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC--cceeeeeccchhhhhhhhhhhhheeeee
Confidence 10 011345667889999999999999999999999999999998643 2346677889999999988877766666
Q ss_pred eecCCCCCeEEEEECCCCeEEEE-E----------------------------------ecCCCeEEEEEcCCccceeee
Q 040533 236 SGGGTQDGCIKIWNVQKGTCIHS-V----------------------------------DTKAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~~~~~~~~-~----------------------------------~~~~~v~~~~~~~~~~~l~~~ 280 (364)
++ .||.|.+||+........ . .....+...+-+....+...|
T Consensus 258 ~~---edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg 334 (404)
T KOG1409|consen 258 CG---EDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMG 334 (404)
T ss_pred cc---CCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccc
Confidence 54 699999999975432100 0 001112222222223333333
Q ss_pred ccCCccCCCCeEEEeeCC-------CCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 281 HGFSSSGDGQKLCLWKYP-------HMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
. +-.+++-|.- +..++..+..-...|+.+.+...-..|+|++.|..|+|||++.
T Consensus 335 ~-------e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 335 F-------EFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred c-------eeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 2 3445555431 1223333333334689999988888999999999999999864
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=6.7e-14 Score=117.84 Aligned_cols=263 Identities=15% Similarity=0.201 Sum_probs=175.8
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCC-C
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG-H 143 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 143 (364)
-.+.+|+.+++.....+......+ .+..|++|..+.|-- ..+.+++|++.+.+.+.. .-|...|+.+.++|... .
T Consensus 105 pn~~v~~vet~~~~s~~q~k~Q~~--W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~ 180 (566)
T KOG2315|consen 105 PNVLVYNVETGVQRSQIQKKMQNG--WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPP 180 (566)
T ss_pred CceeeeeeccceehhheehhhhcC--cccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCc
Confidence 367799998854433333322233 588999887654433 457899999877443322 33678899999999313 3
Q ss_pred EEEE-----eeCCCcEEEEEcccCc--ceeeeeecccCcEEEEEEcCCCC-EEEEEe--CC---------CeEEEEeCCC
Q 040533 144 ILTS-----GSQDKSIINHDVRVSN--NVTSRINAHTAEVCGLKWSNEGN-LLASGG--DD---------NLVHVWDHSK 204 (364)
Q Consensus 144 ~l~~-----~~~dg~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d---------~~i~iwd~~~ 204 (364)
.+|+ .+.-+.|++|...... ..+..-.-....=..+.|++-|. +|+.++ -| .++++.++..
T Consensus 181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g 260 (566)
T KOG2315|consen 181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG 260 (566)
T ss_pred eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence 4433 2445579999876222 11111111223335688888665 333222 22 3577777662
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCC
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFS 284 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 284 (364)
. .....+ ...++|.++.|+|+++.+.++. |.+-..+.|||++ +.++..+ ..++-+++-|+|.|++++.++
T Consensus 261 -~--s~~V~L-~k~GPVhdv~W~~s~~EF~Vvy-GfMPAkvtifnlr-~~~v~df-~egpRN~~~fnp~g~ii~lAG--- 330 (566)
T KOG2315|consen 261 -E--SVSVPL-LKEGPVHDVTWSPSGREFAVVY-GFMPAKVTIFNLR-GKPVFDF-PEGPRNTAFFNPHGNIILLAG--- 330 (566)
T ss_pred -c--eEEEec-CCCCCceEEEECCCCCEEEEEE-ecccceEEEEcCC-CCEeEeC-CCCCccceEECCCCCEEEEee---
Confidence 1 222233 2478999999999998777776 4688899999985 5566555 456778999999999987653
Q ss_pred ccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeC------CCcEEEEEeeCCC
Q 040533 285 SSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA------DETLRFWEAFGPS 343 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------dg~i~vw~~~~~~ 343 (364)
.+.-.|.|.+||..+.+++..+.... -+-..|+|||++++|++. |+.++||++....
T Consensus 331 FGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 331 FGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred cCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 23458999999999999998887644 356899999999999864 7889999987643
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.67 E-value=9.1e-14 Score=122.84 Aligned_cols=237 Identities=16% Similarity=0.127 Sum_probs=152.7
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC---CcEEEEecCCcceeeeeecCCCcEEEEEeecCCC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA---SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG 142 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (364)
.|.++|........+. .+...+.+.+|+|||++|+.+..+ ..|++||+.+++... +..+...+.+++|+| ++
T Consensus 171 ~l~~~d~~g~~~~~l~---~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp-Dg 245 (417)
T TIGR02800 171 ELQVADYDGANPQTIT---RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP-DG 245 (417)
T ss_pred eEEEEcCCCCCCEEee---cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CC
Confidence 6888888755543333 456678899999999999987644 479999998876543 333556677899999 77
Q ss_pred CEEE-EeeCCC--cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCCCCcceEEecc
Q 040533 143 HILT-SGSQDK--SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD-N--LVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 143 ~~l~-~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~ 216 (364)
+.|+ +.+.++ .|++||+.++. ...+..+........|+|+++.|+..+.. + .|+++|+.... ...+..
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~ 319 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTF 319 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeec
Confidence 7665 445444 58888887654 33333444445577899999988766543 3 57778876432 233443
Q ss_pred cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 217 HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 217 ~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
+...+....|+|+++.++.+........|.+||+.++... .+..........|+|+|+.++..... .....+++.+
T Consensus 320 ~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~~---~~~~~l~~~~ 395 (417)
T TIGR02800 320 RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATTR---GGRGVLGLVS 395 (417)
T ss_pred CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEeC---CCcEEEEEEE
Confidence 4556778899999977777653111127999999876543 33333334567899999988876531 1123466665
Q ss_pred CCCCceeeeccccccceeEEee
Q 040533 297 YPHMTKWGELQHQTSRILELSQ 318 (364)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~i~~ 318 (364)
. +++....+..+.+.+..++|
T Consensus 396 ~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 396 T-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred C-CCceeeECCCCCCCcCCCCC
Confidence 4 34444555444444454444
No 247
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.67 E-value=1e-13 Score=107.66 Aligned_cols=269 Identities=15% Similarity=0.195 Sum_probs=187.6
Q ss_pred CCeEEEEECCCCceeeeeeec-CCCCCceEEEEcC---CCC-EEEEEecCCcEEEEecCCcceeeeeecCC------CcE
Q 040533 64 GLELYLWKQENGEVQKLLKVT-GEDDFPTSISWSQ---DAK-TLAVGYMASKLQLWDAETSKLIRNLEGHD------KRV 132 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~---~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~v 132 (364)
-|.+.+|++...+..+.-++. .....+..+.|.. +|. .++-+...|.|.+|..........+++-. ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 368899998887765532222 2345577788864 455 56667788999999876555444444321 124
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCc-ceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcc
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSN-NVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKC 210 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~ 210 (364)
.++.|++ .+..++++..+|.+.+-+..... ...+..+.|.-++....|+. +.+++++|+.|+.+..||+|.+.. -.
T Consensus 125 lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~i 202 (339)
T KOG0280|consen 125 LSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-FI 202 (339)
T ss_pred eEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-ee
Confidence 5778988 88889999999998855543222 12336788999999999987 457999999999999999994431 22
Q ss_pred eEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-CeEEEEEecCCCeEEEEEcCCcc--ceeeeccCCccC
Q 040533 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-GTCIHSVDTKAQICGLEWNRHHK--EILSGHGFSSSG 287 (364)
Q Consensus 211 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~~~~~ 287 (364)
-+..+.|...|.++.-+|..+..+++|+ .|..|++||.++ ++++..-...+.|..+.++|.-. .+++.
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGs--YDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C------- 273 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGS--YDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAAC------- 273 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEec--cccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHH-------
Confidence 2225568889999999998889999977 999999999995 77887777778999999999755 23222
Q ss_pred CCCeEEEeeCCCC--c---eeeeccccccceeEEeecCCCCEEEEEe-CCCcEE-EEEeeCCC
Q 040533 288 DGQKLCLWKYPHM--T---KWGELQHQTSRILELSQSPDGLTVVSAA-ADETLR-FWEAFGPS 343 (364)
Q Consensus 288 ~~~~i~i~d~~~~--~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~-vw~~~~~~ 343 (364)
.-+..+|-+.... + .....+.|.+-...-.|.....+|||++ .|..++ +|-.-++.
T Consensus 274 Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 274 MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred HhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 2444556555433 2 3334556777777777765556788875 566644 77654443
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.67 E-value=1.8e-12 Score=108.09 Aligned_cols=270 Identities=13% Similarity=0.084 Sum_probs=169.9
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec----------CCcEEEEecCCcceeeeeecCC-----
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM----------ASKLQLWDAETSKLIRNLEGHD----- 129 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~----- 129 (364)
+.|.+.|..+++....... +. ....+ +|||++.|+++.. +..|.+||..+.+.+..+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~-G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG-GF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEc-cC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 7999999999987666553 22 23334 9999998887765 6789999999999998877422
Q ss_pred --CcEEEEEeecCCCCEEEEee-C-CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 130 --KRVATASWNHWNGHILTSGS-Q-DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 130 --~~v~~~~~~~~~~~~l~~~~-~-dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.....++++| ++++|+... . +..|.+.|+.+++. +..+.- .+...-+..+++..++ -+.||......+...
T Consensus 103 ~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kv-v~ei~v-p~~~~vy~t~e~~~~~--~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 103 VGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAF-VRMMDV-PDCYHIFPTANDTFFM--HCRDGSLAKVGYGTK 177 (352)
T ss_pred ccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcE-EEEEeC-CCCcEEEEecCCccEE--EeecCceEEEEecCC
Confidence 2234788999 998888766 3 68999999997764 333322 1222222222222221 223444443333221
Q ss_pred CCCc--ceEEeccccccee-EEEEcc-CCCcEEEeecCCCCCeEEEEECCCC-----eEEEEEec--------CCCeEEE
Q 040533 206 SSSK--CLHRFRDHRAAVK-ALAWCP-YQFNVLASGGGTQDGCIKIWNVQKG-----TCIHSVDT--------KAQICGL 268 (364)
Q Consensus 206 ~~~~--~~~~~~~~~~~v~-~~~~~~-~~~~~~~~~~g~~d~~i~i~d~~~~-----~~~~~~~~--------~~~v~~~ 268 (364)
.... ....+.....++. .-.|.+ ++..++++ .+|+|.+.|+... +....+.. .+.+..+
T Consensus 178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs----~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT----YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred CceEEeeeeeecCCccccccCCceEcCCCcEEEEe----cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 1100 0001111001100 003455 77666665 3599999996443 22322211 1224459
Q ss_pred EEcCCccceeeec-cCC---ccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC-EEEEEe-CCCcEEEEEeeCC
Q 040533 269 EWNRHHKEILSGH-GFS---SSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL-TVVSAA-ADETLRFWEAFGP 342 (364)
Q Consensus 269 ~~~~~~~~l~~~~-~~~---~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~dg~i~vw~~~~~ 342 (364)
+++++++.+++.. +-. --...+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.++|..++
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 9999999988742 100 001136899999999999998874 34789999999999 888776 5788999999999
Q ss_pred CCCcce
Q 040533 343 SGSGDF 348 (364)
Q Consensus 343 ~~~~~~ 348 (364)
+.++.+
T Consensus 333 k~i~~i 338 (352)
T TIGR02658 333 KELSSV 338 (352)
T ss_pred eEEeee
Confidence 888877
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.2e-13 Score=121.80 Aligned_cols=238 Identities=15% Similarity=0.112 Sum_probs=152.4
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC-C--cEEEEecCCcceeeeeecCCCcEEEEEeecCCC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA-S--KLQLWDAETSKLIRNLEGHDKRVATASWNHWNG 142 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (364)
.|.++|........+. .+...+.+..|+|||+.|+..+.+ + .|.+||+.+++... +..........+|+| ++
T Consensus 199 ~l~i~d~dG~~~~~l~---~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG 273 (448)
T PRK04792 199 QLMIADYDGYNEQMLL---RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DG 273 (448)
T ss_pred EEEEEeCCCCCceEee---cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CC
Confidence 6777787665443222 456678899999999999876543 2 58899998876433 222233445789999 78
Q ss_pred CEEE-EeeCCCc--EEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCCCCcceEEecc
Q 040533 143 HILT-SGSQDKS--IINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DN--LVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 143 ~~l~-~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~ 216 (364)
+.|+ +.+.+|. |.++|+.+++ ...+..+.......+|+||++.++..+. ++ .|+++|+..++ ...+..
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~----~~~Lt~ 347 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK----VSRLTF 347 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEEec
Confidence 7665 4566665 7777877554 3334445555677899999998876653 33 46666765443 222221
Q ss_pred cccceeEEEEccCCCcEEEeecCCCCC--eEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEE
Q 040533 217 HRAAVKALAWCPYQFNVLASGGGTQDG--CIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 217 ~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i 294 (364)
........+|+|+|+.++.+.. .++ .|.++|+.+++... +..........|+|+|+.++..... .....+++
T Consensus 348 ~g~~~~~~~~SpDG~~l~~~~~--~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~~---~g~~~l~~ 421 (448)
T PRK04792 348 EGEQNLGGSITPDGRSMIMVNR--TNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTTY---QGKQVLAA 421 (448)
T ss_pred CCCCCcCeeECCCCCEEEEEEe--cCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEec---CCceEEEE
Confidence 2223345789999988777654 344 56678888776533 3222223355899999998765421 11335777
Q ss_pred eeCCCCceeeeccccccceeEEeecCC
Q 040533 295 WKYPHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 295 ~d~~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
++. +++....+..+.+.+...+|+|-
T Consensus 422 ~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 422 VSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EEC-CCCceEECcCCCCCcCCCccCCC
Confidence 786 56666666666667788888873
No 250
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.9e-14 Score=120.33 Aligned_cols=259 Identities=15% Similarity=0.172 Sum_probs=179.3
Q ss_pred CCCCCceEEEEcCCCCEE-EEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 85 GEDDFPTSISWSQDAKTL-AVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
.+...-+.|..+|||+|+ |+|...-.|++||+....+...-......|.-.-.+- +-..++.-..|.+|-+.... +.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsD-D~SK~v~L~~DR~IefHak~-G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSD-DYSKSVFLQNDRTIEFHAKY-GR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEecc-chhhheEeecCceeeehhhc-Ce
Confidence 577788999999999976 5677888999999986554332221223343333333 44555555667777654422 22
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
.....+ ...-..|+++.-..-|+.++....|+-+++..+. .+..+....+.++++..++.. .|+++|+ .+|
T Consensus 127 hy~~RI---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr---fL~P~~~~~~~lN~v~in~~h-gLla~Gt--~~g 197 (703)
T KOG2321|consen 127 HYRTRI---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR---FLNPFETDSGELNVVSINEEH-GLLACGT--EDG 197 (703)
T ss_pred eeeeec---CcCCccccccCCCccEEEeecCcceEEEEccccc---cccccccccccceeeeecCcc-ceEEecc--cCc
Confidence 111111 1223456666544445556666678888877654 466676677889999999976 7888876 999
Q ss_pred eEEEEECCCCeEEEEEecCC------------CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-ccc
Q 040533 244 CIKIWNVQKGTCIHSVDTKA------------QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-HQT 310 (364)
Q Consensus 244 ~i~i~d~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~ 310 (364)
.|..||.+....+..+.... .|+++.|+.+|-.+++|.. .|.+.|||++..+++.... +..
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts------~G~v~iyDLRa~~pl~~kdh~~e 271 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS------TGSVLIYDLRASKPLLVKDHGYE 271 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc------CCcEEEEEcccCCceeecccCCc
Confidence 99999999887777665332 3999999999999999966 9999999999988876654 234
Q ss_pred cceeEEeecCC--CCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 311 SRILELSQSPD--GLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 311 ~~i~~i~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
-+|..+.|.+. +..+++.. ...++|||-.+++....+.. ...++++++=|
T Consensus 272 ~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p 323 (703)
T KOG2321|consen 272 LPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEP-TSDLNDFCFVP 323 (703)
T ss_pred cceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccc-cCCcCceeeec
Confidence 57899999776 34555543 35789999999988766543 33466666654
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.7e-13 Score=119.88 Aligned_cols=244 Identities=15% Similarity=0.123 Sum_probs=151.3
Q ss_pred CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCE---EEEeeCCC--cEEEEEcccCcceeeeeecccCcEEEEEEcC
Q 040533 109 SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHI---LTSGSQDK--SIINHDVRVSNNVTSRINAHTAEVCGLKWSN 183 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 183 (364)
..|.+.|.+.+. .+.+.........-+|+| +++. +++...+| .|.+.++..++. ..+....+.....+|+|
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSP 240 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSP 240 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECC
Confidence 357777776544 344554556677889999 7763 23444444 577778876653 33333455566789999
Q ss_pred CCCEEEEEeC-----CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe--EEEEECCC-CeE
Q 040533 184 EGNLLASGGD-----DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC--IKIWNVQK-GTC 255 (364)
Q Consensus 184 ~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~--i~i~d~~~-~~~ 255 (364)
||+.|+..+. +..+..|++......................+|+|+|+.++.+.. .+|. |.++++.. +..
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~--~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSN--KDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEEC--CCCCceEEEEECcccccc
Confidence 9998887653 223444676543222222222222234467899999987777654 4564 44445532 222
Q ss_pred EEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeC---C
Q 040533 256 IHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA---D 331 (364)
Q Consensus 256 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d 331 (364)
...+. ....+....|+|+|+.++..... .....|.+||+.+++.... ......+....|+|||+.|+..+. .
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~---~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~~~g~ 394 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVI---KGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAGNSNE 394 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEcC---CCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEECCCCC
Confidence 33333 23456788999999988865421 1245799999988876433 323345678999999998875433 3
Q ss_pred CcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 332 ETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 332 g~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
..|+++++.+++... +....+.+...+|||.
T Consensus 395 ~~L~~vdl~~g~~~~-Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 395 SELYLISLITKKTRK-IVIGSGEKRFPSWGAF 425 (428)
T ss_pred ceEEEEECCCCCEEE-eecCCCcccCceecCC
Confidence 568888887765433 3334556778899884
No 252
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.2e-13 Score=116.64 Aligned_cols=278 Identities=14% Similarity=0.189 Sum_probs=192.9
Q ss_pred eeecccCCCcc--EEEEE-eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 47 YSNMMDWGRNN--ILAIA-LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
.++.+.-+|++ ++|.+ ..-.|++||+....+..-..+ ....|.-.-++.|-..++.-..|..|.+..- -|...
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl--Dae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~hy- 128 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL--DAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRHY- 128 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc--cccceeEEEeccchhhheEeecCceeeehhh-cCeee-
Confidence 35667777765 44444 457999999987765333222 1334454555656666666667877776642 23221
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.+. -...-..++++..+.++++.|+ ...|+-++++.+. .+..+....+.++++..++...+|++|+.+|.|..||.+
T Consensus 129 ~~R-IP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGr-fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 129 RTR-IPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGR-FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eee-cCcCCccccccCCCccEEEeec-CcceEEEEccccc-cccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 111 1223456677653555555544 4578888998776 466676777899999999988899999999999999987
Q ss_pred CCCCCcceE---Eeccccc-----ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--CCeEEEEEcCC
Q 040533 204 KMSSSKCLH---RFRDHRA-----AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--AQICGLEWNRH 273 (364)
Q Consensus 204 ~~~~~~~~~---~~~~~~~-----~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~ 273 (364)
....-..+. ....|.+ .|+++.|+.+| .-+++|. .+|.+.|||+++.+++..-.+. .+|..+.|.+.
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGt--s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGT--STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeec--cCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 653311111 1112333 49999999887 5555654 8999999999999988777664 67889999776
Q ss_pred --ccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 274 --HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 274 --~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
+..+++. +...++|||-.+++....+... ..+..+++-|++.+++++-.++.+..|=+..-
T Consensus 283 ~~q~~v~S~-------Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 283 DQQNKVVSM-------DKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CCCceEEec-------chHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 4445554 2678999999999999888754 44999999999999999999888877765543
No 253
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=1.3e-14 Score=125.98 Aligned_cols=286 Identities=17% Similarity=0.240 Sum_probs=198.9
Q ss_pred eecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCC--CEEEEEecCCcEEEEecCCc---ce
Q 040533 48 SNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDA--KTLAVGYMASKLQLWDAETS---KL 121 (364)
Q Consensus 48 ~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~~~---~~ 121 (364)
..++..+|. +-++.+....+++.|+...-.....-..-..-.|-.+.|+|.. .+-++......-.+|++... ..
T Consensus 27 ~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI 106 (1081)
T KOG0309|consen 27 FNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI 106 (1081)
T ss_pred ccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccce
Confidence 344444442 2233333445666676644322222111224457788898743 45566666778889998533 33
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
-..+.+|...|+.+.|+|++...+++++.|-.+..||+++...+......-......++|+-....+.+.+....|.+||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 44567899999999999999999999999999999999988877777766667778899998554555566677899999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC--eEEEEEecCCCeEEEEEcCCccceee
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG--TCIHSVDTKAQICGLEWNRHHKEILS 279 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~ 279 (364)
++.+. .++..+++|...|..+.|+..-...+.+.+ .|++|+.||..+. +..+......++..-.+.|-|.-.+.
T Consensus 187 ~r~gs--~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~--~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 187 LRKGS--TPLCSLKGHVSSVNSIDFNRFKYSEIMSSS--NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred ccCCC--cceEEecccceeeehHHHhhhhhhhhcccC--CCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 99875 467888889999999999876555666655 8999999998754 33455556677777777776554333
Q ss_pred eccCCccCCCCeEEEeeCC----------CCceeeeccccccceeEEeecCCC----------CEEEEEeCCCcEEEEEe
Q 040533 280 GHGFSSSGDGQKLCLWKYP----------HMTKWGELQHQTSRILELSQSPDG----------LTVVSAAADETLRFWEA 339 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~----------~~~~~~~~~~~~~~i~~i~~~~~~----------~~l~~~~~dg~i~vw~~ 339 (364)
-.. -.++.+.+++.+ ..+++..+.+|...|....|-..+ -.|+|-+.|..+++|-+
T Consensus 263 mp~----~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 263 MPM----VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred ccc----cCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence 211 013355555443 246788899999888777664432 27999999999999988
Q ss_pred eC
Q 040533 340 FG 341 (364)
Q Consensus 340 ~~ 341 (364)
.+
T Consensus 339 ~~ 340 (1081)
T KOG0309|consen 339 DS 340 (1081)
T ss_pred cH
Confidence 65
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=1.9e-11 Score=104.52 Aligned_cols=262 Identities=11% Similarity=0.114 Sum_probs=166.1
Q ss_pred ecccCCCc--cEEEEEe----CCeEEEEECCC--CceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCC-
Q 040533 49 NMMDWGRN--NILAIAL----GLELYLWKQEN--GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAET- 118 (364)
Q Consensus 49 ~~~~~~~~--~~~~~~~----~~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~- 118 (364)
.-+.++++ .+.++.. ++.|..|++.. +++..+.+..........++++|++++|+++. .+|.|.++++..
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence 33555553 3555554 46888888765 56555555543456678899999999999887 488999999986
Q ss_pred cceeee---ee----------cCCCcEEEEEeecCCCCEEEEeeC-CCcEEEEEcccCcc-eee--e-eecccCcEEEEE
Q 040533 119 SKLIRN---LE----------GHDKRVATASWNHWNGHILTSGSQ-DKSIINHDVRVSNN-VTS--R-INAHTAEVCGLK 180 (364)
Q Consensus 119 ~~~~~~---~~----------~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~-~~~--~-~~~~~~~v~~~~ 180 (364)
+..... +. .......++.|+| +++++++... ...|.+|++..... +.. . ..........+.
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~ 198 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA 198 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE
Confidence 333222 11 1234578999999 8887777643 34799999876552 211 1 123345678999
Q ss_pred EcCCCCEEEEEe-CCCeEEEEeCCCCC-CCcceEEeccc------ccceeEEEEccCCCcEEEeecCCCCCeEEEEECC-
Q 040533 181 WSNEGNLLASGG-DDNLVHVWDHSKMS-SSKCLHRFRDH------RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ- 251 (364)
Q Consensus 181 ~~~~~~~l~~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~- 251 (364)
|+|+++++++.. .++.|.++++.... ..+.+...... ......+.++|++++++++.. ..+.|.+|++.
T Consensus 199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr--~~~sI~vf~~d~ 276 (345)
T PF10282_consen 199 FSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR--GSNSISVFDLDP 276 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC--TTTEEEEEEECT
T ss_pred EcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec--cCCEEEEEEEec
Confidence 999999887665 56789999887211 11222222211 124678999999999988876 68899999993
Q ss_pred -CCe--EEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC--CCCceeeecc-ccccceeEEee
Q 040533 252 -KGT--CIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY--PHMTKWGELQ-HQTSRILELSQ 318 (364)
Q Consensus 252 -~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~--~~~~~~~~~~-~~~~~i~~i~~ 318 (364)
+++ .+..+.. ......+.++|+|++|+++. ..++.|.+|++ .++.....-. ..-....||.|
T Consensus 277 ~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~-----~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVAN-----QDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEE-----TTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEe-----cCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 333 3344444 34589999999999999876 34788999976 4554433221 12233455554
No 255
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.9e-12 Score=113.31 Aligned_cols=247 Identities=13% Similarity=0.174 Sum_probs=169.2
Q ss_pred eeCCCCCCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCC------------CEEE
Q 040533 36 ILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDA------------KTLA 103 (364)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~ 103 (364)
++..|....+ .++++|++.+++|.++...|.+-|..+-+..+.. +-|...|+.+.|.|-. -+||
T Consensus 8 tlpG~l~~sN--~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsi--e~h~s~V~~VrWap~~~p~~llS~~~~~lliA 83 (1062)
T KOG1912|consen 8 TLPGPLSRSN--RNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSI--ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIA 83 (1062)
T ss_pred cCCCCCCccc--ccccccCccceEEEecCceEEEEehhhhhhhhcc--ccCccceeEEEeccCCCchhccCccccceeEE
Confidence 3344433334 7889999999999999999999998877765444 4788999999998721 2678
Q ss_pred EEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecC--CC-CEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEE
Q 040533 104 VGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHW--NG-HILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLK 180 (364)
Q Consensus 104 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 180 (364)
++.-.|.|.+||...+..+..+..|..++..++|-|. +. ++|++-....++.+|+..+++.+.+.- .......|+.
T Consensus 84 saD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-ys~~iLs~f~ 162 (1062)
T KOG1912|consen 84 SADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-YSHEILSCFR 162 (1062)
T ss_pred eccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc-cCCcceeeee
Confidence 8888999999999999988899999999999999762 22 567777777899999999998755433 3334567799
Q ss_pred EcC-CCCEEEEEeCCCeEEEEeCCCCCC----CcceEEeccccc-------------------------ceeEEEEccCC
Q 040533 181 WSN-EGNLLASGGDDNLVHVWDHSKMSS----SKCLHRFRDHRA-------------------------AVKALAWCPYQ 230 (364)
Q Consensus 181 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~-------------------------~v~~~~~~~~~ 230 (364)
+.| |.+.+..-+..|.+.+.+.-.... ++..+.-..|.+ ..-.++|+|.-
T Consensus 163 ~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~ 242 (1062)
T KOG1912|consen 163 VDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW 242 (1062)
T ss_pred eCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh
Confidence 999 667777777788887776532211 111111111111 01135678876
Q ss_pred CcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcC--CccceeeeccCCccCCCCeEEEee
Q 040533 231 FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNR--HHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 231 ~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
++++... ....+.++|++-..++..+..+ +.+.-+.+-| ....+++.+. +|.+.+|-
T Consensus 243 rn~lfi~---~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~------nG~ltirv 302 (1062)
T KOG1912|consen 243 RNILFIT---FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHS------NGRLTIRV 302 (1062)
T ss_pred hceEEEE---eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEec------CCeEEEEE
Confidence 6666654 4788999999887777666543 2233333333 3444555544 56665554
No 256
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.56 E-value=4.5e-12 Score=105.90 Aligned_cols=300 Identities=12% Similarity=0.121 Sum_probs=197.5
Q ss_pred cceeecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC---------------
Q 040533 45 DYYSNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA--------------- 108 (364)
Q Consensus 45 ~~~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------- 108 (364)
+..+....|||.+ .++...-..|.+|....... +..+ . ...|..+.|||.+++|.+=+..
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~--l~~~-~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAK--LVRF-R-HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccccchhh--eeee-e-cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 3457788899965 55555567899999877663 3333 2 3458999999999999985432
Q ss_pred CcEEEEecCCcceeeeeecCCCc--EE-EEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec-ccCcEEEEEEcCC
Q 040533 109 SKLQLWDAETSKLIRNLEGHDKR--VA-TASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA-HTAEVCGLKWSNE 184 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~v~~~~~~~~ 184 (364)
..+.+||+.+|..+..+.....+ .. -+.|+. ++.++|-. ....+.++++ +.......+.. ....|...+|+|.
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 35999999999999888876555 44 678887 77666655 3447899997 34321111111 1356888999995
Q ss_pred C--CEEEE-----EeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec------CC--CCCeEEEEE
Q 040533 185 G--NLLAS-----GGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG------GT--QDGCIKIWN 249 (364)
Q Consensus 185 ~--~~l~~-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------g~--~d~~i~i~d 249 (364)
+ ..|+. .+.++.+++|.+..... +.+-.-....-..+.|.+.|.++++-.- .+ -+..+++++
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~---l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~ 261 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSV---LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR 261 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCe---eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence 4 34443 45678899999874322 2221112223346889998887766431 00 135688888
Q ss_pred CCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEe
Q 040533 250 VQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 329 (364)
++...+.-.....++|...+|.|.++.+++..++. .-.+.++|++.. ....+ ..+.=..+.|+|.+++++.++
T Consensus 262 ~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~----pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 262 ITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYM----PASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred ecccccceeccccccceeeeecccCCceeEEeccc----ccceeecccccc-eEEec--CCcccccccccCcccEEEEec
Confidence 87544443445678999999999999988776543 888999998765 33332 233446788999999998877
Q ss_pred CC---CcEEEEEeeCCCCCc-ceeccCCceeeeeeccC
Q 040533 330 AD---ETLRFWEAFGPSGSG-DFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 330 ~d---g~i~vw~~~~~~~~~-~~~~~~~~v~~~~~sp~ 363 (364)
-| |.+-+||........ .+.+. ...-+.|||.
T Consensus 335 F~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd 370 (561)
T COG5354 335 FDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPD 370 (561)
T ss_pred CCccccceEEeccCCceEEEEEeecC--CceEeeccCC
Confidence 65 679999987655443 33322 2233456653
No 257
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1e-12 Score=114.11 Aligned_cols=259 Identities=15% Similarity=0.218 Sum_probs=179.5
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc---------------eeeeeecCCCcEEEEEeecCCCCEEEEeeCC
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK---------------LIRNLEGHDKRVATASWNHWNGHILTSGSQD 151 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 151 (364)
.....|++|+....++|+|+.||.++|..+.+.. .-+++.+|...|..+.|+. +.+.|.+...+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCCC
Confidence 4457899999999999999999999999886431 1246788999999999998 88899999999
Q ss_pred CcEEEEEcccCcceeeeee-cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC
Q 040533 152 KSIINHDVRVSNNVTSRIN-AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ 230 (364)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 230 (364)
|.|.+|-+-.+.-...... ...+.|.+++|+.+|..++....||.|.+=.+...... -+.++ ......+.|++|.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIw--gKeLk--g~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIW--GKELK--GQLLAHVLWSEDL 168 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceec--chhcc--hheccceeecccH
Confidence 9999999987764433333 24567899999999999999999999887665432111 01111 1223468899998
Q ss_pred CcEEEeecCCCCCeEEEEECCCCe-------EEEEEe-----cCCCeEEEEEc--------CCccceeeeccCCccCCCC
Q 040533 231 FNVLASGGGTQDGCIKIWNVQKGT-------CIHSVD-----TKAQICGLEWN--------RHHKEILSGHGFSSSGDGQ 290 (364)
Q Consensus 231 ~~~~~~~~g~~d~~i~i~d~~~~~-------~~~~~~-----~~~~v~~~~~~--------~~~~~l~~~~~~~~~~~~~ 290 (364)
+.+++.- ..|.+.+||.+..- +.-... .+..+..+.|. |+.+.++++.. +|
T Consensus 169 ~~~Lf~~---ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~------nG 239 (1189)
T KOG2041|consen 169 EQALFKK---ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA------NG 239 (1189)
T ss_pred HHHHhhh---cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc------Cc
Confidence 7666632 68999999986421 111111 12235555554 46666776654 67
Q ss_pred eEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC---------CcEEEEEeeCCCCCcceeccCCceeeeeec
Q 040533 291 KLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD---------ETLRFWEAFGPSGSGDFVSHLDGLLSLKVS 361 (364)
Q Consensus 291 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---------g~i~vw~~~~~~~~~~~~~~~~~v~~~~~s 361 (364)
.+.|..-.+......+.. .-.+..+.|+++|..|+.++.| +.|.++.. -+..+.+++.....|++++|-
T Consensus 240 r~QiMR~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWE 317 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWE 317 (1189)
T ss_pred eehhhhhcCCCCCeEEec-ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEc
Confidence 776655433322222222 2568899999999999998764 24666643 345667777778889998884
No 258
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=9.2e-12 Score=112.42 Aligned_cols=141 Identities=18% Similarity=0.267 Sum_probs=118.9
Q ss_pred cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee-eeecCCCcEEEE
Q 040533 57 NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR-NLEGHDKRVATA 135 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~v~~~ 135 (364)
.+.+++.-+.|.+|+....+. +. .+.+|++.|.++.|+.||.++++.++|.++++|++++.+... ..-+|..+|..+
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~-p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNK-PI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWAC 224 (967)
T ss_pred EEEeccccccEEEEeccccCC-cc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEE
Confidence 466666779999999883332 22 566999999999999999999999999999999999998776 666799999999
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc-CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT-AEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+|.| + .+++++.|.+.++|+.+... ...+..|. ..+..++..++...+++++.|+.+++||+..
T Consensus 225 ~~~~-n--~i~t~gedctcrvW~~~~~~--l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 225 CFLP-N--RIITVGEDCTCRVWGVNGTQ--LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred Eecc-c--eeEEeccceEEEEEecccce--ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9988 5 99999999999999776333 44566665 5689999999999999999999999999754
No 259
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.9e-12 Score=112.46 Aligned_cols=290 Identities=17% Similarity=0.259 Sum_probs=200.0
Q ss_pred CCCCcceeecccCCCc-c-EEEEEeCCeEEEEECCCCce-------------eeeeeecCCCCCceEEEEcCCCCEEEEE
Q 040533 41 NLRNDYYSNMMDWGRN-N-ILAIALGLELYLWKQENGEV-------------QKLLKVTGEDDFPTSISWSQDAKTLAVG 105 (364)
Q Consensus 41 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~i~iw~~~~~~~-------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 105 (364)
.+++.....+++|+.+ + +.+++.||.+++..+.+... ..-.++.||...|.-+.|+.+.+.|-+.
T Consensus 10 ~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 10 GIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence 4556777899999974 4 55667899999998765321 1224567999999999999999999999
Q ss_pred ecCCcEEEEecCCcceeeeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC
Q 040533 106 YMASKLQLWDAETSKLIRNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN 183 (364)
Q Consensus 106 ~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 183 (364)
..+|.|.||-+-.|.....+. ...+-|.+++|+. +|..++....||.|.+=.++..+..-+.+++ .....+.|++
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~ 166 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSE 166 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecc
Confidence 999999999998886554433 2456799999999 9999999999999988777644322222222 2234688999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCC----cceEE----ecccccceeEEEEc--------cCCCcEEEeecCCCCCeEEE
Q 040533 184 EGNLLASGGDDNLVHVWDHSKMSSS----KCLHR----FRDHRAAVKALAWC--------PYQFNVLASGGGTQDGCIKI 247 (364)
Q Consensus 184 ~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~----~~~~~~~v~~~~~~--------~~~~~~~~~~~g~~d~~i~i 247 (364)
|.+.++.+-..|.+.+||....-.. .+... +......+-.+.|. |+.+.+.++- ..|.+.+
T Consensus 167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy---~nGr~Qi 243 (1189)
T KOG2041|consen 167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY---ANGRMQI 243 (1189)
T ss_pred cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE---cCceehh
Confidence 9998888888999999996532110 11011 11112235555553 4555555543 5888888
Q ss_pred EECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCcc---CCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCE
Q 040533 248 WNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSS---GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLT 324 (364)
Q Consensus 248 ~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~---~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 324 (364)
-.-.+......+..+-.+..+.|+++|..|++++..... .+.+.|.+|. .-|+.+.+++.....|++++|-..|-.
T Consensus 244 MR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLr 322 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLR 322 (1189)
T ss_pred hhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceE
Confidence 766665555566667889999999999999887532211 1223555554 567888888888889999999776655
Q ss_pred EEEEeCCCcEEEEE
Q 040533 325 VVSAAADETLRFWE 338 (364)
Q Consensus 325 l~~~~~dg~i~vw~ 338 (364)
++.+ .|+.|++=+
T Consensus 323 iA~A-vdsfiyfan 335 (1189)
T KOG2041|consen 323 IAIA-VDSFIYFAN 335 (1189)
T ss_pred EEEE-ecceEEEEe
Confidence 5443 344444433
No 260
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.52 E-value=6.8e-11 Score=98.28 Aligned_cols=277 Identities=11% Similarity=0.115 Sum_probs=183.8
Q ss_pred ecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC-cEEEEecCCcceeeeeec
Q 040533 49 NMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS-KLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~ 127 (364)
..++..+..+++.-+.|...+.+...+-..++ +|...|.-..+.-+++-++.|..|| .+-|||..+++.. .+..
T Consensus 325 edfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~ 399 (668)
T COG4946 325 EDFAVVNGDYIALVSRGKAFIMRPWDGYSIQV----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEK 399 (668)
T ss_pred hhhccCCCcEEEEEecCcEEEECCCCCeeEEc----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeC
Confidence 33555566778877888999988777654333 6677899999998888999999999 8999999877644 4555
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCC----eEEEEeCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDN----LVHVWDHS 203 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~ 203 (364)
.-+.|.++..+| +++.++.+.....+.+.|++++.. ...-+...+-|+.+.|||+++++|.+--+| .|+++|+.
T Consensus 400 ~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv-~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 400 DLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNV-RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred CccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCe-eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 678899999999 999999999999999999998874 333445667899999999999999887665 58899987
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCC----CCCeEEEEECCC--CeEEEEEe---------------c-
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT----QDGCIKIWNVQK--GTCIHSVD---------------T- 261 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~----~d~~i~i~d~~~--~~~~~~~~---------------~- 261 (364)
..+ +.......+.=.+-+|.|+++++...+..+ .|..+.=+.... .--+..+. .
T Consensus 478 ~~K----iy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~e 553 (668)
T COG4946 478 GGK----IYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSE 553 (668)
T ss_pred CCe----EEEecCCcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCcc
Confidence 643 333333333345667888887776544211 222222222111 00000000 0
Q ss_pred -------------------CCCeEEEEEcCCccceeeecc--------CCccCCCCeEEEeeCCCCceeeecccccccee
Q 040533 262 -------------------KAQICGLEWNRHHKEILSGHG--------FSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL 314 (364)
Q Consensus 262 -------------------~~~v~~~~~~~~~~~l~~~~~--------~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 314 (364)
++.-.+++-..+++.++.... +......|.+.+||+++.+... -...+.
T Consensus 554 a~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e----~k~nvs 629 (668)
T COG4946 554 AGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEE----YKDNVS 629 (668)
T ss_pred ccceehhhhcccccccccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHH----Hhcccc
Confidence 011122222233322222110 1123446677777776644321 235688
Q ss_pred EEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 315 ELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
++..|+|+..++. -.||.++.++++.
T Consensus 630 s~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 630 SFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred eEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 9999999999888 8899999999987
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.5e-11 Score=103.88 Aligned_cols=285 Identities=15% Similarity=0.256 Sum_probs=185.9
Q ss_pred eecccCCCc--cEEEEEe-----------CCeEEEEECCCCceeeeeeecCCCCCc-eEEEEcCCCCEEEEEecCCcEEE
Q 040533 48 SNMMDWGRN--NILAIAL-----------GLELYLWKQENGEVQKLLKVTGEDDFP-TSISWSQDAKTLAVGYMASKLQL 113 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~i 113 (364)
+.-+++||. .+++.+. ...+.|||+.+|.....+........+ .-..||.|++++|.-.. ..|.|
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisI 330 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISI 330 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEE
Confidence 566788885 3555442 258999999999887666542222222 34689999999998765 46999
Q ss_pred EecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC-----CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEE
Q 040533 114 WDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD-----KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188 (364)
Q Consensus 114 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (364)
|+..+..++..-.-.-..|....|+| .+++||-=... ..+.+-.+.+.+. ++...-|+-.=..+.|-.+|.+|
T Consensus 331 yEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~-iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 331 YETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKRE-IRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccce-eeeccceeeeccEEEeccCCcEE
Confidence 99877555443333456789999999 77777654322 2355555554443 33333444444567788888888
Q ss_pred EEEe----------CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-C---e
Q 040533 189 ASGG----------DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-G---T 254 (364)
Q Consensus 189 ~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~---~ 254 (364)
+.-- .-..+-|+.++....+ +... .-...|...+|-|.|..+.+..+.....++.+|.+.+ . +
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIp--ve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIP--VEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCC--ceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 7532 1124556666654332 2222 2356788999999998777766544567889998873 2 2
Q ss_pred EEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec-cccccceeEEeecCCCCEEEEEeC---
Q 040533 255 CIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL-QHQTSRILELSQSPDGLTVVSAAA--- 330 (364)
Q Consensus 255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~--- 330 (364)
.+..++. ...+.+.|+|.|++++++.. .+..|.+.++|+........- ..| ...+.+.|.|.|+|+++++.
T Consensus 486 lVk~~dk-~~~N~vfwsPkG~fvvva~l---~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 486 LVKELDK-KFANTVFWSPKGRFVVVAAL---VSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred hhhhhcc-cccceEEEcCCCcEEEEEEe---cccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhh
Confidence 2233322 55788999999999988754 246889999998753222221 223 34578999999999999875
Q ss_pred ---CCcEEEEEeeCCC
Q 040533 331 ---DETLRFWEAFGPS 343 (364)
Q Consensus 331 ---dg~i~vw~~~~~~ 343 (364)
|..-++|++....
T Consensus 561 hk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 561 HKVDNGYRIFTFQGRL 576 (698)
T ss_pred hccccceEEEEeecHH
Confidence 4556788876543
No 262
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.52 E-value=1.5e-10 Score=96.69 Aligned_cols=234 Identities=11% Similarity=0.100 Sum_probs=151.7
Q ss_pred eCCeEEEEECCCCceeeeeeecCC-----CCCceEEEEcCCCCEEEEEe-c-CCcEEEEecCCcceeeeeecCCCcEEEE
Q 040533 63 LGLELYLWKQENGEVQKLLKVTGE-----DDFPTSISWSQDAKTLAVGY-M-ASKLQLWDAETSKLIRNLEGHDKRVATA 135 (364)
Q Consensus 63 ~~~~i~iw~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~-~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 135 (364)
.+..|.+||..+.+....+.+... ......++++|||++|++.. . +..|.+.|+.+++.+.++.-.. ...-.
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy 153 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIF 153 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEE
Confidence 368999999999988766655322 22344789999999998776 3 6899999999999998887422 22222
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceee----eeecccCcEE-EEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCC-
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTS----RINAHTAEVC-GLKWSN-EGNLLASGGDDNLVHVWDHSKMSSS- 208 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~----~~~~~~~~v~-~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~- 208 (364)
..+. +..+ .-+.||......+........ .+.....++. .-.|.+ +|+++.+..+ |.|.+.|+......
T Consensus 154 ~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~ 229 (352)
T TIGR02658 154 PTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF 229 (352)
T ss_pred EecC-CccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee
Confidence 2322 2222 233455554444333222111 1111001110 003455 7877777666 99999996543211
Q ss_pred -cceEEecc-------cccceeEEEEccCCCcEEEeecC-------CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCC
Q 040533 209 -KCLHRFRD-------HRAAVKALAWCPYQFNVLASGGG-------TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRH 273 (364)
Q Consensus 209 -~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~g-------~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~ 273 (364)
.....+.. ..+...-++++|+++.+++...+ ...+.|.++|..+++.+..+.....+..++++|+
T Consensus 230 ~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~D 309 (352)
T TIGR02658 230 LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQD 309 (352)
T ss_pred cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCC
Confidence 11111111 23334459999999888874311 0126899999999999999999999999999999
Q ss_pred cc-ceeeeccCCccCCCCeEEEeeCCCCceeeec
Q 040533 274 HK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 274 ~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
++ .|++.. ..++.|.++|..+++.+.++
T Consensus 310 gkp~lyvtn-----~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 310 AKPLLYALS-----TGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCeEEEEeC-----CCCCcEEEEECcCCeEEeee
Confidence 99 776654 33788999999999999887
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.52 E-value=2e-12 Score=109.87 Aligned_cols=186 Identities=17% Similarity=0.232 Sum_probs=149.0
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecC-CCCCceEEEEc------C--------------CCCEEEEEecCCcEEEEec
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTG-EDDFPTSISWS------Q--------------DAKTLAVGYMASKLQLWDA 116 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~s------~--------------~~~~l~~~~~dg~i~iw~~ 116 (364)
++....||.+++|+...++..+-+.-.. -.+..++..|. | |...++-|...|.|.+|++
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~ 87 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSV 87 (541)
T ss_pred EeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEe
Confidence 4455678999999999887654443222 23445555553 2 3346888989999999999
Q ss_pred CCcceeeeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC
Q 040533 117 ETSKLIRNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD 194 (364)
Q Consensus 117 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 194 (364)
..++....+. .|.++|.++.++. +-..|.+++.|+.+..|+..... ........+..+.+++.+||+..+++++
T Consensus 88 ~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~~sl~is~D~~~l~~as-- 163 (541)
T KOG4547|consen 88 AGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLVSSLCISPDGKILLTAS-- 163 (541)
T ss_pred cCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccce-eeeeeccCCCccceEEEcCCCCEEEecc--
Confidence 9999888776 5899999999988 88899999999999999998665 4677778888899999999999999886
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEccC-----CCcEEEeecCCCCCeEEEEECCC
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY-----QFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
+.|++||+++. +.+..|.+|.++|++++|... |.+++.+.. .+.-+.+|-...
T Consensus 164 ~~ik~~~~~~k---evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~--~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 RQIKVLDIETK---EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA--AERGITVWVVEK 221 (541)
T ss_pred ceEEEEEccCc---eEEEEecCCCcceEEEEEEEeccccccceeeeccc--cccceeEEEEEc
Confidence 67999998775 559999999999999999877 778888765 566677776654
No 264
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.51 E-value=8.5e-13 Score=118.93 Aligned_cols=191 Identities=18% Similarity=0.247 Sum_probs=148.8
Q ss_pred ecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCc-----eEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 49 NMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFP-----TSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
..+.|-...++.+..++.+.+||...+...... .+.... .-+-++++.-++++|+.-+.|.+|+....+...
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i---~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKI---QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhc---CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 334444456777888999999998877643222 222221 123346677799999999999999987555445
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.+.+|.+.+..+.|+- ++.++++.+.|.++++|++++.+......-+|+.+|..+.|.|+ .+++++.|.+.++|+.+
T Consensus 170 ~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred eecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 6889999999999999 99999999999999999999888766566789999999999998 89999999999999755
Q ss_pred CCCCCcceEEeccccc-ceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 204 KMSSSKCLHRFRDHRA-AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
.. .+..+.+|.. .+..++..+.. .++++++ .|+.+++||+..
T Consensus 247 ~~----~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g--~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 247 GT----QLEVYDEHSGKGIWKIAVPIGV-IIKVTGG--NDSTLKLWDLNG 289 (967)
T ss_pred cc----eehhhhhhhhcceeEEEEcCCc-eEEEeec--cCcchhhhhhhc
Confidence 32 2446666643 58888888765 6777776 899999999854
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.48 E-value=4e-11 Score=102.05 Aligned_cols=189 Identities=15% Similarity=0.257 Sum_probs=146.4
Q ss_pred CCCCEEEEEecCCcEEEEecCCcceeeeeec---CCCcEEEEEee------c-------------CCCCEEEEeeCCCcE
Q 040533 97 QDAKTLAVGYMASKLQLWDAETSKLIRNLEG---HDKRVATASWN------H-------------WNGHILTSGSQDKSI 154 (364)
Q Consensus 97 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~v~~~~~~------~-------------~~~~~l~~~~~dg~i 154 (364)
|...++|....||.++||+...++....+.. -.+..++..|. | .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999999887766643 12333444442 1 134578888899999
Q ss_pred EEEEcccCcceeeee--ecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 155 INHDVRVSNNVTSRI--NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
.+|++..++. ...+ ..|.+.|+++.++.+-..|.+++.|+.+..|+.... +.+..+...+..+.+++.+||+ .
T Consensus 83 ~~ys~~~g~i-t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---~~~~~~~~~~~~~~sl~is~D~-~ 157 (541)
T KOG4547|consen 83 LLYSVAGGEI-TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---VIIRIWKEQKPLVSSLCISPDG-K 157 (541)
T ss_pred EEEEecCCeE-EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---eeeeeeccCCCccceEEEcCCC-C
Confidence 9999987663 3333 468999999999998889999999999999996653 4577788888889999999998 4
Q ss_pred EEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCC-----ccceeeeccCCccCCCCeEEEeeCCC
Q 040533 233 VLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRH-----HKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~-----~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
+++++ .++|.+||+++++.+..+.++ ++|.++.|-.. |.+++++.. .+..+.+|-...
T Consensus 158 ~l~~a----s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~-----~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 ILLTA----SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA-----AERGITVWVVEK 221 (541)
T ss_pred EEEec----cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc-----cccceeEEEEEc
Confidence 56655 489999999999999999876 77999998877 778777643 255667776543
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.47 E-value=1.8e-11 Score=97.55 Aligned_cols=240 Identities=11% Similarity=0.227 Sum_probs=156.1
Q ss_pred eecccCCC--ccEEEEEeCCeEEEEECCCC---ceeeeeeecCC------------CCCceEEEEcCCCC--EEEEEecC
Q 040533 48 SNMMDWGR--NNILAIALGLELYLWKQENG---EVQKLLKVTGE------------DDFPTSISWSQDAK--TLAVGYMA 108 (364)
Q Consensus 48 ~~~~~~~~--~~~~~~~~~~~i~iw~~~~~---~~~~~~~~~~~------------~~~v~~~~~s~~~~--~l~~~~~d 108 (364)
+.++.|+- +.+.++..+|.|.++.-... +......++.| ...|..+.|.++++ .++..+.|
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd 107 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND 107 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence 44555543 45666777899999874422 11111222222 35688999998764 45556689
Q ss_pred CcEEEEecCCcceee-----------------------------------e-eecCCCcEEEEEeecCCCCEEEEeeCCC
Q 040533 109 SKLQLWDAETSKLIR-----------------------------------N-LEGHDKRVATASWNHWNGHILTSGSQDK 152 (364)
Q Consensus 109 g~i~iw~~~~~~~~~-----------------------------------~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg 152 (364)
.+|++|.+....... . -.+|.--|.+++++. +.+.++++. |=
T Consensus 108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSAD-dL 185 (433)
T KOG1354|consen 108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSAD-DL 185 (433)
T ss_pred cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeecc-ce
Confidence 999999875321100 0 124777889999988 777777764 66
Q ss_pred cEEEEEcccCcceeee--eecc-----cCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCC---cceE---------
Q 040533 153 SIINHDVRVSNNVTSR--INAH-----TAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSS---KCLH--------- 212 (364)
Q Consensus 153 ~i~~~d~~~~~~~~~~--~~~~-----~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~--------- 212 (364)
.|.+|+++-..+.... ++.+ ..-|++..|+| ..+.++..+..|+|++.|+|....- ..+.
T Consensus 186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r 265 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR 265 (433)
T ss_pred eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence 8999998754432221 2222 34578899999 4568888999999999999842110 0000
Q ss_pred -EecccccceeEEEEccCCCcEEEeecCCCC-CeEEEEEC-CCCeEEEEEecCC----------------CeEEEEEcCC
Q 040533 213 -RFRDHRAAVKALAWCPYQFNVLASGGGTQD-GCIKIWNV-QKGTCIHSVDTKA----------------QICGLEWNRH 273 (364)
Q Consensus 213 -~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-~~i~i~d~-~~~~~~~~~~~~~----------------~v~~~~~~~~ 273 (364)
-+.+--..|..+.|++.|+++++ .| -+|++||+ ...+++.+++.+. .-..++|+.+
T Consensus 266 sffseiIsSISDvKFs~sGryils-----RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 266 SFFSEIISSISDVKFSHSGRYILS-----RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred hhHHHHhhhhhceEEccCCcEEEE-----eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11112345788999999977666 44 78999999 4566666665331 1346789999
Q ss_pred ccceeeeccCCccCCCCeEEEeeCCCC
Q 040533 274 HKEILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
+.++++|.- .+..++|+...+
T Consensus 341 ~~~v~TGsy------~n~frvf~~~~g 361 (433)
T KOG1354|consen 341 DSYVMTGSY------NNVFRVFNLARG 361 (433)
T ss_pred cceEecccc------cceEEEecCCCC
Confidence 999998854 888999985443
No 267
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.47 E-value=1.8e-10 Score=110.99 Aligned_cols=239 Identities=9% Similarity=0.094 Sum_probs=158.4
Q ss_pred ceEEEEcCC-CCEEEEEecCCcEEEEecCCcceeeeeec-C-------------CCcEEEEEeecCCCCEEEEee-CCCc
Q 040533 90 PTSISWSQD-AKTLAVGYMASKLQLWDAETSKLIRNLEG-H-------------DKRVATASWNHWNGHILTSGS-QDKS 153 (364)
Q Consensus 90 v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~~l~~~~-~dg~ 153 (364)
...++++++ +..+++-+.++.|+++|.. +..+..+.. . -.....+++++ +++.|+++. .++.
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHA 647 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCce
Confidence 346888875 5566666678889999975 444433322 1 12357789988 676555554 4567
Q ss_pred EEEEEcccCcceeeeeecc-----------------cCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEec
Q 040533 154 IINHDVRVSNNVTSRINAH-----------------TAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR 215 (364)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 215 (364)
|+++|+.++. +..+.+- -.....++++| ++.++++.+.++.|++||..... +..+.
T Consensus 648 Ir~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~----v~~~~ 721 (1057)
T PLN02919 648 LREIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV----TRVFS 721 (1057)
T ss_pred EEEEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe----EEEEe
Confidence 9999986543 2222110 11246799999 56666777778899999976532 11111
Q ss_pred c---------------cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe--------------c-----
Q 040533 216 D---------------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD--------------T----- 261 (364)
Q Consensus 216 ~---------------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------------~----- 261 (364)
+ .-.....++++|++..++++.. .++.|++||+.++....... .
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 1 1123567999999977887765 78999999998765321110 0
Q ss_pred ---CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-------------ccccceeEEeecCCCCEE
Q 040533 262 ---KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-------------HQTSRILELSQSPDGLTV 325 (364)
Q Consensus 262 ---~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-------------~~~~~i~~i~~~~~~~~l 325 (364)
-.....++++++|..+++.. .++.|++||..++....... +.-.....++++++|+.+
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs------~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly 873 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADS------YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF 873 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEEC------CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence 01245789999998666553 38999999998765543221 112356789999999988
Q ss_pred EEEeCCCcEEEEEeeCCCC
Q 040533 326 VSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 326 ~~~~~dg~i~vw~~~~~~~ 344 (364)
++-+.++.|++||+.+++.
T Consensus 874 VaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 874 VADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEECCCCEEEEEECCCCcc
Confidence 8888999999999988764
No 268
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.47 E-value=1.1e-11 Score=96.71 Aligned_cols=232 Identities=17% Similarity=0.214 Sum_probs=152.9
Q ss_pred EEEEEeCCeEEEEECCCCceee-eeeecCCCC---CceEEEEcCCCCEEEEEecCCcEEEEecCCcce--eeeeecCCCc
Q 040533 58 ILAIALGLELYLWKQENGEVQK-LLKVTGEDD---FPTSISWSQDAKTLAVGYMASKLQLWDAETSKL--IRNLEGHDKR 131 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~-~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~ 131 (364)
++-+-..|.|.++.....+... +..+..-.- ...++.|++.+..++++..+|.+.+-+...+.. ++..+.|.-+
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E 167 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE 167 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee
Confidence 3444466888888765433211 111111111 245788999999999999999999666555543 3478899999
Q ss_pred EEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee-eeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCc
Q 040533 132 VATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS-RINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSK 209 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~ 209 (364)
.+...|+..+.+++.+|+.|+.+..||++..+..+. ..+.|...|.++.-+| .+.++++|+.|-.|++||.|+.. +
T Consensus 168 ~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--k 245 (339)
T KOG0280|consen 168 AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--K 245 (339)
T ss_pred eeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--C
Confidence 999999987889999999999999999995544333 3567889999998887 67799999999999999998653 3
Q ss_pred ceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE-----EEEe-cCCCeEEEEEcCCccceeeeccC
Q 040533 210 CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI-----HSVD-TKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 210 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-----~~~~-~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
++..-. ..+.|+.+.++|.-...+..+. .-+-.+|.+...+... ...+ +++-...-.|......++++..+
T Consensus 246 Pl~~~~-v~GGVWRi~~~p~~~~~lL~~C--Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY 322 (339)
T KOG0280|consen 246 PLFKAK-VGGGVWRIKHHPEIFHRLLAAC--MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY 322 (339)
T ss_pred ccccCc-cccceEEEEecchhhhHHHHHH--HhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeecc
Confidence 444332 3578999999997643333332 3444677777654322 1111 22334455554444455554322
Q ss_pred CccCCCCeEE-EeeCCC
Q 040533 284 SSSGDGQKLC-LWKYPH 299 (364)
Q Consensus 284 ~~~~~~~~i~-i~d~~~ 299 (364)
|+.++ +|-.-+
T Consensus 323 -----Dk~~~~~Wl~~t 334 (339)
T KOG0280|consen 323 -----DKKIRQLWLHIT 334 (339)
T ss_pred -----ccceeeeeeecc
Confidence 55544 554433
No 269
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.46 E-value=4.9e-12 Score=99.44 Aligned_cols=245 Identities=18% Similarity=0.314 Sum_probs=171.8
Q ss_pred CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc-----eeeeeecCC------------CcEEEEEeec-CCCCEEEE
Q 040533 86 EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-----LIRNLEGHD------------KRVATASWNH-WNGHILTS 147 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~-~~~~~l~~ 147 (364)
..+.|+++.|...|.||++|...|.|.+|.-+... ....++.|. ..|..+.|.. .....++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999865432 223345543 4577788864 23356777
Q ss_pred eeCCCcEEEEEcccCc-------------------c----------------------eee-eeecccCcEEEEEEcCCC
Q 040533 148 GSQDKSIINHDVRVSN-------------------N----------------------VTS-RINAHTAEVCGLKWSNEG 185 (364)
Q Consensus 148 ~~~dg~i~~~d~~~~~-------------------~----------------------~~~-~~~~~~~~v~~~~~~~~~ 185 (364)
.+.|.+|++|.+.... + +.+ ....|..-|++++|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8899999999886431 0 000 114567778899999988
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCcceEEecccc-----cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE-----
Q 040533 186 NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHR-----AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC----- 255 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~----- 255 (364)
..++++ .|-.|.+|++......-.+..++.|. .-|++..|+|..-.++.-.+ ..|.|++-|++....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs--SkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS--SKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec--CCCcEEehhhhhhhhccCch
Confidence 888766 47789999987654433344444443 35788999998766666654 799999999984221
Q ss_pred -EE--EEe---------cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC-Cceeeeccccc------------
Q 040533 256 -IH--SVD---------TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH-MTKWGELQHQT------------ 310 (364)
Q Consensus 256 -~~--~~~---------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~------------ 310 (364)
+. .+. .-..|..+.|+++|+++++-. -.++++||.+. ..++.++.-|.
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-------yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEn 334 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-------YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEN 334 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-------cceEEEEecccccCCceeechHHHHHHHHHhhhhc
Confidence 11 111 114588899999999999864 57899999975 34566654442
Q ss_pred cce---eEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 311 SRI---LELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 311 ~~i---~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
..| ..+.||.|.+.+++|+..+..-++-..
T Consensus 335 DaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 335 DAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred cceeeeEEEEecCCcccccccccccceeeeccc
Confidence 222 357889999999999988888887643
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=7.1e-10 Score=89.45 Aligned_cols=228 Identities=12% Similarity=0.142 Sum_probs=155.9
Q ss_pred CCcEEEEecCCc--ce-eeeeecCCCcEEEEEeecCCCCEEEEeeC---CCcEEEEEcccCcceeee---eecccCcEEE
Q 040533 108 ASKLQLWDAETS--KL-IRNLEGHDKRVATASWNHWNGHILTSGSQ---DKSIINHDVRVSNNVTSR---INAHTAEVCG 178 (364)
Q Consensus 108 dg~i~iw~~~~~--~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~---~~~~~~~v~~ 178 (364)
+.-|++|++.+. +. ...+-...+..+-++|+| +.+.|.++-. +|.|..|.++.....+.. ......+.+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 456999998733 21 112223567788999999 8888888765 467888877753111221 1122334488
Q ss_pred EEEcCCCCEEEEEe-CCCeEEEEeCCCCCCCcceEEecccccc----------eeEEEEccCCCcEEEeecCCCCCeEEE
Q 040533 179 LKWSNEGNLLASGG-DDNLVHVWDHSKMSSSKCLHRFRDHRAA----------VKALAWCPYQFNVLASGGGTQDGCIKI 247 (364)
Q Consensus 179 ~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~~~~~g~~d~~i~i 247 (364)
+++++++++++++. ..|.|.++-++.............|.+. +....+.|++++++++.- -...|.+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL--G~Dri~~ 171 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL--GTDRIFL 171 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec--CCceEEE
Confidence 99999999988887 4578999998764333333233334444 788999999988888754 3457999
Q ss_pred EECCCCeEEEE----EecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC-ceeeecccc---------ccce
Q 040533 248 WNVQKGTCIHS----VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM-TKWGELQHQ---------TSRI 313 (364)
Q Consensus 248 ~d~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~---------~~~i 313 (364)
|++..|+.... ++.......|.|+|++++.+.... -+++|.+|..... ..+.+++.+ ....
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E-----L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE-----LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEec-----cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence 99998765432 344566889999999999887653 4899999998773 344444322 2456
Q ss_pred eEEeecCCCCEEEEEeC-CCcEEEEEeeCCC
Q 040533 314 LELSQSPDGLTVVSAAA-DETLRFWEAFGPS 343 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~-dg~i~vw~~~~~~ 343 (364)
..|..++||++|+++.. ...|.+|.+....
T Consensus 247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~ 277 (346)
T COG2706 247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDG 277 (346)
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 78999999999988743 3467788776543
No 271
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.4e-10 Score=98.21 Aligned_cols=302 Identities=15% Similarity=0.163 Sum_probs=188.0
Q ss_pred eeecccCCCccE-EEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec-----------CCcEEEE
Q 040533 47 YSNMMDWGRNNI-LAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM-----------ASKLQLW 114 (364)
Q Consensus 47 ~~~~~~~~~~~~-~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg~i~iw 114 (364)
.-+-+.|||.+. ++.--...|.+|--++-...+.+ .|. .|.-+.|||..+||++=+. ...++||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF---~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRF---YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeeEEecCCceEEEEEeccceeeecCccHHHHHhc---cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 456688999763 44444568899976554433222 454 4788999999999998542 2569999
Q ss_pred ecCCcceeeeeecCC--CcE-EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEE
Q 040533 115 DAETSKLIRNLEGHD--KRV-ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASG 191 (364)
Q Consensus 115 ~~~~~~~~~~~~~~~--~~v-~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 191 (364)
|+.+|...+.+.... ..+ .-..||. +++++|.-..+ .|.||+..+-. ++..-.-.-..|....|+|.+++||.=
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~~-sisIyEtpsf~-lld~Kslki~gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTGN-SISIYETPSFM-LLDKKSLKISGIRDFSWSPTSNLLAYW 364 (698)
T ss_pred EccccchhcceeccCCCccccceEEecc-CCceeEEeccc-eEEEEecCcee-eecccccCCccccCcccCCCcceEEEE
Confidence 999999988877532 222 2367898 89999887764 68899866432 122222234678899999998888764
Q ss_pred eCC-----CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec-------CCCCCeEEEEECCCC-eEEEE
Q 040533 192 GDD-----NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG-------GTQDGCIKIWNVQKG-TCIHS 258 (364)
Q Consensus 192 ~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------g~~d~~i~i~d~~~~-~~~~~ 258 (364)
... ..+.+..+..... +++-.-++-.=..+-|-.+|.+|.+-.. ++.-..+.|+.++.. -++..
T Consensus 365 tpe~~~~parvtL~evPs~~~---iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKRE---IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred cccccCCcceEEEEecCccce---eeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 422 3455555544322 3333223222234556666655544221 001234566666553 34566
Q ss_pred EecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC----CceeeeccccccceeEEeecCCCCEEEEE---eCC
Q 040533 259 VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH----MTKWGELQHQTSRILELSQSPDGLTVVSA---AAD 331 (364)
Q Consensus 259 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~---~~d 331 (364)
++....+...+|-|.|..+++-++- ....++.+|.+.+ .+.+..+.. ...+.+.|+|.|++++.+ |..
T Consensus 442 velke~vi~FaWEP~gdkF~vi~g~---~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~ 516 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHGDKFAVISGN---TVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRR 516 (698)
T ss_pred eecchheeeeeeccCCCeEEEEEcc---ccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccc
Confidence 6777889999999999988765431 2267788998873 233334432 456789999999998876 457
Q ss_pred CcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 332 ETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 332 g~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|.+.++|+.-......-.......+.+.|.|.
T Consensus 517 g~l~F~D~~~a~~k~~~~~eh~~at~veWDPt 548 (698)
T KOG2314|consen 517 GDLEFYDTDYADLKDTASPEHFAATEVEWDPT 548 (698)
T ss_pred cceEEEecchhhhhhccCccccccccceECCC
Confidence 89999998842222211111223455566553
No 272
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.43 E-value=5.2e-10 Score=97.43 Aligned_cols=268 Identities=11% Similarity=0.038 Sum_probs=164.7
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEE-
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVAT- 134 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~- 134 (364)
+.+++++.++.|+.+|..+|+..-...+... ....+.. ++..+++++.+|.+..+|.++|+.+....... .+.+
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~ 140 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDER--LSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSP 140 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCC--cccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecC
Confidence 4577777889999999999986544433221 1112222 46778888899999999999999887665332 2222
Q ss_pred EEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcE-----EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCc
Q 040533 135 ASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEV-----CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSK 209 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 209 (364)
... .+..++.++.+|.+..+|.++++.... ........ .+... .+..++.+..++.+..+|.+++..
T Consensus 141 p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~-~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~-- 212 (377)
T TIGR03300 141 PLV---ANGLVVVRTNDGRLTALDAATGERLWT-YSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQP-- 212 (377)
T ss_pred CEE---ECCEEEEECCCCeEEEEEcCCCceeeE-EccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCE--
Confidence 222 345677778899999999988764332 21111111 01111 124677788889999999876542
Q ss_pred ceEEeccc-c-c-----c---e-eEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCcccee
Q 040533 210 CLHRFRDH-R-A-----A---V-KALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEIL 278 (364)
Q Consensus 210 ~~~~~~~~-~-~-----~---v-~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 278 (364)
+...... . + . + ....+. +..++++. .+|.+..+|..+++.+....... ...... .+..++
T Consensus 213 -~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~~~-~~~p~~--~~~~vy 283 (377)
T TIGR03300 213 -LWEQRVALPKGRTELERLVDVDGDPVVD--GGQVYAVS---YQGRVAALDLRSGRVLWKRDASS-YQGPAV--DDNRLY 283 (377)
T ss_pred -eeeeccccCCCCCchhhhhccCCccEEE--CCEEEEEE---cCCEEEEEECCCCcEEEeeccCC-ccCceE--eCCEEE
Confidence 2211100 0 0 0 0 111111 23455543 68999999999998877665322 112222 344555
Q ss_pred eeccCCccCCCCeEEEeeCCCCceeeecccc-ccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCC
Q 040533 279 SGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLD 353 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 353 (364)
++. .++.+..+|..+++.+.+.... ......... .+..|++++.+|.|+++|..+++.+..+..+..
T Consensus 284 v~~------~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 284 VTD------ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred EEC------CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 443 3899999999999887665321 112222222 466899999999999999999988777765443
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.42 E-value=4.8e-10 Score=106.21 Aligned_cols=284 Identities=17% Similarity=0.229 Sum_probs=174.6
Q ss_pred eecccCCCc--cEEEEEeCCeEEEE----ECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC----
Q 040533 48 SNMMDWGRN--NILAIALGLELYLW----KQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE---- 117 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~---- 117 (364)
+..+.+-++ .++.+..+|.|.+. +..+......-.+ ...|.+++||||+..|+..+.+|++.+.+..
T Consensus 78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i 154 (928)
T PF04762_consen 78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPI 154 (928)
T ss_pred EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEE
Confidence 455555443 47777789999999 6655554433333 6689999999999999999999998887531
Q ss_pred -----------C--------cceeeeeec------------------------CCCcEEEEEeecCCCCEEEEeeC---C
Q 040533 118 -----------T--------SKLIRNLEG------------------------HDKRVATASWNHWNGHILTSGSQ---D 151 (364)
Q Consensus 118 -----------~--------~~~~~~~~~------------------------~~~~v~~~~~~~~~~~~l~~~~~---d 151 (364)
. |+.-..|++ +...-..++|-. ||.++|+.+. .
T Consensus 155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~ 233 (928)
T PF04762_consen 155 SEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPET 233 (928)
T ss_pred EEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCC
Confidence 0 111111111 222445788988 9999998874 2
Q ss_pred ---CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCCCcceEEecccccceeEEE
Q 040533 152 ---KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD---DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALA 225 (364)
Q Consensus 152 ---g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 225 (364)
..++||+-+ +. +......-.+--.+++|.|.|+++|+.-. ...|.+|.-+....++....+......|..+.
T Consensus 234 ~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~ 311 (928)
T PF04762_consen 234 GSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELA 311 (928)
T ss_pred CceeEEEEECCC-ce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEE
Confidence 468889854 22 22222222333457899999999998764 35677787544333333333334566799999
Q ss_pred EccCCCcEEEeecCCCCCeEEEEECCCCeE--EEEEe--cCCCeEEEEEcCCccc-eeeecc----------CC------
Q 040533 226 WCPYQFNVLASGGGTQDGCIKIWNVQKGTC--IHSVD--TKAQICGLEWNRHHKE-ILSGHG----------FS------ 284 (364)
Q Consensus 226 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~~--~~~~v~~~~~~~~~~~-l~~~~~----------~~------ 284 (364)
|++++. +|+..- ...|.+|-..+..- .+.+. ....+..+.|+|...+ |..... +.
T Consensus 312 Wn~ds~-iLAv~~---~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~ 387 (928)
T PF04762_consen 312 WNSDSE-ILAVWL---EDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPG 387 (928)
T ss_pred ECCCCC-EEEEEe---cCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCC
Confidence 999995 555442 44599999988643 22232 2344556999986544 222211 00
Q ss_pred -ccCCCCeEEEeeCCCCc-----------ee--eeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 285 -SSGDGQKLCLWKYPHMT-----------KW--GELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 285 -~~~~~~~i~i~d~~~~~-----------~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
...+.+.+.+-|-.+-. ++ .++ .-..+|.+++|++++..+++-..||.|.+|.....
T Consensus 388 ~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 388 SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 00122333333322110 00 011 12467999999999988999999999999996543
No 274
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.41 E-value=2.3e-10 Score=95.95 Aligned_cols=262 Identities=11% Similarity=0.115 Sum_probs=170.5
Q ss_pred ccCCCc-cEEEEEeCCeEEEEECCCCcee--eeeeecCCCCCceEEEEcCCC--CEEEE-----EecCCcEEEEecCCcc
Q 040533 51 MDWGRN-NILAIALGLELYLWKQENGEVQ--KLLKVTGEDDFPTSISWSQDA--KTLAV-----GYMASKLQLWDAETSK 120 (364)
Q Consensus 51 ~~~~~~-~~~~~~~~~~i~iw~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~--~~l~~-----~~~dg~i~iw~~~~~~ 120 (364)
+.|+-+ .++|--....++|+++ ++... ....+. ...|....|+|.+ ..||. ....+.++||.+..+.
T Consensus 137 ~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s 213 (561)
T COG5354 137 LKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS 213 (561)
T ss_pred eeeeecchhhhhhccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC
Confidence 445543 3333335578889886 33321 111111 3568888999964 34444 3467889999998777
Q ss_pred eeeeeecCCCcEEEEEeecCCCCEEEEee-----------CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEE
Q 040533 121 LIRNLEGHDKRVATASWNHWNGHILTSGS-----------QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLA 189 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (364)
.+.+..-..-.-..+.|++ .+++|++-- .+..+.++++......+ .....++|..++|.|.++.++
T Consensus 214 ~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V--~~~~~~pVhdf~W~p~S~~F~ 290 (561)
T COG5354 214 VLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV--EKDLKDPVHDFTWEPLSSRFA 290 (561)
T ss_pred eeeeeeeEeecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeecccccce--eccccccceeeeecccCCcee
Confidence 6655433333334678888 777665421 12457888887444222 225678999999999888766
Q ss_pred EEe--CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEE
Q 040533 190 SGG--DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICG 267 (364)
Q Consensus 190 ~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~ 267 (364)
+.+ .+..+.++|++.. .... .....=..+.|+|.++++++.|-+...|.+.+||.........--......-
T Consensus 291 vi~g~~pa~~s~~~lr~N----l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~ 364 (561)
T COG5354 291 VISGYMPASVSVFDLRGN----LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSY 364 (561)
T ss_pred EEecccccceeecccccc----eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceE
Confidence 654 6788999998753 2222 2344556788999998888887766789999999877655442223344566
Q ss_pred EEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCC
Q 040533 268 LEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE 332 (364)
Q Consensus 268 ~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 332 (364)
+.|+|+++++.+...-..-..|+.+.|||+...... ..+.+.|.|.|++.-+.+.+.
T Consensus 365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred eeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 789999999988754333345899999998654322 456677777777766665544
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=1.3e-12 Score=123.91 Aligned_cols=193 Identities=17% Similarity=0.275 Sum_probs=150.8
Q ss_pred eecccCCC--ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGR--NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~--~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+..+.-+| ...++++.||.+++|....++.+......+. ..|+.+.|+.+|+.+..+..||.+.+|... .+.....
T Consensus 2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~ 2288 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW 2288 (2439)
T ss_pred eeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-Ccceecc
Confidence 44455555 3589999999999999988887666665555 899999999999999999999999999976 5666677
Q ss_pred ecCCCcEEEEEeecCCCCEEEEee---CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGS---QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
+.|+.....+.|- +..+++++ .++.+.+||..........-..|.+.++++++-|...+|++|+.+|.|++||+
T Consensus 2289 qchnk~~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFI---GSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred ccCCccccceeee---ehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeeh
Confidence 7899999999994 36666654 56789999975443323333789999999999999999999999999999998
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
+..+ .++.++. ++ .+..+++++ ..|.++||++..-..+.++..
T Consensus 2366 rqrq---l~h~~~~---------~~--~~~~f~~~s--s~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2366 RQRQ---LRHTFQA---------LD--TREYFVTGS--SEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred HHHH---HHHHhhh---------hh--hhheeeccC--cccceEEEEccccchhhcCch
Confidence 7643 3444432 33 346777765 899999999988766666543
No 276
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.7e-09 Score=94.32 Aligned_cols=237 Identities=10% Similarity=0.001 Sum_probs=141.5
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCE-EEEeeCC---CcEEEEEcccCcceeeeeecccCcEEEEEEcCCC
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHI-LTSGSQD---KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (364)
.|.+-|.+... .+.+.... ......|+| +++. ++..+.+ ..|.++|+.+++. ..+....+......|+|||
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 56666654333 34343333 778899999 7773 5544433 4688899877653 3333355556678899999
Q ss_pred CEEEEEe-CC--CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC
Q 040533 186 NLLASGG-DD--NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK 262 (364)
Q Consensus 186 ~~l~~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 262 (364)
+.++... .+ ..|.++|+..+. ...+..+........|+|+|+.++.+........|.+.|+.+++..+.....
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~----~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g 320 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKT----LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG 320 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCc----EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC
Confidence 8766543 23 468888876543 3333333333445689999988888764112236888899887764443322
Q ss_pred CCeEEEEEcCCccceeeeccCCccC---CCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC-Cc--EEE
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSG---DGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD-ET--LRF 336 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g~--i~v 336 (364)
.. ...|+|+|+.++......... ....|.+.|+.++... .+... .......|+|||+.|+..+.+ +. +.+
T Consensus 321 ~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 321 KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 22 358999999988765311000 1147889998877643 33322 223468999999987766543 33 556
Q ss_pred EEeeCCCCCcceeccCCceeeeee
Q 040533 337 WEAFGPSGSGDFVSHLDGLLSLKV 360 (364)
Q Consensus 337 w~~~~~~~~~~~~~~~~~v~~~~~ 360 (364)
.++.... ...+....+.+..-+|
T Consensus 397 ~~l~g~~-~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 397 IRLNYNK-SFLFPLKVGKIQSIDW 419 (419)
T ss_pred EecCCCe-eEEeecCCCccCCCCC
Confidence 6664432 3334333444544433
No 277
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.39 E-value=2.2e-09 Score=84.07 Aligned_cols=236 Identities=15% Similarity=0.186 Sum_probs=139.3
Q ss_pred EEEcCCCCEEEEEecCCcEEEEecCCc--ceeeee---ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee
Q 040533 93 ISWSQDAKTLAVGYMASKLQLWDAETS--KLIRNL---EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167 (364)
Q Consensus 93 ~~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 167 (364)
++.+.+|+.||+- .|..|.|-..++. ..+.+. +.....=+.++|+| ++.+||.+...|+|+++|+..... ..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EE
Confidence 5678899988887 5778888766543 122222 22334467899999 999999999999999999974331 11
Q ss_pred ee------ecccCcEEEEEEcCCC------CEEEEEeCCCeEEEEeCCC--CCCCcceEEecc---cccceeEEEEccCC
Q 040533 168 RI------NAHTAEVCGLKWSNEG------NLLASGGDDNLVHVWDHSK--MSSSKCLHRFRD---HRAAVKALAWCPYQ 230 (364)
Q Consensus 168 ~~------~~~~~~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~---~~~~v~~~~~~~~~ 230 (364)
.- ......|..|.|.+.. ..|++-..+|.++-|-+.. .+..+..+.+.- +...|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 11 1123567777776522 2566666788887776532 222333333322 36689999999988
Q ss_pred CcEEEeecCCCCCe----------EEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC
Q 040533 231 FNVLASGGGTQDGC----------IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 231 ~~~~~~~~g~~d~~----------i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
+ +|..|| ..... +..|.+-++.+-.. ...+-+...-.. ...-.+|.+.+.
T Consensus 160 ~-LLlVgG-~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk---------~v~~~~~~~~~~---------~~~~~~~~~~~~ 219 (282)
T PF15492_consen 160 R-LLLVGG-CEQNQDGMSKASSCGLTAWRILSDSPYYK---------QVTSSEDDITAS---------SKRRGLLRIPSF 219 (282)
T ss_pred C-EEEEec-cCCCCCccccccccCceEEEEcCCCCcEE---------EccccCcccccc---------ccccceeeccce
Confidence 5 544543 23321 22222222211111 000111110000 112233333332
Q ss_pred ceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceecc
Q 040533 301 TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSH 351 (364)
Q Consensus 301 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 351 (364)
+...........|..|..||||..||+...+|.|.+|++.+-+.......+
T Consensus 220 ~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 220 KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 222222234567999999999999999999999999999998877766543
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=4.5e-12 Score=120.28 Aligned_cols=198 Identities=16% Similarity=0.246 Sum_probs=160.0
Q ss_pred cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 040533 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206 (364)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 206 (364)
.+-..|.++.=+| ...+.++|+.||.+++|....++++...-..-+..|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2206 ~~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--- 2281 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--- 2281 (2439)
T ss_pred cccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC---
Confidence 3556788888888 888899999999999999988877555444555889999999999999999999999999876
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEee-cCCCCCeEEEEECCCC---eEEEEEecCCCeEEEEEcCCccceeeecc
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASG-GGTQDGCIKIWNVQKG---TCIHSVDTKAQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~g~~d~~i~i~d~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 282 (364)
+++....+.|+.....+.|-. .+++++ ..+.++.+.+||.... ..+. .-+.+.++++++.|..+.+++|+.
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred -CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCC
Confidence 456777888988888888876 344444 3446788999997542 2333 345678999999999999999854
Q ss_pred CCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 283 FSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 283 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
+|.|++||++..+.+..++. +. ...++++|+..|.++||++.....+..+.
T Consensus 2357 ------~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2357 ------KGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ------cCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999999998888777664 44 55689999999999999999988777765
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.39 E-value=4.3e-10 Score=93.64 Aligned_cols=216 Identities=13% Similarity=0.119 Sum_probs=155.9
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeee---ec---CCC---CCceEEE-EcC-CCCEEEEEecCCcEEEEecCCcceeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLK---VT---GED---DFPTSIS-WSQ-DAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~---~~---~~~---~~v~~~~-~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
...+.....|.|++||..+..+.++-. +. ... .+..-+. |++ +|++++..+ .|...|.+...+-.++.
T Consensus 278 GkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv 356 (668)
T COG4946 278 GKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQV 356 (668)
T ss_pred CcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEEc
Confidence 457777888999999998876543321 00 000 1111111 333 688888886 68899988776655443
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCC-cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDK-SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
++...|.-..+.- +++-++.|..|| .+-++|.++++ .+.+...-+.|.++..+++|++++.+.....+.+.|+.
T Consensus 357 --~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 357 --GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred --CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce--EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 4667788888877 677899999999 89999998765 55666777889999999999999999988999999998
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEee-cCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeee
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG-GGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 280 (364)
++.. ...-+...+-|+.+.|+|+++.+..+- .|.....|+++|+.+++........+.-.+-+|.|++++|.--
T Consensus 432 ngnv---~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 432 NGNV---RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred CCCe---eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 8653 222234567799999999996554432 1234567999999998887766666666778899999987643
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.36 E-value=7.7e-10 Score=85.48 Aligned_cols=263 Identities=12% Similarity=0.031 Sum_probs=167.5
Q ss_pred EEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC-----CCCEEEEEecCCcEEEEecCCccee-eeeecCCCcEEE
Q 040533 61 IALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-----DAKTLAVGYMASKLQLWDAETSKLI-RNLEGHDKRVAT 134 (364)
Q Consensus 61 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~~ 134 (364)
......+.+|+..+... .+.++. +.+.|-| ...+||.|+..|...+|...+.+.. +....|...|+-
T Consensus 48 i~~t~sv~i~~~y~N~~-~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~ 120 (344)
T KOG4532|consen 48 ISKTISVPINSHYSNPK-GIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL 120 (344)
T ss_pred ccceeeeEeccccCCch-hhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhh
Confidence 33445677888766541 111111 2344544 4468999999999999998865433 333334444433
Q ss_pred EEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccC--cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceE
Q 040533 135 ASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTA--EVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 212 (364)
+.-..+....+..++.|.++++.+++.+.. ... .|.. .+.+++++++++++++.+....|..|.+..........
T Consensus 121 ~~r~cd~~~~~~i~sndht~k~~~~~~~s~-~~~--~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~ 197 (344)
T KOG4532|consen 121 VKRYCDLKFPLNIASNDHTGKTMVVSGDSN-KFA--VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI 197 (344)
T ss_pred hhhhcccccceeeccCCcceeEEEEecCcc-cce--eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee
Confidence 222221344567788889999988875442 111 2333 38899999999999999999999999987654322222
Q ss_pred EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEE-E-----ecCCCeEEEEEcCCccc--eeeeccCC
Q 040533 213 RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHS-V-----DTKAQICGLEWNRHHKE--ILSGHGFS 284 (364)
Q Consensus 213 ~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-~-----~~~~~v~~~~~~~~~~~--l~~~~~~~ 284 (364)
......+.-.+..|+... ..+|++. +||++.|||++....... . .+.+.+..+.|++.|.. |+..
T Consensus 198 ~~a~t~D~gF~~S~s~~~-~~FAv~~--Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s---- 270 (344)
T KOG4532|consen 198 YEAPTSDHGFYNSFSEND-LQFAVVF--QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS---- 270 (344)
T ss_pred EecccCCCceeeeeccCc-ceEEEEe--cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe----
Confidence 333344445677888776 5677766 999999999987543322 1 24477999999986653 3333
Q ss_pred ccCCCCeEEEeeCCCCceeeecc-------ccc-cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 285 SSGDGQKLCLWKYPHMTKWGELQ-------HQT-SRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~~~~~~~~~-------~~~-~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
..-+.+.+.|++++.....+. .|. +.|..-.|+.++..+.+.+++ .+.=|++.+..
T Consensus 271 --Ehfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 271 --EHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred --cCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccccc
Confidence 226789999999876554432 222 347888888888777766654 34556655443
No 281
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=4.3e-09 Score=91.82 Aligned_cols=215 Identities=10% Similarity=0.043 Sum_probs=134.3
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCE-EEEEecC---CcEEEEecCCcceeeeeecCCCcEEEEEeecC
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKT-LAVGYMA---SKLQLWDAETSKLIRNLEGHDKRVATASWNHW 140 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 140 (364)
..|.+-|........+.. + .......|+|||+. ++..+.+ ..|.++|+.+++...... ..+......|+|
T Consensus 169 ~~l~~~d~dg~~~~~~~~--~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP- 242 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVK--G--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK- 242 (419)
T ss_pred ceEEEECCCCCceeEEcc--C--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-
Confidence 367777776554332222 2 36778999999985 6654433 469999998886554433 555667788999
Q ss_pred CCCEEE-EeeCC--CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCCCCcceEEe
Q 040533 141 NGHILT-SGSQD--KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD-N--LVHVWDHSKMSSSKCLHRF 214 (364)
Q Consensus 141 ~~~~l~-~~~~d--g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~ 214 (364)
+++.++ +.+.+ ..|.++|+.++. ...+..+........|+|||+.|+..+.. + .|++.|+..+.. ..+
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~----~rl 316 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV----EQV 316 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe----EeC
Confidence 776554 44444 467777876554 33333333333456899999877776632 3 677888765432 122
Q ss_pred cccccceeEEEEccCCCcEEEeecCCCC--------CeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCcc
Q 040533 215 RDHRAAVKALAWCPYQFNVLASGGGTQD--------GCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 215 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d--------~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
..... ....|+|+|+.++.+.. .. ..|.+.|+.++... .+..........|+|+|+.++.... .
T Consensus 317 t~~g~--~~~~~SPDG~~Ia~~~~--~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f~~~---~ 388 (419)
T PRK04043 317 VFHGK--NNSSVSTYKNYIVYSSR--ETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSIMFIKY---L 388 (419)
T ss_pred ccCCC--cCceECCCCCEEEEEEc--CCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEEEEEEc---c
Confidence 11111 12489999998888764 22 47889999887653 3333334446899999998876542 1
Q ss_pred CCCCeEEEeeCCC
Q 040533 287 GDGQKLCLWKYPH 299 (364)
Q Consensus 287 ~~~~~i~i~d~~~ 299 (364)
+....+.+.++..
T Consensus 389 ~~~~~L~~~~l~g 401 (419)
T PRK04043 389 GNQSALGIIRLNY 401 (419)
T ss_pred CCcEEEEEEecCC
Confidence 2234566777644
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.35 E-value=8e-10 Score=85.37 Aligned_cols=217 Identities=8% Similarity=0.040 Sum_probs=142.3
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATAS 136 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 136 (364)
+++++..|...+|...+.+. .......|...|+-+.=..+ .-.+..++.|.++++.+++-+..........-.+.+++
T Consensus 87 la~gG~~g~fd~~~~~tn~~-h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~ 165 (344)
T KOG4532|consen 87 LADGGASGQFDLFACNTNDG-HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLH 165 (344)
T ss_pred EEeccccceeeeecccCccc-ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeE
Confidence 44555789999999987664 22233344443332211111 12456677888899888875543333222223388999
Q ss_pred eecCCCCEEEEeeCCCcEEEEEcccCcceeee--eecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcc--eE
Q 040533 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTSR--INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC--LH 212 (364)
Q Consensus 137 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~ 212 (364)
+++ ++.++++.+....|..|.+......... ....++.-.+..|+.....+|++..||++.|||+|....... ..
T Consensus 166 ~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss 244 (344)
T KOG4532|consen 166 YSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS 244 (344)
T ss_pred EcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence 999 9999999999999999998766543332 223344557889999999999999999999999997644211 11
Q ss_pred EecccccceeEEEEccCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecC---------CCeEEEEEcCCccceee
Q 040533 213 RFRDHRAAVKALAWCPYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---------AQICGLEWNRHHKEILS 279 (364)
Q Consensus 213 ~~~~~~~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~ 279 (364)
+-..|++.++.+.|++.|. .++.+- .-+.+.+.|+++++..+.+... ..+..-.|+.++..+.+
T Consensus 245 trp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v 319 (344)
T KOG4532|consen 245 TRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDV 319 (344)
T ss_pred cCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccc
Confidence 2234889999999998664 344443 4678999999998766555322 12555566655555444
No 283
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.34 E-value=1.6e-09 Score=94.33 Aligned_cols=254 Identities=12% Similarity=0.044 Sum_probs=153.3
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceE-EEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEE-
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTS-ISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVA- 133 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~- 133 (364)
+.+++++.++.++.+|..+|+..-...+. ..+.+ ... .+..++.++.+|.|..||.++|+.+..+........
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLS---SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccC---ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 34666677899999999998864433322 22211 111 345677778899999999999998877654332211
Q ss_pred ----EEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccC------cEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 040533 134 ----TASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTA------EVCGLKWSN--EGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 134 ----~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~------~v~~~~~~~--~~~~l~~~~~d~~i~iwd 201 (364)
+... .+..++.+..+|.+..+|+++++.....-..... ....+.-+| .+..++.++.+|.++.+|
T Consensus 181 ~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 181 RGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred cCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 1122 2346778888899999999877643221111000 000011111 245788888899999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCC-CeEEEEEcCCccceee
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKA-QICGLEWNRHHKEILS 279 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~-~v~~~~~~~~~~~l~~ 279 (364)
..+++ .+.... . ........ .+..+++.. .+|.+..+|..+++.+.... ... ....... .+..+++
T Consensus 258 ~~tG~---~~W~~~-~-~~~~~p~~--~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~ 325 (377)
T TIGR03300 258 LRSGR---VLWKRD-A-SSYQGPAV--DDNRLYVTD---ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVV 325 (377)
T ss_pred CCCCc---EEEeec-c-CCccCceE--eCCEEEEEC---CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEE
Confidence 87653 233322 1 11122222 233555543 69999999999998876552 222 1222222 2445555
Q ss_pred eccCCccCCCCeEEEeeCCCCceeeecccccccee-EEeecCCCCEEEEEeCCCcEEEE
Q 040533 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL-ELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
+. .+|.++++|..+++.+.+++.+...+. +..+. ++ .|+.++.||.|+.|
T Consensus 326 ~~------~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 326 GD------FEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred Ee------CCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 53 399999999999999988876654332 22332 33 58889999998776
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.32 E-value=8.4e-09 Score=80.93 Aligned_cols=235 Identities=11% Similarity=0.092 Sum_probs=139.8
Q ss_pred ccEEEEEeCCeEEEEECCCCc--eeeeeeec-CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec-----
Q 040533 56 NNILAIALGLELYLWKQENGE--VQKLLKVT-GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG----- 127 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~--~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----- 127 (364)
++++|+-.|..|.|-..++.= .....+.+ .....=..++||||+.+||.+...|+|++||+... .+..+..
T Consensus 9 Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~ 87 (282)
T PF15492_consen 9 GKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFP 87 (282)
T ss_pred CcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccC
Confidence 568999999999888766532 11222222 22334578999999999999999999999998743 3333332
Q ss_pred --CCCcEEEEEeecCC-----CCEEEEeeCCCcEEEEEcccC--cce--ee--eee-cccCcEEEEEEcCCCCEEEEEeC
Q 040533 128 --HDKRVATASWNHWN-----GHILTSGSQDKSIINHDVRVS--NNV--TS--RIN-AHTAEVCGLKWSNEGNLLASGGD 193 (364)
Q Consensus 128 --~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~~~d~~~~--~~~--~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~ 193 (364)
-...|..+.|.+.. ...|++-..+|.++-|-+..+ +.. .. .+. .+...|.++.++|..++|++|+.
T Consensus 88 ~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 88 GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence 23567777775422 235666777888887776432 111 11 122 24678999999999898888875
Q ss_pred CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC------eEEEEECCCCeEEE-EEecCCCeE
Q 040533 194 DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG------CIKIWNVQKGTCIH-SVDTKAQIC 266 (364)
Q Consensus 194 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~------~i~i~d~~~~~~~~-~~~~~~~v~ 266 (364)
... +... -++....+++-..-.+.++..-+.. ..|+ +..+|.+-+.+... .......|.
T Consensus 168 ~~~------~~~~-------s~a~~~GLtaWRiL~~~Pyyk~v~~-~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~ 233 (282)
T PF15492_consen 168 EQN------QDGM-------SKASSCGLTAWRILSDSPYYKQVTS-SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF 233 (282)
T ss_pred CCC------CCcc-------ccccccCceEEEEcCCCCcEEEccc-cCccccccccccceeeccceeeeeccccCCCceE
Confidence 432 0000 0011112222222222222221111 0111 12334333322211 122356799
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccc
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS 311 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 311 (364)
.|..||+|..|++.+. +|.|.+|++++.++..+..-++.
T Consensus 234 kmSlSPdg~~La~ih~------sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 234 KMSLSPDGSLLACIHF------SGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred EEEECCCCCEEEEEEc------CCeEEEEecCcchhhcccchhhC
Confidence 9999999999999876 99999999999888777664443
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.29 E-value=1.3e-08 Score=96.67 Aligned_cols=242 Identities=16% Similarity=0.295 Sum_probs=150.6
Q ss_pred CceEEEEcCCCCEEEEEec---C---CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeC---CCcEEEEEc
Q 040533 89 FPTSISWSQDAKTLAVGYM---A---SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ---DKSIINHDV 159 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~---d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~ 159 (364)
.-..++|-.||.++|+.+. . ..++||+-+ |....+-+.-.+--.+++|.| .|+++|+.-. ...|.+|.-
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec
Confidence 4567899999999998874 3 469999965 665544443334445789999 9999998865 234556653
Q ss_pred ccCcc--eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec-ccccceeEEEEccCCCcEEEe
Q 040533 160 RVSNN--VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR-DHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 160 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~ 236 (364)
+.-+. ....+......|..+.|++++..||....|. |.+|-..+-.. -.-+.+. .....+..+.|+|.....+..
T Consensus 289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW-YLKqei~~~~~~~~~~~~Wdpe~p~~L~v 366 (928)
T PF04762_consen 289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHW-YLKQEIRFSSSESVNFVKWDPEKPLRLHV 366 (928)
T ss_pred CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEE-EEEEEEEccCCCCCCceEECCCCCCEEEE
Confidence 32111 1111223456799999999999999987665 99998665321 1111111 122334558999987765555
Q ss_pred ecCCCCCeEEEEECC----C----------------CeE----------------EEEEecCCCeEEEEEcCCccceeee
Q 040533 237 GGGTQDGCIKIWNVQ----K----------------GTC----------------IHSVDTKAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~----~----------------~~~----------------~~~~~~~~~v~~~~~~~~~~~l~~~ 280 (364)
.. .+|.+..++.. . |.. ...+....+|..++|++++..+++-
T Consensus 367 ~t--~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl 444 (928)
T PF04762_consen 367 LT--SNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVL 444 (928)
T ss_pred Ee--cCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEE
Confidence 44 44555544431 1 111 1222345679999999998766655
Q ss_pred ccCCccCCCCeEEEeeCCCCcee--------eecc----------ccccceeEEeecCCCCEEEEEeCC---CcEEEEEe
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKW--------GELQ----------HQTSRILELSQSPDGLTVVSAAAD---ETLRFWEA 339 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~--------~~~~----------~~~~~i~~i~~~~~~~~l~~~~~d---g~i~vw~~ 339 (364)
.. +|.|.+|........ ..+. .....+..++|..+..+++....+ ..+.++++
T Consensus 445 ~~------d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (928)
T PF04762_consen 445 TS------DGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI 518 (928)
T ss_pred EC------CCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence 43 999999985443211 1111 123457888888887766666554 67888887
Q ss_pred eCC
Q 040533 340 FGP 342 (364)
Q Consensus 340 ~~~ 342 (364)
...
T Consensus 519 ~~~ 521 (928)
T PF04762_consen 519 DDS 521 (928)
T ss_pred ccC
Confidence 543
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.29 E-value=5.1e-08 Score=79.58 Aligned_cols=218 Identities=14% Similarity=0.137 Sum_probs=143.2
Q ss_pred EEEEcC-CCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee
Q 040533 92 SISWSQ-DAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN 170 (364)
Q Consensus 92 ~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 170 (364)
+++|.+ ++.++++-...+.|..|+..+++... +.... ...+++...+ ..|+.+... .+.++|+.+++. .....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~-~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKV-TVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETT-CEEEEETTTTEE-EEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcC-ceEEEecCCCcE-EEEee
Confidence 678988 66666776678999999998776533 33222 6777777315 445555554 455568877642 22222
Q ss_pred c-----ccCcEEEEEEcCCCCEEEEEeCC--------CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEee
Q 040533 171 A-----HTAEVCGLKWSNEGNLLASGGDD--------NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 171 ~-----~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
. .....+.+++.|+|++.++.... |.|..++.. .. +......-...+.++|+|+++.++++-
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~----~~~~~~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK----VTVVADGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE----EEEEEEEESSEEEEEEETTSSEEEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce----EEEEecCcccccceEECCcchheeecc
Confidence 1 34568899999999977776543 557777754 21 233333345568999999998888776
Q ss_pred cCCCCCeEEEEECCCC-e-E--EEEE-e--cC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 238 GGTQDGCIKIWNVQKG-T-C--IHSV-D--TK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 238 ~g~~d~~i~i~d~~~~-~-~--~~~~-~--~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
+ ..+.|..+++... . . ...+ . .. +..-.+++..+|+..++... .+.|.+++.. ++.+..+...
T Consensus 153 s--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~------~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 153 S--FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG------GGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp T--TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET------TTEEEEEETT-SCEEEEEE-S
T ss_pred c--ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC------CCEEEEECCC-ccEEEEEcCC
Confidence 5 7889999998532 1 1 1222 2 22 24788999999998877544 8999999977 8888887766
Q ss_pred ccceeEEeec-CCCCEEEEEe
Q 040533 310 TSRILELSQS-PDGLTVVSAA 329 (364)
Q Consensus 310 ~~~i~~i~~~-~~~~~l~~~~ 329 (364)
...+++++|. ++.+.|+..+
T Consensus 224 ~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEe
Confidence 5689999994 6666665543
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.28 E-value=1.5e-08 Score=98.14 Aligned_cols=229 Identities=10% Similarity=0.086 Sum_probs=144.8
Q ss_pred EeCCeEEEEECCCCceeeeeeec-----------CCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcceeeeeecC-
Q 040533 62 ALGLELYLWKQENGEVQKLLKVT-----------GEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKLIRNLEGH- 128 (364)
Q Consensus 62 ~~~~~i~iw~~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~- 128 (364)
..++.|+++|.........-... ..-.....+++.++++.|+++. .++.|+++|..++. +.++.+.
T Consensus 587 s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G 665 (1057)
T PLN02919 587 SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNG 665 (1057)
T ss_pred CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccC
Confidence 35678999997654322111100 0123468899999888766654 45779999987754 3333110
Q ss_pred ----------------CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec---------------ccCcEE
Q 040533 129 ----------------DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA---------------HTAEVC 177 (364)
Q Consensus 129 ----------------~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---------------~~~~v~ 177 (364)
-..-..++++|.++.++++.+.++.|++||..++.. ..+.+ .-....
T Consensus 666 ~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~ 743 (1057)
T PLN02919 666 TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPS 743 (1057)
T ss_pred cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE--EEEecCCccccCCCCccccccccCcc
Confidence 112357899985566777777888999999876532 11111 112356
Q ss_pred EEEEcCCCCEE-EEEeCCCeEEEEeCCCCCCCcc----------eEEecc--------cccceeEEEEccCCCcEEEeec
Q 040533 178 GLKWSNEGNLL-ASGGDDNLVHVWDHSKMSSSKC----------LHRFRD--------HRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 178 ~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~----------~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
.++++|+++.| ++-+.++.|++||+.+...... ...+.. .-.....++++++|. ++++..
T Consensus 744 GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs 822 (1057)
T PLN02919 744 GISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADS 822 (1057)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEEC
Confidence 79999998844 4555678999999875431000 000000 011245889999984 666654
Q ss_pred CCCCCeEEEEECCCCeEEEEEecC--------------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 239 GTQDGCIKIWNVQKGTCIHSVDTK--------------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
.++.|++||..++......... .....++++++|+.+++.. .++.|++||+.+++.
T Consensus 823 --~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt------~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 823 --YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT------NNSLIRYLDLNKGEA 892 (1057)
T ss_pred --CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC------CCCEEEEEECCCCcc
Confidence 7899999999887665433211 2467899999998666553 389999999988764
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=4.5e-11 Score=101.31 Aligned_cols=245 Identities=16% Similarity=0.190 Sum_probs=158.6
Q ss_pred eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC-------cceeeeeecCCCcEEEEEeecCCCCEEEEeeC
Q 040533 78 QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET-------SKLIRNLEGHDKRVATASWNHWNGHILTSGSQ 150 (364)
Q Consensus 78 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 150 (364)
..+..+.+|...|..++--.+.+.+++++.|.+|++|.++. ..+..+++.|+.+|..+-|-. +.+.+++ .
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S--c 802 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS--C 802 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--c
Confidence 34556679999999888777888899999999999999863 235667889999999999987 6666665 4
Q ss_pred CCcEEEEEcccCcceeeeeec----ccCcEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCCCcceEEe--cccccceeE
Q 040533 151 DKSIINHDVRVSNNVTSRINA----HTAEVCGLKWSNEGNLLAS-GGDDNLVHVWDHSKMSSSKCLHRF--RDHRAAVKA 223 (364)
Q Consensus 151 dg~i~~~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~ 223 (364)
||.|.+||.--+..+...... ..+.|.++. +-+...+.. ++...+|+++|.+..+.....+.. .+.+..+++
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 789999998766543322211 123344432 113344444 478899999998875442222222 234567899
Q ss_pred EEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEE-eeCCCCc
Q 040533 224 LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCL-WKYPHMT 301 (364)
Q Consensus 224 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i-~d~~~~~ 301 (364)
++..|.|+.+.+.- ..|.|.+.|.++|+.+.....- .....++ .|..+.++.... |..+.+ |..-++.
T Consensus 882 iaVa~~GN~lAa~L---SnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal------dHslaVnWhaldgi 951 (1034)
T KOG4190|consen 882 IAVADKGNKLAAAL---SNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL------DHSLAVNWHALDGI 951 (1034)
T ss_pred EEeccCcchhhHHh---cCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc------cceeEeeehhcCCe
Confidence 99999996655533 6999999999999988765321 1222222 244455554432 777777 8766665
Q ss_pred eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 302 KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 302 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
...+.+....+..-+ ..-|..|+++...+.+.+|.
T Consensus 952 mh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 952 MHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred eeeccCCCCcchhhh--hccCceeEEeccCcEEEEEe
Confidence 555544333322211 12355677777666777774
No 289
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.28 E-value=1.6e-09 Score=86.66 Aligned_cols=251 Identities=14% Similarity=0.207 Sum_probs=175.8
Q ss_pred eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec-CCcceeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEE
Q 040533 78 QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA-ETSKLIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 78 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
..+..++||.+.+++...-|...-+++.+.|.+++||-- +.++.-..+. ....+++++.+.+ +...|++|-..|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-cceEEEEEEecceEE
Confidence 334556699999999999888888999999999999963 3444433332 3457889999999 889999999999998
Q ss_pred EEEcccC---cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 156 NHDVRVS---NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 156 ~~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
-+.+... ....+....|...+..+-|+...+++++.+.|..+.---.+.+.. +-.+.- ...-.++.+.-.
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~---lg~Y~~-~~~~t~~~~d~~--- 166 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR---LGGYNF-ETPASALQFDAL--- 166 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc---ccceEe-eccCCCCceeeE---
Confidence 8866432 223455668999999999999888999999887665333222211 111000 001111111111
Q ss_pred EEEeecCCCCCeEEEEECCC--CeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-eeeccc
Q 040533 233 VLASGGGTQDGCIKIWNVQK--GTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-WGELQH 308 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~ 308 (364)
.... |...|.|..-.+.. -.++..+.. ...+.+++|.+....++++.. |..+.+||+.-.+- ..++.+
T Consensus 167 ~~fv--Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~------d~~vi~wdigg~~g~~~el~g 238 (404)
T KOG1409|consen 167 YAFV--GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS------DHSVIMWDIGGRKGTAYELQG 238 (404)
T ss_pred EEEe--cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc------cCceEEEeccCCcceeeeecc
Confidence 1122 33556665554432 344555543 478999999999999998855 99999999976543 456788
Q ss_pred cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 309 QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
|...|..+..-+--+.|++++.||.|.+|+++....
T Consensus 239 h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 239 HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred chhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 999999999888888999999999999999876543
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.28 E-value=1.2e-10 Score=94.66 Aligned_cols=166 Identities=15% Similarity=0.179 Sum_probs=119.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC-CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe
Q 040533 176 VCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS-SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254 (364)
Q Consensus 176 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 254 (364)
...+..++.++++|++..+....+++++.... .+.+.... -...-+++.|..+....++.-.......+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34556778888999998888877777765432 12222221 22233455555555455554321255667777766677
Q ss_pred EEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-ccccceeEEeecCCCCEEEEEeCCCc
Q 040533 255 CIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-HQTSRILELSQSPDGLTVVSAAADET 333 (364)
Q Consensus 255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~ 333 (364)
+...+.+-+-+..++|+||+++++++.. |..|++-..+....+..+- +|..-|..++.-++ ..|+++|.|++
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDR------DEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t 216 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADR------DEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT 216 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecC------CceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc
Confidence 7777777788999999999999999865 9999998888777666654 69999999998765 46899999999
Q ss_pred EEEEEeeCCCCCccee
Q 040533 334 LRFWEAFGPSGSGDFV 349 (364)
Q Consensus 334 i~vw~~~~~~~~~~~~ 349 (364)
|++||+.+++.+.++.
T Consensus 217 lr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 217 LRLWDITSGKLLDTCD 232 (390)
T ss_pred EEEEecccCCcccccc
Confidence 9999999999987654
No 291
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.8e-10 Score=91.94 Aligned_cols=261 Identities=12% Similarity=0.141 Sum_probs=164.2
Q ss_pred EEEEECCCCceeeeeeecCCCCCceEEEEcCCCC-EEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEE
Q 040533 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHIL 145 (364)
Q Consensus 67 i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 145 (364)
+++.+..+.+..+ -++++...|.+++|||..+ ++..++.+.+|.|.|+++...+..+..+ ..+++++|.-++.+++
T Consensus 175 v~~l~~~~fkssq--~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ--ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred eEEeccCCcchhh--cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence 5555554444333 4558889999999999776 7888889999999999999999888877 7899999998778899
Q ss_pred EEeeCCCcEEEEEcccCcceeeeeec--ccCcEEEEEEc------CCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc
Q 040533 146 TSGSQDKSIINHDVRVSNNVTSRINA--HTAEVCGLKWS------NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH 217 (364)
Q Consensus 146 ~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~v~~~~~~------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 217 (364)
.+|..+|.|.+||++..+.....+.+ ...+|..++.- +.+.+|+....+ +..|++.......+...-.+.
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~ 329 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEP 329 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCC
Confidence 99999999999999987654443333 22344444332 234455544433 566765533221111111234
Q ss_pred ccceeEEEEccCCCcEEEeecCCCCC------eEE-EEECCCCeEEEEEec---CCC------eEEEEEcCCccceeeec
Q 040533 218 RAAVKALAWCPYQFNVLASGGGTQDG------CIK-IWNVQKGTCIHSVDT---KAQ------ICGLEWNRHHKEILSGH 281 (364)
Q Consensus 218 ~~~v~~~~~~~~~~~~~~~~~g~~d~------~i~-i~d~~~~~~~~~~~~---~~~------v~~~~~~~~~~~l~~~~ 281 (364)
.+...+++.++-.+.++++.- .+. .+- --|..+|.++..... ++. -..+.-.++..+++..
T Consensus 330 pG~cismqy~~~snh~l~tyR--s~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~- 406 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYR--SNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV- 406 (463)
T ss_pred CcceeeeeecCccceEEEEec--CCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEe-
Confidence 566778888887778888763 210 111 112233433322211 111 1112223344444432
Q ss_pred cCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC-CC-CEEEEEeCCCcEEEEEeeC
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP-DG-LTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~-~~l~~~~~dg~i~vw~~~~ 341 (364)
+++.+.+.+||..+++.+..+.-. .+|.+++... +| .+|++- .|..++||..++
T Consensus 407 ----gd~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 407 ----GDSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred ----cCCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 245789999999999999988754 7788877654 33 355554 456788887553
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=3.2e-11 Score=102.14 Aligned_cols=207 Identities=14% Similarity=0.252 Sum_probs=149.2
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc------ceeeeeecccCcEEEEEEcCCCCEEEEEeCCC
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN------NVTSRINAHTAEVCGLKWSNEGNLLASGGDDN 195 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 195 (364)
+..+.+|...|..++--. +.+-+++++.|.+|++|.++... ....++..|+.+|.++.|-.+.++++++ ||
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 456778999998887766 88899999999999999987543 1345678899999999999988888765 78
Q ss_pred eEEEEeCCCCCCCcceEEec--ccccceeEEEEccC-CCcEEEeecCCCCCeEEEEECCCCeEEEEEec------CCCeE
Q 040533 196 LVHVWDHSKMSSSKCLHRFR--DHRAAVKALAWCPY-QFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT------KAQIC 266 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~------~~~v~ 266 (364)
-|.+||.-.+ +++.... ...+.+..+..-|+ .+.++..+ .+...+|+++|.+.++-...++. ...+.
T Consensus 805 giHlWDPFig---r~Laq~~dapk~~a~~~ikcl~nv~~~iliAg-csaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 805 GIHLWDPFIG---RLLAQMEDAPKEGAGGNIKCLENVDRHILIAG-CSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cceeeccccc---chhHhhhcCcccCCCceeEecccCcchheeee-ccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 8999995332 2222111 12233334444344 33455444 24789999999999876655542 14488
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEE-EEeeCC
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRF-WEAFGP 342 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~v-w~~~~~ 342 (364)
+++..+.|+.++++-. +|+|.+.|.++|+.+..++...-....++- |..+.|+....|.++.+ |....+
T Consensus 881 ~iaVa~~GN~lAa~LS------nGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALS------NGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred EEEeccCcchhhHHhc------CCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC
Confidence 9999999999998865 999999999999999887766555555543 55567777777777777 765443
No 293
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=1.3e-11 Score=110.02 Aligned_cols=218 Identities=16% Similarity=0.256 Sum_probs=156.3
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC--cEEEEE
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK--SIINHD 158 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~~~d 158 (364)
..+..|....+|++|+-+.+.|+.|+..|.|++|++.+|.......+|..+|+.+.=+. ++..+++.+.-. -..+|+
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHHHhc
Confidence 34557888999999999999999999999999999999999999999999999999888 777666554333 467899
Q ss_pred cccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEE-ec---ccccceeEEEEccCCCcEE
Q 040533 159 VRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR-FR---DHRAAVKALAWCPYQFNVL 234 (364)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~---~~~~~v~~~~~~~~~~~~~ 234 (364)
+.+.......+ ..-.++.|+.....-+.|.......+||+.+... +.+ +. +....-.+..|+|.. .++
T Consensus 1174 ~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~---l~tylt~~~~~~y~~n~a~FsP~D-~LI 1245 (1516)
T KOG1832|consen 1174 ASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSP---LQTYLTDTVTSSYSNNLAHFSPCD-TLI 1245 (1516)
T ss_pred cccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcH---HHHhcCcchhhhhhccccccCCCc-ceE
Confidence 87644333333 2345788887554445555556789999887543 332 11 122233678899988 455
Q ss_pred EeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccccee
Q 040533 235 ASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL 314 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 314 (364)
. .|| .+||.+..+.++.+..-..-..-.|+|.|..++..+ .|||+++.+.+.....-.. .
T Consensus 1246 l-----ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----------EIwD~RTF~lLh~VP~Ldq--c 1305 (1516)
T KOG1832|consen 1246 L-----NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----------EIWDMRTFKLLHSVPSLDQ--C 1305 (1516)
T ss_pred e-----eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----------hhhhhHHHHHHhcCccccc--e
Confidence 5 466 589999887777765433333447899999888743 4899999888877654332 4
Q ss_pred EEeecCCCCEEEE
Q 040533 315 ELSQSPDGLTVVS 327 (364)
Q Consensus 315 ~i~~~~~~~~l~~ 327 (364)
.+.|+..|..++.
T Consensus 1306 ~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYA 1318 (1516)
T ss_pred EEEeccCccchhh
Confidence 6778887776554
No 294
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=8.3e-09 Score=91.19 Aligned_cols=240 Identities=13% Similarity=0.195 Sum_probs=169.7
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCC-----------CCEEEEeeCCCcEEE
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWN-----------GHILTSGSQDKSIIN 156 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~l~~~~~dg~i~~ 156 (364)
..-.++.|+|.| ++|.|+ ...|.+-|..+-+.++.++.|...|+.+.|.|.. .-+|+++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 335688899877 678876 4579999999999999999999999999998721 236788888999999
Q ss_pred EEcccCcceeeeeecccCcEEEEEEcC---CC-CEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 157 HDVRVSNNVTSRINAHTAEVCGLKWSN---EG-NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
||...... ...+..|..++..++|-+ +. ..|+.-.....+.+|+..+++. ..+.........|+.+.|.+..
T Consensus 94 ~d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k---~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 94 VDFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK---FWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred EEehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce---eeccccCCcceeeeeeCCCCcc
Confidence 99987664 556778889999999976 33 4666667778999999777543 5555544556777999987654
Q ss_pred EEEeecCCCCCeEEEEECCC-------CeEEEEEecCC------------------C--------eEEEEEcCCccceee
Q 040533 233 VLASGGGTQDGCIKIWNVQK-------GTCIHSVDTKA------------------Q--------ICGLEWNRHHKEILS 279 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~-------~~~~~~~~~~~------------------~--------v~~~~~~~~~~~l~~ 279 (364)
-+..-+ ..|.+.+-+.-. ++..+.-..++ + ...++|+|.-+.++.
T Consensus 170 h~~~l~--s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf 247 (1062)
T KOG1912|consen 170 HFCVLG--SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF 247 (1062)
T ss_pred eEEEEc--cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE
Confidence 444433 477777766532 22222211100 0 113456775443332
Q ss_pred eccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCC--CEEEEEeCCCcEEEEEeeC
Q 040533 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG--LTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg~i~vw~~~~ 341 (364)
..- ...+.++|++-..++....-..+.+.-+.+-|++ ..|++.-.||.+.+|--+.
T Consensus 248 i~~------prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 248 ITF------PRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEe------ccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 211 7889999999888888877666666667777765 4799999999999998765
No 295
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.19 E-value=3.7e-10 Score=86.77 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=100.8
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeec-CCCCCceEEEEcCCCCEEEEEe-----cCCcEEEEecCCcceeeeeecCC
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVT-GEDDFPTSISWSQDAKTLAVGY-----MASKLQLWDAETSKLIRNLEGHD 129 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~ 129 (364)
.+++.+..||.+.+++.+.-.. ...+.. .|.+ -.+.+....++.+.++. .-+..++|+++..+....-....
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~-~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLA-LMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred CceEecCCCceEEEEechHHHh-hhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 4677788899999998765211 111111 1111 12233333555555543 12345566655433322222223
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 204 (364)
..|.+++-+|...+++++|+.||.+-+||.+....+...+..|+.+++.+.|+| ++..|+++++||.+..||...
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 459999999977788899999999999999988777788889999999999999 677999999999999999663
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.19 E-value=7.1e-08 Score=78.74 Aligned_cols=213 Identities=11% Similarity=0.088 Sum_probs=139.8
Q ss_pred EEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCCCCcceE
Q 040533 134 TASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS-NEGNLLASGGDDNLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 212 (364)
++.|.+.++.++++--..+.|..|+..++.... +... . ...+++. +++ .++.+...+ +.++|..+.+. +.+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~-~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~-~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLP-G-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKV-TVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESS-S-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEE-EEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecC-C-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcE-EEEe
Confidence 568887566777777778999999988665322 2222 2 6777888 565 555555554 55668776532 2233
Q ss_pred Eec--c-cccceeEEEEccCCCcEEEeecCCCC------CeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccC
Q 040533 213 RFR--D-HRAAVKALAWCPYQFNVLASGGGTQD------GCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 213 ~~~--~-~~~~v~~~~~~~~~~~~~~~~~g~~d------~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
... . .....+.+++.|+|. +.++..+... |.|..++.. ++.......-...+.++|+|+++.|+...
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~d-- 152 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVAD-- 152 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEE--
T ss_pred eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecc--
Confidence 321 1 345678999999996 5554331111 668888887 66555555556688999999999887654
Q ss_pred CccCCCCeEEEeeCCCCce-------eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCcee
Q 040533 284 SSSGDGQKLCLWKYPHMTK-------WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLL 356 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~-------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~ 356 (364)
+..+.|..+++..... ...+....+..-.+++.++|++.++.-..+.|.+++.. ++.+..+......++
T Consensus 153 ---s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t 228 (246)
T PF08450_consen 153 ---SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPT 228 (246)
T ss_dssp ---TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEE
T ss_pred ---cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEE
Confidence 3378899999853222 12222222347789999999988888888999999977 777777766556899
Q ss_pred eeeec
Q 040533 357 SLKVS 361 (364)
Q Consensus 357 ~~~~s 361 (364)
+++|.
T Consensus 229 ~~~fg 233 (246)
T PF08450_consen 229 NCAFG 233 (246)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99994
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.19 E-value=8.3e-10 Score=89.98 Aligned_cols=163 Identities=15% Similarity=0.228 Sum_probs=111.7
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcce---eeeeecCCCcEEEEEeecCCCCEEEEeeCCC---cEEEEEcccC
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKL---IRNLEGHDKRVATASWNHWNGHILTSGSQDK---SIINHDVRVS 162 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~ 162 (364)
.+..+..++.+++||++..+....++++..... ......-...-+++.|.. +......+..-| .+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeeccccc
Confidence 344566788899999998888877777654432 111111233344555554 444444444444 4445554432
Q ss_pred cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEe-cccccceeEEEEccCCCcEEEeecCCC
Q 040533 163 NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQ 241 (364)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~ 241 (364)
......+|-..+..++|+||+++++++..|..|++-....... +..+ .+|...|..++.-++ +.|++++ -
T Consensus 143 --~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~---IesfclGH~eFVS~isl~~~--~~LlS~s--G 213 (390)
T KOG3914|consen 143 --RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV---IESFCLGHKEFVSTISLTDN--YLLLSGS--G 213 (390)
T ss_pred --CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc---hhhhccccHhheeeeeeccC--ceeeecC--C
Confidence 2445668999999999999999999999999999977654322 3333 469999999999886 4566665 4
Q ss_pred CCeEEEEECCCCeEEEEEec
Q 040533 242 DGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 242 d~~i~i~d~~~~~~~~~~~~ 261 (364)
|++|++||+.+|+.+.++..
T Consensus 214 D~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CCcEEEEecccCCcccccch
Confidence 99999999999999877653
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.16 E-value=4.6e-08 Score=85.67 Aligned_cols=275 Identities=8% Similarity=-0.033 Sum_probs=157.2
Q ss_pred CccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCce-----EEEEcC--CCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 55 RNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPT-----SISWSQ--DAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 55 ~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~-----~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
.+.+++.+.++.+.-+|.++|+..=...+........ .+.-.| ++..++.++.+|.+.-+|.++|+.+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 3456777778999999999988644333322110000 000011 355677888899999999999998877664
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN--EGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.......... .+..++.+..++.+..+|.++++.................-+| .+..++.++.++.+..+|..++
T Consensus 149 ~~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G 225 (394)
T PRK11138 149 AGEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQG 225 (394)
T ss_pred CCceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCC
Confidence 3322222222 3456677788899999999888754332211100000000112 1235667778899998887765
Q ss_pred CCCcceEEecc--cc--c---ceeEEEEcc--CCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccc
Q 040533 206 SSSKCLHRFRD--HR--A---AVKALAWCP--YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKE 276 (364)
Q Consensus 206 ~~~~~~~~~~~--~~--~---~v~~~~~~~--~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~ 276 (364)
+. +..... .. . ....+.-+| .+..+++.+ .+|.+..+|..+|+.+........ ..+.. .+..
T Consensus 226 ~~---~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~-~~~~~--~~~~ 296 (394)
T PRK11138 226 QL---IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA---YNGNLVALDLRSGQIVWKREYGSV-NDFAV--DGGR 296 (394)
T ss_pred hh---hheeccccCCCccchhcccccCCCcEEECCEEEEEE---cCCeEEEEECCCCCEEEeecCCCc-cCcEE--ECCE
Confidence 43 221110 00 0 000111111 133455543 589999999999988766543221 11222 2333
Q ss_pred eeeeccCCccCCCCeEEEeeCCCCceeeeccccc-cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT-SRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
++.+ +.++.+..+|..+++.+.....-. ....+... .+.+|+.++.||.|.+.|..+++.+....
T Consensus 297 vy~~------~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 297 IYLV------DQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred EEEE------cCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 4443 338999999999988765443211 11222222 24578889999999999999988766554
No 299
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=3.6e-09 Score=94.33 Aligned_cols=296 Identities=16% Similarity=0.230 Sum_probs=172.7
Q ss_pred eeecccCCCc-cEEEEEe-----CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc
Q 040533 47 YSNMMDWGRN-NILAIAL-----GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 47 ~~~~~~~~~~-~~~~~~~-----~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 120 (364)
..+..+|+|. -+++++. .|.|.||- ++|++..-.+.+- .+++++|+|..-.|+.|-.-|.+.+|...+.+
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce---ehhhhccChHHHHHhhccccceeEEEecCCce
Confidence 3566789995 4666553 58898884 5666544444433 36779999998889999999999999988877
Q ss_pred eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee-eeeeccc--C--cEEEEEEcCCCC------EEE
Q 040533 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT-SRINAHT--A--EVCGLKWSNEGN------LLA 189 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~--~--~v~~~~~~~~~~------~l~ 189 (364)
.......|..+|..+.|+| +|..++++..-|.+.+|.....+... ..+..|. . ...|...++++. ..+
T Consensus 93 ~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaa 171 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAA 171 (1416)
T ss_pred eeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhh
Confidence 7777778999999999999 99999999999999999877433211 1111222 1 234455566532 233
Q ss_pred EEeCCCeEE-EEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCC----
Q 040533 190 SGGDDNLVH-VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ---- 264 (364)
Q Consensus 190 ~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~---- 264 (364)
+.+++..+- .++.+.... .... .+. =.|+|..+++++ .+|+|+..|- +|++....+.++.
T Consensus 172 VtgDe~alD~~fnwk~~~a---~rs~-~ks-------gv~~g~~F~~~~---~~GtVyyvdq-~g~~~~V~k~dS~vQmL 236 (1416)
T KOG3617|consen 172 VTGDESALDEPFNWKESLA---ERSD-EKS-------GVPKGTEFLFAG---KSGTVYYVDQ-NGRQRTVHKLDSEVQML 236 (1416)
T ss_pred ccCchhhhcccccCccchh---hccc-ccc-------CCCCCcEEEEEc---CCceEEEEcC-CCcEEEEEEccchHHHH
Confidence 444444332 333221100 0000 111 135665555554 7999988884 4555555444332
Q ss_pred -------eEEE-EEcCCccceeeeccC-----------CccCCCCeEEEeeCCCCceeee---c-cccccceeEEeecCC
Q 040533 265 -------ICGL-EWNRHHKEILSGHGF-----------SSSGDGQKLCLWKYPHMTKWGE---L-QHQTSRILELSQSPD 321 (364)
Q Consensus 265 -------v~~~-~~~~~~~~l~~~~~~-----------~~~~~~~~i~i~d~~~~~~~~~---~-~~~~~~i~~i~~~~~ 321 (364)
+..+ .+..+.-+++-..+. -.++..|.|..=... | .+.. + ......+++++++..
T Consensus 237 f~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss-G-vLr~~eKyg~e~ge~~~c~cY~~~ 314 (1416)
T KOG3617|consen 237 FMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS-G-VLRKSEKYGLELGEGILCMCYGEK 314 (1416)
T ss_pred HhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc-c-cccCCcchhhhcCCceEEEEEecc
Confidence 1111 111111111111000 011222222221111 1 1100 0 012356899999999
Q ss_pred CCEEEEEeCCCcEEEEEeeCCCCC-------ccee---ccCCceeeeeeccCC
Q 040533 322 GLTVVSAAADETLRFWEAFGPSGS-------GDFV---SHLDGLLSLKVSPIR 364 (364)
Q Consensus 322 ~~~l~~~~~dg~i~vw~~~~~~~~-------~~~~---~~~~~v~~~~~sp~~ 364 (364)
+..|+.|...|.+.+|.-.....+ ..+. ...+.|+.+.|+|++
T Consensus 315 ~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k 367 (1416)
T KOG3617|consen 315 EIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIK 367 (1416)
T ss_pred ceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEecccc
Confidence 999999999999999974433221 1222 336679999999964
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.11 E-value=1.1e-09 Score=96.03 Aligned_cols=206 Identities=17% Similarity=0.302 Sum_probs=150.4
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee-cccCcEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN-AHTAEVCGLKWSNEG--NLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~ 205 (364)
.+++.++..+| .++-++.++.-| +.+.|+.........+. ...-.|....|+|.. .+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 45678889999 888888887766 45566665443333221 112346677888743 24444444556678998877
Q ss_pred CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-EEEEEe-cCCCeEEEEEcCCccceeeeccC
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT-CIHSVD-TKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
.....-..+.+|...|+.+.|+|+.+.++++++ .|-.+..||+++.. ++.... -+.....+.|+-....+++..
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcs--vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass-- 177 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCS--VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS-- 177 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeecc--ccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc--
Confidence 666666777889999999999999999999987 89999999999853 344433 246677889987666555543
Q ss_pred CccCCCCeEEEeeCCCC-ceeeeccccccceeEEeecCC-CCEEEEEeCCCcEEEEEeeCCCC
Q 040533 284 SSSGDGQKLCLWKYPHM-TKWGELQHQTSRILELSQSPD-GLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
..+.|.+||.+.+ .++..+++|...|..++|..- ...+.+.+.||+|++||......
T Consensus 178 ----hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 178 ----HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred ----cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence 3889999999765 567788889999999998763 34688899999999999886554
No 301
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=8.7e-09 Score=85.43 Aligned_cols=269 Identities=14% Similarity=0.126 Sum_probs=178.5
Q ss_pred ccEEEEEeCCeEEEEECCC-CceeeeeeecCCCCCceEEEEcCCCCEEEEEec-CCcEEEEecCCcceeeeeecCCCcEE
Q 040533 56 NNILAIALGLELYLWKQEN-GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM-ASKLQLWDAETSKLIRNLEGHDKRVA 133 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~ 133 (364)
+-++.++.||.++.|.-.. .-..-+..+..|-..|.+++.+-++..+.+.+. |..++++|+++-..+.-++.-. .-.
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-lPg 99 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD-LPG 99 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc-CCC
Confidence 4578899999999998665 222333444578889999999999999999777 9999999998766553333111 111
Q ss_pred EEEeecCCC---CEEE-EeeCCCcEEEEEcccCcc-eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-CC
Q 040533 134 TASWNHWNG---HILT-SGSQDKSIINHDVRVSNN-VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM-SS 207 (364)
Q Consensus 134 ~~~~~~~~~---~~l~-~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~ 207 (364)
.+.|....+ ..++ +.-.+|.+.++|-....+ ....-.-|..+|.++.+++.+..+++....|.|.-|..... +.
T Consensus 100 ~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 100 FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence 223322123 1333 334678999999776553 23344468999999999999999999999999999987631 00
Q ss_pred --C---------cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--------------
Q 040533 208 --S---------KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-------------- 262 (364)
Q Consensus 208 --~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-------------- 262 (364)
. .-+..+........++.|+|++..+-..+ .|..|++++.++|+.++.++..
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~---~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l 256 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN---PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGL 256 (558)
T ss_pred ccccccccccccchhhcccccccCccceEEccccCcccccC---cccEEEEEEeccchhhhhhhccchhhhhcccccccc
Confidence 0 01112222345678999999996555443 7999999999998766554210
Q ss_pred --------------------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc-------------
Q 040533 263 --------------------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ------------- 309 (364)
Q Consensus 263 --------------------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~------------- 309 (364)
..-+.+.|...|++|+-+. --.|++.++.+++..+.+-..
T Consensus 257 ~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t-------~~gikvin~~tn~v~ri~gk~e~ir~~~~sl~q~ 329 (558)
T KOG0882|consen 257 MHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT-------ILGIKVINLDTNTVVRILGKDEAIRFTRLSLYQG 329 (558)
T ss_pred ceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec-------ceeEEEEEeecCeEEEEeccchhhhhhhHHHHhh
Confidence 1234577888888888765 345778888777665543211
Q ss_pred --------------ccceeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 310 --------------TSRILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 310 --------------~~~i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
.++ .+.+.+|-.+++++-....++++
T Consensus 330 ~~k~~~~~~~~~a~~np--~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 330 AQKSNLAALEVAASNNP--LLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hhhccchhhhhhhccCc--ccccCCCCeEEEeeeecceEEEE
Confidence 111 22355666677777777778777
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.10 E-value=3.6e-09 Score=81.46 Aligned_cols=153 Identities=16% Similarity=0.322 Sum_probs=99.5
Q ss_pred EEcCCCCEEEEEecCCcEEEEecCCccee-eeeecCCCcEEEEEeecCCCCEEEEeeC-----CCcEEEEEcccCcceee
Q 040533 94 SWSQDAKTLAVGYMASKLQLWDAETSKLI-RNLEGHDKRVATASWNHWNGHILTSGSQ-----DKSIINHDVRVSNNVTS 167 (364)
Q Consensus 94 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~ 167 (364)
+.+-.++.++++..||.+.+++.+.-..+ ..+..-...-.+.+... .++.+.++.- -+..+.|+++....+..
T Consensus 96 ~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~ 174 (319)
T KOG4714|consen 96 ACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIP 174 (319)
T ss_pred cccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceee-cccEEecCCcceEeeccceeeecccccccccc
Confidence 33445678999999999999997652111 11111111111122222 3444444321 23456677664443322
Q ss_pred eeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEE
Q 040533 168 RINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIK 246 (364)
Q Consensus 168 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 246 (364)
.... ...|.+++-+| +.+.+++|+.||.+.+||.++.. .+...+..|..+++.+-|+|..+.-|.+++ +||.+.
T Consensus 175 ~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~--~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s--edGslw 249 (319)
T KOG4714|consen 175 SKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA--MPVSLLKAHKAEIWEVHFHPKNPEHLFTCS--EDGSLW 249 (319)
T ss_pred cccc-cccchhhhCCcccccEEEEecCCCeEEEEEccccc--chHHHHHHhhhhhhheeccCCCchheeEec--CCCcEE
Confidence 2222 23489999999 55688889999999999999863 456677889999999999998777666665 899999
Q ss_pred EEECCC
Q 040533 247 IWNVQK 252 (364)
Q Consensus 247 i~d~~~ 252 (364)
-||..+
T Consensus 250 ~wdas~ 255 (319)
T KOG4714|consen 250 HWDAST 255 (319)
T ss_pred EEcCCC
Confidence 999865
No 303
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.08 E-value=2.4e-07 Score=81.16 Aligned_cols=256 Identities=11% Similarity=0.017 Sum_probs=149.2
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceE-EEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcE--
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTS-ISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRV-- 132 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v-- 132 (364)
+.+++++.++.++.+|.++|+..=...+.+ .+.+ ... .+..+++++.+|.+.-+|.++|+.+..+.......
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAG---EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCC---ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence 346666678899999999998644443322 1111 111 24467777789999999999999887765321111
Q ss_pred ---EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc---C---cEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 040533 133 ---ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT---A---EVCGLKWSN--EGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 133 ---~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---~---~v~~~~~~~--~~~~l~~~~~d~~i~iwd 201 (364)
.+... .+..++.++.+|.+..+|..+++.....-.... . ....+.-+| .+..++.++.+|.+..+|
T Consensus 196 ~~~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 196 RGESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD 272 (394)
T ss_pred cCCCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence 11111 233566677889999899887764322110000 0 011111222 245677777899999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec--CCCeEEEEEcCCccceee
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT--KAQICGLEWNRHHKEILS 279 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~ 279 (364)
..+++. +-+.. ......+.. .+..+++.. .+|.+..+|..+++.+..... .....+... .+..++.
T Consensus 273 ~~tG~~---~W~~~--~~~~~~~~~--~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v 340 (394)
T PRK11138 273 LRSGQI---VWKRE--YGSVNDFAV--DGGRIYLVD---QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVV 340 (394)
T ss_pred CCCCCE---EEeec--CCCccCcEE--ECCEEEEEc---CCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEE
Confidence 876532 32221 111112222 233555543 689999999999987654432 111222222 1334444
Q ss_pred eccCCccCCCCeEEEeeCCCCceeeecccccccee-EEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL-ELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
+. .+|.+...|..+++.+.+.+.....+. ...+ .+..|+.++.||.|+.++.
T Consensus 341 ~~------~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 341 GD------SEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred Ee------CCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 43 389999999999998887654333232 2222 2447888999999988764
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=1.1e-09 Score=87.52 Aligned_cols=162 Identities=15% Similarity=0.241 Sum_probs=119.2
Q ss_pred EEcCC--CCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc---eeee
Q 040533 94 SWSQD--AKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN---VTSR 168 (364)
Q Consensus 94 ~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~ 168 (364)
+|+-+ |-. ++.+.+..|-+-|+++|... .+. ..+.|.++.|.. .++++..|..+|.|..+|++.+.+ ....
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 56542 223 33345667888888877532 333 567899999987 899999999999999999987621 1223
Q ss_pred eecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEE--EEccCCCcEEEeecCCCCCeE
Q 040533 169 INAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKAL--AWCPYQFNVLASGGGTQDGCI 245 (364)
Q Consensus 169 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~g~~d~~i 245 (364)
.-.|...|+++..-. ++.+|++.+.+|+|.+||++..+..+.+..+.+|-..-.-+ -..+.. .+++++| .|-..
T Consensus 294 rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~G--dDcyt 370 (425)
T KOG2695|consen 294 RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVG--DDCYT 370 (425)
T ss_pred EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-ceEEEcc--CeeEE
Confidence 336889999988776 77899999999999999999877666688888885433322 234444 4555565 89999
Q ss_pred EEEECCCCeEEEEEecC
Q 040533 246 KIWNVQKGTCIHSVDTK 262 (364)
Q Consensus 246 ~i~d~~~~~~~~~~~~~ 262 (364)
+||.++.+..+.+++..
T Consensus 371 RiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFP 387 (425)
T ss_pred EEEecccCceeeccCCC
Confidence 99999999999888654
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.05 E-value=5e-07 Score=73.42 Aligned_cols=220 Identities=14% Similarity=0.082 Sum_probs=134.1
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCC
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGH 143 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (364)
++.|..||..+++..-...+........+. ..+++..+++++.++.|..||..+|+.+..+.. ...+..... . .+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~-~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-V-DGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-E-ETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-e-ccc
Confidence 678999999998876555542211222211 233566788888999999999999998887764 222222111 2 556
Q ss_pred EEEEeeCCCcEEEEEcccCcceeeeeeccc---CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccc
Q 040533 144 ILTSGSQDKSIINHDVRVSNNVTSRINAHT---AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAA 220 (364)
Q Consensus 144 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 220 (364)
.++.++.++.+..+|..+++.......... ...........+..++.+..++.|..+|.++++ .+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~---~~w~~~~~~~~ 154 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK---LLWKYPVGEPR 154 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE---EEEEEESSTT-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc---EEEEeecCCCC
Confidence 667777888999999888886544222211 111222222237788888889999999987754 34444332211
Q ss_pred ----------e-eEEEEccCCCcEEEeecCCCCCe-EEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCC
Q 040533 221 ----------V-KALAWCPYQFNVLASGGGTQDGC-IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGD 288 (364)
Q Consensus 221 ----------v-~~~~~~~~~~~~~~~~~g~~d~~-i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 288 (364)
+ ..+.+. ++ .++++. .++. +.+ |+.+++.+.... ......+ ....+..++.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~-~~-~v~~~~---~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~------ 220 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVIS-DG-RVYVSS---GDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSS------ 220 (238)
T ss_dssp SS--EEEETTEEEEEECC-TT-EEEEEC---CTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEET------
T ss_pred CCcceeeecccccceEEE-CC-EEEEEc---CCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeC------
Confidence 1 222233 34 566654 4665 555 999999775433 3333332 3456666666533
Q ss_pred CCeEEEeeCCCCceee
Q 040533 289 GQKLCLWKYPHMTKWG 304 (364)
Q Consensus 289 ~~~i~i~d~~~~~~~~ 304 (364)
++.|..||+.+++.+.
T Consensus 221 ~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 221 DGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCCEEe
Confidence 8999999999998764
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.05 E-value=1.3e-06 Score=70.93 Aligned_cols=223 Identities=15% Similarity=0.186 Sum_probs=144.1
Q ss_pred cccCCCc--cEEEEEe--CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe-----cCCcEEEEecC-Cc
Q 040533 50 MMDWGRN--NILAIAL--GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-----MASKLQLWDAE-TS 119 (364)
Q Consensus 50 ~~~~~~~--~~~~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~iw~~~-~~ 119 (364)
.++.+|. ..++.+. .....+||..+++....+......-.--.-.||+||++|++.- ..|.|-|||.. +.
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 3455552 3555553 3578999999998766554322111222457999999998853 35789999998 66
Q ss_pred ceeeeeecCCCcEEEEEeecCCCCEEEEeeC------------------CCcEEEEEcccCcceee-ee--ecccCcEEE
Q 040533 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQ------------------DKSIINHDVRVSNNVTS-RI--NAHTAEVCG 178 (364)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------------dg~i~~~d~~~~~~~~~-~~--~~~~~~v~~ 178 (364)
+.+.++..|.-.-..+.+.| +++.|+++.- +-.+...|..+++.+.+ .+ ..|...|..
T Consensus 89 ~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred EEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 77888888887788899999 8877776521 12344455555553222 23 336678999
Q ss_pred EEEcCCCCEEEEEeCCC-------eEEEEeCCCCCCCcceE----EecccccceeEEEEccCCCcEEEeecCCCCCeEEE
Q 040533 179 LKWSNEGNLLASGGDDN-------LVHVWDHSKMSSSKCLH----RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI 247 (364)
Q Consensus 179 ~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 247 (364)
+++.++|..++..-..| -|.+++.... ...+. ....-.+.+-+|++++++..+++|+- .-+.+.+
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP--rGg~~~~ 243 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP--RGGRVAV 243 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC--CCCEEEE
Confidence 99999986555443332 1333432211 00000 01123567899999999987888876 8899999
Q ss_pred EECCCCeEEEEEecCCCeEEEEEcCCccceee
Q 040533 248 WNVQKGTCIHSVDTKAQICGLEWNRHHKEILS 279 (364)
Q Consensus 248 ~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 279 (364)
||..+++.+..... ..+..++..+++ ++++
T Consensus 244 ~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~s 273 (305)
T PF07433_consen 244 WDAATGRLLGSVPL-PDACGVAPTDDG-FLVS 273 (305)
T ss_pred EECCCCCEeecccc-CceeeeeecCCc-eEEe
Confidence 99999998876543 446777777777 4444
No 307
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.05 E-value=5.3e-09 Score=82.70 Aligned_cols=205 Identities=15% Similarity=0.280 Sum_probs=135.7
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc----ceeeeeeccc------------CcEEEEEEcCCC--CEEE
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN----NVTSRINAHT------------AEVCGLKWSNEG--NLLA 189 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~------------~~v~~~~~~~~~--~~l~ 189 (364)
....|+++.|.. .|.+|++|...|.|.+|.-+... .....+++|. ..|..+.|..++ ..++
T Consensus 25 ead~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 345789999988 89999999999999999754332 1222344553 347778887644 3667
Q ss_pred EEeCCCeEEEEeCCCCCC----------------C-----------------------cceE-EecccccceeEEEEccC
Q 040533 190 SGGDDNLVHVWDHSKMSS----------------S-----------------------KCLH-RFRDHRAAVKALAWCPY 229 (364)
Q Consensus 190 ~~~~d~~i~iwd~~~~~~----------------~-----------------------~~~~-~~~~~~~~v~~~~~~~~ 229 (364)
..+.|.+|++|.+..... + .+.+ .-..|.--+.+++|+.+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 777899999999865310 0 0000 01246667889999988
Q ss_pred CCcEEEeecCCCCCeEEEEECCCCeE---EEEEecC------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC
Q 040533 230 QFNVLASGGGTQDGCIKIWNVQKGTC---IHSVDTK------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 230 ~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
...++. + .|=.|.+|++.--.. +..++.+ .-|++..|+|....++.- ++..|.|++-|++..
T Consensus 184 ~et~lS-a---DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY-----SsSkG~Ikl~DlRq~ 254 (460)
T COG5170 184 KETLLS-A---DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY-----SSSKGEIKLNDLRQS 254 (460)
T ss_pred hheeee-c---cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEE-----ecCCCcEEehhhhhh
Confidence 755544 3 588999999875322 1222222 237888999976655432 244899999999732
Q ss_pred c------eeeec----------cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 301 T------KWGEL----------QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 301 ~------~~~~~----------~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
. .+.+. ..-...|..+.|+++|+++++-+. -+|++||+...+
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 1 11111 122356889999999999998765 589999998654
No 308
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.5e-08 Score=82.75 Aligned_cols=250 Identities=11% Similarity=0.076 Sum_probs=170.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC--c-ceeeeeecCCCcEEEEEeecCCCCEEEEeeC-CCcEEEEEcc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET--S-KLIRNLEGHDKRVATASWNHWNGHILTSGSQ-DKSIINHDVR 160 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~ 160 (364)
-|.+.|+.+.-. -.+++.+++.||.++.|.-.. + +.+..+..|...+.+++.+. ++.++.+.+. |..++++|++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEee
Confidence 577777776554 467999999999999997543 1 34455667888888998888 8999999777 9999999998
Q ss_pred cCcce-eeeeecccCcEEEEEEcCC-C-CEEEEE-eCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 161 VSNNV-TSRINAHTAEVCGLKWSNE-G-NLLASG-GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 161 ~~~~~-~~~~~~~~~~v~~~~~~~~-~-~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
+-... ...+....+.+..+ .++. - ..++++ -.++.+.++|-..... +....-.-|..+|..+.+++.+...+.
T Consensus 85 n~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-q~~~fkklH~sPV~~i~y~qa~Ds~vS- 161 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFC-QDGYFKKLHFSPVKKIRYNQAGDSAVS- 161 (558)
T ss_pred ccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcC-ccceecccccCceEEEEeeccccceee-
Confidence 66532 11222223333322 2221 1 133333 3678999999664332 333444568999999999998855444
Q ss_pred ecCCCCCeEEEEECCC------CeEEEEE----------ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC
Q 040533 237 GGGTQDGCIKIWNVQK------GTCIHSV----------DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~------~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
.. ..|.|..|.... .+....+ +......++.|+|++..+..-. .|..|++++..++
T Consensus 162 iD--~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~------~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 162 ID--ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN------PDRKVRGFVFKTG 233 (558)
T ss_pred cc--ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC------cccEEEEEEeccc
Confidence 32 679999998872 1121122 2335678999999999987764 4999999999988
Q ss_pred ceeeecc--------------------------------ccc-cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcc
Q 040533 301 TKWGELQ--------------------------------HQT-SRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGD 347 (364)
Q Consensus 301 ~~~~~~~--------------------------------~~~-~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 347 (364)
+.++.+. .|. ..-+.+.|...|++|+-|+-=| |++.++.+++..+.
T Consensus 234 klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 234 KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence 7665443 111 1235678888999999887654 78999988776544
Q ss_pred e
Q 040533 348 F 348 (364)
Q Consensus 348 ~ 348 (364)
+
T Consensus 313 ~ 313 (558)
T KOG0882|consen 313 L 313 (558)
T ss_pred e
Confidence 3
No 309
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.98 E-value=1.4e-06 Score=74.97 Aligned_cols=256 Identities=17% Similarity=0.184 Sum_probs=144.6
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC---------------
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH--------------- 128 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--------------- 128 (364)
.+.+.++|+++++..++... ...+....|||+|+.+|... ++.|.+++..++...+.....
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE 97 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE 97 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHH
T ss_pred ceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccc
Confidence 46899999999887655542 56788999999999999985 789999998877544322111
Q ss_pred --CCcEEEEEeecCCCCEEEEeeCC-Cc-----------------------------------EEEEEcccCccee-eee
Q 040533 129 --DKRVATASWNHWNGHILTSGSQD-KS-----------------------------------IINHDVRVSNNVT-SRI 169 (364)
Q Consensus 129 --~~~v~~~~~~~~~~~~l~~~~~d-g~-----------------------------------i~~~d~~~~~~~~-~~~ 169 (364)
-+.-..+-|+| +++.|+....| .. +.++|+.+++... ...
T Consensus 98 Ev~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~ 176 (353)
T PF00930_consen 98 EVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPP 176 (353)
T ss_dssp HTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---
T ss_pred cccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeec
Confidence 11234678999 88887765332 11 3344554443211 111
Q ss_pred ---ecccCcEEEEEEcCCCCEEEEE--eCC---CeEEEEeCCCCCCCcceEEecccccce---eEEEEc-cCCCcEEEee
Q 040533 170 ---NAHTAEVCGLKWSNEGNLLASG--GDD---NLVHVWDHSKMSSSKCLHRFRDHRAAV---KALAWC-PYQFNVLASG 237 (364)
Q Consensus 170 ---~~~~~~v~~~~~~~~~~~l~~~--~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~~~~~ 237 (364)
......+..+.|.++++.|+.. ..+ ..+.++|..++.. +.+.. ......| ....|. +++..++...
T Consensus 177 ~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~-~~~~~-e~~~~Wv~~~~~~~~~~~~~~~~l~~s 254 (353)
T PF00930_consen 177 NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET-RVVLE-ETSDGWVDVYDPPHFLGPDGNEFLWIS 254 (353)
T ss_dssp HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC-EEEEE-EESSSSSSSSSEEEE-TTTSSEEEEEE
T ss_pred cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce-eEEEE-ecCCcceeeecccccccCCCCEEEEEE
Confidence 1234567889999988834433 332 2466677665433 22221 1122332 245554 6666666665
Q ss_pred cCCCCC--eEEEEECCCCeEEEEEecCCCeE-EEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccccee
Q 040533 238 GGTQDG--CIKIWNVQKGTCIHSVDTKAQIC-GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL 314 (364)
Q Consensus 238 ~g~~d~--~i~i~d~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 314 (364)
. .+| .|.+++...+.......+.-.|. -+.++++++.++....- .......++.-++..+..+..+......-.
T Consensus 255 ~--~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~-~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~ 331 (353)
T PF00930_consen 255 E--RDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANG-DNPGERHLYRVSLDSGGEPKCLTCEDGDHY 331 (353)
T ss_dssp E--TTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESS-GGTTSBEEEEEETTETTEEEESSTTSSTTE
T ss_pred E--cCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecC-CCCCceEEEEEEeCCCCCeEeccCCCCCce
Confidence 4 555 46666766666443223444564 47888887766533211 112345677777773444455543333326
Q ss_pred EEeecCCCCEEEEEe
Q 040533 315 ELSQSPDGLTVVSAA 329 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~ 329 (364)
.+.|||+|++++...
T Consensus 332 ~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 332 SASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEE-TTSSEEEEEE
T ss_pred EEEECCCCCEEEEEE
Confidence 899999999876543
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.98 E-value=3.9e-07 Score=74.06 Aligned_cols=215 Identities=13% Similarity=0.053 Sum_probs=128.7
Q ss_pred CCcEEEEecCCcceeeeeecC--CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC
Q 040533 108 ASKLQLWDAETSKLIRNLEGH--DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185 (364)
Q Consensus 108 dg~i~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (364)
+|.|..||..+|+.+...... .....+. ..+ ++..+++++.++.+..||..+++.....- . ..++.... ...+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~-~-~~~~~~~~-~~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVP-DGGRVYVASGDGNLYALDAKTGKVLWRFD-L-PGPISGAP-VVDG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEE-ETTEEEEEETTSEEEEEETTTSEEEEEEE-C-SSCGGSGE-EEET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEE-eCCEEEEEcCCCEEEEEECCCCCEEEEee-c-ccccccee-eecc
Confidence 689999999999998877531 1222211 222 56677777899999999998887533322 1 11111111 1234
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCcceEEe-cccc---cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 186 NLLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHR---AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
..+++++.++.++.+|..+++. +... .... ...........+..+++.. .++.|..+|+++|+.+.....
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~---~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKV---LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCE---EEEEEE-SSCTCSTB--SEEEEETTEEEEEE---TCSEEEEEETTTTEEEEEEES
T ss_pred cccccccceeeeEecccCCcce---eeeeccccccccccccccCceEecCEEEEEe---ccCcEEEEecCCCcEEEEeec
Confidence 5677777888999999777643 4442 2111 1111122222243455543 589999999999999888765
Q ss_pred CCCe------------EEEEEcCCccceeeeccCCccCCCCe-EEEeeCCCCceeeeccccccceeEEeecCCCCEEEEE
Q 040533 262 KAQI------------CGLEWNRHHKEILSGHGFSSSGDGQK-LCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA 328 (364)
Q Consensus 262 ~~~v------------~~~~~~~~~~~l~~~~~~~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 328 (364)
..+- ..+.+. ++ .++.+.. ++. +.+ |..+++.+.+.. ...+..+ ...++..|+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~------~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~ 218 (238)
T PF13360_consen 151 GEPRGSSPISSFSDINGSPVIS-DG-RVYVSSG------DGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVT 218 (238)
T ss_dssp STT-SS--EEEETTEEEEEECC-TT-EEEEECC------TSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEE
T ss_pred CCCCCCcceeeecccccceEEE-CC-EEEEEcC------CCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEE
Confidence 3311 222223 34 4443322 554 555 999998664333 2222321 34677788888
Q ss_pred eCCCcEEEEEeeCCCCC
Q 040533 329 AADETLRFWEAFGPSGS 345 (364)
Q Consensus 329 ~~dg~i~vw~~~~~~~~ 345 (364)
+.++.|..||+.+++..
T Consensus 219 ~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ETTTEEEEEETTTTEEE
T ss_pred eCCCEEEEEECCCCCEE
Confidence 89999999999988754
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=3.1e-07 Score=82.51 Aligned_cols=208 Identities=12% Similarity=0.152 Sum_probs=139.3
Q ss_pred EEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCc-EEEEEeecCCCCEEEEeeCCCc-----EEEEEcccCc----
Q 040533 94 SWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKR-VATASWNHWNGHILTSGSQDKS-----IINHDVRVSN---- 163 (364)
Q Consensus 94 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~-----i~~~d~~~~~---- 163 (364)
+|++.+..+|.|+.+|.|.+++- +-+.++.++.+... |..+.... ..++|++.++|+. +++|+++..+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 46788889999999999988873 34455777777776 44443332 4468888877654 8999987542
Q ss_pred -cee--eeeec-----ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC-CcceEEecccccceeEEEEccCCCcEE
Q 040533 164 -NVT--SRINA-----HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS-SKCLHRFRDHRAAVKALAWCPYQFNVL 234 (364)
Q Consensus 164 -~~~--~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~ 234 (364)
.+. ..... ...++.+++.+.+-+.+|+|-.+|.|..+.-+-... +...........+|+.+++..++..++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 111 01111 356788999999989999999999999986221111 111122223467899999998887733
Q ss_pred EeecCCCCCeEEEEECCCCeE-EEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-cccc
Q 040533 235 ASGGGTQDGCIKIWNVQKGTC-IHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-HQTS 311 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~~~~~~-~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~ 311 (364)
.++ ....|.+|.+....+ ...+.. +..+.+-.+++....++++. +..+.+|+....++-..+. +|..
T Consensus 188 Fv~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-------~e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 188 FVA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-------SEFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EEE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-------CceEEEEcCCCcceeeeecCCCeE
Confidence 333 357899999985442 333443 46688888888777455443 7899999998777766776 6654
Q ss_pred ce
Q 040533 312 RI 313 (364)
Q Consensus 312 ~i 313 (364)
..
T Consensus 258 ~~ 259 (933)
T KOG2114|consen 258 EM 259 (933)
T ss_pred EE
Confidence 43
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.97 E-value=1.7e-09 Score=60.18 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=36.4
Q ss_pred CceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 300 MTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 300 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
++++..+++|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356788999999999999999999999999999999997
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.95 E-value=7.7e-06 Score=66.56 Aligned_cols=231 Identities=15% Similarity=0.162 Sum_probs=149.5
Q ss_pred CceEEEEcC-CCCEEEEEecCCc-EEEEecCCcceeeeeecCCCcEE--EEEeecCCCCEEEEeeC-----CCcEEEEEc
Q 040533 89 FPTSISWSQ-DAKTLAVGYMASK-LQLWDAETSKLIRNLEGHDKRVA--TASWNHWNGHILTSGSQ-----DKSIINHDV 159 (364)
Q Consensus 89 ~v~~~~~s~-~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~~~~~-----dg~i~~~d~ 159 (364)
....++.+| .+..++.+-.-|+ ..+||..+++....+....+.-. .-.|++ ++++|++.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 345678889 5566777766664 78999999998877665433322 468999 9999988644 478999999
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC------------------CCeEEEEeCCCCCCCcceEE--e--ccc
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD------------------DNLVHVWDHSKMSSSKCLHR--F--RDH 217 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~iwd~~~~~~~~~~~~--~--~~~ 217 (364)
...-..+..+..|.-....+.+.|||+.|+++.. +.++...|..++. .+.+ + ..|
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~---ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA---LLEQVELPPDLH 161 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc---eeeeeecCcccc
Confidence 8444446667677666778899999988877631 1233344433332 2333 3 236
Q ss_pred ccceeEEEEccCCCcEEEeec-CC-CC--CeEEEEECCCCeEEEEEe--------cCCCeEEEEEcCCccceeeeccCCc
Q 040533 218 RAAVKALAWCPYQFNVLASGG-GT-QD--GCIKIWNVQKGTCIHSVD--------TKAQICGLEWNRHHKEILSGHGFSS 285 (364)
Q Consensus 218 ~~~v~~~~~~~~~~~~~~~~~-g~-~d--~~i~i~d~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~~~~ 285 (364)
...+..+++.++|.-+++.-. |. .+ --|.+++. ++.+..+. ....+-++++++++..+++++
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts---- 235 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS---- 235 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC----
Confidence 667999999998843333211 00 01 12333332 33233332 236789999999999887764
Q ss_pred cCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcE
Q 040533 286 SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETL 334 (364)
Q Consensus 286 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i 334 (364)
-..+.+.+||..+++.+....-. .+..++-.+++ ++++.+. |.+
T Consensus 236 -PrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~-G~~ 279 (305)
T PF07433_consen 236 -PRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQ-GQL 279 (305)
T ss_pred -CCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCCC-ccE
Confidence 34899999999999988776543 35667766666 5655544 543
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=7.1e-08 Score=85.83 Aligned_cols=183 Identities=13% Similarity=0.245 Sum_probs=132.3
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 166 (364)
.+.++|++++ +++++.|+.+|.|++++.+.. . .+...|... .. +|.++++|+.||.|.|-.+-+.+...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence 4567788875 679999999999999997643 3 333335443 33 89999999999999999888776422
Q ss_pred eeeecccCcEEEEEEcCC-----CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC
Q 040533 167 SRINAHTAEVCGLKWSNE-----GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241 (364)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 241 (364)
......++.+++++|+ .+.+++|+.-| +.++.-+-......+ .+....++|.++.|.. .+++-+.
T Consensus 108 --~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g---~lIAWan--- 177 (846)
T KOG2066|consen 108 --QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRG---NLIAWAN--- 177 (846)
T ss_pred --eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecC---cEEEEec---
Confidence 2246688999999997 56899999888 777764332222222 3455678999999975 5666654
Q ss_pred CCeEEEEECCCCeEEEEEecCC-------CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 242 DGCIKIWNVQKGTCIHSVDTKA-------QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 242 d~~i~i~d~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
|--|++||+.+++.+..++.+. -...+.|.++.+.++ |. ..+|+|..++
T Consensus 178 d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW-------~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GW-------GDSVKICSIK 233 (846)
T ss_pred CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ec-------CCeEEEEEEe
Confidence 5559999999998887775432 145678888777665 32 6788888876
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=1.2e-09 Score=97.69 Aligned_cols=201 Identities=16% Similarity=0.176 Sum_probs=148.4
Q ss_pred ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCC--eE
Q 040533 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDN--LV 197 (364)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i 197 (364)
+..+.+..|....+|++|+- +.+.|+.|+..|.|+++++.++.. ......|..+|+-+.-+.+|..+++.+.-. -.
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchH
Confidence 34456777889999999999 899999999999999999998874 667889999999999888998877766443 36
Q ss_pred EEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-----CCCeEEEEEcC
Q 040533 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-----KAQICGLEWNR 272 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-----~~~v~~~~~~~ 272 (364)
.+|++.. ...+.+.+.+ -.++.|+.....-++ | +......+||++++.++.++-. .-.-+...|+|
T Consensus 1170 aLW~~~s--~~~~~Hsf~e----d~~vkFsn~~q~r~~-g--t~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1170 ALWDASS--TGGPRHSFDE----DKAVKFSNSLQFRAL-G--TEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred HHhcccc--ccCccccccc----cceeehhhhHHHHHh-c--ccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 7899765 3344555543 346778765422222 2 2456789999999988766421 12347788999
Q ss_pred CccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcce
Q 040533 273 HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF 348 (364)
Q Consensus 273 ~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 348 (364)
...+++- || .+||.+..+.+..|...... ..-.|+|.|..++.-++ |||+++.+.++..
T Consensus 1241 ~D~LIln---------dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1241 CDTLILN---------DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSV 1299 (1516)
T ss_pred CcceEee---------Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcC
Confidence 9988764 44 47999988888877655422 23469999998887764 8999987776544
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.8e-07 Score=76.79 Aligned_cols=242 Identities=11% Similarity=0.092 Sum_probs=141.5
Q ss_pred EEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC-CEEE
Q 040533 111 LQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG-NLLA 189 (364)
Q Consensus 111 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 189 (364)
+++.+..+.+....+..+...|..++|+|.+..++..++.+..|++.|+++... ...+..+ ..+++++|.-+. ++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-VSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee-eeheecc-CCceeeeeccCCcceeE
Confidence 666666666666667778889999999995556899999999999999997664 5556666 789999998854 5788
Q ss_pred EEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEc------cCCCcEEEeecCCCCCeEEEEECCC----CeEEEEE
Q 040533 190 SGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC------PYQFNVLASGGGTQDGCIKIWNVQK----GTCIHSV 259 (364)
Q Consensus 190 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~~~g~~d~~i~i~d~~~----~~~~~~~ 259 (364)
.|...|.|.+||++..+.......-.....+|..++.- +.+ .+++... --+..|+..- .-++..+
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~l----t~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFAL----TVLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCcccccccc-ceEEeee----hhhhhhhhhccccCCCccccc
Confidence 88899999999999765432211111123344444332 223 2333321 2244555432 2233334
Q ss_pred ecCCCeEEEEEcCCccceeeeccCC-ccCCCCeEE-EeeCCCCceeeecc-cc-ccc------eeEEeecCCCCEEEE-E
Q 040533 260 DTKAQICGLEWNRHHKEILSGHGFS-SSGDGQKLC-LWKYPHMTKWGELQ-HQ-TSR------ILELSQSPDGLTVVS-A 328 (364)
Q Consensus 260 ~~~~~v~~~~~~~~~~~l~~~~~~~-~~~~~~~i~-i~d~~~~~~~~~~~-~~-~~~------i~~i~~~~~~~~l~~-~ 328 (364)
+..+...++++.+..+.++....-. .-..-..+- --|..+|.++...+ .+ .+. -..+.-.++.++++. +
T Consensus 328 e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g 407 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG 407 (463)
T ss_pred CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEec
Confidence 4456667777777666666553210 000000011 11222333332221 11 100 011222345555544 4
Q ss_pred eCCCcEEEEEeeCCCCCcceeccCCceeeeee
Q 040533 329 AADETLRFWEAFGPSGSGDFVSHLDGLLSLKV 360 (364)
Q Consensus 329 ~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~ 360 (364)
+..+.+.+||..+.+.++++.. ..+|.+++.
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~-~epv~Dicp 438 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLAL-SEPVLDICP 438 (463)
T ss_pred CCcceeEEeccchhheeeeccc-Ccceeecce
Confidence 5567899999999999888765 367776654
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.89 E-value=9e-07 Score=82.58 Aligned_cols=207 Identities=10% Similarity=0.104 Sum_probs=136.7
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK---- 204 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---- 204 (364)
...|.++.|.. +.+.++.+..+|.|.+-|..+.. ......-...|.+++|+||++.++..+..+++.+-+-.-
T Consensus 68 d~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLA-DTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEec-ccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 35799999998 88889999999999999887665 444445567899999999999999998888877654210
Q ss_pred C----------------CCCcceEEeccc---------------------ccceeEEEEccCCCcEEEeecCC-CC-CeE
Q 040533 205 M----------------SSSKCLHRFRDH---------------------RAAVKALAWCPYQFNVLASGGGT-QD-GCI 245 (364)
Q Consensus 205 ~----------------~~~~~~~~~~~~---------------------~~~v~~~~~~~~~~~~~~~~~g~-~d-~~i 245 (364)
. .-++....+++. .+.=+++.|-.||.++.++.-.. .+ ..|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 0 001111122211 11123589999996655532100 23 789
Q ss_pred EEEECCCCeEEEEE-ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC---CceeeeccccccceeEEeecCC
Q 040533 246 KIWNVQKGTCIHSV-DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH---MTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 246 ~i~d~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
++||.. |..-.+- ...+.-.+++|-|.|..+++... -..++.|.+|..+. ++....+.....++..++|+.+
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~---~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQC---KTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCCeEeeeee---cCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 999987 4332222 12344678999999999887543 23456899998543 2222223333445899999999
Q ss_pred CCEEEE---EeCCCcEEEEEeeCC
Q 040533 322 GLTVVS---AAADETLRFWEAFGP 342 (364)
Q Consensus 322 ~~~l~~---~~~dg~i~vw~~~~~ 342 (364)
+..||+ ......|++|-+.+.
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCceeeeecccccceEEEEEecCe
Confidence 999988 445555999987664
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.89 E-value=7.4e-08 Score=86.86 Aligned_cols=180 Identities=21% Similarity=0.279 Sum_probs=134.5
Q ss_pred CCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEE
Q 040533 99 AKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCG 178 (364)
Q Consensus 99 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~ 178 (364)
+..++.|+-...+..+|+.+.+..+...-..+.|.-++. +++.+.+|...|+|.+-|.++.+. +..+.+|.+.|.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~-iht~~aHs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFET-IHTFDAHSGSISD 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCce-eeeeeccccceee
Confidence 445666776777888999988887776655556777776 889999999999999999987774 7889999999987
Q ss_pred EEEcCCCCEEEEEeC---------CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEE
Q 040533 179 LKWSNEGNLLASGGD---------DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249 (364)
Q Consensus 179 ~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d 249 (364)
+.. .|+.|++++. |.-|++||+|......++.- +.++ .-+.|+|.-...++..+ ..|...+.|
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---~~~P-~flrf~Psl~t~~~V~S--~sGq~q~vd 294 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---PYGP-QFLRFHPSLTTRLAVTS--QSGQFQFVD 294 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---ccCc-hhhhhcccccceEEEEe--cccceeecc
Confidence 655 5889999875 45588999998765444332 2222 45678887666666655 789999999
Q ss_pred C---CCCe-EEEEE-ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 250 V---QKGT-CIHSV-DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 250 ~---~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
. .+.. -+..+ ...+.+.++++++++..++.|.. +|.|.+|.
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~------~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH------EGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEEecc------cCcEeeec
Confidence 4 3321 12222 33455999999999999999865 99999997
No 319
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=9.6e-09 Score=82.35 Aligned_cols=167 Identities=14% Similarity=0.134 Sum_probs=122.0
Q ss_pred EEcC--CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC----
Q 040533 180 KWSN--EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG---- 253 (364)
Q Consensus 180 ~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~---- 253 (364)
+|+- .+.. ++.+.+-.|-+-|+.++- .+.+. ..+.|.++.|...+ .++..|. ..|.|..+|++.+
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~----~qsf~-sksDVfAlQf~~s~-nLv~~Gc--RngeI~~iDLR~rnqG~ 288 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGH----QQSFQ-SKSDVFALQFAGSD-NLVFNGC--RNGEIFVIDLRCRNQGN 288 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeeccc----ccccc-cchhHHHHHhcccC-CeeEecc--cCCcEEEEEeeecccCC
Confidence 5543 2334 445556778888877653 23333 56778888898766 5666665 9999999999864
Q ss_pred -eEEEEEecCCCeEEEEEcC-CccceeeeccCCccCCCCeEEEeeCCCCce---eeeccccccceeE--EeecCCCCEEE
Q 040533 254 -TCIHSVDTKAQICGLEWNR-HHKEILSGHGFSSSGDGQKLCLWKYPHMTK---WGELQHQTSRILE--LSQSPDGLTVV 326 (364)
Q Consensus 254 -~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~--i~~~~~~~~l~ 326 (364)
.+...+.+++.|+++..-. ++++|++.. .+|.|++||++--++ +.++.+|.+.-.- +-..+....++
T Consensus 289 ~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~------M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~ 362 (425)
T KOG2695|consen 289 GWCAQRLYHDSSVTSLQILQFSQQKLMASD------MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIF 362 (425)
T ss_pred CcceEEEEcCcchhhhhhhccccceEeecc------CcCceeEeeehhhhcccceeeeecccccccccccccccccceEE
Confidence 5677788899999998877 778887764 499999999987766 8888888654333 33456667899
Q ss_pred EEeCCCcEEEEEeeCCCCCcceecc----CCceeeeeec
Q 040533 327 SAAADETLRFWEAFGPSGSGDFVSH----LDGLLSLKVS 361 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~~~~~~~~----~~~v~~~~~s 361 (364)
+++.|...+||.++.+..+.++... ...+.+++|.
T Consensus 363 s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 363 SVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 9999999999999999887776532 3345666664
No 320
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.86 E-value=7.4e-06 Score=65.61 Aligned_cols=195 Identities=13% Similarity=0.157 Sum_probs=113.6
Q ss_pred eeecCCCCCceEEEEcCCCC-EEEEEecCCcEEEEecCCcceeeeeecC-CCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 81 LKVTGEDDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSKLIRNLEGH-DKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
..+.+-...+..++|+|+.+ ++++....+.|..++. +|+.++.+.-. .+..-.+++.. ++.++++.-.++.+.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEE
Confidence 34556666799999999765 5566667788888886 47888776543 35678888875 666666655688999998
Q ss_pred cccCccee-----eee-----ecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceE--Eec------ccccc
Q 040533 159 VRVSNNVT-----SRI-----NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLH--RFR------DHRAA 220 (364)
Q Consensus 159 ~~~~~~~~-----~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~------~~~~~ 220 (364)
+....... ..+ ..++..+-.++|++.++.|+.+-+..-..+|.++.......+. ... .....
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 84332111 111 1245668999999988777777766666666654311111111 111 12335
Q ss_pred eeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC----------CCeEEEEEcCCccceeee
Q 040533 221 VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK----------AQICGLEWNRHHKEILSG 280 (364)
Q Consensus 221 v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~ 280 (364)
+.+++++|....+++... .+..|..+| .+|+.+..+... .+...+++.++|.+.+++
T Consensus 173 ~S~l~~~p~t~~lliLS~--es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSD--ESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp --EEEEETTTTEEEEEET--TTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ccceEEcCCCCeEEEEEC--CCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 788999998888888766 889999999 678877766543 257899999999877765
No 321
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.86 E-value=1.4e-07 Score=85.13 Aligned_cols=185 Identities=15% Similarity=0.208 Sum_probs=135.6
Q ss_pred CCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEE
Q 040533 54 GRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVA 133 (364)
Q Consensus 54 ~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~ 133 (364)
++..++.++-...+..+|+.+.+..+...+.. ..|+-++. +++.+.+|...|+|.+-|..+.+.+.++..|.+.|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a--~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA--SGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC--CceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 56678888888889999999888766665432 23554444 678999999999999999999999999999999999
Q ss_pred EEEeecCCCCEEEEeeCC---------CcEEEEEcccCcceeeeeecccCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCC
Q 040533 134 TASWNHWNGHILTSGSQD---------KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE-GNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~ 203 (364)
.+.. .|+.|++++.. .-|+|||++.-+. +..+.-+.++ .-+.|+|. ...+++++..|...+-|..
T Consensus 222 DfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 222 DFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred eeec---cCCeEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeecccc
Confidence 8877 78899988754 4578999987654 2333333333 44677773 4578888999999999943
Q ss_pred CCCCC-cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEEC
Q 040533 204 KMSSS-KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 204 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 250 (364)
....+ ..+..+......+..+.+++.+. .++.+. .+|.|.+|.-
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd--~~g~v~~wa~ 341 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGD-ALAFGD--HEGHVNLWAD 341 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCc-eEEEec--ccCcEeeecC
Confidence 32221 22333444456699999999984 555544 8999999973
No 322
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.85 E-value=2.3e-06 Score=76.10 Aligned_cols=246 Identities=11% Similarity=0.034 Sum_probs=140.2
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEc--CCCCEEEEEe------------------cCCcEEEEecCCcceeee
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWS--QDAKTLAVGY------------------MASKLQLWDAETSKLIRN 124 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~------------------~dg~i~iw~~~~~~~~~~ 124 (364)
..|-..++...++.++.+++. ...+..++|- |+..|+++++ ..+.+.+.|.++.+...+
T Consensus 152 ~Rvari~l~~~~~~~i~~iPn-~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~q 230 (635)
T PRK02888 152 TRVARIRLDVMKCDKITELPN-VQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQ 230 (635)
T ss_pred cceEEEECccEeeceeEeCCC-ccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEEEE
Confidence 456666666666655555432 2223333332 3333333332 345677778887777666
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCC---C-cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQD---K-SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
+.-. +....++++| ++.++++.+.+ | ++..-+...... ...+.. ..+ -++.++|++...+ ++.|.+.
T Consensus 231 V~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~-~vvfni--~~i--ea~vkdGK~~~V~--gn~V~VI 301 (635)
T PRK02888 231 VMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDW-VVVFNI--ARI--EEAVKAGKFKTIG--GSKVPVV 301 (635)
T ss_pred EEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCce-EEEEch--HHH--HHhhhCCCEEEEC--CCEEEEE
Confidence 6533 3456778889 88888777532 2 222222211110 111100 000 1234577766653 6789999
Q ss_pred eCCCCC--CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE------------EEEEecCCCeE
Q 040533 201 DHSKMS--SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC------------IHSVDTKAQIC 266 (364)
Q Consensus 201 d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~------------~~~~~~~~~v~ 266 (364)
|.++.. ....+..+ .-......+.++|||+++++++. .+.++.++|+.+.+. ....+......
T Consensus 302 D~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVank--lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL 378 (635)
T PRK02888 302 DGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGK--LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL 378 (635)
T ss_pred ECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCC--CCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc
Confidence 977610 01223333 34556788999999999999876 899999999988552 44444444456
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCC----------Cceeeecccccccee-----EEeecCCCCEEEEEe
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH----------MTKWGELQHQTSRIL-----ELSQSPDGLTVVSAA 329 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~----------~~~~~~~~~~~~~i~-----~i~~~~~~~~l~~~~ 329 (364)
..+|.++|....+-.. |..|..|++.. ...+..+.-|-++-. .=.-.|||++|++..
T Consensus 379 HTaFDg~G~aytslf~------dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 379 HTAFDGRGNAYTTLFL------DSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eEEECCCCCEEEeEee------cceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 6788888874443322 99999999876 233444443333221 112367888888763
No 323
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.85 E-value=1.6e-08 Score=56.20 Aligned_cols=39 Identities=33% Similarity=0.681 Sum_probs=36.6
Q ss_pred cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 119 SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
++++.++.+|.+.|.+++|+| ++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467889999999999999999 899999999999999997
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=4.6e-07 Score=80.86 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=127.2
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
...+.+.+...++.+.-+|.|++.+.+..- ...+ .|... ..+|.++++|+.||+|.|-.+-+.+...++.
T Consensus 41 ~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~---~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 41 AISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNF---DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred HHHHHHhhcceeeeccccceEEEEecCCcc-cccc---ccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence 466677777677778889999999976553 1111 34333 6689999999999999999999888877766
Q ss_pred cCCCcEEEEEeecC----CCCEEEEeeCCCcEEEEEcccCcc-eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 127 GHDKRVATASWNHW----NGHILTSGSQDKSIINHDVRVSNN-VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 127 ~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
...++.+++++|+ ..+.+++|+.-| +.++.-+--+. .......-.++|.++.|. |+++|-++.+| |++||
T Consensus 111 -f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd 185 (846)
T KOG2066|consen 111 -FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYD 185 (846)
T ss_pred -cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEe
Confidence 5578999999993 256899999888 76664321111 112355567899999996 67999999888 99999
Q ss_pred CCCCCCCcceEEeccc------ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 202 HSKMSSSKCLHRFRDH------RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
+..... +..+... ......+.|.++. .++.| ...+|++..++.
T Consensus 186 ~~~~~~---l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIG---W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 186 TPTRQR---LTNIPPPSQSVRPELFPPHLHWQDED--RLVIG---WGDSVKICSIKK 234 (846)
T ss_pred ccccce---eeccCCCCCCCCcccCCCceEecCCC--eEEEe---cCCeEEEEEEec
Confidence 876433 2222221 1223467888765 34444 456788888873
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.83 E-value=3.3e-06 Score=78.97 Aligned_cols=241 Identities=16% Similarity=0.215 Sum_probs=147.7
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc----ccC
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV----RVS 162 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~----~~~ 162 (364)
.+.|.++.|..+++.++.+...|.|.+-|.++.... ....-...|.+++|+| +++.++..+..+++.+-.- -..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhc
Confidence 468999999999999999999999999998776533 2333567899999999 9999999888887765432 101
Q ss_pred cce------------------eeeeecc---------------------cCcEEEEEEcCCCCEEEEE-----eCCCeEE
Q 040533 163 NNV------------------TSRINAH---------------------TAEVCGLKWSNEGNLLASG-----GDDNLVH 198 (364)
Q Consensus 163 ~~~------------------~~~~~~~---------------------~~~v~~~~~~~~~~~l~~~-----~~d~~i~ 198 (364)
+++ ...+.+. .+.=++++|--||+++|+. .....++
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 100 0011110 0112358999999999983 3337899
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe----cC-CCeEEEEEcCC
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD----TK-AQICGLEWNRH 273 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~-~~v~~~~~~~~ 273 (364)
+||-+ +.. -..-....+.-.+++|-|.|..+.+......|+.|.+|.- +|-....+. .. .++..++|+.+
T Consensus 226 V~drE-g~L---ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 226 VYDRE-GAL---NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred Eeccc-chh---hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCC
Confidence 99965 211 1111112333467999998865555554446778999874 444333332 22 34899999999
Q ss_pred ccceeeeccCCccCCCCeEEEeeCCCCcee--eeccccccceeEEeecCCCC-EEEEEeCCCcEEEEEe
Q 040533 274 HKEILSGHGFSSSGDGQKLCLWKYPHMTKW--GELQHQTSRILELSQSPDGL-TVVSAAADETLRFWEA 339 (364)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~ 339 (364)
+..|++-.. +.....|++|-..+..-. ..+....... +.|+|... .|..-..+|...++++
T Consensus 301 sdiLAv~~~---~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 301 SDILAVVTS---NLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CCceeeeec---ccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 999987432 123445999988764321 1222122111 66776332 2333335555544443
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=9.4e-07 Score=79.51 Aligned_cols=203 Identities=21% Similarity=0.254 Sum_probs=135.5
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCc-EEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCCCC-
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAE-VCGLKWSNEGNLLASGGDDN-----LVHVWDHSKMSSS- 208 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~- 208 (364)
+|++ ++..++.|+.+|.|.+.+- .......++++... |..+-...+.++|++.+.|+ .+++||++..+..
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEcC-CCceEEEeeccccEEEecc--cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 4566 8889999999999888773 33344667777766 44443333446888877665 4899999765322
Q ss_pred --cce--EEecc-----cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC----C-eEEEEEecCCCeEEEEEcCCc
Q 040533 209 --KCL--HRFRD-----HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK----G-TCIHSVDTKAQICGLEWNRHH 274 (364)
Q Consensus 209 --~~~--~~~~~-----~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~----~-~~~~~~~~~~~v~~~~~~~~~ 274 (364)
.++ ....+ .+.++.+++.+.+- ..+++|- .+|.|..+.-.- + +.........+|+++++..++
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf--~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGF--TNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEe--cCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 233 11112 35678889998874 5677765 899999885321 1 222333456889999999998
Q ss_pred cc-eeeeccCCccCCCCeEEEeeCCCCce-eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee-cc
Q 040533 275 KE-ILSGHGFSSSGDGQKLCLWKYPHMTK-WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV-SH 351 (364)
Q Consensus 275 ~~-l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~ 351 (364)
.. +++.+ ...|.+|.+....+ ...+..|.....|..+++....+++++. ..+.+|+.........+. +|
T Consensus 184 ~s~lFv~T-------t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 184 KSVLFVAT-------TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGE 255 (933)
T ss_pred ceeEEEEe-------cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCC
Confidence 87 33322 67899999885443 3347778888999999886664555543 478999988766655555 44
Q ss_pred C
Q 040533 352 L 352 (364)
Q Consensus 352 ~ 352 (364)
.
T Consensus 256 k 256 (933)
T KOG2114|consen 256 K 256 (933)
T ss_pred e
Confidence 3
No 327
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.81 E-value=1.2e-05 Score=72.24 Aligned_cols=279 Identities=13% Similarity=0.091 Sum_probs=158.3
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCC----CCCce--EEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCC
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGE----DDFPT--SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD 129 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~----~~~v~--~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 129 (364)
+.+++++.++.|+-+|..+++..=....... ...+. .+... ++..++.++.+|.|.-+|.++|+.+..+....
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 3466677789999999999876433332111 00010 11111 22678888889999999999999987766433
Q ss_pred Cc-----E-EEEEeecCCCCEEEEee---------CCCcEEEEEcccCcceeeeeecccC-------------------c
Q 040533 130 KR-----V-ATASWNHWNGHILTSGS---------QDKSIINHDVRVSNNVTSRINAHTA-------------------E 175 (364)
Q Consensus 130 ~~-----v-~~~~~~~~~~~~l~~~~---------~dg~i~~~d~~~~~~~~~~~~~~~~-------------------~ 175 (364)
.. + ....+ .+.+++.++ .+|.+..+|..+++..-........ .
T Consensus 141 ~~~~~~~i~ssP~v---~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 141 QVPPGYTMTGAPTI---VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CcCcceEecCCCEE---ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 21 1 11222 224455553 3678888898887754332211110 0
Q ss_pred E-EEEEEcCCCCEEEEEeCCC------------------eEEEEeCCCCCCCcceEEecccccce------eEEEEc---
Q 040533 176 V-CGLKWSNEGNLLASGGDDN------------------LVHVWDHSKMSSSKCLHRFRDHRAAV------KALAWC--- 227 (364)
Q Consensus 176 v-~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~~~~~~~~~~~~~v------~~~~~~--- 227 (364)
+ ...++.+.+..++.++.++ .|.-+|..+++. .-.++...... ....+.
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~---~W~~~~~~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV---KWFYQTTPHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE---EEEeeCCCCCCcccccCCCCeEEecc
Confidence 1 1234444556777777655 688888776543 33322111100 000111
Q ss_pred -cCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeecc-CC-----------ccCCCCeE
Q 040533 228 -PYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHG-FS-----------SSGDGQKL 292 (364)
Q Consensus 228 -~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~-----------~~~~~~~i 292 (364)
-++. .+++.++ .+|.+...|.++|+.+...... ...+..+| ..++.+.. .. ....++.+
T Consensus 295 ~~~g~~~~~V~~g~--~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l 368 (488)
T cd00216 295 PKDGKPVPAIVHAP--KNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGL 368 (488)
T ss_pred ccCCCeeEEEEEEC--CCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEE
Confidence 1221 2455544 7999999999999998776432 11233334 22222110 00 01236889
Q ss_pred EEeeCCCCceeeeccccc--------cce--eEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 293 CLWKYPHMTKWGELQHQT--------SRI--LELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 293 ~i~d~~~~~~~~~~~~~~--------~~i--~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
.-.|..+++.+-+..... .+. ..+.. .+..|+.++.||.|+.+|..+++.+.++.
T Consensus 369 ~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 369 AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 999999998887765331 111 11222 55689999999999999999999877665
No 328
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=6.2e-05 Score=65.43 Aligned_cols=269 Identities=12% Similarity=0.093 Sum_probs=171.4
Q ss_pred EEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC-cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEE
Q 040533 67 LYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS-KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHIL 145 (364)
Q Consensus 67 i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 145 (364)
+.+++..+........+.. ....+...+++..+....... .+...+................-..++.++...+.+
T Consensus 13 ~~v~~~~~~~~~~~~~~~~---~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR---GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC---CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEE
Confidence 6666666555444443322 566788888886555544222 455555442221111111113345677777344466
Q ss_pred EEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCCCcceEEeccccccee
Q 040533 146 TSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD---DNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222 (364)
Q Consensus 146 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 222 (364)
+....+..|.+.|..+.........+. ....++++++++.+.++.. ++.+.+.|-.+. +.+.....-..+ .
T Consensus 90 v~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---~~~~~~~vG~~P-~ 163 (381)
T COG3391 90 VTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---KVTATIPVGNTP-T 163 (381)
T ss_pred EecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC---eEEEEEecCCCc-c
Confidence 666667899999977665433333232 5678999999987777765 578888885543 334443322234 8
Q ss_pred EEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE-----EEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 223 ALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH-----SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
.++++|++..++++.. .++.|.+.|.......+ ..........+.++|+|.++.+.... +.++.+...|.
T Consensus 164 ~~a~~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~---~~~~~v~~id~ 238 (381)
T COG3391 164 GVAVDPDGNKVYVTNS--DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG---SGSNNVLKIDT 238 (381)
T ss_pred eEEECCCCCeEEEEec--CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc---CCCceEEEEeC
Confidence 8999999988888764 78999999987766664 12333456788999999988776431 12368999998
Q ss_pred CCCceeee-ccccccceeEEeecCCCCEEEEEeC-CCcEEEEEeeCCCCCccee
Q 040533 298 PHMTKWGE-LQHQTSRILELSQSPDGLTVVSAAA-DETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 298 ~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~ 349 (364)
.++..... ..........+..+|+|..+.+... .+.+.+-|..+........
T Consensus 239 ~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 239 ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 88777665 2211114567899999999888844 4889999988876655544
No 329
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.79 E-value=5.9e-05 Score=63.52 Aligned_cols=279 Identities=17% Similarity=0.125 Sum_probs=137.7
Q ss_pred cEEEEEe-C--CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEE
Q 040533 57 NILAIAL-G--LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVA 133 (364)
Q Consensus 57 ~~~~~~~-~--~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~ 133 (364)
.++.++. + ..+++.|+.+++..++....+ .......++|+.+.++....+..|+-.|+++.+....+.....-+-
T Consensus 49 kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g 126 (386)
T PF14583_consen 49 KLLFASDFDGNRNLYLLDLATGEITQLTDGPG--DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKG 126 (386)
T ss_dssp EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEE
T ss_pred EEEEEeccCCCcceEEEEcccCEEEECccCCC--CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccccc
Confidence 4555443 3 589999999999877765322 2233566789888887765567899999999887666666666665
Q ss_pred EEEeecC-CCCEEEEeeC---C-------------------CcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEE
Q 040533 134 TASWNHW-NGHILTSGSQ---D-------------------KSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLA 189 (364)
Q Consensus 134 ~~~~~~~-~~~~l~~~~~---d-------------------g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 189 (364)
...|... ++..++..-. | ..|.-.|+.+++ ...+......+..+.|+| +..+|+
T Consensus 127 ~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~~wlgH~~fsP~dp~li~ 204 (386)
T PF14583_consen 127 YGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDTDWLGHVQFSPTDPTLIM 204 (386)
T ss_dssp EEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EEEEEEETTEEEEEE
T ss_pred ccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecCccccCcccCCCCCCEEE
Confidence 6677532 4444433211 1 234455666554 333334456677889999 445666
Q ss_pred EEeC---CC-eEEEEeCCCCCCCcceEEeccc--ccceeEEEEccCCCcEEEeec--CCCCCeEEEEECCCCeEEEEEec
Q 040533 190 SGGD---DN-LVHVWDHSKMSSSKCLHRFRDH--RAAVKALAWCPYQFNVLASGG--GTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 190 ~~~~---d~-~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~--g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
-|-+ +. .-+||-++.... ....+..+ ...+..=-|.|+|..+...+. +..+..|.-+|..+++.......
T Consensus 205 fCHEGpw~~Vd~RiW~i~~dg~--~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~ 282 (386)
T PF14583_consen 205 FCHEGPWDLVDQRIWTINTDGS--NVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM 282 (386)
T ss_dssp EEE-S-TTTSS-SEEEEETTS-----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE
T ss_pred EeccCCcceeceEEEEEEcCCC--cceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC
Confidence 6543 22 125665543221 12222222 233444568999987766332 22566788899998876544333
Q ss_pred CCCeEEEEEcCCccceeeeccCC----------ccCCCCeEEEeeCCCCceeee---------cccccc-ceeEEeecCC
Q 040533 262 KAQICGLEWNRHHKEILSGHGFS----------SSGDGQKLCLWKYPHMTKWGE---------LQHQTS-RILELSQSPD 321 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~----------~~~~~~~i~i~d~~~~~~~~~---------~~~~~~-~i~~i~~~~~ 321 (364)
+ ....+..+++|++++.-.+-. ....+.-|+++++..++.... +.++.. .=-...|+||
T Consensus 283 p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPD 361 (386)
T PF14583_consen 283 P-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPD 361 (386)
T ss_dssp --SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TT
T ss_pred C-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCC
Confidence 3 455667778888765422100 001233677888876554321 111111 1135799999
Q ss_pred CCEE-EEEeCCCcEEEEEeeCC
Q 040533 322 GLTV-VSAAADETLRFWEAFGP 342 (364)
Q Consensus 322 ~~~l-~~~~~dg~i~vw~~~~~ 342 (364)
|+++ +++...|...||-++-+
T Consensus 362 gk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 362 GKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp SSEEEEEE-TTSS-EEEEEE--
T ss_pred CCEEEEECCCCCCccEEEEeCc
Confidence 9976 55566788877766543
No 330
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.78 E-value=5.4e-09 Score=90.46 Aligned_cols=261 Identities=15% Similarity=0.176 Sum_probs=161.3
Q ss_pred CCCceEEEEcCC--CCEEEEEecCCcEEEEecCCcce--eeeeecCCCcEEEEEeecCCCCEEEEee----CCCcEEEEE
Q 040533 87 DDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSKL--IRNLEGHDKRVATASWNHWNGHILTSGS----QDKSIINHD 158 (364)
Q Consensus 87 ~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~~~d 158 (364)
...+.|++++.+ ...+++|..+|.|-+-.+....- .....++..+.++++|++.+.+.||+|- .|..+.+||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 345677777653 35889999999999988764422 2345668889999999997788888874 456799999
Q ss_pred cccCcc-eee--eee-cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEE
Q 040533 159 VRVSNN-VTS--RIN-AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVL 234 (364)
Q Consensus 159 ~~~~~~-~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 234 (364)
+.+.-. +.. .+. +......+++|..+.+++.+|.....+.++|+|.... ....-.+..+..+..+|.....+
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~----~~~svnTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD----SVSSVNTKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh----hhhhhhhhhcccceecCCCCCce
Confidence 987621 011 111 1334566888988889999999999999999884221 11111344577788888666677
Q ss_pred EeecCCCCCeEEEEEC-CC-CeEEEEEec-----CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC-------
Q 040533 235 ASGGGTQDGCIKIWNV-QK-GTCIHSVDT-----KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM------- 300 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~-~~-~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~------- 300 (364)
++. .||.|.+||. ++ ..++..+.. ..++..++|+|...-+++... -+.+.|+.||+..-
T Consensus 212 cs~---~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~----RdS~tIrlydi~~v~t~~s~n 284 (783)
T KOG1008|consen 212 CSN---SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS----RDSITIRLYDICVVGTEGSAN 284 (783)
T ss_pred ecc---ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhc----cCcceEEEecccccCCccccc
Confidence 754 5999999993 33 222222222 235899999997654443322 34788999997421
Q ss_pred -ce-e--e---eccccc--cceeEEeecCCC--CEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 301 -TK-W--G---ELQHQT--SRILELSQSPDG--LTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 301 -~~-~--~---~~~~~~--~~i~~i~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
.. + . .++... +.|....|++.. ...+++-.+-.+.-+++.. ..+..|.++.+.+-|+-
T Consensus 285 n~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e----~~~pa~s~p~n~L~~s~ 353 (783)
T KOG1008|consen 285 NSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE----EVIPASSNPYNDLIFSF 353 (783)
T ss_pred ccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh----heecccCCCcccchhhh
Confidence 00 0 0 122222 467777777754 2334444444444444332 12223444666666653
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.76 E-value=2.7e-06 Score=75.09 Aligned_cols=137 Identities=18% Similarity=0.249 Sum_probs=100.9
Q ss_pred CcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 44 NDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
..++.++++-+.+.+..+++.|.+++|+-.+++..... ..+....+..+..|++..++|+|+..|.|.++.+..+....
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~-~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK-NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhccc-ccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 34467888877777888888999999998887764333 23445566777889999999999999999999887643221
Q ss_pred e------eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc---ceeeeeecccCcEEEEEEc
Q 040533 124 N------LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN---NVTSRINAHTAEVCGLKWS 182 (364)
Q Consensus 124 ~------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~v~~~~~~ 182 (364)
. -..|...|++++|++ ++..+++|...|.|..-.+.+.. .....+....+.|..+...
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred ceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 1 123788999999999 99999999999999988887621 1122333455777777765
No 332
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.72 E-value=2.9e-06 Score=73.87 Aligned_cols=203 Identities=19% Similarity=0.232 Sum_probs=124.2
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe---cC-CcEEEEecCCcceeeeeecCCCcEEEEEeecCC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY---MA-SKLQLWDAETSKLIRNLEGHDKRVATASWNHWN 141 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d-g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 141 (364)
.+.+-|.. +...+... .....+..-+|+|+++.++.-. .. ..+.++++++++....+. ..+.-...+|+| +
T Consensus 174 ~l~~~D~d-g~~~~~l~--~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fsp-D 248 (425)
T COG0823 174 ELALGDYD-GYNQQKLT--DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSP-D 248 (425)
T ss_pred eEEEEccC-CcceeEec--ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCC-C
Confidence 44454544 33322222 3355677789999998776543 22 359999999887665554 334445678999 6
Q ss_pred CCE-EEEeeCCCc--EEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CCe--EEEEeCCCCCCCcceEEec
Q 040533 142 GHI-LTSGSQDKS--IINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DNL--VHVWDHSKMSSSKCLHRFR 215 (364)
Q Consensus 142 ~~~-l~~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~ 215 (364)
++. +++...||. |.++|+..+. ...+....+.-..-.|+|||+.++..+. .|. |.++|.+... ...+.
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~----~~riT 322 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ----VTRLT 322 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc----eeEee
Confidence 654 455566775 5566776555 2233333333447789999998877653 444 5555554332 22222
Q ss_pred ccccceeEEEEccCCCcEEEeecCCCCCe--EEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeec
Q 040533 216 DHRAAVKALAWCPYQFNVLASGGGTQDGC--IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 216 ~~~~~v~~~~~~~~~~~~~~~~~g~~d~~--i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
.....-..-.|+|+|+.++.... .+|. |.+.|+.++...+.+..........|.+++..++...
T Consensus 323 ~~~~~~~~p~~SpdG~~i~~~~~--~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 323 FSGGGNSNPVWSPDGDKIVFESS--SGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred ccCCCCcCccCCCCCCEEEEEec--cCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEec
Confidence 22222236789999988887763 3455 7777777666566665555566677888887776553
No 333
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.71 E-value=7.4e-05 Score=61.73 Aligned_cols=235 Identities=11% Similarity=0.104 Sum_probs=145.6
Q ss_pred CeEEEEECCCCceeeeeeecCC-C----CCceEEEEcCCCCEEEEEe--cCCcEEEEecCCcceeeeeecCCCcEEEEEe
Q 040533 65 LELYLWKQENGEVQKLLKVTGE-D----DFPTSISWSQDAKTLAVGY--MASKLQLWDAETSKLIRNLEGHDKRVATASW 137 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~-~----~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 137 (364)
..|.+||..+........++.. . .....++++.|++++++.. -...|.|-|++.++.+..+.. .+...-
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~i--- 142 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWLI--- 142 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEEE---
T ss_pred eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEEE---
Confidence 4799999999887666666542 1 2335678899999888754 345799999999999888773 222222
Q ss_pred ecCCCCEEEEeeCCCcEEEEEcccCcceeee----eecccCcE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceE
Q 040533 138 NHWNGHILTSGSQDKSIINHDVRVSNNVTSR----INAHTAEV-CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 138 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 212 (364)
-|..++-|.+-+.||.+.-..+....+.... +.....++ ..-++...+..++-.+.+|.|+--|+.... .+...
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~ 221 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGK 221 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEE
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccC
Confidence 2324456888889999999988855443321 11112222 223344445556667889999998877543 12222
Q ss_pred Eecc----------cccceeEEEEccCCCcEEEeec----CC-CC--CeEEEEECCCCeEEEEEecCCCeEEEEEcCCcc
Q 040533 213 RFRD----------HRAAVKALAWCPYQFNVLASGG----GT-QD--GCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHK 275 (364)
Q Consensus 213 ~~~~----------~~~~v~~~~~~~~~~~~~~~~~----g~-~d--~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~ 275 (364)
.+.. -.+.-.-+++++....+++.-. |+ .| ..|-++|+.+++.+..+....++.++..+.+.+
T Consensus 222 ~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~ 301 (342)
T PF06433_consen 222 PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDK 301 (342)
T ss_dssp EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS
T ss_pred cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCC
Confidence 2211 1223345777766555554321 00 11 258888999999999999888899999999877
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeeeccc
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
-++.+.. ..++.+.+||..+++.+.++..
T Consensus 302 P~L~~~~----~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 302 PLLYALS----AGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp -EEEEEE----TTTTEEEEEETTT--EEEEE--
T ss_pred cEEEEEc----CCCCeEEEEeCcCCcEEeehhc
Confidence 4443311 2378999999999999988764
No 334
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.68 E-value=4.4e-05 Score=63.49 Aligned_cols=228 Identities=11% Similarity=0.062 Sum_probs=132.8
Q ss_pred CCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee--------
Q 040533 97 QDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR-------- 168 (364)
Q Consensus 97 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-------- 168 (364)
..++.|+.|+.+| +.+++.........+. +...|..+...| +-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578999999888 9999983333333332 333499999998 666666554 499999998765432210
Q ss_pred -----eecccCcEEEEE--EcCCC-CEEEEEeCCCeEEEEeCCCCC-CC-cceEEecccccceeEEEEccCCCcEEEeec
Q 040533 169 -----INAHTAEVCGLK--WSNEG-NLLASGGDDNLVHVWDHSKMS-SS-KCLHRFRDHRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 169 -----~~~~~~~v~~~~--~~~~~-~~l~~~~~d~~i~iwd~~~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
.......+..++ -...+ ..|+++ ....|.+|...... .. +..+.+. -...+.+++|.+ ..++.+.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~---~~i~v~~ 155 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG---NKICVGT 155 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC---CEEEEEe
Confidence 111223344444 11233 344444 45589988876532 22 3344443 357788999984 3344442
Q ss_pred CCCCCeEEEEECCCCeEEEEEecC-------------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee-
Q 040533 239 GTQDGCIKIWNVQKGTCIHSVDTK-------------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG- 304 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~- 304 (364)
.....+.|+.++.....+... .++..+.. +++.+|++. +..-.+.| ..|++.+
T Consensus 156 ---~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--------~~~g~fv~-~~G~~~r~ 222 (275)
T PF00780_consen 156 ---SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--------DNIGVFVN-KNGEPSRK 222 (275)
T ss_pred ---CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--------cceEEEEc-CCCCcCcc
Confidence 556889999977655443221 12333333 345666553 33333334 3444333
Q ss_pred -eccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 305 -ELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 305 -~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
.++... .+.++++ ...||++.+.+ .|.||++.+++.++.+..
T Consensus 223 ~~i~W~~-~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 223 STIQWSS-APQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIPL 265 (275)
T ss_pred cEEEcCC-chhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEEC
Confidence 233322 4556666 34588877665 599999999988887764
No 335
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.67 E-value=1.4e-05 Score=68.95 Aligned_cols=240 Identities=13% Similarity=0.152 Sum_probs=133.4
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCccee-------------------------------------------eee
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI-------------------------------------------RNL 125 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-------------------------------------------~~~ 125 (364)
.|+.+.|+++...|++|...|.|.||.....+.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4789999999889999999999999875322110 112
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee-eeec------ccCcEEEEEEcC-----CC---CEEEE
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS-RINA------HTAEVCGLKWSN-----EG---NLLAS 190 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~------~~~~v~~~~~~~-----~~---~~l~~ 190 (364)
....++|++++.+ +-.+++.|+++|.+.|.|++...-+.. .+.. ....++++.|+. |+ -.+++
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 2246789999986 778999999999999999975542221 1111 234677888863 33 37889
Q ss_pred EeCCCeEEEEeCCCCCCCcce----EEecccccceeEEE-EccC-C-------------------CcEEEeecCCCCCeE
Q 040533 191 GGDDNLVHVWDHSKMSSSKCL----HRFRDHRAAVKALA-WCPY-Q-------------------FNVLASGGGTQDGCI 245 (364)
Q Consensus 191 ~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~v~~~~-~~~~-~-------------------~~~~~~~~g~~d~~i 245 (364)
|...|.+.+|.+.-....... .....+.++|..+. ++.+ + +.+++..+ +..+
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS---e~~i 237 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS---ESDI 237 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE----SSEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc---ccce
Confidence 999999999987521111111 11123445555554 3211 1 12444443 7889
Q ss_pred EEEECCCCeEEEEEecC-CCeEEEEEc-----CCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc----cceeE
Q 040533 246 KIWNVQKGTCIHSVDTK-AQICGLEWN-----RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT----SRILE 315 (364)
Q Consensus 246 ~i~d~~~~~~~~~~~~~-~~v~~~~~~-----~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~----~~i~~ 315 (364)
+++...+.+........ .....+.+- ..+..|++-.. +|.+++|.++..+.+..++-+. ..+..
T Consensus 238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~------~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN------NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp EEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET------TSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred EEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC------CCcEEEEECCCchHhhcccCCCccccccccc
Confidence 99999888776655422 123334442 24444554433 9999999999999988776532 34566
Q ss_pred EeecCCCCEEEEEeCCCcEEEEEee
Q 040533 316 LSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 316 i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
..++++|..++-.+.. .+.++.+-
T Consensus 312 ssis~~Gdi~~~~gps-E~~l~sv~ 335 (395)
T PF08596_consen 312 SSISRNGDIFYWTGPS-EIQLFSVW 335 (395)
T ss_dssp -EE-TTS-EEEE-SSS-EEEEEEEE
T ss_pred cEECCCCCEEEEeCcc-cEEEEEEE
Confidence 7889999977766543 44444443
No 336
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.66 E-value=8.9e-05 Score=58.00 Aligned_cols=190 Identities=14% Similarity=0.104 Sum_probs=110.8
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEE-EE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVAT-AS 136 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~-~~ 136 (364)
++.++-.+.+.--|..+|++.-...+ ..++.+-+.- -|++++.|+..|.+++.+.++|.+...+.... .|.+ ..
T Consensus 26 v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~ 100 (354)
T KOG4649|consen 26 VVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQ 100 (354)
T ss_pred EEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceE
Confidence 55566678888888888876433333 3334333332 47789999999999999999998887776432 2222 22
Q ss_pred eecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc
Q 040533 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 137 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 216 (364)
..+ ++.++..|+.|++.+..|.++...+.+ .+...+...+-+..|-...|+.+...|.+.--..+... ...+-.
T Consensus 101 ~d~-~~glIycgshd~~~yalD~~~~~cVyk-skcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~----~~~~w~ 174 (354)
T KOG4649|consen 101 CDF-DGGLIYCGSHDGNFYALDPKTYGCVYK-SKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYS----STEFWA 174 (354)
T ss_pred EcC-CCceEEEecCCCcEEEecccccceEEe-cccCCceeccceecCCCceEEEEeccceEEEEccCCCC----cceehh
Confidence 334 899999999999999999987765333 33322333344455522344445555655444433221 111111
Q ss_pred --cccceeE--EEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCe
Q 040533 217 --HRAAVKA--LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQI 265 (364)
Q Consensus 217 --~~~~v~~--~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v 265 (364)
..+++.+ ++..+ .+..+. -||.+.-+| ..|+.+..+...++|
T Consensus 175 ~~~~~PiF~splcv~~---sv~i~~---VdG~l~~f~-~sG~qvwr~~t~GpI 220 (354)
T KOG4649|consen 175 ATRFGPIFASPLCVGS---SVIITT---VDGVLTSFD-ESGRQVWRPATKGPI 220 (354)
T ss_pred hhcCCccccCceeccc---eEEEEE---eccEEEEEc-CCCcEEEeecCCCce
Confidence 1222221 22222 333322 477777777 566666666555554
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.65 E-value=4.3e-05 Score=66.95 Aligned_cols=221 Identities=15% Similarity=0.130 Sum_probs=117.9
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEE-EcccCc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINH-DVRVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~-d~~~~~ 163 (364)
.....+..+.++|+|++++++ .+|...||.....+.... +.-...+|.+ .++ +|+-...+.|.++ +++...
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-T
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCcccc
Confidence 345568899999999999985 588999998444333221 2345678887 444 6666668889996 443222
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
...+.. ...+..+-. |.+|+..+.+ .|.+||..+. +.+..+... +|..+.|++++..+.+.+ +.
T Consensus 102 --~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~---~~i~~i~v~--~vk~V~Ws~~g~~val~t----~~ 165 (443)
T PF04053_consen 102 --VKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETG---KLIRRIDVS--AVKYVIWSDDGELVALVT----KD 165 (443)
T ss_dssp --T------SS-EEEEE----SSSEEEEETT-EEEEE-TTT-----EEEEESS---E-EEEEE-TTSSEEEEE-----S-
T ss_pred --ceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHc---ceeeEEecC--CCcEEEEECCCCEEEEEe----CC
Confidence 112211 123444432 7788777655 8999997764 447766532 489999999986655553 56
Q ss_pred eEEEEECCCC-----------eEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccc
Q 040533 244 CIKIWNVQKG-----------TCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS 311 (364)
Q Consensus 244 ~i~i~d~~~~-----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 311 (364)
.+.+++.... .....+. ....|.+..|..+ -++++. .+.++. +..|+ ...+..-..
T Consensus 166 ~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT--------~~~lkY--l~~Ge-~~~i~~ld~ 233 (443)
T PF04053_consen 166 SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT--------SNHLKY--LVNGE-TGIIAHLDK 233 (443)
T ss_dssp SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE---------TTEEEE--EETTE-EEEEEE-SS
T ss_pred eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc--------CCeEEE--EEcCC-cceEEEcCC
Confidence 7888775433 0233332 2678899999877 444443 335554 22222 222222235
Q ss_pred ceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 312 RILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 312 ~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
++.=+.+.|+.+.++....|+.|..+.+..
T Consensus 234 ~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 234 PLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp --EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 666677778777888888888888887654
No 338
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.63 E-value=2.8e-06 Score=73.75 Aligned_cols=133 Identities=16% Similarity=0.252 Sum_probs=91.0
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcC-CCCEEEEE----ecCCc----EEEEecCCcceee----eeecCCCcE
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-DAKTLAVG----YMASK----LQLWDAETSKLIR----NLEGHDKRV 132 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~----~~dg~----i~iw~~~~~~~~~----~~~~~~~~v 132 (364)
.+.++....++...+... ..+..+.++.||. +...+.+. +.+|. -.+|++..++..+ .+ .....|
T Consensus 185 Nl~L~~~~~~klEvL~yi-rTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v 262 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYI-RTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQV 262 (545)
T ss_pred cEEEEEecCCcEEEEEEE-EecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcc
Confidence 455555555544333332 3345567888886 33444432 23443 4567766554321 22 367889
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
.+++++| +.+.|+.|+.||.|.+||...+.. ......-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus 263 ~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t---~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 263 ICCARSP-SEDKLVLGCEDGSIILYDTTRGVT---LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred eEEecCc-ccceEEEEecCCeEEEEEcCCCee---eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9999999 999999999999999999875532 2223445678999999999999999999999999753
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.63 E-value=8.2e-07 Score=76.94 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=64.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
.....|.|++++|+.+.|+.|+.||.|.+||...+... +....-..+.++|+| ++.++++|+..|.+.+||+.-..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 45778999999999999999999999999998766333 223456678999999 99999999999999999987544
No 340
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.62 E-value=0.00019 Score=59.44 Aligned_cols=272 Identities=12% Similarity=0.128 Sum_probs=150.3
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe----------cCCcEEEEecCCcceeeeeecCCC-cEE
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY----------MASKLQLWDAETSKLIRNLEGHDK-RVA 133 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~-~v~ 133 (364)
+.++++|..+++..-.... +..-.+..+|+++.++++. ..-.|.+||.++-.....+.-..+ +..
T Consensus 17 ~rv~viD~d~~k~lGmi~~----g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT----GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE----ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcEEEEeec----ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 4899999999887655542 2344577899999888753 233599999999877765543322 222
Q ss_pred ------EEEeecCCCCEEEEee--CCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q 040533 134 ------TASWNHWNGHILTSGS--QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 134 ------~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 204 (364)
.++++. ++++++... ---.|.|.|+..++- ...+.. .+.. +.+ | .+.-+.+-+.||.+.-..+..
T Consensus 93 ~~~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kv-v~ei~~-PGC~--~iy-P~~~~~F~~lC~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 93 VVPYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKV-VGEIDT-PGCW--LIY-PSGNRGFSMLCGDGSLLTVTLDA 166 (342)
T ss_dssp BS--GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEE-EEEEEG-TSEE--EEE-EEETTEEEEEETTSCEEEEEETS
T ss_pred ecccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCce-eeeecC-CCEE--EEE-ecCCCceEEEecCCceEEEEECC
Confidence 234555 565555443 223566667664442 333321 2211 112 2 123577777899998888774
Q ss_pred CCCCcceE--Eecccccce-eEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE--EEEec-----------CCCeEEE
Q 040533 205 MSSSKCLH--RFRDHRAAV-KALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI--HSVDT-----------KAQICGL 268 (364)
Q Consensus 205 ~~~~~~~~--~~~~~~~~v-~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~-----------~~~v~~~ 268 (364)
........ .+.....++ ..-++...+..++... .+|.|+-.|+...... ..+.. .+...-+
T Consensus 167 ~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S---y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~ 243 (342)
T PF06433_consen 167 DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS---YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLI 243 (342)
T ss_dssp TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB---TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-E
T ss_pred CCCEeEeeccccCCCCcccccccceECCCCeEEEEe---cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeee
Confidence 33211111 111112222 2223333333333322 6899999998765432 22221 0223346
Q ss_pred EEcCCccceeeeccC-Ccc-CC--CCeEEEeeCCCCceeeeccccccceeEEeecCCCC-EEEEE-eCCCcEEEEEeeCC
Q 040533 269 EWNRHHKEILSGHGF-SSS-GD--GQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL-TVVSA-AADETLRFWEAFGP 342 (364)
Q Consensus 269 ~~~~~~~~l~~~~~~-~~~-~~--~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~-~~dg~i~vw~~~~~ 342 (364)
++++....|++-..- .-+ -. ...|.++|+.+++.+..+.. ..++.+|+.+.+.+ +|++. ..++.|.+||..++
T Consensus 244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred eeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 666655444432110 000 01 23588889999999998874 24678999998776 66554 45799999999999
Q ss_pred CCCcceec
Q 040533 343 SGSGDFVS 350 (364)
Q Consensus 343 ~~~~~~~~ 350 (364)
+.+.+...
T Consensus 323 k~~~~~~~ 330 (342)
T PF06433_consen 323 KLVRSIEQ 330 (342)
T ss_dssp -EEEEE--
T ss_pred cEEeehhc
Confidence 98887763
No 341
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.62 E-value=1.7e-08 Score=87.54 Aligned_cols=200 Identities=21% Similarity=0.287 Sum_probs=134.0
Q ss_pred ceeecccCCCc---cEEEE-EeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC-CCCEEEEEe----cCCcEEEEec
Q 040533 46 YYSNMMDWGRN---NILAI-ALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-DAKTLAVGY----MASKLQLWDA 116 (364)
Q Consensus 46 ~~~~~~~~~~~---~~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----~dg~i~iw~~ 116 (364)
.++.+++|.-+ -++++ ..+|.|.+-.............+++....++++|++ |.+.||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 35677776542 25554 467899888776544332233457888999999998 667888874 3567999999
Q ss_pred CCc--cee--eeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEE
Q 040533 117 ETS--KLI--RNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLAS 190 (364)
Q Consensus 117 ~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 190 (364)
.++ .+. ..+.+ -.....+++|.. +.+++.+|.....+.++|++... .....-.+..+..+...| .++++++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~--~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSL--DSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhh--hhhhhhhhhhcccceecCCCCCceec
Confidence 876 111 12222 334566889986 88899999999999999998432 111112334566677888 7778876
Q ss_pred EeCCCeEEEEe-CCCCCCCcceEEecc----cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 191 GGDDNLVHVWD-HSKMSSSKCLHRFRD----HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 191 ~~~d~~i~iwd-~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
-. ||.|.+|| .++.+ .++..+.. ....+..++|+|....++++.. ...++|+++|+..
T Consensus 214 ~~-dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~-RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS-RDSITIRLYDICV 276 (783)
T ss_pred cc-cCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhc-cCcceEEEecccc
Confidence 65 99999999 44332 22222222 2235889999999888888764 3568999999853
No 342
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.59 E-value=0.00011 Score=66.28 Aligned_cols=238 Identities=11% Similarity=0.113 Sum_probs=134.3
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC--CCCEEEEEe---------cCCcEEEEecCCcceeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ--DAKTLAVGY---------MASKLQLWDAETSKLIRN 124 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~---------~dg~i~iw~~~~~~~~~~ 124 (364)
+.+++++.++.|+-+|.++++..=......+...-..+.-+| .+..++.++ .+|.+.-+|.++|+.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 456666778999999999998754444332210000111122 224555554 367899999999998877
Q ss_pred eecCCCc--------------------E-EEEEeecCCCCEEEEeeCCC------------------cEEEEEcccCcce
Q 040533 125 LEGHDKR--------------------V-ATASWNHWNGHILTSGSQDK------------------SIINHDVRVSNNV 165 (364)
Q Consensus 125 ~~~~~~~--------------------v-~~~~~~~~~~~~l~~~~~dg------------------~i~~~d~~~~~~~ 165 (364)
+...... + ...++.+ .+..++.++.++ .|.-+|..+++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 6542110 1 1233444 456777776555 6888898888754
Q ss_pred eeeeecccC-----cEEEEEEc----CCCC---EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcE
Q 040533 166 TSRINAHTA-----EVCGLKWS----NEGN---LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNV 233 (364)
Q Consensus 166 ~~~~~~~~~-----~v~~~~~~----~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 233 (364)
-.....+.. ......+. -++. .++.++.+|.+...|.++++. +-..... ...++.+| + .+
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~---~W~~~~~---~~~~~~~~-~-~v 341 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL---ISARPEV---EQPMAYDP-G-LV 341 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE---eeEeEee---ccccccCC-c-eE
Confidence 432211110 00000111 1332 577888899999999887643 3332211 11233333 1 23
Q ss_pred EEeec---------------CCCCCeEEEEECCCCeEEEEEecC---------CCeEEEEEcCCccceeeeccCCccCCC
Q 040533 234 LASGG---------------GTQDGCIKIWNVQKGTCIHSVDTK---------AQICGLEWNRHHKEILSGHGFSSSGDG 289 (364)
Q Consensus 234 ~~~~~---------------g~~d~~i~i~d~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~~~~~~~~ 289 (364)
++... ...+|.+.-.|+.+|+.+-+.... .+...-.....+..++++ +.+
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g------~~d 415 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAG------AAD 415 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEE------CCC
Confidence 22110 114688999999999988776544 111110111234455555 349
Q ss_pred CeEEEeeCCCCceeeeccc
Q 040533 290 QKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 290 ~~i~i~d~~~~~~~~~~~~ 308 (364)
+.++.+|..+++.+.+.+.
T Consensus 416 G~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 416 GYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CeEEEEECCCCceeeEEEC
Confidence 9999999999999988764
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.53 E-value=3.7e-05 Score=67.11 Aligned_cols=240 Identities=15% Similarity=0.132 Sum_probs=136.5
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEee---CC-CcEEEEEcccCcceeeeeecccCcEEEEEEcCCC
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGS---QD-KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG 185 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d-g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (364)
.+.+-|.+ +.....+......+..-+|+| ++..++-.+ .. ..+.++++.++...... ...+.-...+|+|||
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--~~~g~~~~P~fspDG 249 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--NFNGNNGAPAFSPDG 249 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceee--ccCCccCCccCCCCC
Confidence 34444444 555555555566777888999 666554432 22 35889999877642221 233444567899999
Q ss_pred CEEEEEe-CCC--eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe--EEEEECCCCeEEEEEe
Q 040533 186 NLLASGG-DDN--LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC--IKIWNVQKGTCIHSVD 260 (364)
Q Consensus 186 ~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~--i~i~d~~~~~~~~~~~ 260 (364)
+.|+.+. .|| .|+++|+.... ...+....+.-..=.|+|+|+.++.+.. ..|. |.++|...+...+...
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~----~~~Lt~~~gi~~~Ps~spdG~~ivf~Sd--r~G~p~I~~~~~~g~~~~riT~ 323 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKN----LPRLTNGFGINTSPSWSPDGSKIVFTSD--RGGRPQIYLYDLEGSQVTRLTF 323 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCc----ceecccCCccccCccCCCCCCEEEEEeC--CCCCcceEEECCCCCceeEeec
Confidence 8776554 555 46667776544 2223333333346679999999888865 5554 6666666655533333
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCC-cEEEEEe
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE-TLRFWEA 339 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~vw~~ 339 (364)
....-..-.|+|+|++++.... . ..+-.|.+.|+.++..+..+. +......-.|.++|+.++..+.-+ .=.++.+
T Consensus 324 ~~~~~~~p~~SpdG~~i~~~~~-~--~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~ 399 (425)
T COG0823 324 SGGGNSNPVWSPDGDKIVFESS-S--GGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQGGGSVLSLV 399 (425)
T ss_pred cCCCCcCccCCCCCCEEEEEec-c--CCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccCCCCceEEEe
Confidence 3333337899999999987652 1 111347777776666433332 223334567778887665544322 2222222
Q ss_pred e-CCCCCcceeccCCceeeeeeccC
Q 040533 340 F-GPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 340 ~-~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
. +++....+....+.+..-+|+|.
T Consensus 400 s~~g~~~~~~~~~~~~~~~p~w~~~ 424 (425)
T COG0823 400 SLDGRVSRPLPLADGDVRVPAWSPV 424 (425)
T ss_pred eccceeEEEEeccCcceecccccCC
Confidence 2 22222233333445666666663
No 344
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.52 E-value=0.00036 Score=58.08 Aligned_cols=227 Identities=12% Similarity=0.085 Sum_probs=128.2
Q ss_pred ccEEEEEeCCeEEEEEC-CCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee----------
Q 040533 56 NNILAIALGLELYLWKQ-ENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN---------- 124 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------- 124 (364)
+.++.|+.+| +++++. .......... ...|..+...|+-+.|++-+ |+.+.++++..-.....
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~~----~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRILK----LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEee----cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 4566665555 999998 3333333332 33499999999888777764 69999999876543331
Q ss_pred ----eecCCCcEEEEE-eecCCCCEEEEeeCCCcEEEEEcccCc----ceeeeeecccCcEEEEEEcCCCCEEEEEeCCC
Q 040533 125 ----LEGHDKRVATAS-WNHWNGHILTSGSQDKSIINHDVRVSN----NVTSRINAHTAEVCGLKWSNEGNLLASGGDDN 195 (364)
Q Consensus 125 ----~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 195 (364)
.......+...+ -....+...++......|.+|.+.... ...+.+ .-...+.+++|. ++.++.|..++
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~~~~ 158 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGTSKG 158 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEeCCc
Confidence 011223444444 112134444444445588888887531 122333 234778899998 45777777554
Q ss_pred eEEEEeCCCCCCCcceEEecc----------cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE--EEecCC
Q 040533 196 LVHVWDHSKMSSSKCLHRFRD----------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH--SVDTKA 263 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~~~~~~ 263 (364)
..+.|+.+... ..+..... ...++..+... ++ .++++ .|..-.+.|. .|+..+ .+.=..
T Consensus 159 -f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-e~Ll~----~~~~g~fv~~-~G~~~r~~~i~W~~ 229 (275)
T PF00780_consen 159 -FYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQLS-DN-EFLLC----YDNIGVFVNK-NGEPSRKSTIQWSS 229 (275)
T ss_pred -eEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEeC-Cc-eEEEE----ecceEEEEcC-CCCcCcccEEEcCC
Confidence 78888885443 22221111 11233333333 33 34443 3454455554 444333 333334
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
...++++. ..++++.. ++.|.||++.+++.++.+...
T Consensus 230 ~p~~~~~~--~pyli~~~-------~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 230 APQSVAYS--SPYLIAFS-------SNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred chhEEEEE--CCEEEEEC-------CCEEEEEECcCCcEEEEEECC
Confidence 55556553 34665543 677999999999988877643
No 345
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=1.3e-06 Score=78.61 Aligned_cols=114 Identities=20% Similarity=0.402 Sum_probs=92.2
Q ss_pred CCCceEEEEcCCCCEEEEEe----cCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 87 DDFPTSISWSQDAKTLAVGY----MASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
....+-..|+|...++|+++ ..|.|.|| .++|++.+... -.-.+++++|+| ..-.|+.|-.-|.+.+|...+.
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-YPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-cceehhhhccCh-HHHHHhhccccceeEEEecCCc
Confidence 33445567999999999886 46889999 47777655433 233467799999 8999999999999999998766
Q ss_pred cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 163 NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+. ......|..+|..+.||++|..++++..-|.|.+|....
T Consensus 92 e~-htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 92 ET-HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ee-eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 53 556668999999999999999999999999999998764
No 346
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.49 E-value=0.00023 Score=63.81 Aligned_cols=223 Identities=9% Similarity=-0.012 Sum_probs=133.0
Q ss_pred CCCEEEEEec-CCcEEEEecCCcceeeeeec-CCCcEEEEEee--cCCCCEEEEeeC-------CC-----------cEE
Q 040533 98 DAKTLAVGYM-ASKLQLWDAETSKLIRNLEG-HDKRVATASWN--HWNGHILTSGSQ-------DK-----------SII 155 (364)
Q Consensus 98 ~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~~l~~~~~-------dg-----------~i~ 155 (364)
||++|..-.. +..|-..+++..++-+.+.- ....+..++|- | +..+++++++ || .+.
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p-~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIP-RTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccC-CccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 6778877653 55666667766655443331 22334444443 4 4444444332 33 344
Q ss_pred EEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC---C-eEEEEeCCCCCCCcceEEecccccceeEEEEccCCC
Q 040533 156 NHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD---N-LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF 231 (364)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 231 (364)
+.|.++.+....... ......++++++|+++++.+.+ | ++..-+.... ..+..+.. ..+ -++.++|+
T Consensus 219 vID~etmeV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~---d~~vvfni--~~i--ea~vkdGK 289 (635)
T PRK02888 219 AVDAETMEVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER---DWVVVFNI--ARI--EEAVKAGK 289 (635)
T ss_pred EEECccceEEEEEEe--CCCcccceECCCCCEEEEeccCcccCcceeeeccccC---ceEEEEch--HHH--HHhhhCCC
Confidence 555554332111111 1233557888888888877632 2 2222222111 01111110 000 12345676
Q ss_pred cEEEeecCCCCCeEEEEECCC-----CeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce----
Q 040533 232 NVLASGGGTQDGCIKIWNVQK-----GTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK---- 302 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~---- 302 (364)
+.++ .++.|.+.|.++ .+.+..+........+.++|+|++++++.. .++.+.++|+.+.+.
T Consensus 290 ~~~V-----~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank-----lS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 290 FKTI-----GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK-----LSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred EEEE-----CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC-----CCCcEEEEEChhhhhhhhc
Confidence 6555 257899999998 467778888889999999999999998764 389999999987653
Q ss_pred --------eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 303 --------WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 303 --------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
..+.+-.. .....+|+++|....|--.|..|..|++..
T Consensus 360 ~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33333222 235678999998888888999999999886
No 347
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.45 E-value=0.00092 Score=59.25 Aligned_cols=247 Identities=12% Similarity=0.120 Sum_probs=130.0
Q ss_pred ceEEEEcCCCCEEEEEe-cCC----cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC-----------c
Q 040533 90 PTSISWSQDAKTLAVGY-MAS----KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK-----------S 153 (364)
Q Consensus 90 v~~~~~s~~~~~l~~~~-~dg----~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------~ 153 (364)
+....+||+|+++|.+- ..| .++++|+++++.+...-.. .....+.|.+ +++.|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeC-CCCEEEEEEeCcccccccCCCCcE
Confidence 34678999999998763 344 4999999999776532111 1123399999 766655544222 3
Q ss_pred EEEEEcccCcce-eeeeecccCc--EEEEEEcCCCCEEEEEeC---C-CeEEEEeCCCCC-CCcceEEecccccce-eEE
Q 040533 154 IINHDVRVSNNV-TSRINAHTAE--VCGLKWSNEGNLLASGGD---D-NLVHVWDHSKMS-SSKCLHRFRDHRAAV-KAL 224 (364)
Q Consensus 154 i~~~d~~~~~~~-~~~~~~~~~~--v~~~~~~~~~~~l~~~~~---d-~~i~iwd~~~~~-~~~~~~~~~~~~~~v-~~~ 224 (364)
|+.|.+.+.... ...+...... ...+..++++++++.... + ..+.+.|+.... .......+......+ ..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 777777665432 2333333322 567889999998775432 2 457888877641 011233333333333 333
Q ss_pred EEccCCCcEEEeecCCCCCeEEEEECCCCeE---EEEE-ecCCC--eEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 225 AWCPYQFNVLASGGGTQDGCIKIWNVQKGTC---IHSV-DTKAQ--ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 225 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~-~~~~~--v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
... .+..++.+..+...+.|.-.++.+... ...+ ..... +..+.. .+.+|+.... -.....|+++++.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~---~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYR---ENGSSRLRVYDLD 357 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEE---ETTEEEEEEEETT
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEE---ECCccEEEEEECC
Confidence 333 443455554444668888889887652 2233 33332 444444 3444444321 0124578999998
Q ss_pred CCceeeecc-ccccceeEEeecCCCCEEE-EEeC---CCcEEEEEeeCCCC
Q 040533 299 HMTKWGELQ-HQTSRILELSQSPDGLTVV-SAAA---DETLRFWEAFGPSG 344 (364)
Q Consensus 299 ~~~~~~~~~-~~~~~i~~i~~~~~~~~l~-~~~~---dg~i~vw~~~~~~~ 344 (364)
.+.....+. ...+.|..+...+++..+. +.+. -+++..||+.+++.
T Consensus 358 ~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 358 DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp -TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 333333332 2334566666666655432 2221 35677777777654
No 348
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.44 E-value=0.00049 Score=60.33 Aligned_cols=195 Identities=12% Similarity=0.114 Sum_probs=101.7
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc-----eeeeeecccCcEEEEEEcCC
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN-----VTSRINAHTAEVCGLKWSNE 184 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~ 184 (364)
.|.||+. .|+.+..+.-..+.+.++.|+. .+.|++...||.+++||+..... ......-....+....+..+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCC
Confidence 4888875 4666666554448899999985 45666778999999999862220 01111111122223334445
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc---------ceeE-EEEccCCCcEEEeecCCCCCeEEEEECCCCe
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA---------AVKA-LAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------~v~~-~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 254 (364)
|-.++ ..++.+.+.. ..........+..-.. .... ..++.+....+... .++.+.+.+-...+
T Consensus 139 GivvL--t~~~~~~~v~--n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~---~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 139 GIVVL--TGNNRFYVVN--NIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA---NGETIYIIDENSFK 211 (410)
T ss_pred CEEEE--CCCCeEEEEe--CccccchhhccccCCCcccccccccccccceEeecCcceEEEEe---cCCEEEEEEccccc
Confidence 53333 3345454443 1111101111100000 0000 12333332222221 34455544432221
Q ss_pred EEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc-ccceeEEeecCCCC
Q 040533 255 CIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-TSRILELSQSPDGL 323 (364)
Q Consensus 255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~ 323 (364)
.+...+++..++.||+|++++.-.. +|.+.+....-.+.+.++... ......+.|.-+..
T Consensus 212 ---~i~~~~~i~~iavSpng~~iAl~t~------~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 212 ---QIDSDGPIIKIAVSPNGKFIALFTD------SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred ---cccCCCCeEEEEECCCCCEEEEEEC------CCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 1334578999999999999987653 788888887666666665543 34556777765543
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.44 E-value=4e-06 Score=74.02 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=107.4
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
...|.--+++..+++++.|+..|.+++|+-..++....-. +..+.+..+..++ +..++|.|+..|.|.++-+....+.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCC
Confidence 3445555566788999999999999999987765543322 2345566667788 8899999999999999988765432
Q ss_pred eeee-----ecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 166 TSRI-----NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK-MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 166 ~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
...+ ..|...|++++|++++..+++|...|+|..-.+.. ....-..+.+....+.|..+.... .+++++..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl- 188 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTL- 188 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhh-
Confidence 2211 23678999999999999999999999998887765 111112333333456676666554 24555432
Q ss_pred CCCCeEEEEECCC
Q 040533 240 TQDGCIKIWNVQK 252 (364)
Q Consensus 240 ~~d~~i~i~d~~~ 252 (364)
-...+++++.
T Consensus 189 ---~r~~Lc~tE~ 198 (726)
T KOG3621|consen 189 ---TRCILCQTEA 198 (726)
T ss_pred ---hhhheeecch
Confidence 2344555543
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.43 E-value=0.00051 Score=55.21 Aligned_cols=202 Identities=13% Similarity=0.186 Sum_probs=109.5
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc-cCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH-TAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
.+.+-...+..++|+|+++.++++....+.|..++.+ ++ ++..+.-. .+..-.+++..++.++++.-.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~-vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK-VLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC-EEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 3445556799999999556677778888888777764 33 34443322 356788999888877776656899999988
Q ss_pred CCCCCCcce---EEec-----ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC---CeEEEEEe---------cC
Q 040533 203 SKMSSSKCL---HRFR-----DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK---GTCIHSVD---------TK 262 (364)
Q Consensus 203 ~~~~~~~~~---~~~~-----~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~---------~~ 262 (364)
......... ..+. .++..+-.++|+|.+..++++- +..-..+|.+.. ...+.... .-
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeecccccccccccee
Confidence 443211111 1111 2445688999999887777764 344455555543 22222111 12
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc---------cceeEEeecCCCCEEEEEeCCCc
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT---------SRILELSQSPDGLTVVSAAADET 333 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~---------~~i~~i~~~~~~~~l~~~~~dg~ 333 (364)
..+.+++++|....++.-+ ..+..|..+| .+|+.+..+.-.. ...-.|+|.++|++. ..++-+.
T Consensus 171 ~d~S~l~~~p~t~~lliLS-----~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNl 243 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILS-----DESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNL 243 (248)
T ss_dssp S---EEEEETTTTEEEEEE-----TTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTE
T ss_pred ccccceEEcCCCCeEEEEE-----CCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCce
Confidence 3478899999765544432 3478888888 6666655443111 246789999999544 4456665
Q ss_pred EEEE
Q 040533 334 LRFW 337 (364)
Q Consensus 334 i~vw 337 (364)
.++|
T Consensus 244 fy~f 247 (248)
T PF06977_consen 244 FYRF 247 (248)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 351
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.001 Score=57.91 Aligned_cols=225 Identities=12% Similarity=0.132 Sum_probs=150.0
Q ss_pred CCceEEEEcCCCCEEEE-EecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeC---CCcEEEEEcccCc
Q 040533 88 DFPTSISWSQDAKTLAV-GYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ---DKSIINHDVRVSN 163 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~ 163 (364)
.....++.++.+..+.. ...++.|.+.|..+.+......-.. ....++++| +++.+..+.. ++++.+.|..+..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCe
Confidence 44567888888885544 4456899999988777776655332 567889999 6655555544 6888888887666
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCCc-ceEEecccccceeEEEEccCCCcEEEeecCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSSSK-CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 241 (364)
.... ...-..+ ..++++|+|+.++... .++.|.+.|.......+ .......-......+.++|++..+.++..++.
T Consensus 152 ~~~~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 152 VTAT-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EEEE-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence 5444 3332334 8899999999666665 78899999965532210 00001112233467899999987877765333
Q ss_pred CCeEEEEECCCCeEEEE-EecCC-CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc---cceeEE
Q 040533 242 DGCIKIWNVQKGTCIHS-VDTKA-QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT---SRILEL 316 (364)
Q Consensus 242 d~~i~i~d~~~~~~~~~-~~~~~-~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~---~~i~~i 316 (364)
++.+...|..++..... ..... ....+..+|+|..+.+... ..+.+.+.|..+........... ..+..+
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~-----~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~ 304 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS-----QGGTVSVIDGATDRVVKTGPTGNEALGEPVSI 304 (381)
T ss_pred CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec-----CCCeEEEEeCCCCceeeeecccccccccceec
Confidence 47999999998887765 22222 5678899999999988753 26889999988877776654332 234455
Q ss_pred eecCC
Q 040533 317 SQSPD 321 (364)
Q Consensus 317 ~~~~~ 321 (364)
++.+.
T Consensus 305 ~~~~~ 309 (381)
T COG3391 305 AISPL 309 (381)
T ss_pred cceee
Confidence 55443
No 352
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.40 E-value=0.00052 Score=53.85 Aligned_cols=101 Identities=8% Similarity=0.005 Sum_probs=68.3
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCce-EEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEE
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPT-SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVAT 134 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 134 (364)
+.++.++..|.+++.+.++|+....+...+ .|. .....+++..+..|+.|++.+..|..+...+...+...+...+
T Consensus 64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~---~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKTGSQIWNFVILE---TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS 140 (354)
T ss_pred CEEEEEEccCcEEEEEecchhheeeeeehh---hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceecc
Confidence 346677789999999999997554444322 222 2335678999999999999999999999888877655444455
Q ss_pred EEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 135 ASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
-+..| ....|..+...|.+.--...
T Consensus 141 P~i~~-g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 141 PVIAP-GDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred ceecC-CCceEEEEeccceEEEEccC
Confidence 55666 34444445555555444433
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.38 E-value=0.00066 Score=57.84 Aligned_cols=196 Identities=14% Similarity=0.122 Sum_probs=115.8
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEE---cCC----CCEEEEEec---------C-CcEEEEecCCc----ceee
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISW---SQD----AKTLAVGYM---------A-SKLQLWDAETS----KLIR 123 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~---s~~----~~~l~~~~~---------d-g~i~iw~~~~~----~~~~ 123 (364)
..|++.|..+.+......+.. ...+++++. ..+ ..++++|+. . |.|.++++.+. ..+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 468899988888777777754 344554443 322 468888864 2 88999999884 1222
Q ss_pred ee--ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee-eeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 124 NL--EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT-SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 124 ~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
.+ ....++|++++-. ++. |+++. ++.|.+|++...+.+. .........+.++... ++++++|.....+.++
T Consensus 81 ~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred EEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEE
Confidence 22 2357889988875 444 44333 4789999998777222 2222233456666655 5599999988888877
Q ss_pred eCCCCCCCcceEEec--ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-------Ce----EEEEEecCCCeEE
Q 040533 201 DHSKMSSSKCLHRFR--DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-------GT----CIHSVDTKAQICG 267 (364)
Q Consensus 201 d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-------~~----~~~~~~~~~~v~~ 267 (364)
..+... ..+..+. .....++++.|-+++. .++.+. .+|.+.++.... +. ....+..+..+++
T Consensus 155 ~~~~~~--~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D--~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~ 229 (321)
T PF03178_consen 155 RYDEEN--NKLILVARDYQPRWVTAAEFLVDED-TIIVGD--KDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNS 229 (321)
T ss_dssp EEETTT--E-EEEEEEESS-BEEEEEEEE-SSS-EEEEEE--TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEE
T ss_pred EEEccC--CEEEEEEecCCCccEEEEEEecCCc-EEEEEc--CCCeEEEEEECCCCcccccccccceeEEEEECCCccce
Confidence 544311 1122222 2345688888886665 444443 799999998752 22 3344556677877
Q ss_pred E---EEcC
Q 040533 268 L---EWNR 272 (364)
Q Consensus 268 ~---~~~~ 272 (364)
+ .+.|
T Consensus 230 ~~~~~l~~ 237 (321)
T PF03178_consen 230 FRRGSLIP 237 (321)
T ss_dssp EEE--SS-
T ss_pred EEEEEeee
Confidence 7 5555
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.37 E-value=0.00045 Score=60.71 Aligned_cols=222 Identities=14% Similarity=0.165 Sum_probs=114.3
Q ss_pred cceeecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 45 DYYSNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 45 ~~~~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
+++...+.++|+ +.++++.+|.-.++.....+... .+.-...+|.+.+ .+|+-..+++|.|+.--+.+...
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-------~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-------FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-------EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-------cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccce
Confidence 445778888885 58888999999999854443221 2234578899855 46666668889997433333333
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.++. ...+..+- .|.+|...+.+ .|.+||+.+++. +..+.. .+|..+.|++++++++..+.+ .+.+++..
T Consensus 104 ~i~~-~~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~-i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 104 SIKL-PFSVEKIF----GGNLLGVKSSD-FICFYDWETGKL-IRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp -----SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--E-EEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred EEcC-CcccceEE----cCcEEEEECCC-CEEEEEhhHcce-eeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 3432 12233332 37777776655 899999997764 554432 248999999999999998865 57777644
Q ss_pred CC--------CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCcc
Q 040533 204 KM--------SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHK 275 (364)
Q Consensus 204 ~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~ 275 (364)
.. ........+..-...|.+..|..+ .++.+. .+.++. +..|+.-.......++.-+.+.+...
T Consensus 174 ~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT----~~~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~ 245 (443)
T PF04053_consen 174 LEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT----SNHLKY--LVNGETGIIAHLDKPLYLLGYLPKEN 245 (443)
T ss_dssp HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-----TTEEEE--EETTEEEEEEE-SS--EEEEEETTTT
T ss_pred chhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc----CCeEEE--EEcCCcceEEEcCCceEEEEEEccCC
Confidence 32 000123333333678999999876 455543 236766 44454433323345566666666545
Q ss_pred ceeeeccCCccCCCCeEEEeeCC
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
.++.... ++.+..+.+.
T Consensus 246 ~ly~~Dr------~~~v~~~~ld 262 (443)
T PF04053_consen 246 RLYLIDR------DGNVISYELD 262 (443)
T ss_dssp EEEEE-T------T--EEEEE--
T ss_pred EEEEEEC------CCCEEEEEEC
Confidence 5554422 5566665543
No 355
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.35 E-value=0.00028 Score=60.85 Aligned_cols=229 Identities=17% Similarity=0.207 Sum_probs=129.1
Q ss_pred eeecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCC----------------CCCceEEEEcCCCCEEEEEecC-
Q 040533 47 YSNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGE----------------DDFPTSISWSQDAKTLAVGYMA- 108 (364)
Q Consensus 47 ~~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~~d- 108 (364)
......|+|+ +.++...++.|++++..+++..++.. .+. -+.-..+-||||+++||....|
T Consensus 44 ~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~-dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~ 122 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTT-DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE 122 (353)
T ss_dssp TBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-
T ss_pred ccccceeecCCCeeEEEecCceEEEECCCCCeEEecc-ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECC
Confidence 3666788986 58888889999999988876544433 120 1233678899999999886532
Q ss_pred Cc-----------------------------------EEEEecCCcceeee-e----ecCCCcEEEEEeecCCCCEEEEe
Q 040533 109 SK-----------------------------------LQLWDAETSKLIRN-L----EGHDKRVATASWNHWNGHILTSG 148 (364)
Q Consensus 109 g~-----------------------------------i~iw~~~~~~~~~~-~----~~~~~~v~~~~~~~~~~~~l~~~ 148 (364)
.. +.|+|+.+++.... . ......+..+.|.+ ++..|+..
T Consensus 123 ~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~ 201 (353)
T PF00930_consen 123 REVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQ 201 (353)
T ss_dssp TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEE
T ss_pred cCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEE
Confidence 11 34445544443211 1 12344677888988 66633333
Q ss_pred --eCCC---cEEEEEcccCcceeeeeecccCcE---EEEEEc-CCCC-EEEEEeCCCeEEE--EeCCCCCCCcceEEecc
Q 040533 149 --SQDK---SIINHDVRVSNNVTSRINAHTAEV---CGLKWS-NEGN-LLASGGDDNLVHV--WDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 149 --~~dg---~i~~~d~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~-~l~~~~~d~~i~i--wd~~~~~~~~~~~~~~~ 216 (364)
.++. .+.++|..++.............| ....|. +++. ++.....+|.-++ ++.... ....+..
T Consensus 202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~ 277 (353)
T PF00930_consen 202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTS 277 (353)
T ss_dssp EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-
T ss_pred EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceecccc
Confidence 3332 466677766553222222222222 244554 5544 5555557775444 454332 2344544
Q ss_pred ccccee-EEEEccCCCcEEEeecC--CCCCeEEEEECCCCeEEEEEecCCCe-EEEEEcCCccceeeec
Q 040533 217 HRAAVK-ALAWCPYQFNVLASGGG--TQDGCIKIWNVQKGTCIHSVDTKAQI-CGLEWNRHHKEILSGH 281 (364)
Q Consensus 217 ~~~~v~-~~~~~~~~~~~~~~~~g--~~d~~i~i~d~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~ 281 (364)
..-.|. -+.+++++..++.++.+ .....|...++..+.....+...... ..+.|||++++++...
T Consensus 278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 455564 47788888888777752 12346777777734445555555444 4999999999988654
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.31 E-value=0.00011 Score=68.07 Aligned_cols=144 Identities=15% Similarity=0.183 Sum_probs=100.8
Q ss_pred CCEEEEE-ecCCcEEEEecCCcceeeeeecCCCc-EEEEEee----cCCCCEEEEeeCCCcEEEEEcccCcceeeeee--
Q 040533 99 AKTLAVG-YMASKLQLWDAETSKLIRNLEGHDKR-VATASWN----HWNGHILTSGSQDKSIINHDVRVSNNVTSRIN-- 170 (364)
Q Consensus 99 ~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~----~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-- 170 (364)
.++|+.- .....|+-.|++.|+.+.....+... |..++=. ..+...-+.|-.+..+..||.+.....+..-.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 34578999999999999999877654 5544321 11234556777888999999987542121111
Q ss_pred --cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEE
Q 040533 171 --AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248 (364)
Q Consensus 171 --~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~ 248 (364)
.......|++-+.+| +||+|+.+|.|++||--. .+.-..+.+-..+|..|..+.||+++|+|+ +..+.++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g---~~AKT~lp~lG~pI~~iDvt~DGkwilaTc----~tyLlLi 644 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG---KRAKTALPGLGDPIIGIDVTADGKWILATC----KTYLLLI 644 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc---hhhhhcCCCCCCCeeEEEecCCCcEEEEee----cceEEEE
Confidence 233456788877777 799999999999999322 122334556678999999999999999986 6788888
Q ss_pred EC
Q 040533 249 NV 250 (364)
Q Consensus 249 d~ 250 (364)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 86
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=6.1e-06 Score=72.04 Aligned_cols=95 Identities=17% Similarity=0.279 Sum_probs=80.6
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEE-EEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVA-TASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
...+.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++..++..++ +++|.| +|+.|+.|-.||+|++.|++++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 3457789999999999999999999999988 777888887888888 999999 8999999999999999999988765
Q ss_pred eeeeecccCcEEEEEEcC
Q 040533 166 TSRINAHTAEVCGLKWSN 183 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~ 183 (364)
......-...|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 544444556788888864
No 358
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.21 E-value=0.00083 Score=53.90 Aligned_cols=172 Identities=17% Similarity=0.203 Sum_probs=114.1
Q ss_pred cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC-CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH-DKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 84 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
.+-...+.++.|+|+.+.|++......-.|+=..+|+.++++.-. -.....+.+.. ++.+.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 355666999999999999988887777777777788988876521 22344567775 6777777677888888877654
Q ss_pred cceee---------eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc-------ccceeEEEE
Q 040533 163 NNVTS---------RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH-------RAAVKALAW 226 (364)
Q Consensus 163 ~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~~~v~~~~~ 226 (364)
..... .....+.....++|.|....|..+-+..-+.||.+......-.......+ -..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 32111 11112556788999998888888888887888776543221111111111 234678889
Q ss_pred ccCCCcEEEeecCCCCCeEEEEECCCCeEEEEE
Q 040533 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV 259 (364)
Q Consensus 227 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 259 (364)
++....+++-+. +++.+.-.|.. |..+..+
T Consensus 241 ~~~~~~LLVLS~--ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 241 NAITNSLLVLSD--ESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred cCCCCcEEEEec--CCceEEEEecC-CCeeeeE
Confidence 987778888765 77777777764 4444443
No 359
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.19 E-value=0.0048 Score=56.12 Aligned_cols=284 Identities=11% Similarity=0.064 Sum_probs=155.2
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCC--Cc-------eEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDD--FP-------TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~--~v-------~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
+.+++++.++.|+-+|..+++..=......... .. ..+++ .+..++.++.++.+.-.|.++|+.+....
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 345666677899999999998643333211111 00 01122 23467778889999999999999887654
Q ss_pred cC--C--CcEEE-EEeecCCCCEEEEee------CCCcEEEEEcccCcceeeeeeccc----------------------
Q 040533 127 GH--D--KRVAT-ASWNHWNGHILTSGS------QDKSIINHDVRVSNNVTSRINAHT---------------------- 173 (364)
Q Consensus 127 ~~--~--~~v~~-~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~---------------------- 173 (364)
.. . ..+.+ .... ++ .++.+. .+|.|..+|.++++.+-.......
T Consensus 148 ~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 21 1 01111 1111 34 444443 268899999988775433111110
Q ss_pred --------CcE-EEEEEcCCCCEEEEEeCC-----C-----------eEEEEeCCCCCCCcceEEecccccce-------
Q 040533 174 --------AEV-CGLKWSNEGNLLASGGDD-----N-----------LVHVWDHSKMSSSKCLHRFRDHRAAV------- 221 (364)
Q Consensus 174 --------~~v-~~~~~~~~~~~l~~~~~d-----~-----------~i~iwd~~~~~~~~~~~~~~~~~~~v------- 221 (364)
..+ ..+++.|+..+++.+... + .|.-.|+++++. .-.++.....+
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~---~W~~Q~~~~D~wD~d~~~ 301 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI---KWHYQTTPHDEWDYDGVN 301 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE---EEeeeCCCCCCccccCCC
Confidence 011 124566655666665522 1 455556555432 33332211111
Q ss_pred --eEEEEccCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEec------------C--CC-------------------
Q 040533 222 --KALAWCPYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDT------------K--AQ------------------- 264 (364)
Q Consensus 222 --~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~------------~--~~------------------- 264 (364)
.-+....+++ .+++.+. .+|.+.+.|.++|+.+...+. . .+
T Consensus 302 ~p~l~d~~~~G~~~~~v~~~~--K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~ 379 (527)
T TIGR03075 302 EMILFDLKKDGKPRKLLAHAD--RNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGV 379 (527)
T ss_pred CcEEEEeccCCcEEEEEEEeC--CCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEE
Confidence 1122223454 4666655 899999999999988622100 0 00
Q ss_pred ---------eEEEEEcCCccceeeeccCC---------------------------ccCCCCeEEEeeCCCCceeeeccc
Q 040533 265 ---------ICGLEWNRHHKEILSGHGFS---------------------------SSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 265 ---------v~~~~~~~~~~~l~~~~~~~---------------------------~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
-..++++|+..++++..... ....-+.|.-+|+.+++..-+.+.
T Consensus 380 ~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~ 459 (527)
T TIGR03075 380 CPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKE 459 (527)
T ss_pred CCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecC
Confidence 01255666655555432210 001235688888888888776653
Q ss_pred cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 309 QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
......+. ..-.+.+++.++.||.++.+|.++++.+..+..
T Consensus 460 ~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 460 DFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 22111121 112455777888899999999999998876653
No 360
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.3e-05 Score=70.10 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=80.5
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccccee-EEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL-ELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
...+..+.|+|.-..+|.+.. +|.+.+..+. .+.+.++..|...++ +++|.|||+.||.|-.||+|++.|++
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~------~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTE------KGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred ccceEEEEEcCccchhheecc------CCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 456888999999999998865 8999999888 888888887777777 99999999999999999999999999
Q ss_pred CCCCCccee-ccCCceeeeeeccC
Q 040533 341 GPSGSGDFV-SHLDGLLSLKVSPI 363 (364)
Q Consensus 341 ~~~~~~~~~-~~~~~v~~~~~sp~ 363 (364)
++..+..+. .....|.++-|+|.
T Consensus 93 ~~~~l~~~~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 93 KGGRLVSFLFSVETDISKGIWDRI 116 (665)
T ss_pred CCCceeccccccccchheeecccc
Confidence 998877632 34667888888753
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.13 E-value=0.0028 Score=56.22 Aligned_cols=199 Identities=12% Similarity=0.113 Sum_probs=110.9
Q ss_pred EEEEEeecCCCCEEEEe-eCCC----cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC-----------C
Q 040533 132 VATASWNHWNGHILTSG-SQDK----SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD-----------N 195 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~-~~dg----~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~ 195 (364)
+....++| ++++++.+ +..| .++++|+.+++.+...+.... ...+.|.++++.|+....+ .
T Consensus 126 ~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 44677899 88877755 4444 599999998865433333221 1239999998877665533 2
Q ss_pred eEEEEeCCCCCCCcceEEecccccc--eeEEEEccCCCcEEEeecCCCC-CeEEEEECCCC-----eEEEEEecCCCe-E
Q 040533 196 LVHVWDHSKMSSSKCLHRFRDHRAA--VKALAWCPYQFNVLASGGGTQD-GCIKIWNVQKG-----TCIHSVDTKAQI-C 266 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~g~~d-~~i~i~d~~~~-----~~~~~~~~~~~v-~ 266 (364)
.|+.|++.+.... -...+...... ...+..+++++++++......+ ..+.+.|+..+ ...........+ .
T Consensus 203 ~v~~~~~gt~~~~-d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 203 QVYRHKLGTPQSE-DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred EEEEEECCCChHh-CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 4788887665332 12333332222 5678899999888875543344 67999999875 333333333333 3
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce---eeecccccc--ceeEEeecCCCCEEE-EEeCCC--cEEEEE
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK---WGELQHQTS--RILELSQSPDGLTVV-SAAADE--TLRFWE 338 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~--~i~~i~~~~~~~~l~-~~~~dg--~i~vw~ 338 (364)
.+... .+.+++... -....+.|.-.++..... ...+..+.. .+..+.. .+.+|+ ....++ .|++++
T Consensus 282 ~v~~~-~~~~yi~Tn---~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 282 YVDHH-GDRLYILTN---DDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp EEEEE-TTEEEEEE----TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEE
T ss_pred EEEcc-CCEEEEeeC---CCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEE
Confidence 44444 443443332 124467888888887663 224444544 3445544 444444 444454 377788
Q ss_pred ee
Q 040533 339 AF 340 (364)
Q Consensus 339 ~~ 340 (364)
+.
T Consensus 356 ~~ 357 (414)
T PF02897_consen 356 LD 357 (414)
T ss_dssp TT
T ss_pred CC
Confidence 77
No 362
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.13 E-value=0.005 Score=54.10 Aligned_cols=194 Identities=9% Similarity=0.098 Sum_probs=102.3
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee-------eecCCCcEEEEEee
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN-------LEGHDKRVATASWN 138 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------~~~~~~~v~~~~~~ 138 (364)
.|.+|+...... ....... +.|.++.|+.+.+ |++-..||.+++||+. |+.... ..-....+....+.
T Consensus 62 ~I~iys~sG~ll-~~i~w~~--~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSGKLL-SSIPWDS--GRIVGMGWTDDEE-LVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCCCEe-EEEEECC--CCEEEEEECCCCe-EEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccC
Confidence 589998765543 3444433 7899999998655 4455589999999986 333111 11111222222332
Q ss_pred cCCCCEEEEeeCCCcEEEEEcccCcceeeeee---c-----ccC-cEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCCCC
Q 040533 139 HWNGHILTSGSQDKSIINHDVRVSNNVTSRIN---A-----HTA-EVC-GLKWSNEGNLLASGGDDNLVHVWDHSKMSSS 208 (364)
Q Consensus 139 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~-----~~~-~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 208 (364)
. +|-.++ ..++.+.+..-.........+. . +.. ... -..++.+....+....++.+.+.+-...
T Consensus 137 ~-~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--- 210 (410)
T PF04841_consen 137 K-NGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--- 210 (410)
T ss_pred C-CCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc---
Confidence 2 342222 3344444332111110001110 0 000 000 0224444444555555556664442211
Q ss_pred cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--CCeEEEEEcCCccce
Q 040533 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--AQICGLEWNRHHKEI 277 (364)
Q Consensus 209 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l 277 (364)
..+. ..+++..++.||+++.+.... .+|.+.+.+..-.+....+... .....+.|..+...+
T Consensus 211 ---~~i~-~~~~i~~iavSpng~~iAl~t---~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 211 ---KQID-SDGPIIKIAVSPNGKFIALFT---DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV 274 (410)
T ss_pred ---cccc-CCCCeEEEEECCCCCEEEEEE---CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence 1111 246899999999997655543 5899999887666666666655 567788887664433
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.12 E-value=0.00044 Score=64.31 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=91.6
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcC-----CCCEEEEEecCCcEEEEecCCc--ceeee-ee--cCCCcEE
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-----DAKTLAVGYMASKLQLWDAETS--KLIRN-LE--GHDKRVA 133 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~iw~~~~~--~~~~~-~~--~~~~~v~ 133 (364)
.+.|+-.|++.|+++....+.. ..+|..++-.. +....+.|-.+..+..||.+-. +++.. .. .......
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~-~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHD-DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCceEEEecCCCcEEEEeecCC-CcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4789999999999877666522 23344443221 1234566777889999998743 22211 10 1344567
Q ss_pred EEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 134 TASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
|++-+ ...+||+|+.+|.|++||- .+......+.+...+|..|..+.||++++..+ +..+.+++.
T Consensus 582 ~~aTt--~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 582 CFATT--EDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEEec--CCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 77665 5568999999999999994 34444566777789999999999999888666 556777775
No 364
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=98.10 E-value=0.0039 Score=51.76 Aligned_cols=232 Identities=13% Similarity=0.173 Sum_probs=110.2
Q ss_pred cceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeec-CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC-ccee
Q 040533 45 DYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVT-GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET-SKLI 122 (364)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-~~~~ 122 (364)
++....+.+..+...+++..+.| +...+.++.=....+. .-......+....++..+++ +..|. ||...+ |+.-
T Consensus 61 ~~~l~~I~f~~~~g~ivG~~g~l-l~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~--iy~T~DgG~tW 136 (302)
T PF14870_consen 61 DYHLNSISFDGNEGWIVGEPGLL-LHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGA--IYRTTDGGKTW 136 (302)
T ss_dssp --EEEEEEEETTEEEEEEETTEE-EEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT----EEEESSTTSSE
T ss_pred eeeEEEEEecCCceEEEcCCceE-EEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCc--EEEeCCCCCCe
Confidence 34566677766655666666643 3334444322222111 11233344444444433333 34454 333333 3322
Q ss_pred -eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 123 -RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 123 -~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
.....-...+..+..++ ++.+++++.......-||.-... -......-...|..|.|.|++.+.+.+ ..|.|+.=+
T Consensus 137 ~~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp EEEE-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred eEcccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCcc-ceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 22334456788888888 99988888766666677753221 122223346789999999998776654 788888876
Q ss_pred CCC-CCC-CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec----CCCeEEEEEcCCcc
Q 040533 202 HSK-MSS-SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT----KAQICGLEWNRHHK 275 (364)
Q Consensus 202 ~~~-~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~v~~~~~~~~~~ 275 (364)
... .+. .+.+.......-.+..++|.+++ .+.++|+ .|. .+.....|+.-+.... ...+..+.|.++.+
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg---~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~ 288 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGG---SGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK 288 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES---TT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTE
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCC-CEEEEeC---Ccc-EEEeCCCCccceECccccCCCCceEEEEEcCCCc
Confidence 211 110 01111111122347889999876 6677665 553 3445566665555432 35588899888777
Q ss_pred ceeeeccCCccCCCCeEEEe
Q 040533 276 EILSGHGFSSSGDGQKLCLW 295 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~ 295 (364)
-++.|. +|.|.-|
T Consensus 289 gf~lG~-------~G~ll~~ 301 (302)
T PF14870_consen 289 GFVLGQ-------DGVLLRY 301 (302)
T ss_dssp EEEE-S-------TTEEEEE
T ss_pred eEEECC-------CcEEEEe
Confidence 777764 7776544
No 365
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.10 E-value=0.0013 Score=57.10 Aligned_cols=212 Identities=15% Similarity=0.156 Sum_probs=111.9
Q ss_pred cEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc------------------------------------------eeee
Q 040533 131 RVATASWNHWNGHILTSGSQDKSIINHDVRVSNN------------------------------------------VTSR 168 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~------------------------------------------~~~~ 168 (364)
.|+.+.|.+ +...|++|...|.|.+|.....+. +...
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 478888988 777888888899988886643211 1112
Q ss_pred eecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEE--ecc------cccceeEEEEcc-----CC--CcE
Q 040533 169 INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR--FRD------HRAAVKALAWCP-----YQ--FNV 233 (364)
Q Consensus 169 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~------~~~~v~~~~~~~-----~~--~~~ 233 (364)
+....++|++++.|.-| ++|.|.++|.+.|.|+|.+.. +.. +.. ....++++.|.- |+ .-+
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPav---I~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAV---IYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEE---EEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeE---EeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 23346789999998655 999999999999999986432 332 111 234577787751 22 124
Q ss_pred EEeecCCCCCeEEEEECCC---CeE----EEEE-ecCCCeEEEE-EcCCccceeeec--------------cCCccCCCC
Q 040533 234 LASGGGTQDGCIKIWNVQK---GTC----IHSV-DTKAQICGLE-WNRHHKEILSGH--------------GFSSSGDGQ 290 (364)
Q Consensus 234 ~~~~~g~~d~~i~i~d~~~---~~~----~~~~-~~~~~v~~~~-~~~~~~~l~~~~--------------~~~~~~~~~ 290 (364)
+.+|. ..|.+.+|.+.- +.. .... ...+++..+. ++.+...-+.+. ++.....+.
T Consensus 158 L~vGT--n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~ 235 (395)
T PF08596_consen 158 LLVGT--NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES 235 (395)
T ss_dssp EEEEE--TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred EEEEe--CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence 44543 789999998741 211 1111 2334554443 322211100000 000112288
Q ss_pred eEEEeeCCCCceeeeccccccceeEEee-----cCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 291 KLCLWKYPHMTKWGELQHQTSRILELSQ-----SPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 291 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~-----~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
.++++...+.+...+.....-....+.+ ...+..|++-..+|.|+++.+..-+.+....
T Consensus 236 ~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp EEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred ceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 8999999887776654422222333444 2356678888999999999988766655443
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.02 E-value=0.0058 Score=51.07 Aligned_cols=218 Identities=15% Similarity=0.139 Sum_probs=124.9
Q ss_pred ccCCCcc--EEEEE-eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 51 MDWGRNN--ILAIA-LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 51 ~~~~~~~--~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
-.|.++. ++-+. ..+.|.-|+..+++.. .+. +.+.+.++..-..+..|+++. .-+.+++.+++.....+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~---~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP---SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE---CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecc
Confidence 3455543 33332 4689999998877643 222 233445555544555555553 3377777766655333221
Q ss_pred -----CCCcEEEEEeecCCCCEEEEeeC-----C----CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC
Q 040533 128 -----HDKRVATASWNHWNGHILTSGSQ-----D----KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD 193 (364)
Q Consensus 128 -----~~~~v~~~~~~~~~~~~l~~~~~-----d----g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 193 (364)
.....+.+...| ++.+.++... . ..-.+|.+.......+....+-..-+.++||||++.|+.+..
T Consensus 104 ~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 123455677777 7766655433 0 111344444223335555555566688999999987777765
Q ss_pred C-CeEEEEeCCC--CCCCc--ceEEecccccceeEEEEccCCCcEEEeecCCCC-CeEEEEECCCCeEEEEEecC-CCeE
Q 040533 194 D-NLVHVWDHSK--MSSSK--CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD-GCIKIWNVQKGTCIHSVDTK-AQIC 266 (364)
Q Consensus 194 d-~~i~iwd~~~--~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-~~i~i~d~~~~~~~~~~~~~-~~v~ 266 (364)
. +.|.-|++.. ..... ....+....+..-.++...+| ++.+++. .. +.|..|+.. ++.+..+..+ ..++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~--~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG-NLWVAAV--WGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC-CEEEecc--cCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 4 7788887652 11111 122222334556677888888 4443332 23 389999988 9999888877 6677
Q ss_pred EEEEcC-Cccceee
Q 040533 267 GLEWNR-HHKEILS 279 (364)
Q Consensus 267 ~~~~~~-~~~~l~~ 279 (364)
+++|-- +.+.|++
T Consensus 259 ~~~FgG~~~~~L~i 272 (307)
T COG3386 259 NPAFGGPDLNTLYI 272 (307)
T ss_pred cceEeCCCcCEEEE
Confidence 777753 3344433
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.99 E-value=0.0027 Score=53.01 Aligned_cols=213 Identities=11% Similarity=0.048 Sum_probs=119.1
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR 215 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 215 (364)
.|.+..+.++.+--..+.|.-|+..++.. ..+.. ...+.++..-..+..|+++. . -+.+++.........+....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~~-p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK--RVFPS-PGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEEC-CCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEecccc
Confidence 56673334556666778888888876653 22322 23334443333444555443 3 36666664332211111111
Q ss_pred -c-cccceeEEEEccCCCcEEEeec-----C---CCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCC
Q 040533 216 -D-HRAAVKALAWCPYQFNVLASGG-----G---TQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFS 284 (364)
Q Consensus 216 -~-~~~~v~~~~~~~~~~~~~~~~~-----g---~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~ 284 (364)
+ .....+.+...|+|...+.+.+ - ..-|.|+.+|. .+..++.+.. -..-+.++|||+++.++....
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT-- 182 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT-- 182 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC--
Confidence 1 1234567888899855544432 0 11244444444 4555555544 345688999999998887752
Q ss_pred ccCCCCeEEEeeCCC--Cce-----eeeccccccceeEEeecCCCCEEEEEeCCC-cEEEEEeeCCCCCcceeccCCcee
Q 040533 285 SSGDGQKLCLWKYPH--MTK-----WGELQHQTSRILELSQSPDGLTVVSAAADE-TLRFWEAFGPSGSGDFVSHLDGLL 356 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~--~~~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~v~ 356 (364)
..+.|.-|++.. +.. ...+....+..-.++...+|.+.+++-.+| .|.+|+.. ++++..+..+...++
T Consensus 183 ---~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 183 ---PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred ---CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 357788887752 111 111222334556678888888776555554 89999988 777776665545566
Q ss_pred eeee
Q 040533 357 SLKV 360 (364)
Q Consensus 357 ~~~~ 360 (364)
+++|
T Consensus 259 ~~~F 262 (307)
T COG3386 259 NPAF 262 (307)
T ss_pred cceE
Confidence 6665
No 368
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.93 E-value=0.0036 Score=53.38 Aligned_cols=132 Identities=15% Similarity=0.147 Sum_probs=87.3
Q ss_pred CeEEEEECCCC-----ceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc-eeeeee-cCCCcEEEEEe
Q 040533 65 LELYLWKQENG-----EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-LIRNLE-GHDKRVATASW 137 (364)
Q Consensus 65 ~~i~iw~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~-~~~~~v~~~~~ 137 (364)
|.|.++++... +...+... ...++|++++-- ++ +|+++. ++.|.+|++...+ ....-. .....+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999884 33333332 457889998866 34 455554 5899999998877 443322 12335666665
Q ss_pred ecCCCCEEEEeeCCCcEEEEEcccCcc-eeeee-ecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 138 NHWNGHILTSGSQDKSIINHDVRVSNN-VTSRI-NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 138 ~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.+++++.|+....+.++..+.... +...- ......++++.|-++++.++.+..+|.+.++...
T Consensus 138 ---~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 138 ---FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ---ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ---cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 567999999888888886654332 22222 2234568888888666799999999999999875
No 369
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.93 E-value=2.6e-05 Score=42.42 Aligned_cols=38 Identities=29% Similarity=0.533 Sum_probs=33.1
Q ss_pred ceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 301 TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 301 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
+++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556667888999999999999999999999999996
No 370
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.88 E-value=0.013 Score=50.12 Aligned_cols=236 Identities=17% Similarity=0.239 Sum_probs=116.6
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcce---eeee----ecCCCcEEEEEeecC---CCCEEEEeeCC-------
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKL---IRNL----EGHDKRVATASWNHW---NGHILTSGSQD------- 151 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~~l~~~~~d------- 151 (364)
..+.|+|.|||+++++ ...|.|++++ ..+.. +..+ .........++++|. ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4678999999987765 4699999999 44443 2222 224567889999982 23334433321
Q ss_pred -CcEEEEEcccC-------cceeeeeec---ccCcEEEEEEcCCCCEEEEEeCCC-------------eEEEEeCCCCC-
Q 040533 152 -KSIINHDVRVS-------NNVTSRINA---HTAEVCGLKWSNEGNLLASGGDDN-------------LVHVWDHSKMS- 206 (364)
Q Consensus 152 -g~i~~~d~~~~-------~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~-------------~i~iwd~~~~~- 206 (364)
..|.-|..... +.++..... ....-..|.|.|+|.+.++.+..+ .|.-.+....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 23444444333 111222222 234456799999997666655432 23333322100
Q ss_pred ----------CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC-----------------------
Q 040533 207 ----------SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG----------------------- 253 (364)
Q Consensus 207 ----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----------------------- 253 (364)
....+. -.++. ....++|+|....++++-.| .++.=.|--+..+
T Consensus 161 ~dnP~~~~~~~~~~i~-A~GlR-N~~~~~~d~~tg~l~~~d~G-~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIY-AYGLR-NPFGLAFDPNTGRLWAADNG-PDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TTSTTTTSTTSTTTEE-EE--S-EEEEEEEETTTTEEEEEEE--SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCccccCCCceEEEE-EeCCC-ccccEEEECCCCcEEEEccC-CCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 000010 11222 23578999983355554322 2322222222211
Q ss_pred ------eEEEEEecCCCeEEEEEcCC-------ccceeeeccCCccCCCCeEEEeeCCCCceeee----ccccccceeEE
Q 040533 254 ------TCIHSVDTKAQICGLEWNRH-------HKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE----LQHQTSRILEL 316 (364)
Q Consensus 254 ------~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~----~~~~~~~i~~i 316 (364)
.+...+..+..+..+.|... |.++++... .+.|....+.....+.. +......+..+
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v 311 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYG------GGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDV 311 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETT------TTEEEEEEEETTEEEEEEEEECTTSSS-EEEE
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEecCC------CCEEEEEeeecCCCccceEEccccCCCCceEE
Confidence 12223334445666666543 334444332 56777777654433221 22344478999
Q ss_pred eecCCCCEEEEEeCCCcEE
Q 040533 317 SQSPDGLTVVSAAADETLR 335 (364)
Q Consensus 317 ~~~~~~~~l~~~~~dg~i~ 335 (364)
++.|||.+.++.+.+|.|+
T Consensus 312 ~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEETTSEEEEEE-TTTTEE
T ss_pred EEcCCCeEEEEECCCCeEe
Confidence 9999999888888888874
No 371
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.88 E-value=0.0031 Score=43.09 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=67.8
Q ss_pred ceEEEEcC---CC-CEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 90 PTSISWSQ---DA-KTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 90 v~~~~~s~---~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
|+++++.. || +.|++|+.|..|++|+- .+.+..+.. ...|.+++-.. ...++.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~Rl-- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLG--GGRFAYALANGTVGVYDRSQRL-- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcC--CCEEEEEecCCEEEEEeCccee--
Confidence 56666654 33 58999999999999974 466677764 45677777664 5789999999999999853221
Q ss_pred eeeeecccCcEEEEEEcC-C--C-CEEEEEeCCCeEE
Q 040533 166 TSRINAHTAEVCGLKWSN-E--G-NLLASGGDDNLVH 198 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~-~--~-~~l~~~~~d~~i~ 198 (364)
.+ .+ .+..+.++++.. + | ..|++|-.+|.|-
T Consensus 75 WR-iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WR-IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ee-ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22 22 223366665544 3 2 3688888888764
No 372
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.88 E-value=0.0092 Score=51.79 Aligned_cols=82 Identities=9% Similarity=-0.048 Sum_probs=56.5
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccc-eeEEeecC---C--------------CCE
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSR-ILELSQSP---D--------------GLT 324 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~---~--------------~~~ 324 (364)
..+.+++.+|.+++.++... -|.|.++|+.++..++.+++-.+. +.-+.... . ..+
T Consensus 308 R~~~~i~~sP~~~laA~tDs------lGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDS------LGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred ceEEEEEECCCCCEEEEEcC------CCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 45788999999998888744 799999999999888877764321 11111100 0 112
Q ss_pred -EEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 325 -VVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 325 -l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
++-+-.-|.|.||.+..+..+..+..
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 33456689999999999988777653
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.85 E-value=0.0046 Score=56.73 Aligned_cols=200 Identities=12% Similarity=0.062 Sum_probs=104.8
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe------cCC--cEEEEecCCcceeeeeecCC
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY------MAS--KLQLWDAETSKLIRNLEGHD 129 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg--~i~iw~~~~~~~~~~~~~~~ 129 (364)
+.+.. +|.+.-.+- +....+-...+....+.+.+++|+|+.+|... .|. .|.+++. .+.. ..+.. .
T Consensus 323 ~~~v~-~G~l~~~~~--~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g 396 (591)
T PRK13616 323 LHALV-DGSLVSVDG--QGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-G 396 (591)
T ss_pred ceEEE-CCeEEEecC--CCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-C
Confidence 44444 676655442 22222222223334678999999999887765 243 4555554 2222 33322 2
Q ss_pred CcEEEEEeecCCCCEEEEeeCC------------CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeE
Q 040533 130 KRVATASWNHWNGHILTSGSQD------------KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLV 197 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~d------------g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 197 (364)
...+.-.|+| ++..+++.... +.+.+.+++.+.. .. .....|..+.|||||..++... ++.|
T Consensus 397 ~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~RiA~i~-~g~v 470 (591)
T PRK13616 397 HSLTRPSWSL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRAAMII-GGKV 470 (591)
T ss_pred CCCCCceECC-CCCceEEEecCcceEEEeccCCCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEEEEEE-CCEE
Confidence 2478889999 87766665432 2333334432221 11 3356799999999999888766 5777
Q ss_pred EEEeCCCCCCCc-ce---EEecc-cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec---CCCeEEEE
Q 040533 198 HVWDHSKMSSSK-CL---HRFRD-HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT---KAQICGLE 269 (364)
Q Consensus 198 ~iwd~~~~~~~~-~~---~~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~ 269 (364)
++=-+.....+. .+ ..+.. -...+.++.|.+++. +++... ..+..+...++... ....+.. ..++..++
T Consensus 471 ~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~-~~~~~v~~v~vDG~-~~~~~~~~n~~~~v~~va 547 (591)
T PRK13616 471 YLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-LVVGRS-DPEHPVWYVNLDGS-NSDALPSRNLSAPVVAVA 547 (591)
T ss_pred EEEEEEeCCCCceeecccEEeecccCCccccceEecCCE-EEEEec-CCCCceEEEecCCc-cccccCCCCccCceEEEe
Confidence 773222211111 11 11222 233468899999885 443322 13344544455422 2222122 34566666
Q ss_pred EcC
Q 040533 270 WNR 272 (364)
Q Consensus 270 ~~~ 272 (364)
-++
T Consensus 548 a~~ 550 (591)
T PRK13616 548 ASP 550 (591)
T ss_pred cCC
Confidence 665
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0005 Score=59.38 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=99.7
Q ss_pred CCCEE-EEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCC-------EEEEeeCCCcEEEEEcccCcc-eeee
Q 040533 98 DAKTL-AVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGH-------ILTSGSQDKSIINHDVRVSNN-VTSR 168 (364)
Q Consensus 98 ~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~l~~~~~dg~i~~~d~~~~~~-~~~~ 168 (364)
+.++| ..+.....++-.|++.|+.+.....+.. |.-+.+.| +.. .-+.|-.+..|.-||++-... .+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 34444 4455556788899999999998887665 77777776 332 234566788899999986553 2222
Q ss_pred eeccc----CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 169 INAHT----AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 169 ~~~~~----~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
.++|. ....|.+-..+| ++++|+.+|.|++||--.. +.-..+.+-..+|..+..+.+|+++++|+ +..
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~---~AKTAlPgLG~~I~hVdvtadGKwil~Tc----~ty 493 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGR---RAKTALPGLGDAIKHVDVTADGKWILATC----KTY 493 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhh---hhhhcccccCCceeeEEeeccCcEEEEec----ccE
Confidence 23332 234566555565 8999999999999995221 22334566788999999999999999885 678
Q ss_pred EEEEECC
Q 040533 245 IKIWNVQ 251 (364)
Q Consensus 245 i~i~d~~ 251 (364)
+.+.++.
T Consensus 494 LlLi~t~ 500 (644)
T KOG2395|consen 494 LLLIDTL 500 (644)
T ss_pred EEEEEEe
Confidence 8888764
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.79 E-value=0.01 Score=54.57 Aligned_cols=185 Identities=10% Similarity=0.123 Sum_probs=103.2
Q ss_pred CcEEEEEeecCCCCEEEEee------CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC---------
Q 040533 130 KRVATASWNHWNGHILTSGS------QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD--------- 194 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 194 (364)
..+...+.+| +++.++... .|+.-.+|-...+........+ .....-.|+|+|..+++....
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678889999 887776654 2443344433223322222222 237788999998877777533
Q ss_pred ---CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEE---EECCCCeE-E---EEEec--C
Q 040533 195 ---NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI---WNVQKGTC-I---HSVDT--K 262 (364)
Q Consensus 195 ---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i---~d~~~~~~-~---~~~~~--~ 262 (364)
+.+.+.+++.... .. .....|..+.|+|||..+++.. ++.|.+ -....|.. + ..+.. .
T Consensus 427 ~~~gql~~~~vd~ge~---~~---~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~ 496 (591)
T PRK13616 427 PATGQLARTPVDASAV---AS---RVPGPISELQLSRDGVRAAMII----GGKVYLAVVEQTEDGQYALTNPREVGPGLG 496 (591)
T ss_pred CCCceEEEEeccCchh---hh---ccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEEeCCCCceeecccEEeecccC
Confidence 2222223322111 11 2245799999999998888775 467777 55445541 1 11211 2
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc--cccceeEEeecCCCCEEEEEeCCCcEE
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH--QTSRILELSQSPDGLTVVSAAADETLR 335 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~ 335 (364)
..+..+.|.+++.+++.. . +.+..+...++..... ..+.. ...++..++-+++ .++....+|.+.
T Consensus 497 ~~~~~l~W~~~~~L~V~~-~----~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 497 DTAVSLDWRTGDSLVVGR-S----DPEHPVWYVNLDGSNS-DALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred CccccceEecCCEEEEEe-c----CCCCceEEEecCCccc-cccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 336889999999965432 2 2244455555543222 22222 2456777777763 466666666433
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.75 E-value=0.014 Score=46.81 Aligned_cols=212 Identities=11% Similarity=0.122 Sum_probs=125.7
Q ss_pred cEEEEEeecCCCCEEEEeeCCCc-EEEEEcccCcceeeeeecccCc--EEEEEEcCCCCEEEEEeCC-----CeEEEEeC
Q 040533 131 RVATASWNHWNGHILTSGSQDKS-IINHDVRVSNNVTSRINAHTAE--VCGLKWSNEGNLLASGGDD-----NLVHVWDH 202 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d-----~~i~iwd~ 202 (364)
.-..++|+|....-++.+-.-|+ ..++|....+.+.... ..++. --.-.|||||.+|+..-.| |.|-+||.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-cccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence 34557788866666776666665 4578887666433322 11111 1123589999988876443 78999998
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecC---------------CCCCeEEEEECCCCeEEEEEecC-----
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG---------------TQDGCIKIWNVQKGTCIHSVDTK----- 262 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g---------------~~d~~i~i~d~~~~~~~~~~~~~----- 262 (364)
+.. .+.+-.+..|.-....+.|.+||+.+++..+| +..-++.+.|..+|+.+.+....
T Consensus 148 r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 148 REG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred ccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 853 34466667777777889999999766665431 12334566666677666554332
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc-------cccceeEEeecCCCCEEEEEeCC-CcE
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH-------QTSRILELSQSPDGLTVVSAAAD-ETL 334 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-------~~~~i~~i~~~~~~~~l~~~~~d-g~i 334 (364)
..+..++..++|..++... |.-..+|---.+=-...++++.-+.. ....|-+|+.+.+..+++..+-. +..
T Consensus 226 lSiRHld~g~dgtvwfgcQ-y~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQ-YRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred cceeeeeeCCCCcEEEEEE-eeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 4577888888887665432 21111111111112223343333321 23457788887766666655544 557
Q ss_pred EEEEeeCCCCCc
Q 040533 335 RFWEAFGPSGSG 346 (364)
Q Consensus 335 ~vw~~~~~~~~~ 346 (364)
.+||..++..+.
T Consensus 305 vi~da~tG~vv~ 316 (366)
T COG3490 305 VIWDAATGAVVS 316 (366)
T ss_pred EEEEcCCCcEEe
Confidence 889999987643
No 377
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.75 E-value=0.0076 Score=55.28 Aligned_cols=222 Identities=13% Similarity=0.171 Sum_probs=116.2
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC-C-----cEEEEecCCcceee--eeecCCCcEEEEE
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA-S-----KLQLWDAETSKLIR--NLEGHDKRVATAS 136 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g-----~i~iw~~~~~~~~~--~~~~~~~~v~~~~ 136 (364)
..+..||..+++......+.... .-.+++.. ++...++|+.| | ++..||..+++... .+...........
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r-~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPR-CRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCccc-ccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 47889999998777666664333 33445544 45778888888 3 57888887776433 2222222222233
Q ss_pred eecCCCCEEEEeeCCCc-----EEEEEcccCcceeeeeecccCcEEEEEEc-CCCCEEEEEeCCC------eEEEEeCCC
Q 040533 137 WNHWNGHILTSGSQDKS-----IINHDVRVSNNVTSRINAHTAEVCGLKWS-NEGNLLASGGDDN------LVHVWDHSK 204 (364)
Q Consensus 137 ~~~~~~~~l~~~~~dg~-----i~~~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~------~i~iwd~~~ 204 (364)
. ++.+.++|+.||. +-.||..+.+- .............+.. -+|.+.++|+.++ .+..||..+
T Consensus 379 l---~g~iYavGG~dg~~~l~svE~YDp~~~~W--~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 379 L---DGKLYAVGGFDGEKSLNSVECYDPVTNKW--TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred E---CCEEEEEeccccccccccEEEecCCCCcc--cccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 3 8999999999974 77788776652 1111111122222222 2677888887554 467788665
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC-----eEEEEECCCCeEEEEEecCCCeEEEEEcCCccceee
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG-----CIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS 279 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~-----~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 279 (364)
... ..+..+........ ++.- +..+++.|| .|+ +|..||..+.+-...-....+.........+..+++
T Consensus 454 ~~W-~~~~~M~~~R~~~g-~a~~--~~~iYvvGG--~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~ 527 (571)
T KOG4441|consen 454 NTW-TLIAPMNTRRSGFG-VAVL--NGKIYVVGG--FDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYA 527 (571)
T ss_pred Cce-eecCCcccccccce-EEEE--CCEEEEECC--ccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEE
Confidence 432 22222221122222 2222 236888876 554 377788877654433222222222222222222222
Q ss_pred eccCCccCCCCeEEEeeCCC
Q 040533 280 GHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~ 299 (364)
..++.....-++|..||..+
T Consensus 528 vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 528 VGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred EecccCccccceeEEcCCCC
Confidence 22233333445566666544
No 378
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.73 E-value=0.034 Score=50.71 Aligned_cols=245 Identities=13% Similarity=0.135 Sum_probs=131.5
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC--CCCEEEEEec------CCcEEEEecCCcceeeeeec
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ--DAKTLAVGYM------ASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~ 127 (364)
+.++.++.++.|.-+|.++|+..-......+... ..+.-+| .+..++++.. +|.|.-+|.++|+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4567777889999999999987544433222110 1111122 1234555542 68899999999988765432
Q ss_pred CCC-------------------------------cEE-EEEeecCCCCEEEEeeCC-----C-----------cEEEEEc
Q 040533 128 HDK-------------------------------RVA-TASWNHWNGHILTSGSQD-----K-----------SIINHDV 159 (364)
Q Consensus 128 ~~~-------------------------------~v~-~~~~~~~~~~~l~~~~~d-----g-----------~i~~~d~ 159 (364)
-.. .+. .+++.| ...++..+..+ + .|.-.|+
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 111 111 235555 45555554421 2 5666777
Q ss_pred ccCcceeeeeec--cc-------CcEEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCCCCcc---e--EEe----cccc
Q 040533 160 RVSNNVTSRINA--HT-------AEVCGLKWSNEGN---LLASGGDDNLVHVWDHSKMSSSKC---L--HRF----RDHR 218 (364)
Q Consensus 160 ~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~---~--~~~----~~~~ 218 (364)
++++..- .++. |. ....-+....+|+ .++.+..+|.+++.|-++++.... . ... ....
T Consensus 279 ~TG~~~W-~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 279 DTGKIKW-HYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred ccCCEEE-eeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 7776422 2222 21 1112223334665 788899999999999876543100 0 000 0000
Q ss_pred ---------------------------cc--eeEEEEccCCCcEEEeecC------------------------------
Q 040533 219 ---------------------------AA--VKALAWCPYQFNVLASGGG------------------------------ 239 (364)
Q Consensus 219 ---------------------------~~--v~~~~~~~~~~~~~~~~~g------------------------------ 239 (364)
+. -..++++|+...+++-...
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~ 437 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD 437 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence 00 0124566654333322110
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 240 TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
..-|.|.-+|+.+++..-..+...+...-...-.+..++.+ ..+|.++.+|.++++.+.+.+-.
T Consensus 438 ~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g------~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 438 DHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYG------TLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEE------CCCCeEEEEECCCCCEeEEEeCC
Confidence 01356888888888888776544332111111233344444 34999999999999999887654
No 379
>PHA02713 hypothetical protein; Provisional
Probab=97.73 E-value=0.0069 Score=55.63 Aligned_cols=231 Identities=8% Similarity=0.055 Sum_probs=112.0
Q ss_pred cEEEEecCCcceee--eeecCCCcEEEEEeecCCCCEEEEeeCC------CcEEEEEcccCcce-eeeeecccCcEEEEE
Q 040533 110 KLQLWDAETSKLIR--NLEGHDKRVATASWNHWNGHILTSGSQD------KSIINHDVRVSNNV-TSRINAHTAEVCGLK 180 (364)
Q Consensus 110 ~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~-~~~~~~~~~~v~~~~ 180 (364)
.+..||..+++... .+...... .+++. - ++.+++.|+.+ ..+..||+.+..-. ...+....... +++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE
Confidence 46778887765332 22211111 12222 2 77788888754 24778887765421 11111111111 222
Q ss_pred EcCCCCEEEEEeCCC-----eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC-------------
Q 040533 181 WSNEGNLLASGGDDN-----LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD------------- 242 (364)
Q Consensus 181 ~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d------------- 242 (364)
.-++++.+.||.++ .+..||..+... ..+..+.........+.. ++ .+.+.|| .+
T Consensus 349 -~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W-~~~~~mp~~r~~~~~~~~--~g-~IYviGG--~~~~~~~~~~~~~~~ 421 (557)
T PHA02713 349 -VIDDTIYAIGGQNGTNVERTIECYTMGDDKW-KMLPDMPIALSSYGMCVL--DQ-YIYIIGG--RTEHIDYTSVHHMNS 421 (557)
T ss_pred -EECCEEEEECCcCCCCCCceEEEEECCCCeE-EECCCCCcccccccEEEE--CC-EEEEEeC--CCccccccccccccc
Confidence 22577778887654 478899765422 212222111111112222 23 6777775 32
Q ss_pred ----------CeEEEEECCCCeEEEE--EecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC---Cceeeecc
Q 040533 243 ----------GCIKIWNVQKGTCIHS--VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH---MTKWGELQ 307 (364)
Q Consensus 243 ----------~~i~i~d~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~---~~~~~~~~ 307 (364)
..+..||..+.+-... +.....-.+++. -+++..+.|+.-........+..||..+ ...+..+.
T Consensus 422 ~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 422 IDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE 500 (557)
T ss_pred ccccccccccceEEEECCCCCeEeecCCCCcccccCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence 3577788776543322 111111112222 2344444442100000123577899876 33344444
Q ss_pred ccccceeEEeecCCCCEEEEEeCCC--cEEEEEeeCCCCCcceeccCCc
Q 040533 308 HQTSRILELSQSPDGLTVVSAAADE--TLRFWEAFGPSGSGDFVSHLDG 354 (364)
Q Consensus 308 ~~~~~i~~i~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~ 354 (364)
........+.+ +|++.++|+.|| .+..||..+.+-......|.+.
T Consensus 501 ~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~~ 547 (557)
T PHA02713 501 SRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSNS 547 (557)
T ss_pred cccccceeEEE--CCEEEEEeeecceeehhhcCcccccccchhhhcCCc
Confidence 33333333343 788889999888 7888888877665555555543
No 380
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.71 E-value=0.00013 Score=39.48 Aligned_cols=38 Identities=32% Similarity=0.563 Sum_probs=33.1
Q ss_pred ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
+....+..|...|.++.|++ ++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 45566677889999999999 789999999999999996
No 381
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.67 E-value=0.024 Score=47.21 Aligned_cols=156 Identities=13% Similarity=0.169 Sum_probs=79.0
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc-ccCc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV-RVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~-~~~~ 163 (364)
.-...+..+.-++||++++++.......-||.-...-...-+.-..+|..|.|.| ++.+.+.+ +.|.|+.=+. ....
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCcc
Confidence 4467788999999999999886544455676432222222223467899999999 77766644 8888888772 1111
Q ss_pred ceee---eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 164 NVTS---RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 164 ~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
.... ......-.+..++|.+++...++|+. |.+. .....++..+.......-...++.+.|.+.. .-++.|
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~lG--- 293 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFVLG--- 293 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETT-EEEEE----
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCCccceECccccCCCCceEEEEEcCCC-ceEEEC---
Confidence 1111 11112234789999998877776664 4433 3333444333222222334567888887654 455555
Q ss_pred CCCeEEEE
Q 040533 241 QDGCIKIW 248 (364)
Q Consensus 241 ~d~~i~i~ 248 (364)
.+|.|.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 58877654
No 382
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.67 E-value=0.053 Score=51.06 Aligned_cols=294 Identities=11% Similarity=0.155 Sum_probs=153.5
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCC------CEEEEEecCCcEEEEe-cCCcceeeee--e--
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDA------KTLAVGYMASKLQLWD-AETSKLIRNL--E-- 126 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~~~~~dg~i~iw~-~~~~~~~~~~--~-- 126 (364)
++.++.++.+...++..+......+ ..-+..|.|+.++|-| +++++|..+..+.+.- ..+...+... .
T Consensus 502 VvvA~~~~~l~y~~i~~~~l~e~~~-~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~ 580 (1096)
T KOG1897|consen 502 VVVAGGGLALFYLEIEDGGLREVSH-KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE 580 (1096)
T ss_pred EEEecCccEEEEEEeeccceeeeee-heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC
Confidence 4444455666666666555322221 2336789999999842 3788888776655443 3333322221 1
Q ss_pred cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee---cccCcEEEEEEcC-------------------C
Q 040533 127 GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN---AHTAEVCGLKWSN-------------------E 184 (364)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~-------------------~ 184 (364)
.-...|.-..+-. +..+|.++..||.+..|.+..........+ --..|+.--.|+. +
T Consensus 581 ~iPRSIl~~~~e~-d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 581 IIPRSILLTTFEG-DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred ccchheeeEEeec-cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC
Confidence 1223444445544 578999999999988776543321110000 0011111111111 1
Q ss_pred CC------------------------EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 185 GN------------------------LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 185 ~~------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
++ .++++. .+.+++..+...+.. .+++.. -......+++.+.. .++.+.+..
T Consensus 660 ~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl-~irtvp-l~~~prrI~~q~~s-l~~~v~s~r 735 (1096)
T KOG1897|consen 660 GKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKL-HIRTVP-LGESPRRICYQESS-LTFGVLSNR 735 (1096)
T ss_pred CcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhc-ceeeec-CCCChhheEecccc-eEEEEEecc
Confidence 11 222222 233444444332221 122222 23345566776633 333322100
Q ss_pred ---------CC---CeEEEEECCCCeEEEEEecC-----CCeEEEEEcCC-ccceeeeccCCcc----CCCCeEEEeeCC
Q 040533 241 ---------QD---GCIKIWNVQKGTCIHSVDTK-----AQICGLEWNRH-HKEILSGHGFSSS----GDGQKLCLWKYP 298 (364)
Q Consensus 241 ---------~d---~~i~i~d~~~~~~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~~~~~~----~~~~~i~i~d~~ 298 (364)
.. ..++++|-.+.+.+...+.. ..+.+..|..+ +.++++|+++..- -..|.|.+|.+.
T Consensus 736 ~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~ 815 (1096)
T KOG1897|consen 736 IESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFE 815 (1096)
T ss_pred cccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEe
Confidence 11 24677777776666554432 23555567777 8888888765432 335889999887
Q ss_pred CCceeeecccc--ccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeee
Q 040533 299 HMTKWGELQHQ--TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKV 360 (364)
Q Consensus 299 ~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~ 360 (364)
.++.+.....+ .+.+.++.. -+|++||.- ...|++|+..+.+.++.-..+..++..+..
T Consensus 816 e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l 876 (1096)
T KOG1897|consen 816 ELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDL 876 (1096)
T ss_pred cCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEE
Confidence 75544443322 234444432 267777644 568999999998777766666666665543
No 383
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.60 E-value=0.027 Score=45.99 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=91.0
Q ss_pred CceEEEEcCCCCEEEEEe-cCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE-cccCccee
Q 040533 89 FPTSISWSQDAKTLAVGY-MASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD-VRVSNNVT 166 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d-~~~~~~~~ 166 (364)
.+.+.+++++++.+|... .++.-.+|-...+....... ....+....|++ ++...+....+...+++. ...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCccee
Confidence 688999999999887765 23333333333333333332 233788889999 777777766666666664 22232211
Q ss_pred eeeec--ccCcEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCCCC------cceEEecccccceeEEEEccCCCcEEE
Q 040533 167 SRINA--HTAEVCGLKWSNEGNLLASGG---DDNLVHVWDHSKMSSS------KCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 167 ~~~~~--~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
..... ....|..+.+||||..++... .++.|.+--+...... ............+..+.|.+++..+++
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 11211 112899999999999877766 3577777655433332 112222223467899999998854444
Q ss_pred eecCCCCCeEEE
Q 040533 236 SGGGTQDGCIKI 247 (364)
Q Consensus 236 ~~~g~~d~~i~i 247 (364)
... .++.+..
T Consensus 183 ~~~--~~~~~~~ 192 (253)
T PF10647_consen 183 GRS--AGGPVVR 192 (253)
T ss_pred eCC--CCCceeE
Confidence 332 4443433
No 384
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.57 E-value=0.04 Score=47.00 Aligned_cols=232 Identities=13% Similarity=0.139 Sum_probs=112.0
Q ss_pred eEEEEcCCCCEEEEEec-CC--cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee
Q 040533 91 TSISWSQDAKTLAVGYM-AS--KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167 (364)
Q Consensus 91 ~~~~~s~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 167 (364)
+.=+|.+||+.|+.++. +| .+.+.|+++++..+...+.........++| +.+.++-...+..|+-.|+++.+. ..
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~-~~ 116 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEE-RV 116 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--E-EE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcE-EE
Confidence 34467889987766654 44 577888888876655443222233456677 666665555556888889988764 34
Q ss_pred eeecccCcEEEEEEc--CCCCEEEEEeC----------------------CCeEEEEeCCCCCCCcceEEecccccceeE
Q 040533 168 RINAHTAEVCGLKWS--NEGNLLASGGD----------------------DNLVHVWDHSKMSSSKCLHRFRDHRAAVKA 223 (364)
Q Consensus 168 ~~~~~~~~v~~~~~~--~~~~~l~~~~~----------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 223 (364)
.+......+-...|. .++..++-.-. ...|.--|+.+++ ...+......+..
T Consensus 117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~----~~~v~~~~~wlgH 192 (386)
T PF14583_consen 117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE----RKVVFEDTDWLGH 192 (386)
T ss_dssp EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT------EEEEEEESS-EEE
T ss_pred EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc----eeEEEecCccccC
Confidence 444445544445553 35554432211 1234445555433 2333334667788
Q ss_pred EEEccCCCcEEEeec-CCCCCe-EEEEECCC-CeEEEEEecC---CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 224 LAWCPYQFNVLASGG-GTQDGC-IKIWNVQK-GTCIHSVDTK---AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 224 ~~~~~~~~~~~~~~~-g~~d~~-i~i~d~~~-~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
+.|+|..+.+++-+- |..+.. -+||-+++ +...+.+..+ ..+.-=-|.|+|..+.--. +..++.+..|.-+|+
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~-~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDS-YTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEE-EETTT--EEEEEE-T
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEe-ecCCCCceEEEeeCC
Confidence 999998888877653 112221 24554432 3333333222 2355557899998876532 223455677888999
Q ss_pred CCCceeeeccccccceeEEeecCCCCEEEEEeCC
Q 040533 298 PHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 331 (364)
.+++.....+. .....+.-++||++++-=+.|
T Consensus 272 ~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeC--CceeeeEEcCCCCEEEecCCC
Confidence 88765433221 234466667899877654443
No 385
>PHA02713 hypothetical protein; Provisional
Probab=97.54 E-value=0.0083 Score=55.12 Aligned_cols=176 Identities=10% Similarity=0.077 Sum_probs=90.8
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC-----cEEEEecCCcceee--eeecCCCcEEEEEee
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS-----KLQLWDAETSKLIR--NLEGHDKRVATASWN 138 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~ 138 (364)
.+..||..++.......+.........+ .-+++..+.|+.++ .+..||..+.+... .+.........+..
T Consensus 321 ~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~- 397 (557)
T PHA02713 321 KVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL- 397 (557)
T ss_pred eEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE-
Confidence 5778888777654443332222222222 22677778887654 48889987664332 22211112222333
Q ss_pred cCCCCEEEEeeCCC-----------------------cEEEEEcccCcceeeeeec-ccCcE-EEEEEcCCCCEEEEEeC
Q 040533 139 HWNGHILTSGSQDK-----------------------SIINHDVRVSNNVTSRINA-HTAEV-CGLKWSNEGNLLASGGD 193 (364)
Q Consensus 139 ~~~~~~l~~~~~dg-----------------------~i~~~d~~~~~~~~~~~~~-~~~~v-~~~~~~~~~~~l~~~~~ 193 (364)
++.+.+.|+.++ .+..||..+..- ..... ..... .+++ .-++++.+.|+.
T Consensus 398 --~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W--~~v~~m~~~r~~~~~~-~~~~~IYv~GG~ 472 (557)
T PHA02713 398 --DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW--ETLPNFWTGTIRPGVV-SHKDDIYVVCDI 472 (557)
T ss_pred --CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE--eecCCCCcccccCcEE-EECCEEEEEeCC
Confidence 788888887653 467788776542 11111 11111 1122 224666677765
Q ss_pred C------CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC--eEEEEECCCCe
Q 040533 194 D------NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG--CIKIWNVQKGT 254 (364)
Q Consensus 194 d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~ 254 (364)
+ ..+..||..+......+..+.........+.+ +..+.++|| .++ .+..||..+.+
T Consensus 473 ~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg--~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 473 KDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHC--YESYMLQDTFNVYTYE 536 (557)
T ss_pred CCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEee--ecceeehhhcCccccc
Confidence 4 24678887752123333333333333333333 337888886 666 67777776654
No 386
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.53 E-value=0.022 Score=52.31 Aligned_cols=235 Identities=14% Similarity=0.146 Sum_probs=119.4
Q ss_pred cCCCCEEEEEecCC------cEEEEecCCcceee--eeecCCCcEEEEEeecCCCCEEEEeeCC-C-----cEEEEEccc
Q 040533 96 SQDAKTLAVGYMAS------KLQLWDAETSKLIR--NLEGHDKRVATASWNHWNGHILTSGSQD-K-----SIINHDVRV 161 (364)
Q Consensus 96 s~~~~~l~~~~~dg------~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g-----~i~~~d~~~ 161 (364)
+..+.+++.|+.++ .+..||..+++... .+. ....-.+++.. ++.+.++|+.| | .+..||...
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCC
Confidence 33456777777663 58888888774433 222 22223344444 67889999988 3 577888876
Q ss_pred CcceeeeeecccCcEEEEEE-cCCCCEEEEEeCCCe-----EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 162 SNNVTSRINAHTAEVCGLKW-SNEGNLLASGGDDNL-----VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
.+- .....-..+-..... .-+|.+.++|+.||. +-.||..+.+. ..+..+.. .........-+..+.+
T Consensus 359 ~~W--~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W-~~va~m~~---~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 359 NQW--TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKW-TPVAPMLT---RRSGHGVAVLGGKLYI 432 (571)
T ss_pred Cce--eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcc-cccCCCCc---ceeeeEEEEECCEEEE
Confidence 652 111111111111111 126788899998864 66788665432 22222211 2222222233347777
Q ss_pred eecCCC-C---CeEEEEECCCCeEEEE--EecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce--eeecc
Q 040533 236 SGGGTQ-D---GCIKIWNVQKGTCIHS--VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK--WGELQ 307 (364)
Q Consensus 236 ~~~g~~-d---~~i~i~d~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~--~~~~~ 307 (364)
+||.+. . .++..||..+++-... +.....-..++.-. +...+.|+ +........+..||..+.+- +..+.
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~-~~iYvvGG-~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLN-GKIYVVGG-FDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEEC-CEEEEECC-ccCCCccceEEEEcCCCCceeEcccCc
Confidence 776111 1 4578888887654332 22222222233333 33333332 11112234478888766443 22233
Q ss_pred ccccceeEEeecCCCCEEEEEeCCCc-----EEEEEeeCCC
Q 040533 308 HQTSRILELSQSPDGLTVVSAAADET-----LRFWEAFGPS 343 (364)
Q Consensus 308 ~~~~~i~~i~~~~~~~~l~~~~~dg~-----i~vw~~~~~~ 343 (364)
.....+....+ ++...++|+.||. |..||..+.+
T Consensus 511 ~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 511 SPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 23333322333 6677788887764 6777665543
No 387
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.51 E-value=0.028 Score=43.84 Aligned_cols=205 Identities=13% Similarity=0.116 Sum_probs=116.4
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCC---CEEEEeeCCCcEEEEEcccCcc-eeeee-----e
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG---HILTSGSQDKSIINHDVRVSNN-VTSRI-----N 170 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~~~d~~~~~~-~~~~~-----~ 170 (364)
.++.+--..|.|+-||..+.+..+. .....++..+.+-- .+ .+.+.++..-.|.-||...... +...+ .
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra-~ie~p~~ag~ilpv-~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRA-KIEGPPSAGFILPV-EGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEE-EEecCcceeEEEEe-cCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 3444444667777788877554332 21222244444422 22 2333333333344466322211 11110 0
Q ss_pred cccCcEEEEEEcCCCCEEEEEe-C---------CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 171 AHTAEVCGLKWSNEGNLLASGG-D---------DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 171 ~~~~~v~~~~~~~~~~~l~~~~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
..+.+.+.-..+|+|++++ |. . .|.++.|-... .+..+...-.--+.++|+.+.+.+..+-+
T Consensus 106 ~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h-----~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs-- 177 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGH-----QVELIWNCVGISNGLAWDSDAKKFYYIDS-- 177 (310)
T ss_pred HHhcccccCccCCCCceee-eeeccccccccccccEEEEeccCC-----CceeeehhccCCccccccccCcEEEEEcc--
Confidence 1134556667789998743 32 1 24455554221 12222222334467899988877777755
Q ss_pred CCCeEEEEE--CCCCe-----EEEEEecC-----CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc
Q 040533 241 QDGCIKIWN--VQKGT-----CIHSVDTK-----AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 241 ~d~~i~i~d--~~~~~-----~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
.+-.|.-|| ..+|. .+..++.. ...-.+++..+|.+.++... .++|...|..+++.+.++.-
T Consensus 178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n------g~~V~~~dp~tGK~L~eikl 251 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN------GGTVQKVDPTTGKILLEIKL 251 (310)
T ss_pred CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec------CcEEEEECCCCCcEEEEEEc
Confidence 788887787 55543 23333221 12345666778887777754 89999999999999999998
Q ss_pred cccceeEEeecC
Q 040533 309 QTSRILELSQSP 320 (364)
Q Consensus 309 ~~~~i~~i~~~~ 320 (364)
....|++++|--
T Consensus 252 Pt~qitsccFgG 263 (310)
T KOG4499|consen 252 PTPQITSCCFGG 263 (310)
T ss_pred CCCceEEEEecC
Confidence 899999999953
No 388
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.48 E-value=0.098 Score=49.43 Aligned_cols=286 Identities=11% Similarity=0.129 Sum_probs=153.0
Q ss_pred CCCcceeecccCCCccEEEEEeCCeEEEE--ECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc
Q 040533 42 LRNDYYSNMMDWGRNNILAIALGLELYLW--KQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS 119 (364)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 119 (364)
++..+....+.-+...++++..||.+.-| |..++.........-...++.--.|+..++.-+.+..|.-..+|.. ++
T Consensus 582 iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~ 660 (1096)
T KOG1897|consen 582 IPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-NG 660 (1096)
T ss_pred cchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-CC
Confidence 33444344444333446777788877655 4555554333321122445555566665544444445666666753 34
Q ss_pred ceeeeeecCCCcEEE-EEeec-CCCCEEEEeeCCCcEEEEEcccCcce-eeeeecccCcEEEEEEcCCCCEEEEEeC---
Q 040533 120 KLIRNLEGHDKRVAT-ASWNH-WNGHILTSGSQDKSIINHDVRVSNNV-TSRINAHTAEVCGLKWSNEGNLLASGGD--- 193 (364)
Q Consensus 120 ~~~~~~~~~~~~v~~-~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~--- 193 (364)
+.+..--.- ..+.. +.|+. .-.+.++++. .+.+++.-++.-+++ .++. .-......+++.+....+++.+.
T Consensus 661 kLv~spls~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtv-pl~~~prrI~~q~~sl~~~v~s~r~e 737 (1096)
T KOG1897|consen 661 KLVYSPLSL-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTV-PLGESPRRICYQESSLTFGVLSNRIE 737 (1096)
T ss_pred cEEEeccch-HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeee-cCCCChhheEecccceEEEEEecccc
Confidence 433221111 11111 22322 1234455544 345666655433322 2222 22334456666664434443331
Q ss_pred --------C---CeEEEEeCCCCCCCcceEE--eccc--ccceeEEEEccCCCcEEEeecC--------CCCCeEEEEEC
Q 040533 194 --------D---NLVHVWDHSKMSSSKCLHR--FRDH--RAAVKALAWCPYQFNVLASGGG--------TQDGCIKIWNV 250 (364)
Q Consensus 194 --------d---~~i~iwd~~~~~~~~~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~g--------~~d~~i~i~d~ 250 (364)
. ..++++|-++.+ .+.. +... ...+.++.|..+....++.|.+ ...|.|.++..
T Consensus 738 ~~~~~~~ee~~~s~l~vlD~nTf~---vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~ 814 (1096)
T KOG1897|consen 738 SSAEYYGEEYEVSFLRVLDQNTFE---VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEF 814 (1096)
T ss_pred cchhhcCCcceEEEEEEecCCcee---EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEE
Confidence 1 135566633321 1111 1111 1235556687775455555531 13578888887
Q ss_pred CCCeEE---EEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEE
Q 040533 251 QKGTCI---HSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVS 327 (364)
Q Consensus 251 ~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 327 (364)
..++.+ ......+.+.++..- +|+++++- +..|++|++.+.+.++.-..+..++..+...-.|..+++
T Consensus 815 ~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--------n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~V 885 (1096)
T KOG1897|consen 815 EELNSLELVAETVVKGAVYALVEF-NGKLLAGI--------NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAV 885 (1096)
T ss_pred ecCCceeeeeeeeeccceeehhhh-CCeEEEec--------CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEE
Confidence 763333 333344556555432 56666654 889999999999888777788888999999999999999
Q ss_pred EeCCCcEEEEEeeCCC
Q 040533 328 AAADETLRFWEAFGPS 343 (364)
Q Consensus 328 ~~~dg~i~vw~~~~~~ 343 (364)
|..-+.+.+-..+..+
T Consensus 886 gDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 886 GDLMRSITLLQYKGDE 901 (1096)
T ss_pred eeccceEEEEEEeccC
Confidence 9988888877666544
No 389
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.42 E-value=0.018 Score=39.44 Aligned_cols=102 Identities=10% Similarity=0.107 Sum_probs=67.2
Q ss_pred eeEEEE---ccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 221 VKALAW---CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 221 v~~~~~---~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
|+++++ ..+|..-|+.|+ .|..|++|+- .+.+..+.....+..+.-...+++.++- .+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs--~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l-------~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGS--DDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYAL-------ANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEec--CCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEe-------cCCEEEEEeC
Confidence 445554 445556666655 9999999974 5778888888999999988886654443 3999999985
Q ss_pred CCCceeeeccccccceeEEeecC-C--C-CEEEEEeCCCcEEE
Q 040533 298 PHMTKWGELQHQTSRILELSQSP-D--G-LTVVSAAADETLRF 336 (364)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~i~~~~-~--~-~~l~~~~~dg~i~v 336 (364)
. ..+...+.... +.++++.. + | .-|++|-.+|.|-+
T Consensus 71 ~--~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 S--QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred c--ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2 33333333223 55554433 3 2 36888888888743
No 390
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.39 E-value=0.032 Score=48.58 Aligned_cols=107 Identities=17% Similarity=0.132 Sum_probs=67.1
Q ss_pred EEEEcCCCCEEEEEecCCcEEE---EecC-Cc----ceeeeeec---CC--CcEEEEEeecC----------CCCEEEEe
Q 040533 92 SISWSQDAKTLAVGYMASKLQL---WDAE-TS----KLIRNLEG---HD--KRVATASWNHW----------NGHILTSG 148 (364)
Q Consensus 92 ~~~~s~~~~~l~~~~~dg~i~i---w~~~-~~----~~~~~~~~---~~--~~v~~~~~~~~----------~~~~l~~~ 148 (364)
.++.+|+++.||.|..+..+.+ |+.. .+ .......+ +. +.|+++.+-|- +...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5688999999999976665554 5331 11 11111111 22 57888877552 45789999
Q ss_pred eCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC---------CEEEEEeCCCeEEEEe
Q 040533 149 SQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG---------NLLASGGDDNLVHVWD 201 (364)
Q Consensus 149 ~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~d~~i~iwd 201 (364)
..+|.|++|... +. ++..-.-|..+|..+.+.... +.|..... +.|.+.|
T Consensus 86 ~ssG~vrfyte~-G~-LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Id 144 (415)
T PF14655_consen 86 TSSGYVRFYTEN-GV-LLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIID 144 (415)
T ss_pred ecccEEEEEecc-ch-HHHHHhcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEe
Confidence 999999999864 44 344444688899888875421 34444444 5566666
No 391
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.38 E-value=0.051 Score=43.79 Aligned_cols=206 Identities=13% Similarity=0.126 Sum_probs=117.1
Q ss_pred eecccCCCc--cEEEEEe--CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec-----CCcEEEEecCC
Q 040533 48 SNMMDWGRN--NILAIAL--GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM-----ASKLQLWDAET 118 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~~ 118 (364)
...+.++|. .-++.+. .....++|.++.+...+.........--.=.|||||.+|.+.-. .|.|-|||...
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 344666663 3344442 34678999988776544432211111223369999998877533 36799999875
Q ss_pred c-ceeeeeecCCCcEEEEEeecCCCCEEEEeeCC-------C-----------cEEEEEcccCcceee-eee--cccCcE
Q 040533 119 S-KLIRNLEGHDKRVATASWNHWNGHILTSGSQD-------K-----------SIINHDVRVSNNVTS-RIN--AHTAEV 176 (364)
Q Consensus 119 ~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g-----------~i~~~d~~~~~~~~~-~~~--~~~~~v 176 (364)
+ ..+..+..|.-.-..+.|.+ +++.++.+... | ++.+.|..+++.+.+ .+. .+.-.|
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred ccceecccccCCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 4 45667788888888999999 99988876421 1 122333222321111 111 233456
Q ss_pred EEEEEcCCCCEEEEEeCCCeE-----EEEeCCCCCCCcceEEec-------ccccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 177 CGLKWSNEGNLLASGGDDNLV-----HVWDHSKMSSSKCLHRFR-------DHRAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~d~~i-----~iwd~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
..++..+||...+-+-..|.- .+=-.+. ++++.-+. .....|-+++.+.+...+.+++- ..+.
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~---g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP--~GN~ 303 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRK---GEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP--RGNR 303 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccC---CCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC--CCCe
Confidence 677777777655544322210 0000001 11111111 12346778888877766777654 6778
Q ss_pred EEEEECCCCeEEEEE
Q 040533 245 IKIWNVQKGTCIHSV 259 (364)
Q Consensus 245 i~i~d~~~~~~~~~~ 259 (364)
..+||..+|..+..-
T Consensus 304 ~vi~da~tG~vv~~a 318 (366)
T COG3490 304 AVIWDAATGAVVSEA 318 (366)
T ss_pred EEEEEcCCCcEEecc
Confidence 899999999887653
No 392
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.33 E-value=0.00096 Score=37.96 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=30.0
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
...|.+++|+|..++||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 557999999999999999999999999998 4543
No 393
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.26 E-value=0.073 Score=43.18 Aligned_cols=176 Identities=16% Similarity=0.211 Sum_probs=114.4
Q ss_pred CCCCCCcEEeeCCCCCCCcceeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEE
Q 040533 27 DFDFQKEARILDAPNLRNDYYSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAV 104 (364)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 104 (364)
++.+..+..+...|......-+.++.|+|+. ++++.....-.|+=..+|+......+.+ -.....+.+..++++.++
T Consensus 67 ~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~ 145 (316)
T COG3204 67 RYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIV 145 (316)
T ss_pred hccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-cCChhHeEEecCCEEEEE
Confidence 4444555555555444434448999999963 6777777777777677888877777766 344578889888888888
Q ss_pred EecCCcEEEEecCCcceeee----------eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee--eeeecc
Q 040533 105 GYMASKLQLWDAETSKLIRN----------LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT--SRINAH 172 (364)
Q Consensus 105 ~~~dg~i~iw~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~ 172 (364)
--.++.+.++.+........ ....+.....++|.| ..+.|..+-+-.-+.+|.+....... .....+
T Consensus 146 dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~ 224 (316)
T COG3204 146 DERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDP 224 (316)
T ss_pred ehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCc
Confidence 77888898888765522211 111256788999999 66677777776777777665332111 111111
Q ss_pred -------cCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q 040533 173 -------TAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 173 -------~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 204 (364)
-..|.++.|++ .+.+|+-+.+++.+.-.|..-
T Consensus 225 ~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 225 TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 23467888887 456677777778777777653
No 394
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0013 Score=61.71 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=71.0
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEe
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASW 137 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 137 (364)
+++++..|.+...|..+. ..+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+.+-+
T Consensus 102 ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred EEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 344455577777776553 2222222234679999999999999999999999999999999999988877766555443
Q ss_pred ---ecCCCCEEEEeeCCCcEEEEEcc
Q 040533 138 ---NHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 138 ---~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
.. .+..++++...|. +|.+.
T Consensus 181 v~~t~-~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 181 VGRTS-QNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEeC-CCcEEEEccCCCc--eEEEE
Confidence 33 4557888888886 55543
No 395
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.015 Score=54.97 Aligned_cols=102 Identities=19% Similarity=0.317 Sum_probs=68.9
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccc
Q 040533 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAA 220 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 220 (364)
-+..++.|+..|.+...|+...-.....-..-.++|++++|+.+|..++.|-.+|.|.+||+.... .++.+..+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k---~l~~i~e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK---ILKVITEHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc---ceeeeeecCCc
Confidence 556788899999999988875322112222345789999999999999999999999999987654 35656555555
Q ss_pred eeEE---EEccCCCcEEEeecCCCCCeEEEEEC
Q 040533 221 VKAL---AWCPYQFNVLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 221 v~~~---~~~~~~~~~~~~~~g~~d~~i~i~d~ 250 (364)
.+++ .+..++. .+.++. ..|. +|.+
T Consensus 175 ~t~vi~v~~t~~nS-~llt~D--~~Gs--f~~l 202 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNS-KLLTSD--TGGS--FWKL 202 (1206)
T ss_pred cceEEEEEEeCCCc-EEEEcc--CCCc--eEEE
Confidence 5444 3344443 455542 4454 5654
No 396
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.012 Score=51.20 Aligned_cols=136 Identities=14% Similarity=0.137 Sum_probs=94.0
Q ss_pred EEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCC-------EEEEEecCCcEEEEecCCc-c-eeeeeecC---
Q 040533 61 IALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAK-------TLAVGYMASKLQLWDAETS-K-LIRNLEGH--- 128 (364)
Q Consensus 61 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~iw~~~~~-~-~~~~~~~~--- 128 (364)
+.....++-.|++.|+.+....+ +. .|+-+.+.|+.+ .-+.|-.+..|.-||.+-. . .+...+.|
T Consensus 352 ~~~~~~l~klDIE~GKIVeEWk~--~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 352 GGEQDKLYKLDIERGKIVEEWKF--ED-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred CCCcCcceeeecccceeeeEeec--cC-CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 33446788889999988666654 23 377778888653 2345667888999997632 2 22222322
Q ss_pred -CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 129 -DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 129 -~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.....|.+-. ...++++|+.+|.|++||- .+......+.+...+|..+..+.+|++++..+ +..+.+-++.
T Consensus 429 ~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 429 TKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 2334454443 5668999999999999996 45555667888889999999999999887655 5677777654
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.12 E-value=0.0021 Score=49.62 Aligned_cols=103 Identities=10% Similarity=0.096 Sum_probs=65.8
Q ss_pred ccEEEEEeCCeEEEEECCCC-ceeeeeeecCCCCCceEEE-EcCCCCEEEEEecCCcEEEEecCCcceeeeeecCC-CcE
Q 040533 56 NNILAIALGLELYLWKQENG-EVQKLLKVTGEDDFPTSIS-WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD-KRV 132 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~v 132 (364)
..+++++.+|.|++|+.... ....... .-...|.++- --.++.+..+++.+|.|+.|+++-++.+.....|. .++
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~--s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVC--SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhh--cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 35788889999999987621 1111111 1122333322 22245588899999999999999888888777777 555
Q ss_pred EEEEeecCCCCEEEEe--eCCCcEEEEEccc
Q 040533 133 ATASWNHWNGHILTSG--SQDKSIINHDVRV 161 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~--~~dg~i~~~d~~~ 161 (364)
.....+. .+..++.+ |.|..++.|++..
T Consensus 149 e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 5555554 55666666 6666777777653
No 398
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.12 E-value=0.085 Score=41.28 Aligned_cols=212 Identities=11% Similarity=0.085 Sum_probs=114.4
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCCCCcceEEe---
Q 040533 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG---NLLASGGDDNLVHVWDHSKMSSSKCLHRF--- 214 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--- 214 (364)
.+.++.+--..|.|.-||..+.......+.+.. ..++.+--.+ .+.+.++..-.|.-||...... ....++
T Consensus 26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a-~v~~t~~ev 102 (310)
T KOG4499|consen 26 RQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESA-KVYRTLFEV 102 (310)
T ss_pred cceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEccccccee-eeeeecccc
Confidence 445555555667777788876553333333322 3333332222 2333333333344566332111 112221
Q ss_pred cc--cccceeEEEEccCCCcEEEeecC------CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCcc
Q 040533 215 RD--HRAAVKALAWCPYQFNVLASGGG------TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 215 ~~--~~~~v~~~~~~~~~~~~~~~~~g------~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
.. .....+.-..+|+|+++.-+-+- ...|.++.|-.. ++.......-.--+.++|+.+.+.+....
T Consensus 103 ~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iD----- 176 (310)
T KOG4499|consen 103 QPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYID----- 176 (310)
T ss_pred CchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEc-----
Confidence 10 13345566778999764433220 012334444321 11111112223346789998888777654
Q ss_pred CCCCeEEEee--CCCCce-----eeeccc----cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCce
Q 040533 287 GDGQKLCLWK--YPHMTK-----WGELQH----QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGL 355 (364)
Q Consensus 287 ~~~~~i~i~d--~~~~~~-----~~~~~~----~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v 355 (364)
+.+-.|.-|| ..++.. +..++. .....-.++...+|.+.+++-..|+|...|..+++.+..+.-....|
T Consensus 177 sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 177 SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence 2356675566 444432 222222 11112345667788888888888999999999999999999889999
Q ss_pred eeeeec
Q 040533 356 LSLKVS 361 (364)
Q Consensus 356 ~~~~~s 361 (364)
++++|-
T Consensus 257 tsccFg 262 (310)
T KOG4499|consen 257 TSCCFG 262 (310)
T ss_pred EEEEec
Confidence 999985
No 399
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.11 Score=42.20 Aligned_cols=267 Identities=10% Similarity=0.037 Sum_probs=137.0
Q ss_pred cCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc---eeeeeecC
Q 040533 52 DWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK---LIRNLEGH 128 (364)
Q Consensus 52 ~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~ 128 (364)
.++.+....+-.+..++|.|+.+.+.......-.-.+--.++.. .|++..++..+.-+.+.|+.+.. +...+...
T Consensus 93 ~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~ 170 (370)
T COG5276 93 RVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALP 170 (370)
T ss_pred EecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccC
Confidence 34445555556677899999987654333322122233344444 58888888766667788886553 33344444
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc-cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH-TAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS 207 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 207 (364)
...-..++. .|++...+..|+-+.+-|+.....+...-.-. ...+.++..+++-.+++... . -+.+-|......
T Consensus 171 ~~d~~~v~I---SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~-e-gvlivd~s~~ss 245 (370)
T COG5276 171 GGDTHDVAI---SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD-E-GVLIVDVSGPSS 245 (370)
T ss_pred CCCceeEEE---ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc-c-ceEEEecCCCCC
Confidence 444566776 67888888899999999998776543322222 23677887777655555443 3 377778776554
Q ss_pred CcceEEecccccc--eeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE---EEEEecCC-CeEEEEEcCCccceeeec
Q 040533 208 SKCLHRFRDHRAA--VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC---IHSVDTKA-QICGLEWNRHHKEILSGH 281 (364)
Q Consensus 208 ~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~~-~v~~~~~~~~~~~l~~~~ 281 (364)
....-... ...+ +..+..+ +++..+.- .+.-+.+-|..+... ...+...+ ....+..+. .++..+.
T Consensus 246 p~~~gsye-t~~p~~~s~v~Vs--~~~~Yvad---ga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~--~y~yiad 317 (370)
T COG5276 246 PTVFGSYE-TSNPVSISTVPVS--GEYAYVAD---GAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYG--NYNYIAD 317 (370)
T ss_pred ceEeeccc-cCCcccccceecc--cceeeeec---cccCceeEeccCCCCCchhccccCCCccccceEEec--CeeEecc
Confidence 33222222 1222 2222332 22333322 234445555543211 11111111 222222211 1111111
Q ss_pred cCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
.+...+-+....+......+....+.+.+.+-+.+.+.+...++.+.+|+..
T Consensus 318 -------kn~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 318 -------KNTGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred -------CCceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 2233333333333332222322334444444456688888999999999863
No 400
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.09 E-value=0.0025 Score=36.24 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=28.3
Q ss_pred ccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 310 TSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 310 ~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
...|..++|+|...+||.++.||.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3568999999999999999999999999983
No 401
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.12 Score=42.01 Aligned_cols=195 Identities=13% Similarity=0.058 Sum_probs=122.0
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc-CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT-AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMS 206 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 206 (364)
-.+-+..+.+ .+++...+..+.-+++.|+.+...+...-.-.. +.-.++. -.|++..++..|.-+.+.|+.+..
T Consensus 85 ~~~l~~Dv~v---se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 85 ARDLFADVRV---SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhhheeEe---cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCC
Confidence 3455667777 567788888888899999988775443322222 3333444 357888888866668899999887
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe---EEEEEecCCCeEEEEEcCCccceeeeccC
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT---CIHSVDTKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
.+...-+.......-..++.+.+ +-.++. .|+-+.+.|+.+.. .+........+.++..+++..+++..
T Consensus 160 sP~lagrya~~~~d~~~v~ISGn--~AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--- 231 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAISGN--YAYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--- 231 (370)
T ss_pred CceeeeeeccCCCCceeEEEecC--eEEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc---
Confidence 76666666555555566777654 344433 68889999997643 34445555678899999888888776
Q ss_pred CccCCCCeEEEeeCCCCceeeeccc--cccc--eeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGELQH--QTSR--ILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~--i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
+..+.+-|..+.+....+.. ...+ ++.+.. .+++...+..+.-+.+-|+.++
T Consensus 232 -----~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 232 -----DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred -----ccceEEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCC
Confidence 55666777666553333221 1111 222222 3445555555555666665554
No 402
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.06 E-value=0.15 Score=44.17 Aligned_cols=174 Identities=13% Similarity=0.093 Sum_probs=85.1
Q ss_pred CeEEEEECCCCceeeeeeecC-CCCCceEEEEcCCCCEEEEEec--------------------CCcEEEEecCCcceee
Q 040533 65 LELYLWKQENGEVQKLLKVTG-EDDFPTSISWSQDAKTLAVGYM--------------------ASKLQLWDAETSKLIR 123 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~--------------------dg~i~iw~~~~~~~~~ 123 (364)
|.+.++|-++.++....+... ....-+.+-|.|..+.+++... ..++.+||+.+.+.++
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q 236 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ 236 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee
Confidence 578888888776655444322 2334567788888888887542 3579999999999999
Q ss_pred eeecCCC--cEEEEEeecC-CCCE-EEEeeCCCcEEEEEc-ccCc----ceeee----------------eecccCcEEE
Q 040533 124 NLEGHDK--RVATASWNHW-NGHI-LTSGSQDKSIINHDV-RVSN----NVTSR----------------INAHTAEVCG 178 (364)
Q Consensus 124 ~~~~~~~--~v~~~~~~~~-~~~~-l~~~~~dg~i~~~d~-~~~~----~~~~~----------------~~~~~~~v~~ 178 (364)
++.-... ....+.|..+ +..+ ++.+.-..+|..|-- +.+. .++.. +..-..-|+.
T Consensus 237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD 316 (461)
T PF05694_consen 237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD 316 (461)
T ss_dssp EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence 8874332 3556777431 3333 333334445555433 2221 11111 0011345789
Q ss_pred EEEcCCCCEEEEEe-CCCeEEEEeCCCCCCCcceEEecc----------------cccceeEEEEccCCCcEEEeec
Q 040533 179 LKWSNEGNLLASGG-DDNLVHVWDHSKMSSSKCLHRFRD----------------HRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 179 ~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
+..|.|.++|..+. .+|.|+.||+......+.+.+..- -.+...-+..|-||+.+.+|.+
T Consensus 317 I~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 317 ILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred EEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 99999999888766 689999999998766555544321 1122356777888888888754
No 403
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.05 E-value=0.14 Score=45.68 Aligned_cols=153 Identities=14% Similarity=0.195 Sum_probs=90.8
Q ss_pred CCceEEEEcCCCCEEEEEe---cCCcEEEEecCCcceeeeeecCCCcEEEEEeecC---CCCEEEEeeCCCcEEEEEccc
Q 040533 88 DFPTSISWSQDAKTLAVGY---MASKLQLWDAETSKLIRNLEGHDKRVATASWNHW---NGHILTSGSQDKSIINHDVRV 161 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~~~d~~~ 161 (364)
.++..++|. ||+.++-.. .+|.+++=| .+.+..| +.|..+.|.|. +...|++.-....|.+|.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 467889997 676555432 233332222 2233333 45899999883 122455556677899998862
Q ss_pred Cc----ceeeeeec-----ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 162 SN----NVTSRINA-----HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 162 ~~----~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
.. +....... ..--...+.|+|....|++-.....-.+++++.... +....+ ...+.|.|.+|.+||..
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQR 169 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCE
Confidence 21 11111101 111124577999988888777665556666664432 222233 35678999999999988
Q ss_pred EEEeecCCCCCeEEEEECCC
Q 040533 233 VLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~ 252 (364)
++++.+ ..=.-++||-..
T Consensus 170 LVVAvG--SsLHSyiWd~~q 187 (671)
T PF15390_consen 170 LVVAVG--SSLHSYIWDSAQ 187 (671)
T ss_pred EEEEeC--CeEEEEEecCch
Confidence 888765 455678888543
No 404
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.02 E-value=0.0026 Score=49.15 Aligned_cols=142 Identities=12% Similarity=0.103 Sum_probs=80.4
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEE-EEcCCCCEEEEEecCCcEEEEecCC-cceeeeeecCCCcEEEE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSI-SWSQDAKTLAVGYMASKLQLWDAET-SKLIRNLEGHDKRVATA 135 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~ 135 (364)
+++-+.++.|.-+++...+..... ...+.+. ..-.-+..+++|+.+|.|.+|+... +.....+..-...|.++
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rs-----e~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRS-----ERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hccccCCcccccchhhhhhhhhhh-----hhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 555666777776666543321111 1111111 1112345789999999999998762 22222222223344444
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc-CcEEEEEEcCCCCEEEEE--eCCCeEEEEeCCCC
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT-AEVCGLKWSNEGNLLASG--GDDNLVHVWDHSKM 205 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~ 205 (364)
.-.-.++.+..++..+|.|+.|++...+. ......|. .++..+..+..++.++.+ +.|..++.|++...
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCce-eeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 33332556899999999999999885553 44444555 445555555555566666 66666777776543
No 405
>PRK10115 protease 2; Provisional
Probab=96.93 E-value=0.39 Score=45.59 Aligned_cols=242 Identities=8% Similarity=0.002 Sum_probs=117.1
Q ss_pred CceEEEEcCCCCEEEEEec-----CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC------CcEEEE
Q 040533 89 FPTSISWSQDAKTLAVGYM-----ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD------KSIINH 157 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~~ 157 (364)
.+..+.|+||+++|+.+.. .-.|++.|+.+++.+...-.... ..++|.+ +++.|+....+ ..|+.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEEE
Confidence 4667889999999887643 23589999988864332221221 4699999 66655544332 357777
Q ss_pred EcccCcc-eeeeeecccCcEE-EEEEcCCCCEEEEEe---CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 158 DVRVSNN-VTSRINAHTAEVC-GLKWSNEGNLLASGG---DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 158 d~~~~~~-~~~~~~~~~~~v~-~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
++.++.. -...+........ ....+.++++++..+ .++.+.+++...... .....+.........+. +..+..
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA-EPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC-CceEEEECCCCCEEEEE-eCCCEE
Confidence 8776631 1223332222233 333344777666544 345788888543221 11111111122222222 223333
Q ss_pred EEEeecCCCCCeEEEEECCC-CeEEEEEec--CCCeEEEEEcCCccceeeeccCCccCCCCe--EEEeeCCCCceeeecc
Q 040533 233 VLASGGGTQDGCIKIWNVQK-GTCIHSVDT--KAQICGLEWNRHHKEILSGHGFSSSGDGQK--LCLWKYPHMTKWGELQ 307 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~--i~i~d~~~~~~~~~~~ 307 (364)
++.+..+.....|...++.+ ++....+.. ...+..+.+..+ ..++... .++. +.+++...+ .+..+.
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~------~~g~~~l~~~~~~~~-~~~~l~ 354 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEER------QRGLTSLRQINRKTR-EVIGIA 354 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEE------eCCEEEEEEEcCCCC-ceEEec
Confidence 34443222334555556552 222222333 235777777733 3333332 1444 455554433 333332
Q ss_pred -ccccceeEEeec--CCCC-EEEEEeC---CCcEEEEEeeCCC
Q 040533 308 -HQTSRILELSQS--PDGL-TVVSAAA---DETLRFWEAFGPS 343 (364)
Q Consensus 308 -~~~~~i~~i~~~--~~~~-~l~~~~~---dg~i~vw~~~~~~ 343 (364)
.....+..+.++ +++. ++++.++ -+.+..+|+.+++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 355 FDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 222223333444 3333 4444432 3567777776543
No 406
>PRK10115 protease 2; Provisional
Probab=96.92 E-value=0.4 Score=45.54 Aligned_cols=200 Identities=10% Similarity=0.062 Sum_probs=104.7
Q ss_pred cEEEEEeecCCCCEEEEeeC-C----CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC------CeEEE
Q 040533 131 RVATASWNHWNGHILTSGSQ-D----KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD------NLVHV 199 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~~-d----g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i 199 (364)
.+..+.|+| ++++|+.+.. + ..|++.|+.++..+...+..- -..++|.+|++.|+....+ ..|+.
T Consensus 128 ~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 466788899 8887776532 2 358888887665322322221 1459999998866665432 36777
Q ss_pred EeCCCCCCCcceEEeccccccee-EEEEccCCCcEEEeecCCCCCeEEEEECC--CCeEEEEEecC-CCeEEEEEcCCcc
Q 040533 200 WDHSKMSSSKCLHRFRDHRAAVK-ALAWCPYQFNVLASGGGTQDGCIKIWNVQ--KGTCIHSVDTK-AQICGLEWNRHHK 275 (364)
Q Consensus 200 wd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~~~~~~~~~~~-~~v~~~~~~~~~~ 275 (364)
+++.+.... ....+........ .+..+.++.++++......++.+.+++.. ++.....+... .....+. +..+.
T Consensus 204 h~lgt~~~~-d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 281 (686)
T PRK10115 204 HTIGTPASQ-DELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHR 281 (686)
T ss_pred EECCCChhH-CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCE
Confidence 887765221 1222222222222 33344477676665544456789999953 34333233332 2222222 22333
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeeecccc-c-cceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-T-SRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~-~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
+.+.... ......|...++........+-.+ . ..|..+.+. .+.++++...+|.-+++-+.
T Consensus 282 ly~~tn~---~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 282 FYLRSNR---HGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEEEcC---CCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 3333221 122344555555432223333334 2 367788887 33456666777776666554
No 407
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.92 E-value=0.16 Score=41.04 Aligned_cols=194 Identities=12% Similarity=0.122 Sum_probs=111.6
Q ss_pred cEEeeCCCCCCCcceeecccCCC-ccEEEEE-eC--CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC
Q 040533 33 EARILDAPNLRNDYYSNMMDWGR-NNILAIA-LG--LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA 108 (364)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~--~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 108 (364)
...+++...+....+...+.+.. +.++-++ .- ..|+.+|+.+++......++. .-.--.++... ++.....-.+
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~-d~l~qLTWk~ 109 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILG-DKLYQLTWKE 109 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEET-TEEEEEESSS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEEC-CEEEEEEecC
Confidence 34566665666777888888844 4443333 22 389999999999877666643 22233455543 3344444578
Q ss_pred CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec--c---cCcEEEEEEcC
Q 040533 109 SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA--H---TAEVCGLKWSN 183 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~---~~~v~~~~~~~ 183 (364)
+...+||.++.+.+.++.- .+.=+.++. +++.|+.+.....+.++|..+.+. ...+.. . -..++.+.|-
T Consensus 110 ~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~~LNELE~i- 183 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVSNLNELEYI- 183 (264)
T ss_dssp SEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE---EEEEEEE-
T ss_pred CeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccce-EEEEEEEECCEECCCcEeEEEE-
Confidence 9999999999998888874 455677774 677777776677899999876543 222211 1 1235556664
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCcceEEec---------------ccccceeEEEEccCCCcEEEee
Q 040533 184 EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR---------------DHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 184 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
+|...|=.-....|...|..++. .+..+. ....-.+.|+++|....+++||
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~---V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGK---VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-B---EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cCEEEEEeCCCCeEEEEeCCCCe---EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 45444444444556666644432 222110 0134578999999999999987
No 408
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.90 E-value=0.18 Score=41.35 Aligned_cols=221 Identities=13% Similarity=0.114 Sum_probs=126.1
Q ss_pred cEEEEEeecCCCCEEEEeeCCCcEEEEEcc------cCcceeeeeec-----ccCcEEEEEEcCCCC------------E
Q 040533 131 RVATASWNHWNGHILTSGSQDKSIINHDVR------VSNNVTSRINA-----HTAEVCGLKWSNEGN------------L 187 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~------~~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~ 187 (364)
.-+.|+++| .+.+-++....+...+||.. ..+.+...+.. .....+.+.|+.... .
T Consensus 24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 457899999 78888887778899999986 22233333331 224567777764322 3
Q ss_pred EEEEeCCCeEEEEeCCCCCCC--cceEEec-ccccce-eEEEEc--cCCCcEEEeecCCCCCeEEEEECCCCeEEE--EE
Q 040533 188 LASGGDDNLVHVWDHSKMSSS--KCLHRFR-DHRAAV-KALAWC--PYQFNVLASGGGTQDGCIKIWNVQKGTCIH--SV 259 (364)
Q Consensus 188 l~~~~~d~~i~iwd~~~~~~~--~~~~~~~-~~~~~v-~~~~~~--~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~~ 259 (364)
++.+++||+|.-|.-.-.... .....+. ...+.| ..+++. ..+..|.++-- ..++|.+||-.-.+... .+
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF--~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF--RQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc--CCCceEEecCccccccCCCCc
Confidence 677889999999984322110 1112221 112333 345554 33556777655 78999999864332210 01
Q ss_pred ec-----------------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc--ccccceeEEeecC
Q 040533 260 DT-----------------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ--HQTSRILELSQSP 320 (364)
Q Consensus 260 ~~-----------------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~ 320 (364)
.. .-.|+-..-.++...-+.+ ..-|.|-+||+. ++.++++. +.-...+.|+..|
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G------~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~AP 253 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAG------AGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAP 253 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccC------CCcceEEEEcCC-CcEEEEeccCCcccCCceeeeCh
Confidence 00 0011222222233222222 226789999964 66666653 2334456777655
Q ss_pred ------CCCEEEEEeCCCcEEEEEeeCCCCCcceecc------CCceeeeeec
Q 040533 321 ------DGLTVVSAAADETLRFWEAFGPSGSGDFVSH------LDGLLSLKVS 361 (364)
Q Consensus 321 ------~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~------~~~v~~~~~s 361 (364)
.|.+|+---.||+|..||..+++.+..+... .+.+++|+|.
T Consensus 254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fG 306 (336)
T TIGR03118 254 ESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFG 306 (336)
T ss_pred hhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeC
Confidence 4566666667999999999988876666533 2345666654
No 409
>PHA03098 kelch-like protein; Provisional
Probab=96.90 E-value=0.13 Score=47.32 Aligned_cols=178 Identities=13% Similarity=0.152 Sum_probs=86.5
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC-----CcEEEEecCCcceeee--eecCCCcEEEEEee
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA-----SKLQLWDAETSKLIRN--LEGHDKRVATASWN 138 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~ 138 (364)
.+..||..+++......+.........+.+ ++...+.|+.+ ..+..||..+++.... +.........+..
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~- 388 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV- 388 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE-
Confidence 578888888877554443322222223332 56777788765 3477888876643321 1111111112222
Q ss_pred cCCCCEEEEeeCC------CcEEEEEcccCcceeeeeeccc--CcEEEEEEcCCCCEEEEEeCC--------CeEEEEeC
Q 040533 139 HWNGHILTSGSQD------KSIINHDVRVSNNVTSRINAHT--AEVCGLKWSNEGNLLASGGDD--------NLVHVWDH 202 (364)
Q Consensus 139 ~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~ 202 (364)
++.+++.|+.+ ..+..||+.+..- ....... ..-.++. ..++..++.|+.+ ..+.+||.
T Consensus 389 --~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 463 (534)
T PHA03098 389 --NNLIYVIGGISKNDELLKTVECFSLNTNKW--SKGSPLPISHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNP 463 (534)
T ss_pred --CCEEEEECCcCCCCcccceEEEEeCCCCee--eecCCCCccccCceEE-EECCEEEEECCccCCCCCcccceEEEecC
Confidence 67777777732 3578888876542 1111111 0011222 2255666666643 23788887
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---CCeEEEEECCCCeE
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ---DGCIKIWNVQKGTC 255 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~ 255 (364)
.+..- ..+..+.........+.+ ++ .+++.||... .+.+.+||..+.+-
T Consensus 464 ~~~~W-~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 464 VTNKW-TELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCCce-eeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 75432 112111111111112222 33 6777765111 24678888776543
No 410
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.87 E-value=0.42 Score=45.18 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=53.3
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCC----------cce---eeee--------ecCCCcEEEEEeecC--CCCE
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAET----------SKL---IRNL--------EGHDKRVATASWNHW--NGHI 144 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~----------~~~---~~~~--------~~~~~~v~~~~~~~~--~~~~ 144 (364)
-.|..+.++|+|++||..+..| |.|..+.. |+. .+++ ..+...|..+.|+|. ++..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4678899999999999988765 44444421 111 1111 123457899999994 2588
Q ss_pred EEEeeCCCcEEEEEcccCcc
Q 040533 145 LTSGSQDKSIINHDVRVSNN 164 (364)
Q Consensus 145 l~~~~~dg~i~~~d~~~~~~ 164 (364)
|+.-..|+++++||+.....
T Consensus 164 l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred EEEEecCCEEEEEecCCCCC
Confidence 99999999999999976543
No 411
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.72 E-value=0.25 Score=40.41 Aligned_cols=146 Identities=13% Similarity=0.168 Sum_probs=86.5
Q ss_pred cEEEEEeecCCCCEEEEee---CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCC
Q 040533 131 RVATASWNHWNGHILTSGS---QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD-HSKMS 206 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd-~~~~~ 206 (364)
.+.+.++++ ++..++... ....+.++.. +....... ....+....|++++...+....+...+++. .....
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688899999 777666555 2234455443 33323222 223678889999987776666666666663 22222
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECC---CC------eEEEEE-ecCCCeEEEEEcCCccc
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ---KG------TCIHSV-DTKAQICGLEWNRHHKE 276 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~---~~------~~~~~~-~~~~~v~~~~~~~~~~~ 276 (364)
..............|..+.++|||..+++......++.|.+--+. .+ ...... .....+..+.|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 111111111112289999999999988777532235777766543 23 111111 12357899999999998
Q ss_pred eeeec
Q 040533 277 ILSGH 281 (364)
Q Consensus 277 l~~~~ 281 (364)
++.+.
T Consensus 180 ~V~~~ 184 (253)
T PF10647_consen 180 VVLGR 184 (253)
T ss_pred EEEeC
Confidence 88764
No 412
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.025 Score=53.96 Aligned_cols=148 Identities=15% Similarity=0.060 Sum_probs=93.9
Q ss_pred CCceEEEEcCCCCEEEEEe--cCCcEEEEecCCcceee-----ee------ecCCCcEEEEEeecCCCCEEEEeeCCCcE
Q 040533 88 DFPTSISWSQDAKTLAVGY--MASKLQLWDAETSKLIR-----NL------EGHDKRVATASWNHWNGHILTSGSQDKSI 154 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~-----~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 154 (364)
-.+..+..++|+...++.. .+-.|..||+++-..-. -+ ........++.|+|.-....+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3456666677876555443 33368899987532211 11 11234466788998555667788889999
Q ss_pred EEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc-cccceeEEEEccCCCcE
Q 040533 155 INHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD-HRAAVKALAWCPYQFNV 233 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 233 (364)
++..+.........+ ......++++|+|.|+.++.|-..|++.-|...-. ....+..... ....|.+++|-....++
T Consensus 181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEE
Confidence 988876544333332 34566899999999999999999999988864321 1111111111 24679999998776555
Q ss_pred EEee
Q 040533 234 LASG 237 (364)
Q Consensus 234 ~~~~ 237 (364)
++-+
T Consensus 259 vvy~ 262 (1405)
T KOG3630|consen 259 VVYG 262 (1405)
T ss_pred EEec
Confidence 5544
No 413
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.65 E-value=0.12 Score=46.04 Aligned_cols=118 Identities=14% Similarity=0.241 Sum_probs=74.3
Q ss_pred CCCCCceEEEEcCC----CCEEEEEecCCcEEEEecC-----Ccceeeeeec-CCC--c--EEEEEeecCCCCEEEEeeC
Q 040533 85 GEDDFPTSISWSQD----AKTLAVGYMASKLQLWDAE-----TSKLIRNLEG-HDK--R--VATASWNHWNGHILTSGSQ 150 (364)
Q Consensus 85 ~~~~~v~~~~~s~~----~~~l~~~~~dg~i~iw~~~-----~~~~~~~~~~-~~~--~--v~~~~~~~~~~~~l~~~~~ 150 (364)
|.-..|..+.|.|- ...|++......|.||.+. +++.+..-.. ..+ + -..+.|+| ...+|++-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence 44456899999994 3234444457789999975 2232222111 111 1 23578999 8888887776
Q ss_pred CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC-CeEEEEeCC
Q 040533 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD-NLVHVWDHS 203 (364)
Q Consensus 151 dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~ 203 (364)
...-.++++......++.--...+.|.|.+|.+||+.|+++-.. =.-++||-.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 65556677766554343333456789999999999988776433 345788843
No 414
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.65 E-value=0.021 Score=49.14 Aligned_cols=128 Identities=13% Similarity=0.139 Sum_probs=63.0
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC--CCEEEEEe-cCCcEEEEec-CCcc----eeeeeec--------
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD--AKTLAVGY-MASKLQLWDA-ETSK----LIRNLEG-------- 127 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~-~dg~i~iw~~-~~~~----~~~~~~~-------- 127 (364)
...+.+||+.+.+..+.+.+......+..+.|..+ ..+=++|+ -.++|..|-- +.++ .+..+..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 47999999999999988888544445778888764 33333332 3444554433 3332 1222211
Q ss_pred ---------CCCcEEEEEeecCCCCEEEE-eeCCCcEEEEEcccCcceeeeeec------------------ccCcEEEE
Q 040533 128 ---------HDKRVATASWNHWNGHILTS-GSQDKSIINHDVRVSNNVTSRINA------------------HTAEVCGL 179 (364)
Q Consensus 128 ---------~~~~v~~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~------------------~~~~v~~~ 179 (364)
-..-|+.|..|. +.++|.. +--+|.|+.||+.....+...-+- -.+...-+
T Consensus 301 p~ml~~~~~~P~LitDI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISL-DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp -GGGGGG-EE------EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred cccccccccCCCceEeEEEcc-CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 024578899999 6666554 456899999999876543322110 11223556
Q ss_pred EEcCCCCEEEEEe
Q 040533 180 KWSNEGNLLASGG 192 (364)
Q Consensus 180 ~~~~~~~~l~~~~ 192 (364)
..|-||+.|+..+
T Consensus 380 qlS~DGkRlYvTn 392 (461)
T PF05694_consen 380 QLSLDGKRLYVTN 392 (461)
T ss_dssp EE-TTSSEEEEE-
T ss_pred EEccCCeEEEEEe
Confidence 6677777666553
No 415
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.44 Score=43.99 Aligned_cols=182 Identities=7% Similarity=0.048 Sum_probs=94.0
Q ss_pred CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee--eeeecccCcEEEEEEcCCCC
Q 040533 109 SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT--SRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~ 186 (364)
-.|+||+. +|..+..+.-....+-.+.|+ +...|++...+|++.+|++-...... .-.......|..+.+..+|-
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 45888886 466665554444578889998 56678888999999999986332111 11122233455555555663
Q ss_pred EEEEEeCCCeEEEEe-CCCCCCCcceEEecc---cccceeEEEEccCCC--cEEE-eecCCCCC-eEEEEECCCCeEEEE
Q 040533 187 LLASGGDDNLVHVWD-HSKMSSSKCLHRFRD---HRAAVKALAWCPYQF--NVLA-SGGGTQDG-CIKIWNVQKGTCIHS 258 (364)
Q Consensus 187 ~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~--~~~~-~~~g~~d~-~i~i~d~~~~~~~~~ 258 (364)
.+++ .+|.+.+-. .... .+.++.. ...+-.|-...+++. .++. ..- ..+ .+..-+..+.+...-
T Consensus 141 avlt--~~g~v~~i~~~~~~----~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~--~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLT--VSGQVILINGVEEP----KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV--AVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEe--cCCcEEEEcCCCcc----hhhhCCCCCCccCCCcceeEecCCCcceeEEeech--hhhhcccceeccccccccc
Confidence 3333 345554433 2221 1222211 111112222222211 1111 100 000 011111111222211
Q ss_pred EecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc
Q 040533 259 VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 259 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 307 (364)
....+.+..+..||+.++++.-.. .|.|.+-+....+...++.
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt~------~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYTE------TGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEec------CCcEEEEecchhhhhhccC
Confidence 122467888999999999987644 8889888887777766665
No 416
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.53 E-value=0.32 Score=39.36 Aligned_cols=192 Identities=11% Similarity=0.087 Sum_probs=110.8
Q ss_pred ceeeeeecCCC--cEEEEEeecCCCCEEEEeeCCC--cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCC
Q 040533 120 KLIRNLEGHDK--RVATASWNHWNGHILTSGSQDK--SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDN 195 (364)
Q Consensus 120 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 195 (364)
+.+.++. |+. -...+.|.. ++.++-+.+.-| .|+.+|+.+++......-....--..++... +++....-.++
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~ 110 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSS
T ss_pred EEEEECC-CCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCC
Confidence 3445554 432 344677755 788888888776 6889999988743332222222223344443 33444455788
Q ss_pred eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC------CCeEEEE
Q 040533 196 LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK------AQICGLE 269 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~------~~v~~~~ 269 (364)
...+||..+. +.+.++.- .+.=+.++ .++..++.+-| ...++++|..+.+..+.+... ..++-+.
T Consensus 111 ~~f~yd~~tl---~~~~~~~y-~~EGWGLt--~dg~~Li~SDG---S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE 181 (264)
T PF05096_consen 111 TGFVYDPNTL---KKIGTFPY-PGEGWGLT--SDGKRLIMSDG---SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE 181 (264)
T ss_dssp EEEEEETTTT---EEEEEEE--SSS--EEE--ECSSCEEEE-S---SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred eEEEEccccc---eEEEEEec-CCcceEEE--cCCCEEEEECC---ccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence 9999997654 33555432 34456666 45668888765 678999999888777766432 3466677
Q ss_pred EcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc------------c---ccceeEEeecCCCCEEEEEeC
Q 040533 270 WNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH------------Q---TSRILELSQSPDGLTVVSAAA 330 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~------------~---~~~i~~i~~~~~~~~l~~~~~ 330 (364)
+- +|...+-.. ....|...|..+|+....+.- + ..-.+.|++.|....|...+.
T Consensus 182 ~i-~G~IyANVW------~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 182 YI-NGKIYANVW------QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EE-TTEEEEEET------TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EE-cCEEEEEeC------CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 75 444333322 277888889999988765421 1 245789999987765555443
No 417
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.045 Score=52.39 Aligned_cols=146 Identities=11% Similarity=0.099 Sum_probs=92.0
Q ss_pred CcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCCCCcc--eEEe------cccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 174 AEVCGLKWSNEGNLLASGG--DDNLVHVWDHSKMSSSKC--LHRF------RDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~--~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
-++..+...+|+...++.. .+-.|..||++....... ...+ ........++.|+|.-....+... .|+
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l--~dl 178 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL--SDL 178 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc--ccc
Confidence 3556666677766554443 344789999886433211 1111 112334567889987655555444 789
Q ss_pred eEEEEECCCC-eEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc---c-ccceeEEee
Q 040533 244 CIKIWNVQKG-TCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH---Q-TSRILELSQ 318 (364)
Q Consensus 244 ~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~-~~~i~~i~~ 318 (364)
.|++..+.-. .....+......++++|+|.|+.+++|.. .|++.-|... ++....+.. . ...|.+|.|
T Consensus 179 sl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n------nGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN------NGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred chhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC------CCeEEEeecc-cceeecccCCCcCCCcceeEEEE
Confidence 8988876543 22344455677899999999999999965 8888887743 332222221 1 367899999
Q ss_pred cCCCCEEEEE
Q 040533 319 SPDGLTVVSA 328 (364)
Q Consensus 319 ~~~~~~l~~~ 328 (364)
-....+|++-
T Consensus 252 l~t~eflvvy 261 (1405)
T KOG3630|consen 252 LSTQEFLVVY 261 (1405)
T ss_pred ecceeEEEEe
Confidence 8777776653
No 418
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.38 E-value=0.38 Score=42.35 Aligned_cols=144 Identities=17% Similarity=0.180 Sum_probs=92.9
Q ss_pred CCCEEE-EEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCC------CCEEEEeeCCCcEEEEEcccCcceeeeee
Q 040533 98 DAKTLA-VGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWN------GHILTSGSQDKSIINHDVRVSNNVTSRIN 170 (364)
Q Consensus 98 ~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 170 (364)
+..++. .|.....++-.|++.|+.+.....|... -+.|.|.. ...-+.|-.+..|.-.|.+.....+.. .
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v-~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV-V 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee-e
Confidence 444443 3555567888899999999988877654 56777621 122344555666777777655532221 1
Q ss_pred cccCcEEEEEEcC----CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEE
Q 040533 171 AHTAEVCGLKWSN----EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIK 246 (364)
Q Consensus 171 ~~~~~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 246 (364)
.....++.-.|+. ...++|.++..|.|++||--.... -..+.+-...|..+..+.+|.++++++ ...+.
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rA---KtalP~lG~aIk~idvta~Gk~ilaTC----k~yll 627 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRA---KTALPGLGDAIKHIDVTANGKHILATC----KNYLL 627 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcchh---hhcCcccccceeeeEeecCCcEEEEee----cceEE
Confidence 2223333333433 344999999999999999543222 233445567889999999999999986 57788
Q ss_pred EEECC
Q 040533 247 IWNVQ 251 (364)
Q Consensus 247 i~d~~ 251 (364)
+-|++
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 88875
No 419
>PHA02790 Kelch-like protein; Provisional
Probab=96.36 E-value=0.58 Score=42.45 Aligned_cols=172 Identities=12% Similarity=0.052 Sum_probs=84.0
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC--CcEEEEecCCcceee--eeecCCCcEEEEEeecCC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA--SKLQLWDAETSKLIR--NLEGHDKRVATASWNHWN 141 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~ 141 (364)
.+..||..+++......+.........+. -++...++|+.+ ..+..||..+++... .+.........+.. +
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~---~ 362 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI---N 362 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE---C
Confidence 67789988887655554432222222222 367777777754 357888876554322 22211112222333 7
Q ss_pred CCEEEEeeCCC---cEEEEEcccCcceee-eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc
Q 040533 142 GHILTSGSQDK---SIINHDVRVSNNVTS-RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH 217 (364)
Q Consensus 142 ~~~l~~~~~dg---~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 217 (364)
+.+.+.|+.++ .+..||.++..-... .+....... +++ .-++++.+.| |.+.+||.++..- ..+..+...
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~W-~~~~~m~~~ 436 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNTW-TLIDDPIYP 436 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEEC---CceEEecCCCCcE-eEcCCCCCC
Confidence 88888888654 467788775542111 011011111 221 2245555555 3567888765422 222222211
Q ss_pred ccceeEEEEccCCCcEEEeecCCCC-----CeEEEEECCCC
Q 040533 218 RAAVKALAWCPYQFNVLASGGGTQD-----GCIKIWNVQKG 253 (364)
Q Consensus 218 ~~~v~~~~~~~~~~~~~~~~~g~~d-----~~i~i~d~~~~ 253 (364)
.... +++.. ++ .+++.|| .+ ..+..||..++
T Consensus 437 r~~~-~~~v~-~~-~IYviGG--~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 437 RDNP-ELIIV-DN-KLLLIGG--FYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cccc-EEEEE-CC-EEEEECC--cCCCcccceEEEEECCCC
Confidence 1222 22222 23 6777775 32 34666666554
No 420
>PRK13684 Ycf48-like protein; Provisional
Probab=96.30 E-value=0.61 Score=40.01 Aligned_cols=152 Identities=11% Similarity=0.093 Sum_probs=85.0
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC-cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVS-NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS 207 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 207 (364)
...+..+.+.| ++.+++++ ..|.+..- .+.+ +........-...++++.+.++++.++++ ..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688899988 77665554 45554432 1122 22222223345678999999998876665 467665322233322
Q ss_pred CcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe----cCCCeEEEEEcCCccceeeecc
Q 040533 208 SKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD----TKAQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 208 ~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~ 282 (364)
.+.+... ......+..+.+.|++ .+++++ .+|.+. .....++.-.... .......+.+..+++.+++|.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G---~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~- 321 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPG-EIWAGG---GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ- 321 (334)
T ss_pred cccccCCccccccceeeEEEcCCC-CEEEEc---CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC-
Confidence 2221111 0112347788898876 466655 467554 3444444433332 123577788887888877764
Q ss_pred CCccCCCCeEEEee
Q 040533 283 FSSSGDGQKLCLWK 296 (364)
Q Consensus 283 ~~~~~~~~~i~i~d 296 (364)
.|.|..++
T Consensus 322 ------~G~il~~~ 329 (334)
T PRK13684 322 ------RGVLLRYV 329 (334)
T ss_pred ------CceEEEec
Confidence 67776665
No 421
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.21 Score=43.16 Aligned_cols=105 Identities=13% Similarity=0.129 Sum_probs=74.1
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee----eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI----RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
..+++|.++.||+|.+.||+--.+.+|.+++....+.. .+.+.....|....|+. + .-+|..+..| +-+|...
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-S-TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-C-eeEEEEecCC-eEEEEEc
Confidence 44679999999999999999999999999998433222 22233455688999985 4 4455554444 5566555
Q ss_pred cCcceeeeeecccCcEEEEEEcCCCCEEEEEe
Q 040533 161 VSNNVTSRINAHTAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 192 (364)
.....++..+.|+..|+...|.++.+.++-++
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 44444666778888999999999877544443
No 422
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.26 E-value=0.26 Score=45.38 Aligned_cols=116 Identities=12% Similarity=0.142 Sum_probs=71.1
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC--CCCEEEEEeCCCeEEEEeCC----
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN--EGNLLASGGDDNLVHVWDHS---- 203 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~---- 203 (364)
....-+.-+. .++..++-+....+.|||.+.+.......-...+.|.++.|.. +++.+++.+..+.|.+|--.
T Consensus 30 ~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3344444444 4444444444557999999866522222224478899999964 88888888889999988532
Q ss_pred --CCCCCcceEEe--cccc-cceeEEEEccCCCcEEEeecCCCCCeEEEEECC
Q 040533 204 --KMSSSKCLHRF--RDHR-AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 204 --~~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 251 (364)
......++..+ ..++ .+|.+..|.++|. +++.+ .+.+.|+|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s----GNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS----GNQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe----CCEEEEECCC
Confidence 11112223322 2233 6789999999984 44332 4788888753
No 423
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.31 Score=47.98 Aligned_cols=232 Identities=11% Similarity=0.050 Sum_probs=102.2
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCC-cEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDK-RVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
......++|+|...++|.|+..|.|++|-...-+.......... .+..+.+-. ..........+..+.+|.......
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~~~~- 112 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLV-GISRNLVLSDDDSLHLWSIKIKTG- 112 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeee-cccccceeecccceeeecccccce-
Confidence 44567789999999999999999999997543332222111110 112122211 112222233344455554432221
Q ss_pred eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEE-ecccccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 166 TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR-FRDHRAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
......+++..-.+--.. +-+ ..+.+++||..-......... +..+...+ ....++.-...... .+-.
T Consensus 113 ----~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~----~~~~ 181 (993)
T KOG1983|consen 113 ----VFLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVP-YESLSPTLSIEGLV----IDLD 181 (993)
T ss_pred ----eecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccce-eeeeccceeeeccc----cccc
Confidence 112233333332222223 344 778888888543221111110 00010000 00000000000000 0111
Q ss_pred EEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCE
Q 040533 245 IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLT 324 (364)
Q Consensus 245 i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 324 (364)
-.++.+.... ........++.+..+....+.+..+. .+.+.+|+.........+... ...+++++..
T Consensus 182 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 248 (993)
T KOG1983|consen 182 TVLISLPDAY-LGLSLIEYESLQVLYYSPTKILIGFN-------RGLVVIKDRASKYVQSAYLPN-----GQLESRDGSH 248 (993)
T ss_pred cceeeccccc-ccccccccccceeeeecCCCcceeee-------eeeeeehhcccccchhhcccc-----cccCccCCce
Confidence 1111111111 01111223444444444444444332 556666665443333333221 1122789999
Q ss_pred EEEEeCCCcEEEEEeeCCCC
Q 040533 325 VVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 325 l~~~~~dg~i~vw~~~~~~~ 344 (364)
++++..||.+.+||...+..
T Consensus 249 ~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 249 FVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred EEEEEecCCEEeeecCCCce
Confidence 99999999999999998754
No 424
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.21 E-value=0.45 Score=43.87 Aligned_cols=114 Identities=20% Similarity=0.291 Sum_probs=72.3
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee-cCCCcEEEEEeec-CCCCEEEEeeCCCcEEEEEcc----
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE-GHDKRVATASWNH-WNGHILTSGSQDKSIINHDVR---- 160 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~~d~~---- 160 (364)
-..+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|.. .+++.+++.+....|.+|.-.
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3445555555555544454445579999998876443222 3578899999953 167788888888888887531
Q ss_pred -cCcc---eee--eeeccc-CcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 161 -VSNN---VTS--RINAHT-AEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 161 -~~~~---~~~--~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
...+ .+. .+..++ .+|.+..|.++|.+++.+ +..+.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1111 111 123344 678999999999655544 456888873
No 425
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.16 E-value=0.59 Score=38.48 Aligned_cols=220 Identities=10% Similarity=0.156 Sum_probs=123.1
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecC------Cc-ceeeeeec-----CCCcEEEEEeecCCCC------------E
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAE------TS-KLIRNLEG-----HDKRVATASWNHWNGH------------I 144 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~~------------~ 144 (364)
....|+++|.+.+-++....+...+||.. .. .++..+.. .....+.+.|+. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 34689999999888887778899999986 11 22333331 224567788875 222 3
Q ss_pred EEEeeCCCcEEEEEcccCcc----eeeeee-cccCcE-EEEEEcC--CCCEEEEEe-CCCeEEEEeCCCCCCCcceEEec
Q 040533 145 LTSGSQDKSIINHDVRVSNN----VTSRIN-AHTAEV-CGLKWSN--EGNLLASGG-DDNLVHVWDHSKMSSSKCLHRFR 215 (364)
Q Consensus 145 l~~~~~dg~i~~~d~~~~~~----~~~~~~-~~~~~v-~~~~~~~--~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~ 215 (364)
++.+++||+|.-|....... ....+. .....| ..+++.. .+.+|+.+. ..++|.+||-.-.. +..-.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~----~~~~g 178 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP----PPLPG 178 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc----ccCCC
Confidence 57788999999998543322 111221 112333 3455543 344555443 67889999843221 11000
Q ss_pred ccccceeEEEEccC-----CCcEEEeec-----------CCCCCeEEEEECCCCeEEEEEecCCC---eEEEEEcC----
Q 040533 216 DHRAAVKALAWCPY-----QFNVLASGG-----------GTQDGCIKIWNVQKGTCIHSVDTKAQ---ICGLEWNR---- 272 (364)
Q Consensus 216 ~~~~~v~~~~~~~~-----~~~~~~~~~-----------g~~d~~i~i~d~~~~~~~~~~~~~~~---v~~~~~~~---- 272 (364)
...++-.-.-|.|. +..++++-. |.--|.|-+||+ +++.++.+..... ...|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 00000000001110 112222211 113578999997 5778887765533 45666655
Q ss_pred --CccceeeeccCCccCCCCeEEEeeCCCCceeeecccccc------ceeEEeecC
Q 040533 273 --HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS------RILELSQSP 320 (364)
Q Consensus 273 --~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~------~i~~i~~~~ 320 (364)
.|.+|+.-.+ ||+|..||..+++.+..+....+ ..+.|.|-.
T Consensus 258 ~~sg~lLVGNFG------DG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 258 SLSGALLVGNFG------DGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEEeecC------CceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 3455554444 99999999999998887765432 346677754
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.16 E-value=0.8 Score=39.94 Aligned_cols=102 Identities=12% Similarity=0.187 Sum_probs=56.5
Q ss_pred CCceEEEEcCCCCEEEEEe-----------cCC-cEEEEecCC--cc--eeeeeecCCCcEEEEEeecCCCCEEEEeeCC
Q 040533 88 DFPTSISWSQDAKTLAVGY-----------MAS-KLQLWDAET--SK--LIRNLEGHDKRVATASWNHWNGHILTSGSQD 151 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~-----------~dg-~i~iw~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 151 (364)
..+..|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+...-.....+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4567899999998776642 223 677776432 32 2233433344567888887 77 444 4444
Q ss_pred CcEEEEEcccC-----c--ceeeeeec----ccCcEEEEEEcCCCCEEEEEe
Q 040533 152 KSIINHDVRVS-----N--NVTSRINA----HTAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 152 g~i~~~d~~~~-----~--~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~ 192 (364)
...++.|.... + .+...+.. +......+.|.|||.+.++-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 33333344321 1 11112211 134477899999998666544
No 427
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.11 E-value=0.5 Score=44.05 Aligned_cols=145 Identities=11% Similarity=0.105 Sum_probs=90.5
Q ss_pred ccEEEEEeCCeEEEEECCCCceee----eeeec----------------CCCCCceEEEEcC--CCCEEEEEecCCcEEE
Q 040533 56 NNILAIALGLELYLWKQENGEVQK----LLKVT----------------GEDDFPTSISWSQ--DAKTLAVGYMASKLQL 113 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~----~~~~~----------------~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i 113 (364)
.+++.++..+.|.||++....... ...+. .-...|+.|.... +...|+++..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 556777889999999986433211 00100 0111244443332 4468889999999999
Q ss_pred EecCC-------c----c---------eeeeeecCCCcEEEEEee--cCCCCEEEEeeCCCcEEEEEcccC--cceeeee
Q 040533 114 WDAET-------S----K---------LIRNLEGHDKRVATASWN--HWNGHILTSGSQDKSIINHDVRVS--NNVTSRI 169 (364)
Q Consensus 114 w~~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~ 169 (364)
|.+++ . + +...+. -...++.++++ . ..++||+++....|.||-.... +.....-
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEEEEEEeccccccccccc
Confidence 97631 0 0 011112 34578899998 6 7788888888888888765542 1111111
Q ss_pred ecccCcEEEEEEcCCC---C---EEEEEeCCCeEEEEeC
Q 040533 170 NAHTAEVCGLKWSNEG---N---LLASGGDDNLVHVWDH 202 (364)
Q Consensus 170 ~~~~~~v~~~~~~~~~---~---~l~~~~~d~~i~iwd~ 202 (364)
..+...|-+++|-++. . .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2356678899997743 2 7888899999999887
No 428
>PHA03098 kelch-like protein; Provisional
Probab=96.09 E-value=0.42 Score=44.09 Aligned_cols=148 Identities=11% Similarity=0.041 Sum_probs=71.3
Q ss_pred CCCEEEEEecCC------cEEEEecCCcceeee--eecCCCcEEEEEeecCCCCEEEEeeCCC-----cEEEEEcccCcc
Q 040533 98 DAKTLAVGYMAS------KLQLWDAETSKLIRN--LEGHDKRVATASWNHWNGHILTSGSQDK-----SIINHDVRVSNN 164 (364)
Q Consensus 98 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~ 164 (364)
++..++.|+.++ .+..||..+.+.... +.........+.. ++.+++.|+.++ .+..||..+..-
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 556667776542 577888877654322 1111112222333 778888888653 467788765542
Q ss_pred eeeeeec--ccCcEEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 165 VTSRINA--HTAEVCGLKWSNEGNLLASGGDD------NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 165 ~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
..... +...-.+++ .-++++.+.|+.+ ..+..||..+... ..+..+...... .+++.. ++ .+++.
T Consensus 371 --~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~-~~~~~~-~~-~iyv~ 443 (534)
T PHA03098 371 --REEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKW-SKGSPLPISHYG-GCAIYH-DG-KIYVI 443 (534)
T ss_pred --eeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCee-eecCCCCccccC-ceEEEE-CC-EEEEE
Confidence 11111 111111122 2256677777632 3578888765432 111111111111 122222 23 67777
Q ss_pred ecCCCC------CeEEEEECCCCeE
Q 040533 237 GGGTQD------GCIKIWNVQKGTC 255 (364)
Q Consensus 237 ~~g~~d------~~i~i~d~~~~~~ 255 (364)
||.... ..+.+||..+++-
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCce
Confidence 652111 2388899887654
No 429
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.06 E-value=1.5 Score=42.10 Aligned_cols=231 Identities=10% Similarity=0.045 Sum_probs=119.1
Q ss_pred CCEEEEEecCCcEEEEecCCcceeeeeecCCCc--------EEEEEeec---------------CCCCEEEEeeCCCcEE
Q 040533 99 AKTLAVGYMASKLQLWDAETSKLIRNLEGHDKR--------VATASWNH---------------WNGHILTSGSQDKSII 155 (364)
Q Consensus 99 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--------v~~~~~~~---------------~~~~~l~~~~~dg~i~ 155 (364)
+..|..++.++.|.-.|..+|+.+.++...... ...+++.. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777788899999999999988776532211 11222211 0234788888999999
Q ss_pred EEEcccCcceeeeeecccCcE-------------EEEEEcC--CCCEEEEEeC----------CCeEEEEeCCCCCCCcc
Q 040533 156 NHDVRVSNNVTSRINAHTAEV-------------CGLKWSN--EGNLLASGGD----------DNLVHVWDHSKMSSSKC 210 (364)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------d~~i~iwd~~~~~~~~~ 210 (364)
-.|.++++.+.. + +..+.+ ..+.-.| .+..+++|+. +|.|+-+|.++++.
T Consensus 274 ALDA~TGk~~W~-f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl--- 348 (764)
T TIGR03074 274 ALDADTGKLCED-F-GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL--- 348 (764)
T ss_pred EEECCCCCEEEE-e-cCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE---
Confidence 999988875432 1 111111 0111122 2335666642 68899999887643
Q ss_pred eEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCC
Q 040533 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ 290 (364)
Q Consensus 211 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 290 (364)
+-.+..-....... .+.+ .....+++ ..-...-+|.+.+....-.....+ .+....+.... . ...+
T Consensus 349 ~W~~~~g~p~~~~~--~~~g-~~~~~gg~-n~W~~~s~D~~~glvy~ptGn~~p----d~~g~~r~~~~-n-----~y~~ 414 (764)
T TIGR03074 349 VWAWDPGNPDPTAP--PAPG-ETYTRNTP-NSWSVASYDEKLGLVYLPMGNQTP----DQWGGDRTPAD-E-----KYSS 414 (764)
T ss_pred eeEEecCCCCcccC--CCCC-CEeccCCC-CccCceEEcCCCCeEEEeCCCccc----cccCCccccCc-c-----cccc
Confidence 44332110000000 0122 22222210 111334455544433221111100 01000000000 0 1156
Q ss_pred eEEEeeCCCCceeeeccccccc---------eeEEeecC-CCC---EEEEEeCCCcEEEEEeeCCCCCcce
Q 040533 291 KLCLWKYPHMTKWGELQHQTSR---------ILELSQSP-DGL---TVVSAAADETLRFWEAFGPSGSGDF 348 (364)
Q Consensus 291 ~i~i~d~~~~~~~~~~~~~~~~---------i~~i~~~~-~~~---~l~~~~~dg~i~vw~~~~~~~~~~~ 348 (364)
.|.-.|.++++..-.++..... ..-+.+.. +|+ .++.++.+|.+.+.|-++++.+...
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 7777888898888777641111 11122322 553 7899999999999999998876543
No 430
>PRK13684 Ycf48-like protein; Provisional
Probab=95.97 E-value=0.91 Score=38.95 Aligned_cols=149 Identities=11% Similarity=0.077 Sum_probs=84.6
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEE-EeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECC
Q 040533 173 TAEVCGLKWSNEGNLLASGGDDNLVHV-WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 251 (364)
...+..+.+.|++.+++++. .|.+.. +|-. ......+ .......++++.+.++++ +++.+ ..|.+++=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g~tW~~~--~~~~~~~l~~i~~~~~g~-~~~vg---~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-QTAWTPH--QRNSSRRLQSMGFQPDGN-LWMLA---RGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCC-CCeEEEe--eCCCcccceeeeEcCCCC-EEEEe---cCCEEEEccCC
Confidence 45688999999887666554 565543 2211 1111111 123346788999999885 44444 36766532334
Q ss_pred CCeEEEEEec-----CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc---cccceeEEeecCCCC
Q 040533 252 KGTCIHSVDT-----KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH---QTSRILELSQSPDGL 323 (364)
Q Consensus 252 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~i~~~~~~~ 323 (364)
.+..-..... ...+.++.+.+++..++++. +|.+. .....++....... -....+.+.|..+++
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-------~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~ 315 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG-------NGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK 315 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEEEcC-------CCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCc
Confidence 4433222221 13478889999888777763 55554 34454554444322 223577788776666
Q ss_pred EEEEEeCCCcEEEEE
Q 040533 324 TVVSAAADETLRFWE 338 (364)
Q Consensus 324 ~l~~~~~dg~i~vw~ 338 (364)
.++ .+..|.|--|+
T Consensus 316 ~~~-~G~~G~il~~~ 329 (334)
T PRK13684 316 GFV-LGQRGVLLRYV 329 (334)
T ss_pred eEE-ECCCceEEEec
Confidence 555 55678877665
No 431
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.94 E-value=0.39 Score=41.83 Aligned_cols=139 Identities=9% Similarity=0.148 Sum_probs=74.0
Q ss_pred eecccCCCccEEEEEe-------------CC-eEEEEECCC--CceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcE
Q 040533 48 SNMMDWGRNNILAIAL-------------GL-ELYLWKQEN--GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKL 111 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~-------------~~-~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 111 (364)
...++|++++.+-++. .+ .|.+++-.+ ++..+...+...-.....+++.+++ +++ +... .|
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~-~i 92 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP-DI 92 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC-eE
Confidence 4557777765333332 12 777776543 3332222332334457889999988 444 4434 45
Q ss_pred EEE-ecCCc-----ce--e-eeeec----CCCcEEEEEeecCCCCEEEEeeCC-------------------CcEEEEEc
Q 040533 112 QLW-DAETS-----KL--I-RNLEG----HDKRVATASWNHWNGHILTSGSQD-------------------KSIINHDV 159 (364)
Q Consensus 112 ~iw-~~~~~-----~~--~-~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d-------------------g~i~~~d~ 159 (364)
..+ +.... +. + ..+.. +......++|.| ++.+.++-+.. |.|..++.
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 444 44321 11 1 11221 134477899999 88776655421 34555555
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEe
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 192 (364)
.... .+.+...-.....++|+++|+++++-.
T Consensus 172 dg~~--~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGK--LRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCe--EEEEecCcCCCccceECCCCCEEEEcc
Confidence 4333 222322234457899999988776644
No 432
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.84 E-value=0.0082 Score=51.82 Aligned_cols=199 Identities=14% Similarity=0.238 Sum_probs=112.5
Q ss_pred eecccCCCcc---EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 48 SNMMDWGRNN---ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 48 ~~~~~~~~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.-.++|+.+. .+.+...+.+++||+.+....++-.-..|.... +.|++.+..++.|...|.+.|++..+.+.+..
T Consensus 77 aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv 154 (615)
T KOG2247|consen 77 ALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV 154 (615)
T ss_pred HhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhh
Confidence 3456776643 444556789999999876543332211233333 78999999999999999999999888777766
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEE--EE---EEcCCCCEEEEEeCC-CeEE
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVC--GL---KWSNEGNLLASGGDD-NLVH 198 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~--~~---~~~~~~~~l~~~~~d-~~i~ 198 (364)
.-.|..+++++++.+ . ++.+.++.|..+.+-...+...-.....+..+... ++ .|...|..+.+.-.. ..+.
T Consensus 155 ~Gkh~RRgtq~av~l-E-d~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~ 232 (615)
T KOG2247|consen 155 MGKHQRRGTQIAVTL-E-DYVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLM 232 (615)
T ss_pred hcccccceeEEEecc-c-ceeeecCcHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHH
Confidence 666999999999987 4 45556666655444333222111111111111111 11 233344444433211 1111
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
.-.+.....+..+ .++...+.+.|..|--|| +++. |..-|.|..-.+.+++.
T Consensus 233 yak~nE~D~pval-~fq~~~gni~cyrwylDg-~i~i---gf~ag~iV~iS~h~aeL 284 (615)
T KOG2247|consen 233 YAKYNELDEPVAL-QFQEKYGNIHCYRWYLDG-YILI---GFDAGYIVSISAHNAEL 284 (615)
T ss_pred HHhhcCCCCccce-EeeecCCceeEEEEeccc-cccc---cccceeEEEEeccchHH
Confidence 1122222222223 566667778889998887 3433 22456677767666544
No 433
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=95.76 E-value=1.6 Score=40.07 Aligned_cols=252 Identities=12% Similarity=0.034 Sum_probs=121.5
Q ss_pred cCCCCEEEEEecCCcEEEEecCCcc---eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc
Q 040533 96 SQDAKTLAVGYMASKLQLWDAETSK---LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH 172 (364)
Q Consensus 96 s~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 172 (364)
..++..++.+.++|.+....+.... .+..+..-.....++.+....+.+|+.|+.-|.=.++.+.............
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 4467788899999999988876543 1222221144556666664122488888876655555554332111111234
Q ss_pred cCcEEEEEEcCC----CC------EEEEEe---CCCeEEEEeCCCCCCCc-ceEEeccc--ccceeEEEEcc-CCCcEEE
Q 040533 173 TAEVCGLKWSNE----GN------LLASGG---DDNLVHVWDHSKMSSSK-CLHRFRDH--RAAVKALAWCP-YQFNVLA 235 (364)
Q Consensus 173 ~~~v~~~~~~~~----~~------~l~~~~---~d~~i~iwd~~~~~~~~-~~~~~~~~--~~~v~~~~~~~-~~~~~~~ 235 (364)
-++|..++..+. .. .|++++ .+|.+++..- +-... ........ -..++.+.... ++.++++
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeeccCCCCceEEEEeeecCCCceEEEE
Confidence 578888888531 11 455543 5678887742 11111 01111111 23344444333 1334444
Q ss_pred eecCCCCCeEEEEECC---CCeEEEEEe-----cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc
Q 040533 236 SGGGTQDGCIKIWNVQ---KGTCIHSVD-----TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~---~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 307 (364)
+- ...-+++.+. ..+.+..+. ...+-..+....++..+-+. ...|++.+....+......
T Consensus 377 S~----~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt--------~~~i~l~~~~~~~~~~~w~ 444 (504)
T PF10433_consen 377 SF----PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVT--------PKGIRLIDLEDGKLTQEWK 444 (504)
T ss_dssp EE----SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEE--------SSEEEEEESSSTSEEEEEE
T ss_pred Ec----CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEe--------cCeEEEEECCCCeEEEEEe
Confidence 43 3445555553 233332221 11222222222244444333 6778899887777766653
Q ss_pred c-cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee-----ccCCceeeeeeccC
Q 040533 308 H-QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV-----SHLDGLLSLKVSPI 363 (364)
Q Consensus 308 ~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-----~~~~~v~~~~~sp~ 363 (364)
. ....|.+.+. ++.+++.+-.++.+..+.+.......... ...+.|.|+..+|+
T Consensus 445 ~~~~~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p~ 504 (504)
T PF10433_consen 445 PPAGSIIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEPI 504 (504)
T ss_dssp -TTS---SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE----
T ss_pred CCCCCeEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCCC
Confidence 3 3345666655 44577777778999999998766542222 14678999999986
No 434
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.60 E-value=0.081 Score=29.18 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=25.8
Q ss_pred cceeEEEEccCCC--cEEEeecCCCCCeEEEEECCCC
Q 040533 219 AAVKALAWCPYQF--NVLASGGGTQDGCIKIWNVQKG 253 (364)
Q Consensus 219 ~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~ 253 (364)
+.+.++.|+|... .+|+.+- ..|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E--~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAE--HQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEc--cCCeEEEEEcccC
Confidence 3688999998664 5777654 6899999999953
No 435
>PHA02790 Kelch-like protein; Provisional
Probab=95.52 E-value=1 Score=40.89 Aligned_cols=183 Identities=10% Similarity=0.027 Sum_probs=83.1
Q ss_pred CCCEEEEeeCCC-----cEEEEEcccCccee-eeeecccCcEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCCCCcceE
Q 040533 141 NGHILTSGSQDK-----SIINHDVRVSNNVT-SRINAHTAEVCGLKWSNEGNLLASGGDD--NLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 141 ~~~~l~~~~~dg-----~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~ 212 (364)
++.+++.|+.++ .+..||..+..... ..+....... +++ .-++...+.|+.+ ..+..||...... ..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W-~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAW-VNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeE-EECC
Confidence 566777777543 46678877543211 1111111111 122 2366777777754 3577788654321 1122
Q ss_pred EecccccceeEEEEccCCCcEEEeecCCCC---CeEEEEECCCCeEEEEEecCCCe-EEEEEcCCccceeeeccCCccCC
Q 040533 213 RFRDHRAAVKALAWCPYQFNVLASGGGTQD---GCIKIWNVQKGTCIHSVDTKAQI-CGLEWNRHHKEILSGHGFSSSGD 288 (364)
Q Consensus 213 ~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d---~~i~i~d~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~~~~~~~ 288 (364)
.+.........+.. ++ .+.+.|| .+ ..+..||.++.+-...-....+. ...+..-+++..+.|
T Consensus 348 ~l~~~r~~~~~~~~--~g-~IYviGG--~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G-------- 414 (480)
T PHA02790 348 SLLKPRCNPAVASI--NN-VIYVIGG--HSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG-------- 414 (480)
T ss_pred CCCCCCcccEEEEE--CC-EEEEecC--cCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--------
Confidence 22111111112222 23 6777775 33 35778888765443221111111 111112344444443
Q ss_pred CCeEEEeeCCCCc--eeeeccccccceeEEeecCCCCEEEEEeCC-----CcEEEEEeeCC
Q 040533 289 GQKLCLWKYPHMT--KWGELQHQTSRILELSQSPDGLTVVSAAAD-----ETLRFWEAFGP 342 (364)
Q Consensus 289 ~~~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~vw~~~~~ 342 (364)
|.+.+||..+.+ .+..+.........+.+ +|++.+.||.+ ..+..||..+.
T Consensus 415 -G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 415 -RNAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred -CceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 346778876532 22222221222222232 67777888754 34666666543
No 436
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.52 E-value=0.024 Score=52.75 Aligned_cols=157 Identities=18% Similarity=0.300 Sum_probs=83.6
Q ss_pred CeEEEEECC--CCceeeeeee---cCCCCCceEEEEcC---CCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEE
Q 040533 65 LELYLWKQE--NGEVQKLLKV---TGEDDFPTSISWSQ---DAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATAS 136 (364)
Q Consensus 65 ~~i~iw~~~--~~~~~~~~~~---~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 136 (364)
|.+.||++. .|+....+.+ ......+.-+.|.| +.-++..+..++.|++....+... ..+.+|...+..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 678888865 3433222221 12233445555655 556777888888888877654433 44556888887777
Q ss_pred eecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CCCCcceEEe
Q 040533 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK--MSSSKCLHRF 214 (364)
Q Consensus 137 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~ 214 (364)
|.. .+-+.+.+ .+|||..++++..||.++.|.+.- .....+++..
T Consensus 232 ~~~-~g~~~l~~--------------------------------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhew 278 (1283)
T KOG1916|consen 232 FFA-EGVLKLAS--------------------------------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEW 278 (1283)
T ss_pred HHh-hchhhhee--------------------------------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhcc
Confidence 754 22211111 567777777777777777665432 1122344455
Q ss_pred ccccc-ceeEEEEccC-------CCc-EEEeecCCCCCeEEEEECCCCeEE
Q 040533 215 RDHRA-AVKALAWCPY-------QFN-VLASGGGTQDGCIKIWNVQKGTCI 256 (364)
Q Consensus 215 ~~~~~-~v~~~~~~~~-------~~~-~~~~~~g~~d~~i~i~d~~~~~~~ 256 (364)
+.|.+ +-.|.-++.+ +.+ +++++ ......+++|.....+|+
T Consensus 279 kphd~~p~vC~lc~~~~~~~v~i~~w~~~Itt-td~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 279 KPHDKHPRVCWLCHKQEILVVSIGKWVLRITT-TDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCCCCceeeeeccccccCCccceeEEEEec-ccCCcceeEeeccchhhh
Confidence 55542 2222112211 111 22232 235567888887766665
No 437
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.48 E-value=1.5 Score=41.12 Aligned_cols=107 Identities=11% Similarity=0.129 Sum_probs=69.2
Q ss_pred CCCEEEEeeCCCcEEEEEcccCc-----------c--------eeeeeecccCcEEEEEEc--CCCCEEEEEeCCCeEEE
Q 040533 141 NGHILTSGSQDKSIINHDVRVSN-----------N--------VTSRINAHTAEVCGLKWS--NEGNLLASGGDDNLVHV 199 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~-----------~--------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i 199 (364)
+.+.|+.+..||.|.+|..+.-- . +...+ .-...+++++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 56789999999999999763100 0 01111 223578899998 78889999998888888
Q ss_pred EeCCCCCCCcceEEecccccceeEEEEccCC--Cc---EEEeecCCCCCeEEEEEC
Q 040533 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ--FN---VLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 200 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~---~~~~~~g~~d~~i~i~d~ 250 (364)
|-+...........-..+...|.+|+|-++. .. .+++++ -.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d--I~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD--ISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe--ccCcEEEEEE
Confidence 8655422111111111256678899997654 12 444444 7899988887
No 438
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.39 E-value=0.98 Score=35.28 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=65.8
Q ss_pred CEEEEeeCCCcEEEEEcccCc-ceeeeeecccCcEEEEEEcCCCCEEEEEeCCC------eEEEE---eCCCCCCCcceE
Q 040533 143 HILTSGSQDKSIINHDVRVSN-NVTSRINAHTAEVCGLKWSNEGNLLASGGDDN------LVHVW---DHSKMSSSKCLH 212 (364)
Q Consensus 143 ~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iw---d~~~~~~~~~~~ 212 (364)
+.|+.+...+.|.+|++.... .+...+. --+.|..+.++..|+++++--.+. .+++| +...........
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 555555677789999998443 3333443 347899999999999999864332 45554 322111111111
Q ss_pred Eecc---------------------cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe
Q 040533 213 RFRD---------------------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254 (364)
Q Consensus 213 ~~~~---------------------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 254 (364)
.+.+ -..++.+++-+|-...+++. .++.+.+|.+....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg----~~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG----CGNKLVLFTLKYQT 166 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE----cCCEEEEEEEEEEE
Confidence 1111 13456788888877677774 37889999886543
No 439
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.38 E-value=0.094 Score=28.93 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=26.2
Q ss_pred CCceEEEEcCCC---CEEEEEecCCcEEEEecCCc
Q 040533 88 DFPTSISWSQDA---KTLAVGYMASKLQLWDAETS 119 (364)
Q Consensus 88 ~~v~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~ 119 (364)
+.|.++.|||+. ++|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 368899999844 58888888899999999853
No 440
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=1.7 Score=37.89 Aligned_cols=155 Identities=14% Similarity=0.204 Sum_probs=92.1
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEecCCcc---eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc---e
Q 040533 92 SISWSQDAKTLAVGYMASKLQLWDAETSK---LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN---V 165 (364)
Q Consensus 92 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~ 165 (364)
.+-|. |.+..+.+...|.+.=|-+.... .+..-....++|.++.|++ |.+.||+--.+++|.+++....+. .
T Consensus 27 gvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 27 GVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred ceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHH
Confidence 34343 33333333345556666554221 1222223567999999999 999999999999999999843332 2
Q ss_pred eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeE
Q 040533 166 TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 245 (364)
....+..+..|....|+.+ .-+|.....| +-+|.+... .+.++..+.+...|.-..|+++..-++.+.+ -..+++
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe--krslRlVks~~~nvnWy~yc~et~v~LL~t~-~~~n~l 179 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE--KRSLRLVKSHNLNVNWYMYCPETAVILLSTT-VLENVL 179 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh--hhhhhhhhhcccCccEEEEccccceEeeecc-cccccc
Confidence 2233344556899999876 4566665555 666654432 2335555667778888889988755544432 133444
Q ss_pred EEEECCCC
Q 040533 246 KIWNVQKG 253 (364)
Q Consensus 246 ~i~d~~~~ 253 (364)
.=+-++++
T Consensus 180 npf~~~~~ 187 (657)
T KOG2377|consen 180 NPFHFRAG 187 (657)
T ss_pred ccEEEeec
Confidence 44444443
No 441
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=1.1 Score=41.44 Aligned_cols=185 Identities=14% Similarity=0.118 Sum_probs=91.0
Q ss_pred CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCC
Q 040533 152 KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF 231 (364)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 231 (364)
-.|+||+.. +.. +.........+..+.|+.+. .|++...+|++++|++-.......-.........|..+.+...|
T Consensus 64 ~~I~If~~s-G~l-L~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G- 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQL-LGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG- 139 (829)
T ss_pred eeEEEEecc-ccc-hHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc-
Confidence 357888865 433 33333334478899999876 46667789999999975321111000011223345555555555
Q ss_pred cEEEeecCCCCCeEEEEECCCCeEEEEEec-C-CCe--EEEEEcCCccc--eeeeccCCccCCCCeEEEeeCCC-Cceee
Q 040533 232 NVLASGGGTQDGCIKIWNVQKGTCIHSVDT-K-AQI--CGLEWNRHHKE--ILSGHGFSSSGDGQKLCLWKYPH-MTKWG 304 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~-~~v--~~~~~~~~~~~--l~~~~~~~~~~~~~~i~i~d~~~-~~~~~ 304 (364)
-.+.+ .+|.+.+-+-.....+..+.. + ... .+-...+++.. ++..-... .+ ..++.... .....
T Consensus 140 Vavlt----~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~----v~-~~~~q~~~~~~q~~ 210 (829)
T KOG2280|consen 140 VAVLT----VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVA----VG-LHICQVEESRVQLH 210 (829)
T ss_pred eEEEe----cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechh----hh-hcccceeccccccc
Confidence 33333 355555544322222233221 1 111 22222222111 11100000 00 00111111 11112
Q ss_pred eccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 305 ELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 305 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
.+....+.+..+..||+.++|+--..+|.|.+-..+..+....+.
T Consensus 211 ~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 211 ALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 222234568889999999999999999999998877666554443
No 442
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=95.16 E-value=0.17 Score=38.60 Aligned_cols=29 Identities=21% Similarity=0.443 Sum_probs=24.4
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECCCC
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQENG 75 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~ 75 (364)
+..+++||.++.+|++.+..|.|.+..+.
T Consensus 6 ~~~~l~WS~Dg~laV~t~~~v~IL~~~~P 34 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVATGESVHILDPQTP 34 (173)
T ss_pred CCcCeeECCCCCEEEEcCCeEEEEeccCC
Confidence 35789999999999999999999955443
No 443
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=95.15 E-value=1.7 Score=36.66 Aligned_cols=232 Identities=11% Similarity=-0.006 Sum_probs=114.5
Q ss_pred EEEEEeCCeEEEEECCC--CceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcce-------------
Q 040533 58 ILAIALGLELYLWKQEN--GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKL------------- 121 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~------------- 121 (364)
.+..|.+..+++.+..+ ++..++ .+...|+++...+.-+.|++-+ ....++.+++..-..
T Consensus 15 ~lL~GTe~Gly~~~~~~~~~~~~kl----~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 15 WLLVGTEEGLYVLNISDQPGTLEKL----IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred EEEEEeCCceEEEEcccCCCCeEEe----cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 56666666677777664 333333 3466899999998887776654 333499999843221
Q ss_pred --eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee-------cccCcEEEEEEcCC--CCEEEE
Q 040533 122 --IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN-------AHTAEVCGLKWSNE--GNLLAS 190 (364)
Q Consensus 122 --~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~--~~~l~~ 190 (364)
....-.+................++++....+|.++............. ....++..+..+++ ...++.
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv 170 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI 170 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence 0111123333333333321222334444455666664432211011111 11223334433432 456777
Q ss_pred EeCCCeEEEEeCCC--CCCCcceEE--ecccc-cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE--EEEecCC
Q 040533 191 GGDDNLVHVWDHSK--MSSSKCLHR--FRDHR-AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI--HSVDTKA 263 (364)
Q Consensus 191 ~~~d~~i~iwd~~~--~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~~~ 263 (364)
|+..+...++++.. ......... ..... .++..... +++ .++.+ .|....+.|....+.. ..+.-..
T Consensus 171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~-e~Llc----~~~~~v~Vn~~G~~~~r~~~l~w~~ 244 (302)
T smart00036 171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRD-EFLLC----YDEFGVFVNLYGKRRSRNPILHWEF 244 (302)
T ss_pred EEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCC-eEEEE----ECcEEEEEeCCCCccccceEEEcCC
Confidence 77642234444422 111000000 01111 33333333 344 34443 4667777777531222 2333345
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
...++++.. .++++-. ++.|.++++.+++.+.++..
T Consensus 245 ~p~~~~~~~--pyll~~~-------~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 245 MPESFAYHS--PYLLAFH-------DNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred cccEEEEEC--CEEEEEc-------CCcEEEEECCCCceEEEEec
Confidence 566777763 5555443 77899999999988877753
No 444
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.14 E-value=0.79 Score=32.75 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=67.1
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEecCCcc--------eeeeeecCCCcEEEEEeecC----CCCEEEEeeCCCcEEEEEc
Q 040533 92 SISWSQDAKTLAVGYMASKLQLWDAETSK--------LIRNLEGHDKRVATASWNHW----NGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 92 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~~~d~ 159 (364)
.-.|......|++++..|+|.|++..... .+..+. -...|++++--+- ..+.|+.|+. ..+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 34566666789999999999999876432 334444 4566777765431 3567777765 47899999
Q ss_pred ccCcceeeeeecccCcEEEEEEcC----CCCEEEEEeCCCeEEEEeCC
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSN----EGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~ 203 (364)
.....+ .++.-.+.|+++.+-. +..++++|+ ...|.-||..
T Consensus 81 ~~N~d~--Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~ 125 (136)
T PF14781_consen 81 ENNSDL--FYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYE 125 (136)
T ss_pred ccCchh--hhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCC
Confidence 866532 2334456777777643 234455444 5566666643
No 445
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.03 E-value=0.85 Score=32.57 Aligned_cols=112 Identities=11% Similarity=0.105 Sum_probs=69.0
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCC-----CCcceEEecccccceeEEEEcc----CCCcEEEeecCCCCCeEEEEE
Q 040533 179 LKWSNEGNLLASGGDDNLVHVWDHSKMS-----SSKCLHRFRDHRAAVKALAWCP----YQFNVLASGGGTQDGCIKIWN 249 (364)
Q Consensus 179 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~g~~d~~i~i~d 249 (364)
-.|......|++++.-|+|.|++..... ....+..+. -+..|++++--+ ++..+|+.|+ ...+..||
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt---~t~llaYD 79 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT---QTSLLAYD 79 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec---cceEEEEE
Confidence 3565666678888889999999865432 112233332 355677776443 3456777774 78899999
Q ss_pred CCCCeEEEEEecCCCeEEEEEcC----CccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 250 VQKGTCIHSVDTKAQICGLEWNR----HHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 250 ~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
......+...+.+..+.++.+-. ..+.+++|. +..|.-||..-.+
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-------ncsi~Gfd~~G~e 128 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-------NCSIQGFDYEGNE 128 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECc-------eEEEEEeCCCCcE
Confidence 99887766656666677766532 234444443 5556666654433
No 446
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.97 E-value=0.045 Score=51.10 Aligned_cols=138 Identities=17% Similarity=0.182 Sum_probs=77.7
Q ss_pred CCcEEEEecCCcc-eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc------ceeeeeecccCcEEEEE
Q 040533 108 ASKLQLWDAETSK-LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN------NVTSRINAHTAEVCGLK 180 (364)
Q Consensus 108 dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------~~~~~~~~~~~~v~~~~ 180 (364)
.+-+++-+..+.- .-..+++..+.|..+.|-..+...+. -.-|.+.+||+..-+ ..+.........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 4557777655432 12334566778888888543333333 344678899876422 11222222333445555
Q ss_pred EcC---CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC
Q 040533 181 WSN---EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253 (364)
Q Consensus 181 ~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 253 (364)
|.| +.-++..+-.++.+++....... ...+.+|...+..++|-..|-.++..-+ -||++..|-...|
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~----~~l~rsHs~~~~d~a~~~~g~~~l~~lS--pDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRAL----RSLFRSHSQRVTDMAFFAEGVLKLASLS--PDGTVFAWAISDG 257 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHH----HHHHHhcCCCcccHHHHhhchhhheeeC--CCCcEEEEeecCC
Confidence 555 55677788888888887765432 2344568777777777665533333322 5555555554443
No 447
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.89 E-value=0.22 Score=27.37 Aligned_cols=41 Identities=7% Similarity=0.167 Sum_probs=30.8
Q ss_pred cCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEE
Q 040533 228 PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEW 270 (364)
Q Consensus 228 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~ 270 (364)
|+++.++++.. .+++|.++|..+++.+..+........+.+
T Consensus 1 pd~~~lyv~~~--~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNS--GSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeC--CCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 56767777764 689999999999998888876554555554
No 448
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.68 E-value=4.4 Score=39.03 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=64.9
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCC------CceEEEEc----------------CCCCEEEEEecCCcEEE
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDD------FPTSISWS----------------QDAKTLAVGYMASKLQL 113 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~------~v~~~~~s----------------~~~~~l~~~~~dg~i~i 113 (364)
+.++.++.++.|+-.|..+|+..=.+....... ....+++. ..+..++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 345666667889999999887643333221111 01122221 13447888889999999
Q ss_pred EecCCcceeeeeecCCCcEE-------------EEEeecC-CCCEEEEeeC----------CCcEEEEEcccCcceee
Q 040533 114 WDAETSKLIRNLEGHDKRVA-------------TASWNHW-NGHILTSGSQ----------DKSIINHDVRVSNNVTS 167 (364)
Q Consensus 114 w~~~~~~~~~~~~~~~~~v~-------------~~~~~~~-~~~~l~~~~~----------dg~i~~~d~~~~~~~~~ 167 (364)
.|.++|+....+.. ++.|. .+.-.|. .+..++.|+. +|.|+-+|.++++..-.
T Consensus 275 LDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 275 LDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 99999998876642 22110 0000110 2345555542 68899999998875433
No 449
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.59 E-value=2.2 Score=40.58 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=24.8
Q ss_pred ccceeEEeecCC---CCEEEEEeCCCcEEEEEeeCCC
Q 040533 310 TSRILELSQSPD---GLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 310 ~~~i~~i~~~~~---~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
...|..+.|+|. +..|+.-..|+++|+||+....
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 346777888875 4677777888888888886543
No 450
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.59 E-value=0.0041 Score=53.55 Aligned_cols=144 Identities=15% Similarity=0.284 Sum_probs=99.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe
Q 040533 175 EVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT 254 (364)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 254 (364)
......|-+.+.-++.++.+..+..||-.. +..... ..++....++|+.+++.+++.+. ..+.+.+||+.+..
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~ag----q~~le~-n~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~ey 108 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAG----QVILEL-NPTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNSEY 108 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhc----ceeccc-CCchhHhhhhhccccchhhhhhh--cCCCeeechhhhhh
Confidence 344567788776688888888888898332 222222 23455667889888877777765 78999999997642
Q ss_pred EEEEEe--cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCC
Q 040533 255 CIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE 332 (364)
Q Consensus 255 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 332 (364)
. .+++ ....-.-+.|++.+..++.+.. .+.+.|++..+.+.+...-.|...++++++.+.+. .+.++.|.
T Consensus 109 t-qqLE~gg~~s~sll~wsKg~~el~ig~~------~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 109 T-QQLESGGTSSKSLLAWSKGTPELVIGNN------AGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred H-HHHhccCcchHHHHhhccCCcccccccc------ccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHH
Confidence 1 1222 1222233789999998888854 89999999988887777766889999999998774 44444443
Q ss_pred c
Q 040533 333 T 333 (364)
Q Consensus 333 ~ 333 (364)
.
T Consensus 181 ~ 181 (615)
T KOG2247|consen 181 T 181 (615)
T ss_pred H
Confidence 3
No 451
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.47 E-value=1.8 Score=33.81 Aligned_cols=142 Identities=12% Similarity=0.113 Sum_probs=81.3
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC---eEEEEE---CC--CCeEEE-
Q 040533 187 LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG---CIKIWN---VQ--KGTCIH- 257 (364)
Q Consensus 187 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~---~i~i~d---~~--~~~~~~- 257 (364)
.|+.+...+.|.+|++.. +..+.+..+.. -+.|..+.++..|+++++.-...... .+|+|- .. ...++.
T Consensus 30 ~Lfva~~g~~Vev~~l~~-~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQ-EECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred eEEEEcCCCEEEEEEccc-CCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 444446677899999983 33455666654 47899999999998877764311223 566652 11 111111
Q ss_pred ----------------------EEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-ee-----ecc--
Q 040533 258 ----------------------SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-WG-----ELQ-- 307 (364)
Q Consensus 258 ----------------------~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~-----~~~-- 307 (364)
.+....++.+++-.|-...|+.|. ++.+.+|.+..... .. .+.
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-------~~~l~lf~l~~~~~~~~~~~~lDFe~~ 180 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-------GNKLVLFTLKYQTIQSEKFSFLDFERS 180 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-------CCEEEEEEEEEEEEecccccEEechhh
Confidence 112234566777777555555554 88999998754332 11 111
Q ss_pred ---cccc-ceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 308 ---HQTS-RILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 308 ---~~~~-~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
.|.+ ....+++. +.|+|..+. -.+++..+.
T Consensus 181 l~~~~~~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl~ 214 (215)
T PF14761_consen 181 LIDHIDNFKPTQVAIC--EGYIAVMSD-LEVLVLKLE 214 (215)
T ss_pred hhheecCceEEEEEEE--eeEEEEecC-CEEEEEEEe
Confidence 1111 24556663 457777664 467777654
No 452
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.45 E-value=0.5 Score=37.64 Aligned_cols=62 Identities=10% Similarity=0.162 Sum_probs=45.6
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcceeee------ee-------cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 141 NGHILTSGSQDKSIINHDVRVSNNVTSR------IN-------AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
++++|++.+.+|.+++||+.+.+..... +. .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 7889999999999999999877643222 21 2446678888888887666655 5778888854
No 453
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.31 E-value=3.5 Score=36.38 Aligned_cols=271 Identities=11% Similarity=0.076 Sum_probs=144.4
Q ss_pred ccEEEEEeCCeEEEEECCCCcee--eeeeecCCCCCceEEEEcC-----CCCEEEEEecCCcEEEEecCC--cc------
Q 040533 56 NNILAIALGLELYLWKQENGEVQ--KLLKVTGEDDFPTSISWSQ-----DAKTLAVGYMASKLQLWDAET--SK------ 120 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~--~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~iw~~~~--~~------ 120 (364)
+.++.++..|.++||+...++.. .+.--..-+.+|..+..-+ +...||+- .-..+.||.+.. |.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCcccCcE
Confidence 45788888999999998765432 1221123467787777643 23455554 466788888731 11
Q ss_pred -eeeeeecCC--CcEEEEEeecC----CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC
Q 040533 121 -LIRNLEGHD--KRVATASWNHW----NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD 193 (364)
Q Consensus 121 -~~~~~~~~~--~~v~~~~~~~~----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 193 (364)
.+..+..|. .....++.-|- ..+++++-+-||.+.+|+-+.-. ....+.. ---.-.+.|.+....|++++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-FSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-EEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 122222232 22233333221 24788899999999999955322 1222222 112234677787778999998
Q ss_pred CCeEEEEeCCCCCCC--------------------cceEEecccccce---eEEEEccCCCcEEEeecCCCCCeEEEEEC
Q 040533 194 DNLVHVWDHSKMSSS--------------------KCLHRFRDHRAAV---KALAWCPYQFNVLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 194 d~~i~iwd~~~~~~~--------------------~~~~~~~~~~~~v---~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 250 (364)
+..+..|........ .+..++. -...+ ..+.++.....+++.| ...+.+.+.
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg----er~Lf~l~~ 269 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG----ERSLFCLKD 269 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe----cceEEEEcC
Confidence 888988875321110 0000111 11223 3333443444566654 577888776
Q ss_pred CCCeEEEEEecCCCeEEEE-E------cCCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeeccccccce--eEEeecC
Q 040533 251 QKGTCIHSVDTKAQICGLE-W------NRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI--LELSQSP 320 (364)
Q Consensus 251 ~~~~~~~~~~~~~~v~~~~-~------~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--~~i~~~~ 320 (364)
+|......+.+....++. + .+... .++.+ +.++.+.||.=. +.+...+....+| .-..|..
T Consensus 270 -~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~------t~t~~LlVy~d~--~L~WsA~l~~~PVal~v~~~~~ 340 (418)
T PF14727_consen 270 -NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVG------THTGTLLVYEDT--TLVWSAQLPHVPVALSVANFNG 340 (418)
T ss_pred -CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEE------ecCCeEEEEeCC--eEEEecCCCCCCEEEEecccCC
Confidence 566665555543333322 1 12211 23444 238889888633 3333322222332 2222333
Q ss_pred CCCEEEEEeCCCcEEEEEeeCCC
Q 040533 321 DGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 321 ~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
-...|++-+.+|.+.+-=+-+..
T Consensus 341 ~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 341 LKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred CCceEEEEcCCCcEEEEEeCCCC
Confidence 34478888999999887665543
No 454
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.27 E-value=5.6 Score=38.60 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=73.3
Q ss_pred CcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC--CCCCcceEEecccc----------cceeEEEEccCCCcEEEeecCC
Q 040533 174 AEVCGLKWSN-EGNLLASGGDDNLVHVWDHSK--MSSSKCLHRFRDHR----------AAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 174 ~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
.+...++|+| +...||+....|...|||+.. .............. +.-..+.|.++...++++
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~---- 221 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC---- 221 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE----
Confidence 4667899999 566999999999999999921 11111111111111 223478898887677776
Q ss_pred CCCeEEEEECCCCeEEE-E--EecCCCeEEEEEcCC--ccceeeeccCCccCCCCeEEEeeCCC
Q 040533 241 QDGCIKIWNVQKGTCIH-S--VDTKAQICGLEWNRH--HKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~-~--~~~~~~v~~~~~~~~--~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
....+.++|+.+..... . ......|..+.-+|. +..++.. ...|...++..
T Consensus 222 ~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--------s~eiiw~~~~~ 277 (765)
T PF10214_consen 222 NRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--------SKEIIWLDVKS 277 (765)
T ss_pred cCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--------cCeEEEEEccC
Confidence 36789999999876533 2 223366888888887 3333333 56777777765
No 455
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.03 E-value=4 Score=36.02 Aligned_cols=144 Identities=9% Similarity=0.176 Sum_probs=79.1
Q ss_pred CCEEEEEecCCcEEEEecCCcc-----eeeeeecCCCcEEEEEee---cCCCCEEEEeeCCCcEEEEEcccCcc------
Q 040533 99 AKTLAVGYMASKLQLWDAETSK-----LIRNLEGHDKRVATASWN---HWNGHILTSGSQDKSIINHDVRVSNN------ 164 (364)
Q Consensus 99 ~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~~~d~~~~~~------ 164 (364)
...+++|+..|.++||+...+. .+-..+ -..+|..+..- +......++.-.-..+.+|.+.....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 4689999999999999985543 122222 34677777642 21232233334456777887743221
Q ss_pred --eeeeeeccc--CcEEEEEEcC----C-CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 165 --VTSRINAHT--AEVCGLKWSN----E-GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 165 --~~~~~~~~~--~~v~~~~~~~----~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
.+.....|. .....++.-| . ..++++-+.||.+.+|+-+.. .....+.. ---...+.+.+....+++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~---~f~~~lp~-~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF---AFSRFLPD-FLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE---EEEEEcCC-CCCCcCeEEeecCCEEEE
Confidence 122222332 2233344433 2 358889999999999994432 11122211 122234677776655555
Q ss_pred eecCCCCCeEEEEEC
Q 040533 236 SGGGTQDGCIKIWNV 250 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~ 250 (364)
+. .+..+..|..
T Consensus 192 ~s---ss~~l~~Yky 203 (418)
T PF14727_consen 192 AS---SSWTLECYKY 203 (418)
T ss_pred ec---CceeEEEecH
Confidence 43 4677777764
No 456
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=2.3 Score=33.05 Aligned_cols=171 Identities=15% Similarity=0.180 Sum_probs=81.2
Q ss_pred CCCEEEEeeCCC--cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCCCcceEEeccc
Q 040533 141 NGHILTSGSQDK--SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL-ASGGDDNLVHVWDHSKMSSSKCLHRFRDH 217 (364)
Q Consensus 141 ~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 217 (364)
++.++.+.+.-| .|++||+.+++......-. ...+..=-...-+..+ .-.-.+|.-..+|.++.+. +..+. .
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~---lg~~~-y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE---LGRFS-Y 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhh---hcccc-c
Confidence 566676666443 6999999977643322111 1111111111112222 2234677788888665432 33332 2
Q ss_pred ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe---cC---CCeEEEEEcCCccceeeeccCCccCCCCe
Q 040533 218 RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD---TK---AQICGLEWNRHHKEILSGHGFSSSGDGQK 291 (364)
Q Consensus 218 ~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~---~~---~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 291 (364)
++.=+.++. ++..++.+.+ ..+++.-|.++.....++. .. ..++.+.|- +|...+-... ...
T Consensus 130 ~GeGWgLt~--d~~~LimsdG---satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~------t~~ 197 (262)
T COG3823 130 EGEGWGLTS--DDKNLIMSDG---SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQ------TTR 197 (262)
T ss_pred CCcceeeec--CCcceEeeCC---ceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeee------ecc
Confidence 333344443 5556777543 4556666665543333321 11 122333332 1222111111 334
Q ss_pred EEEeeCCCCceeeecc------------ccccceeEEeecCCC-CEEEEE
Q 040533 292 LCLWKYPHMTKWGELQ------------HQTSRILELSQSPDG-LTVVSA 328 (364)
Q Consensus 292 i~i~d~~~~~~~~~~~------------~~~~~i~~i~~~~~~-~~l~~~ 328 (364)
|...+..+|+.+..+. .+..-.+.|++.|++ +++++|
T Consensus 198 I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 198 IARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 4444555555443322 244567789999987 455555
No 457
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.90 E-value=4.8 Score=36.41 Aligned_cols=271 Identities=14% Similarity=0.070 Sum_probs=133.1
Q ss_pred CcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 44 NDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
.+..+.++-++-++.+=++.+..+..||..+++..+.... ....+|..+..+-.| .|.+|+.+| |.+.+.+..+...
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalql~s~-~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQLASP-PLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred cCccceeeeeeccCcEEEecCCcceEEccccceEEEcCCC-cchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 3444566666666666666677788888888876544332 223566666666555 477787666 7888766533222
Q ss_pred eeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc--cCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 124 NLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH--TAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 124 ~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
.... ..+.|..+.-. ....+-.|+..|..+. ............+.| -+.|.++....+|. |-+++.++.+++-
T Consensus 240 ~~~~lp~~~I~ll~qD--~qG~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~ 315 (671)
T COG3292 240 WGPMLPSGNILLLVQD--AQGELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYL 315 (671)
T ss_pred cCCCCcchheeeeecc--cCCCEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEe
Confidence 1111 22334433332 2334555666664432 222121111111111 24456666666664 5666667666654
Q ss_pred eCCCCCCCcceEEeccccc-ceeEEEEcc--CCCcEEEeecCCCCCeEEEEECCCCeEEEEEec--CCCeEEEEEcCCcc
Q 040533 201 DHSKMSSSKCLHRFRDHRA-AVKALAWCP--YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT--KAQICGLEWNRHHK 275 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~ 275 (364)
+-.- .....+....+ .+...+..| .+..+... ...|.+.+-+-.++..++.... +..|+.+++..++.
T Consensus 316 ~a~w----~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~---ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~ 388 (671)
T COG3292 316 TADW----KRMAVINDSDGGVSQYEAVAPALLSWGVRQL---NSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGR 388 (671)
T ss_pred cchh----hheeeeecCCCchhhhhccCchhcccceeec---cccceEEEecCCCCcEEEEeeeccccccchhhhccCCc
Confidence 4211 11111111111 111111122 11111111 1233444445555655554321 24466666666555
Q ss_pred ceeeeccCCccCCCCeEEEeeCCC-Cceeeeccc-cccceeEEeecCCCCEEEEEeCCCcEEE
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPH-MTKWGELQH-QTSRILELSQSPDGLTVVSAAADETLRF 336 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~v 336 (364)
.-+... .+-+..|+.++ +-.+.+..+ ..++|..+.=.|+++ |..|+.+|.++.
T Consensus 389 lWlgs~-------q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 389 LWLGSM-------QNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EEEEec-------ccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 544332 44555566555 333333322 346788888889988 777888886654
No 458
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.86 E-value=4.3 Score=35.72 Aligned_cols=146 Identities=11% Similarity=0.166 Sum_probs=79.7
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcce-eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCc--
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNV-TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSK-- 209 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-- 209 (364)
..+..++ ++.+++.+.....++-||- +... ..........+..+.|.+++..++++ ..|.+.. ....+....
T Consensus 242 ~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~ 316 (398)
T PLN00033 242 STVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF 316 (398)
T ss_pred eeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence 3344555 6666666554433333442 2211 11222334568899999998877665 5665543 222221110
Q ss_pred ceEEecc--cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe----cCCCeEEEEEcCCccceeeeccC
Q 040533 210 CLHRFRD--HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD----TKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 210 ~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
....... ....+.++.|.+++ .++++| ..|.+.... ..|+.-.... .....+.+.|.++++.+++|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~-~~~a~G---~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-- 389 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKK-EAWAAG---GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-- 389 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCC-cEEEEE---CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeC--
Confidence 1222211 12347889998876 567766 477666553 4444433322 235688999988888888764
Q ss_pred CccCCCCeEEEe
Q 040533 284 SSSGDGQKLCLW 295 (364)
Q Consensus 284 ~~~~~~~~i~i~ 295 (364)
+|.|.-|
T Consensus 390 -----~G~il~~ 396 (398)
T PLN00033 390 -----DGVLLRY 396 (398)
T ss_pred -----CcEEEEe
Confidence 6666544
No 459
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.71 E-value=2.1 Score=38.00 Aligned_cols=135 Identities=14% Similarity=0.149 Sum_probs=82.9
Q ss_pred EeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCC-------EEEEEecCCcEEEEecC-CcceeeeeecCCCcEE
Q 040533 62 ALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAK-------TLAVGYMASKLQLWDAE-TSKLIRNLEGHDKRVA 133 (364)
Q Consensus 62 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~ 133 (364)
+....++-.|++.|+++....+ |.+ | -+.|.|+.+ .-++|-.+..|.-.|.+ .|..+...+ ....++
T Consensus 487 ~~~~kLykmDIErGkvveeW~~--~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~t 561 (776)
T COG5167 487 GERDKLYKMDIERGKVVEEWDL--KDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKT 561 (776)
T ss_pred CCcccceeeecccceeeeEeec--CCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhccc
Confidence 3445777778888887655543 232 3 567777432 23345556566555643 232222222 112222
Q ss_pred EEEeec---CCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 134 TASWNH---WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 134 ~~~~~~---~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.-.|+. +...++++++..|-|++||-- +......+.+....|..+..+.+|+++++.+ ...+.+-|++
T Consensus 562 Kn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 562 KNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred cccccccccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 222221 156789999999999999954 3333556677788899999999999877666 4567787765
No 460
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.58 E-value=1 Score=34.42 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=24.9
Q ss_pred CcEEEEEEcCCC------CEEEEEeCCCeEEEEeCC
Q 040533 174 AEVCGLKWSNEG------NLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 174 ~~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~ 203 (364)
..+..++|||.| .+|++.+.++.|.+|.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 378999999954 488999999999999744
No 461
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.49 E-value=0.76 Score=36.60 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=43.3
Q ss_pred EcCCCCEEEEEecCCcEEEEecCCcceeeee-------e-------cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNL-------E-------GHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 95 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
+..++++|++-+.+|.+++||+.+++.+..- . .....|..+..+. +|.-+++-+ +|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEeccc
Confidence 4457889999999999999999988764321 1 2345566666665 665555543 4566777654
No 462
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=93.48 E-value=4.2 Score=34.38 Aligned_cols=234 Identities=9% Similarity=-0.055 Sum_probs=109.9
Q ss_pred CCCEEEEEecCCcEEEEecCC--cceeeeeecCCCcEEEEEeecCCCCEEEE-eeCCCcEEEEEcccCcc----------
Q 040533 98 DAKTLAVGYMASKLQLWDAET--SKLIRNLEGHDKRVATASWNHWNGHILTS-GSQDKSIINHDVRVSNN---------- 164 (364)
Q Consensus 98 ~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~---------- 164 (364)
++++|+.|+++| +.+.++.. ++..+.+ +..+|+++...+ ..+.|++ ++....++.+++..-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~-~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~ 87 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLE-ENNVLLMISGKKPQLYSHPLSALVEKKEALGSARL 87 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEh-hhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccc
Confidence 336899999988 45555554 2333332 466899999998 5555544 44455699999853321
Q ss_pred ----eeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCC-CCcceEEe---c-ccccceeEEEEccCC-CcE
Q 040533 165 ----VTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMS-SSKCLHRF---R-DHRAAVKALAWCPYQ-FNV 233 (364)
Q Consensus 165 ----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~---~-~~~~~v~~~~~~~~~-~~~ 233 (364)
.......+......+...... ..++++....+|.++...... .......+ . ....++..+..+++. ...
T Consensus 88 ~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T smart00036 88 VIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPG 167 (302)
T ss_pred cccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceE
Confidence 001111333333333333221 233444455667776443221 11111110 0 011233333333321 223
Q ss_pred EEeecCCCCCeEEEEECCC--CeEEE----E-EecCC-CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCcee--
Q 040533 234 LASGGGTQDGCIKIWNVQK--GTCIH----S-VDTKA-QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW-- 303 (364)
Q Consensus 234 ~~~~~g~~d~~i~i~d~~~--~~~~~----~-~~~~~-~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~-- 303 (364)
+..|. ..+-..++++.. ..... . ..... ...++..-+++.++++- +....+-|....+..
T Consensus 168 lcvG~--~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~--------~~~~v~Vn~~G~~~~r~ 237 (302)
T smart00036 168 ICIGS--DKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCY--------DEFGVFVNLYGKRRSRN 237 (302)
T ss_pred EEEEE--cCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEE--------CcEEEEEeCCCCccccc
Confidence 44443 222344444422 11000 0 00111 23333333445666554 555555565431111
Q ss_pred eeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 304 GELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 304 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
..+.. .....++++. ..+|+.-+. ..|.|+++.+++.++.+.
T Consensus 238 ~~l~w-~~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 238 PILHW-EFMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELA 279 (302)
T ss_pred eEEEc-CCcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEe
Confidence 12222 2345677775 357776654 459999999988776664
No 463
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.37 E-value=0.38 Score=41.67 Aligned_cols=170 Identities=14% Similarity=0.067 Sum_probs=93.3
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc-cC----cEE-EEEEcCCCCEEEEEeCCCeEE
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH-TA----EVC-GLKWSNEGNLLASGGDDNLVH 198 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~----~v~-~~~~~~~~~~l~~~~~d~~i~ 198 (364)
+......|..+-..| +++.+..-+. .++.++++.+..-..+.+... .+ .|+ .+..-..|.-+.+++.||-|.
T Consensus 216 L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 216 LSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred cCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence 444456677788889 8988777655 678888887554222221111 11 111 111223456788888999887
Q ss_pred EE-eCCCCCCCc--ceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCcc
Q 040533 199 VW-DHSKMSSSK--CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHK 275 (364)
Q Consensus 199 iw-d~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~ 275 (364)
-| |++...... .++.++-....+..+.-.. .+..+++-. ..|++.++.....+.+-.-..-....-+++||.+.
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~--~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLY--RNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQA 370 (733)
T ss_pred eeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEc--CCCceeeeecccCcceehhhhhcCcceeeeCcccc
Confidence 66 555443211 1112221222332222111 222333332 67777776654444332222223567789999999
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeeec
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
++++- +.|.++++.+++..+..++
T Consensus 371 ~Ll~e-------~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 371 YLLSE-------DQGKIRLAQLENRNPEISW 394 (733)
T ss_pred hheee-------cCCceEEEEecCCCCCccH
Confidence 99874 3789999998876554433
No 464
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=93.24 E-value=5.2 Score=34.77 Aligned_cols=180 Identities=13% Similarity=0.159 Sum_probs=96.0
Q ss_pred cEEEEecCCcceeeeeec--CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC--CC
Q 040533 110 KLQLWDAETSKLIRNLEG--HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN--EG 185 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 185 (364)
.|.|.| +....+..+++ ...+|.++.|.. +--++++--.---+.+.|+.+.+.+.. +..-.-+-.+--.+| ++
T Consensus 407 ~vYilD-e~lnvvGkltGl~~gERIYAvRf~g-dv~yiVTfrqtDPlfviDlsNPenPkv-lGeLKIPGfS~YLHpigen 483 (603)
T COG4880 407 AVYILD-ENLNVVGKLTGLAPGERIYAVRFVG-DVLYIVTFRQTDPLFVIDLSNPENPKV-LGELKIPGFSEYLHPIGEN 483 (603)
T ss_pred eeEEEc-CCCcEEEEEeccCCCceEEEEEEeC-ceEEEEEEeccCceEEEEcCCCCCCce-eEEEecCCchhhccccCCC
Confidence 355555 34555566654 467899999965 555666665556788889887664321 111111111112345 45
Q ss_pred CEEEEEeCCCe--EEEEeCCCCCCCcceEEecccc------cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE
Q 040533 186 NLLASGGDDNL--VHVWDHSKMSSSKCLHRFRDHR------AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH 257 (364)
Q Consensus 186 ~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~ 257 (364)
.+|-.|-.+|. |.++|+.....++.+....-.. ..-.+..|+|...-++.-+. ..|. ++.++.|..+.
T Consensus 484 ~~lGvG~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay--~~gy--if~iedg~kl~ 559 (603)
T COG4880 484 RLLGVGAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAY--LGGY--IFFIEDGSKLR 559 (603)
T ss_pred cEEEeecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEeccc--CccE--EEEEecCceee
Confidence 67777777775 5578988766554443332111 11234555665544444433 4555 44444443322
Q ss_pred E-EecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeee
Q 040533 258 S-VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE 305 (364)
Q Consensus 258 ~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 305 (364)
. -.+...+...-|..+--+++. ...+.++|-.+.+.+.+
T Consensus 560 k~~e~k~na~RA~fi~dylY~vg---------~~ev~~ldenswe~Vge 599 (603)
T COG4880 560 KRAERKLNADRAFFIKDYLYLVG---------GNEVWKLDENSWEVVGE 599 (603)
T ss_pred ehhhhcccceeeEEecceEEEec---------cceeEEeccchHhhhhh
Confidence 2 233444555555555555543 45677777666655543
No 465
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.20 E-value=2.9 Score=34.68 Aligned_cols=90 Identities=19% Similarity=0.379 Sum_probs=57.6
Q ss_pred CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEee------CCCcEEEEEcccCcceeeeeec-----ccCcEE
Q 040533 109 SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGS------QDKSIINHDVRVSNNVTSRINA-----HTAEVC 177 (364)
Q Consensus 109 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~-----~~~~v~ 177 (364)
..|++||..+.+....-.+-.+.|+.+.|.. +.++++.|. ....+..||+.+.. ...+.. -.++|.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccCCCcEE
Confidence 3599999887776655555678899999985 666777664 34568889987554 323322 247788
Q ss_pred EEEEcC-CCC-EEEEEe-C--CCeEEEEe
Q 040533 178 GLKWSN-EGN-LLASGG-D--DNLVHVWD 201 (364)
Q Consensus 178 ~~~~~~-~~~-~l~~~~-~--d~~i~iwd 201 (364)
.+.+.. ++. ..+.|. . +..|..||
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEc
Confidence 887744 333 333333 2 33567776
No 466
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.59 E-value=3.9 Score=33.94 Aligned_cols=91 Identities=19% Similarity=0.297 Sum_probs=58.6
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe------cCCcEEEEecCCcceeeeeec-----CCCcEE
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY------MASKLQLWDAETSKLIRNLEG-----HDKRVA 133 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~-----~~~~v~ 133 (364)
..|.+||..+.+....-. +-.+.|+++.|..+.+.++.|. ....+..||.++.... .+.. -.++|.
T Consensus 16 ~~lC~yd~~~~qW~~~g~--~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGN--GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVT 92 (281)
T ss_pred CEEEEEECCCCEeecCCC--CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEE
Confidence 589999999888755543 4567899999986666676664 3446888998776542 2222 247888
Q ss_pred EEEeecCCCC-EEEEee-CCC--cEEEEE
Q 040533 134 TASWNHWNGH-ILTSGS-QDK--SIINHD 158 (364)
Q Consensus 134 ~~~~~~~~~~-~l~~~~-~dg--~i~~~d 158 (364)
.+.+...+.. +.+.|. .+| .|..||
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEc
Confidence 8888554554 443443 333 344554
No 467
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.59 E-value=5.2 Score=35.80 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=21.9
Q ss_pred eeEEeecCCC---CEEEEEeCCCcEEEEEeeCCCCC
Q 040533 313 ILELSQSPDG---LTVVSAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 313 i~~i~~~~~~---~~l~~~~~dg~i~vw~~~~~~~~ 345 (364)
+..++|+|+. ..|..-+.|+.||+|++...+.+
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 4556677754 46666677778888877766554
No 468
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=92.57 E-value=11 Score=36.63 Aligned_cols=67 Identities=10% Similarity=0.089 Sum_probs=48.9
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec----cc---------------cccceeEEeecCCCC
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL----QH---------------QTSRILELSQSPDGL 323 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~----~~---------------~~~~i~~i~~~~~~~ 323 (364)
..|.++....-+..++.... ||.|.++|..+.+.+... .. ....+..++|||.+.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~------DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c 333 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFS------DGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMC 333 (753)
T ss_pred CeEEEEEecccCcEEEEEEc------CCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccc
Confidence 45777777777777777655 999999999887665444 10 011344588999999
Q ss_pred EEEEEeCCCcEE
Q 040533 324 TVVSAAADETLR 335 (364)
Q Consensus 324 ~l~~~~~dg~i~ 335 (364)
.++.-..+|.+.
T Consensus 334 ~~v~~~~~~~~~ 345 (753)
T PF11635_consen 334 SLVQIDEDGKTK 345 (753)
T ss_pred eEEEEecCCCce
Confidence 999999999866
No 469
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.31 E-value=4.1 Score=36.42 Aligned_cols=75 Identities=13% Similarity=0.037 Sum_probs=50.5
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEec---------CCcceeeeee-----------cCCCcEEEEEeecCC--CCEEE
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDA---------ETSKLIRNLE-----------GHDKRVATASWNHWN--GHILT 146 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~---------~~~~~~~~~~-----------~~~~~v~~~~~~~~~--~~~l~ 146 (364)
.|..+..++.|..++-.+.+|.+..+=. ++|+.....+ ...-.+..++|+|.. +..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4677888999999998888886554421 2333221111 112245678899955 57888
Q ss_pred EeeCCCcEEEEEcccCc
Q 040533 147 SGSQDKSIINHDVRVSN 163 (364)
Q Consensus 147 ~~~~dg~i~~~d~~~~~ 163 (364)
.-+.|..+++||+....
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 88899999999987544
No 470
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.06 E-value=1.1 Score=38.94 Aligned_cols=163 Identities=20% Similarity=0.129 Sum_probs=92.7
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee-eee-ecCCC----cEE-EEEeecCCCCEEEEeeCCCcEE
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI-RNL-EGHDK----RVA-TASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~-~~~~~----~v~-~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
+......|..+-..|||+.|..-+. ..+.|+++.+.... +++ ....+ .|+ .+..-. .+.-+.+++.||.|.
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vs 293 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVS 293 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCcee
Confidence 3344567788889999998877654 67899988754321 111 11111 122 112222 567788889999888
Q ss_pred EE-EcccCcce----eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC
Q 040533 156 NH-DVRVSNNV----TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ 230 (364)
Q Consensus 156 ~~-d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 230 (364)
-| |++.+... ++.++-...++..+.-..+.+-+++-+..|++.++.-... +.+. +..--..+.-++++|.+
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~---~~lL-~~~~~~~~~~~~~Sp~~ 369 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSE---KLLL-FERAYQAPQLVAMSPNQ 369 (733)
T ss_pred eeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccC---ccee-hhhhhcCcceeeeCccc
Confidence 76 55443321 1111112233333322223456777778888877753321 1111 12222356678999999
Q ss_pred CcEEEeecCCCCCeEEEEECCCCeE
Q 040533 231 FNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 231 ~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
.+++.- ..|.++++.+++..+
T Consensus 370 ~~Ll~e----~~gki~~~~l~Nr~P 390 (733)
T COG4590 370 AYLLSE----DQGKIRLAQLENRNP 390 (733)
T ss_pred chheee----cCCceEEEEecCCCC
Confidence 777764 468899998877543
No 471
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=92.03 E-value=2.4 Score=28.05 Aligned_cols=41 Identities=10% Similarity=0.057 Sum_probs=32.2
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeec
Q 040533 241 QDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
.+|.+.-||..+++....+..-.-.+.+++++++.+++.+.
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 68999999999998766666666789999999999888764
No 472
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.99 E-value=7.2 Score=33.33 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=51.8
Q ss_pred CCCEEEEEecCC-----cEEEEecCCcce---eeeeecCCCcE--EEEEeecCCCCEEEEeeCC-----CcEEEEEcccC
Q 040533 98 DAKTLAVGYMAS-----KLQLWDAETSKL---IRNLEGHDKRV--ATASWNHWNGHILTSGSQD-----KSIINHDVRVS 162 (364)
Q Consensus 98 ~~~~l~~~~~dg-----~i~iw~~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~ 162 (364)
++.+++.|+.++ .+..||+.+.+. ...+..-..+. .+++.. ++.+.+.|+.. ..+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 456667776542 467777766553 12221111111 122222 67777777642 35778888765
Q ss_pred cceeeeeec--ccCcEEEEEEcCCCCEEEEEeCCC----eEEEEeCCCC
Q 040533 163 NNVTSRINA--HTAEVCGLKWSNEGNLLASGGDDN----LVHVWDHSKM 205 (364)
Q Consensus 163 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~ 205 (364)
+- ..+.. ........+...++++.+.|+.++ .+..||..+.
T Consensus 150 ~W--~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 150 EW--FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred Ce--eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 42 21211 111111222233567777777654 3567887654
No 473
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.95 E-value=13 Score=36.21 Aligned_cols=161 Identities=11% Similarity=0.110 Sum_probs=99.4
Q ss_pred CCCCCceEEEEc---C----CCCEEEEEecCCcEEEEecCCc---------------ceeeeeec---CCCcEEEEEeec
Q 040533 85 GEDDFPTSISWS---Q----DAKTLAVGYMASKLQLWDAETS---------------KLIRNLEG---HDKRVATASWNH 139 (364)
Q Consensus 85 ~~~~~v~~~~~s---~----~~~~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~---~~~~v~~~~~~~ 139 (364)
.-..+|..|+|. . ..++|++= ....+.|+...-. ..+..+.. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 346788899998 2 22455554 4567788772211 12223331 345678899999
Q ss_pred CCCCEEEEeeCCCcEEEEEcccCc----ceeeeeecccC----------cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 140 WNGHILTSGSQDKSIINHDVRVSN----NVTSRINAHTA----------EVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 140 ~~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.+...||.....|...||++.... ........+.+ .-..+.|.++.+.|++++. ..+.++|++..
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 888999999999999999992111 11111111112 2346888888778887764 46899998876
Q ss_pred CCCcceEEecccccceeEEEEccCCC-cEEEeecCCCCCeEEEEECCC
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQF-NVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~g~~d~~i~i~d~~~ 252 (364)
.....+. .......|..+.-+|... ++++. ....|...++..
T Consensus 235 ~~~~~l~-~~~~~~~IlDv~~~~~~~~~~FiL----Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLV-TAKTWSWILDVKRSPDNPSHVFIL----TSKEIIWLDVKS 277 (765)
T ss_pred Cccchhc-cCCChhheeeEEecCCccceEEEE----ecCeEEEEEccC
Confidence 5433222 223456788888888732 22222 246788888876
No 474
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.71 E-value=4.6 Score=40.25 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=89.4
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEE--------EccCCCcEEEeecCCCCCeEEEE
Q 040533 177 CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALA--------WCPYQFNVLASGGGTQDGCIKIW 248 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~g~~d~~i~i~ 248 (364)
..+-+-|.=.. +-.+.|+.+.+|+.++... ...+.+-...|..+. |-|.=+++++.+. --.|.++
T Consensus 82 ~~mGiFpeI~R-aWiTiDn~L~lWny~~~~e---~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT---~~ei~il 154 (1311)
T KOG1900|consen 82 TDMGIFPEIGR-AWITIDNNLFLWNYESDNE---LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT---PVEIVIL 154 (1311)
T ss_pred eeeccchhhcc-eEEEeCCeEEEEEcCCCCc---cccccchhhhheeeeeecCCCCcchhhhheeEEecc---cceEEEE
Confidence 34444453222 2234588999999987544 444444444454443 3344446666653 4445555
Q ss_pred ECCC----CeE-----EEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC-----c---e--------
Q 040533 249 NVQK----GTC-----IHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM-----T---K-------- 302 (364)
Q Consensus 249 d~~~----~~~-----~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~-----~---~-------- 302 (364)
-+.- +.. ..++.. +..|.++....+|+.+++|. ||.|+=.-.... + .
T Consensus 155 gV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-------dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~l 227 (1311)
T KOG1900|consen 155 GVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-------DGNLYELVYQAEDGWFGSRCRKICLTKSVL 227 (1311)
T ss_pred EEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-------CCCEEEEEEeccCchhhcccccccCchhHH
Confidence 4321 111 012222 45688999888999998875 664432221110 0 0
Q ss_pred ------eeecc-ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 303 ------WGELQ-HQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 303 ------~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
+..+. .+..+|..++.......+.+-+..|+|.+|++..
T Consensus 228 s~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 228 SSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred HHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11222 4567999999988888999999999999999987
No 475
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.67 E-value=8.4 Score=33.47 Aligned_cols=188 Identities=13% Similarity=0.175 Sum_probs=103.4
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEc----CCCCE--EEEEe-CC---CeEEEEeCCCCCCCcc
Q 040533 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS----NEGNL--LASGG-DD---NLVHVWDHSKMSSSKC 210 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---~~i~iwd~~~~~~~~~ 210 (364)
...+++...+++-+.+||+.... +..+. .+.++-+..- -.|+. |+.++ .+ ..|++|.+... .. .
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~--lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~-~g-~ 140 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKE--LQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPD-TG-E 140 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-E--EEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETT-TT-E
T ss_pred ccceEEEEeCCCCEEEEcCCCcE--EEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCC-CC-c
Confidence 55688888888999999997432 33332 2333333221 13332 44444 32 46999977532 11 2
Q ss_pred eEEecc-------cccceeEEEE--cc-CCCcEEEeecCCCCCeEEEEECC---CC----eEEEEEecCCCeEEEEEcCC
Q 040533 211 LHRFRD-------HRAAVKALAW--CP-YQFNVLASGGGTQDGCIKIWNVQ---KG----TCIHSVDTKAQICGLEWNRH 273 (364)
Q Consensus 211 ~~~~~~-------~~~~v~~~~~--~~-~~~~~~~~~~g~~d~~i~i~d~~---~~----~~~~~~~~~~~v~~~~~~~~ 273 (364)
+..+.. ....++.+++ +| ++...+.... .+|.+..|.+. ++ +.++.+...+++..+.....
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~--k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe 218 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG--KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDE 218 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE--TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETT
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec--CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecc
Confidence 332221 1223666776 33 3444444443 78988888774 33 56888888899999999999
Q ss_pred ccceeeeccCCccCCCCeEEEeeCCC-----Cceeeeccc--cccceeEEeec--CCC-CEEEEE-eCCCcEEEEEeeCC
Q 040533 274 HKEILSGHGFSSSGDGQKLCLWKYPH-----MTKWGELQH--QTSRILELSQS--PDG-LTVVSA-AADETLRFWEAFGP 342 (364)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~i~i~d~~~-----~~~~~~~~~--~~~~i~~i~~~--~~~-~~l~~~-~~dg~i~vw~~~~~ 342 (364)
...|+.+. ++.-|.-|+.+- ++.+....+ ....|-.|++- +++ .||++. -.+++..||+....
T Consensus 219 ~g~LYvgE------E~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 219 TGRLYVGE------EDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTEEEEEE------TTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred cCCEEEec------CccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999884 366677776642 222322222 23456666664 343 355444 45778999997754
No 476
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.59 E-value=2.1 Score=39.72 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=43.7
Q ss_pred CCccEEEEEeCCeEEEEECCC----Cceeeeeeec--------------------CCCCCceEEEEcC----CCCEEEEE
Q 040533 54 GRNNILAIALGLELYLWKQEN----GEVQKLLKVT--------------------GEDDFPTSISWSQ----DAKTLAVG 105 (364)
Q Consensus 54 ~~~~~~~~~~~~~i~iw~~~~----~~~~~~~~~~--------------------~~~~~v~~~~~s~----~~~~l~~~ 105 (364)
++..++.+..||.+....... +......... .....+..+++++ +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 556677777888877777654 1111111000 1123456667766 67899999
Q ss_pred ecCCcEEEEecCCcceeeeee
Q 040533 106 YMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 106 ~~dg~i~iw~~~~~~~~~~~~ 126 (364)
+.|+++++||+.+++++....
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEec
Confidence 999999999999999866543
No 477
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=91.53 E-value=12 Score=35.03 Aligned_cols=166 Identities=15% Similarity=0.166 Sum_probs=83.8
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee--eeec-CCCcEEEEEeecC-----CCCEEEEeeC-CC---cE
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR--NLEG-HDKRVATASWNHW-----NGHILTSGSQ-DK---SI 154 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~-~~~~v~~~~~~~~-----~~~~l~~~~~-dg---~i 154 (364)
.+.|..+.|.++++.+++...+|.|.+||...+.... .+.. +...+.-=.|-+. ..+++++.+. ++ ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 6678999999999999999999999999993332211 2211 1111111122221 2345554444 32 45
Q ss_pred EEEEcccCcceeeeee---cccCcE--EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEe---cccccceeEEEE
Q 040533 155 INHDVRVSNNVTSRIN---AHTAEV--CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRF---RDHRAAVKALAW 226 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~---~~~~~v--~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~ 226 (364)
+++.+.........+. .+.... ..+++. +|.+..- .++.|.+|++...+..+.+... ......+.++.
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~- 284 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK- 284 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee-
Confidence 6676622221122221 111112 223332 4543322 5778999998665332211111 11112233332
Q ss_pred ccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe
Q 040533 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD 260 (364)
Q Consensus 227 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 260 (364)
.|..++++.+ .++.|++.|+.-...+.+++
T Consensus 285 ~~s~nRvLLs----~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 285 PPSPNRVLLS----VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred cCCCCeEEEE----cCCEEEEEeehhhhhhhhhh
Confidence 2333356665 47899999997665555544
No 478
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.51 E-value=3.1 Score=38.83 Aligned_cols=91 Identities=15% Similarity=0.115 Sum_probs=50.4
Q ss_pred ECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEE
Q 040533 249 NVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA 328 (364)
Q Consensus 249 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 328 (364)
|+-.|.....+.+.+.|.-+..+..+..++.- ...-.+.++|+.+.+....+ +-.+-+.|-|....++.-
T Consensus 324 dli~g~~~~~inh~~~vdwielne~~~kllfr------dkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaq 393 (1636)
T KOG3616|consen 324 DLIGGQNEGFINHEGAVDWIELNERAHKLLFR------DKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQ 393 (1636)
T ss_pred ecccCcccccccccccccceeccchhhhhhcc------cccceeEEEEcccchHHHHH----HHhhhheeccCcceEEec
Confidence 33334444444445555555555555544433 12455677777654432222 223567899988888877
Q ss_pred eCCCcEEEEEeeCCCCCccee
Q 040533 329 AADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 329 ~~dg~i~vw~~~~~~~~~~~~ 349 (364)
+.|+...-|++..++.+..+.
T Consensus 394 n~dnl~iwyn~d~peqvt~~k 414 (1636)
T KOG3616|consen 394 NGDNLCIWYNIDAPEQVTMFK 414 (1636)
T ss_pred CCCceEEEecCCcchhheeeE
Confidence 777555455666666655443
No 479
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=91.44 E-value=15 Score=36.02 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=49.4
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECC-CCceeeeeeecCCCCCceEEEEcCCC------CEEEEEecCCcEEEEecCCc
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQE-NGEVQKLLKVTGEDDFPTSISWSQDA------KTLAVGYMASKLQLWDAETS 119 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~~~~~dg~i~iw~~~~~ 119 (364)
.+...+.+...++.+-+++.+..+... +++.....+-..-...|.|+++.+++ ++++.|+.|+.++++.+...
T Consensus 541 ~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~ 620 (1205)
T KOG1898|consen 541 RIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPS 620 (1205)
T ss_pred EEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCc
Confidence 344444444445555566666666543 44433333222346678999998865 58999999999999998755
Q ss_pred ceeeee
Q 040533 120 KLIRNL 125 (364)
Q Consensus 120 ~~~~~~ 125 (364)
..+..+
T Consensus 621 d~l~~l 626 (1205)
T KOG1898|consen 621 DCLQPL 626 (1205)
T ss_pred ceEEEc
Confidence 554443
No 480
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=91.43 E-value=16 Score=36.39 Aligned_cols=181 Identities=15% Similarity=0.159 Sum_probs=97.4
Q ss_pred EEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC---------CCCEEEEEec---------CCcEEEEecCC----
Q 040533 61 IALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ---------DAKTLAVGYM---------ASKLQLWDAET---- 118 (364)
Q Consensus 61 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~---------~~~~l~~~~~---------dg~i~iw~~~~---- 118 (364)
-+....|.+.+..+.+.....+++ ...-|++++... ...+||+|.. .|.++|||+-.
T Consensus 1000 ~~~~f~i~LisP~sw~vi~~iefq-~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPe 1078 (1366)
T KOG1896|consen 1000 EGEQFSIQLISPESWEVIDKIEFQ-ENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPE 1078 (1366)
T ss_pred ccccceeEEecCCccccccccccC-ccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCC
Confidence 334467777777777766555553 233455555431 1358888863 48899999732
Q ss_pred -cce-----eeee--ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee-eeecccCcEEEEEEcCCCCEEE
Q 040533 119 -SKL-----IRNL--EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS-RINAHTAEVCGLKWSNEGNLLA 189 (364)
Q Consensus 119 -~~~-----~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~ 189 (364)
|++ ++.+ +..+++|..++=- +|.++.+- .-.|.+|+++....++- .+-. -++.-....--.++|+
T Consensus 1079 pgkP~t~~KlKel~~eE~KGtVsavceV--~G~l~~~~--GqKI~v~~l~r~~~ligVaFiD--~~~yv~s~~~vknlIl 1152 (1366)
T KOG1896|consen 1079 PGKPFTKNKLKELYIEEQKGTVSAVCEV--RGHLLSSQ--GQKIIVRKLDRDSELIGVAFID--LPLYVHSMKVVKNLIL 1152 (1366)
T ss_pred CCCCcccceeeeeehhhcccceEEEEEe--ccEEEEcc--CcEEEEEEeccCCcceeeEEec--cceeEEehhhhhhhee
Confidence 221 2211 2356777777643 56554433 34799999954443222 1211 2222222223355777
Q ss_pred EEeCCCeEEEEeCCCCCCCcceEEecc--cccceeEEEEccCCCcEEEeecCCCCCeEEEEECC
Q 040533 190 SGGDDNLVHVWDHSKMSSSKCLHRFRD--HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 190 ~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 251 (364)
.|.--..|.+.-.... +..+..+.. ..-.+.++.|--+|..+-...+ ..++.|++|-..
T Consensus 1153 ~gDV~ksisfl~fqee--p~rlsL~srd~~~l~v~s~EFLVdg~~L~flvs-Da~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1153 AGDVMKSISFLGFQEE--PYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVS-DADRNIHVYMYA 1213 (1366)
T ss_pred hhhhhhceEEEEEccC--ceEEEEeecCCchhhceeeeeEEcCCeeEEEEE-cCCCcEEEEEeC
Confidence 7776666766554332 122222211 2335777888777766533332 378888888543
No 481
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.42 E-value=6.6 Score=39.25 Aligned_cols=156 Identities=12% Similarity=0.193 Sum_probs=88.3
Q ss_pred eEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEe--------ecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 91 TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASW--------NHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 91 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
+.+-+-|.=.+.... -|+.+.+|+.+++.....+.+-...|..+.. .| .=++++....--.|.++-+.-.
T Consensus 82 ~~mGiFpeI~RaWiT-iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~-~IqhlLvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWIT-IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVP-EIQHLLVVATPVEIVILGVSFD 159 (1311)
T ss_pred eeeccchhhcceEEE-eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchh-hhheeEEecccceEEEEEEEec
Confidence 344444543333333 4789999999998777777766666666543 23 2233444444445666654322
Q ss_pred cc--eee------eeecccCcEEEEEEcCCCCEEEEEeCCCeEEE--EeCCCCCCC-----------------cceEEec
Q 040533 163 NN--VTS------RINAHTAEVCGLKWSNEGNLLASGGDDNLVHV--WDHSKMSSS-----------------KCLHRFR 215 (364)
Q Consensus 163 ~~--~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i--wd~~~~~~~-----------------~~~~~~~ 215 (364)
.. ... .+......|+++....+|+.+++| .||.|+- |....+-.. ..+..+.
T Consensus 160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~ 238 (1311)
T KOG1900|consen 160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP 238 (1311)
T ss_pred cccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC
Confidence 11 011 122234568899877888777655 5664432 221111000 0012222
Q ss_pred -ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 216 -DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 216 -~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
.+..+|..++..... .++.+-+ ..++|.+||+..
T Consensus 239 ~~~~dpI~qi~ID~SR-~IlY~ls--ek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 239 GSSKDPIRQITIDNSR-NILYVLS--EKGTVSAYDIGG 273 (1311)
T ss_pred CCCCCcceeeEecccc-ceeeeec--cCceEEEEEccC
Confidence 456789999988655 5666654 899999999976
No 482
>PLN02193 nitrile-specifier protein
Probab=91.28 E-value=11 Score=34.19 Aligned_cols=134 Identities=11% Similarity=0.058 Sum_probs=64.7
Q ss_pred eEEEEECCCCceeeeeeecCCCC--CceEEEEcCCCCEEEEEecC-----CcEEEEecCCcceeeeeec----CCCcEEE
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDD--FPTSISWSQDAKTLAVGYMA-----SKLQLWDAETSKLIRNLEG----HDKRVAT 134 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~----~~~~v~~ 134 (364)
.+.+||+.+.+............ ........-++.+.+.|+.+ ..+..||+.+.+....-.. ....-.+
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 57888888876643221100010 11111112245666777654 3588899887644322111 1111112
Q ss_pred EEeecCCCCEEEEeeCCC-----cEEEEEcccCcceeeeeec------ccCcEEEEEEcCCCCEEEEEeCC----CeEEE
Q 040533 135 ASWNHWNGHILTSGSQDK-----SIINHDVRVSNNVTSRINA------HTAEVCGLKWSNEGNLLASGGDD----NLVHV 199 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d----~~i~i 199 (364)
++. - ++.+++.|+.++ .+..||+.+..- ..... ..... .++. -++++++.++.+ ..+.+
T Consensus 274 ~~~-~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W--~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~ 347 (470)
T PLN02193 274 MAA-D-EENVYVFGGVSATARLKTLDSYNIVDKKW--FHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHY 347 (470)
T ss_pred EEE-E-CCEEEEECCCCCCCCcceEEEEECCCCEE--EeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEE
Confidence 222 2 677777777653 366777765432 11111 11111 1221 256677777654 45888
Q ss_pred EeCCCC
Q 040533 200 WDHSKM 205 (364)
Q Consensus 200 wd~~~~ 205 (364)
||+.+.
T Consensus 348 yD~~t~ 353 (470)
T PLN02193 348 YDPVQD 353 (470)
T ss_pred EECCCC
Confidence 997764
No 483
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.78 E-value=1.6 Score=23.74 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=24.0
Q ss_pred CCCCEEEEEe-cCCcEEEEecCCcceeeeeec
Q 040533 97 QDAKTLAVGY-MASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 97 ~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 127 (364)
|++++|.++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666655 578999999998888877765
No 484
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.87 E-value=14 Score=31.58 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=32.7
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC----cEEEEecCCcce
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS----KLQLWDAETSKL 121 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~iw~~~~~~~ 121 (364)
..+..||+.+.+...+..+.... .....+...++++.+.|+.++ .+.+||.++.+.
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 46888898888775554332211 122222334667777787654 356888877653
No 485
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.71 E-value=2 Score=23.06 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=21.0
Q ss_pred cccceeEEEEccCCCcEEEeecCCCC--CeEEEE
Q 040533 217 HRAAVKALAWCPYQFNVLASGGGTQD--GCIKIW 248 (364)
Q Consensus 217 ~~~~v~~~~~~~~~~~~~~~~~g~~d--~~i~i~ 248 (364)
....-....|+|+|+.++.+.. .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~--~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSN--RNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEE--CT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEec--CCCCCCcCEE
Confidence 3455678899999998888875 55 666555
No 486
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.54 E-value=16 Score=31.92 Aligned_cols=226 Identities=13% Similarity=0.043 Sum_probs=0.0
Q ss_pred CCEEEEEecCCcEEEEecCCcceeeeeecCC--CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc-Cc
Q 040533 99 AKTLAVGYMASKLQLWDAETSKLIRNLEGHD--KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT-AE 175 (364)
Q Consensus 99 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~ 175 (364)
...+.++..+|.|.-.|.++++.+.....-. ..+..-.+.. +++ ++.++.+|.+..+|.++++. .-...... -.
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~~~ 144 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTL-VWSRNVGGSPY 144 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcE-EEEEecCCCeE
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC--CCeEEEEECCCC
Q 040533 176 VCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ--DGCIKIWNVQKG 253 (364)
Q Consensus 176 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~--d~~i~i~d~~~~ 253 (364)
+..-..-.++..++.. .++.+...|..++...-....... ......-... .....+..+. . ++.+.-.|..+|
T Consensus 145 ~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~-~~~~~vy~~~--~~~~~~~~a~~~~~G 219 (370)
T COG1520 145 YASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPA-IASGTVYVGS--DGYDGILYALNAEDG 219 (370)
T ss_pred EecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCc-cccccccCce-eecceEEEec--CCCcceEEEEEccCC
Q ss_pred eEEEEEecCCCeEEEEE----cCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEe
Q 040533 254 TCIHSVDTKAQICGLEW----NRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 254 ~~~~~~~~~~~v~~~~~----~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 329 (364)
...........+..-.. .-.+..+.+.......+.++.+.-.+..+++.+.++... ......+-+...-.
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~------~~~~~~~~~~~~~~ 293 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG------GSVQGSGLYTTPVA 293 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc------cEeccCCeeEEeec
Q ss_pred C-CCcEEEEE
Q 040533 330 A-DETLRFWE 338 (364)
Q Consensus 330 ~-dg~i~vw~ 338 (364)
. ||.+.++.
T Consensus 294 ~~dG~v~~~~ 303 (370)
T COG1520 294 GADGKVYIGF 303 (370)
T ss_pred CCCccEEEEE
No 487
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.43 E-value=16 Score=31.80 Aligned_cols=193 Identities=15% Similarity=0.175 Sum_probs=106.6
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC----CCCE--EEEEec-C---CcEEEEecCC--cceeeee
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ----DAKT--LAVGYM-A---SKLQLWDAET--SKLIRNL 125 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~--l~~~~~-d---g~i~iw~~~~--~~~~~~~ 125 (364)
+++...++-+.+||++..+...+ . .+.++.+..-. .|+. ||+++. + ..|++|.+.. +. +..+
T Consensus 71 IigTdK~~GL~VYdL~Gk~lq~~-~----~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v 144 (381)
T PF02333_consen 71 IIGTDKKGGLYVYDLDGKELQSL-P----VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDV 144 (381)
T ss_dssp EEEEETTTEEEEEETTS-EEEEE------SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-
T ss_pred EEEEeCCCCEEEEcCCCcEEEee-c----CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEc
Confidence 55566778999999987765332 2 22344333321 3332 445543 2 4699998753 33 3332
Q ss_pred ec-------CCCcEEEEEe--ecCCCC-EEEEeeCCCcEEEEEcccCc------ceeeeeecccCcEEEEEEcCCCCEEE
Q 040533 126 EG-------HDKRVATASW--NHWNGH-ILTSGSQDKSIINHDVRVSN------NVTSRINAHTAEVCGLKWSNEGNLLA 189 (364)
Q Consensus 126 ~~-------~~~~v~~~~~--~~~~~~-~l~~~~~dg~i~~~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (364)
.. ....+..+|+ +|.++. +++....+|.+..|.+.... .+++.+.. ...+..+........|+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY 223 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE
Confidence 21 1234566665 443444 66677889999888876322 23444433 34688888888888999
Q ss_pred EEeCCCeEEEEeCCCCCC--CcceEEecc--cccceeEEEEc--cCC-CcEEEeecCCCCCeEEEEECCCC-eEEEEE
Q 040533 190 SGGDDNLVHVWDHSKMSS--SKCLHRFRD--HRAAVKALAWC--PYQ-FNVLASGGGTQDGCIKIWNVQKG-TCIHSV 259 (364)
Q Consensus 190 ~~~~d~~i~iwd~~~~~~--~~~~~~~~~--~~~~v~~~~~~--~~~-~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~ 259 (364)
.+-++.-|.-|+.+.... ...+....+ ....|..|+.- +++ .+++++.- -+++..+|+.+.. ..+..+
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ--G~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ--GDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG--GGTEEEEEESSTT--EEEEE
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC--CCCeEEEEecCCCCcccceE
Confidence 999998888888763322 222222222 23467777764 333 35666654 5789999998753 334333
No 488
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.42 E-value=12 Score=30.44 Aligned_cols=143 Identities=13% Similarity=0.143 Sum_probs=75.4
Q ss_pred EEEEEcccCcceeeeee-cccCcEEEEEEcCCCCEEEEEeC-C--CeEEEEeCCCCCCCcceEEe---cccccceeEEEE
Q 040533 154 IINHDVRVSNNVTSRIN-AHTAEVCGLKWSNEGNLLASGGD-D--NLVHVWDHSKMSSSKCLHRF---RDHRAAVKALAW 226 (364)
Q Consensus 154 i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~ 226 (364)
-.+||+.+... +.+. ....-..+-.+-+||+++.+|+. + ..+++++............. -....+--+...
T Consensus 48 s~~yD~~tn~~--rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTF--RPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcE--EeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 34788876652 2221 12222334457789999998874 2 35778875430000000000 012233345556
Q ss_pred ccCCCcEEEeecCCCCCeEEEEECCCC--eEEE--EEec------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 227 CPYQFNVLASGGGTQDGCIKIWNVQKG--TCIH--SVDT------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 227 ~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~--~~~~------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
-|+|+ +++.|| +...+..+|.-... .... .+.. ..--..+...|+|+.++.+ +..-.|||
T Consensus 126 L~DG~-vlIvGG-~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~a--------n~~s~i~d 195 (243)
T PF07250_consen 126 LPDGR-VLIVGG-SNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFA--------NRGSIIYD 195 (243)
T ss_pred CCCCC-EEEEeC-cCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEE--------cCCcEEEe
Confidence 67885 555553 35555666665321 1111 1110 1123456778999999887 55667789
Q ss_pred CCCCceeeeccc
Q 040533 297 YPHMTKWGELQH 308 (364)
Q Consensus 297 ~~~~~~~~~~~~ 308 (364)
..+.+.+..+..
T Consensus 196 ~~~n~v~~~lP~ 207 (243)
T PF07250_consen 196 YKTNTVVRTLPD 207 (243)
T ss_pred CCCCeEEeeCCC
Confidence 888877666653
No 489
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.40 E-value=2.1 Score=22.93 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=19.0
Q ss_pred cccceeEEeecCCCCEEEEEe-CC--CcEEEE
Q 040533 309 QTSRILELSQSPDGLTVVSAA-AD--ETLRFW 337 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~-~d--g~i~vw 337 (364)
....-....|+|||+.|+-++ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567889999999876654 44 555555
No 490
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.29 E-value=13 Score=30.52 Aligned_cols=238 Identities=13% Similarity=0.061 Sum_probs=137.3
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 166 (364)
......++-.|||..-.++...|.|--.|..+|+....--+....-..+..-| ++..-++-+.. -|.-.|.++.+...
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEE
Confidence 34457788899998888888888888889889887665555555566777777 66555443332 45555554443211
Q ss_pred ee--eecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc-cccceeEEEEccCCCcEEEeecCCCCC
Q 040533 167 SR--INAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD-HRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 167 ~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
.. ...-........|.+.|++-+++... .---.|-. ...+..+.. ....-+.|+..|+|+..+++- .++
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa----~~~i~vfpaPqG~gpyGi~atpdGsvwyasl---agn 210 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPA----RNVISVFPAPQGGGPYGICATPDGSVWYASL---AGN 210 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccc-cceecCcc----cCceeeeccCCCCCCcceEECCCCcEEEEec---ccc
Confidence 11 11233567788899999888877532 11111111 111222222 233456788999996655543 477
Q ss_pred eEEEEECCCCeEEEEEec---CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeee--ccccccceeEEee
Q 040533 244 CIKIWNVQKGTCIHSVDT---KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE--LQHQTSRILELSQ 318 (364)
Q Consensus 244 ~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~ 318 (364)
.|...|..++........ +.....+--+|.|..-++..+ .+.+..||..+.. ..+ +.+....-.++..
T Consensus 211 aiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg------~g~l~rfdPs~~s-W~eypLPgs~arpys~rV 283 (353)
T COG4257 211 AIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG------TGSLHRFDPSVTS-WIEYPLPGSKARPYSMRV 283 (353)
T ss_pred ceEEcccccCCcceecCCCcccccccccccCccCcEEEeccC------CceeeEeCccccc-ceeeeCCCCCCCcceeee
Confidence 788888877632222111 233455666677777666533 7777777765433 222 3333344456666
Q ss_pred cCCCCEEEEEeCCCcEEEEEeeC
Q 040533 319 SPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 319 ~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
...++.-.+--.-|.|.-+|.++
T Consensus 284 D~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 284 DRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred ccCCcEEeeccccCceeecCccc
Confidence 66665555444445565565544
No 491
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=88.13 E-value=14 Score=30.89 Aligned_cols=164 Identities=13% Similarity=0.127 Sum_probs=87.3
Q ss_pred CeEEEEECCCCceeeeeeecCC----CCCceEEEEcCCC-----CEEEEEe-cCCcEEEEecCCcceeeeeecC------
Q 040533 65 LELYLWKQENGEVQKLLKVTGE----DDFPTSISWSQDA-----KTLAVGY-MASKLQLWDAETSKLIRNLEGH------ 128 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~-----~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~------ 128 (364)
-.|.+||+.+++..+...++.+ ...+..+.+.... .++..+. ..+-|.|+|+.+++..+.+..+
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 3789999999998777776533 3456777776622 2333333 3357999999988765554321
Q ss_pred -------------CCcEEEEEeecC--CCCEEEEeeCCCcEEEEEcccC-----c----c----eeeeeecc-cCcEEEE
Q 040533 129 -------------DKRVATASWNHW--NGHILTSGSQDKSIINHDVRVS-----N----N----VTSRINAH-TAEVCGL 179 (364)
Q Consensus 129 -------------~~~v~~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~-----~----~----~~~~~~~~-~~~v~~~ 179 (364)
...+..++.+|. +++.|.-..-.+ -.+|.+.+. . . ..+.+ +. ......+
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~ 191 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGM 191 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccCCCCceE
Confidence 112444444331 223343333221 122322211 0 0 01111 22 1355678
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc---ccceeEEEEcc--CC
Q 040533 180 KWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH---RAAVKALAWCP--YQ 230 (364)
Q Consensus 180 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~~~--~~ 230 (364)
+++++|.++++--..+.|..|+....-..+....+... -..+..+.+.+ ++
T Consensus 192 ~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g 247 (287)
T PF03022_consen 192 AIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDG 247 (287)
T ss_dssp EEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS
T ss_pred EECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCc
Confidence 88999998888889999999998763322222222211 24567788877 55
No 492
>PLN02153 epithiospecifier protein
Probab=88.12 E-value=16 Score=31.47 Aligned_cols=95 Identities=12% Similarity=0.108 Sum_probs=48.6
Q ss_pred CeEEEEECCCCceeeeeeecCC-CC---CceEEEEcCCCCEEEEEecC-----CcEEEEecCCcceee--eeec---CCC
Q 040533 65 LELYLWKQENGEVQKLLKVTGE-DD---FPTSISWSQDAKTLAVGYMA-----SKLQLWDAETSKLIR--NLEG---HDK 130 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~-~~---~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~--~~~~---~~~ 130 (364)
..+.+||..+.+.......... .. ....+.+ ++++++.|+.+ ..+.+||..+.+-.. .+.. ...
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~ 127 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEA 127 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCC
Confidence 3688999888776543322110 10 1112222 46677777643 257888987654332 1110 111
Q ss_pred c-EEEEEeecCCCCEEEEeeCC-----------CcEEEEEcccCc
Q 040533 131 R-VATASWNHWNGHILTSGSQD-----------KSIINHDVRVSN 163 (364)
Q Consensus 131 ~-v~~~~~~~~~~~~l~~~~~d-----------g~i~~~d~~~~~ 163 (364)
. -.+++. - ++.+++.|+.+ ..+.+||+.+..
T Consensus 128 R~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 128 RTFHSMAS-D-ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred ceeeEEEE-E-CCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 1 122222 2 66777777754 246778877554
No 493
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.02 E-value=3.2 Score=38.53 Aligned_cols=40 Identities=23% Similarity=0.506 Sum_probs=25.9
Q ss_pred ceeEEEEcc---CCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 220 AVKALAWCP---YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 220 ~v~~~~~~~---~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
....++++. ++..++++-+ .|+++++||+.+++++.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~--~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLS--RDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEE--TTSEEEEEETTTTCEEEEEET
T ss_pred ccceEEEecceeCCCCEEEEEe--CCCeEEEEECCCCeEEEEecc
Confidence 344555555 2334555554 899999999999999776643
No 494
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=87.58 E-value=23 Score=32.58 Aligned_cols=248 Identities=14% Similarity=0.113 Sum_probs=113.7
Q ss_pred ccEEEEEeCCeEEEEECCCCce-eeeeeecCC-CCCceEEEEcCCC-CEEEEEecCCc--EEEEecCCcceeeeeecCCC
Q 040533 56 NNILAIALGLELYLWKQENGEV-QKLLKVTGE-DDFPTSISWSQDA-KTLAVGYMASK--LQLWDAETSKLIRNLEGHDK 130 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~-~~~~~~~~~-~~~v~~~~~s~~~-~~l~~~~~dg~--i~iw~~~~~~~~~~~~~~~~ 130 (364)
+.++.+..+|.++...+..... ..+..+ +. .....++++..+| .+|+.|+.-|. +.-|....-+.+..+. .-+
T Consensus 223 ~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~ 300 (504)
T PF10433_consen 223 DRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWG 300 (504)
T ss_dssp SEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----
T ss_pred CEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcC
Confidence 4577777889888887765431 122222 22 4456777777655 47777776554 4444434445555555 457
Q ss_pred cEEEEEeecC---CCC------EEEEee---CCCcEEEEEcccCcc-eeeeeecc--cCcEEEEEEcC-CCCEEEEEeCC
Q 040533 131 RVATASWNHW---NGH------ILTSGS---QDKSIINHDVRVSNN-VTSRINAH--TAEVCGLKWSN-EGNLLASGGDD 194 (364)
Q Consensus 131 ~v~~~~~~~~---~~~------~l~~~~---~dg~i~~~d~~~~~~-~~~~~~~~--~~~v~~~~~~~-~~~~l~~~~~d 194 (364)
+|..++..+. ... .|++++ .+|.+++..---+-. ........ -..++.+.... ++.+|+.+..+
T Consensus 301 Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~ 380 (504)
T PF10433_consen 301 PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPN 380 (504)
T ss_dssp SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS
T ss_pred CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCC
Confidence 8888888531 111 444443 567887764211111 01111111 23344444332 24566666654
Q ss_pred CeEEEEeCCCCCCCcceEE-----ecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--CCeEE
Q 040533 195 NLVHVWDHSKMSSSKCLHR-----FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--AQICG 267 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~v~~ 267 (364)
.-+++.+........+.. +......+.+-.+. ++ .++=. ....|++.+...++........ ..|.+
T Consensus 381 -~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~-~ivQV----t~~~i~l~~~~~~~~~~~w~~~~~~~I~~ 453 (504)
T PF10433_consen 381 -ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DG-RIVQV----TPKGIRLIDLEDGKLTQEWKPPAGSIIVA 453 (504)
T ss_dssp -EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TT-EEEEE----ESSEEEEEESSSTSEEEEEE-TTS---SE
T ss_pred -ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CC-eEEEE----ecCeEEEEECCCCeEEEEEeCCCCCeEEE
Confidence 445555531111111211 11112223222222 33 22222 2566999998887777665443 44555
Q ss_pred EEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-----ccccceeEEeecC
Q 040533 268 LEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-----HQTSRILELSQSP 320 (364)
Q Consensus 268 ~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~i~~i~~~~ 320 (364)
.+.+.. +++.+.. ++.+..+.+.......... .....|.++..+|
T Consensus 454 a~~~~~--~v~v~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 454 ASINDP--QVLVALS------GGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEESSS--EEEEEE-------TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEECCC--EEEEEEe------CCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 555443 3333322 7888888877655543222 1356778887765
No 495
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.50 E-value=21 Score=32.07 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=36.8
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce--eeee----e-cCCCcEEEEEeec
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL--IRNL----E-GHDKRVATASWNH 139 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~----~-~~~~~v~~~~~~~ 139 (364)
-.....|+|.|||++|++--..|.|++++..++.. +..+ . ........|+++|
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P 88 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP 88 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence 34578999999998877765469999998655432 1111 1 1356788999998
No 496
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.79 E-value=16 Score=29.99 Aligned_cols=196 Identities=10% Similarity=0.030 Sum_probs=110.5
Q ss_pred EEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcce
Q 040533 132 VATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCL 211 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 211 (364)
-..++-.| ++..-+++...+.|--.|..+++.... -.+....-..+..-|||..-++-+.. .|.-.|-++.+..+..
T Consensus 64 p~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~y-pLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 64 PFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETY-PLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred ccccccCC-CCceEEecCccccceecCCCCCceEEE-ecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence 34566667 787888888788888888887774322 22344445667778887755544333 4555554333221111
Q ss_pred EEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe--cCCCeEEEEEcCCccceeeeccCCccCCC
Q 040533 212 HRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDG 289 (364)
Q Consensus 212 ~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 289 (364)
..............|.+.| .+..++. .|.---.|-.+ ..+..+. ....-..++..|+|..-++... +
T Consensus 141 lp~~~a~~nlet~vfD~~G-~lWFt~q---~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyasla------g 209 (353)
T COG4257 141 LPLEHADANLETAVFDPWG-NLWFTGQ---IGAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLA------G 209 (353)
T ss_pred cccccCCCcccceeeCCCc-cEEEeec---cccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEecc------c
Confidence 1112234557788899998 5555542 22111112111 1222332 2345678888999988777543 7
Q ss_pred CeEEEeeCCCCceeee--ccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 290 QKLCLWKYPHMTKWGE--LQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 290 ~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
+.|...|..++..... -......-..+--+|.|+.-++....+.+..+|...
T Consensus 210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred cceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 7777777766522111 112123345566677888778777777777776544
No 497
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.51 E-value=14 Score=28.97 Aligned_cols=121 Identities=9% Similarity=0.037 Sum_probs=66.8
Q ss_pred eeCCCCCCCcceeecccCCCccEEEE-Ee--CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEE-EEecCCcE
Q 040533 36 ILDAPNLRNDYYSNMMDWGRNNILAI-AL--GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLA-VGYMASKL 111 (364)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i 111 (364)
++....+....+...+....+.++-. +. ...|++||+.+++......+.. ..+..=-...-|+++. -.-.+|.-
T Consensus 36 vi~~yphDs~sfTQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~gd~~y~LTw~egva 113 (262)
T COG3823 36 VIRTYPHDSTSFTQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKLGDYFYQLTWKEGVA 113 (262)
T ss_pred EEEeccCchhhhhcceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeeccceEEEEEecccee
Confidence 33333333344455555555544433 22 3589999999998755554431 1111111111123232 23368889
Q ss_pred EEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 112 QLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 112 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
.++|.++-+.+..+. ..+.=+.++- ++.-|+.++...++..-|.++-
T Consensus 114 f~~d~~t~~~lg~~~-y~GeGWgLt~---d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 114 FKYDADTLEELGRFS-YEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred EEEChHHhhhhcccc-cCCcceeeec---CCcceEeeCCceEEEecCHHHh
Confidence 999999888887766 3344566665 5555666555556776676543
No 498
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=86.25 E-value=27 Score=32.15 Aligned_cols=181 Identities=14% Similarity=0.066 Sum_probs=97.0
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCE
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHI 144 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 144 (364)
+.|++.| .+.+..-...--+....|.++.|--|.-+++|=-.---+.+.|+.+.+..+.+-.-+-+=.+=-.+|-+.++
T Consensus 304 N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~~e~~ 382 (521)
T PF09826_consen 304 NNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPYDENH 382 (521)
T ss_pred EEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeECCCCe
Confidence 4677777 444433333222567889999998887788876554468899988765444332211111222345545555
Q ss_pred EEEeeCCC------------cEEEEEcccCcceeeeeec------c----cCcEEEEEEcCCCCEEEEEeC-------CC
Q 040533 145 LTSGSQDK------------SIINHDVRVSNNVTSRINA------H----TAEVCGLKWSNEGNLLASGGD-------DN 195 (364)
Q Consensus 145 l~~~~~dg------------~i~~~d~~~~~~~~~~~~~------~----~~~v~~~~~~~~~~~l~~~~~-------d~ 195 (364)
|+.-+.+. .|.+||+.....+...... - ...-.++.|.+..++|+.--. -.
T Consensus 383 LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~~~~~~~~~~ 462 (521)
T PF09826_consen 383 LLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVSSSYGYFNFQ 462 (521)
T ss_pred EEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEEEccCccccc
Confidence 55444321 3678998765543322111 0 112246778887776665433 13
Q ss_pred eEEEEeCCCCCCCcceEEeccccc-------ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC
Q 040533 196 LVHVWDHSKMSSSKCLHRFRDHRA-------AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 253 (364)
.+.++++...........+. |.. .+....+..+ .+.+. .++.|+.+|+.+.
T Consensus 463 g~~v~~i~~~~g~~~~g~i~-h~~~~~~~~~~~~R~lyi~d--~lYtv----S~~~i~~~~l~t~ 520 (521)
T PF09826_consen 463 GAYVFSIDPEDGFTLKGKIT-HPSPDYYYSYQIQRSLYIGD--TLYTV----SDNGIKAYDLNTL 520 (521)
T ss_pred eEEEEEEeCCCCeEEEEEEE-ccCcccccccceeEEEEECC--EEEEE----ECCEEEEEehHhc
Confidence 46777766322222222222 333 2555555543 34433 3788999988753
No 499
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.84 E-value=24 Score=31.16 Aligned_cols=145 Identities=13% Similarity=0.160 Sum_probs=80.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-
Q 040533 176 VCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT- 254 (364)
Q Consensus 176 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~- 254 (364)
...+..++++.+++.+.....++-||--.. ..+.+. ......+..+.+.+++..+++ + ..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~-~W~~~~--~~~~~~l~~v~~~~dg~l~l~-g---~~G~l~~-S~d~G~~ 312 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP-YWQPHN--RASARRIQNMGWRADGGLWLL-T---RGGGLYV-SKGTGLT 312 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc-ceEEec--CCCccceeeeeEcCCCCEEEE-e---CCceEEE-ecCCCCc
Confidence 344566788877776654433334542110 001111 223456889999988854444 3 3565443 344443
Q ss_pred ----EEEEEec---CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc---ccccceeEEeecCCCCE
Q 040533 255 ----CIHSVDT---KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ---HQTSRILELSQSPDGLT 324 (364)
Q Consensus 255 ----~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~ 324 (364)
....... ...+..+.+.+++..+++|. .|.+... ...++.....+ .-....+.+.|.++++-
T Consensus 313 ~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~-------~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g 384 (398)
T PLN00033 313 EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG-------SGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKG 384 (398)
T ss_pred ccccceeecccCCCCcceEEEEEcCCCcEEEEEC-------CCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCce
Confidence 2222222 23488899999999888874 5555444 34444444332 22356789998777655
Q ss_pred EEEEeCCCcEEEE
Q 040533 325 VVSAAADETLRFW 337 (364)
Q Consensus 325 l~~~~~dg~i~vw 337 (364)
+++ +.+|.|.-|
T Consensus 385 ~~~-G~~G~il~~ 396 (398)
T PLN00033 385 FVL-GNDGVLLRY 396 (398)
T ss_pred EEE-eCCcEEEEe
Confidence 554 567776544
No 500
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=85.30 E-value=15 Score=28.16 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=45.1
Q ss_pred CeEEEEECCCCeEEEEE-ec---CCCeEEEEEcCCccc-eeeeccCCccCCCCeEEEeeCCCCceeeeccc
Q 040533 243 GCIKIWNVQKGTCIHSV-DT---KAQICGLEWNRHHKE-ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 243 ~~i~i~d~~~~~~~~~~-~~---~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
|.|++.|+.++...... .. ......+.|-.+..+ ++.|..+.+-+..|.++++++.+++.......
T Consensus 88 GkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 88 GKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred eeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeec
Confidence 77999998887765332 11 122345666665554 45566677788999999999999887665554
Done!