Query 040533
Match_columns 364
No_of_seqs 775 out of 1893
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 15:00:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gga_A P55CDC, cell division c 100.0 4.7E-55 1.6E-59 385.1 43.4 326 23-355 83-409 (420)
2 4ggc_A P55CDC, cell division c 100.0 4.9E-52 1.7E-56 352.4 43.2 314 23-343 3-317 (318)
3 4aez_A CDC20, WD repeat-contai 100.0 8E-50 2.7E-54 349.7 40.7 324 25-359 73-399 (401)
4 1vyh_C Platelet-activating fac 100.0 3.1E-49 1.1E-53 346.5 39.3 279 47-340 110-410 (410)
5 3ow8_A WD repeat-containing pr 100.0 5.4E-49 1.8E-53 333.5 37.5 280 47-340 34-320 (321)
6 2ynn_A Coatomer subunit beta'; 100.0 1.5E-48 5E-53 328.7 35.4 271 81-363 7-281 (304)
7 1got_B GT-beta; complex (GTP-b 100.0 1.8E-47 6.3E-52 327.2 42.0 274 48-338 58-340 (340)
8 1vyh_C Platelet-activating fac 100.0 1.4E-47 4.7E-52 336.0 36.4 269 81-363 102-391 (410)
9 3frx_A Guanine nucleotide-bind 100.0 1.3E-46 4.3E-51 319.0 38.5 279 48-342 20-318 (319)
10 2pbi_B Guanine nucleotide-bind 100.0 8.9E-46 3.1E-50 318.2 41.7 275 48-338 67-354 (354)
11 1nr0_A Actin interacting prote 100.0 1.7E-46 5.8E-51 345.4 39.1 304 47-363 149-592 (611)
12 4gqb_B Methylosome protein 50; 100.0 6.8E-47 2.3E-51 323.0 32.9 283 47-344 32-334 (344)
13 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.9E-46 1E-50 320.3 36.8 291 47-348 18-342 (345)
14 3iz6_a 40S ribosomal protein R 100.0 3E-46 1E-50 324.4 35.4 283 48-344 69-378 (380)
15 3ow8_A WD repeat-containing pr 100.0 3.7E-46 1.3E-50 316.1 34.6 268 82-363 27-301 (321)
16 2ynn_A Coatomer subunit beta'; 100.0 2.5E-45 8.6E-50 309.0 39.3 280 48-341 16-302 (304)
17 1nr0_A Actin interacting prote 100.0 1E-45 3.4E-50 340.3 39.9 299 47-363 20-378 (611)
18 1got_B GT-beta; complex (GTP-b 100.0 1.7E-45 5.8E-50 315.0 37.2 270 80-363 48-323 (340)
19 4g56_B MGC81050 protein; prote 100.0 4.5E-46 1.5E-50 320.3 32.4 288 46-346 43-348 (357)
20 2hes_X YDR267CP; beta-propelle 100.0 2.1E-45 7.3E-50 313.0 34.3 283 48-341 17-328 (330)
21 2xzm_R RACK1; ribosome, transl 100.0 8.7E-45 3E-49 311.0 38.0 279 48-342 24-341 (343)
22 2pbi_B Guanine nucleotide-bind 100.0 2.9E-44 9.9E-49 308.8 37.3 271 81-363 58-337 (354)
23 4ery_A WD repeat-containing pr 100.0 2.9E-44 9.9E-49 303.9 36.7 271 79-363 15-290 (312)
24 4gqb_B Methylosome protein 50; 100.0 3.7E-45 1.3E-49 312.2 30.6 264 85-363 28-310 (344)
25 1erj_A Transcriptional repress 100.0 7.5E-44 2.6E-48 310.8 38.8 281 47-342 66-390 (393)
26 4g56_B MGC81050 protein; prote 100.0 1.4E-45 4.8E-50 317.2 27.3 295 49-363 9-322 (357)
27 4ery_A WD repeat-containing pr 100.0 5.9E-43 2E-47 295.9 42.1 278 47-340 25-311 (312)
28 2pm9_A Protein WEB1, protein t 100.0 3.4E-45 1.2E-49 321.9 29.1 290 47-347 14-343 (416)
29 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.4E-44 1.8E-48 306.2 35.8 275 79-363 7-314 (345)
30 4aow_A Guanine nucleotide-bind 100.0 2.8E-43 9.7E-48 301.3 39.7 284 47-344 40-340 (340)
31 2ymu_A WD-40 repeat protein; u 100.0 3.2E-43 1.1E-47 322.2 40.8 294 47-363 264-560 (577)
32 3zwl_B Eukaryotic translation 100.0 1.7E-42 6E-47 299.5 39.8 302 30-348 19-353 (369)
33 3dm0_A Maltose-binding peripla 100.0 4.9E-43 1.7E-47 327.3 38.6 279 48-340 385-692 (694)
34 3iz6_a 40S ribosomal protein R 100.0 2.9E-44 1E-48 311.9 27.6 272 80-363 59-355 (380)
35 1sq9_A Antiviral protein SKI8; 100.0 5.8E-43 2E-47 305.9 33.6 282 47-343 18-397 (397)
36 1erj_A Transcriptional repress 100.0 2.9E-42 1E-46 300.7 37.9 263 85-362 62-362 (393)
37 4e54_B DNA damage-binding prot 100.0 2.3E-43 7.9E-48 311.9 30.7 292 47-345 121-434 (435)
38 2hes_X YDR267CP; beta-propelle 100.0 2.5E-42 8.4E-47 294.1 34.9 270 80-362 7-305 (330)
39 3frx_A Guanine nucleotide-bind 100.0 5.1E-42 1.7E-46 290.7 36.1 269 79-363 9-297 (319)
40 2ymu_A WD-40 repeat protein; u 100.0 9.9E-42 3.4E-46 312.4 40.7 294 47-363 223-519 (577)
41 3vl1_A 26S proteasome regulato 100.0 1.8E-42 6.2E-47 305.0 34.4 298 48-363 59-396 (420)
42 1gxr_A ESG1, transducin-like e 100.0 2.5E-42 8.7E-47 294.9 34.2 298 48-363 12-317 (337)
43 2xzm_R RACK1; ribosome, transl 100.0 7.3E-42 2.5E-46 292.9 37.0 270 80-363 14-320 (343)
44 1r5m_A SIR4-interacting protei 100.0 1.9E-42 6.3E-47 305.0 32.0 300 47-363 47-405 (425)
45 3ei3_B DNA damage-binding prot 100.0 7.1E-42 2.4E-46 297.6 35.2 278 47-341 75-382 (383)
46 1k8k_C P40, ARP2/3 complex 41 100.0 7.2E-42 2.5E-46 296.2 34.3 286 47-343 10-363 (372)
47 1gxr_A ESG1, transducin-like e 100.0 5.8E-41 2E-45 286.5 39.2 278 47-340 53-336 (337)
48 3i2n_A WD repeat-containing pr 100.0 5.2E-42 1.8E-46 295.4 30.5 283 47-344 20-356 (357)
49 2pm7_B Protein transport prote 100.0 3.2E-41 1.1E-45 283.0 34.4 251 82-341 4-285 (297)
50 3k26_A Polycomb protein EED; W 100.0 3.8E-42 1.3E-46 297.1 29.7 282 47-340 20-365 (366)
51 3v7d_B Cell division control p 100.0 5.3E-41 1.8E-45 299.5 37.2 295 48-363 125-444 (464)
52 1sq9_A Antiviral protein SKI8; 100.0 1E-40 3.5E-45 291.6 33.7 270 81-363 10-365 (397)
53 1pgu_A Actin interacting prote 100.0 2.2E-40 7.5E-45 305.6 36.4 299 44-363 17-349 (615)
54 3zwl_B Eukaryotic translation 100.0 1.1E-39 3.7E-44 282.0 38.2 277 74-363 19-326 (369)
55 1r5m_A SIR4-interacting protei 100.0 3.2E-40 1.1E-44 290.7 34.4 275 47-340 110-424 (425)
56 3dwl_C Actin-related protein 2 100.0 4.1E-42 1.4E-46 298.5 21.8 281 47-339 13-377 (377)
57 3odt_A Protein DOA1; ubiquitin 100.0 2.4E-39 8.1E-44 273.7 38.1 277 48-349 21-304 (313)
58 3bg1_A Protein SEC13 homolog; 100.0 2.8E-41 9.7E-46 285.7 26.2 252 83-342 9-294 (316)
59 3ei3_B DNA damage-binding prot 100.0 4.3E-40 1.5E-44 286.4 33.0 266 82-363 68-363 (383)
60 1k8k_C P40, ARP2/3 complex 41 100.0 9.3E-40 3.2E-44 282.9 34.3 246 85-341 6-274 (372)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.2E-39 7.4E-44 287.5 37.3 288 48-363 122-418 (445)
62 1pgu_A Actin interacting prote 100.0 2.5E-39 8.6E-44 298.5 38.5 299 48-363 67-595 (615)
63 3mkq_A Coatomer beta'-subunit; 100.0 2.2E-39 7.6E-44 308.4 39.2 280 48-342 16-303 (814)
64 2j04_B YDR362CP, TAU91; beta p 100.0 3.8E-41 1.3E-45 301.3 25.4 283 63-363 181-494 (524)
65 3sfz_A APAF-1, apoptotic pepti 100.0 7.4E-40 2.5E-44 324.7 37.0 310 47-363 617-1055(1249)
66 4aow_A Guanine nucleotide-bind 100.0 2.9E-39 1E-43 276.3 35.7 284 66-363 17-317 (340)
67 3mkq_A Coatomer beta'-subunit; 100.0 4.8E-40 1.6E-44 312.9 33.7 271 81-363 7-281 (814)
68 3i2n_A WD repeat-containing pr 100.0 5.2E-40 1.8E-44 282.9 30.5 269 83-363 14-332 (357)
69 3odt_A Protein DOA1; ubiquitin 100.0 4E-39 1.4E-43 272.2 34.9 264 79-363 10-277 (313)
70 2pm9_A Protein WEB1, protein t 100.0 1.1E-40 3.8E-45 293.1 25.6 266 88-363 13-316 (416)
71 1p22_A F-BOX/WD-repeat protein 100.0 2E-39 6.8E-44 286.8 33.5 287 48-362 136-434 (435)
72 2oaj_A Protein SNI1; WD40 repe 100.0 6.1E-40 2.1E-44 312.4 31.4 303 47-363 60-586 (902)
73 3dwl_C Actin-related protein 2 100.0 8.3E-41 2.8E-45 290.2 22.6 245 85-340 9-280 (377)
74 3gre_A Serine/threonine-protei 100.0 5.8E-40 2E-44 290.5 28.1 277 47-338 65-437 (437)
75 3vl1_A 26S proteasome regulato 100.0 2.8E-39 9.6E-44 284.6 31.6 275 51-341 103-419 (420)
76 2aq5_A Coronin-1A; WD40 repeat 100.0 1.3E-39 4.5E-44 285.1 28.6 283 48-343 37-344 (402)
77 3f3f_A Nucleoporin SEH1; struc 100.0 7.1E-39 2.4E-43 274.5 32.6 259 83-349 7-345 (351)
78 3dw8_B Serine/threonine-protei 100.0 9.2E-40 3.2E-44 290.0 27.5 247 85-344 26-376 (447)
79 4a11_B DNA excision repair pro 100.0 4.4E-38 1.5E-42 275.7 37.4 289 47-348 45-372 (408)
80 3dm0_A Maltose-binding peripla 100.0 5.1E-39 1.7E-43 300.3 33.3 270 82-363 377-673 (694)
81 3dw8_B Serine/threonine-protei 100.0 9.3E-39 3.2E-43 283.6 33.0 284 42-339 25-444 (447)
82 2oaj_A Protein SNI1; WD40 repe 100.0 9E-39 3.1E-43 304.4 33.9 304 47-363 19-499 (902)
83 3jrp_A Fusion protein of prote 100.0 2.1E-38 7.2E-43 275.0 32.9 251 82-342 6-288 (379)
84 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-38 5.7E-43 315.0 35.7 302 47-363 800-1138(1249)
85 3k26_A Polycomb protein EED; W 100.0 1.6E-39 5.4E-44 280.7 24.7 264 84-363 15-346 (366)
86 4h5i_A Guanine nucleotide-exch 100.0 4.6E-39 1.6E-43 277.3 27.4 281 46-342 15-344 (365)
87 4e54_B DNA damage-binding prot 100.0 1.7E-39 5.9E-44 287.1 24.3 268 83-363 115-411 (435)
88 2j04_B YDR362CP, TAU91; beta p 100.0 6.7E-40 2.3E-44 293.3 21.8 275 48-341 210-517 (524)
89 3gre_A Serine/threonine-protei 100.0 6.6E-39 2.2E-43 283.8 27.7 276 69-363 47-418 (437)
90 1yfq_A Cell cycle arrest prote 100.0 9.7E-39 3.3E-43 273.4 27.7 260 84-359 8-301 (342)
91 2xyi_A Probable histone-bindin 100.0 5.9E-38 2E-42 276.8 31.3 252 82-342 123-411 (430)
92 1yfq_A Cell cycle arrest prote 100.0 1.5E-37 5.1E-42 266.0 32.9 273 47-338 13-321 (342)
93 2pm7_B Protein transport prote 100.0 3.6E-37 1.2E-41 258.4 33.0 243 48-299 12-285 (297)
94 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1E-36 3.5E-41 270.3 37.5 269 48-342 162-443 (445)
95 3bg1_A Protein SEC13 homolog; 100.0 2.3E-38 8E-43 267.9 25.0 243 47-298 15-292 (316)
96 3mmy_A MRNA export factor; mRN 100.0 8.6E-37 3E-41 263.7 33.6 266 80-363 32-326 (368)
97 4aez_A CDC20, WD repeat-contai 100.0 9E-37 3.1E-41 266.9 33.4 269 80-363 84-360 (401)
98 3mmy_A MRNA export factor; mRN 100.0 1.9E-36 6.6E-41 261.5 33.7 284 47-346 41-351 (368)
99 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.3E-36 1.5E-40 266.6 36.0 281 48-342 7-392 (450)
100 1p22_A F-BOX/WD-repeat protein 100.0 1.9E-36 6.5E-41 267.7 33.0 257 84-363 130-396 (435)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 1.3E-36 4.3E-41 266.2 31.4 267 88-363 35-324 (402)
102 4a11_B DNA excision repair pro 100.0 4.9E-37 1.7E-41 269.1 28.5 285 64-363 22-345 (408)
103 3v7d_B Cell division control p 100.0 1E-35 3.5E-40 265.3 37.0 271 47-339 164-461 (464)
104 2j04_A TAU60, YPL007P, hypothe 100.0 2.3E-37 7.8E-42 270.9 24.8 257 47-339 17-295 (588)
105 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.9E-36 2.4E-40 265.2 32.9 262 88-363 5-365 (450)
106 3jro_A Fusion protein of prote 100.0 1.1E-36 3.9E-41 286.1 28.8 251 82-343 4-287 (753)
107 1l0q_A Surface layer protein; 100.0 5.5E-35 1.9E-39 254.8 36.6 280 58-354 5-288 (391)
108 4gga_A P55CDC, cell division c 100.0 4.8E-35 1.6E-39 257.5 35.2 260 89-363 107-375 (420)
109 3bws_A Protein LP49; two-domai 100.0 9.3E-35 3.2E-39 256.8 36.2 284 48-341 125-432 (433)
110 4h5i_A Guanine nucleotide-exch 100.0 1.4E-35 4.8E-40 255.6 29.5 264 87-363 14-323 (365)
111 3jrp_A Fusion protein of prote 100.0 5.2E-35 1.8E-39 253.6 29.9 246 48-302 14-290 (379)
112 4ggc_A P55CDC, cell division c 100.0 1E-33 3.5E-38 239.6 35.1 259 90-363 28-295 (318)
113 3f3f_A Nucleoporin SEH1; struc 100.0 4.5E-34 1.5E-38 244.6 31.4 250 47-306 13-344 (351)
114 3lrv_A PRE-mRNA-splicing facto 100.0 9.2E-35 3.2E-39 248.8 25.5 261 56-339 49-331 (343)
115 4gq1_A NUP37; propeller, trans 100.0 3.6E-34 1.2E-38 249.4 29.5 275 56-341 31-389 (393)
116 3jro_A Fusion protein of prote 100.0 1.2E-34 4.2E-39 272.3 27.2 244 47-299 11-285 (753)
117 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.9E-34 1.7E-38 250.0 29.0 300 48-363 65-408 (415)
118 3vu4_A KMHSV2; beta-propeller 100.0 7.6E-33 2.6E-37 237.8 35.6 277 47-346 21-341 (355)
119 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-34 3.9E-39 248.2 23.1 232 95-345 44-296 (343)
120 2j04_A TAU60, YPL007P, hypothe 100.0 9.3E-35 3.2E-39 254.5 21.9 243 85-363 13-278 (588)
121 2xyi_A Probable histone-bindin 100.0 1.2E-33 4E-38 249.3 29.2 243 47-299 130-410 (430)
122 3vu4_A KMHSV2; beta-propeller 100.0 6.6E-33 2.2E-37 238.2 32.1 250 69-343 3-273 (355)
123 3bws_A Protein LP49; two-domai 100.0 8.7E-33 3E-37 244.2 31.6 284 66-363 102-411 (433)
124 2w18_A PALB2, fancn, partner a 100.0 7.6E-32 2.6E-36 222.2 30.8 285 38-339 32-355 (356)
125 4gq1_A NUP37; propeller, trans 100.0 3.6E-33 1.2E-37 243.2 21.3 265 87-363 15-370 (393)
126 1l0q_A Surface layer protein; 100.0 4.7E-30 1.6E-34 223.6 33.2 247 100-363 3-254 (391)
127 1nir_A Nitrite reductase; hemo 100.0 5.7E-29 2E-33 224.3 36.4 297 52-363 144-489 (543)
128 2ecf_A Dipeptidyl peptidase IV 100.0 4.7E-29 1.6E-33 235.0 31.7 300 48-363 39-435 (741)
129 1ri6_A Putative isomerase YBHE 100.0 1.9E-28 6.4E-33 209.5 30.0 289 62-363 12-333 (343)
130 3u4y_A Uncharacterized protein 100.0 5.5E-28 1.9E-32 205.7 32.4 273 58-343 13-306 (331)
131 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.2E-27 4E-32 209.6 33.7 248 57-323 145-410 (415)
132 1xfd_A DIP, dipeptidyl aminope 100.0 8.9E-29 3E-33 232.4 28.2 303 48-363 19-420 (723)
133 1nir_A Nitrite reductase; hemo 100.0 6.6E-28 2.3E-32 217.4 32.4 293 48-350 181-523 (543)
134 2ojh_A Uncharacterized protein 100.0 2.9E-28 1E-32 203.7 24.9 261 62-332 19-293 (297)
135 2w18_A PALB2, fancn, partner a 100.0 2E-27 6.7E-32 196.0 26.9 262 90-363 42-337 (356)
136 2z3z_A Dipeptidyl aminopeptida 100.0 5E-27 1.7E-31 220.0 29.5 281 47-343 83-437 (706)
137 1pby_B Quinohemoprotein amine 100.0 1.1E-26 3.8E-31 197.9 28.2 272 58-351 4-320 (337)
138 3vgz_A Uncharacterized protein 100.0 8.5E-26 2.9E-30 193.8 33.3 268 48-332 43-335 (353)
139 2z3z_A Dipeptidyl aminopeptida 100.0 9E-27 3.1E-31 218.2 27.4 299 48-363 28-411 (706)
140 3hfq_A Uncharacterized protein 100.0 1.1E-25 3.9E-30 192.7 30.8 268 64-341 15-317 (347)
141 2ecf_A Dipeptidyl peptidase IV 100.0 2.5E-26 8.7E-31 216.3 26.6 264 87-363 36-390 (741)
142 2ojh_A Uncharacterized protein 100.0 2E-26 6.8E-31 192.5 22.2 245 105-363 18-282 (297)
143 3vgz_A Uncharacterized protein 100.0 4.5E-25 1.5E-29 189.3 31.0 260 87-363 40-324 (353)
144 1k32_A Tricorn protease; prote 99.9 1.5E-25 5.1E-30 218.1 29.2 294 47-363 54-431 (1045)
145 3scy_A Hypothetical bacterial 99.9 4.1E-24 1.4E-28 184.0 34.2 286 64-362 26-361 (361)
146 3u4y_A Uncharacterized protein 99.9 1.1E-24 3.6E-29 185.4 28.8 237 94-344 4-255 (331)
147 1k32_A Tricorn protease; prote 99.9 1.6E-25 5.6E-30 217.8 26.6 258 84-363 200-482 (1045)
148 1ri6_A Putative isomerase YBHE 99.9 6.2E-24 2.1E-28 181.4 31.1 264 48-322 40-334 (343)
149 2oit_A Nucleoporin 214KDA; NH2 99.9 9.6E-24 3.3E-28 185.4 30.0 212 34-253 25-279 (434)
150 1jmx_B Amine dehydrogenase; ox 99.9 6.3E-25 2.2E-29 188.1 22.0 242 92-351 4-335 (349)
151 1xfd_A DIP, dipeptidyl aminope 99.9 2.3E-25 7.7E-30 209.3 20.5 268 88-363 17-370 (723)
152 1z68_A Fibroblast activation p 99.9 3.4E-25 1.2E-29 207.9 20.9 303 49-363 19-420 (719)
153 1jof_A Carboxy-CIS,CIS-muconat 99.9 7.5E-23 2.6E-27 176.3 31.2 273 65-342 14-342 (365)
154 3o4h_A Acylamino-acid-releasin 99.9 2.2E-24 7.5E-29 197.5 22.4 249 87-361 21-291 (582)
155 3pe7_A Oligogalacturonate lyas 99.9 9.1E-23 3.1E-27 177.3 29.6 286 47-342 37-383 (388)
156 3hfq_A Uncharacterized protein 99.9 2.1E-22 7.1E-27 172.4 29.8 248 48-303 42-323 (347)
157 1pby_B Quinohemoprotein amine 99.9 6.1E-23 2.1E-27 174.7 23.6 245 100-363 2-290 (337)
158 2oit_A Nucleoporin 214KDA; NH2 99.9 4.2E-23 1.4E-27 181.3 21.9 218 65-300 23-279 (434)
159 3o4h_A Acylamino-acid-releasin 99.9 5.2E-23 1.8E-27 188.4 23.4 262 48-340 24-314 (582)
160 1jmx_B Amine dehydrogenase; ox 99.9 1.1E-21 3.7E-26 167.9 29.7 238 52-309 6-335 (349)
161 4a5s_A Dipeptidyl peptidase 4 99.9 5.6E-22 1.9E-26 186.3 25.8 277 48-344 19-356 (740)
162 3scy_A Hypothetical bacterial 99.9 1.3E-20 4.5E-25 162.1 31.7 261 48-319 52-360 (361)
163 3fvz_A Peptidyl-glycine alpha- 99.9 5.8E-20 2E-24 155.8 34.5 249 87-343 23-324 (329)
164 3pe7_A Oligogalacturonate lyas 99.9 5E-22 1.7E-26 172.7 20.9 284 70-363 15-361 (388)
165 3c5m_A Oligogalacturonate lyas 99.9 1.3E-20 4.3E-25 164.2 26.5 283 47-341 37-382 (396)
166 2oiz_A Aromatic amine dehydrog 99.9 7.6E-21 2.6E-25 163.1 24.3 283 64-363 30-358 (361)
167 1z68_A Fibroblast activation p 99.9 3E-21 1E-25 181.2 22.3 289 48-344 62-446 (719)
168 1q7f_A NHL, brain tumor CG1071 99.9 4.6E-19 1.6E-23 147.3 32.1 241 85-344 27-283 (286)
169 3azo_A Aminopeptidase; POP fam 99.9 4.4E-20 1.5E-24 171.7 24.8 282 47-343 25-371 (662)
170 2dg1_A DRP35, lactonase; beta 99.9 1.6E-18 5.6E-23 147.3 31.3 264 48-331 8-300 (333)
171 3azo_A Aminopeptidase; POP fam 99.9 1.8E-19 6.3E-24 167.5 25.6 270 83-362 19-346 (662)
172 4a5s_A Dipeptidyl peptidase 4 99.9 1.3E-20 4.3E-25 177.1 17.6 254 88-363 17-329 (740)
173 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.2E-19 1.1E-23 153.6 24.4 243 48-300 42-342 (365)
174 2oiz_A Aromatic amine dehydrog 99.9 1.7E-18 5.9E-23 148.4 28.5 262 50-323 54-360 (361)
175 2gop_A Trilobed protease; beta 99.8 1.7E-18 5.7E-23 148.1 28.2 254 64-354 42-342 (347)
176 3c5m_A Oligogalacturonate lyas 99.8 6.6E-20 2.3E-24 159.6 19.8 282 68-363 13-361 (396)
177 1qks_A Cytochrome CD1 nitrite 99.8 1.4E-16 4.7E-21 143.5 38.4 289 61-363 173-513 (567)
178 2xdw_A Prolyl endopeptidase; a 99.8 4.1E-18 1.4E-22 159.5 29.3 267 66-343 99-416 (710)
179 3dsm_A Uncharacterized protein 99.8 2.1E-17 7.1E-22 139.9 29.5 276 64-360 16-319 (328)
180 2gop_A Trilobed protease; beta 99.8 1.8E-17 6.2E-22 141.6 27.6 246 88-362 15-311 (347)
181 3e5z_A Putative gluconolactona 99.8 3.9E-17 1.3E-21 136.4 28.6 236 85-343 25-288 (296)
182 2dg1_A DRP35, lactonase; beta 99.8 9.1E-18 3.1E-22 142.7 24.4 261 87-363 5-290 (333)
183 1rwi_B Serine/threonine-protei 99.8 3.9E-17 1.3E-21 134.4 26.3 242 89-345 25-268 (270)
184 3no2_A Uncharacterized protein 99.8 8.5E-17 2.9E-21 132.3 27.0 233 98-349 4-260 (276)
185 2bkl_A Prolyl endopeptidase; m 99.8 1E-17 3.5E-22 156.3 23.9 263 66-343 95-399 (695)
186 1q7f_A NHL, brain tumor CG1071 99.8 2.6E-16 8.8E-21 130.7 29.2 234 48-301 32-282 (286)
187 2z2n_A Virginiamycin B lyase; 99.8 1.6E-14 5.3E-19 120.5 38.1 271 48-342 17-296 (299)
188 1qks_A Cytochrome CD1 nitrite 99.8 2.5E-15 8.4E-20 135.4 34.4 290 49-349 200-546 (567)
189 3fvz_A Peptidyl-glycine alpha- 99.8 2.9E-16 1E-20 133.0 26.7 220 66-299 70-322 (329)
190 2xdw_A Prolyl endopeptidase; a 99.8 1.4E-15 4.9E-20 142.2 32.9 244 47-301 126-416 (710)
191 2z2n_A Virginiamycin B lyase; 99.8 1.7E-14 5.8E-19 120.3 33.8 259 83-360 10-274 (299)
192 1pjx_A Dfpase, DIISOPROPYLFLUO 99.8 3.1E-15 1.1E-19 125.8 29.4 241 85-342 15-300 (314)
193 3e5z_A Putative gluconolactona 99.7 1.1E-15 3.9E-20 127.5 25.2 228 119-362 17-266 (296)
194 3sjl_D Methylamine dehydrogena 99.7 2.1E-15 7.3E-20 127.7 26.3 283 64-363 58-384 (386)
195 2qc5_A Streptogramin B lactona 99.7 1.6E-13 5.3E-18 114.5 36.6 271 48-339 22-298 (300)
196 2bkl_A Prolyl endopeptidase; m 99.7 1.2E-15 4E-20 142.5 25.3 259 96-362 76-372 (695)
197 3dsm_A Uncharacterized protein 99.7 5.2E-15 1.8E-19 125.2 26.8 244 107-362 15-276 (328)
198 2mad_H Methylamine dehydrogena 99.7 1.1E-13 3.6E-18 118.8 34.5 264 66-348 48-357 (373)
199 1rwi_B Serine/threonine-protei 99.7 4.8E-15 1.6E-19 121.9 25.2 239 47-302 25-267 (270)
200 2qc5_A Streptogramin B lactona 99.7 2.1E-13 7.3E-18 113.7 33.9 259 84-362 16-281 (300)
201 1yr2_A Prolyl oligopeptidase; 99.7 5E-15 1.7E-19 139.2 26.2 246 86-343 161-443 (741)
202 3no2_A Uncharacterized protein 99.7 3E-14 1E-18 117.1 27.3 211 54-280 3-230 (276)
203 1yr2_A Prolyl oligopeptidase; 99.7 1.6E-14 5.6E-19 135.7 26.9 243 46-301 163-443 (741)
204 3hrp_A Uncharacterized protein 99.7 1.4E-13 4.9E-18 119.7 30.0 238 88-339 131-408 (409)
205 3c75_H MADH, methylamine dehyd 99.7 6.4E-14 2.2E-18 120.9 26.5 270 65-348 99-409 (426)
206 3g4e_A Regucalcin; six bladed 99.7 5.6E-13 1.9E-17 111.1 29.9 227 87-330 12-261 (297)
207 2mad_H Methylamine dehydrogena 99.7 1.3E-12 4.4E-17 112.1 32.7 245 50-306 70-357 (373)
208 3sjl_D Methylamine dehydrogena 99.7 1.7E-13 5.8E-18 116.1 26.6 259 51-321 83-384 (386)
209 2ghs_A AGR_C_1268P; regucalcin 99.6 2.4E-12 8.4E-17 108.7 29.3 221 90-331 51-292 (326)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 8.5E-13 2.9E-17 110.8 26.3 220 128-363 16-278 (314)
211 3iuj_A Prolyl endopeptidase; h 99.6 1.5E-13 5.2E-18 128.0 23.2 245 85-343 126-407 (693)
212 1xip_A Nucleoporin NUP159; bet 99.6 5.3E-14 1.8E-18 119.7 17.7 174 47-236 39-231 (388)
213 3dr2_A Exported gluconolactona 99.6 1.7E-12 5.7E-17 108.6 26.6 227 85-333 42-299 (305)
214 1xip_A Nucleoporin NUP159; bet 99.6 7.1E-14 2.4E-18 118.9 17.9 173 131-328 39-231 (388)
215 3g4e_A Regucalcin; six bladed 99.6 2.9E-12 1E-16 106.7 27.2 224 128-363 11-252 (297)
216 3c75_H MADH, methylamine dehyd 99.6 2.3E-12 7.8E-17 111.2 23.7 246 50-306 122-409 (426)
217 3hrp_A Uncharacterized protein 99.5 1.6E-11 5.4E-16 106.8 28.2 231 48-297 133-408 (409)
218 1mda_H Methylamine dehydrogena 99.5 2.1E-12 7.3E-17 109.6 21.7 273 66-362 47-366 (368)
219 2ghs_A AGR_C_1268P; regucalcin 99.5 1.2E-11 4.3E-16 104.3 25.6 219 131-363 50-282 (326)
220 2ece_A 462AA long hypothetical 99.5 8E-11 2.7E-15 100.6 28.7 253 66-329 44-399 (462)
221 3dr2_A Exported gluconolactona 99.5 2.1E-11 7.2E-16 101.9 24.2 218 48-281 47-295 (305)
222 1npe_A Nidogen, entactin; glyc 99.5 4.6E-10 1.6E-14 91.8 31.1 249 59-323 4-263 (267)
223 1kb0_A Quinohemoprotein alcoho 99.5 1.4E-11 4.6E-16 114.0 24.3 284 56-350 78-516 (677)
224 3iuj_A Prolyl endopeptidase; h 99.5 2.6E-11 8.8E-16 113.0 25.4 256 33-302 114-408 (693)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.4 4.5E-10 1.5E-14 96.8 30.2 268 56-350 54-346 (376)
226 2qe8_A Uncharacterized protein 99.4 6E-11 2.1E-15 100.9 24.0 236 88-337 17-317 (343)
227 1kb0_A Quinohemoprotein alcoho 99.4 7.4E-11 2.5E-15 109.1 26.3 274 56-341 129-567 (677)
228 1mda_H Methylamine dehydrogena 99.4 1.5E-11 5.1E-16 104.4 19.0 253 50-320 69-366 (368)
229 1yiq_A Quinohemoprotein alcoho 99.4 7.7E-11 2.6E-15 109.2 25.1 285 56-351 71-515 (689)
230 3q7m_A Lipoprotein YFGL, BAMB; 99.4 4.5E-10 1.5E-14 96.8 27.7 257 56-338 104-375 (376)
231 1yiq_A Quinohemoprotein alcoho 99.4 9.5E-11 3.2E-15 108.6 24.8 262 56-328 122-536 (689)
232 1fwx_A Nitrous oxide reductase 99.4 3.7E-11 1.3E-15 106.2 20.3 247 64-343 111-433 (595)
233 2hz6_A Endoplasmic reticulum t 99.4 3.1E-13 1.1E-17 116.0 6.4 188 98-307 8-200 (369)
234 2ece_A 462AA long hypothetical 99.4 3.8E-10 1.3E-14 96.4 24.3 218 58-281 98-399 (462)
235 3hxj_A Pyrrolo-quinoline quino 99.4 2.6E-10 9E-15 96.3 23.5 263 49-343 63-326 (330)
236 1npe_A Nidogen, entactin; glyc 99.4 3.5E-09 1.2E-13 86.5 28.6 251 99-363 1-261 (267)
237 2qe8_A Uncharacterized protein 99.3 4.8E-10 1.6E-14 95.3 23.1 230 48-281 19-309 (343)
238 3hxj_A Pyrrolo-quinoline quino 99.3 8.5E-11 2.9E-15 99.3 15.8 260 56-349 31-291 (330)
239 2hz6_A Endoplasmic reticulum t 99.3 2.9E-12 9.9E-17 110.0 5.8 188 141-349 8-200 (369)
240 2fp8_A Strictosidine synthase; 99.3 2.2E-08 7.5E-13 84.2 29.5 244 85-341 16-313 (322)
241 2iwa_A Glutamine cyclotransfer 99.2 1.5E-08 5E-13 81.5 24.2 206 119-343 9-239 (266)
242 1kv9_A Type II quinohemoprotei 99.2 1.1E-08 3.6E-13 94.7 26.7 263 56-329 118-520 (668)
243 2p4o_A Hypothetical protein; p 99.2 7.7E-08 2.6E-12 80.2 27.8 228 88-332 32-279 (306)
244 1kv9_A Type II quinohemoprotei 99.2 1E-08 3.6E-13 94.7 23.9 284 56-350 67-497 (668)
245 3v64_C Agrin; beta propeller, 99.2 3.6E-07 1.2E-11 77.6 31.3 255 90-359 36-293 (349)
246 3v65_B Low-density lipoprotein 99.2 2.9E-07 1E-11 79.3 30.9 255 90-359 79-336 (386)
247 2iwa_A Glutamine cyclotransfer 99.1 4.8E-08 1.6E-12 78.5 23.8 194 47-253 22-238 (266)
248 2ad6_A Methanol dehydrogenase 99.1 4.6E-08 1.6E-12 88.6 26.6 283 56-350 63-503 (571)
249 3v64_C Agrin; beta propeller, 99.1 5.9E-07 2E-11 76.2 31.0 240 51-307 39-283 (349)
250 3v65_B Low-density lipoprotein 99.1 3.5E-07 1.2E-11 78.7 29.9 249 54-318 85-337 (386)
251 1w6s_A Methanol dehydrogenase 99.1 1.1E-07 3.7E-12 86.2 27.3 285 56-350 63-512 (599)
252 1fwx_A Nitrous oxide reductase 99.1 1.5E-08 5.2E-13 89.8 20.3 190 141-341 100-361 (595)
253 4a2l_A BT_4663, two-component 99.1 2E-06 6.8E-11 81.6 36.4 269 48-342 265-572 (795)
254 1ijq_A LDL receptor, low-densi 99.1 1.9E-06 6.5E-11 72.0 32.3 233 58-307 3-246 (316)
255 3p5b_L Low density lipoprotein 99.1 5.1E-06 1.7E-10 71.8 35.0 247 55-317 82-338 (400)
256 1flg_A Protein (quinoprotein e 99.1 3.8E-07 1.3E-11 82.8 28.3 286 56-350 69-525 (582)
257 4a2l_A BT_4663, two-component 99.0 3.3E-06 1.1E-10 80.1 36.0 272 48-343 217-528 (795)
258 3mbr_X Glutamine cyclotransfer 99.0 1.1E-07 3.6E-12 75.0 21.4 195 32-238 7-223 (243)
259 1ijq_A LDL receptor, low-densi 99.0 2.9E-06 1E-10 70.9 31.6 236 101-350 3-247 (316)
260 3nol_A Glutamine cyclotransfer 99.0 2.6E-07 9E-12 73.3 23.4 189 120-331 32-245 (262)
261 3nol_A Glutamine cyclotransfer 99.0 2.1E-07 7.2E-12 73.9 21.9 178 89-281 44-243 (262)
262 2ad6_A Methanol dehydrogenase 99.0 5.6E-07 1.9E-11 81.5 27.4 259 56-327 116-523 (571)
263 3sov_A LRP-6, low-density lipo 99.0 1.9E-06 6.4E-11 72.0 28.2 238 101-350 6-247 (318)
264 3p5b_L Low density lipoprotein 99.0 8.8E-06 3E-10 70.3 32.6 247 100-358 84-337 (400)
265 3nok_A Glutaminyl cyclase; bet 99.0 3.1E-07 1.1E-11 72.9 21.1 190 120-330 44-254 (268)
266 3v9f_A Two-component system se 99.0 3.2E-06 1.1E-10 80.0 32.0 276 48-341 213-524 (781)
267 3sov_A LRP-6, low-density lipo 99.0 2.7E-06 9.3E-11 71.0 27.8 237 56-307 4-246 (318)
268 3nok_A Glutaminyl cyclase; bet 98.9 3.3E-07 1.1E-11 72.8 20.4 177 88-280 55-252 (268)
269 3qqz_A Putative uncharacterize 98.9 4.8E-06 1.7E-10 66.5 27.4 204 82-297 21-251 (255)
270 1flg_A Protein (quinoprotein e 98.9 9.5E-07 3.2E-11 80.2 26.1 262 56-328 118-547 (582)
271 2fp8_A Strictosidine synthase; 98.9 2.9E-06 1E-10 71.2 27.6 237 48-299 21-313 (322)
272 1k3i_A Galactose oxidase precu 98.9 3E-07 1E-11 85.1 21.3 260 66-330 220-530 (656)
273 3mbr_X Glutamine cyclotransfer 98.9 3E-06 1E-10 66.7 23.8 190 120-330 10-223 (243)
274 1w6s_A Methanol dehydrogenase 98.9 3E-06 1E-10 76.9 27.0 258 58-328 124-534 (599)
275 3v9f_A Two-component system se 98.9 2.7E-05 9.1E-10 73.7 34.2 274 49-344 166-481 (781)
276 3tc9_A Hypothetical hydrolase; 98.8 7.4E-06 2.5E-10 71.5 27.9 237 89-340 138-429 (430)
277 4a0p_A LRP6, LRP-6, low-densit 98.8 5.4E-05 1.8E-09 69.3 34.3 232 56-302 6-240 (628)
278 2xbg_A YCF48-like protein; pho 98.8 3.2E-05 1.1E-09 64.9 32.0 269 47-338 37-319 (327)
279 4hw6_A Hypothetical protein, I 98.8 1.3E-05 4.4E-10 70.0 28.6 239 88-340 139-432 (433)
280 3m0c_C LDL receptor, low-densi 98.8 3.4E-05 1.1E-09 72.3 31.6 234 57-306 396-639 (791)
281 2xe4_A Oligopeptidase B; hydro 98.8 1.6E-06 5.5E-11 81.4 23.0 196 89-297 175-398 (751)
282 2xe4_A Oligopeptidase B; hydro 98.8 1.1E-06 3.7E-11 82.6 21.8 242 47-301 175-460 (751)
283 3tc9_A Hypothetical hydrolase; 98.8 7.9E-06 2.7E-10 71.3 25.8 149 49-203 140-300 (430)
284 1k3i_A Galactose oxidase precu 98.8 1.5E-06 5.1E-11 80.5 21.7 249 91-343 189-499 (656)
285 2p4o_A Hypothetical protein; p 98.8 1.3E-05 4.6E-10 66.6 25.5 223 47-281 33-276 (306)
286 1n7d_A LDL receptor, low-densi 98.7 1.9E-07 6.6E-12 86.6 15.0 246 58-319 379-634 (699)
287 3qqz_A Putative uncharacterize 98.7 4.4E-05 1.5E-09 60.9 26.8 204 124-338 21-250 (255)
288 4a0p_A LRP6, LRP-6, low-densit 98.7 8.6E-05 2.9E-09 67.9 32.0 246 100-358 7-254 (628)
289 4hw6_A Hypothetical protein, I 98.7 2.1E-05 7.1E-10 68.7 26.5 200 48-256 141-377 (433)
290 3m0c_C LDL receptor, low-densi 98.7 7.1E-05 2.4E-09 70.1 31.1 236 101-350 397-641 (791)
291 3kya_A Putative phosphatase; s 98.7 5.9E-05 2E-09 66.2 27.5 245 89-346 140-480 (496)
292 2xzh_A Clathrin heavy chain 1; 98.7 9.1E-05 3.1E-09 60.4 33.3 271 54-344 34-335 (365)
293 3s94_A LRP-6, low-density lipo 98.6 6E-05 2.1E-09 68.8 27.7 238 101-349 11-251 (619)
294 2xbg_A YCF48-like protein; pho 98.6 8.4E-05 2.9E-09 62.3 24.6 231 47-296 81-319 (327)
295 1n7d_A LDL receptor, low-densi 98.5 6.4E-07 2.2E-11 83.1 12.4 228 108-349 385-622 (699)
296 3s94_A LRP-6, low-density lipo 98.5 0.00027 9.1E-09 64.6 28.1 232 58-303 11-247 (619)
297 1bpo_A Protein (clathrin); cla 98.4 0.00055 1.9E-08 58.2 34.2 271 54-344 33-334 (494)
298 2ism_A Putative oxidoreductase 98.4 0.0003 1E-08 59.6 25.1 229 87-329 30-333 (352)
299 3amr_A 3-phytase; beta-propell 98.4 0.00013 4.6E-09 60.5 21.8 194 141-349 39-272 (355)
300 3amr_A 3-phytase; beta-propell 98.4 0.00015 5E-09 60.3 21.9 196 99-307 40-272 (355)
301 3kya_A Putative phosphatase; s 98.4 0.00051 1.7E-08 60.3 25.6 154 49-203 142-340 (496)
302 2p9w_A MAL S 1 allergenic prot 98.2 0.0011 3.7E-08 54.6 23.1 156 46-204 13-215 (334)
303 3sre_A PON1, serum paraoxonase 98.2 0.0015 5.1E-08 54.9 22.7 184 89-280 51-284 (355)
304 3a9g_A Putative uncharacterize 98.2 0.0025 8.7E-08 53.9 27.0 232 87-329 28-330 (354)
305 2p9w_A MAL S 1 allergenic prot 98.1 0.00057 1.9E-08 56.3 18.7 165 81-253 6-216 (334)
306 2ism_A Putative oxidoreductase 98.1 0.0024 8.3E-08 54.0 23.1 221 130-363 31-325 (352)
307 2g8s_A Glucose/sorbosone dehyd 98.1 0.0036 1.2E-07 53.0 25.9 239 89-339 19-350 (353)
308 3ei3_A DNA damage-binding prot 98.0 0.013 4.5E-07 57.5 35.1 289 58-359 525-892 (1158)
309 2vpj_A Kelch-like protein 12; 98.0 0.0015 5.2E-08 53.8 20.0 232 98-342 14-279 (301)
310 3pbp_A Nucleoporin NUP82; beta 98.0 0.0012 4.1E-08 56.1 18.9 144 56-200 32-208 (452)
311 1xi4_A Clathrin heavy chain; a 97.9 0.0034 1.2E-07 61.5 22.9 276 50-345 29-335 (1630)
312 3sre_A PON1, serum paraoxonase 97.9 0.0066 2.3E-07 51.0 22.0 165 63-235 81-282 (355)
313 3ii7_A Kelch-like protein 7; p 97.9 0.0038 1.3E-07 51.6 20.0 224 64-300 23-273 (306)
314 2vpj_A Kelch-like protein 12; 97.8 0.0051 1.8E-07 50.6 20.2 223 65-300 31-279 (301)
315 2xn4_A Kelch-like protein 2; s 97.7 0.0036 1.2E-07 51.6 18.0 231 99-342 16-277 (302)
316 2xn4_A Kelch-like protein 2; s 97.7 0.0066 2.3E-07 50.0 19.6 223 65-300 30-277 (302)
317 1zgk_A Kelch-like ECH-associat 97.7 0.0052 1.8E-07 50.8 18.6 223 65-300 39-288 (308)
318 3a9g_A Putative uncharacterize 97.7 0.018 6.2E-07 48.6 23.3 227 129-363 28-322 (354)
319 3ii7_A Kelch-like protein 7; p 97.6 0.0062 2.1E-07 50.2 17.7 230 100-342 13-273 (306)
320 3pbp_A Nucleoporin NUP82; beta 97.6 0.023 7.7E-07 48.5 20.2 148 95-248 28-208 (452)
321 3das_A Putative oxidoreductase 97.6 0.027 9.4E-07 47.1 28.8 233 86-329 30-326 (347)
322 1zgk_A Kelch-like ECH-associat 97.5 0.011 3.8E-07 48.8 17.7 232 98-342 24-288 (308)
323 2uvk_A YJHT; unknown function, 97.5 0.02 6.8E-07 48.4 19.6 83 64-151 30-128 (357)
324 2xzh_A Clathrin heavy chain 1; 97.5 0.029 1E-06 46.0 28.2 204 56-270 78-309 (365)
325 4asc_A Kelch repeat and BTB do 97.4 0.026 8.8E-07 46.7 19.1 183 65-257 13-226 (315)
326 1tl2_A L10, protein (tachylect 97.3 0.023 8E-07 43.7 15.0 105 88-199 41-158 (236)
327 1bpo_A Protein (clathrin); cla 97.2 0.084 2.9E-06 45.2 30.4 206 56-272 77-310 (494)
328 2woz_A Kelch repeat and BTB do 97.2 0.069 2.4E-06 44.2 19.8 181 65-256 24-235 (318)
329 2zwa_A Leucine carboxyl methyl 97.2 0.072 2.5E-06 49.5 20.8 188 65-256 412-639 (695)
330 2woz_A Kelch repeat and BTB do 97.1 0.061 2.1E-06 44.5 17.6 228 101-342 18-288 (318)
331 3ei3_A DNA damage-binding prot 97.1 0.27 9.3E-06 48.4 34.0 268 58-341 620-955 (1158)
332 1cru_A Protein (soluble quinop 97.0 0.16 5.3E-06 44.5 29.4 104 88-192 27-162 (454)
333 4asc_A Kelch repeat and BTB do 96.9 0.075 2.6E-06 43.9 16.9 133 66-205 68-222 (315)
334 2be1_A Serine/threonine-protei 96.8 0.032 1.1E-06 46.5 13.3 112 100-215 11-138 (339)
335 3s25_A Hypothetical 7-bladed b 96.7 0.18 6.2E-06 41.3 22.4 212 96-341 22-255 (302)
336 1tl2_A L10, protein (tachylect 96.7 0.13 4.6E-06 39.5 17.7 182 141-343 3-210 (236)
337 1xi4_A Clathrin heavy chain; a 96.6 0.16 5.5E-06 50.3 18.4 194 56-260 77-297 (1630)
338 3das_A Putative oxidoreductase 96.6 0.26 9.1E-06 41.2 26.4 232 124-363 26-318 (347)
339 3ott_A Two-component system se 96.5 0.53 1.8E-05 44.2 33.1 257 57-340 158-447 (758)
340 2zwa_A Leucine carboxyl methyl 96.5 0.51 1.7E-05 43.8 21.4 201 97-301 396-637 (695)
341 3sbq_A Nitrous-oxide reductase 96.4 0.46 1.6E-05 42.1 20.2 234 101-342 72-409 (638)
342 2uvk_A YJHT; unknown function, 96.4 0.36 1.2E-05 40.6 18.2 54 291-346 286-347 (357)
343 1cru_A Protein (soluble quinop 96.4 0.44 1.5E-05 41.6 18.4 108 129-237 26-162 (454)
344 3sbq_A Nitrous-oxide reductase 96.3 0.53 1.8E-05 41.8 21.5 213 64-283 152-455 (638)
345 2be1_A Serine/threonine-protei 96.1 0.018 6.1E-07 48.0 7.7 116 142-263 10-141 (339)
346 3s25_A Hypothetical 7-bladed b 95.9 0.56 1.9E-05 38.4 26.6 237 64-338 36-290 (302)
347 3ott_A Two-component system se 95.8 1.2 4.3E-05 41.7 34.3 265 48-340 65-351 (758)
348 3qhy_B Beta-lactamase inhibito 95.4 0.85 2.9E-05 36.9 20.4 226 88-345 24-250 (282)
349 2g8s_A Glucose/sorbosone dehyd 95.4 1 3.6E-05 37.8 26.3 225 48-280 20-340 (353)
350 3b7f_A Glycosyl hydrolase, BNR 94.6 1.8 6.3E-05 36.8 28.9 294 57-361 24-391 (394)
351 2wg3_C Hedgehog-interacting pr 94.3 2.5 8.7E-05 36.9 26.1 107 88-194 14-159 (463)
352 4gq2_M Nucleoporin NUP120; bet 90.7 5.5 0.00019 38.5 14.1 38 89-126 237-274 (950)
353 3qhy_B Beta-lactamase inhibito 89.8 6.7 0.00023 31.6 22.0 236 49-320 27-263 (282)
354 4fhn_B Nucleoporin NUP120; pro 81.7 5.8 0.0002 39.3 9.1 38 89-126 239-276 (1139)
355 3f7f_A Nucleoporin NUP120; nuc 78.3 13 0.00043 34.4 9.4 37 89-127 223-259 (729)
356 4gq2_M Nucleoporin NUP120; bet 78.2 51 0.0018 31.9 14.7 39 220-261 237-275 (950)
357 4hvt_A Ritya.17583.B, post-pro 76.4 49 0.0017 30.7 20.3 202 137-343 137-383 (711)
358 3b7f_A Glycosyl hydrolase, BNR 76.0 35 0.0012 28.8 25.1 99 100-201 23-144 (394)
359 3q6k_A 43.2 kDa salivary prote 75.9 35 0.0012 28.8 23.8 186 66-279 124-340 (381)
360 1sqj_A OXG-RCBH, oligoxylogluc 75.0 57 0.0019 30.8 23.0 148 87-236 14-187 (789)
361 3uc1_A DNA gyrase subunit A; D 73.8 36 0.0012 28.0 20.5 145 56-204 54-228 (327)
362 4a9v_A PHOX; hydrolase, beta-p 73.6 17 0.00057 32.7 8.6 65 264-328 477-548 (592)
363 3kci_A Probable E3 ubiquitin-p 72.7 42 0.0014 28.3 27.2 269 56-342 11-346 (389)
364 1suu_A DNA gyrase subunit A; t 71.6 40 0.0014 27.5 25.9 231 97-341 6-283 (312)
365 3no0_A DNA gyrase subunit A; D 71.4 37 0.0013 27.1 18.3 197 131-341 25-246 (276)
366 3kci_A Probable E3 ubiquitin-p 71.3 46 0.0016 28.1 26.6 150 51-203 58-240 (389)
367 3uc1_A DNA gyrase subunit A; D 70.3 44 0.0015 27.5 22.2 231 100-342 4-280 (327)
368 3mvd_K Regulator of chromosome 68.2 56 0.0019 27.9 33.8 268 51-341 29-374 (423)
369 3zwu_A Alkaline phosphatase PH 67.1 19 0.00064 32.6 7.7 64 265-328 478-548 (592)
370 2wg3_C Hedgehog-interacting pr 66.4 66 0.0023 28.0 25.1 107 130-237 14-157 (463)
371 4a9v_A PHOX; hydrolase, beta-p 61.8 33 0.0011 30.8 8.1 62 220-281 477-549 (592)
372 1zi0_A DNA gyrase subunit A; b 61.7 63 0.0022 26.2 25.1 234 97-342 1-278 (307)
373 4hvt_A Ritya.17583.B, post-pro 61.3 1E+02 0.0036 28.6 23.9 223 66-298 157-429 (711)
374 1zi0_A DNA gyrase subunit A; b 59.3 70 0.0024 25.9 22.0 145 55-203 53-225 (307)
375 3l6v_A GYRA, DNA gyrase subuni 58.2 83 0.0028 26.4 23.9 151 95-251 3-179 (370)
376 4fhn_B Nucleoporin NUP120; pro 58.2 23 0.0008 35.1 7.3 38 221-261 240-277 (1139)
377 1suu_A DNA gyrase subunit A; t 57.7 76 0.0026 25.8 22.9 145 56-204 59-231 (312)
378 3zwu_A Alkaline phosphatase PH 57.5 41 0.0014 30.4 8.1 58 132-191 478-548 (592)
379 1a12_A RCC1, regulator of chro 52.4 1.1E+02 0.0037 26.0 26.5 230 48-299 61-365 (413)
380 1wp5_A Topoisomerase IV; broke 49.2 1.1E+02 0.0037 25.1 23.2 147 55-204 50-225 (323)
381 1sqj_A OXG-RCBH, oligoxylogluc 44.7 2.1E+02 0.007 27.0 20.5 62 129-192 14-83 (789)
382 4d9s_A UVB-resistance protein 43.7 1.5E+02 0.0051 25.1 33.1 272 48-341 18-357 (406)
383 1wp5_A Topoisomerase IV; broke 41.9 1.4E+02 0.0049 24.4 23.5 233 97-341 3-277 (323)
384 3l6v_A GYRA, DNA gyrase subuni 38.0 1.8E+02 0.0061 24.4 21.0 109 138-251 4-131 (370)
385 3f7f_A Nucleoporin NUP120; nuc 37.5 49 0.0017 30.6 5.4 31 131-164 223-253 (729)
386 3mvd_K Regulator of chromosome 35.7 2E+02 0.0069 24.3 27.1 232 49-300 78-375 (423)
387 3no0_A DNA gyrase subunit A; D 33.1 1.8E+02 0.0062 23.0 22.1 158 87-251 23-195 (276)
388 2cn3_A Xyloglucanase, beta-1,4 33.0 3E+02 0.01 25.6 23.4 105 88-193 23-152 (737)
389 3q6k_A 43.2 kDa salivary prote 32.1 2.3E+02 0.0079 23.9 22.4 183 110-328 124-341 (381)
390 4d9s_A UVB-resistance protein 30.7 2.4E+02 0.0083 23.7 24.5 149 48-203 123-304 (406)
391 1q47_A Semaphorin 3A; beta pro 28.6 2E+02 0.0067 25.3 7.6 28 86-113 460-487 (495)
392 4gz8_A Semaphorin-3A; multi-do 28.1 2.3E+02 0.0077 26.1 8.1 29 85-113 467-495 (667)
393 3of7_A Regulator of chromosome 27.7 3E+02 0.01 23.8 26.5 150 47-203 68-284 (473)
394 3of7_A Regulator of chromosome 27.6 3E+02 0.01 23.8 22.5 148 48-202 150-339 (473)
395 1q47_A Semaphorin 3A; beta pro 26.9 1.8E+02 0.0062 25.6 7.1 69 131-199 405-487 (495)
396 3al9_A Plexin-A2; beta-propell 24.3 1.4E+02 0.0046 26.7 5.9 56 58-113 416-476 (539)
397 1olz_A Semaphorin 4D; developm 22.2 2.6E+02 0.009 25.7 7.5 57 143-199 416-477 (663)
398 3hx6_A Type 4 fimbrial biogene 21.5 4.4E+02 0.015 23.6 18.6 159 185-344 85-287 (570)
399 3nvq_A Semaphorin-7A; beta-pro 20.1 3.7E+02 0.013 24.3 7.8 29 86-114 417-445 (590)
No 1
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.7e-55 Score=385.07 Aligned_cols=326 Identities=44% Similarity=0.840 Sum_probs=291.8
Q ss_pred CCCCCCCCCCcEEeeCCCCCCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEE
Q 040533 23 GSPTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTL 102 (364)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 102 (364)
++..|.+|..|++++++|.+.+|||++.++|+++++||++.|+.|+|||..+++....+.+.+|...|++++|+|+|++|
T Consensus 83 ~~~~r~i~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~l 162 (420)
T 4gga_A 83 RKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL 162 (420)
T ss_dssp ---CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred cCCCcccCCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEE
Confidence 45568899999999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred EEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEc
Q 040533 103 AVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182 (364)
Q Consensus 103 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 182 (364)
|+|+.||.|+|||+++++.+..+.+|...+.++++ ++.+|++|+.|+.+++||..........+.+|...+..+.|+
T Consensus 163 asgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~---~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 163 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee---CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999999999999999999999999888 678999999999999999998877788889999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCC-cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 183 NEGNLLASGGDDNLVHVWDHSKMSSS-KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 183 ~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
|+++++++++.|+.+++||....... ..+.....|...|.+++|+|.+..++++++|+.|++|++||+.++++...+..
T Consensus 240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~ 319 (420)
T 4gga_A 240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 319 (420)
T ss_dssp TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC
T ss_pred CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc
Confidence 99999999999999999998865432 34566778899999999999999999987778999999999999999999999
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
+..+.++.|+|++..++++.+ ..|+.|++||+.+++++.++.+|.+.|++++|+|+|++|++|+.||+|+|||+..
T Consensus 320 ~~~v~~~~~~~~~~~lv~~sg----~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 320 HSQVCSILWSPHYKELISGHG----FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp SSCEEEEEEETTTTEEEEEEC----TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred ccceeeeeecCCCCeEEEEEe----cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 999999999999999998754 3499999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcceeccCCce
Q 040533 342 PSGSGDFVSHLDGL 355 (364)
Q Consensus 342 ~~~~~~~~~~~~~v 355 (364)
.........+...+
T Consensus 396 ~~~~~~~~~~~~~~ 409 (420)
T 4gga_A 396 LDPARRREREKASA 409 (420)
T ss_dssp SSCC----------
T ss_pred CCccchhhhccCCc
Confidence 76665555444433
No 2
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.9e-52 Score=352.37 Aligned_cols=314 Identities=46% Similarity=0.882 Sum_probs=284.5
Q ss_pred CCCCCCCCCCcEEeeCCCCCCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEE
Q 040533 23 GSPTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTL 102 (364)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 102 (364)
++..|.+|..|++++++|.+.+++|+++++||++++||++.|+.|+|||+.+++..+.+.+.+|...|++++|+|++++|
T Consensus 3 ~~~~r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 3 RKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp ---CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred CCCCcccCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEE
Confidence 34568999999999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred EEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEc
Q 040533 103 AVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182 (364)
Q Consensus 103 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 182 (364)
++|+.||.|++||+++++.+..+.+|...+.++.+ ++.++++++.++.+++|+..........+.+|...+..+.++
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 99999999999999999999999999999887766 678999999999999999998877788888999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCC-cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 183 NEGNLLASGGDDNLVHVWDHSKMSSS-KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 183 ~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
++++++++++.|+.|++||+++.+.. ........+.+.|.++.++|++..++..++++.++.|++||............
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~ 239 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 239 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc
Confidence 99999999999999999999875432 23455566788999999999998888766566899999999999999988888
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
...+..+.|+|.+..++++.+ +.|+.|++||+++++++.++.+|.+.|++++|+|+|++|++|+.||+|+|||+.+
T Consensus 240 ~~~v~~~~~~~~~~~~~~~sg----~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 240 HSQVCSILWSPHYKELISGHG----FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp SSCEEEEEEETTTTEEEEEEC----TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred eeeeeeeeecccccceEEEEE----cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 899999999999999987643 4599999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 040533 342 PS 343 (364)
Q Consensus 342 ~~ 343 (364)
..
T Consensus 316 ~d 317 (318)
T 4ggc_A 316 LD 317 (318)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 3
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8e-50 Score=349.69 Aligned_cols=324 Identities=37% Similarity=0.706 Sum_probs=278.4
Q ss_pred CCCCCCCCcEEeeCCCCCCCcceeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEE
Q 040533 25 PTDFDFQKEARILDAPNLRNDYYSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAV 104 (364)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 104 (364)
..+.++..|+++++.+.+..++++.+++|+++.+++++.|+.|++||..+++....... .|...|++++|+|++++|++
T Consensus 73 ~~r~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~ 151 (401)
T 4aez_A 73 AKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAET-DESTYVASVKWSHDGSFLSV 151 (401)
T ss_dssp --CCCCCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC-CTTCCEEEEEECTTSSEEEE
T ss_pred ccCcCCCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeec-CCCCCEEEEEECCCCCEEEE
Confidence 45778899999999999999999999999999999999999999999999987666654 48899999999999999999
Q ss_pred EecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCC
Q 040533 105 GYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE 184 (364)
Q Consensus 105 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 184 (364)
|+.||.|++||+.+++.+..+.+|...|.+++| ++++|++++.||.|++||++........+..|...|.+++|+|+
T Consensus 152 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 228 (401)
T 4aez_A 152 GLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD 228 (401)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred ECCCCeEEEEECcCCeEEEEecCCCCceEEEEE---CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC
Confidence 999999999999999999999999999999999 56799999999999999999766667888899999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCC
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ 264 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~ 264 (364)
+++|++++.|+.|++||++.. ..+..+..|...|.+++|+|++..++++++|+.|+.|++||+.+++.+..+.++..
T Consensus 229 ~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~ 305 (401)
T 4aez_A 229 GLQLASGGNDNVVQIWDARSS---IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ 305 (401)
T ss_dssp SSEEEEEETTSCEEEEETTCS---SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSC
T ss_pred CCEEEEEeCCCeEEEccCCCC---CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 999999999999999998864 45777888999999999999998999997666899999999999999999999999
Q ss_pred eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee--eccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 265 ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG--ELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
+.+++|+|++++++++.+ ..++.|++||+.+++... .+.+|...|.+++|+|+|++|++++.||.|++|++.++
T Consensus 306 v~~~~~s~~~~~l~~~~g----~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 306 VTSLIWSPHSKEIMSTHG----FPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EEEEEECSSSSEEEEEEC----TTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred EEEEEECCCCCeEEEEee----cCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 999999999999998532 349999999999865544 46789999999999999999999999999999999998
Q ss_pred CCCccee-ccCCceeeee
Q 040533 343 SGSGDFV-SHLDGLLSLK 359 (364)
Q Consensus 343 ~~~~~~~-~~~~~v~~~~ 359 (364)
+.+.... .+..+..++.
T Consensus 382 ~~~~~~~~~~~~~~~~i~ 399 (401)
T 4aez_A 382 DHVKRPIPITKTPSSSIT 399 (401)
T ss_dssp ------------------
T ss_pred ccccccccccCCCcccee
Confidence 8766543 2333444443
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.1e-49 Score=346.48 Aligned_cols=279 Identities=25% Similarity=0.444 Sum_probs=252.3
Q ss_pred eeecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|+ .+++++.|+.|++||+.+++... .+.+|.+.|.+++|+|++++|++|+.||+|++||+.+++.+..
T Consensus 110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~--~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~ 187 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT 187 (410)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE--EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE--EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Confidence 4788889885 37778889999999999988654 4559999999999999999999999999999999999999999
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+.+|...|.+++|+| ++++|++|+.|++|++||++++.. ...+.+|...|.++.|+|++.+|++|+.|+.|++||++.
T Consensus 188 ~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~ 265 (410)
T 1vyh_C 188 MHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265 (410)
T ss_dssp CCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcE-EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 999999999999999 999999999999999999998764 677889999999999999999999999999999999876
Q ss_pred CCCCcceEEecccccceeEEEEccCC-------------------CcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CC
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQ-------------------FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQ 264 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~ 264 (364)
. .....+.+|...|.+++|+|++ ..++++++ .|+.|++||+++++++..+..+ ..
T Consensus 266 ~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs--~D~~i~iwd~~~~~~~~~~~~h~~~ 340 (410)
T 1vyh_C 266 K---ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGHDNW 340 (410)
T ss_dssp C---CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSC
T ss_pred C---ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe--CCCeEEEEECCCCceEEEEECCCCc
Confidence 4 4577888999999999999973 24677776 8999999999999999888754 67
Q ss_pred eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 265 ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
|.+++|+|++++++++.. |+.|++||+.+++++..+.+|...|++++|+|++.+|++|+.||+|++|+++
T Consensus 341 v~~v~~~~~g~~l~s~s~------D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 341 VRGVLFHSGGKFILSCAD------DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEEECSSSSCEEEEET------TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEEEcCCCCEEEEEeC------CCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999998854 9999999999999999999999999999999999999999999999999863
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.4e-49 Score=333.52 Aligned_cols=280 Identities=18% Similarity=0.343 Sum_probs=253.4
Q ss_pred eeecccCCCc------cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc
Q 040533 47 YSNMMDWGRN------NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 47 ~~~~~~~~~~------~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 120 (364)
.+.+++|+++ .+++++.|+.|++|+..+++......+.+|...|.+++|+|++.++++|+.|+.|++||+.+++
T Consensus 34 ~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~ 113 (321)
T 3ow8_A 34 AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK 113 (321)
T ss_dssp CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred cEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 4788888763 3778889999999999888766666778999999999999999999999999999999999999
Q ss_pred eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
.+..+..|...+.+++|+| ++++|++++.||.|++||++++.. ...+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 114 ~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iw 191 (321)
T 3ow8_A 114 QIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 191 (321)
T ss_dssp EEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 9999999999999999999 999999999999999999997765 55677888999999999999999999999999999
Q ss_pred eCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceee
Q 040533 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILS 279 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~ 279 (364)
|+++. +.+..+.+|..+|.+++|+|++ .++++++ .|+.|++||+++++....+..+ ..|.+++|+|+++++++
T Consensus 192 d~~~~---~~~~~~~~h~~~v~~l~~spd~-~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s 265 (321)
T 3ow8_A 192 DIATG---KLLHTLEGHAMPIRSLTFSPDS-QLLVTAS--DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVS 265 (321)
T ss_dssp ETTTT---EEEEEECCCSSCCCEEEECTTS-CEEEEEC--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECCCC---cEEEEEcccCCceeEEEEcCCC-CEEEEEc--CCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEE
Confidence 98764 4578888999999999999998 4666765 8999999999999998888754 67999999999999998
Q ss_pred eccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
+.. |+.|++||+.+++++..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 266 ~s~------D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 266 SSS------DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EET------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EeC------CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 854 9999999999999999999999999999999999999999999999999963
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.5e-48 Score=328.73 Aligned_cols=271 Identities=17% Similarity=0.276 Sum_probs=245.2
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
..+.+|.+.|++++|+|++++|++|+.||.|++||+++++.+..+..|..+|.+++|+| ++++|++|+.|+.|++||+.
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETT
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEECC
Confidence 44568999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred cCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 161 VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
+++. ...+.+|...|.+++|+|++++|++|+.|++|++||++... .....+.+|...|.+++|+|.+..++++++
T Consensus 86 ~~~~-~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~--~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs-- 160 (304)
T 2ynn_A 86 TGEK-VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW--ALEQTFEGHEHFVMCVAFNPKDPSTFASGC-- 160 (304)
T ss_dssp TCCE-EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT--EEEEEECCCCSCEEEEEECTTCTTEEEEEE--
T ss_pred CCcE-EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc--chhhhhcccCCcEEEEEECCCCCCEEEEEe--
Confidence 8775 66788999999999999999999999999999999987542 345677889999999999997667888877
Q ss_pred CCCeEEEEECCCCeEEEEEec--CCCeEEEEEcC--CccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEE
Q 040533 241 QDGCIKIWNVQKGTCIHSVDT--KAQICGLEWNR--HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILEL 316 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~--~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i 316 (364)
.|++|++||++++.....+.. ...+..+.|+| ++.+++++.. |+.|++||+++++++..+.+|...|.++
T Consensus 161 ~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~------D~~i~iWd~~~~~~~~~~~~h~~~v~~~ 234 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD------DLTIKIWDYQTKSCVATLEGHMSNVSFA 234 (304)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET------TSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC------CCeEEEEeCCCCccceeeCCCCCCEEEE
Confidence 899999999988776655543 36688899887 6778888754 9999999999999999999999999999
Q ss_pred eecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 317 SQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 317 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+|+|++++|++|+.||+|++||+.+++....+..|.+.+++++|+|.
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTT
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCC
Confidence 99999999999999999999999999999999999999999999884
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.8e-47 Score=327.15 Aligned_cols=274 Identities=18% Similarity=0.407 Sum_probs=244.1
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc----ce
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS----KL 121 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----~~ 121 (364)
+.+++|++++ +++++.|+.|++||..+++... .+..|...|.+++|+|++++|++|+.|+.|++|++.++ ..
T Consensus 58 v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~ 135 (340)
T 1got_B 58 IYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH--AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV 135 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE--EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce--EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCccee
Confidence 7788888863 7778889999999999887644 44588999999999999999999999999999999875 34
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
...+.+|...|.++.|++ ++ .+++++.|+.|++||++++.. ...+.+|...|.+++|+|+++++++|+.|+.|++||
T Consensus 136 ~~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd 212 (340)
T 1got_B 136 SRELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212 (340)
T ss_dssp EEEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEecCCCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcE-EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 567788999999999997 55 488999999999999987764 667889999999999999999999999999999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCcccee
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKEIL 278 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~ 278 (364)
++.. ..+..+.+|...|.+++|+|++ .++++++ .|+.|++||+++++.+..+.+. ..+.+++|+|++++++
T Consensus 213 ~~~~---~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 213 VREG---MCRQTFTGHESDINAICFFPNG-NAFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp TTTC---SEEEEECCCSSCEEEEEECTTS-SEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred CCCC---eeEEEEcCCcCCEEEEEEcCCC-CEEEEEc--CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEE
Confidence 8764 4578888999999999999998 5666665 8999999999999988887654 3699999999999999
Q ss_pred eeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 279 SGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
++.. |+.|++||+.+++.+..+.+|.+.|.+++|+|+|.+|++|+.||.|++||
T Consensus 287 ~g~~------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 287 AGYD------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECC------CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9855 99999999999999999999999999999999999999999999999996
No 8
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-47 Score=335.99 Aligned_cols=269 Identities=20% Similarity=0.348 Sum_probs=246.9
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
..+.+|...|++++|+|++++|++|+.||+|+|||+.+++....+.+|...|.+++|+| ++++|++|+.|++|++||+.
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETT
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Confidence 45669999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred cCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 161 VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
+.+ ....+.+|...|.+++|+|++++|++|+.|+.|++||++++ .++..+.+|...|.++.|+|++ .++++++
T Consensus 181 ~~~-~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~g-~~l~s~s-- 253 (410)
T 1vyh_C 181 GFE-CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG---YCVKTFTGHREWVRMVRPNQDG-TLIASCS-- 253 (410)
T ss_dssp SSC-EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTS-SEEEEEE--
T ss_pred CCc-eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEeCCCccEEEEEECCCC-CEEEEEc--
Confidence 766 46778899999999999999999999999999999998764 4578888999999999999998 5666665
Q ss_pred CCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCC--------------------ccceeeeccCCccCCCCeEEEeeCCC
Q 040533 241 QDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRH--------------------HKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~--------------------~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
.|+.|++||+.++++...+.. ...+.+++|+|+ +.+++++. .|+.|++||+.+
T Consensus 254 ~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs------~D~~i~iwd~~~ 327 (410)
T 1vyh_C 254 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS------RDKTIKMWDVST 327 (410)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE------TTSEEEEEETTT
T ss_pred CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe------CCCeEEEEECCC
Confidence 899999999999998888854 467999999997 45677664 499999999999
Q ss_pred CceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 300 MTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 300 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++++..+.+|...|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|.
T Consensus 328 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~ 391 (410)
T 1vyh_C 328 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 391 (410)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSS
T ss_pred CceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999996
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-46 Score=319.03 Aligned_cols=279 Identities=18% Similarity=0.343 Sum_probs=244.0
Q ss_pred eecccCCCc---cEEEEEeCCeEEEEECCCCce---eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 48 SNMMDWGRN---NILAIALGLELYLWKQENGEV---QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 48 ~~~~~~~~~---~~~~~~~~~~i~iw~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+.+++|+++ .+++++.|+.|++|++.+... .....+.+|...|.+++|+|++++|++|+.|++|++||+.+++.
T Consensus 20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~ 99 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET 99 (319)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCe
Confidence 777888873 377888999999999865432 23456779999999999999999999999999999999999999
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCC------CCEEEEEeCCC
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE------GNLLASGGDDN 195 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~ 195 (364)
+..+.+|...|.+++|+| ++.+|++|+.|++|++||++.. ....+.+|...|.++.|+|. +..+++++.|+
T Consensus 100 ~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~ 176 (319)
T 3frx_A 100 YQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176 (319)
T ss_dssp EEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECCC------CCEEEEEETTS
T ss_pred eEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC--eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCC
Confidence 999999999999999999 9999999999999999999633 36677899999999999985 44899999999
Q ss_pred eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCcc
Q 040533 196 LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHK 275 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~ 275 (364)
.|++||++.. +....+.+|...|.+++|+|++ .++++++ .|+.|++||+.+++.+..+..+..+.+++|+|++.
T Consensus 177 ~i~~wd~~~~---~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~ 250 (319)
T 3frx_A 177 MVKAWNLNQF---QIEADFIGHNSNINTLTASPDG-TLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250 (319)
T ss_dssp CEEEEETTTT---EEEEEECCCCSCEEEEEECTTS-SEEEEEE--TTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSS
T ss_pred EEEEEECCcc---hhheeecCCCCcEEEEEEcCCC-CEEEEEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCC
Confidence 9999998764 4577788999999999999998 4666665 89999999999999999999889999999999999
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeeecc--------ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ--------HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--------~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
+++++. ++.+++|++.....+..+. .|...+.+++|+|+|++|++|+.||.|++||+.+.
T Consensus 251 ~la~~~-------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 251 WLAAAT-------ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEE-------TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEEEc-------CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 998875 6679999998876665543 34567899999999999999999999999999864
No 10
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.9e-46 Score=318.18 Aligned_cols=275 Identities=19% Similarity=0.359 Sum_probs=243.8
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc------
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS------ 119 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~------ 119 (364)
+.+++|+|+ .+++++.|+.|++||..+++..... ..|...|.+++|+|++.+|++|+.|+.+++|++...
T Consensus 67 V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~--~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~ 144 (354)
T 2pbi_B 67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV--TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA 144 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE--ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc
Confidence 788888885 3778889999999999888765444 477889999999999999999999999999998643
Q ss_pred ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC--CCCEEEEEeCCCeE
Q 040533 120 KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN--EGNLLASGGDDNLV 197 (364)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i 197 (364)
.....+..|...|.+++|+| ++..|++++.|++|++||+++++. ...+.+|...|.+++|+| ++++|++|+.||.|
T Consensus 145 ~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v 222 (354)
T 2pbi_B 145 AKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQL-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA 222 (354)
T ss_dssp GGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCE
T ss_pred ccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeE-EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeE
Confidence 34556778999999999999 899999999999999999987764 677889999999999988 56899999999999
Q ss_pred EEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCc
Q 040533 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHH 274 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~ 274 (364)
++||+++. +.+..+.+|...|.+++|+|++ .++++++ .|++|++||+++++.+..+..+ ..+.+++|+|++
T Consensus 223 ~~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s--~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g 296 (354)
T 2pbi_B 223 MVWDMRSG---QCVQAFETHESDVNSVRYYPSG-DAFASGS--DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG 296 (354)
T ss_dssp EEEETTTC---CEEEEECCCSSCEEEEEECTTS-SEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred EEEECCCC---cEEEEecCCCCCeEEEEEeCCC-CEEEEEe--CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC
Confidence 99998874 4578888999999999999998 5667766 8999999999999888777544 368899999999
Q ss_pred cceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 275 KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 275 ~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
.+++++.. |+.|++||+.+++.+..+.+|.+.|++++|+|+|++|++|+.||+|++|+
T Consensus 297 ~~l~~g~~------d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 297 RLLFAGYN------DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SEEEEEET------TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CEEEEEEC------CCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999865 99999999999999999999999999999999999999999999999995
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-46 Score=345.40 Aligned_cols=304 Identities=16% Similarity=0.235 Sum_probs=251.6
Q ss_pred eeecccCCCcc---EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 47 YSNMMDWGRNN---ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 47 ~~~~~~~~~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
.+.+++|+|++ +++++.|+.|++||..+++.. ..+.+|...|.+++|+|++++||+|+.|++|++||+.+++...
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~--~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK--STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 226 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE--EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe--eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEee
Confidence 47888999863 777888999999999887654 4456999999999999999999999999999999999998888
Q ss_pred eee-------cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce-------------------------------
Q 040533 124 NLE-------GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV------------------------------- 165 (364)
Q Consensus 124 ~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------------------------------- 165 (364)
.+. +|...|.+++|+| ++++|++++.|++|++||+.+++..
T Consensus 227 ~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~ 305 (611)
T 1nr0_A 227 VFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 305 (611)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCC
T ss_pred eeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCc
Confidence 774 7999999999999 9999999999999999999865421
Q ss_pred -----------eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcce-----------------------
Q 040533 166 -----------TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCL----------------------- 211 (364)
Q Consensus 166 -----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----------------------- 211 (364)
...+.+|...|.+++|+|++++|++++.|+.|++||+.+.......
T Consensus 306 i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s 385 (611)
T 1nr0_A 306 INFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 385 (611)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred EEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEE
Confidence 1234579999999999999999999999999999998753210000
Q ss_pred ---------------------------------------------------------EEecccccceeEEEEccCCCcEE
Q 040533 212 ---------------------------------------------------------HRFRDHRAAVKALAWCPYQFNVL 234 (364)
Q Consensus 212 ---------------------------------------------------------~~~~~~~~~v~~~~~~~~~~~~~ 234 (364)
..+ .|...+.+++|+|++ .++
T Consensus 386 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg-~~l 463 (611)
T 1nr0_A 386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDK-QFV 463 (611)
T ss_dssp TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTS-CEE
T ss_pred cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCC-CEE
Confidence 000 123457789999998 566
Q ss_pred EeecCCCCCeEEEEECCCCeE--EEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC-Cceeee--cccc
Q 040533 235 ASGGGTQDGCIKIWNVQKGTC--IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH-MTKWGE--LQHQ 309 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~-~~~~~~--~~~~ 309 (364)
++++ .|++|++||+.++.. .....+...|.+++|+|+|++|+++.. |+.|++|++.+ ++.... +..|
T Consensus 464 asgs--~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~------d~~v~~w~~~~~~~~~~~~~~~~H 535 (611)
T 1nr0_A 464 AVGG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ------SRKVIPYSVANNFELAHTNSWTFH 535 (611)
T ss_dssp EEEE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET------TSCEEEEEGGGTTEESCCCCCCCC
T ss_pred EEeC--CCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcC------CCCEEEEEcCCCCceeeeeeeeec
Confidence 7766 899999999987654 344556788999999999999999855 99999999987 555443 3459
Q ss_pred ccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC-C-cceecc-CCceeeeeeccC
Q 040533 310 TSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG-S-GDFVSH-LDGLLSLKVSPI 363 (364)
Q Consensus 310 ~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~-~-~~~~~~-~~~v~~~~~sp~ 363 (364)
...|.+++|+|+|++|++|+.|++|++|++.++.. . ..+.+| .+.|++++|+|.
T Consensus 536 ~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d 592 (611)
T 1nr0_A 536 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE 592 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEET
T ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCC
Confidence 99999999999999999999999999999988653 3 456688 899999999985
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.8e-47 Score=322.95 Aligned_cols=283 Identities=18% Similarity=0.207 Sum_probs=228.3
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCc---------eeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGE---------VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA 116 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 116 (364)
.+.+++|+|++ +++++.|+.+++||..... .........+...|.+++|+|++ .|++|+.||+|+|||+
T Consensus 32 ~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~ 110 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWEL 110 (344)
T ss_dssp EEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEec
Confidence 47889999974 7777778887777632110 00111112456789999999985 6889999999999999
Q ss_pred CCcceeee----eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC-CEEEEE
Q 040533 117 ETSKLIRN----LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG-NLLASG 191 (364)
Q Consensus 117 ~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 191 (364)
++++.+.. ..+|...|++++|+| ++++|++|+.|++|++||+++++ .+..+.+|...|.+++|+|++ .+|+++
T Consensus 111 ~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~-~~~~~~~h~~~V~~~~~~~~~~~~l~s~ 188 (344)
T 4gqb_B 111 DENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQV-VLSSYRAHAAQVTCVAASPHKDSVFLSC 188 (344)
T ss_dssp CTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred cCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCc-EEEEEcCcCCceEEEEecCCCCCceeee
Confidence 98876543 347999999999999 99999999999999999999776 477888999999999999987 478999
Q ss_pred eCCCeEEEEeCCCCCCCcceEEe--cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEE
Q 040533 192 GDDNLVHVWDHSKMSSSKCLHRF--RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGL 268 (364)
Q Consensus 192 ~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~ 268 (364)
+.|+.|++||++..+. ...+ ..+...+.+++|+|++..++++++ .|+.|++||+++++++..+..+ ..|.++
T Consensus 189 s~D~~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~--~dg~v~~wd~~~~~~~~~~~~h~~~v~~v 263 (344)
T 4gqb_B 189 SEDNRILLWDTRCPKP---ASQIGCSAPGYLPTSLAWHPQQSEVFVFGD--ENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263 (344)
T ss_dssp ETTSCEEEEETTSSSC---EEECC----CCCEEEEEECSSCTTEEEEEE--TTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred ccccccccccccccce---eeeeecceeeccceeeeecCCCCcceEEec--cCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 9999999999887543 4444 345567899999998888999887 8999999999999999888754 779999
Q ss_pred EEcCCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC-EEEEEeCCCcEEEEEeeCCCC
Q 040533 269 EWNRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL-TVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 269 ~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~~~~~~ 344 (364)
+|+|++. +|+++. .|+.|++||+.+++.+ .+.+|.+.|++++|+|+++ +|++|+.||+|++|++.+...
T Consensus 264 ~fsp~g~~~lasgs------~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 264 VFSPHSVPFLASLS------EDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EECSSSSCCEEEEE------TTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEccCCCeEEEEEe------CCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 9999985 677664 4999999999988754 5688999999999999986 567999999999999987543
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-46 Score=320.28 Aligned_cols=291 Identities=20% Similarity=0.376 Sum_probs=237.1
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeee-eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc--ce
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLL-KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS--KL 121 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--~~ 121 (364)
.+..++|+|++ +++++.|+.|++||..++...... ...+|...|.+++|+|++++|++|+.|+.|++|++.++ +.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC 97 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence 36778898864 677788999999999887643322 23589999999999999999999999999999998876 45
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc--eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN--VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 199 (364)
+..+.+|...|.+++|+| ++++|++|+.|+.|++||++.... ....+..|...|.+++|+|++++|++++.|+.|++
T Consensus 98 ~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~ 176 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL 176 (345)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEE
T ss_pred EEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEE
Confidence 678889999999999999 999999999999999999986643 34567789999999999999999999999999999
Q ss_pred EeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC---------------eEEEEEe--cC
Q 040533 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG---------------TCIHSVD--TK 262 (364)
Q Consensus 200 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~---------------~~~~~~~--~~ 262 (364)
||.+... ......+.+|...|.+++|+|++ .++++++ .|++|++||.... +++..+. +.
T Consensus 177 w~~~~~~-~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s--~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 252 (345)
T 3fm0_A 177 YREEEDD-WVCCATLEGHESTVWSLAFDPSG-QRLASCS--DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS 252 (345)
T ss_dssp EEEETTE-EEEEEEECCCSSCEEEEEECTTS-SEEEEEE--TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCS
T ss_pred EEecCCC-EEEEEEecCCCCceEEEEECCCC-CEEEEEe--CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCC
Confidence 9976542 13456788999999999999998 4666665 8999999996321 2333443 34
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce---------eeeccccccceeEEeecCCC-CEEEEEeCCC
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK---------WGELQHQTSRILELSQSPDG-LTVVSAAADE 332 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~---------~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg 332 (364)
..|.+++|+|++..++++.. |+.|++|+...... .....+|...|++++|+|++ .+||+|+.||
T Consensus 253 ~~v~~v~~~~~~~~l~s~~~------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg 326 (345)
T 3fm0_A 253 RTIYDIAWCQLTGALATACG------DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326 (345)
T ss_dssp SCEEEEEECTTTCCEEEEET------TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CcEEEEEEecCCCEEEEEeC------CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC
Confidence 67999999999999998865 99999999865431 12345799999999999998 4999999999
Q ss_pred cEEEEEeeCCCCCcce
Q 040533 333 TLRFWEAFGPSGSGDF 348 (364)
Q Consensus 333 ~i~vw~~~~~~~~~~~ 348 (364)
+|++|++.+++....+
T Consensus 327 ~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 327 EVAFWKYQRPEGLHHH 342 (345)
T ss_dssp CEEEEEECC-------
T ss_pred cEEEEEecCCCCcccc
Confidence 9999999988766543
No 14
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3e-46 Score=324.45 Aligned_cols=283 Identities=18% Similarity=0.360 Sum_probs=244.8
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc-----
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK----- 120 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~----- 120 (364)
+.+++|+|+ .+++++.|+.|++||..+++... .+..|...|.+++|+|++++|++|+.|+.+++|++.+..
T Consensus 69 V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~--~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~ 146 (380)
T 3iz6_a 69 VYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH--AIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGN 146 (380)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE--EEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce--EEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCC
Confidence 788888885 47888899999999999887644 445899999999999999999999999999999986532
Q ss_pred --eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee-----ecccCcEEEEEEcC-CCCEEEEEe
Q 040533 121 --LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI-----NAHTAEVCGLKWSN-EGNLLASGG 192 (364)
Q Consensus 121 --~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~ 192 (364)
....+.+|.+.|.++.|+|.++..|++|+.|++|++||+++++. ...+ .+|...|.+++|++ ++++|++|+
T Consensus 147 ~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs 225 (380)
T 3iz6_a 147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225 (380)
T ss_dssp STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEE
T ss_pred ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeEEEEeecCCCCEEEEEE
Confidence 34567889999999999995577899999999999999998775 3333 57899999999987 889999999
Q ss_pred CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--------CC
Q 040533 193 DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--------AQ 264 (364)
Q Consensus 193 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--------~~ 264 (364)
.|+.|++||++.. ...+..+.+|...|.+++|+|++ ..+++++ .|++|++||+++++.+..+..+ ..
T Consensus 226 ~D~~v~~wd~~~~--~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
T 3iz6_a 226 CDTTVRLWDLRIT--SRAVRTYHGHEGDINSVKFFPDG-QRFGTGS--DDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300 (380)
T ss_dssp TTSCEEEEETTTT--CCCCEEECCCSSCCCEEEECTTS-SEEEEEC--SSSCEEEEETTTTEEEEEECCCCSSSCCSSCS
T ss_pred CCCeEEEEECCCC--CcceEEECCcCCCeEEEEEecCC-CeEEEEc--CCCeEEEEECCCCcEEEEecccccccccccCc
Confidence 9999999998743 24577888999999999999998 5667765 8999999999999998887543 23
Q ss_pred eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec----cccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 265 ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL----QHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
+.+++|+|+|+++++|.. |+.|++||..+++.+..+ .+|.+.|++++|+|+|++|++|+.||+|++|++.
T Consensus 301 v~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 301 VTSVAFSISGRLLFAGYS------NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CSEEEECSSSSEEEEECT------TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred eEEEEECCCCCEEEEEEC------CCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 889999999999999854 999999999998888776 6799999999999999999999999999999988
Q ss_pred CCCC
Q 040533 341 GPSG 344 (364)
Q Consensus 341 ~~~~ 344 (364)
..+.
T Consensus 375 ~~~~ 378 (380)
T 3iz6_a 375 GHRK 378 (380)
T ss_dssp SSSS
T ss_pred CCcc
Confidence 6543
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-46 Score=316.08 Aligned_cols=268 Identities=21% Similarity=0.360 Sum_probs=239.7
Q ss_pred eecCCCCCceEEEEcCC----CCEEEEEecCCcEEEEecCCcce--eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEE
Q 040533 82 KVTGEDDFPTSISWSQD----AKTLAVGYMASKLQLWDAETSKL--IRNLEGHDKRVATASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
...+|.+.|.+++|+|+ +.+|++|+.|++|+||++.+++. ...+.+|...|.+++|+| ++.++++++.|++|+
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIR 105 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC-CCCEEEEEeCCCcEE
Confidence 34589999999999985 57999999999999999987653 446789999999999999 999999999999999
Q ss_pred EEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 156 NHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
+||+.+++. ...+..|...+.+++|+|++++|++++.|+.|++||++... ....+..+...|.+++|+|+++ +++
T Consensus 106 lWd~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~---~~~~~~~~~~~v~~~~~spdg~-~la 180 (321)
T 3ow8_A 106 LWDLENGKQ-IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK---KEYSLDTRGKFILSIAYSPDGK-YLA 180 (321)
T ss_dssp EEETTTTEE-EEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS---EEEEEECSSSCEEEEEECTTSS-EEE
T ss_pred EEECCCCCE-EEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc---eeEEecCCCceEEEEEECCCCC-EEE
Confidence 999987764 66677888899999999999999999999999999987653 4667778888999999999995 566
Q ss_pred eecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccccee
Q 040533 236 SGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL 314 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 314 (364)
+++ .|+.|++||+++++.+..+..+ .+|.+++|+|++++|+++.. |+.|++||+++++.+..+.+|...|.
T Consensus 181 sg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~h~~~v~ 252 (321)
T 3ow8_A 181 SGA--IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD------DGYIKIYDVQHANLAGTLSGHASWVL 252 (321)
T ss_dssp EEE--TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT------TSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred EEc--CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC------CCeEEEEECCCcceeEEEcCCCCceE
Confidence 665 8999999999999999988754 67999999999999998854 99999999999999999999999999
Q ss_pred EEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 315 ELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+++|+|++++|++++.||+|++||+.+++.+..+.+|.+.|.+++|+|.
T Consensus 253 ~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~ 301 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGN 301 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 9999999999999999999999999999999999999999999999985
No 16
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.5e-45 Score=308.99 Aligned_cols=280 Identities=15% Similarity=0.234 Sum_probs=242.8
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+.+++|+|++ +++++.|+.|++||+.+++... .+..|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+
T Consensus 16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 93 (304)
T 2ynn_A 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR--SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE--EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 7888999864 7778889999999999887644 45588999999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 204 (364)
.+|...|.+++|+| ++.+|++|+.|++|++||++++......+.+|...|.+++|+| ++.+|++|+.|+.|++||++.
T Consensus 94 ~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~ 172 (304)
T 2ynn_A 94 EAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172 (304)
T ss_dssp ECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC
T ss_pred eCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence 99999999999999 9999999999999999999987666778889999999999999 678999999999999999876
Q ss_pred CCCCcceEEecccccceeEEEEccCC-CcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeecc
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQ-FNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~ 282 (364)
... .......|...+..+.|+|.. ..++++++ .|++|++||+++++++..+..+ ..|.+++|+|++++++++..
T Consensus 173 ~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s--~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~ 248 (304)
T 2ynn_A 173 STP--NFTLTTGQERGVNYVDYYPLPDKPYMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248 (304)
T ss_dssp SSC--SEEEECCCTTCEEEEEECCSTTCCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred CCc--cceeccCCcCcEEEEEEEEcCCCCEEEEEc--CCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcC
Confidence 543 122234566789999998742 25777776 8999999999999999998755 77999999999999998854
Q ss_pred CCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC--EEEEEeCCCcEEEEEeeC
Q 040533 283 FSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL--TVVSAAADETLRFWEAFG 341 (364)
Q Consensus 283 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~i~vw~~~~ 341 (364)
|+.|++||..+++.+..+..|...+.+++|+|++. ++++|+.| .+.+|++..
T Consensus 249 ------Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 249 ------DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp ------TSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred ------CCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 99999999999999999999999999999999875 57777655 567787654
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1e-45 Score=340.29 Aligned_cols=299 Identities=18% Similarity=0.276 Sum_probs=253.8
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc--eee
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK--LIR 123 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~ 123 (364)
...+++|+|++ .++.+.++.|++|++.+++... .+.+|...|++++|+|+|++||+|+.||+|+|||+.+++ ...
T Consensus 20 ~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~--~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~ 97 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTE--IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT 97 (611)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred ceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCe--EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeE
Confidence 36678899864 7777778899999998776543 455999999999999999999999999999999997543 445
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCC----CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-EEEEEeCCCeEE
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQD----KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-LLASGGDDNLVH 198 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~ 198 (364)
.+.+|.+.|.+++|+| +++.|++++.+ +.|++||. +. ....+.+|...|.+++|+|++. .|++++.|++|+
T Consensus 98 ~~~~~~~~v~~v~fs~-dg~~l~~~~~~~~~~~~v~~wd~--~~-~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~ 173 (611)
T 1nr0_A 98 TIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDT--GT-SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 173 (611)
T ss_dssp EEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTT--CC-BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred eecccCCceEEEEECC-CCCEEEEEECCCCceeEEEEeeC--CC-CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEE
Confidence 7788999999999999 99999988865 46888874 33 2556789999999999999986 699999999999
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe--------cCCCeEEEEE
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD--------TKAQICGLEW 270 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------~~~~v~~~~~ 270 (364)
+||... .+....+.+|...|.+++|+|++ .++++++ .|++|++||+.+++.+..+. +...|.+++|
T Consensus 174 lwd~~~---~~~~~~l~~H~~~V~~v~fspdg-~~las~s--~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~ 247 (611)
T 1nr0_A 174 IFEGPP---FKFKSTFGEHTKFVHSVRYNPDG-SLFASTG--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 247 (611)
T ss_dssp EEETTT---BEEEEEECCCSSCEEEEEECTTS-SEEEEEE--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred EEECCC---CeEeeeeccccCceEEEEECCCC-CEEEEEE--CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEE
Confidence 999765 35577889999999999999998 5677766 89999999999999888873 5578999999
Q ss_pred cCCccceeeeccCCccCCCCeEEEeeCCCCceee-------------------------------------------ecc
Q 040533 271 NRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG-------------------------------------------ELQ 307 (364)
Q Consensus 271 ~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~-------------------------------------------~~~ 307 (364)
+|++++|+++.. |+.|++||+.+++.+. .+.
T Consensus 248 spdg~~l~s~s~------D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~ 321 (611)
T 1nr0_A 248 SPDGTKIASASA------DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY 321 (611)
T ss_dssp CTTSSEEEEEET------TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred CCCCCEEEEEeC------CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc
Confidence 999999998854 9999999998766543 334
Q ss_pred ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcce-eccCCceeeeeeccC
Q 040533 308 HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF-VSHLDGLLSLKVSPI 363 (364)
Q Consensus 308 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~sp~ 363 (364)
+|...|++++|+|+|++|++++.||+|++||+.+++....+ .+|...|.+++|+|.
T Consensus 322 gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~ 378 (611)
T 1nr0_A 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 378 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT
T ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC
Confidence 78889999999999999999999999999999988765554 478999999999864
No 18
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.7e-45 Score=314.99 Aligned_cols=270 Identities=18% Similarity=0.325 Sum_probs=242.3
Q ss_pred eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
...+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+..|...|.+++|+| ++++|++|+.|+.|++|++
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEEET
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEEC
Confidence 345669999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccCc---ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 160 RVSN---NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 160 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
.+.. .....+.+|...|.++.|++++ .+++++.|+.|++||+++. +.+..+.+|...|.+++|+|++ .++++
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~-~~l~s 201 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETG---QQTTTFTGHTGDVMSLSLAPDT-RLFVS 201 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTS-SEEEE
T ss_pred ccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCC---cEEEEEcCCCCceEEEEECCCC-CEEEE
Confidence 8654 2355677899999999999887 5889999999999998764 4578888999999999999988 56677
Q ss_pred ecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc--cccce
Q 040533 237 GGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH--QTSRI 313 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i 313 (364)
++ .|+.|++||++++++...+.. ...|.+++|+|++.+++++.. |+.|++||+++++.+..+.. +...|
T Consensus 202 g~--~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~------d~~v~iwd~~~~~~~~~~~~~~~~~~v 273 (340)
T 1got_B 202 GA--CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD------DATCRLFDLRADQELMTYSHDNIICGI 273 (340)
T ss_dssp EE--TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred Ee--CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC------CCcEEEEECCCCcEEEEEccCCcccce
Confidence 66 899999999999999988875 467999999999999998854 99999999999888776653 33579
Q ss_pred eEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 314 LELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++++|+|+|++|++|+.||.|++||+.+++....+.+|.++|.+++|+|.
T Consensus 274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~d 323 (340)
T 1got_B 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323 (340)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCC
Confidence 99999999999999999999999999999888899999999999999985
No 19
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.5e-46 Score=320.27 Aligned_cols=288 Identities=17% Similarity=0.261 Sum_probs=227.0
Q ss_pred ceeecccCCCcc-EEE-EEe------CCeEEEEECCCCceeee--eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEe
Q 040533 46 YYSNMMDWGRNN-ILA-IAL------GLELYLWKQENGEVQKL--LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWD 115 (364)
Q Consensus 46 ~~~~~~~~~~~~-~~~-~~~------~~~i~iw~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 115 (364)
-.+.+++|+|++ +|+ ++. |+.|++|+..++..... ....+|...|++++|+|++.+ ++++.||+|+|||
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd 121 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWE 121 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC-
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEee
Confidence 358899999975 444 444 67899999887654322 233478899999999999865 5567899999999
Q ss_pred cCCcceee----eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-EEEE
Q 040533 116 AETSKLIR----NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-LLAS 190 (364)
Q Consensus 116 ~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 190 (364)
+.+++... ...+|...|.+++|+| ++++|++|+.|+.|++||+++++. ...+.+|...|.+++|++++. ++++
T Consensus 122 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~-~~~~~~h~~~v~~v~~s~~~~~~~~s 199 (357)
T 4g56_B 122 ILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAV-LKSYNAHSSEVNCVAACPGKDTIFLS 199 (357)
T ss_dssp -------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTCSSCEEE
T ss_pred ccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcE-EEEEcCCCCCEEEEEEccCCCceeee
Confidence 98876543 2347999999999999 999999999999999999987764 677889999999999999874 7899
Q ss_pred EeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEE
Q 040533 191 GGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLE 269 (364)
Q Consensus 191 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~ 269 (364)
++.|+.|++||+++.+... ...+..+...+.+++|+|++..++++++ .|+.|++||+++++.+..+..+ ..|.+++
T Consensus 200 ~~~dg~v~~wd~~~~~~~~-~~~~~~~~~~v~~v~~sp~~~~~la~g~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~ 276 (357)
T 4g56_B 200 CGEDGRILLWDTRKPKPAT-RIDFCASDTIPTSVTWHPEKDDTFACGD--ETGNVSLVNIKNPDSAQTSAVHSQNITGLA 276 (357)
T ss_dssp EETTSCEEECCTTSSSCBC-BCCCTTCCSCEEEEEECTTSTTEEEEEE--SSSCEEEEESSCGGGCEEECCCSSCEEEEE
T ss_pred eccCCceEEEECCCCceee-eeeeccccccccchhhhhcccceEEEee--cccceeEEECCCCcEeEEEeccceeEEEEE
Confidence 9999999999998764422 2233456778999999999888999887 8999999999999988888654 7799999
Q ss_pred EcCCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC-CCCEEEEEeCCCcEEEEEeeCCCCCc
Q 040533 270 WNRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP-DGLTVVSAAADETLRFWEAFGPSGSG 346 (364)
Q Consensus 270 ~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~ 346 (364)
|+|++. +|+++. .|+.|+|||+++++.+..+ +|.+.|++++|+| ++.+|++++.||+|++|++.+.....
T Consensus 277 ~sp~~~~~lasgs------~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~ 348 (357)
T 4g56_B 277 YSYHSSPFLASIS------EDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTE 348 (357)
T ss_dssp ECSSSSCCEEEEE------TTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC------
T ss_pred EcCCCCCEEEEEe------CCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc
Confidence 999985 566664 4999999999998877655 7999999999998 79999999999999999997654443
No 20
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-45 Score=312.96 Aligned_cols=283 Identities=19% Similarity=0.319 Sum_probs=224.7
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeee-cC-CCCCceEEEEcCCCCEEEEEecCCcEEEEecCC-------
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKV-TG-EDDFPTSISWSQDAKTLAVGYMASKLQLWDAET------- 118 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~------- 118 (364)
+.+++|+++.+++++.|+.|++||+.++.......+ .+ |...|.+++|+|++++|++|+.|++|+|||+..
T Consensus 17 v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~ 96 (330)
T 2hes_X 17 IWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFE 96 (330)
T ss_dssp EEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CC
T ss_pred eeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcccc
Confidence 778888888777888999999999987643333333 24 999999999999999999999999999999853
Q ss_pred cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc---ceeeeeecccCcEEEEEEcCCCCEEEEEeCCC
Q 040533 119 SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN---NVTSRINAHTAEVCGLKWSNEGNLLASGGDDN 195 (364)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 195 (364)
.+.+..+.+|...|.+++|+| ++++|++|+.|++|++||++... .....+.+|...|.+++|+|++.+|++++.|+
T Consensus 97 ~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~ 175 (330)
T 2hes_X 97 MDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175 (330)
T ss_dssp CEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred ceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence 345677889999999999999 99999999999999999995332 34566788999999999999999999999999
Q ss_pred eEEEEeCCCCCCCcceEEecccccceeEEEEccCCC-cEEEeecCCCCCeEEEEECCCC--------eEEEEEe--cCCC
Q 040533 196 LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF-NVLASGGGTQDGCIKIWNVQKG--------TCIHSVD--TKAQ 264 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~g~~d~~i~i~d~~~~--------~~~~~~~--~~~~ 264 (364)
.|++||.+... .+++..+.+|...|.+++|+|++. ..+++++ .|++|++||+.++ .+...+. +...
T Consensus 176 ~i~iW~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~ 252 (330)
T 2hes_X 176 TVRIWKDYDDD-WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS--DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ 252 (330)
T ss_dssp CEEEEEEETTE-EEEEEEECCCSSCEEEEEECCSSSSCEEEEEE--TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSC
T ss_pred eEEEEECCCCC-eeEEEEccCCCCcEEEEEecCCCCeeEEEEEe--CCCeEEEEEecCCCccccceeEEeeecccccccc
Confidence 99999976532 245778889999999999999842 5677776 8999999998754 3334443 4577
Q ss_pred eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc--eee-ecccccc-ceeEEeecC--CCCEEEEEeCCCcEEEEE
Q 040533 265 ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT--KWG-ELQHQTS-RILELSQSP--DGLTVVSAAADETLRFWE 338 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~--~~~-~~~~~~~-~i~~i~~~~--~~~~l~~~~~dg~i~vw~ 338 (364)
|.+++|++++ .++++.. |+.|++|+..+++ ... ...+|.. .|.+++|+| ++++|++|+.||+|++|+
T Consensus 253 v~~v~~s~~~-~l~s~~~------dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 253 VYNVAWGFNG-LIASVGA------DGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS 325 (330)
T ss_dssp EEEEEECTTS-CEEEEET------TSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred eEEEEEcCCC-EEEEEeC------CCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence 9999999766 6666643 9999999998763 332 3356776 899999999 789999999999999999
Q ss_pred eeC
Q 040533 339 AFG 341 (364)
Q Consensus 339 ~~~ 341 (364)
+..
T Consensus 326 ~~~ 328 (330)
T 2hes_X 326 LEK 328 (330)
T ss_dssp C--
T ss_pred ecc
Confidence 865
No 21
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.7e-45 Score=311.04 Aligned_cols=279 Identities=18% Similarity=0.260 Sum_probs=233.1
Q ss_pred eecccC-----CC-c--cEEEEEeCCeEEEEECCCCce-----eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEE
Q 040533 48 SNMMDW-----GR-N--NILAIALGLELYLWKQENGEV-----QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLW 114 (364)
Q Consensus 48 ~~~~~~-----~~-~--~~~~~~~~~~i~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 114 (364)
+.+++| ++ + .+++++.|+.|++||+.+.+. .....+.+|...|.+++|+|++.++++|+.|++|++|
T Consensus 24 V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lw 103 (343)
T 2xzm_R 24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLW 103 (343)
T ss_dssp EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEE
T ss_pred hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence 566665 43 3 377788899999999876531 2344567999999999999999999999999999999
Q ss_pred ecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee--eeecccCcEEEEEEcCCC-------
Q 040533 115 DAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS--RINAHTAEVCGLKWSNEG------- 185 (364)
Q Consensus 115 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~------- 185 (364)
|+.+++.+..+.+|...|.+++|+| ++++|++++.|+.|++||+..... .. ....|...|.+++|+|++
T Consensus 104 d~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 181 (343)
T 2xzm_R 104 DLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECK-FSSAEKENHSDWVSCVRYSPIMKSANKVQ 181 (343)
T ss_dssp ETTSSCEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEE-EECCTTTSCSSCEEEEEECCCCCSCSCCC
T ss_pred ECCCCcEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCce-eeeecccCCCceeeeeeeccccccccccC
Confidence 9999999999999999999999999 999999999999999999973321 11 123688899999999986
Q ss_pred ---CEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECC-CCeEEEEEec
Q 040533 186 ---NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ-KGTCIHSVDT 261 (364)
Q Consensus 186 ---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~ 261 (364)
.+|++++.|+.|++||.. .+....+.+|...|.+++|+|++. ++++++ .|+.|++||+. .......+..
T Consensus 182 ~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~h~~~v~~~~~s~~g~-~l~sgs--~dg~v~iwd~~~~~~~~~~~~~ 254 (343)
T 2xzm_R 182 PFAPYFASVGWDGRLKVWNTN----FQIRYTFKAHESNVNHLSISPNGK-YIATGG--KDKKLLIWDILNLTYPQREFDA 254 (343)
T ss_dssp SSCCEEEEEETTSEEEEEETT----TEEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTCEEEEEESSCCSSCSEEEEC
T ss_pred CCCCEEEEEcCCCEEEEEcCC----CceeEEEcCccccceEEEECCCCC-EEEEEc--CCCeEEEEECCCCcccceeecC
Confidence 789999999999999943 245677888999999999999984 566665 89999999994 4455556666
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee--ecc-----------ccccceeEEeecCCCCEEEEE
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG--ELQ-----------HQTSRILELSQSPDGLTVVSA 328 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~~-----------~~~~~i~~i~~~~~~~~l~~~ 328 (364)
...+.+++|+|++.+++++. |+.|++|++.+++... .+. +|...|.+++|+|+|++|++|
T Consensus 255 ~~~v~~v~~sp~~~~la~~~-------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg 327 (343)
T 2xzm_R 255 GSTINQIAFNPKLQWVAVGT-------DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG 327 (343)
T ss_dssp SSCEEEEEECSSSCEEEEEE-------SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred CCcEEEEEECCCCCEEEEEC-------CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEe
Confidence 77899999999999887664 8889999998766543 333 677889999999999999999
Q ss_pred eCCCcEEEEEeeCC
Q 040533 329 AADETLRFWEAFGP 342 (364)
Q Consensus 329 ~~dg~i~vw~~~~~ 342 (364)
+.||.|++|++.++
T Consensus 328 ~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 328 FTDGVIRTFSFETS 341 (343)
T ss_dssp ETTSEEEEEEEEEE
T ss_pred cCCceEEEEEEEcc
Confidence 99999999998764
No 22
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.9e-44 Score=308.79 Aligned_cols=271 Identities=17% Similarity=0.312 Sum_probs=242.0
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
..+.+|.+.|++++|+|++++|++|+.||+|+|||..+++....+..|...|.+++|+| ++.+|++|+.|+.+++|++.
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEECC
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEEEe
Confidence 45669999999999999999999999999999999999999999999999999999999 99999999999999999986
Q ss_pred cCc-----ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC-CcEE
Q 040533 161 VSN-----NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ-FNVL 234 (364)
Q Consensus 161 ~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 234 (364)
... .....+..|...|.+++|+|++..|++++.|++|++||+++. +.+..+.+|...|.+++|+|+. ..++
T Consensus 137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG---QLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp CCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred ccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 432 234566789999999999999999999999999999998764 4588888999999999998853 2677
Q ss_pred EeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc--cc
Q 040533 235 ASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ--TS 311 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~ 311 (364)
++++ .|+.|++||+++++++..+.. ...|.+++|+|++.+++++.. |+.|++||++..+.+..+..+ ..
T Consensus 214 ~sgs--~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~------D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 214 VSGG--CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD------DATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp EEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEEECCTTCCS
T ss_pred EEEe--CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC------CCeEEEEECCCCcEEEEEcCCCccc
Confidence 7776 899999999999999988865 477999999999999998854 999999999998877666543 34
Q ss_pred ceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 312 RILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 312 ~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.+.+++|+|+|++|++|+.|+.|++||+.+++.+..+.+|.+.|++++|||.
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spd 337 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD 337 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCC
Confidence 7899999999999999999999999999999888888999999999999995
No 23
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.9e-44 Score=303.90 Aligned_cols=271 Identities=21% Similarity=0.390 Sum_probs=242.0
Q ss_pred eeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 79 KLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 79 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
....+.+|...|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+| ++++|++++.|+.|++||
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEE
Confidence 3456679999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec
Q 040533 159 VRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
+++++. ...+.+|...|.+++|+|++++|++++.|+.|++||+++. +.+..+..|..+|.+++|+|++. ++++++
T Consensus 94 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 168 (312)
T 4ery_A 94 VSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGS-LIVSSS 168 (312)
T ss_dssp TTTCCE-EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-EEEEEE
T ss_pred CCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---EEEEEecCCCCcEEEEEEcCCCC-EEEEEe
Confidence 987764 6678899999999999999999999999999999998764 45778888999999999999985 566665
Q ss_pred CCCCCeEEEEECCCCeEEEEEec--CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEE
Q 040533 239 GTQDGCIKIWNVQKGTCIHSVDT--KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILEL 316 (364)
Q Consensus 239 g~~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i 316 (364)
.|+.|++||+++++.+..+.. ...+..++|+|++++++++.. |+.|++||+.+++.+..+.+|...+..+
T Consensus 169 --~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 240 (312)
T 4ery_A 169 --YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL------DNTLKLWDYSKGKCLKTYTGHKNEKYCI 240 (312)
T ss_dssp --TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET------TTEEEEEETTTTEEEEEECSSCCSSSCC
T ss_pred --CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC------CCeEEEEECCCCcEEEEEEecCCceEEE
Confidence 899999999999988877743 357999999999999998855 9999999999999999998887654332
Q ss_pred --e-ecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 317 --S-QSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 317 --~-~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
. ..+++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|.
T Consensus 241 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~ 290 (312)
T 4ery_A 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 290 (312)
T ss_dssp CEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSS
T ss_pred EEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCc
Confidence 3 3467889999999999999999999999999999999999999995
No 24
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.7e-45 Score=312.21 Aligned_cols=264 Identities=16% Similarity=0.170 Sum_probs=220.2
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC-----------cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET-----------SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKS 153 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 153 (364)
.|...|.+++|+|||++|++++ |+++++||... .........+...|.+++|+| + +.|++|+.||+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d-~~l~~~s~dg~ 104 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG-E-RGILVASDSGA 104 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET-T-TEEEEEETTSE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC-C-CeEEEEECCCE
Confidence 4667799999999999998887 77788886321 111122233667899999998 6 46889999999
Q ss_pred EEEEEcccCccee---eeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC
Q 040533 154 IINHDVRVSNNVT---SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ 230 (364)
Q Consensus 154 i~~~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 230 (364)
|++||+++++... ....+|...|++++|+|++++|++|+.|+.|++||+++. +.+..+.+|...|.+++|+|++
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~---~~~~~~~~h~~~V~~~~~~~~~ 181 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ---VVLSSYRAHAAQVTCVAASPHK 181 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECSSC
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCcCCceEEEEecCCC
Confidence 9999998876432 234589999999999999999999999999999998764 5688899999999999999999
Q ss_pred CcEEEeecCCCCCeEEEEECCCCeEEEEEec---CCCeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeec
Q 040533 231 FNVLASGGGTQDGCIKIWNVQKGTCIHSVDT---KAQICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 231 ~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
..++++++ .|++|++||+++++....+.. ...+.+++|+|++. ++++|. .|+.|++||+++++++..+
T Consensus 182 ~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~------~dg~v~~wd~~~~~~~~~~ 253 (344)
T 4gqb_B 182 DSVFLSCS--EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD------ENGTVSLVDTKSTSCVLSS 253 (344)
T ss_dssp TTEEEEEE--TTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE------TTSEEEEEESCC--CCEEE
T ss_pred CCceeeec--cccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec------cCCcEEEEECCCCcEEEEE
Confidence 88888887 899999999999998877643 34689999999654 556664 4999999999999999999
Q ss_pred cccccceeEEeecCCC-CEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 307 QHQTSRILELSQSPDG-LTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 307 ~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.+|...|++++|+|++ ++|++|+.||+|+|||+.+++. ..+.+|.+.|++++|||.
T Consensus 254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-~~~~~H~~~V~~v~~sp~ 310 (344)
T 4gqb_B 254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-FRSQAHRDFVRDATWSPL 310 (344)
T ss_dssp ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-EEECCCSSCEEEEEECSS
T ss_pred cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-EEEcCCCCCEEEEEEeCC
Confidence 9999999999999998 5899999999999999988764 456799999999999995
No 25
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.5e-44 Score=310.77 Aligned_cols=281 Identities=21% Similarity=0.357 Sum_probs=235.3
Q ss_pred eeecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeec----------------CCCCCceEEEEcCCCCEEEEEecCC
Q 040533 47 YSNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVT----------------GEDDFPTSISWSQDAKTLAVGYMAS 109 (364)
Q Consensus 47 ~~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~----------------~~~~~v~~~~~s~~~~~l~~~~~dg 109 (364)
.+.+++|+|+ .+++.+.++.+++|+..+++....+... .+...|.+++|+|++++|++|+.||
T Consensus 66 ~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~ 145 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 145 (393)
T ss_dssp CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCC
Confidence 4788999996 4777778899999999988764433211 1223489999999999999999999
Q ss_pred cEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEE
Q 040533 110 KLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLL 188 (364)
Q Consensus 110 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 188 (364)
.|+|||+.+++.+..+.+|...|.+++|+| ++++|++++.|++|++||+++++. ...+ .+...+.+++|+| ++++|
T Consensus 146 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~l 222 (393)
T 1erj_A 146 LIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQC-SLTL-SIEDGVTTVAVSPGDGKYI 222 (393)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECSTTCCEE
T ss_pred eEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCee-EEEE-EcCCCcEEEEEECCCCCEE
Confidence 999999999999999999999999999999 999999999999999999987764 3333 4667899999999 89999
Q ss_pred EEEeCCCeEEEEeCCCCCCCcceEEe-------cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-------
Q 040533 189 ASGGDDNLVHVWDHSKMSSSKCLHRF-------RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT------- 254 (364)
Q Consensus 189 ~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~------- 254 (364)
++++.|+.|++||+++.. .+..+ .+|...|.+++|+|++. ++++++ .|+.|++||+++..
T Consensus 223 ~~~s~d~~v~iwd~~~~~---~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s--~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 223 AAGSLDRAVRVWDSETGF---LVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGS--LDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp EEEETTSCEEEEETTTCC---EEEEEC------CCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEEC-----------
T ss_pred EEEcCCCcEEEEECCCCc---EEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCCCcccccC
Confidence 999999999999987653 24333 56889999999999984 566665 89999999997642
Q ss_pred -----EEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC------CC
Q 040533 255 -----CIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP------DG 322 (364)
Q Consensus 255 -----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~------~~ 322 (364)
+...+. +...|.+++|+|++.+++++.. |+.|++||..+++++..+.+|...|.+++|++ ++
T Consensus 297 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~------D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~ 370 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK------DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 370 (393)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC
T ss_pred CCCCcceEEEecccCcEEEEEECCCCCEEEEEeC------CCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCC
Confidence 333443 4467999999999999998854 99999999999999999999999999999876 68
Q ss_pred CEEEEEeCCCcEEEEEeeCC
Q 040533 323 LTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 323 ~~l~~~~~dg~i~vw~~~~~ 342 (364)
++|++|+.||+|++|++...
T Consensus 371 ~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 371 NVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEEEETTSEEEEEEEEEC
T ss_pred CEEEEECCCCcEEECccccc
Confidence 89999999999999998764
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-45 Score=317.23 Aligned_cols=295 Identities=18% Similarity=0.226 Sum_probs=219.7
Q ss_pred ecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec------CCcEEEEecCCcce
Q 040533 49 NMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM------ASKLQLWDAETSKL 121 (364)
Q Consensus 49 ~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~~~ 121 (364)
..++..+++ ++....+.....|++..... ..|+..|++++|||||++||+|+. |+.|++|+..++..
T Consensus 9 sg~d~g~~~~~~~~~g~~~~~~w~~p~~~p------~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~ 82 (357)
T 4g56_B 9 SGVDLGTENLYFQSNGSSKGSAWGRPVTAP------ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP 82 (357)
T ss_dssp -------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---
T ss_pred cCCCCCccceEEecCCCccccccCCCCCCc------ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc
Confidence 345555555 34445567788898764432 378999999999999999999997 77899999877654
Q ss_pred e----eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee---eeeecccCcEEEEEEcCCCCEEEEEeCC
Q 040533 122 I----RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT---SRINAHTAEVCGLKWSNEGNLLASGGDD 194 (364)
Q Consensus 122 ~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d 194 (364)
. .....|...|.+++|+| ++. +++++.||+|++||+.+++... ....+|...|.+++|+|++++|++++.|
T Consensus 83 ~~~~~~~~~~~~~~V~~~~~s~-d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d 160 (357)
T 4g56_B 83 NESLCTAGVQTEAGVTDVAWVS-EKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD 160 (357)
T ss_dssp CGGGCSEEEECSSCEEEEEEET-TTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred ceeEecccCCCCCCEEEEEEcC-CCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 3 33456889999999999 765 5567889999999998775422 2344799999999999999999999999
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe---cCCCeEEEEEc
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD---TKAQICGLEWN 271 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~~ 271 (364)
+.|++||+++. +.+..+.+|...|.+++|+|++..++++++ .|+.|++||++++++...+. ....+.+++|+
T Consensus 161 g~v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~--~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~s 235 (357)
T 4g56_B 161 FSVKVWDLSQK---AVLKSYNAHSSEVNCVAACPGKDTIFLSCG--EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWH 235 (357)
T ss_dssp SCEEEEETTTT---EEEEEECCCSSCEEEEEECTTCSSCEEEEE--TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEEC
T ss_pred CeEEEEECCCC---cEEEEEcCCCCCEEEEEEccCCCceeeeec--cCCceEEEECCCCceeeeeeeccccccccchhhh
Confidence 99999998764 558888999999999999999887888876 89999999999988776554 33569999999
Q ss_pred CCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCC-CEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 272 RHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG-LTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 272 ~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
|++. +++++. .|+.|++||+++++.+..+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++.+.. .
T Consensus 236 p~~~~~la~g~------~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~-~ 308 (357)
T 4g56_B 236 PEKDDTFACGD------ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD-L 308 (357)
T ss_dssp TTSTTEEEEEE------SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE-C
T ss_pred hcccceEEEee------cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE-C
Confidence 9865 555654 39999999999999999999999999999999987 5799999999999999998876554 4
Q ss_pred ccCCceeeeeeccC
Q 040533 350 SHLDGLLSLKVSPI 363 (364)
Q Consensus 350 ~~~~~v~~~~~sp~ 363 (364)
+|.+.|++|+|||.
T Consensus 309 ~H~~~V~~vafsP~ 322 (357)
T 4g56_B 309 SHRDFVTGVAWSPL 322 (357)
T ss_dssp CCSSCEEEEEECSS
T ss_pred CCCCCEEEEEEeCC
Confidence 79999999999983
No 27
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.9e-43 Score=295.86 Aligned_cols=278 Identities=22% Similarity=0.446 Sum_probs=239.2
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.|+.|++|+..+++.... +.+|...|.+++|+|++++|++|+.||.|++||+++++.+..
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 102 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 102 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh--hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence 37788888854 67778899999999998876544 458999999999999999999999999999999999999999
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+.+|...|.+++|+| ++++|++|+.|+.|++||+++++. ...+..|..+|.+++|+|++++|++++.|+.|++||+++
T Consensus 103 ~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 180 (312)
T 4ery_A 103 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180 (312)
T ss_dssp EECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEE-EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999 999999999999999999987764 667788999999999999999999999999999999876
Q ss_pred CCCCcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC-C---eEEEEEcCCccceee
Q 040533 205 MSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA-Q---ICGLEWNRHHKEILS 279 (364)
Q Consensus 205 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~---v~~~~~~~~~~~l~~ 279 (364)
.. .+..+ ..+...+..++|+|++.. +++++ .|+.|++||+++++.+..+..+. . +......+++.++++
T Consensus 181 ~~---~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 254 (312)
T 4ery_A 181 GQ---CLKTLIDDDNPPVSFVKFSPNGKY-ILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254 (312)
T ss_dssp CC---EEEEECCSSCCCEEEEEECTTSSE-EEEEE--TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred Cc---eeeEEeccCCCceEEEEECCCCCE-EEEEc--CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence 53 34443 345678999999999955 45554 79999999999999988886542 2 222333467778887
Q ss_pred eccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEe--CCCcEEEEEee
Q 040533 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA--ADETLRFWEAF 340 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~vw~~~ 340 (364)
+. .|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 255 g~------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 255 GS------EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CC------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EC------CCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 74 499999999999999999999999999999999999999987 69999999864
No 28
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-45 Score=321.91 Aligned_cols=290 Identities=18% Similarity=0.352 Sum_probs=246.6
Q ss_pred eeecccCCCcc--EEEE-----------EeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEE
Q 040533 47 YSNMMDWGRNN--ILAI-----------ALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQL 113 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~-----------~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 113 (364)
.+.+++|+|++ +++. +.|+.|++||+.+++.........|...|.+++|+|++++|++|+.||.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 46789999963 5555 4688999999998864333333368899999999999999999999999999
Q ss_pred EecCC----cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc------cee--eeeecccCcEEEEEE
Q 040533 114 WDAET----SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN------NVT--SRINAHTAEVCGLKW 181 (364)
Q Consensus 114 w~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------~~~--~~~~~~~~~v~~~~~ 181 (364)
||+.+ .+.+..+.+|...|.+++|+|.++++|++++.||.|++||+.+.. ... .....|...|.+++|
T Consensus 94 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 173 (416)
T 2pm9_A 94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW 173 (416)
T ss_dssp ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE
T ss_pred eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe
Confidence 99987 457788889999999999999338999999999999999998775 222 234578899999999
Q ss_pred cCC-CCEEEEEeCCCeEEEEeCCCCCCCcceEEeccc------ccceeEEEEccCCCcEEEeecCCCCC---eEEEEECC
Q 040533 182 SNE-GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH------RAAVKALAWCPYQFNVLASGGGTQDG---CIKIWNVQ 251 (364)
Q Consensus 182 ~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~g~~d~---~i~i~d~~ 251 (364)
+|+ +.+|++++.|+.|++||++.. +.+..+..+ ...|.+++|+|++..++++++ .|+ .|++||++
T Consensus 174 ~~~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 174 NQSLAHVFASAGSSNFASIWDLKAK---KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT--GSDNDPSILIWDLR 248 (416)
T ss_dssp CSSCTTEEEEESSSSCEEEEETTTT---EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE--CCSSSCCCCEEETT
T ss_pred CCCCCcEEEEEcCCCCEEEEECCCC---CcceEEeccccccccCCceEEEEECCCCCCEEEEEE--CCCCCceEEEEeCC
Confidence 998 789999999999999998764 346666655 788999999999877888876 787 99999999
Q ss_pred CC-eEEEEEe--cCCCeEEEEEcC-CccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCC-CEEE
Q 040533 252 KG-TCIHSVD--TKAQICGLEWNR-HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG-LTVV 326 (364)
Q Consensus 252 ~~-~~~~~~~--~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~ 326 (364)
++ .++..+. +...+.+++|+| ++.+++++.. |+.|++||+.+++++..+..|...|.+++|+|++ .+|+
T Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~------dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~ 322 (416)
T 2pm9_A 249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR------DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFA 322 (416)
T ss_dssp STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES------SSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEE
T ss_pred CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC------CCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEE
Confidence 86 5566665 557899999999 8999998854 9999999999999999999999999999999999 8999
Q ss_pred EEeCCCcEEEEEeeCCCCCcc
Q 040533 327 SAAADETLRFWEAFGPSGSGD 347 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~~~~ 347 (364)
+++.||.|++|++.+......
T Consensus 323 s~~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 323 CASFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp ECCSSSEEEEEESCCCCCSSC
T ss_pred EEecCCcEEEEEccCCCCCcc
Confidence 999999999999988765443
No 29
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.4e-44 Score=306.21 Aligned_cols=275 Identities=20% Similarity=0.350 Sum_probs=229.9
Q ss_pred eeeeecCCCC-CceEEEEcCCCCEEEEEecCCcEEEEecCCcceee---eeecCCCcEEEEEeecCCCCEEEEeeCCCcE
Q 040533 79 KLLKVTGEDD-FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR---NLEGHDKRVATASWNHWNGHILTSGSQDKSI 154 (364)
Q Consensus 79 ~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 154 (364)
.+..+.+|.. .|.+++|+|+|++||+|+.|+.|+|||+.++.... ...+|...|.+++|+| ++++|++|+.|+.+
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATT 85 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCcE
Confidence 3455668887 99999999999999999999999999998876432 2357999999999999 99999999999999
Q ss_pred EEEEcccCc-ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcE
Q 040533 155 INHDVRVSN-NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNV 233 (364)
Q Consensus 155 ~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 233 (364)
++||+.... .....+.+|...|.+++|+|++++|++++.|+.|++||++.......+..+.+|...|.+++|+|++. +
T Consensus 86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~ 164 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-L 164 (345)
T ss_dssp EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-C
T ss_pred EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-E
Confidence 999988664 34567889999999999999999999999999999999987655566777889999999999999985 5
Q ss_pred EEeecCCCCCeEEEEECCCCeE--EEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC----------
Q 040533 234 LASGGGTQDGCIKIWNVQKGTC--IHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM---------- 300 (364)
Q Consensus 234 ~~~~~g~~d~~i~i~d~~~~~~--~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~---------- 300 (364)
+++++ .|+.|++||.++++. ...+.. ...|.+++|+|++++|+++.. |+.|++|+....
T Consensus 165 l~s~s--~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~------D~~v~iW~~~~~~~~~~~~~~~ 236 (345)
T 3fm0_A 165 LASAS--YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD------DRTVRIWRQYLPGNEQGVACSG 236 (345)
T ss_dssp EEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEEEECTTCTTCCCCC-
T ss_pred EEEEe--CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC------CCeEEEeccccCCCCccceeec
Confidence 56655 899999999988754 345543 478999999999999998854 999999996322
Q ss_pred -----ceeeeccc-cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCc---------ceeccCCceeeeeeccC
Q 040533 301 -----TKWGELQH-QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSG---------DFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 301 -----~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~---------~~~~~~~~v~~~~~sp~ 363 (364)
+++..+.+ |...|.+++|+|++..|++++.|+.|++|+........ ...+|.+.|++++|+|.
T Consensus 237 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~ 314 (345)
T 3fm0_A 237 SDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK 314 (345)
T ss_dssp --CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSS
T ss_pred cCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCC
Confidence 22333443 78899999999999999999999999999998654221 12478999999999995
No 30
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.8e-43 Score=301.30 Aligned_cols=284 Identities=22% Similarity=0.374 Sum_probs=246.9
Q ss_pred eeecccCCCc--c-EEEEEeCCeEEEEECCCCce---eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc
Q 040533 47 YSNMMDWGRN--N-ILAIALGLELYLWKQENGEV---QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 47 ~~~~~~~~~~--~-~~~~~~~~~i~iw~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 120 (364)
.+++++|+|+ + +++++.|+.|++||+.+.+. .....+.+|...|.+++|+|++++|++|+.|+.|++|+.....
T Consensus 40 ~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~ 119 (340)
T 4aow_A 40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT 119 (340)
T ss_dssp CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccc
Confidence 4888999975 3 56788899999999987643 3345567999999999999999999999999999999999998
Q ss_pred eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC--CEEEEEeCCCeEE
Q 040533 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG--NLLASGGDDNLVH 198 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~ 198 (364)
.......+...+..+.+++ ++.+|++++.|+.+++||+...........+|...+..++|++++ .++++++.|+.|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~ 198 (340)
T 4aow_A 120 TTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198 (340)
T ss_dssp EEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred eeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEE
Confidence 8888888889999999999 899999999999999999987766666677899999999999864 5789999999999
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCcccee
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEIL 278 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 278 (364)
+||++.. +.+..+.+|...|.+++|+|++ .++++++ .|+.|++||+++.+.+..+..+..+.++.|+|++.+++
T Consensus 199 i~d~~~~---~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 272 (340)
T 4aow_A 199 VWNLANC---KLKTNHIGHTGYLNTVTVSPDG-SLCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 272 (340)
T ss_dssp EEETTTT---EEEEEECCCSSCEEEEEECTTS-SEEEEEE--TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEE
T ss_pred EEECCCC---ceeeEecCCCCcEEEEEECCCC-CEEEEEe--CCCeEEEEEeccCceeeeecCCceEEeeecCCCCceee
Confidence 9998764 4578888999999999999998 4666665 89999999999999999999999999999999987776
Q ss_pred eeccCCccCCCCeEEEeeCCCCceeeecc---------ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 279 SGHGFSSSGDGQKLCLWKYPHMTKWGELQ---------HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---------~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
++. |+.|++||++++..+..+. .|...|++++|+|+|++|++|+.||.|+|||+.++++
T Consensus 273 ~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGtr 340 (340)
T 4aow_A 273 AAT-------GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340 (340)
T ss_dssp EEE-------TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred ccC-------CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence 553 9999999999877665543 5788999999999999999999999999999998763
No 31
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.2e-43 Score=322.22 Aligned_cols=294 Identities=22% Similarity=0.437 Sum_probs=255.1
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.|+.|++||.... . ...+.+|...|.+++|+|++++|++++.||.|++||... ..+..
T Consensus 264 ~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~-~--~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~ 339 (577)
T 2ymu_A 264 SVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-L--LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQT 339 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSC-E--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-E--EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEE
Confidence 36778888863 677788999999997543 3 334568999999999999999999999999999999764 55667
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+.+|...+.+++|+| ++++|++++.||.|++||.. + .....+.+|...|.+++|+|++++|++++.|+.|++||..
T Consensus 340 ~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~-~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~- 415 (577)
T 2ymu_A 340 LTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN- 415 (577)
T ss_dssp ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT-C-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-
T ss_pred EeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCC-C-CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-
Confidence 788999999999999 99999999999999999964 3 3467788999999999999999999999999999999953
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccC
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
.+.+..+.+|...|.+++|+|++. ++++++ .|+.|++||.. ++.+..+. +...+.+++|+|++++++++..
T Consensus 416 ---~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~--~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~- 487 (577)
T 2ymu_A 416 ---GQLLQTLTGHSSSVWGVAFSPDDQ-TIASAS--DDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASD- 487 (577)
T ss_dssp ---CCEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEET-
T ss_pred ---CCEEEEecCCCCCeEEEEECCCCC-EEEEEc--CCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-
Confidence 345778889999999999999985 556655 79999999974 55666654 4578999999999999998854
Q ss_pred CccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|+.|++||. +++.+..+.+|...|++++|+|+|++|++++.||.|++||. +++.+..+.+|.+.|++++|+|.
T Consensus 488 -----d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~d 560 (577)
T 2ymu_A 488 -----DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD 560 (577)
T ss_dssp -----TSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTT
T ss_pred -----CCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCC
Confidence 999999994 68889999999999999999999999999999999999996 56778888999999999999995
No 32
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-42 Score=299.52 Aligned_cols=302 Identities=14% Similarity=0.191 Sum_probs=256.9
Q ss_pred CCCcEEeeCCCCCCCcceeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec
Q 040533 30 FQKEARILDAPNLRNDYYSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM 107 (364)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 107 (364)
.....+......+.. .+.+++|+|++ +++++.|+.|++||+.+++... .+.+|...|.+++|+|++++|++++.
T Consensus 19 ~G~~~~~~~l~~h~~--~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~ 94 (369)
T 3zwl_B 19 QGSHMKAIKLTGHER--PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG--TLDGHTGTIWSIDVDCFTKYCVTGSA 94 (369)
T ss_dssp SCCSEEEEEEECCSS--CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred eccccccEEEEEeec--eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh--hhhhcCCcEEEEEEcCCCCEEEEEeC
Confidence 333444433334333 37888888853 6667789999999999887644 45589999999999999999999999
Q ss_pred CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC-----CcEEEEEcccCcc----------eeeeeecc
Q 040533 108 ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD-----KSIINHDVRVSNN----------VTSRINAH 172 (364)
Q Consensus 108 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~----------~~~~~~~~ 172 (364)
||.|++||+.+++.+..+. +...+.+++|+| ++.++++++.+ |.|.+||+..... ....+..|
T Consensus 95 dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 95 DYSIKLWDVSNGQCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp TTEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred CCeEEEEECCCCcEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 9999999999999998888 889999999999 99999999998 9999999987642 23344455
Q ss_pred cC--cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEEC
Q 040533 173 TA--EVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 173 ~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 250 (364)
.. .+.+++|+|++++|++++.||.|++||++.. ...+..+..|...|.+++|+|++. ++++++ .|+.|++||+
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~~i~v~d~ 247 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN--YEYVDSIDLHEKSISDMQFSPDLT-YFITSS--RDTNSFLVDV 247 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT--TEEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEET
T ss_pred cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC--cEeEEEEecCCCceeEEEECCCCC-EEEEec--CCceEEEEEC
Confidence 55 8999999999999999999999999998763 345777888999999999999985 455554 7999999999
Q ss_pred CCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCC--------------eEEEeeCCCCceeeeccccccceeEE
Q 040533 251 QKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ--------------KLCLWKYPHMTKWGELQHQTSRILEL 316 (364)
Q Consensus 251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~--------------~i~i~d~~~~~~~~~~~~~~~~i~~i 316 (364)
++++.+..+.....+..++|+|++++++++.. ++ .+++||..+++.+..+.+|...|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~ 321 (369)
T 3zwl_B 248 STLQVLKKYETDCPLNTAVITPLKEFIILGGG------QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTV 321 (369)
T ss_dssp TTCCEEEEEECSSCEEEEEECSSSSEEEEEEC------CC-------------CEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCCceeeeecCCCCceeEEecCCCceEEEeec------CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEE
Confidence 99999999998899999999999999998864 44 89999999999999999999999999
Q ss_pred eecCCCCEEEEEeCCCcEEEEEeeCCCCCcce
Q 040533 317 SQSPDGLTVVSAAADETLRFWEAFGPSGSGDF 348 (364)
Q Consensus 317 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 348 (364)
+|+|++++|++++.||.|++|++..+.....+
T Consensus 322 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 322 AISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp EECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred EECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 99999999999999999999999876544433
No 33
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.9e-43 Score=327.34 Aligned_cols=279 Identities=22% Similarity=0.346 Sum_probs=239.2
Q ss_pred eecccCCCcc---EEEEEeCCeEEEEECCCCce---eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 48 SNMMDWGRNN---ILAIALGLELYLWKQENGEV---QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 48 ~~~~~~~~~~---~~~~~~~~~i~iw~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+.+++|++++ +++++.|+.|++|++.+... .....+.+|...|.+++|+|++++|++|+.||.|+|||+.+++.
T Consensus 385 V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~ 464 (694)
T 3dm0_A 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS 464 (694)
T ss_dssp EEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 7788888642 66788899999999976432 22345669999999999999999999999999999999999999
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee--eeeecccCcEEEEEEcCCC--CEEEEEeCCCeE
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT--SRINAHTAEVCGLKWSNEG--NLLASGGDDNLV 197 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i 197 (364)
...+.+|...|.+++|+| ++++|++|+.|++|++||........ ....+|...|.+++|+|++ ..+++++.|+.|
T Consensus 465 ~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v 543 (694)
T 3dm0_A 465 TRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543 (694)
T ss_dssp EEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCE
T ss_pred eeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeE
Confidence 999999999999999999 99999999999999999986443211 1224688899999999986 589999999999
Q ss_pred EEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccce
Q 040533 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEI 277 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l 277 (364)
++||++.. +....+.+|.+.|.+++|+|++ .++++++ .|+.|++||+++++.+..+..+..+.+++|+|++.++
T Consensus 544 ~vwd~~~~---~~~~~~~~h~~~v~~v~~spdg-~~l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l 617 (694)
T 3dm0_A 544 KVWNLSNC---KLRSTLAGHTGYVSTVAVSPDG-SLCASGG--KDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWL 617 (694)
T ss_dssp EEEETTTC---CEEEEECCCSSCEEEEEECTTS-SEEEEEE--TTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEE
T ss_pred EEEECCCC---cEEEEEcCCCCCEEEEEEeCCC-CEEEEEe--CCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEE
Confidence 99998764 4577888999999999999998 5666766 8999999999999999888888899999999999988
Q ss_pred eeeccCCccCCCCeEEEeeCCCCceeeeccccc-------------------cceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 278 LSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT-------------------SRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-------------------~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
+++. ++.|++||+.+++.+..+..+. ..+++++|+|+|++|++|+.||.|++|+
T Consensus 618 ~~~~-------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 618 CAAT-------EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690 (694)
T ss_dssp EEEE-------TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEc-------CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence 8765 7789999999988877664321 1378899999999999999999999999
Q ss_pred ee
Q 040533 339 AF 340 (364)
Q Consensus 339 ~~ 340 (364)
+.
T Consensus 691 i~ 692 (694)
T 3dm0_A 691 IG 692 (694)
T ss_dssp C-
T ss_pred cc
Confidence 85
No 34
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.9e-44 Score=311.92 Aligned_cols=272 Identities=15% Similarity=0.265 Sum_probs=235.5
Q ss_pred eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
...+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+| ++++|++|+.|+.+++||+
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEEEC
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEEEC
Confidence 345669999999999999999999999999999999999999999999999999999999 9999999999999999998
Q ss_pred ccCc------ceeeeeecccCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCCcceEEe-----cccccceeEEEEc
Q 040533 160 RVSN------NVTSRINAHTAEVCGLKWSNE-GNLLASGGDDNLVHVWDHSKMSSSKCLHRF-----RDHRAAVKALAWC 227 (364)
Q Consensus 160 ~~~~------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~ 227 (364)
.+.. .....+.+|.+.+.++.|+|+ +..|++|+.|++|++||++++. .+..+ .+|...|.+++|+
T Consensus 138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~---~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ---RISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC---EEEEECCCSSSSCCSCEEEEEEC
T ss_pred CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc---EEEEeecccCCCCccCeEEEEee
Confidence 7532 234567789999999999996 4579999999999999988754 34444 5688999999998
Q ss_pred cCCCcEEEeecCCCCCeEEEEECC-CCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeee
Q 040533 228 PYQFNVLASGGGTQDGCIKIWNVQ-KGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE 305 (364)
Q Consensus 228 ~~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 305 (364)
+.+..++++++ .|+.|++||++ .++.+..+.. ...|.+++|+|++++++++.. |+.|++||+++++.+..
T Consensus 215 ~~~~~~l~sgs--~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~------D~~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 215 SLNANMFISGS--CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD------DGTCRLFDMRTGHQLQV 286 (380)
T ss_dssp SSSCCEEEEEE--TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS------SSCEEEEETTTTEEEEE
T ss_pred cCCCCEEEEEE--CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC------CCeEEEEECCCCcEEEE
Confidence 86667888877 89999999998 4566666654 478999999999999998854 99999999999988877
Q ss_pred ccccc-------cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcce----eccCCceeeeeeccC
Q 040533 306 LQHQT-------SRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF----VSHLDGLLSLKVSPI 363 (364)
Q Consensus 306 ~~~~~-------~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~----~~~~~~v~~~~~sp~ 363 (364)
+..+. ..|++++|+|+|++|++|+.||.|++||+..++....+ .+|.+.|++++|+|.
T Consensus 287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 355 (380)
T 3iz6_a 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD 355 (380)
T ss_dssp ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSS
T ss_pred ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCC
Confidence 65432 24899999999999999999999999999888776555 579999999999995
No 35
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.8e-43 Score=305.87 Aligned_cols=282 Identities=14% Similarity=0.191 Sum_probs=243.3
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECCCCc----eeeeeeecCCCCCceEEEEcCC----C---CEEEEEecCCcEEEEe
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQENGE----VQKLLKVTGEDDFPTSISWSQD----A---KTLAVGYMASKLQLWD 115 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~----~~~~~~~~~~~~~v~~~~~s~~----~---~~l~~~~~dg~i~iw~ 115 (364)
.+.+++|+|+.+++++.|+.|++||+.+++ ......+.+|...|.+++|+|+ + ++|++++.||.|++||
T Consensus 18 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~ 97 (397)
T 1sq9_A 18 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYR 97 (397)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEE
T ss_pred CeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEE
Confidence 488899999778888899999999999887 2234455689999999999999 9 9999999999999999
Q ss_pred cCCcce-----eeeeecC-----CCcEEEEEee----cCCCCE-EEEeeCCCcEEEEEccc------Ccceee-----ee
Q 040533 116 AETSKL-----IRNLEGH-----DKRVATASWN----HWNGHI-LTSGSQDKSIINHDVRV------SNNVTS-----RI 169 (364)
Q Consensus 116 ~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~~~~dg~i~~~d~~~------~~~~~~-----~~ 169 (364)
+.+++. ...+..| ...|.+++|+ | ++++ |++++.||.|++||++. ... .. .+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~ 175 (397)
T 1sq9_A 98 ITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPTLEL 175 (397)
T ss_dssp EEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCEEEE
T ss_pred ccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccce-eeccCccee
Confidence 998887 7888888 5899999999 8 8999 99999999999999987 443 22 44
Q ss_pred -------ecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc---c---ccceeEEEEccCCCcEEEe
Q 040533 170 -------NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD---H---RAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 170 -------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~~~ 236 (364)
..|...|.+++|+|++ ++++++.|+.|++||++.. +.+..+.. | ...|.+++|+|++. ++++
T Consensus 176 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~ 250 (397)
T 1sq9_A 176 QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL---RPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAI 250 (397)
T ss_dssp EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT---EEEEEEECCC---CCCCCEEEEEECSSTT-EEEE
T ss_pred eeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC---ceeEEEeccccccccCCccceEEECCCCC-EEEE
Confidence 3488899999999999 9999999999999998764 45777777 8 89999999999985 5555
Q ss_pred ecCCCC---CeEEEEECCCCeEEEEEe--------------cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC
Q 040533 237 GGGTQD---GCIKIWNVQKGTCIHSVD--------------TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 237 ~~g~~d---~~i~i~d~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
++ .| +.|++||+++++.+..+. +...+.+++|+|++++++++.. |+.|++||+.+
T Consensus 251 ~~--~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~ 322 (397)
T 1sq9_A 251 AH--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW------DGKLRFWDVKT 322 (397)
T ss_dssp EE--EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET------TSEEEEEETTT
T ss_pred Ee--cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC------CCeEEEEEcCC
Confidence 54 68 999999999999998886 4578999999999999998854 99999999999
Q ss_pred Cceeeecc------cc---------------ccceeEEeecCCC----------CEEEEEeCCCcEEEEEeeCCC
Q 040533 300 MTKWGELQ------HQ---------------TSRILELSQSPDG----------LTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 300 ~~~~~~~~------~~---------------~~~i~~i~~~~~~----------~~l~~~~~dg~i~vw~~~~~~ 343 (364)
++.+..+. .| ...|++++|+|++ ++|++++.||.|++|++.+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 99999998 77 8999999999998 799999999999999998763
No 36
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.9e-42 Score=300.72 Aligned_cols=263 Identities=19% Similarity=0.379 Sum_probs=227.1
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCC------------------cEEEEEeecCCCCEEE
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDK------------------RVATASWNHWNGHILT 146 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~~l~ 146 (364)
+|...|.+++|+|||++||+|+ ++.+++|++.+++.+..+..|.. .|.+++|+| ++++|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC-CCCEEE
Confidence 6999999999999999999986 68999999999988877765432 499999999 999999
Q ss_pred EeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEE
Q 040533 147 SGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAW 226 (364)
Q Consensus 147 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 226 (364)
+|+.|+.|++||+.+++ ....+.+|...|.+++|+|++++|++++.|+.|++||+++.. ....+. +...+.+++|
T Consensus 140 s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~---~~~~~~-~~~~v~~~~~ 214 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---CSLTLS-IEDGVTTVAV 214 (393)
T ss_dssp EEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEEE-CSSCEEEEEE
T ss_pred EEcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe---eEEEEE-cCCCcEEEEE
Confidence 99999999999998765 466788999999999999999999999999999999987643 344443 5677999999
Q ss_pred ccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe--------cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD--------TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 227 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
+|....++++++ .|+.|++||+++++.+..+. +...|.+++|+|++++++++.. |+.|++||+.
T Consensus 215 ~~~~~~~l~~~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~------d~~v~~wd~~ 286 (393)
T 1erj_A 215 SPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL------DRSVKLWNLQ 286 (393)
T ss_dssp CSTTCCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET------TSEEEEEEC-
T ss_pred ECCCCCEEEEEc--CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC------CCEEEEEECC
Confidence 994446777776 89999999999998887762 3467999999999999998854 9999999997
Q ss_pred CC------------ceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 299 HM------------TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 299 ~~------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
+. .+...+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred CCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 53 34556778999999999999999999999999999999999999889999999999999987
No 37
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.3e-43 Score=311.87 Aligned_cols=292 Identities=15% Similarity=0.201 Sum_probs=233.2
Q ss_pred eeecccCCCc--c-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCccee
Q 040533 47 YSNMMDWGRN--N-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 47 ~~~~~~~~~~--~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
.+++++|+|. + +++++.||.|+|||+.+++......+.+|.+.|++++|+| ++++|++|+.||+|++||++++...
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~ 200 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR 200 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence 4889999983 3 5567789999999999887766777779999999999998 6899999999999999999876543
Q ss_pred eeeec--CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-EEEEEeCCCeEEE
Q 040533 123 RNLEG--HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-LLASGGDDNLVHV 199 (364)
Q Consensus 123 ~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i 199 (364)
..... +...+.+++|+| ++.+|++|+.||.|++||++.. .+..+.+|...|.+++|+|++. ++++++.|+.|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~i 277 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKI 277 (435)
T ss_dssp EEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCE
T ss_pred EEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCcceeeE
Confidence 33332 344678899999 9999999999999999998743 3566789999999999999875 7889999999999
Q ss_pred EeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC-------CeEEEEEcC
Q 040533 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA-------QICGLEWNR 272 (364)
Q Consensus 200 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-------~v~~~~~~~ 272 (364)
||++............+|...|.+++|+|++. ++++++ .|+.|++||+.+++....+..+. .+....|+|
T Consensus 278 wd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (435)
T 4e54_B 278 WDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTD--QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP 354 (435)
T ss_dssp EETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEEE--SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS
T ss_pred EecccccccceEEEeeeccccccceeECCCCC-eeEEEc--CCCEEEEEECCCCccceEEecccccccccceeEEEEEcC
Confidence 99987665444555567999999999999985 556655 89999999999988777664321 244567888
Q ss_pred Cccceeeecc------CCccCCCCeEEEeeCCCCceeeecc-ccccceeEE-eecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 273 HHKEILSGHG------FSSSGDGQKLCLWKYPHMTKWGELQ-HQTSRILEL-SQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 273 ~~~~l~~~~~------~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~i-~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
++..++++.. ...+.+++.|++||..+++.+..+. +|...|.++ +|+|+|++|++|+ |+.|+||++++++.
T Consensus 355 ~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 355 RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 8877776532 1233456789999999999988764 677888887 6999999999876 78999999988765
Q ss_pred C
Q 040533 345 S 345 (364)
Q Consensus 345 ~ 345 (364)
.
T Consensus 434 r 434 (435)
T 4e54_B 434 R 434 (435)
T ss_dssp -
T ss_pred e
Confidence 3
No 38
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-42 Score=294.07 Aligned_cols=270 Identities=23% Similarity=0.398 Sum_probs=216.7
Q ss_pred eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc--ceeeee-ec-CCCcEEEEEeecCCCCEEEEeeCCCcEE
Q 040533 80 LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS--KLIRNL-EG-HDKRVATASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
...+.+|.+.|.+++|+|+ +||+|+.|+.|++||+..+ +....+ .. |...|.+++|+| ++++|++|+.|++|+
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~ 83 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVS 83 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEE
Confidence 3456699999999999987 9999999999999999875 344555 34 999999999999 999999999999999
Q ss_pred EEEcccC------cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-CCCcceEEecccccceeEEEEcc
Q 040533 156 NHDVRVS------NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM-SSSKCLHRFRDHRAAVKALAWCP 228 (364)
Q Consensus 156 ~~d~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~ 228 (364)
+||++.. ......+.+|...|.+++|+|++++|++++.|+.|++||++.. ...+.+..+.+|...|.+++|+|
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p 163 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163 (330)
T ss_dssp EEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence 9998532 1345567899999999999999999999999999999998533 33456777889999999999999
Q ss_pred CCCcEEEeecCCCCCeEEEEECCCC--eEEEEEec-CCCeEEEEEcCC--ccceeeeccCCccCCCCeEEEeeCCCC---
Q 040533 229 YQFNVLASGGGTQDGCIKIWNVQKG--TCIHSVDT-KAQICGLEWNRH--HKEILSGHGFSSSGDGQKLCLWKYPHM--- 300 (364)
Q Consensus 229 ~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~-~~~v~~~~~~~~--~~~l~~~~~~~~~~~~~~i~i~d~~~~--- 300 (364)
++ .++++++ .|++|++||..++ +++..+.. ...|.+++|+|+ +..++++. .|+.|++||+..+
T Consensus 164 ~~-~~l~s~s--~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s------~D~~v~iw~~~~~~~~ 234 (330)
T 2hes_X 164 SE-ALLASSS--YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS------DDSTVRVWKYMGDDED 234 (330)
T ss_dssp SS-SEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE------TTSCEEEEEEEEECTT
T ss_pred CC-CEEEEEc--CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe------CCCeEEEEEecCCCcc
Confidence 98 5667766 8999999999876 56667754 478999999998 66777774 4999999998754
Q ss_pred -----ceeeeccc-cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC--CCc-ceeccCC-ceeeeeecc
Q 040533 301 -----TKWGELQH-QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS--GSG-DFVSHLD-GLLSLKVSP 362 (364)
Q Consensus 301 -----~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~--~~~-~~~~~~~-~v~~~~~sp 362 (364)
.....+.. |...|.+++|++++ +|++++.||.|++|+..+++ ... .+.+|.. .|.+++|+|
T Consensus 235 ~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~ 305 (330)
T 2hes_X 235 DQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE 305 (330)
T ss_dssp SCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred ccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEec
Confidence 33444554 88999999999765 89999999999999998763 222 2346776 899999998
No 39
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.1e-42 Score=290.73 Aligned_cols=269 Identities=20% Similarity=0.272 Sum_probs=231.0
Q ss_pred eeeeecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEecCC-----cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC
Q 040533 79 KLLKVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDAET-----SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK 152 (364)
Q Consensus 79 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 152 (364)
...++.+|.+.|++++|+|++ ++|++|+.|++|++|++.. +..+..+.+|...|.+++|+| ++.+|++|+.|+
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~ 87 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDK 87 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECC-CCCEEEEEeCCC
Confidence 344577999999999999965 8999999999999999864 345677889999999999999 999999999999
Q ss_pred cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCC-
Q 040533 153 SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF- 231 (364)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 231 (364)
+|++||+.+++. ...+.+|...|.+++|+|++.+|++++.|+.|++||++. ..+..+.+|...|.++.|.|...
T Consensus 88 ~v~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~----~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 88 TLRLWDVATGET-YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG----QCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp EEEEEETTTTEE-EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS----CEEEEECCCSSCEEEEEECCC---
T ss_pred EEEEEECCCCCe-eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeEEEEeccCCcEEEEEEccCCCC
Confidence 999999997764 677889999999999999999999999999999999863 45778889999999999998642
Q ss_pred ----cEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec
Q 040533 232 ----NVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 232 ----~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
..+++++ .|+.|++||+++++....+.. ...|.+++|+|++++++++.. |+.|++||+.+++.+..+
T Consensus 163 ~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~------dg~i~iwd~~~~~~~~~~ 234 (319)
T 3frx_A 163 DDDSVTIISAG--NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK------DGEIMLWNLAAKKAMYTL 234 (319)
T ss_dssp ---CCEEEEEE--TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET------TCEEEEEETTTTEEEEEE
T ss_pred CCCccEEEEEe--CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCcEEEEe
Confidence 3677776 899999999999988887764 478999999999999999854 999999999999999888
Q ss_pred cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcce--------eccCCceeeeeeccC
Q 040533 307 QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF--------VSHLDGLLSLKVSPI 363 (364)
Q Consensus 307 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~--------~~~~~~v~~~~~sp~ 363 (364)
..+ ..|.+++|+|++.+|++++.+ .+++|++........+ ..|...+.+++|||.
T Consensus 235 ~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 297 (319)
T 3frx_A 235 SAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297 (319)
T ss_dssp ECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTT
T ss_pred cCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCC
Confidence 754 679999999999999988765 5999998765433322 245678999999995
No 40
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.9e-42 Score=312.39 Aligned_cols=294 Identities=22% Similarity=0.450 Sum_probs=255.2
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.|+.|++||... +. +..+.+|...|.+++|+|+++.|++++.|+.|++|+. +++....
T Consensus 223 ~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~--~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~ 298 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QL--LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQT 298 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTS-CE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CE--EEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEE
Confidence 36778888853 77788899999999654 33 3445689999999999999999999999999999996 4677888
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+.+|...|.+++|+| +++.|++++.|+.|++||..... ...+.+|...+.+++|+|++++|++++.|+.|++||..
T Consensus 299 ~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~- 374 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQH--LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN- 374 (577)
T ss_dssp ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-
T ss_pred EecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe--eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-
Confidence 899999999999999 99999999999999999986443 56677899999999999999999999999999999953
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccC
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
.+.+..+.+|...|.+++|+|+++. +++++ .|+.|++||. +++.+..+. +...+.+++|+|++++++++..
T Consensus 375 ---~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~--~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~- 446 (577)
T 2ymu_A 375 ---GQLLQTLTGHSSSVRGVAFSPDGQT-IASAS--DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASD- 446 (577)
T ss_dssp ---CCEEEEEECCSSCEEEEEECTTSSC-EEEEE--TTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred ---CCEEEEecCCCCCeEEEEECCCCCE-EEEEe--CCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcC-
Confidence 3457788889999999999999965 45554 7999999996 566666665 4578999999999999998854
Q ss_pred CccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||. +++.+..+.+|.+.|++++|||.
T Consensus 447 -----d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~d 519 (577)
T 2ymu_A 447 -----DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD 519 (577)
T ss_dssp -----TSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTT
T ss_pred -----CCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCC
Confidence 999999996 57788889999999999999999999999999999999995 56777888999999999999995
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.8e-42 Score=305.00 Aligned_cols=298 Identities=16% Similarity=0.215 Sum_probs=245.0
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
...++|+|+ .+++++.|+.|++||..+++...... .| ..+....|+|++++|++|+.||.|++||+.+++....+
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK--RA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC--SC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe--cC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 456788885 48888899999999998876543332 44 44555578999999999999999999999999988888
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
.+|...|.+++|+| ++++|++++.|+.|++||+++++. ...+.+|...|.+++|+|++++|++++.|+.|++||+++.
T Consensus 136 ~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 213 (420)
T 3vl1_A 136 QAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 213 (420)
T ss_dssp TSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred ccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC
Confidence 89999999999999 999999999999999999987765 6677899999999999999999999999999999998865
Q ss_pred CCCcceEEecc---cc---------------------cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 206 SSSKCLHRFRD---HR---------------------AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 206 ~~~~~~~~~~~---~~---------------------~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
. .+..+.. +. ..+.+++|+|++ .++++++ .||.|++||+++++....+..
T Consensus 214 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~~ 287 (420)
T 3vl1_A 214 T---TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGH--VSGVITVHNVFSKEQTIQLPS 287 (420)
T ss_dssp E---EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEE--TTSCEEEEETTTCCEEEEECC
T ss_pred c---eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEc--CCCeEEEEECCCCceeEEccc
Confidence 3 3555543 33 344555567877 4556655 799999999999988877753
Q ss_pred --CCCeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCCCce-eeeccc-cccceeEEeecCCCCEEEEEeCCCcEEE
Q 040533 262 --KAQICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTK-WGELQH-QTSRILELSQSPDGLTVVSAAADETLRF 336 (364)
Q Consensus 262 --~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~v 336 (364)
...+.+++|+|++. +++++.. |+.|++||+++++. +..+.. |...|.++.+ +++++|++++.||.|++
T Consensus 288 ~~~~~v~~~~~~~~~~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~i 360 (420)
T 3vl1_A 288 KFTCSCNSLTVDGNNANYIYAGYE------NGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKL 360 (420)
T ss_dssp TTSSCEEEEEECSSCTTEEEEEET------TSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEE
T ss_pred ccCCCceeEEEeCCCCCEEEEEeC------CCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEE
Confidence 46799999999999 8887754 99999999998754 667766 6677888855 57889999999999999
Q ss_pred EEeeCCCC---------CcceeccCCceeeeeeccC
Q 040533 337 WEAFGPSG---------SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 337 w~~~~~~~---------~~~~~~~~~~v~~~~~sp~ 363 (364)
|++..+.. ...+..|.+.|.+++|+|.
T Consensus 361 w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 396 (420)
T 3vl1_A 361 DIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSD 396 (420)
T ss_dssp EEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECC
T ss_pred EeccCCCCCccceeccCccEEccCCcceEEEEEccC
Confidence 99987533 2344578889999999985
No 42
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.5e-42 Score=294.87 Aligned_cols=298 Identities=15% Similarity=0.216 Sum_probs=250.0
Q ss_pred eecccCCCcc-EEEEE-eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee-
Q 040533 48 SNMMDWGRNN-ILAIA-LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN- 124 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~- 124 (364)
+.+++|+|++ +++++ .++.+..|...... ......+|...|++++|+|++++|++++ ||.|++||+.+++....
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~ 88 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHA--RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV 88 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSSSTTCCSEE--EEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS
T ss_pred eeEEEECCCCCEEEeecCCCcEeccccCCcc--ccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeee
Confidence 6678888865 44433 45555555443332 2333348999999999999999999998 99999999987754332
Q ss_pred --ee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc-eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040533 125 --LE--GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN-VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199 (364)
Q Consensus 125 --~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 199 (364)
+. .|...|.+++|+| ++++|++++.||.|++||+++++. ....+..|...|.+++|+|+++++++++.|+.|++
T Consensus 89 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~ 167 (337)
T 1gxr_A 89 SQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167 (337)
T ss_dssp EEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 33 6899999999999 999999999999999999987653 34567789999999999999999999999999999
Q ss_pred EeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceee
Q 040533 200 WDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS 279 (364)
Q Consensus 200 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 279 (364)
||+++. +.+..+..|...+.+++|+|++. .+++++ .|+.|++||+++++.+..+.....+.+++|+|+++++++
T Consensus 168 ~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 168 WDLHNQ---TLVRQFQGHTDGASCIDISNDGT-KLWTGG--LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EETTTT---EEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred EeCCCC---ceeeeeecccCceEEEEECCCCC-EEEEEe--cCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEE
Confidence 998764 45778888999999999999985 555554 799999999999999999988899999999999999998
Q ss_pred eccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeee
Q 040533 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLK 359 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~ 359 (364)
+.. ++.|++||+.+++.. .+..|...|.+++|+|++++|++++.||.|++||+.+++... ...|...|.+++
T Consensus 242 ~~~------~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-~~~~~~~v~~~~ 313 (337)
T 1gxr_A 242 GME------SSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCD 313 (337)
T ss_dssp EET------TSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-EEECSSCEEEEE
T ss_pred EcC------CCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE-EecCCCcEEEEE
Confidence 854 999999999987754 567899999999999999999999999999999999887663 346889999999
Q ss_pred eccC
Q 040533 360 VSPI 363 (364)
Q Consensus 360 ~sp~ 363 (364)
|+|.
T Consensus 314 ~s~~ 317 (337)
T 1gxr_A 314 ISVD 317 (337)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 9985
No 43
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.3e-42 Score=292.86 Aligned_cols=270 Identities=20% Similarity=0.282 Sum_probs=220.7
Q ss_pred eeeecCCCCCceEEEE-----cC-CCCEEEEEecCCcEEEEecCCc-------ceeeeeecCCCcEEEEEeecCCCCEEE
Q 040533 80 LLKVTGEDDFPTSISW-----SQ-DAKTLAVGYMASKLQLWDAETS-------KLIRNLEGHDKRVATASWNHWNGHILT 146 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~-----s~-~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~ 146 (364)
...+.+|.+.|++++| ++ ++++|++|+.|++|++||+.+. .....+.+|...|.+++|+| ++.+++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~ 92 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAI 92 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-CCCEEE
Confidence 4456799999999999 77 8999999999999999998753 45567889999999999999 999999
Q ss_pred EeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEE
Q 040533 147 SGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAW 226 (364)
Q Consensus 147 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 226 (364)
+|+.|++|++||+++++. ...+.+|...|.+++|+|++++|++++.|+.|++||+... ..........|...|.+++|
T Consensus 93 s~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTT-YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEETTSEEEEEETTSSCE-EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEE
T ss_pred EEcCCCcEEEEECCCCcE-EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeee
Confidence 999999999999997764 6678899999999999999999999999999999998632 11111112368889999999
Q ss_pred ccCCC---------cEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 227 CPYQF---------NVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 227 ~~~~~---------~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
+|++. .++++++ .|+.|++||. +.+....+. +...|.+++|+|++++|+++.. |+.|++||
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~------dg~v~iwd 241 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVG--WDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK------DKKLLIWD 241 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEE--TTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET------TCEEEEEE
T ss_pred ccccccccccCCCCCEEEEEc--CCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC------CCeEEEEE
Confidence 99873 4677766 8999999994 456665655 4578999999999999999855 99999999
Q ss_pred CCCC-ceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCc--cee-----------ccCCceeeeeecc
Q 040533 297 YPHM-TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSG--DFV-----------SHLDGLLSLKVSP 362 (364)
Q Consensus 297 ~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~--~~~-----------~~~~~v~~~~~sp 362 (364)
+... .....+ .+...|.+++|+|++++++++ .|+.|++|++.+.+... .+. +|...|.+++|+|
T Consensus 242 ~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 319 (343)
T 2xzm_R 242 ILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA 319 (343)
T ss_dssp SSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS
T ss_pred CCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC
Confidence 9543 333333 345679999999999877654 57889999998776544 322 6788899999999
Q ss_pred C
Q 040533 363 I 363 (364)
Q Consensus 363 ~ 363 (364)
.
T Consensus 320 ~ 320 (343)
T 2xzm_R 320 L 320 (343)
T ss_dssp S
T ss_pred C
Confidence 5
No 44
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-42 Score=305.04 Aligned_cols=300 Identities=16% Similarity=0.264 Sum_probs=251.3
Q ss_pred eeecccCCCc---cEEEEEeCCeEEEEEC----CCCc------eeeeee--ec------CCCCCceEEEEcCCCCEEEEE
Q 040533 47 YSNMMDWGRN---NILAIALGLELYLWKQ----ENGE------VQKLLK--VT------GEDDFPTSISWSQDAKTLAVG 105 (364)
Q Consensus 47 ~~~~~~~~~~---~~~~~~~~~~i~iw~~----~~~~------~~~~~~--~~------~~~~~v~~~~~s~~~~~l~~~ 105 (364)
.+.+++|+|+ .+++++.|+.|++|++ .+++ ...... +. +|...|++++|+|++++|++|
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence 3778889885 3556667899999999 8776 222221 11 267799999999999999999
Q ss_pred ecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCc----------
Q 040533 106 YMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAE---------- 175 (364)
Q Consensus 106 ~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---------- 175 (364)
+.||.|++|| .+++.+..+..|...|.+++|+| ++++|++++.||.|++||+.++.. ...+..+...
T Consensus 127 ~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 203 (425)
T 1r5m_A 127 VENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTV-MQHFELKETGGSSINAENHS 203 (425)
T ss_dssp ETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEE-EEEECCC-------------
T ss_pred eCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcE-EEEeeccccCccceeecccc
Confidence 9999999999 67888888999999999999999 999999999999999999987764 5556666665
Q ss_pred -----EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEEC
Q 040533 176 -----VCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 176 -----v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 250 (364)
+.+++|+|++ .+++++.++.|++||++.. +.+..+..|...|.+++|+|++. ++++++ .|+.|++||+
T Consensus 204 ~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~d~~i~i~d~ 276 (425)
T 1r5m_A 204 GDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEK---TPTGKLIGHHGPISVLEFNDTNK-LLLSAS--DDGTLRIWHG 276 (425)
T ss_dssp --CCCBSCCEEEETT-EEEEECGGGCEEEEETTCS---SCSEEECCCSSCEEEEEEETTTT-EEEEEE--TTSCEEEECS
T ss_pred CCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCC---ceeeeeccCCCceEEEEECCCCC-EEEEEc--CCCEEEEEEC
Confidence 8899999975 6888999999999998865 44777788999999999999985 555655 7999999999
Q ss_pred CCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEe
Q 040533 251 QKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 251 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 329 (364)
++++.+..+. +...+.+++|+|++ .++++.. ++.|++||+.+++.+..+..|...|.+++|+|++++|++++
T Consensus 277 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 277 GNGNSQNCFYGHSQSIVSASWVGDD-KVISCSM------DGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp SSBSCSEEECCCSSCEEEEEEETTT-EEEEEET------TSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE
T ss_pred CCCccceEecCCCccEEEEEECCCC-EEEEEeC------CCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEE
Confidence 9988888876 45789999999999 7777644 99999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeeCCC--------------------CCcceeccCC--ceeeeeeccC
Q 040533 330 ADETLRFWEAFGPS--------------------GSGDFVSHLD--GLLSLKVSPI 363 (364)
Q Consensus 330 ~dg~i~vw~~~~~~--------------------~~~~~~~~~~--~v~~~~~sp~ 363 (364)
.||.|++||+.+.+ .+..+..|.. .|++++|+|.
T Consensus 350 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 405 (425)
T 1r5m_A 350 MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA 405 (425)
T ss_dssp TTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT
T ss_pred CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC
Confidence 99999999999877 6777788866 9999999985
No 45
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.1e-42 Score=297.59 Aligned_cols=278 Identities=14% Similarity=0.207 Sum_probs=228.4
Q ss_pred eeecccCCCcc---EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCccee
Q 040533 47 YSNMMDWGRNN---ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 47 ~~~~~~~~~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
.+.+++|++++ +++++.|+.|++||+.+++........+|...|.+++|+| ++++|++++.||.|++||+.+ ...
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~ 153 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVI 153 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEE
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-Cce
Confidence 47888999864 6677789999999999988777776668999999999999 789999999999999999985 455
Q ss_pred eeeecC---CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-EEEEEeCCCeEE
Q 040533 123 RNLEGH---DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-LLASGGDDNLVH 198 (364)
Q Consensus 123 ~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~ 198 (364)
..+..+ ...|.+++|+| ++++|++++.|+.|++||++ ++ ....+..|...|.+++|+|+++ ++++++.|+.|+
T Consensus 154 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 230 (383)
T 3ei3_B 154 QVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GH-EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVK 230 (383)
T ss_dssp EEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SC-EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred EEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CC-EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEE
Confidence 555444 47899999999 99999999999999999994 33 4677889999999999999998 999999999999
Q ss_pred EEeCCCCCCC-cceEEecccccceeEEEEcc-CCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--------------
Q 040533 199 VWDHSKMSSS-KCLHRFRDHRAAVKALAWCP-YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-------------- 262 (364)
Q Consensus 199 iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-------------- 262 (364)
+||++..... ..+..+ +|...|.+++|+| ++. ++++++ .|+.|++||+++++....+..+
T Consensus 231 iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (383)
T 3ei3_B 231 LWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST-KLLTTD--QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT 306 (383)
T ss_dssp EEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC-EEEEEE--SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred EEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC-EEEEEc--CCCcEEEEECCCCccccccccccccccccccceEEe
Confidence 9999874432 334444 6899999999999 874 556655 7999999999987765555421
Q ss_pred ----CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc--cccceeEEeecCCCCEEEEEeCCCcEEE
Q 040533 263 ----AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH--QTSRILELSQSPDGLTVVSAAADETLRF 336 (364)
Q Consensus 263 ----~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~v 336 (364)
..+..++++|++++ + ++.|+.|++||+.+++.+..+.+ |...+..++|+|++++|++|+ ||.|++
T Consensus 307 ~~p~~~~~~~~~s~dg~~--s------~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~i 377 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL--L------LNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILI 377 (383)
T ss_dssp ECSSSSEEEEECBCCTTT--C------TTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEE
T ss_pred ccCCCCceEEEecCCccc--c------cCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEE
Confidence 23334555566555 2 35699999999999999999986 456778889999999999997 999999
Q ss_pred EEeeC
Q 040533 337 WEAFG 341 (364)
Q Consensus 337 w~~~~ 341 (364)
||+++
T Consensus 378 w~~~~ 382 (383)
T 3ei3_B 378 WNRED 382 (383)
T ss_dssp EECC-
T ss_pred EecCC
Confidence 99875
No 46
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.2e-42 Score=296.22 Aligned_cols=286 Identities=12% Similarity=0.194 Sum_probs=239.9
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.++.|++||+.+++......+.+|...|.+++|+|++++|++++.||.|++||+++++....
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence 37788888863 4455589999999999987555666779999999999999999999999999999999988875444
Q ss_pred --eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc---eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040533 125 --LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN---VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199 (364)
Q Consensus 125 --~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 199 (364)
+..|...|.+++|+| ++++|++++.||.|++||++.... .......|...|.+++|+|++++|++++.|+.|++
T Consensus 90 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~ 168 (372)
T 1k8k_C 90 LVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168 (372)
T ss_dssp EECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEE
Confidence 356889999999999 999999999999999999987763 23334578899999999999999999999999999
Q ss_pred EeCCCC---------------CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-C
Q 040533 200 WDHSKM---------------SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-A 263 (364)
Q Consensus 200 wd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~ 263 (364)
||++.. ...+.+..+..|...|.+++|+|++. ++++++ .|+.|++||+++++.+..+..+ .
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~ 245 (372)
T 1k8k_C 169 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVS--HDSTVCLADADKKMAVATLASETL 245 (372)
T ss_dssp EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEE--TTTEEEEEEGGGTTEEEEEECSSC
T ss_pred EEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCceeEEEccCCC
Confidence 997521 12356777888999999999999985 556655 7999999999999999888765 5
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC--Cc--------------------------------ee------
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH--MT--------------------------------KW------ 303 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~--~~--------------------------------~~------ 303 (364)
++.+++|+|++.+++++. |+.|++|++.+ ++ ..
T Consensus 246 ~v~~~~~~~~~~~l~~~~-------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 1k8k_C 246 PLLAVTFITESSLVAAGH-------DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 318 (372)
T ss_dssp CEEEEEEEETTEEEEEET-------TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred CeEEEEEecCCCEEEEEe-------CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence 899999999999988873 99999999987 32 00
Q ss_pred eec-cccccceeEEeec-CCC---CEEEEEeCCCcEEEEEeeCCC
Q 040533 304 GEL-QHQTSRILELSQS-PDG---LTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 304 ~~~-~~~~~~i~~i~~~-~~~---~~l~~~~~dg~i~vw~~~~~~ 343 (364)
..+ .+|...|++++|+ ++| .+|++|+.||.|++|++.+++
T Consensus 319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 223 4899999999966 676 999999999999999997754
No 47
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.8e-41 Score=286.46 Aligned_cols=278 Identities=20% Similarity=0.256 Sum_probs=237.4
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCceee---eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc--
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGEVQK---LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-- 120 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-- 120 (364)
.+.+++|+|++ +++++.|+.|++||+.+++... .....+|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 53 ~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 132 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132 (337)
T ss_dssp CCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E
T ss_pred ceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc
Confidence 47888898864 6666669999999998775322 22223789999999999999999999999999999999887
Q ss_pred eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 121 LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
....+..|...|.+++|+| ++++|++++.||.|++||+++++ ....+..|...+.+++|+|++++|++++.|+.|++|
T Consensus 133 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 210 (337)
T 1gxr_A 133 IKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp EEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCc-eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 5667788999999999999 99999999999999999998765 466777899999999999999999999999999999
Q ss_pred eCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeee
Q 040533 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 280 (364)
|++... .+..+ .+...+.+++|+|++. ++++++ .++.|++||+++++......+...+.+++|+|++++++++
T Consensus 211 d~~~~~---~~~~~-~~~~~v~~~~~s~~~~-~l~~~~--~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 283 (337)
T 1gxr_A 211 DLREGR---QLQQH-DFTSQIFSLGYCPTGE-WLAVGM--ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVST 283 (337)
T ss_dssp ETTTTE---EEEEE-ECSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECCCCc---eEeee-cCCCceEEEEECCCCC-EEEEEc--CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEe
Confidence 987653 34444 4678899999999985 455554 7999999999998876655667889999999999999988
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
.. ++.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++.
T Consensus 284 ~~------dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 284 GK------DNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp ET------TSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred cC------CCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 54 999999999999887554 477899999999999999999999999999974
No 48
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.2e-42 Score=295.37 Aligned_cols=283 Identities=16% Similarity=0.275 Sum_probs=232.5
Q ss_pred eeecccCCCcc--EEEEE-e---CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC---CCEEEEEecCCcEEEEecC
Q 040533 47 YSNMMDWGRNN--ILAIA-L---GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD---AKTLAVGYMASKLQLWDAE 117 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~-~---~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iw~~~ 117 (364)
.+.+++|+|++ +++++ . |+.|++||+.+++....... +|...|.+++|+|+ +++|++|+.||.|++||+.
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE 98 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence 47889999954 55554 2 89999999999887555444 78999999999998 6999999999999999999
Q ss_pred Ccc-eeeeeecCCCcEEEEEe------ecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccC----cEEEEE----Ec
Q 040533 118 TSK-LIRNLEGHDKRVATASW------NHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTA----EVCGLK----WS 182 (364)
Q Consensus 118 ~~~-~~~~~~~~~~~v~~~~~------~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~----~v~~~~----~~ 182 (364)
+++ .+..+.+|...|.+++| +| ++++|++++.||.|++||++++......+..|.. .+.+++ |+
T Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (357)
T 3i2n_A 99 APEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN 177 (357)
T ss_dssp SCSSCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC
T ss_pred CCCccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC
Confidence 988 88889999999999965 67 8999999999999999999987745666655554 889998 78
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEcc---CCCcEEEeecCCCCCeEEEEECCCCeEEEEE
Q 040533 183 NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP---YQFNVLASGGGTQDGCIKIWNVQKGTCIHSV 259 (364)
Q Consensus 183 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 259 (364)
|+++++++++.|+.|++||++... ......|...|.+++|+| ++. .+++++ .||.|++||+++++....+
T Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~ 250 (357)
T 3i2n_A 178 QEERVVCAGYDNGDIKLFDLRNMA----LRWETNIKNGVCSLEFDRKDISMN-KLVATS--LEGKFHVFDMRTQHPTKGF 250 (357)
T ss_dssp -CCCEEEEEETTSEEEEEETTTTE----EEEEEECSSCEEEEEESCSSSSCC-EEEEEE--STTEEEEEEEEEEETTTEE
T ss_pred CCCCEEEEEccCCeEEEEECccCc----eeeecCCCCceEEEEcCCCCCCCC-EEEEEC--CCCeEEEEeCcCCCcccce
Confidence 899999999999999999988753 233456788999999999 774 555555 7999999999876654333
Q ss_pred ------ecCCCeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCCC-------------------ceeeeccccccce
Q 040533 260 ------DTKAQICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPHM-------------------TKWGELQHQTSRI 313 (364)
Q Consensus 260 ------~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~-------------------~~~~~~~~~~~~i 313 (364)
.+...+.+++|+|+++ +++++.. |+.|++||+.++ +.+..+..|...|
T Consensus 251 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v 324 (357)
T 3i2n_A 251 ASVSEKAHKSTVWQVRHLPQNRELFLTAGG------AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI 324 (357)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEET------TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE
T ss_pred eeeccCCCcCCEEEEEECCCCCcEEEEEeC------CCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe
Confidence 3557899999999999 6777744 999999998754 3566778899999
Q ss_pred eEEeecCCCCEEE-EEeCCCcEEEEEeeCCCC
Q 040533 314 LELSQSPDGLTVV-SAAADETLRFWEAFGPSG 344 (364)
Q Consensus 314 ~~i~~~~~~~~l~-~~~~dg~i~vw~~~~~~~ 344 (364)
++++|+|++++|+ +++.||.|++||+.+.+.
T Consensus 325 ~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 325 SSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred eEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 9999999999998 899999999999987653
No 49
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.2e-41 Score=282.98 Aligned_cols=251 Identities=19% Similarity=0.312 Sum_probs=210.5
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC--cceeeeeecCCCcEEEEEeecC-CCCEEEEeeCCCcEEEEE
Q 040533 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET--SKLIRNLEGHDKRVATASWNHW-NGHILTSGSQDKSIINHD 158 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d 158 (364)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.. .+.+..+.+|..+|.+++|+|. ++++|++|+.|++|++||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 4568999999999999999999999999999999974 4677889999999999999862 489999999999999999
Q ss_pred cccCc-ceeeeeecccCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC-----
Q 040533 159 VRVSN-NVTSRINAHTAEVCGLKWSNE--GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ----- 230 (364)
Q Consensus 159 ~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----- 230 (364)
++++. .....+..|...|.+++|+|+ +.+|++++.|+.|++||++..... ....+.+|...|.+++|+|++
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT-SPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB-CCEEEECCSSCEEEEEECCCC-----
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce-eeeeeecccCccceEeecCCcccccc
Confidence 98764 234556789999999999997 889999999999999998865321 245667899999999999973
Q ss_pred -------CcEEEeecCCCCCeEEEEECCCCe----EEEEEec-CCCeEEEEEcCCc---cceeeeccCCccCCCCeEEEe
Q 040533 231 -------FNVLASGGGTQDGCIKIWNVQKGT----CIHSVDT-KAQICGLEWNRHH---KEILSGHGFSSSGDGQKLCLW 295 (364)
Q Consensus 231 -------~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~~-~~~v~~~~~~~~~---~~l~~~~~~~~~~~~~~i~i~ 295 (364)
..++++++ .|++|++||+++++ ....+.. ...|.+++|+|++ .+++++.. |+.|++|
T Consensus 163 ~~~~~~~~~~l~sgs--~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~------D~~v~iW 234 (297)
T 2pm7_B 163 EHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ------DRTCIIW 234 (297)
T ss_dssp -------CCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET------TSCEEEE
T ss_pred cCCCCCCcceEEEEc--CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC------CCcEEEE
Confidence 25788876 89999999998765 4555654 4679999999985 77887744 9999999
Q ss_pred eCCCCc---eeeec--cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 296 KYPHMT---KWGEL--QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 296 d~~~~~---~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
|+.+.. ....+ ..|...|.+++|+|+|++|++++.||.|++|+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 997643 11223 46788999999999999999999999999999864
No 50
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.8e-42 Score=297.13 Aligned_cols=282 Identities=17% Similarity=0.263 Sum_probs=234.5
Q ss_pred eeecccCCCc------cEEEEEeCCeEEEEECCCCceeeeee---ecCCCCCceEEEEcCC----CCEEEEEecCCcEEE
Q 040533 47 YSNMMDWGRN------NILAIALGLELYLWKQENGEVQKLLK---VTGEDDFPTSISWSQD----AKTLAVGYMASKLQL 113 (364)
Q Consensus 47 ~~~~~~~~~~------~~~~~~~~~~i~iw~~~~~~~~~~~~---~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~i 113 (364)
.+.+++|+|. .+++++.++.|++||..+++...... ...|...|++++|+|+ +++|++|+.||.|++
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v 99 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRI 99 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEE
Confidence 3778888862 27888889999999999776544333 1237788999999998 679999999999999
Q ss_pred EecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee---ecccCcEEEEEEcCCCCEEEE
Q 040533 114 WDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI---NAHTAEVCGLKWSNEGNLLAS 190 (364)
Q Consensus 114 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~ 190 (364)
||+.+++.+..+.+|...|.+++|+|.++++|++++.||.|++||+++++. ...+ ..|...|.+++|+|++++|++
T Consensus 100 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 178 (366)
T 3k26_A 100 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-VAIFGGVEGHRDEVLSADYDLLGEKIMS 178 (366)
T ss_dssp ECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-EEEECSTTSCSSCEEEEEECTTSSEEEE
T ss_pred EEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-EEEecccccccCceeEEEECCCCCEEEE
Confidence 999999999999999999999999997789999999999999999987764 4444 679999999999999999999
Q ss_pred EeCCCeEEEEeCCCCCCCc-------------------------ceEEecccccceeEEEEccCCCcEEEeecCCCCCeE
Q 040533 191 GGDDNLVHVWDHSKMSSSK-------------------------CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCI 245 (364)
Q Consensus 191 ~~~d~~i~iwd~~~~~~~~-------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 245 (364)
++.||.|++||++...... .......|...|.+++|+ + .++++++ .|+.|
T Consensus 179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~--~d~~i 253 (366)
T 3k26_A 179 CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKS--CENAI 253 (366)
T ss_dssp EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEEC--SSSEE
T ss_pred ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEe--cCCEE
Confidence 9999999999987642210 112233488999999998 3 4677765 89999
Q ss_pred EEEECCCCeE--------------EEEEec-CCCeEEEEEcCC--ccceeeeccCCccCCCCeEEEeeCCCCceee----
Q 040533 246 KIWNVQKGTC--------------IHSVDT-KAQICGLEWNRH--HKEILSGHGFSSSGDGQKLCLWKYPHMTKWG---- 304 (364)
Q Consensus 246 ~i~d~~~~~~--------------~~~~~~-~~~v~~~~~~~~--~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~---- 304 (364)
++||+.++.. +..+.. ...+.+++|+|+ +++++++.. |+.|++||+.+++...
T Consensus 254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~ 327 (366)
T 3k26_A 254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ------VGKLYVWDLEVEDPHKAKCT 327 (366)
T ss_dssp EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT------TSCEEEEECCSSSGGGCEEE
T ss_pred EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec------CCcEEEEECCCCCCccccce
Confidence 9999987643 555543 467999999999 999998854 9999999999886543
Q ss_pred ecccc--ccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 305 ELQHQ--TSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 305 ~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
.+..| ...|++++|+|++++|++++.||.|++||+.
T Consensus 328 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 328 TLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 67777 7899999999999999999999999999985
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.3e-41 Score=299.51 Aligned_cols=295 Identities=18% Similarity=0.273 Sum_probs=253.2
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
+.++.++++.+++++.|+.|++||+.+++.. ..+.+|.+.|.+++|+|++ +|++|+.||+|++||+++++.+..+.+
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~--~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~ 201 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFL--LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG 201 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEE--EEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence 4567777777888999999999999998864 4455999999999999988 999999999999999999999999999
Q ss_pred CCCcEEEEEeec-CCCCEEEEeeCCCcEEEEEcccCcce----------------------eeeeecccCcEEEEEEcCC
Q 040533 128 HDKRVATASWNH-WNGHILTSGSQDKSIINHDVRVSNNV----------------------TSRINAHTAEVCGLKWSNE 184 (364)
Q Consensus 128 ~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~----------------------~~~~~~~~~~v~~~~~~~~ 184 (364)
|...|.+++|++ .++.++++|+.||.|++||+++.... ...+.+|...+.++ +++
T Consensus 202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~ 279 (464)
T 3v7d_B 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH 279 (464)
T ss_dssp CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE
T ss_pred CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC
Confidence 999999999985 26789999999999999999876532 44567788888887 567
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-C
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-A 263 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~ 263 (364)
++++++++.|+.|++||+++. +.+..+.+|...|.+++|+|++. .+++++ .|+.|++||+++++++..+..+ .
T Consensus 280 ~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~~ 353 (464)
T 3v7d_B 280 GNIVVSGSYDNTLIVWDVAQM---KCLYILSGHTDRIYSTIYDHERK-RCISAS--MDTTIRIWDLENGELMYTLQGHTA 353 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEETTTT-EEEEEE--TTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCEEEEEeCCCeEEEEECCCC---cEEEEecCCCCCEEEEEEcCCCC-EEEEEe--CCCcEEEEECCCCcEEEEEeCCCC
Confidence 889999999999999998764 55888889999999999999985 555655 8999999999999999998654 7
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
.+.++.|+ +.+++++.. |+.|++||+.++....... +...+..++|+|++++|++|+ ||.|++||+.+++
T Consensus 354 ~v~~~~~~--~~~l~s~s~------dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 354 LVGLLRLS--DKFLVSAAA------DGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp CEEEEEEC--SSEEEEEET------TSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred cEEEEEEc--CCEEEEEeC------CCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 79999997 467777754 9999999999987766653 566788899999999999998 8999999999998
Q ss_pred CCcc-eeccCCceeeeeeccC
Q 040533 344 GSGD-FVSHLDGLLSLKVSPI 363 (364)
Q Consensus 344 ~~~~-~~~~~~~v~~~~~sp~ 363 (364)
.+.. +..|.+.|.+++|++.
T Consensus 424 ~~~~~~~~~~~~v~~v~~~~~ 444 (464)
T 3v7d_B 424 LVHANILKDADQIWSVNFKGK 444 (464)
T ss_dssp EEESCTTTTCSEEEEEEEETT
T ss_pred EEehhhccCCCcEEEEEecCC
Confidence 8775 5678999999999864
No 52
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1e-40 Score=291.63 Aligned_cols=270 Identities=13% Similarity=0.159 Sum_probs=236.3
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc------eeeeeecCCCcEEEEEeecCC----C---CEEEE
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK------LIRNLEGHDKRVATASWNHWN----G---HILTS 147 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~~----~---~~l~~ 147 (364)
..+.+|.+.|++++|+| ++|++|+.||.|++||+.+++ .+..+..|...|.+++|+| + + ++|++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVAT 86 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEec-ccccCCccccEEEE
Confidence 44568999999999998 799999999999999999887 7888889999999999999 7 8 99999
Q ss_pred eeCCCcEEEEEcccCcc----eeeeeecc-----cCcEEEEEEc----CCCCE-EEEEeCCCeEEEEeCCC------CCC
Q 040533 148 GSQDKSIINHDVRVSNN----VTSRINAH-----TAEVCGLKWS----NEGNL-LASGGDDNLVHVWDHSK------MSS 207 (364)
Q Consensus 148 ~~~dg~i~~~d~~~~~~----~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d~~i~iwd~~~------~~~ 207 (364)
++.||.|++||+.++.. ....+..| ...|.+++|+ |++++ |++++.||.|++||++. ...
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 99999999999987763 14556677 5899999999 99999 99999999999999876 332
Q ss_pred Cc--ceEEe-------cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-------CCCeEEEEEc
Q 040533 208 SK--CLHRF-------RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-------KAQICGLEWN 271 (364)
Q Consensus 208 ~~--~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-------~~~v~~~~~~ 271 (364)
.. +...+ ..|...|.+++|+|++ ++++++ .|+.|++||+++++.+..+.. ...+.+++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEe--CCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 11 01145 3478899999999998 666665 899999999999999998886 7889999999
Q ss_pred CCccceeeeccCCccCCC---CeEEEeeCCCCceeeeccc-------------cccceeEEeecCCCCEEEEEeCCCcEE
Q 040533 272 RHHKEILSGHGFSSSGDG---QKLCLWKYPHMTKWGELQH-------------QTSRILELSQSPDGLTVVSAAADETLR 335 (364)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~-------------~~~~i~~i~~~~~~~~l~~~~~dg~i~ 335 (364)
|++.+++++.. + +.|++||+.+++.+..+.. |...|.+++|+|++++|++++.||.|+
T Consensus 243 ~~~~~l~~~~~------d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 316 (397)
T 1sq9_A 243 PQGSLLAIAHD------SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 316 (397)
T ss_dssp SSTTEEEEEEE------ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCCCEEEEEec------CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 99999998864 7 9999999999999999998 999999999999999999999999999
Q ss_pred EEEeeCCCCCccee------cc---------------CCceeeeeeccC
Q 040533 336 FWEAFGPSGSGDFV------SH---------------LDGLLSLKVSPI 363 (364)
Q Consensus 336 vw~~~~~~~~~~~~------~~---------------~~~v~~~~~sp~ 363 (364)
+||+.+++.+..+. +| ..+|++++|+|.
T Consensus 317 iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~ 365 (397)
T 1sq9_A 317 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK 365 (397)
T ss_dssp EEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred EEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence 99999998888888 77 999999999996
No 53
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.2e-40 Score=305.60 Aligned_cols=299 Identities=15% Similarity=0.268 Sum_probs=260.0
Q ss_pred CcceeecccCCCcc-EEEEEeCCeEEEEECCCC----ceeeeeeecCCCCC-ceEEEEcC--CCCEEEEEecCCcEEEEe
Q 040533 44 NDYYSNMMDWGRNN-ILAIALGLELYLWKQENG----EVQKLLKVTGEDDF-PTSISWSQ--DAKTLAVGYMASKLQLWD 115 (364)
Q Consensus 44 ~~~~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~----~~~~~~~~~~~~~~-v~~~~~s~--~~~~l~~~~~dg~i~iw~ 115 (364)
....+.+++|+|++ +++++.++.|.+||+.++ +. ...+.+|... |++++|+| ++++|++|+.||.|++||
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~--~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPP--VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCS--EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred ccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCcccc--ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 34458889999964 777777999999999987 44 4455699999 99999999 999999999999999999
Q ss_pred cCCc--------ceeeeeecCCCcEEEEEeecCCCCEEEEeeCC----CcEEEEEcccCcceeeeeecccCcEEEEEEcC
Q 040533 116 AETS--------KLIRNLEGHDKRVATASWNHWNGHILTSGSQD----KSIINHDVRVSNNVTSRINAHTAEVCGLKWSN 183 (364)
Q Consensus 116 ~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 183 (364)
+.++ +....+..|...|.+++|+| ++++|++++.+ +.|.+|| .++ ....+.+|...|.+++|+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~-~~~~~~~~~~~v~~~~~~~ 170 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGN-SLGEVSGHSQRINACHLKQ 170 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCC-EEEECCSCSSCEEEEEECS
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCC-cceeeecCCccEEEEEECC
Confidence 9754 66778888999999999999 99999999987 6888888 333 4677789999999999999
Q ss_pred CCC-EEEEEeCCCeEEEEeCCCCCCCcceEEeccccc---ceeEEEEccC-CCcEEEeecCCCCCeEEEEECCCCeEEEE
Q 040533 184 EGN-LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA---AVKALAWCPY-QFNVLASGGGTQDGCIKIWNVQKGTCIHS 258 (364)
Q Consensus 184 ~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~~~~~g~~d~~i~i~d~~~~~~~~~ 258 (364)
+++ ++++++.|+.|++||++.. +.+..+.+|.. .|.+++|+|+ + .++++++ .|+.|++||+++++.+..
T Consensus 171 ~~~~~l~~~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~--~dg~i~vwd~~~~~~~~~ 244 (615)
T 1pgu_A 171 SRPMRSMTVGDDGSVVFYQGPPF---KFSASDRTHHKQGSFVRDVEFSPDSG-EFVITVG--SDRKISCFDGKSGEFLKY 244 (615)
T ss_dssp SSSCEEEEEETTTEEEEEETTTB---EEEEEECSSSCTTCCEEEEEECSTTC-CEEEEEE--TTCCEEEEETTTCCEEEE
T ss_pred CCCcEEEEEeCCCcEEEEeCCCc---ceeeeecccCCCCceEEEEEECCCCC-CEEEEEe--CCCeEEEEECCCCCEeEE
Confidence 997 8999999999999997654 55788888988 9999999999 6 5666655 799999999999999999
Q ss_pred E-----ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc----ccceeEEeecCCCCEEEEEe
Q 040533 259 V-----DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ----TSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 259 ~-----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~ 329 (364)
+ .+...+.+++|+ ++.+++++.. |+.|++||+.+++.+..+..+ ...+.++.|+ ++.++++++
T Consensus 245 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 316 (615)
T 1pgu_A 245 IEDDQEPVQGGIFALSWL-DSQKFATVGA------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLS 316 (615)
T ss_dssp CCBTTBCCCSCEEEEEES-SSSEEEEEET------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEE
T ss_pred ecccccccCCceEEEEEc-CCCEEEEEcC------CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEE
Confidence 8 566889999999 9999998854 999999999999998888766 4678888886 889999999
Q ss_pred CCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 330 ADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 330 ~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.||.|++||+.+++....+.+|.+.|.+++| |.
T Consensus 317 ~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 317 LDGTLNFYELGHDEVLKTISGHNKGITALTV-NP 349 (615)
T ss_dssp TTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred CCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence 9999999999988888888899999999998 73
No 54
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-39 Score=281.99 Aligned_cols=277 Identities=17% Similarity=0.265 Sum_probs=243.3
Q ss_pred CCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCc
Q 040533 74 NGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKS 153 (364)
Q Consensus 74 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 153 (364)
.|...+...+.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.
T Consensus 19 ~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 19 QGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYS 97 (369)
T ss_dssp SCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTE
T ss_pred eccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCe
Confidence 345566677889999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCCCC--------cceEEeccccc-
Q 040533 154 IINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD-----NLVHVWDHSKMSSS--------KCLHRFRDHRA- 219 (364)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~--------~~~~~~~~~~~- 219 (364)
|++||+.+++. ...+. +...+.+++|+|+++++++++.+ +.|++||++..... .....+..|..
T Consensus 98 i~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 98 IKLWDVSNGQC-VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp EEEEETTTCCE-EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred EEEEECCCCcE-EEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 99999987764 44444 88899999999999999999999 99999998765432 12344445555
Q ss_pred -ceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-CeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 220 -AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-GTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 220 -~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
.+.+++|+|++. ++++++ .||.|++||+++ ++.+..+.. ...+.+++|+|++.+++++.. |+.|++||
T Consensus 176 ~~~~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d 246 (369)
T 3zwl_B 176 DAATVAGWSTKGK-YIIAGH--KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR------DTNSFLVD 246 (369)
T ss_dssp CCEEEEEECGGGC-EEEEEE--TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET------TSEEEEEE
T ss_pred cceeEEEEcCCCC-EEEEEc--CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC------CceEEEEE
Confidence 899999999985 555554 799999999998 777777764 578999999999999998854 99999999
Q ss_pred CCCCceeeeccccccceeEEeecCCCCEEEEEeCCC--------------cEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 297 YPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE--------------TLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg--------------~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
+.+++.+..+. +...+..++|+|+++++++++.++ .+++||+.+++....+.+|.+.|++++|+|
T Consensus 247 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 325 (369)
T 3zwl_B 247 VSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISP 325 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred CCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECC
Confidence 99999988887 677899999999999999999988 899999999999999999999999999998
Q ss_pred C
Q 040533 363 I 363 (364)
Q Consensus 363 ~ 363 (364)
.
T Consensus 326 ~ 326 (369)
T 3zwl_B 326 Q 326 (369)
T ss_dssp T
T ss_pred C
Confidence 5
No 55
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-40 Score=290.73 Aligned_cols=275 Identities=15% Similarity=0.277 Sum_probs=239.8
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.|+.|++|| .+++. ...+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGAL--LNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCE--EEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCe--eeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence 57888998863 66777899999999 44443 344558999999999999999999999999999999999999988
Q ss_pred eecCCCc---------------EEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEE
Q 040533 125 LEGHDKR---------------VATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLA 189 (364)
Q Consensus 125 ~~~~~~~---------------v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (364)
+..+... +.+++|+| + ..+++++.+|.|++||++++.. ...+..|...|.+++|+|++++|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTP-TGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp ECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSC-SEEECCCSSCEEEEEEETTTTEEE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCce-eeeeccCCCceEEEEECCCCCEEE
Confidence 8877776 99999998 5 5688999999999999997764 666778999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEE
Q 040533 190 SGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGL 268 (364)
Q Consensus 190 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~ 268 (364)
+++.|+.|++||++.. +.+..+..|...|.+++|+|++ ++++++ .|+.|++||+++++.+..+.. ...+.++
T Consensus 264 ~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~--~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~~ 336 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNG---NSQNCFYGHSQSIVSASWVGDD--KVISCS--MDGSVRLWSLKQNTLLALSIVDGVPIFAG 336 (425)
T ss_dssp EEETTSCEEEECSSSB---SCSEEECCCSSCEEEEEEETTT--EEEEEE--TTSEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred EEcCCCEEEEEECCCC---ccceEecCCCccEEEEEECCCC--EEEEEe--CCCcEEEEECCCCcEeEecccCCccEEEE
Confidence 9999999999998764 4477778899999999999988 666655 799999999999999988875 5789999
Q ss_pred EEcCCccceeeeccCCccCCCCeEEEeeCCCCc--------------------eeeecccccc--ceeEEeecCCCCEEE
Q 040533 269 EWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT--------------------KWGELQHQTS--RILELSQSPDGLTVV 326 (364)
Q Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~--------------------~~~~~~~~~~--~i~~i~~~~~~~~l~ 326 (364)
+|+|++++++++.. ++.|++||+.+++ .+..+..|.. .|++++|+|++++|+
T Consensus 337 ~~s~~~~~l~~~~~------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 410 (425)
T 1r5m_A 337 RISQDGQKYAVAFM------DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKIS 410 (425)
T ss_dssp EECTTSSEEEEEET------TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEE
T ss_pred EEcCCCCEEEEEEC------CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEE
Confidence 99999999998854 9999999999888 8888998876 999999999999999
Q ss_pred EEeCCCcEEEEEee
Q 040533 327 SAAADETLRFWEAF 340 (364)
Q Consensus 327 ~~~~dg~i~vw~~~ 340 (364)
+++.||.|++|+++
T Consensus 411 ~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 411 VAYSLQEGSVVAIP 424 (425)
T ss_dssp EEESSSCCEEEECC
T ss_pred EEecCceEEEEeec
Confidence 99999999999985
No 56
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-42 Score=298.46 Aligned_cols=281 Identities=14% Similarity=0.196 Sum_probs=217.0
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc---e
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK---L 121 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---~ 121 (364)
.+.+++|+|++ +++++.|+.|++||+.++.......+.+|...|.+++|+|++++|++|+.||.|++||+.+++ .
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence 37889999864 445558999999999988544566677999999999999999999999999999999999887 5
Q ss_pred eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc--eeeeeec-ccCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040533 122 IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN--VTSRINA-HTAEVCGLKWSNEGNLLASGGDDNLVH 198 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~ 198 (364)
...+..|...|.+++|+| ++++|++++.|+.|++||++++.. ....+.. |...|.+++|+|++++|++++.|+.|+
T Consensus 93 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~ 171 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAY 171 (377)
T ss_dssp EEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEE
T ss_pred eeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEE
Confidence 667778999999999999 999999999999999999987753 3455666 999999999999999999999999999
Q ss_pred EEeCCCCC---------------CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE----EEEE
Q 040533 199 VWDHSKMS---------------SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC----IHSV 259 (364)
Q Consensus 199 iwd~~~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~----~~~~ 259 (364)
+||++... ..+.+..+ +|...|.+++|+|+++ ++++++ .|+.|++||+.+++. +..+
T Consensus 172 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~ 247 (377)
T 3dwl_C 172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAG--HDSSVTIAYPSAPEQPPRALITV 247 (377)
T ss_dssp EEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEE--TTTEEC-CEECSTTSCEEECCCE
T ss_pred EEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEe--CCCcEEEEECCCCCCcceeeEee
Confidence 99986322 12344555 8899999999999996 555554 799999999999876 5555
Q ss_pred ec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc--ee---------------------------------
Q 040533 260 DT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT--KW--------------------------------- 303 (364)
Q Consensus 260 ~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~--~~--------------------------------- 303 (364)
.. ...+.+++|+|++++++++. ++.+.+|+..... ..
T Consensus 248 ~~~~~~v~~~~~s~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (377)
T 3dwl_C 248 KLSQLPLRSLLWANESAIVAAGY-------NYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTAL 320 (377)
T ss_dssp ECSSSCEEEEEEEETTEEEEEES-------SSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------
T ss_pred cCCCCceEEEEEcCCCCEEEEEc-------CCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccc
Confidence 54 46799999999999998874 4444567654211 00
Q ss_pred -ee----------------ccccccceeEEeecCCC-C---EEEEEeCCCcEEEEEe
Q 040533 304 -GE----------------LQHQTSRILELSQSPDG-L---TVVSAAADETLRFWEA 339 (364)
Q Consensus 304 -~~----------------~~~~~~~i~~i~~~~~~-~---~l~~~~~dg~i~vw~~ 339 (364)
.. ...|.+.|+++++.+.. . .|+||+.||.|++||+
T Consensus 321 ~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 321 RSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ----------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00 11288999999976644 3 6999999999999985
No 57
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-39 Score=273.66 Aligned_cols=277 Identities=16% Similarity=0.252 Sum_probs=234.1
Q ss_pred eecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc---ceee
Q 040533 48 SNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS---KLIR 123 (364)
Q Consensus 48 ~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~ 123 (364)
+.+++|..+ .+++++.||.|++||+.+++..... ..|...|.+++|+|++++|++|+.||.|++|++... +...
T Consensus 21 v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~ 98 (313)
T 3odt_A 21 VRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVV--YTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY 98 (313)
T ss_dssp EEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEE--EECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C
T ss_pred cEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEe--ecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc
Confidence 666777333 4677788999999999887764443 478999999999999999999999999999998754 5567
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~ 202 (364)
.+..|...|.+++| +++++++++.||.|++|| .......+..|...+.+++|+| +++++++++.|+.|++||.
T Consensus 99 ~~~~~~~~i~~~~~---~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~ 172 (313)
T 3odt_A 99 TLIGHQGNVCSLSF---QDGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN 172 (313)
T ss_dssp EECCCSSCEEEEEE---ETTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred chhhcccCEEEEEe---cCCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec
Confidence 78889999999999 567999999999999999 3334667778999999999998 8999999999999999993
Q ss_pred CCCCCCcceEEecc-cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeee
Q 040533 203 SKMSSSKCLHRFRD-HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 203 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 280 (364)
. +....+.. |...+.+++|+|++. +++++ .|+.|++||+++++.+..+. +...+.+++|+|++ .++++
T Consensus 173 ~-----~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~ 242 (313)
T 3odt_A 173 D-----KVIKTFSGIHNDVVRHLAVVDDGH--FISCS--NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSC 242 (313)
T ss_dssp T-----EEEEEECSSCSSCEEEEEEEETTE--EEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEE
T ss_pred C-----ceEEEEeccCcccEEEEEEcCCCe--EEEcc--CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEE
Confidence 3 33566666 889999999999985 55555 79999999999999998887 45789999999999 46666
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
.. |+.|++||+.+++.+..+..|...|.+++|+|+++ +++++.||.|++||+.+++......
T Consensus 243 ~~------dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 243 GE------DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp ET------TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred ec------CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 43 99999999999999999999999999999999998 6679999999999999877655443
No 58
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.8e-41 Score=285.75 Aligned_cols=252 Identities=19% Similarity=0.328 Sum_probs=205.8
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc--eeeeeecCCCcEEEEEeecC-CCCEEEEeeCCCcEEEEEc
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVATASWNHW-NGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~ 159 (364)
+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ .+..+.+|...|.+++|+|. ++++|++|+.|++|++||+
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 45899999999999999999999999999999998774 46778899999999999762 4899999999999999999
Q ss_pred ccCc-ceeeeeecccCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC------
Q 040533 160 RVSN-NVTSRINAHTAEVCGLKWSNE--GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ------ 230 (364)
Q Consensus 160 ~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------ 230 (364)
+++. .....+.+|...|.+++|+|+ +.+|++++.|+.|++||++..........+.+|...|.+++|+|+.
T Consensus 89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 168 (316)
T 3bg1_A 89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI 168 (316)
T ss_dssp SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC----
T ss_pred CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccc
Confidence 8764 235567789999999999997 7899999999999999987653322344556788999999999973
Q ss_pred ----------CcEEEeecCCCCCeEEEEECCCC---eEEEEEec-CCCeEEEEEcCCc----cceeeeccCCccCCCCeE
Q 040533 231 ----------FNVLASGGGTQDGCIKIWNVQKG---TCIHSVDT-KAQICGLEWNRHH----KEILSGHGFSSSGDGQKL 292 (364)
Q Consensus 231 ----------~~~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~-~~~v~~~~~~~~~----~~l~~~~~~~~~~~~~~i 292 (364)
..++++++ .|+.|++||++.. +++..+.. ...|.+++|+|++ .+|+++.. |+.|
T Consensus 169 ~~~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~------D~~v 240 (316)
T 3bg1_A 169 DHPSGQKPNYIKRFASGG--CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ------DGRV 240 (316)
T ss_dssp --CCSCCCCCCCBEECCB--TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET------TCEE
T ss_pred ccccccCccccceEEEec--CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC------CCeE
Confidence 24677776 8999999999765 34555543 4679999999987 67877744 9999
Q ss_pred EEeeCCCCc----eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 293 CLWKYPHMT----KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 293 ~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
++|++.+.. ....+..|...|.+++|+|++++|++++.||.|++|+....
T Consensus 241 ~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 241 FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp EEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred EEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 999987631 22345678899999999999999999999999999998643
No 59
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.3e-40 Score=286.35 Aligned_cols=266 Identities=16% Similarity=0.222 Sum_probs=227.9
Q ss_pred eecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEecCCcceeeeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 82 KVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDAETSKLIRNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
.+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++....+. +|...|.+++|+|.++++|++++.|+.|++||
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 456899999999999999 999999999999999999888777665 69999999999996679999999999999999
Q ss_pred cccCcceeeeeec---ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 159 VRVSNNVTSRINA---HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 159 ~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
++... ...+.. |...|.+++|+|++++|++++.|+.|++||++ .+.+..+..|...|.+++|+|+++.+++
T Consensus 148 ~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 148 FSGSV--IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD----GHEIFKEKLHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp TTSCE--EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT----SCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred CCCCc--eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC----CCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence 98532 344433 44889999999999999999999999999984 3457888899999999999999976888
Q ss_pred eecCCCCCeEEEEECCC----CeEEEEEecCCCeEEEEEcC-CccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc
Q 040533 236 SGGGTQDGCIKIWNVQK----GTCIHSVDTKAQICGLEWNR-HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT 310 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 310 (364)
+++ .|+.|++||+++ +..+..+.+...+.+++|+| ++.+++++.. |+.|++||+.+++.+..+..|.
T Consensus 222 s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 222 TSS--VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ------RNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp EEE--TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEES------SSEEEEEETTBTTSCSEEEECC
T ss_pred EEe--CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcC------CCcEEEEECCCCcccccccccc
Confidence 876 899999999998 77888888889999999999 9999998854 9999999999988877766543
Q ss_pred -----------------cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec--cCCceeeeeeccC
Q 040533 311 -----------------SRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS--HLDGLLSLKVSPI 363 (364)
Q Consensus 311 -----------------~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~--~~~~v~~~~~sp~ 363 (364)
..+..++|+|++++ +++.||.|++||+.+++.+..+.+ |...+..++|+|.
T Consensus 294 ~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~ 363 (383)
T 3ei3_B 294 HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPT 363 (383)
T ss_dssp BCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTT
T ss_pred ccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecC
Confidence 23444667777766 778999999999999998888876 4677788899985
No 60
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9.3e-40 Score=282.93 Aligned_cols=246 Identities=13% Similarity=0.212 Sum_probs=215.4
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc--eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
.|...|++++|+|++++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+| ++++|++++.||.|++||++++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETT
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCC
Confidence 588999999999999999999999999999999887 8888999999999999999 9999999999999999999876
Q ss_pred cce-eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEe-cccccceeEEEEccCCCcEEEeecCC
Q 040533 163 NNV-TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 163 ~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
+.. ...+..|...|.+++|+|++++|++++.|+.|++||++..........+ ..|...|.+++|+|++. ++++++
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-- 161 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGS-- 161 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEE--
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEc--
Confidence 532 2334678999999999999999999999999999998875432223333 56789999999999884 566655
Q ss_pred CCCeEEEEEC------------------CCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 241 QDGCIKIWNV------------------QKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 241 ~d~~i~i~d~------------------~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
.|+.|++||+ ..++.+..+. +...+.+++|+|++++++++.. |+.|++||+.+++
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH------DSTVCLADADKKM 235 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET------TTEEEEEEGGGTT
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC------CCEEEEEECCCCc
Confidence 7999999995 3677777775 4577999999999999998854 9999999999999
Q ss_pred eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 302 KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 302 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
.+..+..|...|.+++|+|++++|++| .||.|++|++..
T Consensus 236 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 236 AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 999999999999999999999988887 899999999988
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.2e-39 Score=287.50 Aligned_cols=288 Identities=22% Similarity=0.379 Sum_probs=250.2
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
+.++.++++.+++++.|+.|++||+.+++.. ..+.+|...|.+++|+ ++++++|+.||.|++||+.+++.+..+.+
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 197 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL--RTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYG 197 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEE--EECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEE--EEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECC
Confidence 4567777777888999999999999998764 4455999999999997 57999999999999999999999999999
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS 207 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 207 (364)
|...|.+++| +++.+++|+.||.|++||+.+++. ...+.+|...|.+++| +++++++++.||.|++||+++.
T Consensus 198 h~~~v~~~~~---~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~-- 269 (445)
T 2ovr_B 198 HTSTVRCMHL---HEKRVVSGSRDATLRVWDIETGQC-LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE-- 269 (445)
T ss_dssp CSSCEEEEEE---ETTEEEEEETTSEEEEEESSSCCE-EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT--
T ss_pred CCCcEEEEEe---cCCEEEEEeCCCEEEEEECCCCcE-EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC--
Confidence 9999999999 457899999999999999987764 6677889999999999 6789999999999999997654
Q ss_pred CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCcc
Q 040533 208 SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 208 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
+.+..+.+|...|.++.| ++ ..+++++ .|+.|++||+++++.+..+..+ ..+.++.++ +.+++++..
T Consensus 270 -~~~~~~~~~~~~v~~~~~--~~-~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~---- 337 (445)
T 2ovr_B 270 -TCLHTLQGHTNRVYSLQF--DG-IHVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNA---- 337 (445)
T ss_dssp -EEEEEECCCSSCEEEEEE--CS-SEEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEET----
T ss_pred -cEeEEecCCCCceEEEEE--CC-CEEEEEe--CCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeC----
Confidence 557888899999999999 44 4566665 7999999999999999888654 557777764 567777754
Q ss_pred CCCCeEEEeeCCCCceeeeccc---cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcce-----eccCCceeee
Q 040533 287 GDGQKLCLWKYPHMTKWGELQH---QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF-----VSHLDGLLSL 358 (364)
Q Consensus 287 ~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-----~~~~~~v~~~ 358 (364)
|+.|++||+.+++.+..+.. |...|++++|+ +++|++|+.||.|++||+.+++.+..+ ..|.+.|+++
T Consensus 338 --dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 413 (445)
T 2ovr_B 338 --DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI 413 (445)
T ss_dssp --TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred --CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEE
Confidence 99999999999999998876 88899999995 579999999999999999999888777 4788899999
Q ss_pred eeccC
Q 040533 359 KVSPI 363 (364)
Q Consensus 359 ~~sp~ 363 (364)
+|+|.
T Consensus 414 ~~s~~ 418 (445)
T 2ovr_B 414 RASNT 418 (445)
T ss_dssp EECSS
T ss_pred EecCC
Confidence 99985
No 62
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.5e-39 Score=298.51 Aligned_cols=299 Identities=17% Similarity=0.240 Sum_probs=251.6
Q ss_pred eecccCCC--cc--EEEEEeCCeEEEEECCCC------ceeeeeeecCCCCCceEEEEcCCCCEEEEEecC----CcEEE
Q 040533 48 SNMMDWGR--NN--ILAIALGLELYLWKQENG------EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA----SKLQL 113 (364)
Q Consensus 48 ~~~~~~~~--~~--~~~~~~~~~i~iw~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i 113 (364)
+.+++|+| ++ +++++.|+.|++||+.++ +......+..|...|.+++|+|++++|++++.+ +.|.+
T Consensus 67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~ 146 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS 146 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE
T ss_pred EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEE
Confidence 77888888 64 666778999999999866 444556667899999999999999999999987 68888
Q ss_pred EecCCcceeeeeecCCCcEEEEEeecCCCC-EEEEeeCCCcEEEEEcccCcceeeeeecccC---cEEEEEEcCC-CCEE
Q 040533 114 WDAETSKLIRNLEGHDKRVATASWNHWNGH-ILTSGSQDKSIINHDVRVSNNVTSRINAHTA---EVCGLKWSNE-GNLL 188 (364)
Q Consensus 114 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l 188 (364)
|| .++.+..+.+|...|.+++|+| ++. ++++++.|+.|++||+.+.+. ...+..|.. .|.+++|+|+ +++|
T Consensus 147 ~d--~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (615)
T 1pgu_A 147 WD--SGNSLGEVSGHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKF-SASDRTHHKQGSFVRDVEFSPDSGEFV 222 (615)
T ss_dssp TT--TCCEEEECCSCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEE-EEEECSSSCTTCCEEEEEECSTTCCEE
T ss_pred EE--CCCcceeeecCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcce-eeeecccCCCCceEEEEEECCCCCCEE
Confidence 88 6778888999999999999999 665 899999999999999987664 667778988 9999999999 9999
Q ss_pred EEEeCCCeEEEEeCCCCCCCcceEEe-c---ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec---
Q 040533 189 ASGGDDNLVHVWDHSKMSSSKCLHRF-R---DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT--- 261 (364)
Q Consensus 189 ~~~~~d~~i~iwd~~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--- 261 (364)
++++.|+.|++||+++. +.+..+ . .|...|.+++|+ ++ .++++++ .|+.|++||+++++.+..+..
T Consensus 223 ~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~ 295 (615)
T 1pgu_A 223 ITVGSDRKISCFDGKSG---EFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVG--ADATIRVWDVTTSKCVQKWTLDKQ 295 (615)
T ss_dssp EEEETTCCEEEEETTTC---CEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEE--TTSEEEEEETTTTEEEEEEECCTT
T ss_pred EEEeCCCeEEEEECCCC---CEeEEecccccccCCceEEEEEc-CC-CEEEEEc--CCCcEEEEECCCCcEEEEEcCCCC
Confidence 99999999999998764 446666 5 789999999999 66 4556655 789999999876543322211
Q ss_pred --------------------------------------------------------------------------------
Q 040533 262 -------------------------------------------------------------------------------- 261 (364)
Q Consensus 262 -------------------------------------------------------------------------------- 261 (364)
T Consensus 296 ~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v 375 (615)
T 1pgu_A 296 QLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLI 375 (615)
T ss_dssp CGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCE
T ss_pred cccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCce
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 040533 262 -------------------------------------------------------------------------------- 261 (364)
Q Consensus 262 -------------------------------------------------------------------------------- 261 (364)
T Consensus 376 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (615)
T 1pgu_A 376 VSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS 455 (615)
T ss_dssp EEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred EEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc
Confidence
Q ss_pred --------------------------------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc-
Q 040533 262 --------------------------------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH- 308 (364)
Q Consensus 262 --------------------------------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~- 308 (364)
...+.+++|+|++++++++. .|+.|++||+.+++.+..+.+
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~ 529 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD------VMGKILLYDLQSREVKTSRWAF 529 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTEEEECCSCC
T ss_pred CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcC------CCCeEEEeeCCCCcceeEeecC
Confidence 12355667777777777764 499999999999999999888
Q ss_pred cccceeEEeecC----------CCCEEEEEeCCCcEEEEEeeCC-CCCcceeccCCceeeeeeccC
Q 040533 309 QTSRILELSQSP----------DGLTVVSAAADETLRFWEAFGP-SGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 309 ~~~~i~~i~~~~----------~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|...|++++|+| ++++|++++.||.|++||+.++ +.+..+.+|.+.|++++|+|.
T Consensus 530 h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~ 595 (615)
T 1pgu_A 530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP 595 (615)
T ss_dssp CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCC
Confidence 999999999999 9999999999999999999998 677788899999999999985
No 63
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.2e-39 Score=308.36 Aligned_cols=280 Identities=15% Similarity=0.235 Sum_probs=243.8
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+.+++|+|++ +++++.+|.|++||..+++.... +.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 16 v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 93 (814)
T 3mkq_A 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS--IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE--EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE--EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 8889999964 56666789999999999876544 4489999999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 204 (364)
.+|...|.+++|+| ++.+|++++.||.|++||+.++......+.+|...|.+++|+| ++..+++++.||.|++||++.
T Consensus 94 ~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~ 172 (814)
T 3mkq_A 94 EAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172 (814)
T ss_dssp ECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred ecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 99999999999999 9999999999999999999987666778889999999999999 888999999999999999876
Q ss_pred CCCCcceEEecc-cccceeEEEEcc--CCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeee
Q 040533 205 MSSSKCLHRFRD-HRAAVKALAWCP--YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 205 ~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 280 (364)
... ...+.. +...+.+++|+| ++. ++++++ .||.|++||+.+++.+..+.. ...+.+++|+|++++++++
T Consensus 173 ~~~---~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 246 (814)
T 3mkq_A 173 STP---NFTLTTGQERGVNYVDYYPLPDKP-YMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246 (814)
T ss_dssp SSC---SEEEECCCTTCCCEEEECCSTTCC-EEEEEC--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred Ccc---eeEEecCCCCCEEEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 543 444444 448899999999 774 566655 799999999999999988874 4789999999999999988
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCE-EEEEeCCCcEEEEEeeCC
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLT-VVSAAADETLRFWEAFGP 342 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~dg~i~vw~~~~~ 342 (364)
.. |+.|++||+.+++.+..+..|...+.+++|+|++.. +++++.|+.+.+|++...
T Consensus 247 ~~------dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 247 SE------DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp ET------TSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred eC------CCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 54 999999999999999999999999999999999873 244555777888887654
No 64
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-41 Score=301.31 Aligned_cols=283 Identities=8% Similarity=0.116 Sum_probs=212.4
Q ss_pred eCCeEEEEECCCCceee--eeeecCCCCCceEEEEcCC------CCEEEEEecCCcEEEEecCCcce-----------ee
Q 040533 63 LGLELYLWKQENGEVQK--LLKVTGEDDFPTSISWSQD------AKTLAVGYMASKLQLWDAETSKL-----------IR 123 (364)
Q Consensus 63 ~~~~i~iw~~~~~~~~~--~~~~~~~~~~v~~~~~s~~------~~~l~~~~~dg~i~iw~~~~~~~-----------~~ 123 (364)
.|+.|+|||+.+++... ...+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.+++. ..
T Consensus 181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~ 260 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSL 260 (524)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSE
T ss_pred CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceE
Confidence 46789999998876422 2334577889999999997 57999999999999999987642 23
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEE--EEcCCC-CEEEEEeCCCeEEEE
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGL--KWSNEG-NLLASGGDDNLVHVW 200 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~iw 200 (364)
.+.+|...|++++|+| + ..|++|+.||+|++||++++......+.+|...|.++ +|+|++ .+|++++.|++|++|
T Consensus 261 ~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklW 338 (524)
T 2j04_B 261 TLSLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF 338 (524)
T ss_dssp EECCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEE
T ss_pred EEEcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEE
Confidence 6778999999999997 4 4899999999999999987755556688999999999 578887 899999999999999
Q ss_pred eCCCCCCCcceEEeccccc--ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccce
Q 040533 201 DHSKMSSSKCLHRFRDHRA--AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEI 277 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l 277 (364)
|+++. +....+.+|.. .|.+++|+|++.. +++++ .|++|++||++++.++..+. +...|.+++|+|+++++
T Consensus 339 D~~~~---~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~--~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l 412 (524)
T 2j04_B 339 NPKDI---ATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSD--GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMV 412 (524)
T ss_dssp CGGGH---HHHCEEEEECSCCSCCCEEEETTTTE-EEEEC--SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBC
T ss_pred ECCCC---CcccccccccccCcccceEeCCCcCe-EEEeC--CCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeE
Confidence 98764 33445555543 5889999999854 55554 79999999999988766654 55789999999999999
Q ss_pred eeeccCCccCCCCeEEEeeCCCCceeeeccc-----cccceeEEeecCCCCEEEEEeCCCcEEEEEee-CCCCCcceecc
Q 040533 278 LSGHGFSSSGDGQKLCLWKYPHMTKWGELQH-----QTSRILELSQSPDGLTVVSAAADETLRFWEAF-GPSGSGDFVSH 351 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~ 351 (364)
++|.. |+.|++||+... .+..... +...+.+++|+|+++.+. ... .+.+|+.. ++..+..+.+|
T Consensus 413 ~Sgs~------Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh 482 (524)
T 2j04_B 413 LAGSA------DGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAH 482 (524)
T ss_dssp EEEET------TTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------C
T ss_pred EEEEC------CCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCC
Confidence 98854 999999998653 2222211 112578999999998553 222 33344433 45567788899
Q ss_pred CCceeeeeeccC
Q 040533 352 LDGLLSLKVSPI 363 (364)
Q Consensus 352 ~~~v~~~~~sp~ 363 (364)
...|.+|+|||.
T Consensus 483 ~~~V~~Vafsp~ 494 (524)
T 2j04_B 483 GINITCTKWNET 494 (524)
T ss_dssp CCSCCCEEECCS
T ss_pred CceEEEEECCCC
Confidence 999999999996
No 65
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.4e-40 Score=324.69 Aligned_cols=310 Identities=17% Similarity=0.319 Sum_probs=257.1
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.|+.|++||..+++.. ..+.+|...|.+++|+|++++|++|+.||.|+|||+.+++.+..
T Consensus 617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 694 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKL--LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT 694 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEE--EEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 47788888864 666778999999999998764 44559999999999999999999999999999999999999999
Q ss_pred eecCCCcEEEEEeecC-CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 125 LEGHDKRVATASWNHW-NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
+.+|...|.+++|+|. +..++++|+.||.|++||+.++.. ...+.+|...|.+++|+|+++++++++.||.|++||++
T Consensus 695 ~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~ 773 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773 (1249)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGG
T ss_pred EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCC
Confidence 9999999999999984 345899999999999999997764 66778999999999999999999999999999999986
Q ss_pred CCCCCc---------------------------------------------------ceEE-ecccccceeEEEEccCCC
Q 040533 204 KMSSSK---------------------------------------------------CLHR-FRDHRAAVKALAWCPYQF 231 (364)
Q Consensus 204 ~~~~~~---------------------------------------------------~~~~-~~~~~~~v~~~~~~~~~~ 231 (364)
...... .... ..+|...|.+++|+|++.
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 853 (1249)
T 3sfz_A 774 SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH 853 (1249)
T ss_dssp GTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT
T ss_pred CCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC
Confidence 532100 0111 125778899999999985
Q ss_pred cEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeecc----------------------------
Q 040533 232 NVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHG---------------------------- 282 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---------------------------- 282 (364)
++++++ .|+.|++||+.++..+..+..+ ..|.+++|+|+++.++++..
T Consensus 854 -~l~~~~--~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 930 (1249)
T 3sfz_A 854 -LAVIAL--SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVF 930 (1249)
T ss_dssp -EEEEEC--SSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEE
T ss_pred -EEEEEe--CCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEE
Confidence 555554 7999999999999988887654 66889999998888777643
Q ss_pred ---------------------------------------------CCccCCCCeEEEeeCCCCceeeeccccccceeEEe
Q 040533 283 ---------------------------------------------FSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELS 317 (364)
Q Consensus 283 ---------------------------------------------~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~ 317 (364)
+++++.+|.|++||+.+++....+.+|...|++++
T Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~ 1010 (1249)
T 3sfz_A 931 QENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ 1010 (1249)
T ss_dssp ETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEE
T ss_pred cCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEE
Confidence 01123455666666667777777888999999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 318 QSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 318 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|+|+|++|++++.||.|++||+.+++.. .+..|...|.+++|+|.
T Consensus 1011 ~s~dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~ 1055 (1249)
T 3sfz_A 1011 FTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQD 1055 (1249)
T ss_dssp ECSSSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSS
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCC
Confidence 9999999999999999999999987665 34588999999999984
No 66
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.9e-39 Score=276.35 Aligned_cols=284 Identities=19% Similarity=0.276 Sum_probs=230.8
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecCCcc-----eeeeeecCCCcEEEEEeec
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAETSK-----LIRNLEGHDKRVATASWNH 139 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~ 139 (364)
.++++...+.+.....++.+|.+.|++++|+|+ +++||+|+.||+|+|||+.+.+ ....+.+|...|.+++|+|
T Consensus 17 ~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~ 96 (340)
T 4aow_A 17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 96 (340)
T ss_dssp ---------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT
T ss_pred cEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC
Confidence 355555555555445567899999999999997 6899999999999999987653 4567888999999999999
Q ss_pred CCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc
Q 040533 140 WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA 219 (364)
Q Consensus 140 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 219 (364)
++++|++++.|+.|++|+...... ......+...+..+.+++++++|++++.|+.+++||+.... .......+|..
T Consensus 97 -dg~~l~s~~~d~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~--~~~~~~~~~~~ 172 (340)
T 4aow_A 97 -DGQFALSGSWDGTLRLWDLTTGTT-TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC--KYTVQDESHSE 172 (340)
T ss_dssp -TSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE--EEEECSSSCSS
T ss_pred -CCCEEEEEcccccceEEeecccce-eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc--eEEEEeccccC
Confidence 999999999999999999986654 55566788889999999999999999999999999976532 33445567889
Q ss_pred ceeEEEEccCCCc-EEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 220 AVKALAWCPYQFN-VLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 220 ~v~~~~~~~~~~~-~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
.+..++|++++.. ++++++ .|+.|++||+++++.+..+.. ...|.+++|+|++++++++.. |+.|++||+
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~--~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~------Dg~i~iwd~ 244 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCG--WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK------DGQAMLWDL 244 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET------TCEEEEEET
T ss_pred cccceEEccCCCCcEEEEEc--CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC------CCeEEEEEe
Confidence 9999999987644 556665 899999999999999888865 478999999999999998854 999999999
Q ss_pred CCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcc---------eeccCCceeeeeeccC
Q 040533 298 PHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGD---------FVSHLDGLLSLKVSPI 363 (364)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~---------~~~~~~~v~~~~~sp~ 363 (364)
.+.+++..+..+ ..|.++.|+|++. +++++.|+.|++||++++..... ..+|...|++++|+|.
T Consensus 245 ~~~~~~~~~~~~-~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 317 (340)
T 4aow_A 245 NEGKHLYTLDGG-DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD 317 (340)
T ss_dssp TTTEEEEEEECS-SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT
T ss_pred ccCceeeeecCC-ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC
Confidence 999999888755 5799999999875 55666799999999887644332 3368899999999995
No 67
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.8e-40 Score=312.93 Aligned_cols=271 Identities=16% Similarity=0.272 Sum_probs=245.5
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
..+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+..|..+|.+++|+| ++++|++++.||.|++||+.
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETT
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECC
Confidence 44568999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred cCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 161 VSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
+++. ...+.+|...|.+++|+|++++|++++.||.|++||++.. ......+.+|...|.+++|+|.+...+++++
T Consensus 86 ~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-- 160 (814)
T 3mkq_A 86 TGEK-VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN--WALEQTFEGHEHFVMCVAFNPKDPSTFASGC-- 160 (814)
T ss_dssp TCCE-EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT--SEEEEEEECCSSCEEEEEEETTEEEEEEEEE--
T ss_pred CCcE-EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC--ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe--
Confidence 7764 6677889999999999999999999999999999998754 2456677889999999999994336777766
Q ss_pred CCCeEEEEECCCCeEEEEEecC--CCeEEEEEcC--CccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEE
Q 040533 241 QDGCIKIWNVQKGTCIHSVDTK--AQICGLEWNR--HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILEL 316 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i 316 (364)
.||.|++||+.++.....+..+ ..+..++|+| ++.+++++.. ++.|++||+.+++.+..+.+|...|.++
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~v~~~ 234 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD------DLTIKIWDYQTKSCVATLEGHMSNVSFA 234 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT------TSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC------CCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 8999999999988777666543 7799999999 9999998854 9999999999999999999999999999
Q ss_pred eecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 317 SQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 317 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+|+|++++|++++.||.|++||+.+++....+..|...+.+++|+|.
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 281 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTT
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccC
Confidence 99999999999999999999999999888888899999999999985
No 68
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.2e-40 Score=282.86 Aligned_cols=269 Identities=14% Similarity=0.247 Sum_probs=225.4
Q ss_pred ecCCCCCceEEEEcCCCCEE-EEEec---CCcEEEEecCCcceeeee-ecCCCcEEEEEeecCC---CCEEEEeeCCCcE
Q 040533 83 VTGEDDFPTSISWSQDAKTL-AVGYM---ASKLQLWDAETSKLIRNL-EGHDKRVATASWNHWN---GHILTSGSQDKSI 154 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l-~~~~~---dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i 154 (364)
..+|...|.+++|+|++..+ ++|+. ||.|++||+.+++..... .+|...|.+++|+| + +.+|++++.||.|
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGA-TSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTT-CCTTTCCEEEEETTSCE
T ss_pred ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcC-CCCCCceEEEecCCCeE
Confidence 35799999999999999655 55655 899999999988765443 36899999999999 6 7999999999999
Q ss_pred EEEEcccCcceeeeeecccCcEEEEE------EcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc----ceeEE
Q 040533 155 INHDVRVSNNVTSRINAHTAEVCGLK------WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA----AVKAL 224 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~v~~~ 224 (364)
++||+.+++.....+.+|...|.+++ |+|++++|++++.|+.|++||++... ..+..+..+.+ .+.++
T Consensus 93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD--DPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS--SCSEEECCCTTSCCCCEEEE
T ss_pred EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC--CcceeccccCCCCCCceEEE
Confidence 99999987745777889999999995 57889999999999999999988754 23555554444 78888
Q ss_pred E----EccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcC---CccceeeeccCCccCCCCeEEEeeC
Q 040533 225 A----WCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNR---HHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 225 ~----~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
+ |+|++ .++++++ .|+.|++||+++++......+...+.+++|+| ++.+++++.. ++.|++||+
T Consensus 171 ~~~~~~~~~~-~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~ 241 (357)
T 3i2n_A 171 AFGNAYNQEE-RVVCAGY--DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSL------EGKFHVFDM 241 (357)
T ss_dssp EEECCCC-CC-CEEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEES------TTEEEEEEE
T ss_pred EEEeccCCCC-CEEEEEc--cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECC------CCeEEEEeC
Confidence 8 67887 4566655 79999999999999888888889999999999 8999998854 999999999
Q ss_pred CCCceeeecc-----ccccceeEEeecCCCC-EEEEEeCCCcEEEEEeeCCCC-------------------CcceeccC
Q 040533 298 PHMTKWGELQ-----HQTSRILELSQSPDGL-TVVSAAADETLRFWEAFGPSG-------------------SGDFVSHL 352 (364)
Q Consensus 298 ~~~~~~~~~~-----~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~~~~~~-------------------~~~~~~~~ 352 (364)
++++.+..+. .|...|++++|+|+++ +|++++.||.|++||+..+.. +..+.+|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST 321 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCC
Confidence 8877766655 8999999999999998 899999999999999987543 34566899
Q ss_pred CceeeeeeccC
Q 040533 353 DGLLSLKVSPI 363 (364)
Q Consensus 353 ~~v~~~~~sp~ 363 (364)
++|++++|+|.
T Consensus 322 ~~v~~~~~s~~ 332 (357)
T 3i2n_A 322 QPISSLDWSPD 332 (357)
T ss_dssp SCEEEEEECSS
T ss_pred CCeeEEEEcCC
Confidence 99999999986
No 69
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-39 Score=272.22 Aligned_cols=264 Identities=16% Similarity=0.226 Sum_probs=232.8
Q ss_pred eeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE
Q 040533 79 KLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD 158 (364)
Q Consensus 79 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 158 (364)
....+.+|.+.|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+| ++++|++++.||.|++|+
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEE
T ss_pred HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEE
Confidence 34556799999999999 9999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cccCc--ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 159 VRVSN--NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 159 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
+.... .....+..|...|.+++| +++++++++.|+.|++|| .......+..|...+.++.|.|.....+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-----EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-----TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-----CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 87653 335667789999999999 567999999999999999 234577788899999999999944466777
Q ss_pred ecCCCCCeEEEEECCCCeEEEEEe--cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccccee
Q 040533 237 GGGTQDGCIKIWNVQKGTCIHSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL 314 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 314 (364)
++ .|+.|++|| .++....+. +...+.+++|+|++. ++++.. ++.|++||+++++.+..+..|...|+
T Consensus 161 ~~--~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~ 229 (313)
T 3odt_A 161 AS--ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN------DGLIKLVDMHTGDVLRTYEGHESFVY 229 (313)
T ss_dssp EE--TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET------TSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EE--CCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC------CCeEEEEECCchhhhhhhhcCCceEE
Confidence 66 899999999 455666665 457899999999999 666643 99999999999999999999999999
Q ss_pred EEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 315 ELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+++|+|++ .|++++.||.|++||+.+++....+..|..+|.+++|+|.
T Consensus 230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 277 (313)
T 3odt_A 230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSN 277 (313)
T ss_dssp EEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTT
T ss_pred EEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccC
Confidence 99999999 6999999999999999999999999999999999999985
No 70
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-40 Score=293.11 Aligned_cols=266 Identities=23% Similarity=0.412 Sum_probs=231.0
Q ss_pred CCceEEEEcCCCC-EEEEE----------ecCCcEEEEecCCcc---eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCc
Q 040533 88 DFPTSISWSQDAK-TLAVG----------YMASKLQLWDAETSK---LIRNLEGHDKRVATASWNHWNGHILTSGSQDKS 153 (364)
Q Consensus 88 ~~v~~~~~s~~~~-~l~~~----------~~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 153 (364)
..|.+++|+|+++ +|++| +.||.|+|||+.+++ .+..+ .|...|.+++|+| ++.+|++++.||.
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSH-NNKIIAGALDNGS 90 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECS-SSSCEEEEESSSC
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECC-CCCeEEEEccCCe
Confidence 4688999999987 99999 889999999999876 33334 4889999999999 9999999999999
Q ss_pred EEEEEccc---CcceeeeeecccCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCC------CCcceEEecccccceeE
Q 040533 154 IINHDVRV---SNNVTSRINAHTAEVCGLKWSNE-GNLLASGGDDNLVHVWDHSKMS------SSKCLHRFRDHRAAVKA 223 (364)
Q Consensus 154 i~~~d~~~---~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~v~~ 223 (364)
|++||+.. +......+..|...|.+++|+|+ +++|++++.|+.|++||++... ..........|...|.+
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS 170 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence 99999987 23356778889999999999998 8999999999999999998765 22223334678899999
Q ss_pred EEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-------CCCeEEEEEcCCcc-ceeeeccCCccCCCC---eE
Q 040533 224 LAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-------KAQICGLEWNRHHK-EILSGHGFSSSGDGQ---KL 292 (364)
Q Consensus 224 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-------~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~---~i 292 (364)
++|+|++..++++++ .|+.|++||+++++.+..+.. ...+.+++|+|++. +++++.. ++ .|
T Consensus 171 ~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------d~~~~~i 242 (416)
T 2pm9_A 171 LAWNQSLAHVFASAG--SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG------SDNDPSI 242 (416)
T ss_dssp EEECSSCTTEEEEES--SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC------CSSSCCC
T ss_pred EEeCCCCCcEEEEEc--CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEEC------CCCCceE
Confidence 999999668888876 899999999999999988875 46799999999984 5666643 66 99
Q ss_pred EEeeCCCC-ceeeecc-ccccceeEEeecC-CCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 293 CLWKYPHM-TKWGELQ-HQTSRILELSQSP-DGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 293 ~i~d~~~~-~~~~~~~-~~~~~i~~i~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++||++++ .++..+. +|...|++++|+| ++++|++++.||.|++||+.+++.+..+..|.+.|.+++|+|.
T Consensus 243 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 316 (416)
T 2pm9_A 243 LIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPE 316 (416)
T ss_dssp CEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTT
T ss_pred EEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCC
Confidence 99999986 6777787 8999999999999 9999999999999999999999999999999999999999995
No 71
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2e-39 Score=286.79 Aligned_cols=287 Identities=18% Similarity=0.404 Sum_probs=232.0
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
+.+++++++.+++++.|+.|++||..+++... .+.+|...|.+++| ++++|++|+.||.|++||+.+++.+..+.+
T Consensus 136 v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 211 (435)
T 1p22_A 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR--ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH 211 (435)
T ss_dssp EEEEECCSSEEEEEESSSCEEEEESSSCCEEE--EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECC
T ss_pred EEEEEECCCEEEEEeCCCeEEEEeCCCCeEEE--EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcC
Confidence 66788877778899999999999999988654 45589999999998 788999999999999999999999999999
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee--eeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT--SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKM 205 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 205 (364)
|...|.+++|+ ++.+++|+.||.|++||+.++.... ..+.+|...|.+++| +++++++++.||.|++||+++.
T Consensus 212 h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~ 286 (435)
T 1p22_A 212 HCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC 286 (435)
T ss_dssp CCSCEEEEECC---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC
T ss_pred CCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC
Confidence 99999999995 4699999999999999998776432 567789999999999 6789999999999999998765
Q ss_pred CCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCC
Q 040533 206 SSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFS 284 (364)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~ 284 (364)
+.+..+.+|...|.++.|++ .++++++ .||.|++||+++++++..+..+ ..+.+++| ++.+++++..
T Consensus 287 ---~~~~~~~~~~~~v~~~~~~~---~~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~-- 354 (435)
T 1p22_A 287 ---EFVRTLNGHKRGIACLQYRD---RLVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY-- 354 (435)
T ss_dssp ---CEEEEEECCSSCEEEEEEET---TEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEET--
T ss_pred ---cEEEEEcCCCCcEEEEEeCC---CEEEEEe--CCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeC--
Confidence 45888889999999999953 5677766 8999999999999999988754 67999998 6788888754
Q ss_pred ccCCCCeEEEeeCCCCc---------eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCce
Q 040533 285 SSGDGQKLCLWKYPHMT---------KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGL 355 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~~~---------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v 355 (364)
||.|++||+.++. .+..+.+|.+.|.+++| ++.+|++|+.||.|++||+.+........ ...+.
T Consensus 355 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~ 427 (435)
T 1p22_A 355 ----DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPS 427 (435)
T ss_dssp ----TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------------
T ss_pred ----CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCc
Confidence 9999999997665 78888999999999999 78899999999999999998876654433 34456
Q ss_pred eeeeecc
Q 040533 356 LSLKVSP 362 (364)
Q Consensus 356 ~~~~~sp 362 (364)
.++.|.|
T Consensus 428 ~~~~~~~ 434 (435)
T 1p22_A 428 RTYTYIS 434 (435)
T ss_dssp -------
T ss_pred cceeeec
Confidence 6666654
No 72
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-40 Score=312.43 Aligned_cols=303 Identities=11% Similarity=0.087 Sum_probs=227.7
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee---
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI--- 122 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--- 122 (364)
.+.+++|+++. +++++.|+.|++||+.+++....+ .|...|++++|+|++++|++|+.||.|++||+++++..
T Consensus 60 ~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~---~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~ 136 (902)
T 2oaj_A 60 AIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTV---FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFK 136 (902)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEE---ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEE---cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccce
Confidence 47888998866 778888999999999998765444 36678999999999999999999999999999988753
Q ss_pred --------eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc------------------cCcE
Q 040533 123 --------RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH------------------TAEV 176 (364)
Q Consensus 123 --------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~------------------~~~v 176 (364)
..+.+|..+|.+++|+|.++..|++|+.||.| +||+++++. ...+..| ...|
T Consensus 137 i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~h~~~V 214 (902)
T 2oaj_A 137 LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI-KQSFIYELPPFAPGGDFSEKTNEKRTPKV 214 (902)
T ss_dssp ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE-EEEECCCBCTTCCCSTTCCCTTSCBCCCE
T ss_pred eccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce-EEEEecccCCcCCCcccccccccccCCCe
Confidence 23467899999999999556899999999999 999987664 4444443 5789
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEE--e---cc-------------cccceeEEEEc----cCCCcEE
Q 040533 177 CGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR--F---RD-------------HRAAVKALAWC----PYQFNVL 234 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~---~~-------------~~~~v~~~~~~----~~~~~~~ 234 (364)
.+++|+|+|++|++++.||.|++||+++++. +.. + .. |...|.+++|+ |++..++
T Consensus 215 ~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~---~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll 291 (902)
T 2oaj_A 215 IQSLYHPNSLHIITIHEDNSLVFWDANSGHM---IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLL 291 (902)
T ss_dssp EEEEECTTSSEEEEEETTCCEEEEETTTCCE---EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCcE---EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEE
Confidence 9999999999999999999999999876432 221 1 11 24468888885 3333555
Q ss_pred EeecCC--------------------------------------------------------------------------
Q 040533 235 ASGGGT-------------------------------------------------------------------------- 240 (364)
Q Consensus 235 ~~~~g~-------------------------------------------------------------------------- 240 (364)
++++..
T Consensus 292 ~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s 371 (902)
T 2oaj_A 292 ISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLIL 371 (902)
T ss_dssp EEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE
T ss_pred EeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEc
Confidence 555300
Q ss_pred CCCeEEEEECCCCeEEEE-------E-ecCCC----------------------------------eEEEEEcCCcccee
Q 040533 241 QDGCIKIWNVQKGTCIHS-------V-DTKAQ----------------------------------ICGLEWNRHHKEIL 278 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~-------~-~~~~~----------------------------------v~~~~~~~~~~~l~ 278 (364)
.|+.|++||+.++..... + .++.. +..++|+|+++.++
T Consensus 372 ~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~la 451 (902)
T 2oaj_A 372 GNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFI 451 (902)
T ss_dssp TTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEE
T ss_pred CCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEE
Confidence 134455555544422111 0 00012 23345578888888
Q ss_pred eeccCCccCCCCeEEEeeCCCCceee--ec----c-----ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC---
Q 040533 279 SGHGFSSSGDGQKLCLWKYPHMTKWG--EL----Q-----HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG--- 344 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d~~~~~~~~--~~----~-----~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~--- 344 (364)
+++. |++|++||+.++.... .+ . +|...|++++|+|+|++||+|+.||+|+||++.+++.
T Consensus 452 Sgs~------DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~ 525 (902)
T 2oaj_A 452 TGHS------NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSV 525 (902)
T ss_dssp EEET------TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---
T ss_pred EecC------CCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCc
Confidence 8754 9999999998874321 11 1 7888999999999999999999999999999987632
Q ss_pred ------------------------------------------CcceeccCCceeeeeeccC
Q 040533 345 ------------------------------------------SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 345 ------------------------------------------~~~~~~~~~~v~~~~~sp~ 363 (364)
+..+.+|.+.|++|+|||.
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd 586 (902)
T 2oaj_A 526 ENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI 586 (902)
T ss_dssp ------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT
T ss_pred cccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC
Confidence 3456689999999999995
No 73
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.3e-41 Score=290.22 Aligned_cols=245 Identities=12% Similarity=0.157 Sum_probs=204.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc--ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS--KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
.+.+.|++++|+|++++|++|+.||.|+|||+.++ +.+..+.+|...|.+++|+| ++++|++++.|+.|++||+.++
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC-----
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 45678999999999999999999999999999988 77888999999999999999 8999999999999999999876
Q ss_pred c--ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc-cccceeEEEEccCCCcEEEeecC
Q 040533 163 N--NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD-HRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 163 ~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
. .....+..|...|.+++|+|++++|++++.|+.|++||++..........+.. |...|.+++|+|++ .++++++
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~- 165 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN-VLLAAGC- 165 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS-SEEEEEE-
T ss_pred CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC-CEEEEEe-
Confidence 5 23455678999999999999999999999999999999987654445677777 99999999999988 4666665
Q ss_pred CCCCeEEEEECC------------------CCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 240 TQDGCIKIWNVQ------------------KGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 240 ~~d~~i~i~d~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
.|+.|++||+. .++++..+.+...|.+++|+|++++++++.. |+.|++||+.+++
T Consensus 166 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 166 -ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH------DSSVTIAYPSAPE 238 (377)
T ss_dssp -SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET------TTEEC-CEECSTT
T ss_pred -CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC------CCcEEEEECCCCC
Confidence 79999999985 2445555555678999999999999998854 9999999999998
Q ss_pred e----eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 302 K----WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 302 ~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
. +..+..|...|.+++|+|++++|++++.|+.+ +|+..
T Consensus 239 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 239 QPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 8 88889999999999999999999999877666 66654
No 74
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-40 Score=290.53 Aligned_cols=277 Identities=13% Similarity=0.222 Sum_probs=224.3
Q ss_pred eeecccCCC-cc--EEEEEeCCeEEEEECCC---Cceee-eeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC--
Q 040533 47 YSNMMDWGR-NN--ILAIALGLELYLWKQEN---GEVQK-LLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE-- 117 (364)
Q Consensus 47 ~~~~~~~~~-~~--~~~~~~~~~i~iw~~~~---~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-- 117 (364)
.+.+++|+| ++ +++++.|+.|++||+.+ +.... ...+ +|...|++++|+|++++|++|+.||.|++||++
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~ 143 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHY 143 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccc
Confidence 478888888 53 67778899999999876 44222 2333 689999999999999999999999999999995
Q ss_pred -Ccceeeeeec------------CCCcEEEEE--eecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec--ccCcEEEEE
Q 040533 118 -TSKLIRNLEG------------HDKRVATAS--WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA--HTAEVCGLK 180 (364)
Q Consensus 118 -~~~~~~~~~~------------~~~~v~~~~--~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~v~~~~ 180 (364)
+++....+.. +...+.++. +++ ++.+|++++.||.|++||+++++. ...+.. |...|.+++
T Consensus 144 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~ 221 (437)
T 3gre_A 144 QQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLER-LQIIENSPRHGAVSSIC 221 (437)
T ss_dssp EETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCE-EEEEECCGGGCCEEEEE
T ss_pred cCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCee-eEEEccCCCCCceEEEE
Confidence 5555444332 445566666 446 789999999999999999987765 555666 889999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec-ccccceeEEEEccC---CCcEEEeecCCCCCeEEEEECCCCeEE
Q 040533 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR-DHRAAVKALAWCPY---QFNVLASGGGTQDGCIKIWNVQKGTCI 256 (364)
Q Consensus 181 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~~~~~~~g~~d~~i~i~d~~~~~~~ 256 (364)
|+|++++|++|+.||.|++||++.. +.+..+. .|...|.+++|+|. ...++++++ .|+.|++||+++++.+
T Consensus 222 ~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~ 296 (437)
T 3gre_A 222 IDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS--SKTFLTIWNFVKGHCQ 296 (437)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES--TTEEEEEEETTTTEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceEEEEeccccCCCccEEEEEc--CCCcEEEEEcCCCcEE
Confidence 9999999999999999999998863 4466665 67789999977763 224777766 8999999999999988
Q ss_pred EEEec---------------------------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc-
Q 040533 257 HSVDT---------------------------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH- 308 (364)
Q Consensus 257 ~~~~~---------------------------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~- 308 (364)
..+.. ...|.+++|+ ++++++++.. |+.|++||+.+++....+.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 297 YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA------TSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG------GTEEEEEETTCGGGCEEEECC
T ss_pred EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC------CCeEEEEECCCcccceEEecc
Confidence 88762 2347888888 7788888754 99999999999887776665
Q ss_pred ------------------------------------cccceeEEeecCC--CCEEEEEeCCCcEEEEE
Q 040533 309 ------------------------------------QTSRILELSQSPD--GLTVVSAAADETLRFWE 338 (364)
Q Consensus 309 ------------------------------------~~~~i~~i~~~~~--~~~l~~~~~dg~i~vw~ 338 (364)
|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 370 SRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 7889999999998 78999999999999995
No 75
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.8e-39 Score=284.63 Aligned_cols=275 Identities=12% Similarity=0.122 Sum_probs=223.8
Q ss_pred ccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC
Q 040533 51 MDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128 (364)
Q Consensus 51 ~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 128 (364)
..|+++ .+++++.|+.|++||+.+++... .+.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|
T Consensus 103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 180 (420)
T 3vl1_A 103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQRE--IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180 (420)
T ss_dssp EEECSSSCEEEEEETTSCEEEECTTSCEEEE--ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC
T ss_pred EEEecCCCEEEEEECCCCEEEEeCCCcceee--ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC
Confidence 345554 46677789999999999887643 34589999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec---ccCcEE---------------------EEEEcCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA---HTAEVC---------------------GLKWSNE 184 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~v~---------------------~~~~~~~ 184 (364)
...|.+++|+| ++++|++++.||.|++||+++++. ...+.. +...+. +++|+|+
T Consensus 181 ~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 258 (420)
T 3vl1_A 181 RATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTT-IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY 258 (420)
T ss_dssp SSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEE-EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT
T ss_pred CCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCce-eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC
Confidence 99999999999 999999999999999999987764 444443 334444 4556789
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE-EEEEe--
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC-IHSVD-- 260 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~-- 260 (364)
+++|++++.||.|++||++.... +..+ ..|...|.+++|+|++..++++++ .||.|++||+++++. +..+.
T Consensus 259 ~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~ 333 (420)
T 3vl1_A 259 GKYVIAGHVSGVITVHNVFSKEQ---TIQLPSKFTCSCNSLTVDGNNANYIYAGY--ENGMLAQWDLRSPECPVGEFLIN 333 (420)
T ss_dssp TEEEEEEETTSCEEEEETTTCCE---EEEECCTTSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEEES
T ss_pred CCEEEEEcCCCeEEEEECCCCce---eEEcccccCCCceeEEEeCCCCCEEEEEe--CCCeEEEEEcCCCcCchhhhhcc
Confidence 99999999999999999887532 3333 457889999999999976888876 899999999998743 55554
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc---------eeeeccccccceeEEeecCCCC---EEEEE
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT---------KWGELQHQTSRILELSQSPDGL---TVVSA 328 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~---------~~~~~~~~~~~i~~i~~~~~~~---~l~~~ 328 (364)
+...+.++.+ +++.+++++. .|+.|++|++.... ....+..|...|.+++|+|+++ .|+++
T Consensus 334 ~~~~v~~~~~-~~~~~l~s~~------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~ 406 (420)
T 3vl1_A 334 EGTPINNVYF-AAGALFVSSG------FDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEV 406 (420)
T ss_dssp TTSCEEEEEE-ETTEEEEEET------TTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEE
T ss_pred CCCCceEEEe-CCCCEEEEec------CCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEE
Confidence 3466777755 5777888774 49999999987732 2223456788999999999999 78888
Q ss_pred eCCCcEEEEEeeC
Q 040533 329 AADETLRFWEAFG 341 (364)
Q Consensus 329 ~~dg~i~vw~~~~ 341 (364)
+.+|.+.+|+++.
T Consensus 407 g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 407 GKNNFCALYNLSN 419 (420)
T ss_dssp ETTTEEEEEESCC
T ss_pred cCCceEEEEeccC
Confidence 8899999999865
No 76
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.3e-39 Score=285.09 Aligned_cols=283 Identities=16% Similarity=0.264 Sum_probs=230.0
Q ss_pred eecccCCCccEEE---EEeCCeEEEEECCCCce--eeeeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCc--
Q 040533 48 SNMMDWGRNNILA---IALGLELYLWKQENGEV--QKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETS-- 119 (364)
Q Consensus 48 ~~~~~~~~~~~~~---~~~~~~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~-- 119 (364)
...++++++.... ++.+|.|++|++..... .....+.+|...|++++|+| ++++|++|+.||.|+|||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 4557777765332 46789999999865432 22334568999999999999 9999999999999999999987
Q ss_pred -----ceeeeeecCCCcEEEEEeecCCC-CEEEEeeCCCcEEEEEcccCcceeeee--ecccCcEEEEEEcCCCCEEEEE
Q 040533 120 -----KLIRNLEGHDKRVATASWNHWNG-HILTSGSQDKSIINHDVRVSNNVTSRI--NAHTAEVCGLKWSNEGNLLASG 191 (364)
Q Consensus 120 -----~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~ 191 (364)
+.+..+.+|...|.+++|+| ++ ++|++++.||.|++||+++++. ...+ ..|...|.+++|+|++++|+++
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred ccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 56788889999999999999 65 7999999999999999997764 5555 7899999999999999999999
Q ss_pred eCCCeEEEEeCCCCCCCcceEEe-cccccc-eeEEEEccCCCcEEEee-cCCCCCeEEEEECCCCeE---EEEEecCCCe
Q 040533 192 GDDNLVHVWDHSKMSSSKCLHRF-RDHRAA-VKALAWCPYQFNVLASG-GGTQDGCIKIWNVQKGTC---IHSVDTKAQI 265 (364)
Q Consensus 192 ~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~~~~~-~g~~d~~i~i~d~~~~~~---~~~~~~~~~v 265 (364)
+.|+.|++||++.. +.+..+ ..|.+. +.++.|+|++ .+++++ .++.|+.|++||+++++. ...+.+...+
T Consensus 195 ~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 270 (402)
T 2aq5_A 195 CRDKRVRVIEPRKG---TVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270 (402)
T ss_dssp ETTSEEEEEETTTT---EEEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred ecCCcEEEEeCCCC---ceeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence 99999999998864 446666 577665 8999999998 566665 012799999999998654 3333456789
Q ss_pred EEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-eeeccc--cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 266 CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-WGELQH--QTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
.+++|+|++++++++. +.|+.|++||+.++++ +..+.. |...|.+++|+|++.++++ .++.+++|++.++
T Consensus 271 ~~~~~s~~~~~l~~~g-----~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCG-----KGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp EEEEEETTTTEEEEEE-----TTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred eEEEEcCCCCEEEEEE-----cCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 9999999999987542 3499999999998884 444444 4589999999999998774 5679999999875
Q ss_pred C
Q 040533 343 S 343 (364)
Q Consensus 343 ~ 343 (364)
.
T Consensus 344 ~ 344 (402)
T 2aq5_A 344 K 344 (402)
T ss_dssp E
T ss_pred c
Confidence 4
No 77
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=7.1e-39 Score=274.52 Aligned_cols=259 Identities=19% Similarity=0.306 Sum_probs=217.1
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc----ceeeeeecCCCcEEEEEeecC-CCCEEEEeeCCCcEEEE
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS----KLIRNLEGHDKRVATASWNHW-NGHILTSGSQDKSIINH 157 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~ 157 (364)
+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|.+++|+|. ++++|++++.||.|++|
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 3589999999999999999999999999999999876 466777889999999999984 48999999999999999
Q ss_pred EcccCc--------ceeeeeecccCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCCCCcceEE----------eccc
Q 040533 158 DVRVSN--------NVTSRINAHTAEVCGLKWSNE--GNLLASGGDDNLVHVWDHSKMSSSKCLHR----------FRDH 217 (364)
Q Consensus 158 d~~~~~--------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------~~~~ 217 (364)
|++.+. .....+..|...|.+++|+|+ +.+|++++.||.|++||++.......... ...|
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence 998764 345667789999999999999 99999999999999999987654222211 1246
Q ss_pred ccceeEEEEccC--CCcEEEeecCCCCCeEEEEECCCCeE--EEEEe-cCCCeEEEEEcCCc----cceeeeccCCccCC
Q 040533 218 RAAVKALAWCPY--QFNVLASGGGTQDGCIKIWNVQKGTC--IHSVD-TKAQICGLEWNRHH----KEILSGHGFSSSGD 288 (364)
Q Consensus 218 ~~~v~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~~-~~~~v~~~~~~~~~----~~l~~~~~~~~~~~ 288 (364)
...+.+++|+|+ ...++++++ .++.+.+|+...++. +..+. +...|.+++|+|++ .+++++..
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~------ 238 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSA--LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK------ 238 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEE--TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET------
T ss_pred ccceeEEEeccCCCCCcEEEEec--CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC------
Confidence 778999999997 235666665 799998888887765 44443 45789999999998 78888754
Q ss_pred CCeEEEeeCCCC----------------------------------------------ceeeeccccccceeEEeecCCC
Q 040533 289 GQKLCLWKYPHM----------------------------------------------TKWGELQHQTSRILELSQSPDG 322 (364)
Q Consensus 289 ~~~i~i~d~~~~----------------------------------------------~~~~~~~~~~~~i~~i~~~~~~ 322 (364)
|+.|++||+.++ +.+..+.+|...|++++|+|++
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 318 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG 318 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence 999999999764 5667778899999999999999
Q ss_pred CEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 323 LTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 323 ~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
++|++++.||.|++|++.+++....+.
T Consensus 319 ~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 319 TILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp CCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred CEEEEecCCCcEEEEecCcCcchhhee
Confidence 999999999999999999887665543
No 78
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=9.2e-40 Score=290.01 Aligned_cols=247 Identities=12% Similarity=0.256 Sum_probs=207.6
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc-----------eeeeeecCC------------CcEEEEEeecCC
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-----------LIRNLEGHD------------KRVATASWNHWN 141 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~ 141 (364)
.+.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|.+++|+| +
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP-Q 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-C
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-C
Confidence 457899999999999999999999999999998876 477888998 8899999999 7
Q ss_pred C--CEEEEeeCCCcEEEEEcccCcce---------------------------------------eeeeecccCcEEEEE
Q 040533 142 G--HILTSGSQDKSIINHDVRVSNNV---------------------------------------TSRINAHTAEVCGLK 180 (364)
Q Consensus 142 ~--~~l~~~~~dg~i~~~d~~~~~~~---------------------------------------~~~~~~~~~~v~~~~ 180 (364)
+ .+|++++.|+.|++||+..+... .....+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 6 79999999999999999764321 012357999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCCCCcceE-------EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC
Q 040533 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLH-------RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253 (364)
Q Consensus 181 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 253 (364)
|+|++++|++| .|+.|++||++... ..+. .+.+|...|.+++|+|++..++++++ .||.|++||++++
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITD--RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS--SKGTIRLCDMRAS 259 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEE--EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE--TTSCEEEEETTTC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCC--ceeeeeecccccccccCcceEEEEECCCCCcEEEEEe--CCCeEEEEECcCC
Confidence 99999999998 79999999987422 2222 35678999999999999867788876 8999999999998
Q ss_pred eE----EEEEecCC-------------CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC-Cceeeeccccccc---
Q 040533 254 TC----IHSVDTKA-------------QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH-MTKWGELQHQTSR--- 312 (364)
Q Consensus 254 ~~----~~~~~~~~-------------~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~--- 312 (364)
+. ...+..+. .+.+++|+|++++++++. ++.|++||+++ ++++..+..|...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~~~v~iwd~~~~~~~~~~~~~~~~~~~~ 332 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-------YLSVKVWDLNMENRPVETYQVHEYLRSK 332 (447)
T ss_dssp SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-------SSEEEEEETTCCSSCSCCEESCGGGTTT
T ss_pred ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-------CCeEEEEeCCCCccccceeecccccccc
Confidence 86 66776553 899999999999999874 49999999997 8888888888642
Q ss_pred ------------eeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 313 ------------ILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 313 ------------i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
+..++|+|++++|++|+.||.|++||+.+++.
T Consensus 333 l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 333 LCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp HHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred ccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 23499999999999999999999999988764
No 79
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.4e-38 Score=275.66 Aligned_cols=289 Identities=16% Similarity=0.215 Sum_probs=228.4
Q ss_pred eeecccCCC-cc--EEEEEeCCeEEEEECCCCceeeeeee-----------cCCCCCceEEEEcC-CCCEEEEEecCCcE
Q 040533 47 YSNMMDWGR-NN--ILAIALGLELYLWKQENGEVQKLLKV-----------TGEDDFPTSISWSQ-DAKTLAVGYMASKL 111 (364)
Q Consensus 47 ~~~~~~~~~-~~--~~~~~~~~~i~iw~~~~~~~~~~~~~-----------~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 111 (364)
.+.+++|+| ++ +++++.||.|++||+.+++....... .+|...|.+++|+| ++++|++++.||.|
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 124 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL 124 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEE
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeE
Confidence 478888888 43 66777899999999998765444332 25999999999999 77899999999999
Q ss_pred EEEecCCcceeeeeecCCCcEEEEEeecC--CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC-EE
Q 040533 112 QLWDAETSKLIRNLEGHDKRVATASWNHW--NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN-LL 188 (364)
Q Consensus 112 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 188 (364)
++||+.+++....+. +...+.++.|+|. ++.++++++.||.|++||++++.. ...+..|...|.+++|+|+++ ++
T Consensus 125 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ll 202 (408)
T 4a11_B 125 KVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVSWSPRYDYIL 202 (408)
T ss_dssp EEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEEECSSCTTEE
T ss_pred EEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEEECCCCCcEE
Confidence 999999999888877 7788999999883 233999999999999999987764 667788999999999999988 58
Q ss_pred EEEeCCCeEEEEeCCCCCCCcceEEe---------------cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC
Q 040533 189 ASGGDDNLVHVWDHSKMSSSKCLHRF---------------RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253 (364)
Q Consensus 189 ~~~~~d~~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 253 (364)
++++.||.|++||++.... .+..+ ..|...|.+++|+|++. .+++++ .|+.|++||+.++
T Consensus 203 ~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~vwd~~~~ 277 (408)
T 4a11_B 203 ATASADSRVKLWDVRRASG--CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVG--TDNRMRLWNSSNG 277 (408)
T ss_dssp EEEETTSCEEEEETTCSSC--CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTC
T ss_pred EEEcCCCcEEEEECCCCCc--ccccccccccccceeeccccccccCceeEEEEcCCCC-EEEEec--CCCeEEEEECCCC
Confidence 9999999999999986531 22222 56888999999999985 455554 7999999999988
Q ss_pred eEEEEEecC------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEE
Q 040533 254 TCIHSVDTK------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVS 327 (364)
Q Consensus 254 ~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 327 (364)
+........ ..+........+..++++.. ++.|++||+.+++.+..+.+|...|++++|+|++++|++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY------GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp CBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE------TTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred ccceeccccccccccccceeEEecCCCceEEEEec------CCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence 765443221 11222222233334444432 899999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEeeCCCCCcce
Q 040533 328 AAADETLRFWEAFGPSGSGDF 348 (364)
Q Consensus 328 ~~~dg~i~vw~~~~~~~~~~~ 348 (364)
++.||.|++||+.+.+.+...
T Consensus 352 ~~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 352 GSRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp EETTSCEEEEEECC-------
T ss_pred ECCCCeEEEEeCCCCCccCCC
Confidence 999999999999998776543
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.1e-39 Score=300.28 Aligned_cols=270 Identities=20% Similarity=0.272 Sum_probs=225.3
Q ss_pred eecCCCCCceEEEEcCCC-CEEEEEecCCcEEEEecCCc-----ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEE
Q 040533 82 KVTGEDDFPTSISWSQDA-KTLAVGYMASKLQLWDAETS-----KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSII 155 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 155 (364)
.+.+|.+.|++++|+|++ ++|++|+.||+|++|++.+. .....+.+|...|.+++|+| ++++|++|+.||+|+
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELR 455 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEE
Confidence 456999999999999864 79999999999999998763 34567889999999999999 999999999999999
Q ss_pred EEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCC-cEE
Q 040533 156 NHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF-NVL 234 (364)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~ 234 (364)
+||+.++.. ...+.+|...|.+++|+|++++|++++.|++|++||+.............+|...|.+++|+|++. .++
T Consensus 456 vwd~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 534 (694)
T 3dm0_A 456 LWDLAAGVS-TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534 (694)
T ss_dssp EEETTTTEE-EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred EEECCCCcc-eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence 999987764 667889999999999999999999999999999999754321111111246888999999999873 467
Q ss_pred EeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccce
Q 040533 235 ASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI 313 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 313 (364)
++++ .|+.|++||+++++....+.. ...|.+++|+|++++++++.. |+.|++||+.+++.+..+..+ ..|
T Consensus 535 ~s~s--~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~------Dg~i~iwd~~~~~~~~~~~~~-~~v 605 (694)
T 3dm0_A 535 VSAS--WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK------DGVVLLWDLAEGKKLYSLEAN-SVI 605 (694)
T ss_dssp EEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET------TSBCEEEETTTTEEEECCBCS-SCE
T ss_pred EEEe--CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC------CCeEEEEECCCCceEEEecCC-CcE
Confidence 7776 899999999999999888865 477999999999999998854 999999999999998887654 579
Q ss_pred eEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceecc-------------------CCceeeeeeccC
Q 040533 314 LELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSH-------------------LDGLLSLKVSPI 363 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-------------------~~~v~~~~~sp~ 363 (364)
.+++|+|++.+|++++ |+.|++||+.+++.+..+..+ .-.+++++|||.
T Consensus 606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd 673 (694)
T 3dm0_A 606 HALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD 673 (694)
T ss_dssp EEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTT
T ss_pred EEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCC
Confidence 9999999998887765 566999999887665544321 123788999985
No 81
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=9.3e-39 Score=283.56 Aligned_cols=284 Identities=10% Similarity=0.200 Sum_probs=224.1
Q ss_pred CCCcceeecccCCCcc--EEEEEeCCeEEEEECCCCce---------eeeeeecCCC------------CCceEEEEcCC
Q 040533 42 LRNDYYSNMMDWGRNN--ILAIALGLELYLWKQENGEV---------QKLLKVTGED------------DFPTSISWSQD 98 (364)
Q Consensus 42 ~~~~~~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~---------~~~~~~~~~~------------~~v~~~~~s~~ 98 (364)
+...-.+.+++|+|++ +++++.||.|++||+.+++. .....+.+|. ..|++++|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 3444568999999864 66677899999999987652 1244556898 88999999999
Q ss_pred C--CEEEEEecCCcEEEEecCCccee---------------------------------------ee-eecCCCcEEEEE
Q 040533 99 A--KTLAVGYMASKLQLWDAETSKLI---------------------------------------RN-LEGHDKRVATAS 136 (364)
Q Consensus 99 ~--~~l~~~~~dg~i~iw~~~~~~~~---------------------------------------~~-~~~~~~~v~~~~ 136 (364)
+ .+|++++.||.|++||+.++... .. ..+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 79999999999999999765432 12 357999999999
Q ss_pred eecCCCCEEEEeeCCCcEEEEEcccCcceee-------eeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCC-
Q 040533 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTS-------RINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSS- 207 (364)
Q Consensus 137 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~- 207 (364)
|+| ++++|++| .|+.|++||++....... .+..|...|.+++|+|++ ++|++++.||.|++||++....
T Consensus 185 ~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 185 INS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp ECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 999 99999998 799999999985443333 356899999999999998 9999999999999999987542
Q ss_pred CcceEEeccccc------------ceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-CeEEEEEecCCC----------
Q 040533 208 SKCLHRFRDHRA------------AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-GTCIHSVDTKAQ---------- 264 (364)
Q Consensus 208 ~~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~---------- 264 (364)
...+..+..|.. .|.+++|+|++. ++++++ . +.|++||+++ ++++..+..+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRD--Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEE--S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEee--C-CeEEEEeCCCCccccceeecccccccccccccc
Confidence 222566777765 899999999984 566665 5 9999999997 887777776643
Q ss_pred ------eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-------------------------------
Q 040533 265 ------ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ------------------------------- 307 (364)
Q Consensus 265 ------v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~------------------------------- 307 (364)
+..++|+|++++|+++.. |+.|++||+.+++.+. +.
T Consensus 339 ~~~i~~~~~~~~s~~~~~l~s~s~------dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSDSVVMTGSY------NNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVD 411 (447)
T ss_dssp TSGGGCCCCEEECTTSSEEEEECS------TTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGG
T ss_pred ccccccceEEEECCCCCEEEEecc------CCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccccccccc
Confidence 234999999999988854 9999999999887653 11
Q ss_pred --ccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 308 --HQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 308 --~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
.+...|..++|+|++.+||+++.++ +++|.-
T Consensus 412 ~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 412 SLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp GCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2345688999999999999998875 777764
No 82
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-39 Score=304.41 Aligned_cols=304 Identities=11% Similarity=0.104 Sum_probs=234.1
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.|+.|++|+..+.+.... + .|...|.+++|+| +++|++++.|++|+|||+.+++.+..
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~--~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~ 94 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK--L-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTT 94 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE--C-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE--c-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEE
Confidence 37888999864 55667799999999887664322 2 5788999999999 88999999999999999999998888
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee----------eeeecccCcEEEEEEcCC-CCEEEEEeC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT----------SRINAHTAEVCGLKWSNE-GNLLASGGD 193 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~----------~~~~~~~~~v~~~~~~~~-~~~l~~~~~ 193 (364)
+. |...|++++|+| ++++|++|+.||.|++||++++.... ....+|.++|.+++|+|+ +..+++|+.
T Consensus 95 ~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~ 172 (902)
T 2oaj_A 95 VF-VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE 172 (902)
T ss_dssp EE-CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS
T ss_pred Ec-CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeC
Confidence 86 778999999999 99999999999999999998765321 234578899999999995 578999999
Q ss_pred CCeEEEEeCCCCCCCcceEEeccc------------------ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 194 DNLVHVWDHSKMSSSKCLHRFRDH------------------RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 194 d~~i~iwd~~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
|+.| +||++.. +.+..+..| ...|.+++|+|++ .++++++ .|+.|++||++++++
T Consensus 173 dg~v-lWd~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs--~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 173 YVTL-TYSLVEN---EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIH--EDNSLVFWDANSGHM 245 (902)
T ss_dssp SCEE-EEETTTT---EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEE--TTCCEEEEETTTCCE
T ss_pred CCcE-EEECCCC---ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEE--CCCeEEEEECCCCcE
Confidence 9999 9998764 335555444 4779999999998 5667766 899999999999988
Q ss_pred EEEEe-------------------cCCCeEEEEEc----CCc-cceeeeccC----------------------------
Q 040533 256 IHSVD-------------------TKAQICGLEWN----RHH-KEILSGHGF---------------------------- 283 (364)
Q Consensus 256 ~~~~~-------------------~~~~v~~~~~~----~~~-~~l~~~~~~---------------------------- 283 (364)
+.... +...|.+++|+ |++ ..+++|..-
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 325 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK 325 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence 76421 12368999995 443 344444100
Q ss_pred ------------------------------------------CccCCCCeEEEeeCCCCceeee----------------
Q 040533 284 ------------------------------------------SSSGDGQKLCLWKYPHMTKWGE---------------- 305 (364)
Q Consensus 284 ------------------------------------------~~~~~~~~i~i~d~~~~~~~~~---------------- 305 (364)
...+.++.|++||+.++.....
T Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~ 405 (902)
T 2oaj_A 326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT 405 (902)
T ss_dssp HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence 0112357899999876643321
Q ss_pred -------------------------ccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCc--cee---------
Q 040533 306 -------------------------LQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSG--DFV--------- 349 (364)
Q Consensus 306 -------------------------~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~--~~~--------- 349 (364)
+.+|...+..++|+|++++|++|+.||+|++||+.++.... .+.
T Consensus 406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~ 485 (902)
T 2oaj_A 406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNK 485 (902)
T ss_dssp EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC
T ss_pred EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCC
Confidence 23344445566778999999999999999999999875421 121
Q ss_pred ccCCceeeeeeccC
Q 040533 350 SHLDGLLSLKVSPI 363 (364)
Q Consensus 350 ~~~~~v~~~~~sp~ 363 (364)
+|...|++|+|||.
T Consensus 486 ~h~~~V~svafspd 499 (902)
T 2oaj_A 486 AKELAVDKISFAAE 499 (902)
T ss_dssp SSSCCEEEEEEETT
T ss_pred CCCCceeEEEecCC
Confidence 78899999999995
No 83
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-38 Score=275.00 Aligned_cols=251 Identities=19% Similarity=0.327 Sum_probs=213.4
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC--CcceeeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEE
Q 040533 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE--TSKLIRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINH 157 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~ 157 (364)
.+.+|...|++++|+|++++||+|+.||.|+|||+. +++.+..+.+|...|.+++|+| + +++|++++.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEE
Confidence 445899999999999999999999999999999998 6677788899999999999987 5 8999999999999999
Q ss_pred EcccCc-ceeeeeecccCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccC-----
Q 040533 158 DVRVSN-NVTSRINAHTAEVCGLKWSNE--GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY----- 229 (364)
Q Consensus 158 d~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 229 (364)
|+.++. .....+..|...|.+++|+|+ +.+|++++.|+.|++||++.... .....+..|...|.+++|+|.
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-CCEEEEECCTTCEEEEEECCCC----
T ss_pred EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-eeeEEecCCCCceEEEEEcCcccccc
Confidence 999775 235667789999999999999 99999999999999999987643 334566788999999999994
Q ss_pred -------CCcEEEeecCCCCCeEEEEECCCCe----EEEEEe-cCCCeEEEEEcCC---ccceeeeccCCccCCCCeEEE
Q 040533 230 -------QFNVLASGGGTQDGCIKIWNVQKGT----CIHSVD-TKAQICGLEWNRH---HKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 230 -------~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~-~~~~v~~~~~~~~---~~~l~~~~~~~~~~~~~~i~i 294 (364)
...++++++ .|+.|++||++++. ....+. +...|.+++|+|+ +.+++++.. |+.|++
T Consensus 164 ~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~------dg~i~i 235 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ------DRTCII 235 (379)
T ss_dssp ------CTTCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET------TSCEEE
T ss_pred ccccCCCCCCEEEEEe--CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC------CCEEEE
Confidence 235666665 89999999998764 334444 3577999999999 899998854 999999
Q ss_pred eeCCCCc-----eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 295 WKYPHMT-----KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 295 ~d~~~~~-----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
||+.++. .+.....|...|++++|+|+|++|++++.||.|++|++...
T Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 236 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred EeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 9998864 22233458889999999999999999999999999999854
No 84
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.7e-38 Score=315.02 Aligned_cols=302 Identities=14% Similarity=0.189 Sum_probs=263.7
Q ss_pred eeecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 47 YSNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 47 ~~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
.+.+++|+|+ ..++++.++.+.+||..++....... .+|...|.+++|+|+++++++|+.||.|++||+.++..+..+
T Consensus 800 ~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 878 (1249)
T 3sfz_A 800 IVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH-TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 878 (1249)
T ss_dssp CBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEE-CSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEc-CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec
Confidence 4778899986 47777779999999999988655443 388999999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce------------------------------------eeee
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV------------------------------------TSRI 169 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------------------------------------~~~~ 169 (364)
.+|...|.+++|+| ++..|++++.||.|++||+...... ....
T Consensus 879 ~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 957 (1249)
T ss_dssp CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEE
T ss_pred CCCccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEE
Confidence 99999999999999 9999999999999999997642100 0011
Q ss_pred ecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEE
Q 040533 170 NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWN 249 (364)
Q Consensus 170 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d 249 (364)
..+...+.+++|+|+++++++|+.+|.|++||+... .....+.+|...|.+++|+|+++.+ ++++ .||.|++||
T Consensus 958 ~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~--~dg~i~vwd 1031 (1249)
T 3sfz_A 958 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN---RVFSSGVGHKKAVRHIQFTADGKTL-ISSS--EDSVIQVWN 1031 (1249)
T ss_dssp EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT---SCEEECCCCSSCCCCEEECSSSSCE-EEEC--SSSBEEEEE
T ss_pred EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC---ceeeecccCCCceEEEEECCCCCEE-EEEc--CCCEEEEEE
Confidence 123467999999999999999999999999998765 4477788999999999999999654 5554 799999999
Q ss_pred CCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEe
Q 040533 250 VQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 329 (364)
+.+++......+...+.++.|+|++..+..+ .|+.|++||+.+++.+..+.+|...|++++|+|++++|++++
T Consensus 1032 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-------~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s 1104 (1249)
T 3sfz_A 1032 WQTGDYVFLQAHQETVKDFRLLQDSRLLSWS-------FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS 1104 (1249)
T ss_dssp TTTTEEECCBCCSSCEEEEEECSSSEEEEEE-------SSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEEC
T ss_pred CCCCceEEEecCCCcEEEEEEcCCCcEEEEE-------CCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEc
Confidence 9999888766677889999999988765443 299999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 330 ADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 330 ~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.||.|++||+.+++....+.+|.+.|++++|||.
T Consensus 1105 ~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~d 1138 (1249)
T 3sfz_A 1105 ADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138 (1249)
T ss_dssp CSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSS
T ss_pred CCCcEEEEECCCcceeeeeccCCCcEEEEEECCC
Confidence 9999999999999999999999999999999995
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.6e-39 Score=280.73 Aligned_cols=264 Identities=16% Similarity=0.232 Sum_probs=222.5
Q ss_pred cCCCCCceEEEEcCC----CCEEEEEecCCcEEEEecCCcceeeeeec-----CCCcEEEEEeecCC----CCEEEEeeC
Q 040533 84 TGEDDFPTSISWSQD----AKTLAVGYMASKLQLWDAETSKLIRNLEG-----HDKRVATASWNHWN----GHILTSGSQ 150 (364)
Q Consensus 84 ~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~~~----~~~l~~~~~ 150 (364)
.+|...|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+| + +.+|++|+.
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY-DSNTSHPLLAVAGS 93 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE-CTTTCCEEEEEEET
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc-CCCCCCCEEEEecC
Confidence 389999999999984 45677777788999999998887766654 557899999999 6 679999999
Q ss_pred CCcEEEEEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEe---cccccceeEEEE
Q 040533 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRF---RDHRAAVKALAW 226 (364)
Q Consensus 151 dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~ 226 (364)
||.|++||+.+++. ...+.+|...|.+++|+| ++++|++++.||.|++||++... .+..+ ..|...|.+++|
T Consensus 94 dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 94 RGIIRIINPITMQC-IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT---LVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp TCEEEEECTTTCCE-EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE---EEEEECSTTSCSSCEEEEEE
T ss_pred CCEEEEEEchhceE-eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe---EEEEecccccccCceeEEEE
Confidence 99999999987764 667788999999999999 89999999999999999987653 45555 679999999999
Q ss_pred ccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-----------------------------cCCCeEEEEEcCCccce
Q 040533 227 CPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-----------------------------TKAQICGLEWNRHHKEI 277 (364)
Q Consensus 227 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-----------------------------~~~~v~~~~~~~~~~~l 277 (364)
+|++. .+++++ .|+.|++||+++++....+. +...|.+++|+ +.++
T Consensus 170 ~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 244 (366)
T 3k26_A 170 DLLGE-KIMSCG--MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLI 244 (366)
T ss_dssp CTTSS-EEEEEE--TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEE
T ss_pred CCCCC-EEEEec--CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEE
Confidence 99885 555655 79999999998765443222 55779999998 6677
Q ss_pred eeeccCCccCCCCeEEEeeCCCCce--------------eeeccccccceeEEeecCC--CCEEEEEeCCCcEEEEEeeC
Q 040533 278 LSGHGFSSSGDGQKLCLWKYPHMTK--------------WGELQHQTSRILELSQSPD--GLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~~~~~--------------~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~vw~~~~ 341 (364)
+++.. |+.|++||+.+++. +..+..|...|++++|+|+ +++|++|+.||.|++||+.+
T Consensus 245 ~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 245 LSKSC------ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp EEECS------SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred EEEec------CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence 77744 99999999987754 6777889999999999999 99999999999999999998
Q ss_pred CCCCc----ceecc--CCceeeeeeccC
Q 040533 342 PSGSG----DFVSH--LDGLLSLKVSPI 363 (364)
Q Consensus 342 ~~~~~----~~~~~--~~~v~~~~~sp~ 363 (364)
++... .+.+| ...|++++|+|.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 346 (366)
T 3k26_A 319 EDPHKAKCTTLTHHKCGAAIRQTSFSRD 346 (366)
T ss_dssp SSGGGCEEEEECCTTCCSCEEEEEECTT
T ss_pred CCCccccceEEcccccCCceEEEEeCCC
Confidence 87554 56666 789999999985
No 86
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.6e-39 Score=277.35 Aligned_cols=281 Identities=15% Similarity=0.127 Sum_probs=211.0
Q ss_pred ceeecccCCCcc-EEEEEe--------CCeEEEEECCCCce--------eeeeeecCCCCCceEEEEcCCCCEEEEEe--
Q 040533 46 YYSNMMDWGRNN-ILAIAL--------GLELYLWKQENGEV--------QKLLKVTGEDDFPTSISWSQDAKTLAVGY-- 106 (364)
Q Consensus 46 ~~~~~~~~~~~~-~~~~~~--------~~~i~iw~~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 106 (364)
+.+.+++|+|++ +|+++. ++.|++|++..+.. .....+.+|.+.|.+++++ ++.+++|.
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 448889999975 444432 23699999876532 1223466888999988775 55676654
Q ss_pred ---------cCCcEEEEecCCcceeee---------eecCCCcEEEEEeecCCCCEEEE--eeCCCcEEEEEcccCccee
Q 040533 107 ---------MASKLQLWDAETSKLIRN---------LEGHDKRVATASWNHWNGHILTS--GSQDKSIINHDVRVSNNVT 166 (364)
Q Consensus 107 ---------~dg~i~iw~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~~~d~~~~~~~~ 166 (364)
.|+.+++|++.+...... ...+...+.+++|+| +++++++ ++.|++|++||+++... .
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~-~ 170 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTE-K 170 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEE-E
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcE-E
Confidence 467899999876532211 122445689999999 9998764 45789999999998765 3
Q ss_pred eeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC---
Q 040533 167 SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG--- 243 (364)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--- 243 (364)
..+ .|...|.+++|+|+|+++++++.++ +.+|+..+... ........|...|.+++|+|++..+++.+ .|+
T Consensus 171 ~~~-~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~-~~~~~~~~~~~~v~~v~fspdg~~l~~~s---~d~~~~ 244 (365)
T 4h5i_A 171 FEI-ETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSC-IARKTDFDKNWSLSKINFIADDTVLIAAS---LKKGKG 244 (365)
T ss_dssp EEE-ECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCE-EEEECCCCTTEEEEEEEEEETTEEEEEEE---ESSSCC
T ss_pred EEe-CCCCceEEEEEccCCceEEecccee-EEEEEeccCcc-eeeeecCCCCCCEEEEEEcCCCCEEEEEe---cCCcce
Confidence 444 4778899999999999999998655 66666554322 11233456888999999999996555443 354
Q ss_pred -eEEEEECCCCeEE----EEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec-cccccceeEE
Q 040533 244 -CIKIWNVQKGTCI----HSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL-QHQTSRILEL 316 (364)
Q Consensus 244 -~i~i~d~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~i 316 (364)
.+++|++...... ..+. +...|++++|+|+|++|++|.. |+.|+|||+.+++++..+ .+|...|+++
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~------D~~V~iwd~~~~~~~~~~~~gH~~~V~~v 318 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN------DNSIALVKLKDLSMSKIFKQAHSFAITEV 318 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET------TSCEEEEETTTTEEEEEETTSSSSCEEEE
T ss_pred eEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC------CCEEEEEECCCCcEEEEecCcccCCEEEE
Confidence 6889998776542 2333 3467999999999999999854 999999999999999874 7899999999
Q ss_pred eecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 317 SQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 317 ~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
+|+|||++||+||.|++|+||++...
T Consensus 319 ~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 319 TISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999999654
No 87
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.7e-39 Score=287.06 Aligned_cols=268 Identities=16% Similarity=0.193 Sum_probs=218.8
Q ss_pred ecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCccee--eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 83 VTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETSKLI--RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
..+|...|+|++|+| ++++||+|+.||.|+|||+.+++.. ..+.+|.+.|++++|+|.++++|++|+.||+|++||+
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 347888999999999 5679999999999999999877544 4456799999999999977899999999999999999
Q ss_pred ccCcceeeeee--cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEee
Q 040533 160 RVSNNVTSRIN--AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 160 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
++... ..... .+...+.+++|+|++++|++|+.||.|++||++. +.+..+.+|...|.+++|+|++..+++++
T Consensus 195 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~----~~~~~~~~h~~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 195 KGNIL-RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG----KELWNLRMHKKKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp TSCEE-EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS----CBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred cCCce-eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc----ceeEEEecccceEEeeeecCCCceEEEEe
Confidence 75432 22222 2345678999999999999999999999999864 34667788999999999999998899988
Q ss_pred cCCCCCeEEEEECCCCeEEEEE----ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccc--
Q 040533 238 GGTQDGCIKIWNVQKGTCIHSV----DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS-- 311 (364)
Q Consensus 238 ~g~~d~~i~i~d~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-- 311 (364)
+ .|+.|++||+++.+....+ .+...|.+++|+|+|.+|+++.. |+.|++||+.+++....+..|..
T Consensus 270 s--~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~------D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 270 S--VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ------KSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp E--TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES------SSCEEEEESSSSSSEEEECCCCCCC
T ss_pred c--CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC------CCEEEEEECCCCccceEEecccccc
Confidence 7 8999999999886544332 34578999999999999998854 99999999999988877765542
Q ss_pred ----ceeEEeecCCCCEEEEEe------------CCCcEEEEEeeCCCCCccee-ccCCceeee-eeccC
Q 040533 312 ----RILELSQSPDGLTVVSAA------------ADETLRFWEAFGPSGSGDFV-SHLDGLLSL-KVSPI 363 (364)
Q Consensus 312 ----~i~~i~~~~~~~~l~~~~------------~dg~i~vw~~~~~~~~~~~~-~~~~~v~~~-~~sp~ 363 (364)
.+....|+|++.++++++ .++.|++||..+++.+..+. +|...|.++ +|||.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspd 411 (435)
T 4e54_B 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPM 411 (435)
T ss_dssp CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTT
T ss_pred cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCC
Confidence 234567778777777664 33579999999998877765 678889988 69985
No 88
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-40 Score=293.28 Aligned_cols=275 Identities=8% Similarity=0.079 Sum_probs=208.1
Q ss_pred eecccCCCc-------c-EEEEEeCCeEEEEECCCCcee---------eeeeecCCCCCceEEEEcCCCCEEEEEecCCc
Q 040533 48 SNMMDWGRN-------N-ILAIALGLELYLWKQENGEVQ---------KLLKVTGEDDFPTSISWSQDAKTLAVGYMASK 110 (364)
Q Consensus 48 ~~~~~~~~~-------~-~~~~~~~~~i~iw~~~~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 110 (364)
+..++|+|+ + +++++.|+.|++||+.+++.. ....+.+|...|++++|+++ ..|++|+.||+
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~Dgt 288 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGF 288 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSE
T ss_pred EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCE
Confidence 677889875 3 555778999999999876421 12356689999999999986 48999999999
Q ss_pred EEEEecCCcc-eeeeeecCCCcEEEE--EeecCCC-CEEEEeeCCCcEEEEEcccCcceeeeeecccC--cEEEEEEcCC
Q 040533 111 LQLWDAETSK-LIRNLEGHDKRVATA--SWNHWNG-HILTSGSQDKSIINHDVRVSNNVTSRINAHTA--EVCGLKWSNE 184 (364)
Q Consensus 111 i~iw~~~~~~-~~~~~~~~~~~v~~~--~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~v~~~~~~~~ 184 (364)
|++||++++. ....+.+|...|.++ +|+| ++ .+|++|+.|++|++||+++.+. ...+.+|.. .|.+++|+|+
T Consensus 289 V~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~v~fsp~ 366 (524)
T 2j04_B 289 VAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVPVVYCPQ 366 (524)
T ss_dssp EEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHH-HCEEEEECSCCSCCCEEEETT
T ss_pred EEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCc-ccccccccccCcccceEeCCC
Confidence 9999999774 445688999999999 5677 76 8999999999999999987664 344555543 5789999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe----
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD---- 260 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~---- 260 (364)
++.+++++.|++|++||++... .+..+.+|.+.|++++|+|+++. +++|+ .|++|++||+..+ .+....
T Consensus 367 ~~~l~s~~~d~tv~lwd~~~~~---~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs--~Dgtv~lwd~~~~-~~~~~~~~~~ 439 (524)
T 2j04_B 367 IYSYIYSDGASSLRAVPSRAAF---AVHPLVSRETTITAIGVSRLHPM-VLAGS--ADGSLIITNAARR-LLHGIKNSSA 439 (524)
T ss_dssp TTEEEEECSSSEEEEEETTCTT---CCEEEEECSSCEEEEECCSSCCB-CEEEE--TTTEEECCBSCSS-TTTCC-----
T ss_pred cCeEEEeCCCCcEEEEECcccc---cceeeecCCCceEEEEeCCCCCe-EEEEE--CCCEEEEEechHh-hccccccCcc
Confidence 9999999999999999988753 36677889999999999999964 55665 8999999998654 221111
Q ss_pred --cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC-CCceeeeccccccceeEEeecCCCC---EEEEEeCCCcE
Q 040533 261 --TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP-HMTKWGELQHQTSRILELSQSPDGL---TVVSAAADETL 334 (364)
Q Consensus 261 --~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~~---~l~~~~~dg~i 334 (364)
....+..++|+|++..+.. .....+|+.. ++..+..+.+|...|.+++|+|+++ .||+|+.||.|
T Consensus 440 ~~~~~~v~~v~~sp~g~~~~~---------~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~v 510 (524)
T 2j04_B 440 TQKSLRLWKWDYSIKDDKYRI---------DSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLL 510 (524)
T ss_dssp -CCCCEEEECBCCSSSCEEEE---------CCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEE
T ss_pred ceeeeEEEEeccCCCCCeEEc---------cCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceE
Confidence 1124678999999885432 2233445443 5677788899999999999999964 99999999999
Q ss_pred EEEEeeC
Q 040533 335 RFWEAFG 341 (364)
Q Consensus 335 ~vw~~~~ 341 (364)
+||++..
T Consensus 511 rlw~l~~ 517 (524)
T 2j04_B 511 TLEYLSL 517 (524)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 9999764
No 89
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-39 Score=283.79 Aligned_cols=276 Identities=17% Similarity=0.227 Sum_probs=221.5
Q ss_pred EEECCCCceeeeeee-cCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCC---cc---eeeeeecCCCcEEEEEeecC
Q 040533 69 LWKQENGEVQKLLKV-TGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAET---SK---LIRNLEGHDKRVATASWNHW 140 (364)
Q Consensus 69 iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~---~~---~~~~~~~~~~~v~~~~~~~~ 140 (364)
.|+.. ++. +..+ .+|.+.|++++|+| ++++|++|+.||.|+|||+.+ +. ....+ .|...|.+++|+|
T Consensus 47 ~w~~~-g~~--~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~- 121 (437)
T 3gre_A 47 MGNLR-GKL--IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIP- 121 (437)
T ss_dssp GGGCC-CCE--EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECT-
T ss_pred ccccc-ceE--EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeC-
Confidence 37743 333 3344 58999999999999 999999999999999999876 43 22233 4899999999999
Q ss_pred CCCEEEEeeCCCcEEEEEcc---cCcceeeeeec------------ccCcEEEEE--EcCCCCEEEEEeCCCeEEEEeCC
Q 040533 141 NGHILTSGSQDKSIINHDVR---VSNNVTSRINA------------HTAEVCGLK--WSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~---~~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
++++|++++.||.|++||++ .+.. ...... +...+.++. +++++.+|++++.|+.|++||++
T Consensus 122 ~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 200 (437)
T 3gre_A 122 NFDAFAVSSKDGQIIVLKVNHYQQESE-VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR 200 (437)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEETTE-EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT
T ss_pred CCCEEEEEeCCCEEEEEEeccccCCce-eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999995 3322 222221 445666666 56789999999999999999987
Q ss_pred CCCCCcceEEecc--cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe--cCCCeEEEEEc----CCcc
Q 040533 204 KMSSSKCLHRFRD--HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD--TKAQICGLEWN----RHHK 275 (364)
Q Consensus 204 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~----~~~~ 275 (364)
.. +.+..+.. |...|.+++|+|++ .++++++ .||.|++||+++++++..+. +...|.+++|+ |++.
T Consensus 201 ~~---~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~ 274 (437)
T 3gre_A 201 TL---ERLQIIENSPRHGAVSSICIDEEC-CVLILGT--TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSV 274 (437)
T ss_dssp TC---CEEEEEECCGGGCCEEEEEECTTS-CEEEEEE--TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEE
T ss_pred CC---eeeEEEccCCCCCceEEEEECCCC-CEEEEEc--CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCcc
Confidence 74 44777777 88999999999998 5666665 89999999999999998874 45679999555 5688
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeeeccc--------------------------cccceeEEeecCCCCEEEEEe
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH--------------------------QTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--------------------------~~~~i~~i~~~~~~~~l~~~~ 329 (364)
+++++.. |+.|++||+.+++.+..+.+ |...|++++|+ ++++|++|+
T Consensus 275 ~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~ 347 (437)
T 3gre_A 275 IVVGGSS------KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE 347 (437)
T ss_dssp EEEEEST------TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG
T ss_pred EEEEEcC------CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC
Confidence 8888754 99999999999887766653 55568888888 778999999
Q ss_pred CCCcEEEEEeeCCCCCcceec-------------------------------------cCCceeeeeeccC
Q 040533 330 ADETLRFWEAFGPSGSGDFVS-------------------------------------HLDGLLSLKVSPI 363 (364)
Q Consensus 330 ~dg~i~vw~~~~~~~~~~~~~-------------------------------------~~~~v~~~~~sp~ 363 (364)
.||.|++||+.+++....+.+ |.+.|++++|+|.
T Consensus 348 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~ 418 (437)
T 3gre_A 348 ATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEV 418 (437)
T ss_dssp GGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEES
T ss_pred CCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeecc
Confidence 999999999999887776665 7889999999875
No 90
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.7e-39 Score=273.41 Aligned_cols=260 Identities=10% Similarity=0.123 Sum_probs=222.2
Q ss_pred cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc---eeeeeecCCCcEEEEEeecCCCC-EEEEeeCCCcEEEEEc
Q 040533 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK---LIRNLEGHDKRVATASWNHWNGH-ILTSGSQDKSIINHDV 159 (364)
Q Consensus 84 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~ 159 (364)
.+|.+.|++++|+|++++|++|+.||.|++|++.+++ ....+..|...|.+++|+| +++ +|++|+.||.|++||+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECS
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEe
Confidence 4899999999999999999999999999999998877 3455567999999999999 899 9999999999999999
Q ss_pred -ccCcceeeeeec--ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC------CcceEEecccccceeEEEEccCC
Q 040533 160 -RVSNNVTSRINA--HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS------SKCLHRFRDHRAAVKALAWCPYQ 230 (364)
Q Consensus 160 -~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~ 230 (364)
.++. ...+.. |...|.+++|+| ++++++++.|+.|++||++.... .+++..+. |...|.+++|+|++
T Consensus 87 ~~~~~--~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 87 IGSPS--FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR 162 (342)
T ss_dssp SSSSS--EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE
T ss_pred ccCCc--eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc
Confidence 7665 356677 999999999999 99999999999999999875100 12244444 78899999999976
Q ss_pred CcEEEeecCCCCCeEEEEECCC-CeEE---EEEecCCCeEEEEEcC-CccceeeeccCCccCCCCeEEEeeCCCC-----
Q 040533 231 FNVLASGGGTQDGCIKIWNVQK-GTCI---HSVDTKAQICGLEWNR-HHKEILSGHGFSSSGDGQKLCLWKYPHM----- 300 (364)
Q Consensus 231 ~~~~~~~~g~~d~~i~i~d~~~-~~~~---~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~i~i~d~~~~----- 300 (364)
+++++ .|+.|++||+++ +... ....+...+.+++|+| ++++++++.. ++.|++|++...
T Consensus 163 ---l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~------dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 163 ---LIVGM--NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI------DGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp ---EEEEE--STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET------TSEEEEEECCTTCCSTT
T ss_pred ---EEEEe--CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec------CCcEEEEEEcCCCcccc
Confidence 55554 799999999988 5432 2223457899999999 9999998854 999999999887
Q ss_pred -ceeeecccccc---------ceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceecc-CCceeeee
Q 040533 301 -TKWGELQHQTS---------RILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSH-LDGLLSLK 359 (364)
Q Consensus 301 -~~~~~~~~~~~---------~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~v~~~~ 359 (364)
+....+..|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+.+| .++|.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 301 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec
Confidence 77778887755 9999999999999999999999999999999988888888 99999988
No 91
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=5.9e-38 Score=276.77 Aligned_cols=252 Identities=23% Similarity=0.394 Sum_probs=217.6
Q ss_pred eecCCCCCceEEEEcCC-CCEEEEEecCCcEEEEecCC----------cceeeeeecCCCcEEEEEeecCCCC-EEEEee
Q 040533 82 KVTGEDDFPTSISWSQD-AKTLAVGYMASKLQLWDAET----------SKLIRNLEGHDKRVATASWNHWNGH-ILTSGS 149 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~ 149 (364)
....|.+.|++++|+|+ +.+||+|+.+|.|++|++.+ .+....+.+|...|.+++|+| ++. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP-NLNGYLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT-TSTTEEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC-CCCCeEEEEe
Confidence 34488999999999997 68999999999999999986 567788889999999999999 666 999999
Q ss_pred CCCcEEEEEcccCcc------eeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccccee
Q 040533 150 QDKSIINHDVRVSNN------VTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222 (364)
Q Consensus 150 ~dg~i~~~d~~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 222 (364)
.||.|++||+..... ....+..|...|.+++|+| ++.+|++++.|+.|++||++.....+.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987332 1345668999999999999 778999999999999999997654456777888999999
Q ss_pred EEEEccCCCcEEEeecCCCCCeEEEEECCC-CeEEEEEe-cCCCeEEEEEcCCccc-eeeeccCCccCCCCeEEEeeCCC
Q 040533 223 ALAWCPYQFNVLASGGGTQDGCIKIWNVQK-GTCIHSVD-TKAQICGLEWNRHHKE-ILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
+++|+|++.+++++++ .||.|++||+++ +.++..+. +...|.+++|+|+++. ++++. .|+.|++||+..
T Consensus 282 ~i~~~p~~~~~l~tg~--~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~------~d~~i~iwd~~~ 353 (430)
T 2xyi_A 282 CLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG------TDRRLHVWDLSK 353 (430)
T ss_dssp EEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE------TTSCCEEEEGGG
T ss_pred EEEeCCCCCCEEEEEe--CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe------CCCcEEEEeCCC
Confidence 9999999988898887 899999999998 55666665 5578999999999975 55553 399999999977
Q ss_pred --------------CceeeeccccccceeEEeecCCCC-EEEEEeCCCcEEEEEeeCC
Q 040533 300 --------------MTKWGELQHQTSRILELSQSPDGL-TVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 300 --------------~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~vw~~~~~ 342 (364)
.+.+..+.+|...|++++|+|+++ +|++++.||.|++|++...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 356777788999999999999999 8999999999999998753
No 92
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.5e-37 Score=266.02 Aligned_cols=273 Identities=12% Similarity=0.115 Sum_probs=228.3
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCc-eeeeeeecCCCCCceEEEEcCCCC-EEEEEecCCcEEEEec-CCcce
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGE-VQKLLKVTGEDDFPTSISWSQDAK-TLAVGYMASKLQLWDA-ETSKL 121 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~-~~~~~ 121 (364)
.+.+++|+|++ +++++.|+.|++|++.+++ ........+|...|.+++|+|+++ +|++|+.||.|++||+ .+++.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 92 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF 92 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce
Confidence 47888888853 6777789999999998876 112233448899999999999999 9999999999999999 77754
Q ss_pred eeeeec--CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc---------CcceeeeeecccCcEEEEEEcCCCCEEEE
Q 040533 122 IRNLEG--HDKRVATASWNHWNGHILTSGSQDKSIINHDVRV---------SNNVTSRINAHTAEVCGLKWSNEGNLLAS 190 (364)
Q Consensus 122 ~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 190 (364)
..+.. |...|.+++|+| +++|++++.|+.|++||+++ ... ...+. |...|.+++|+|++ +++
T Consensus 93 -~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~--l~~ 165 (342)
T 1yfq_A 93 -QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-SNNTK-VKNKIFTMDTNSSR--LIV 165 (342)
T ss_dssp -EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESC-SSSSS-SCCCEEEEEECSSE--EEE
T ss_pred -EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCe-eeEEe-eCCceEEEEecCCc--EEE
Confidence 67778 999999999998 88999999999999999986 443 33443 88999999999987 999
Q ss_pred EeCCCeEEEEeCCC-CCCCcceEEecccccceeEEEEcc-CCCcEEEeecCCCCCeEEEEECCCC------eEEEEEecC
Q 040533 191 GGDDNLVHVWDHSK-MSSSKCLHRFRDHRAAVKALAWCP-YQFNVLASGGGTQDGCIKIWNVQKG------TCIHSVDTK 262 (364)
Q Consensus 191 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g~~d~~i~i~d~~~~------~~~~~~~~~ 262 (364)
++.|+.|++||++. ... ........|...+.+++|+| ++. ++++++ .||.|++|++... +....+..+
T Consensus 166 ~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 166 GMNNSQVQWFRLPLCEDD-NGTIEESGLKYQIRDVALLPKEQE-GYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EESTTEEEEEESSCCTTC-CCEEEECSCSSCEEEEEECSGGGC-EEEEEE--TTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred EeCCCeEEEEECCccccc-cceeeecCCCCceeEEEECCCCCC-EEEEEe--cCCcEEEEEEcCCCcccccccceeeecc
Confidence 99999999999987 432 22334456788999999999 884 556655 7999999999876 666666544
Q ss_pred ----------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc-ccceeEEeecCCCCEEEEEeCC
Q 040533 263 ----------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-TSRILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 263 ----------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d 331 (364)
..+.+++|+|++++++++.. |+.|++||+.+++.+..+..| ...|.+++ |++++|++++.|
T Consensus 242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~D 313 (342)
T 1yfq_A 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGS------DGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSD 313 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEET------TSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred cccccccccceeEEEEEEcCCCCEEEEecC------CceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecC
Confidence 28999999999999998854 999999999999999999998 99999999 999999999999
Q ss_pred Cc-EEEEE
Q 040533 332 ET-LRFWE 338 (364)
Q Consensus 332 g~-i~vw~ 338 (364)
|. .+.+.
T Consensus 314 g~~~~~~~ 321 (342)
T 1yfq_A 314 DTFKTNAA 321 (342)
T ss_dssp THHHHCSS
T ss_pred Cccccccc
Confidence 98 55554
No 93
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.6e-37 Score=258.36 Aligned_cols=243 Identities=19% Similarity=0.315 Sum_probs=200.2
Q ss_pred eecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC--CCEEEEEecCCcEEEEecCCcc--e
Q 040533 48 SNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSK--L 121 (364)
Q Consensus 48 ~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~--~ 121 (364)
+.+++|+++ .+++++.|+.|++||+.++.......+.+|.+.|.+++|+|+ +++|++|+.||+|+|||+++++ .
T Consensus 12 V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~ 91 (297)
T 2pm7_B 12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ 91 (297)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE
Confidence 667777774 477788899999999986544445667799999999999874 8999999999999999998874 5
Q ss_pred eeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccCcc-eeeeeecccCcEEEEEEcCC-------------C
Q 040533 122 IRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINHDVRVSNN-VTSRINAHTAEVCGLKWSNE-------------G 185 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~-------------~ 185 (364)
+..+..|...|.+++|+| + +.+|++++.|+.|++||++.... ....+.+|...|.+++|+|+ +
T Consensus 92 ~~~~~~h~~~v~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~ 170 (297)
T 2pm7_B 92 IAVHAVHSASVNSVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 170 (297)
T ss_dssp CEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------C
T ss_pred EEEeecCCCceeEEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCc
Confidence 566778999999999999 5 78999999999999999987642 24567789999999999996 5
Q ss_pred CEEEEEeCCCeEEEEeCCCCCC-CcceEEecccccceeEEEEccCC--CcEEEeecCCCCCeEEEEECCCCe---EEEEE
Q 040533 186 NLLASGGDDNLVHVWDHSKMSS-SKCLHRFRDHRAAVKALAWCPYQ--FNVLASGGGTQDGCIKIWNVQKGT---CIHSV 259 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~ 259 (364)
++|++|+.|+.|++||++.... ......+.+|...|.+++|+|++ ..++++++ .|++|++||+++.. ....+
T Consensus 171 ~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s--~D~~v~iWd~~~~~~~~~~~~~ 248 (297)
T 2pm7_B 171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS--QDRTCIIWTQDNEQGPWKKTLL 248 (297)
T ss_dssp CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCEEEES
T ss_pred ceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE--CCCcEEEEEeCCCCCccceeee
Confidence 7999999999999999876432 12456788999999999999986 46788876 89999999998743 12222
Q ss_pred ---ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC
Q 040533 260 ---DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 260 ---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
.+...+.+++|+|++++|+++.. |+.|++|+...
T Consensus 249 ~~~~~~~~v~~~~~s~~g~~las~~~------D~~v~lw~~~~ 285 (297)
T 2pm7_B 249 KEEKFPDVLWRASWSLSGNVLALSGG------DNKVTLWKENL 285 (297)
T ss_dssp SSSCCSSCEEEEEECSSSCCEEEEET------TSCEEEEEECT
T ss_pred ecccCCCcEEEEEECCCCCEEEEEcC------CCcEEEEEECC
Confidence 23467999999999999998854 99999999763
No 94
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1e-36 Score=270.32 Aligned_cols=269 Identities=21% Similarity=0.382 Sum_probs=235.9
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
+.+++|+++.+++++.|+.|++||+.+++.. ..+.+|...|.+++|+ ++.+++|+.||.|++||+.+++.+..+.+
T Consensus 162 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 237 (445)
T 2ovr_B 162 VWSSQMRDNIIISGSTDRTLKVWNAETGECI--HTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMG 237 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEEC
T ss_pred EEEEEecCCEEEEEeCCCeEEEEECCcCcEE--EEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcC
Confidence 5667777777888999999999999998764 4455899999999995 57899999999999999999999999999
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS 207 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 207 (364)
|...|.+++| +++++++|+.||.|++||++++.. ...+.+|...|.+++| ++.++++++.|+.|++||+++.
T Consensus 238 ~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-- 309 (445)
T 2ovr_B 238 HVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETC-LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-- 309 (445)
T ss_dssp CSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEE-EEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC--
T ss_pred CcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcE-eEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC--
Confidence 9999999999 788999999999999999987764 6677889999999999 7889999999999999998765
Q ss_pred CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe----cCCCeEEEEEcCCccceeeeccC
Q 040533 208 SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD----TKAQICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 208 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~ 283 (364)
+.+..+.+|...+.++.+++ .++++++ .||.|++||+++++.+..+. +...|.+++|+ +.+++++..
T Consensus 310 -~~~~~~~~~~~~v~~~~~~~---~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~- 380 (445)
T 2ovr_B 310 -NCIHTLTGHQSLTSGMELKD---NILVSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSD- 380 (445)
T ss_dssp -CEEEEECCCCSCEEEEEEET---TEEEEEE--TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEET-
T ss_pred -CEEEEEcCCcccEEEEEEeC---CEEEEEe--CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeC-
Confidence 45788888999999988864 4667765 89999999999999999887 44679999996 567887754
Q ss_pred CccCCCCeEEEeeCCCCceeeec-----cccccceeEEeecCCCCEEEEEeCCCc----EEEEEeeCC
Q 040533 284 SSSGDGQKLCLWKYPHMTKWGEL-----QHQTSRILELSQSPDGLTVVSAAADET----LRFWEAFGP 342 (364)
Q Consensus 284 ~~~~~~~~i~i~d~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~l~~~~~dg~----i~vw~~~~~ 342 (364)
||.|++||+.+++.+..+ ..|.+.|.+++|+|++.+|++|+.||+ |.+||+...
T Consensus 381 -----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 381 -----DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp -----TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred -----CCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 999999999999998887 468889999999999999999999998 999998764
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.3e-38 Score=267.87 Aligned_cols=243 Identities=23% Similarity=0.378 Sum_probs=201.3
Q ss_pred eeecccCCCc--cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC--CCCEEEEEecCCcEEEEecCCcc--
Q 040533 47 YSNMMDWGRN--NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ--DAKTLAVGYMASKLQLWDAETSK-- 120 (364)
Q Consensus 47 ~~~~~~~~~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~-- 120 (364)
.+.+++|+++ .+++++.|+.|++||+.+++......+.+|.+.|.+++|+| ++++|++|+.|++|++||+++++
T Consensus 15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~ 94 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE 94 (316)
T ss_dssp CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC
T ss_pred eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce
Confidence 3777888875 36778889999999998876555667779999999999986 48999999999999999998873
Q ss_pred eeeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccCcc--eeeeeecccCcEEEEEEcCC------------
Q 040533 121 LIRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINHDVRVSNN--VTSRINAHTAEVCGLKWSNE------------ 184 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~------------ 184 (364)
....+.+|...|.+++|+| + +.+|++|+.|+.|++||++.... ....+.+|...|.+++|+|+
T Consensus 95 ~~~~~~~h~~~V~~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 173 (316)
T 3bg1_A 95 KSHEHAGHDSSVNSVCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSG 173 (316)
T ss_dssp EEEEECCCSSCCCEEEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCS
T ss_pred EEEEccCCCCceEEEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccc
Confidence 5667788999999999999 5 78999999999999999986542 23456689999999999997
Q ss_pred -----CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCC---CcEEEeecCCCCCeEEEEECCCC---
Q 040533 185 -----GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQ---FNVLASGGGTQDGCIKIWNVQKG--- 253 (364)
Q Consensus 185 -----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~g~~d~~i~i~d~~~~--- 253 (364)
+++|++|+.|+.|++||++.....+.+..+.+|...|.+++|+|++ ..++++++ .|++|++||+.+.
T Consensus 174 ~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s--~D~~v~iw~~~~~~~~ 251 (316)
T 3bg1_A 174 QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS--QDGRVFIWTCDDASSN 251 (316)
T ss_dssp CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE--TTCEEEEEECSSTTCC
T ss_pred cCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc--CCCeEEEEEccCcccc
Confidence 4689999999999999986543334567788999999999999986 35778876 8999999999762
Q ss_pred e-EEEE-EecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 254 T-CIHS-VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 254 ~-~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
. .... ..+...|.+++|+|++++|+++.. |+.|++|+..
T Consensus 252 ~~~~~~~~~~~~~v~~v~~sp~g~~las~~~------D~~v~lw~~~ 292 (316)
T 3bg1_A 252 TWSPKLLHKFNDVVWHVSWSITANILAVSGG------DNKVTLWKES 292 (316)
T ss_dssp CCBCCEEEECSSCEEEEEECTTTCCEEEEES------SSCEEEEEEC
T ss_pred chhhhhhhcCCCcEEEEEEcCCCCEEEEEcC------CCeEEEEEEC
Confidence 1 1112 235678999999999999998854 9999999975
No 96
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=8.6e-37 Score=263.69 Aligned_cols=266 Identities=13% Similarity=0.166 Sum_probs=219.7
Q ss_pred eeeecCCCCCceEEEEcCC---CCEEEEEecCCcEEEEecCC-ccee-eeeecCCCcEEEEEeecCCCCEEEEeeCCCcE
Q 040533 80 LLKVTGEDDFPTSISWSQD---AKTLAVGYMASKLQLWDAET-SKLI-RNLEGHDKRVATASWNHWNGHILTSGSQDKSI 154 (364)
Q Consensus 80 ~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 154 (364)
...+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+| ++++|++++.||.|
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v 110 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTA 110 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCCCcE
Confidence 3445699999999999999 69999999999999999987 5544 77888999999999999 99999999999999
Q ss_pred EEEEcccCcceeeeeecccCcEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 155 INHDVRVSNNVTSRINAHTAEVCGLKW--SNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
++||++++.. .....|...|.+++| +|++++|++++.|+.|++||++... .+..+..+ ..+.++.+.+. .
T Consensus 111 ~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~-~~~~~~~~~~~--~ 182 (368)
T 3mmy_A 111 KMWDLSSNQA--IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN---PMMVLQLP-ERCYCADVIYP--M 182 (368)
T ss_dssp EEEETTTTEE--EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS---CSEEEECS-SCEEEEEEETT--E
T ss_pred EEEEcCCCCc--eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc---EEEEEecC-CCceEEEecCC--e
Confidence 9999987763 335679999999999 8999999999999999999988754 35666544 45666666653 4
Q ss_pred EEEeecCCCCCeEEEEECCCCeEEEEEe---cCCCeEEEEEcCCccc----eeeeccCCccCCCCeEEEeeCCCC---ce
Q 040533 233 VLASGGGTQDGCIKIWNVQKGTCIHSVD---TKAQICGLEWNRHHKE----ILSGHGFSSSGDGQKLCLWKYPHM---TK 302 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~----l~~~~~~~~~~~~~~i~i~d~~~~---~~ 302 (364)
+++.. .++.+.+|+++......... .......+.+.++... ++++. .++.|++||+... ..
T Consensus 183 ~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~dg~i~i~~~~~~~~~~~ 253 (368)
T 3mmy_A 183 AVVAT---AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS------IEGRVAIHYINPPNPAKD 253 (368)
T ss_dssp EEEEE---GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE------TTSEEEEEESSCSCHHHH
T ss_pred eEEEe---CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec------CCCcEEEEecCCCCcccc
Confidence 44433 69999999998865544332 2245666666665554 66664 4999999999887 55
Q ss_pred eeecccccc------------ceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 303 WGELQHQTS------------RILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 303 ~~~~~~~~~------------~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+..+..|.. .|++++|+|++++|++++.||.|++||+.+++.+..+.+|..+|++++|+|.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 326 (368)
T 3mmy_A 254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHN 326 (368)
T ss_dssp SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTT
T ss_pred ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCC
Confidence 667777765 7999999999999999999999999999999988899999999999999995
No 97
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9e-37 Score=266.94 Aligned_cols=269 Identities=22% Similarity=0.386 Sum_probs=224.3
Q ss_pred eeeecCCCCC--ceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEE
Q 040533 80 LLKVTGEDDF--PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG-HDKRVATASWNHWNGHILTSGSQDKSIIN 156 (364)
Q Consensus 80 ~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 156 (364)
.+...+|... +.+++|++ ..+++++.||.|++||+.+++....+.. |...|.+++|+| ++++|++|+.||.|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i 160 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDI 160 (401)
T ss_dssp EEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred eeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC-CCCEEEEECCCCeEEE
Confidence 3444466555 44566664 5577888999999999999998877765 788999999999 9999999999999999
Q ss_pred EEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 157 HDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
||+.+++. ...+.+|...|.+++|+ ++++++++.||.|++||++.. ...+..+.+|...|.+++|+|++ .++++
T Consensus 161 wd~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~s 234 (401)
T 4aez_A 161 YDVESQTK-LRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIA--NHQIGTLQGHSSEVCGLAWRSDG-LQLAS 234 (401)
T ss_dssp EETTTCCE-EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTS-SEEEE
T ss_pred EECcCCeE-EEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccC--cceeeEEcCCCCCeeEEEEcCCC-CEEEE
Confidence 99987764 66777999999999994 569999999999999998853 24577788899999999999988 56666
Q ss_pred ecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeE
Q 040533 237 GGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILE 315 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 315 (364)
++ .|+.|++||+++++.+..+. +...+.+++|+|++..+++..+ ++.|+.|++||+.+++.+..+. +...|.+
T Consensus 235 ~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~---gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~ 308 (401)
T 4aez_A 235 GG--NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG---GTMDKQIHFWNAATGARVNTVD-AGSQVTS 308 (401)
T ss_dssp EE--TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC---CTTTCEEEEEETTTCCEEEEEE-CSSCEEE
T ss_pred Ee--CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec---CCCCCEEEEEECCCCCEEEEEe-CCCcEEE
Confidence 65 79999999999999888875 4578999999998876665321 1359999999999999988886 5578999
Q ss_pred EeecCCCCEEEEE--eCCCcEEEEEeeCCCCCc--ceeccCCceeeeeeccC
Q 040533 316 LSQSPDGLTVVSA--AADETLRFWEAFGPSGSG--DFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 316 i~~~~~~~~l~~~--~~dg~i~vw~~~~~~~~~--~~~~~~~~v~~~~~sp~ 363 (364)
++|+|++++|+++ +.||.|++||+.+++... .+.+|.+.|.+++|+|.
T Consensus 309 ~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~d 360 (401)
T 4aez_A 309 LIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD 360 (401)
T ss_dssp EEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTT
T ss_pred EEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCC
Confidence 9999999999994 489999999999865544 35689999999999985
No 98
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=261.50 Aligned_cols=284 Identities=15% Similarity=0.204 Sum_probs=225.5
Q ss_pred eeecccCCCc----c-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 47 YSNMMDWGRN----N-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 47 ~~~~~~~~~~----~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
.+.+++|+|+ . +++++.|+.|++||+.+........+.+|...|++++|+|++++|++|+.||.|++||+.+++.
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 120 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA 120 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc
Confidence 3888999986 3 5666779999999999743333345668999999999999999999999999999999999887
Q ss_pred eeeeecCCCcEEEEEe--ecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040533 122 IRNLEGHDKRVATASW--NHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 199 (364)
.. +..|...|.+++| +| ++.+|++++.||.|++||+++++. ...+..+ ..+.++.+.+ ..+++++.++.+.+
T Consensus 121 ~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~i~~ 194 (368)
T 3mmy_A 121 IQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNP-MMVLQLP-ERCYCADVIY--PMAVVATAERGLIV 194 (368)
T ss_dssp EE-EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSC-SEEEECS-SCEEEEEEET--TEEEEEEGGGCEEE
T ss_pred ee-eccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcE-EEEEecC-CCceEEEecC--CeeEEEeCCCcEEE
Confidence 76 4569999999999 77 889999999999999999997764 4555544 4566777664 47888899999999
Q ss_pred EeCCCCCCCcceEEe-cccccceeEEEEccCCCc---EEEeecCCCCCeEEEEECCCC---eEEEEEecCC---------
Q 040533 200 WDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFN---VLASGGGTQDGCIKIWNVQKG---TCIHSVDTKA--------- 263 (364)
Q Consensus 200 wd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~---~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~~~--------- 263 (364)
||++.... ..... ..+...+.++.+.++... .+++++ .|+.|++||++.. .....+..+.
T Consensus 195 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (368)
T 3mmy_A 195 YQLENQPS--EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS--IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP 270 (368)
T ss_dssp EECSSSCE--EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE--TTSEEEEEESSCSCHHHHSEEEECSEEC----CCC
T ss_pred EEeccccc--hhhhccccccCCCceEEEcccCCCCCCeEEEec--CCCcEEEEecCCCCccccceeeeeeeccccccccc
Confidence 99876432 11221 223345566666554432 255555 8999999999887 4455555443
Q ss_pred ----CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 264 ----QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 264 ----~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
.+.+++|+|++++++++.. |+.|++||+.+++++..+..|...|++++|+|+|++|++++.|+..+.|++
T Consensus 271 ~~~~~v~~~~~sp~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 271 QDIYAVNGIAFHPVHGTLATVGS------DGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEECCEEEEEECTTTCCEEEEET------TSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred ccccceEEEEEecCCCEEEEEcc------CCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence 6999999999999999855 999999999999999999999999999999999999999999987777776
Q ss_pred eCCCCCc
Q 040533 340 FGPSGSG 346 (364)
Q Consensus 340 ~~~~~~~ 346 (364)
...+...
T Consensus 345 ~~~~~~~ 351 (368)
T 3mmy_A 345 YNPQKKN 351 (368)
T ss_dssp CCTTSCC
T ss_pred cCCCccc
Confidence 5544433
No 99
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-36 Score=266.59 Aligned_cols=281 Identities=11% Similarity=0.128 Sum_probs=227.6
Q ss_pred eecccCCCc-cEEEEEeCCeEEEEECCCCc---eeeeee-----------------------------------------
Q 040533 48 SNMMDWGRN-NILAIALGLELYLWKQENGE---VQKLLK----------------------------------------- 82 (364)
Q Consensus 48 ~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~---~~~~~~----------------------------------------- 82 (364)
+.+++|+++ .+++++.++.|++||+.+++ ......
T Consensus 7 ~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (450)
T 2vdu_B 7 LQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKR 86 (450)
T ss_dssp CCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC--------------------------------------
T ss_pred EEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccc
Confidence 566778885 47788889999999999887 322221
Q ss_pred -----------ecCCCCCceEEEEcCCCCEE-EEEecCCcEEEEecC--Ccceeeeee--cCCCcEEEEEeecCCCCEEE
Q 040533 83 -----------VTGEDDFPTSISWSQDAKTL-AVGYMASKLQLWDAE--TSKLIRNLE--GHDKRVATASWNHWNGHILT 146 (364)
Q Consensus 83 -----------~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~ 146 (364)
.++|.+.|.+++|+|++++| ++|+.||.|+|||+. +++.+..+. .|...|.+++|+| ++.+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~ 165 (450)
T 2vdu_B 87 TAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVI 165 (450)
T ss_dssp -------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEE
T ss_pred cCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEE
Confidence 01344479999999999996 889999999999999 888888776 5778999999999 999999
Q ss_pred EeeCCCcEEEEEcccCcc---eeeeeecccCcEEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCCCCcceEE-eccccc
Q 040533 147 SGSQDKSIINHDVRVSNN---VTSRINAHTAEVCGLKWSNE---GNLLASGGDDNLVHVWDHSKMSSSKCLHR-FRDHRA 219 (364)
Q Consensus 147 ~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~ 219 (364)
+++.+|.+++|++.+... ....+.+|...|.+++|+|+ +++|++++.|+.|++||++... .+.. +.+|..
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~h~~ 242 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF---IVDKWLFGHKH 242 (450)
T ss_dssp EEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT---CEEEECCCCSS
T ss_pred EEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc---eeeeeecCCCC
Confidence 999999999999987653 22366789999999999999 9999999999999999987653 3555 558999
Q ss_pred ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec--------------------------CCCeEEEEEcCC
Q 040533 220 AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT--------------------------KAQICGLEWNRH 273 (364)
Q Consensus 220 ~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--------------------------~~~v~~~~~~~~ 273 (364)
.|.+++|+ ++ .++++++ .|+.|++||+++++++..+.. ...+..++|+|+
T Consensus 243 ~v~~~~~s-d~-~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 243 FVSSICCG-KD-YLLLSAG--GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp CEEEEEEC-ST-TEEEEEE--SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred ceEEEEEC-CC-CEEEEEe--CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 99999999 77 5666665 899999999999998888752 245889999999
Q ss_pred ccceeeeccCCccCCCCeEEEeeC--CCC---ceeeeccccccceeEEeecCCCCEEEEEeC------CCcEEEEEeeCC
Q 040533 274 HKEILSGHGFSSSGDGQKLCLWKY--PHM---TKWGELQHQTSRILELSQSPDGLTVVSAAA------DETLRFWEAFGP 342 (364)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~i~i~d~--~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------dg~i~vw~~~~~ 342 (364)
+++++++. ..++.|++|++ .++ +.+..+..| ..|.+++|+|++.++++++. +..|.+|.+...
T Consensus 319 ~~~l~~~~-----~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 319 LPFVAFFV-----EATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp SSEEEEEE-----TTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCEEEEEE-----CCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 99999875 23999999999 555 666677777 78999999996544444443 556899988754
No 100
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.9e-36 Score=267.70 Aligned_cols=257 Identities=19% Similarity=0.372 Sum_probs=224.5
Q ss_pred cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 84 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
.+|...|.++++ ++++|++|+.||.|++||+.+++....+.+|...|.+++| ++++|++|+.||.|++||+.+++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCC
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCc
Confidence 366778888877 7899999999999999999999999999999999999999 78899999999999999999876
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG 243 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 243 (364)
. ...+..|...|.+++|++ ..+++++.||.|++||++..........+.+|...|.+++| ++ ..+++++ .||
T Consensus 205 ~-~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~s~~--~dg 276 (435)
T 1p22_A 205 M-LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD-KYIVSAS--GDR 276 (435)
T ss_dssp E-EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ET-TEEEEEE--TTS
T ss_pred E-EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CC-CEEEEEe--CCC
Confidence 4 677789999999999974 59999999999999999876654444777889999999999 34 4666665 799
Q ss_pred eEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCC
Q 040533 244 CIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG 322 (364)
Q Consensus 244 ~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 322 (364)
.|++||+++++.+..+..+ ..+.++.++ +.+++++.. |+.|++||+.+++.+..+.+|...|.+++| ++
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS------DNTIRLWDIECGACLRVLEGHEELVRCIRF--DN 346 (435)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET------TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CS
T ss_pred eEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeC------CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cC
Confidence 9999999999999888754 678999884 677887754 999999999999999999999999999999 78
Q ss_pred CEEEEEeCCCcEEEEEeeCCC---------CCcceeccCCceeeeeeccC
Q 040533 323 LTVVSAAADETLRFWEAFGPS---------GSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 323 ~~l~~~~~dg~i~vw~~~~~~---------~~~~~~~~~~~v~~~~~sp~ 363 (364)
.+|++|+.||.|++||+.++. .+..+.+|.+.|.+++|.+.
T Consensus 347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 396 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF 396 (435)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSS
T ss_pred CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCC
Confidence 899999999999999998766 45667789999999998653
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.3e-36 Score=266.18 Aligned_cols=267 Identities=16% Similarity=0.246 Sum_probs=217.3
Q ss_pred CCceEEEEcCCCCEEE-EEecCCcEEEEecCCc----ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 88 DFPTSISWSQDAKTLA-VGYMASKLQLWDAETS----KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
.....++++|+...++ +++.||.|+||++... .....+.+|...|.+++|+|.++++|++|+.||.|++||+.++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 3445688888775444 5788999999998654 2345677899999999999977899999999999999999876
Q ss_pred c------ceeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcceEEe--cccccceeEEEEccCCCcE
Q 040533 163 N------NVTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCLHRF--RDHRAAVKALAWCPYQFNV 233 (364)
Q Consensus 163 ~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~ 233 (364)
. .....+.+|...|.+++|+|++ ++|++++.|+.|++||+++. +.+..+ ..|...|.+++|+|++..
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~- 190 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG---AAVLTLGPDVHPDTIYSVDWSRDGAL- 190 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT---EEEEEECTTTCCSCEEEEEECTTSSC-
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC---CccEEEecCCCCCceEEEEECCCCCE-
Confidence 3 3466788999999999999998 69999999999999998764 457777 789999999999999855
Q ss_pred EEeecCCCCCeEEEEECCCCeEEEEE-ecC-C-CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-eeecc-c
Q 040533 234 LASGGGTQDGCIKIWNVQKGTCIHSV-DTK-A-QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-WGELQ-H 308 (364)
Q Consensus 234 ~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~-~-~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~-~ 308 (364)
+++++ .|+.|++||+++++.+..+ ..+ . .+..+.|+|++.+++++.. .+.++.|++||+.+++. +.... .
T Consensus 191 l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~---~~~d~~i~iwd~~~~~~~~~~~~~~ 265 (402)
T 2aq5_A 191 ICTSC--RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS---RMSERQVALWDTKHLEEPLSLQELD 265 (402)
T ss_dssp EEEEE--TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC---TTCCEEEEEEETTBCSSCSEEEECC
T ss_pred EEEEe--cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc---CCCCceEEEEcCccccCCceEEecc
Confidence 45554 7999999999999999888 443 3 3899999999999998721 12399999999988765 33322 4
Q ss_pred cccceeEEeecCCCCEEEE-EeCCCcEEEEEeeCCCC-Ccceec--cCCceeeeeeccC
Q 040533 309 QTSRILELSQSPDGLTVVS-AAADETLRFWEAFGPSG-SGDFVS--HLDGLLSLKVSPI 363 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~-~~~dg~i~vw~~~~~~~-~~~~~~--~~~~v~~~~~sp~ 363 (364)
|...+.+++|+|++++|++ |+.||.|++||+.+++. +..+.. |.++|.+++|+|.
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~ 324 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPK 324 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCG
T ss_pred CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecc
Confidence 6678999999999999865 55799999999998875 445554 4589999999996
No 102
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.9e-37 Score=269.05 Aligned_cols=285 Identities=16% Similarity=0.203 Sum_probs=232.4
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcC-CCCEEEEEecCCcEEEEecCCcceeeeee-------------cCC
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMASKLQLWDAETSKLIRNLE-------------GHD 129 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------~~~ 129 (364)
++.+++|+...++..... .+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+. +|.
T Consensus 22 ~~~~~v~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVE--RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHHTEEECTTEEEC--CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred cCcceeeccccCcceeee--eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 445677777766654443 48999999999999 99999999999999999999887665543 589
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCC
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE---GNLLASGGDDNLVHVWDHSKMS 206 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~ 206 (364)
..|.+++|+|.++.+|++++.||.|++||+.+++. ...+ .+...+.++.|++. +.++++++.|+.|++||++..
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~- 176 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-ADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG- 176 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-ceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-
Confidence 99999999997778999999999999999987764 3333 47788999999984 459999999999999998765
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe-EEEEE----------------ecCCCeEEEE
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT-CIHSV----------------DTKAQICGLE 269 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~----------------~~~~~v~~~~ 269 (364)
+.+..+..|...|.+++|+|++..++++++ .||.|++||++++. .+..+ .+...+.+++
T Consensus 177 --~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 177 --SCSHILQGHRQEILAVSWSPRYDYILATAS--ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp --CCCEEECCCCSCEEEEEECSSCTTEEEEEE--TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred --ceeeeecCCCCcEEEEEECCCCCcEEEEEc--CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 447788889999999999999988888876 89999999998765 33333 2346799999
Q ss_pred EcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc-----cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 270 WNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT-----SRILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
|+|++++++++.. |+.|++||+.+++....+..+. ..+........+..+++++.|+.|++||+.+++.
T Consensus 253 ~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 326 (408)
T 4a11_B 253 FTSDGLHLLTVGT------DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ 326 (408)
T ss_dssp ECTTSSEEEEEET------TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred EcCCCCEEEEecC------CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence 9999999998854 9999999999988766544321 1222222233455677788899999999999999
Q ss_pred CcceeccCCceeeeeeccC
Q 040533 345 SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 345 ~~~~~~~~~~v~~~~~sp~ 363 (364)
+..+.+|.+.|++++|+|.
T Consensus 327 ~~~~~~~~~~v~~~~~s~~ 345 (408)
T 4a11_B 327 ITMLKGHYKTVDCCVFQSN 345 (408)
T ss_dssp EEEECCCSSCEEEEEEETT
T ss_pred eeeeccCCCeEEEEEEcCC
Confidence 9999999999999999985
No 103
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1e-35 Score=265.32 Aligned_cols=271 Identities=17% Similarity=0.246 Sum_probs=230.1
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEc--CCCCEEEEEecCCcEEEEecCCcce--
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWS--QDAKTLAVGYMASKLQLWDAETSKL-- 121 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~iw~~~~~~~-- 121 (364)
.+.+++|++++ +++++.|+.|++||+.+++... .+.+|...|.+++|+ ++++++++|+.||.|++||+.++..
T Consensus 164 ~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 164 GVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp CEEEEEECSTTEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred CEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEE--EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 47788888864 6777889999999999987644 455899999999998 5788999999999999999987653
Q ss_pred ---------------------eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEE
Q 040533 122 ---------------------IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLK 180 (364)
Q Consensus 122 ---------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 180 (364)
...+.+|...+.++. + +++++++++.||.|++||+++++. ...+.+|...|.+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~ 317 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTI 317 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCEEEEE
Confidence 445677888888874 5 889999999999999999987664 667788999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe
Q 040533 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD 260 (364)
Q Consensus 181 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 260 (364)
|+|+++++++|+.||.|++||++++ +.+..+.+|...|.+++|++ ..+++++ .||.|++||+.++.......
T Consensus 318 ~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~---~~l~s~s--~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 318 YDHERKRCISASMDTTIRIWDLENG---ELMYTLQGHTALVGLLRLSD---KFLVSAA--ADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECS---SEEEEEE--TTSEEEEEETTTCCEEEEEE
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCC---cEEEEEeCCCCcEEEEEEcC---CEEEEEe--CCCcEEEEECCCCceeeeec
Confidence 9999999999999999999998764 56888899999999999984 5677766 89999999999998888887
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeee-ccccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE-LQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
....+..++|++++.+++++. ++.|++||+.+++.+.. +..|...|.+++|+ +..++++++.||.+.+|-+
T Consensus 390 ~~~~~~~~~~~~~~~~l~~~~-------dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 390 HTNLSAITTFYVSDNILVSGS-------ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CTTCCCEEEEEECSSEEEEEE-------TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CCCCccEEEEEeCCCEEEEec-------CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 778889999999999998875 89999999999999986 67788999999997 3445566667776655543
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-37 Score=270.91 Aligned_cols=257 Identities=8% Similarity=0.068 Sum_probs=202.7
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.|++|+ |...++. +.+|...|.+++|+|+| .++.+.+|+.+.. ....
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~-----l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-~~~~ 81 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIG--QPKYAKD-----INCNSKNLFHVKEFPLE-------FENKLDFELAQQN-GLLN 81 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEE--EECCCSC-----CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-CSST
T ss_pred cEEEEEECCCCCEEEEEcCCceee--cccccce-----ecCCCccEEEEEECCCC-------CcceEEEEeCCCc-eEee
Confidence 37889999976 44456788888 7555432 25899999999999999 4555555554322 2223
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccC-----cEEEEEEcCCCCEEEEEeCCCeEEE
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTA-----EVCGLKWSNEGNLLASGGDDNLVHV 199 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~i 199 (364)
+ .|...|.+++|+| ++.+||+++.||.|++||... ....+. |.. .+.+++|||+|++|++|+.||+|++
T Consensus 82 ~-~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 82 S-QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp T-SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred c-CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 3 4578899999999 999999999999999999543 455555 655 4999999999999999999999999
Q ss_pred EeCCCCCCCc----ceEEe----cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE---EEEEe--cCCCeE
Q 040533 200 WDHSKMSSSK----CLHRF----RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC---IHSVD--TKAQIC 266 (364)
Q Consensus 200 wd~~~~~~~~----~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~--~~~~v~ 266 (364)
||+....... .+..+ .+|...|.+++|+|++ +++ ++ .|+.|++||+.+++. .+++. +...|.
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laa-ss--~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~ 230 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVA-AL--SNNSVFSMTVSASSHQPVSRMIQNASRRKIT 230 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEE-EE--TTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEE-Ee--CCCeEEEEECCCCccccceeeecccccCcEE
Confidence 9988753211 24555 5677899999999998 444 43 699999999988773 35553 346799
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEee--cCCCCEEEEEeCCCcEEEEEe
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQ--SPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~~~dg~i~vw~~ 339 (364)
+++|+ |..++++. ++.|++||+.+++......+|.+.|..++| +|++..|++++.||+ ++|..
T Consensus 231 svaFs--g~~LASa~-------~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 231 DLKIV--DYKVVLTC-------PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp CEEEE--TTEEEEEC-------SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred EEEEE--CCEEEEEe-------CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 99999 57777763 799999999988774444479999999999 999999999999999 99986
No 105
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-36 Score=265.24 Aligned_cols=262 Identities=11% Similarity=0.072 Sum_probs=216.5
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcc---eeeeeec-------------------------------------
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSK---LIRNLEG------------------------------------- 127 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~------------------------------------- 127 (364)
.++.+++|+|+|++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468899999999976666 57899999999998 5555442
Q ss_pred -----------------CCCcEEEEEeecCCCCEE-EEeeCCCcEEEEEcc--cCcceeeeee--cccCcEEEEEEcCCC
Q 040533 128 -----------------HDKRVATASWNHWNGHIL-TSGSQDKSIINHDVR--VSNNVTSRIN--AHTAEVCGLKWSNEG 185 (364)
Q Consensus 128 -----------------~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~--~~~~~~~~~~--~~~~~v~~~~~~~~~ 185 (364)
|...|.+++|+| ++++| ++++.||.|++||+. ++.. ...+. .|...|.+++|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ----------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCC
Confidence 233699999999 88885 899999999999998 5554 44444 567899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCc-ceEEecccccceeEEEEccC---CCcEEEeecCCCCCeEEEEECCCCeEEEEEe-
Q 040533 186 NLLASGGDDNLVHVWDHSKMSSSK-CLHRFRDHRAAVKALAWCPY---QFNVLASGGGTQDGCIKIWNVQKGTCIHSVD- 260 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~- 260 (364)
++|++++.+|.+++|++....... ....+.+|...|.+++|+|+ + .++++++ .|+.|++||+++++.+..+.
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~--~d~~i~vwd~~~~~~~~~~~~ 238 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSD--RDEHIKISHYPQCFIVDKWLF 238 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEE--TTSCEEEEEESCTTCEEEECC
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEc--CCCcEEEEECCCCceeeeeec
Confidence 999999999999999988765433 44467789999999999998 6 5666765 89999999999998887743
Q ss_pred -cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc-------------------------cccee
Q 040533 261 -TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-------------------------TSRIL 314 (364)
Q Consensus 261 -~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-------------------------~~~i~ 314 (364)
+...|.+++|+ ++++++++.. |+.|++||+.+++.+..+..+ ...|.
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAGG------DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEES------SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred CCCCceEEEEEC-CCCEEEEEeC------CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 55789999999 9999998854 999999999999988777532 34689
Q ss_pred EEeecCCCCEEEEEe-CCCcEEEEEe--eCC---CCCcceeccCCceeeeeeccC
Q 040533 315 ELSQSPDGLTVVSAA-ADETLRFWEA--FGP---SGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~-~dg~i~vw~~--~~~---~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+++|+|++++|++++ .|+.|++|++ ..+ +.+..+..| +.|.+++|+|.
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence 999999999999998 8999999999 554 344556666 88999999984
No 106
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=286.08 Aligned_cols=251 Identities=19% Similarity=0.329 Sum_probs=213.2
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC--CcceeeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEE
Q 040533 82 KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE--TSKLIRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINH 157 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~ 157 (364)
.+.+|.+.|++++|+|++++|++|+.||.|+|||+. +++....+.+|..+|.+++|+| + +++|++|+.||.|++|
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEE
Confidence 345999999999999999999999999999999998 5677788899999999999998 6 8999999999999999
Q ss_pred EcccCc-ceeeeeecccCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccC-----
Q 040533 158 DVRVSN-NVTSRINAHTAEVCGLKWSNE--GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY----- 229 (364)
Q Consensus 158 d~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 229 (364)
|+.++. .....+..|...|.+++|+|+ ++++++|+.||.|++||++.... .....+.+|...|.+++|+|.
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC-CCCEEEECCSSCEEEEEECCCC----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-cceeEeecCCCceEEEEecCcccccc
Confidence 998765 235667789999999999999 99999999999999999987643 334566789999999999994
Q ss_pred --------CCcEEEeecCCCCCeEEEEECCCC----eEEEEEe-cCCCeEEEEEcCC---ccceeeeccCCccCCCCeEE
Q 040533 230 --------QFNVLASGGGTQDGCIKIWNVQKG----TCIHSVD-TKAQICGLEWNRH---HKEILSGHGFSSSGDGQKLC 293 (364)
Q Consensus 230 --------~~~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~-~~~~v~~~~~~~~---~~~l~~~~~~~~~~~~~~i~ 293 (364)
+ .++++++ .||.|++||++++ .....+. +...|.+++|+|+ +.+++++.. |+.|+
T Consensus 162 ~~~~~~~d~-~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~------Dg~I~ 232 (753)
T 3jro_A 162 GEHNGTKES-RKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ------DRTCI 232 (753)
T ss_dssp -----CGGG-CCEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES------SSCEE
T ss_pred cccccCCCC-CEEEEEE--CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec------CCEEE
Confidence 5 5566665 7999999999877 4445554 3578999999999 899998855 99999
Q ss_pred EeeCCCCc-----eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 294 LWKYPHMT-----KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 294 i~d~~~~~-----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
+||+.+++ .......|...|++++|+|+|++|++|+.||.|++|++..+.
T Consensus 233 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99998864 334445688899999999999999999999999999998644
No 107
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=5.5e-35 Score=254.81 Aligned_cols=280 Identities=12% Similarity=0.121 Sum_probs=228.2
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEE-EEEecCCcEEEEecCCcceeeeeecCCCcEEEEE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTL-AVGYMASKLQLWDAETSKLIRNLEGHDKRVATAS 136 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 136 (364)
+++++.++.|++||+.+++...... .| ..+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 5 ~vs~~~d~~v~v~d~~~~~~~~~~~--~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNKVTATIP--VG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE--CS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEcCCCCEEEEEECCCCeEEEEee--cC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 4556678999999999988755443 44 458999999999977 566689999999999999988887554 899999
Q ss_pred eecCCCCEEE-EeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCCCcceEEe
Q 040533 137 WNHWNGHILT-SGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL-ASGGDDNLVHVWDHSKMSSSKCLHRF 214 (364)
Q Consensus 137 ~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~ 214 (364)
|+| ++++|+ +++.++.|++||+.+++. ...+. +...+.+++|+|+++.+ ++++.++.|++||+++. +.+..+
T Consensus 81 ~sp-dg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~ 154 (391)
T 1l0q_A 81 VSP-DGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK---AVINTV 154 (391)
T ss_dssp ECT-TSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEE
T ss_pred ECC-CCCEEEEEECCCCEEEEEECCCCeE-EEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEE
Confidence 999 887665 555779999999987764 44444 44568999999999977 67888999999998764 335555
Q ss_pred cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEE
Q 040533 215 RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 215 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i 294 (364)
..+ ..+.+++|+|+++.++++++ .++.|++||+++++....+.....+.+++|+|++++++++.. ...++.|++
T Consensus 155 ~~~-~~~~~~~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~~~v~~ 228 (391)
T 1l0q_A 155 SVG-RSPKGIAVTPDGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV---DKYFNTVSM 228 (391)
T ss_dssp ECC-SSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEE---CSSCCEEEE
T ss_pred ecC-CCcceEEECCCCCEEEEEeC--CCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEec---CcCCCcEEE
Confidence 544 45689999999988877765 789999999999999999888888999999999999888751 013899999
Q ss_pred eeCCCCceeeeccccccceeEEeecCCCCEE-EEEeCCCcEEEEEeeCCCCCcceeccCCc
Q 040533 295 WKYPHMTKWGELQHQTSRILELSQSPDGLTV-VSAAADETLRFWEAFGPSGSGDFVSHLDG 354 (364)
Q Consensus 295 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 354 (364)
||+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+
T Consensus 229 ~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp EETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred EECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 9999999888887765 47899999999987 67788999999999988877776655443
No 108
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.8e-35 Score=257.51 Aligned_cols=260 Identities=21% Similarity=0.433 Sum_probs=219.6
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 166 (364)
.++.|+||++ +.||+|. |++|+|||..+++....+. +|...|++++|+| ++++|++|+.||.|++||+++++. +
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~-~ 182 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKR-L 182 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-E
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcE-E
Confidence 3578999975 5788875 8999999999998877665 5778899999999 999999999999999999997764 6
Q ss_pred eeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEE
Q 040533 167 SRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIK 246 (364)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 246 (364)
..+.+|...+.+++++ +.+|++|+.|+.+++||.+... ..+..+.+|...+..+.|+|++. .+++++ .|+.++
T Consensus 183 ~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~--~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~--~D~~v~ 255 (420)
T 4gga_A 183 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE--HHVATLSGHSQEVCGLRWAPDGR-HLASGG--NDNLVN 255 (420)
T ss_dssp EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS--CEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSCEE
T ss_pred EEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc--eeeEEecccccceeeeeecCCCC-eeeeee--ccccce
Confidence 7788999999998875 5699999999999999987643 45677889999999999999995 556655 799999
Q ss_pred EEECCCCeE----EEEE-ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCC
Q 040533 247 IWNVQKGTC----IHSV-DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 247 i~d~~~~~~----~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
+|+..+++. +... .+...|.+++|+|.+..+++.. .++.|+.|++||+.+++++..+..| ..+.++.|+|+
T Consensus 256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~---~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~ 331 (420)
T 4gga_A 256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG---GGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPH 331 (420)
T ss_dssp EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEE---ECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETT
T ss_pred EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEE---eecCCCEEEEEeCCccccceeeccc-cceeeeeecCC
Confidence 999987653 2333 3557899999999877665421 2356999999999999999888765 46889999999
Q ss_pred CCEEEEEe--CCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 322 GLTVVSAA--ADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 322 ~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++.+++++ .||.|+|||+.+++.+..+.+|.+.|++|+|||.
T Consensus 332 ~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spd 375 (420)
T 4gga_A 332 YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 375 (420)
T ss_dssp TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred CCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 99988765 7999999999999999999999999999999995
No 109
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=9.3e-35 Score=256.83 Aligned_cols=284 Identities=12% Similarity=0.077 Sum_probs=234.0
Q ss_pred eecccCCCcc-EEEEE-eCCeEEEEECCCCceeeee---eecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee
Q 040533 48 SNMMDWGRNN-ILAIA-LGLELYLWKQENGEVQKLL---KVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~-~~~~i~iw~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
..+++|+|++ +++++ .++.|++||..+++..... .+.+|...|.+++|+|+++++++++.|+.|++||+++++.+
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK 204 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence 4467888854 44433 4678999999998876533 23488999999999999999999999999999999999999
Q ss_pred eeeecCCCcEEEEEeecCCCCEE-EEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEe--------C
Q 040533 123 RNLEGHDKRVATASWNHWNGHIL-TSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG--------D 193 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~ 193 (364)
..+..|...+.+++|+| +++.+ ++++.++.|++||+++++. ...+.. ...+.+++|+|+++.+++++ .
T Consensus 205 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 205 ATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp EEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEE-EEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred EEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcE-EEEecC-CCCceEEEEcCCCCEEEEEECCCCccccC
Confidence 99988999999999999 77766 4555899999999987654 444433 45699999999999999888 5
Q ss_pred CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCC
Q 040533 194 DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRH 273 (364)
Q Consensus 194 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~ 273 (364)
|+.|++||+++.. .+..+ .+...+.+++|+|+++.++++++ .++.|++||+.+++.+..+.....+.+++|+|+
T Consensus 282 dg~i~~~d~~~~~---~~~~~-~~~~~~~~~~~~~~g~~l~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~d 355 (433)
T 3bws_A 282 GGRLGIYSMDKEK---LIDTI-GPPGNKRHIVSGNTENKIYVSDM--CCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPD 355 (433)
T ss_dssp CEEEEEEETTTTE---EEEEE-EEEECEEEEEECSSTTEEEEEET--TTTEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred CCeEEEEECCCCc---EEeec-cCCCCcceEEECCCCCEEEEEec--CCCEEEEEECCCCcEEEEecCCCCCCeEEEcCC
Confidence 8899999987643 23333 45668899999999988888866 899999999999999999988888999999999
Q ss_pred ccceeeeccC---------CccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeC-CCcEEEEEeeC
Q 040533 274 HKEILSGHGF---------SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA-DETLRFWEAFG 341 (364)
Q Consensus 274 ~~~l~~~~~~---------~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~vw~~~~ 341 (364)
+++++++... .+++.||.|++||+.+++.+..+..+ ..+.+++|+|+|++|++++. |+.|++|++..
T Consensus 356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 9988877531 23344789999999999988888764 57899999999999988875 99999999863
No 110
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.4e-35 Score=255.58 Aligned_cols=264 Identities=16% Similarity=0.142 Sum_probs=202.2
Q ss_pred CCCceEEEEcCCCCEEEEEecCC-------cEEEEecCCccee----------eeeecCCCcEEEEEeecCCCCEEEEe-
Q 040533 87 DDFPTSISWSQDAKTLAVGYMAS-------KLQLWDAETSKLI----------RNLEGHDKRVATASWNHWNGHILTSG- 148 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg-------~i~iw~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~~~- 148 (364)
..+|++++|+||+++|++|+.+. .|++|++..+... ..+..|...|.++++ +++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~---~~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA---SKGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE---ETTEEEEEC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe---CCCEEEEEE
Confidence 45899999999999999997543 5999998755321 235567788888877 55566665
Q ss_pred ----------eCCCcEEEEEcccCcceeeee--------ecccCcEEEEEEcCCCCEEEEE--eCCCeEEEEeCCCCCCC
Q 040533 149 ----------SQDKSIINHDVRVSNNVTSRI--------NAHTAEVCGLKWSNEGNLLASG--GDDNLVHVWDHSKMSSS 208 (364)
Q Consensus 149 ----------~~dg~i~~~d~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~ 208 (364)
+.|+.+++|++.......... ..+...+.+++|+|||++++++ +.|++|++||+++.
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~--- 167 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL--- 167 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT---
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC---
Confidence 457789999987665322221 2344568999999999987654 47899999998764
Q ss_pred cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe---cCCCeEEEEEcCCccceeeeccCCc
Q 040533 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD---TKAQICGLEWNRHHKEILSGHGFSS 285 (364)
Q Consensus 209 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~ 285 (364)
+.+..+. |...|.+++|+|++. ++++++ ++.+.+|+..+++.+.... +...+.+++|+|+++.++++..-
T Consensus 168 ~~~~~~~-~~~~V~~v~fspdg~-~l~s~s---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d-- 240 (365)
T 4h5i_A 168 TEKFEIE-TRGEVKDLHFSTDGK-VVAYIT---GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLK-- 240 (365)
T ss_dssp EEEEEEE-CSSCCCEEEECTTSS-EEEEEC---SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEES--
T ss_pred cEEEEeC-CCCceEEEEEccCCc-eEEecc---ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecC--
Confidence 3455554 778899999999994 566654 6678888888887765442 33569999999999999987540
Q ss_pred cCCCCeEEEeeCCCCce----eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcce-eccCCceeeeee
Q 040533 286 SGDGQKLCLWKYPHMTK----WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDF-VSHLDGLLSLKV 360 (364)
Q Consensus 286 ~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~ 360 (364)
++....+++|++..... ...+.+|...|++++|+|+|++||+|+.|++|+|||+.+++.+..+ .+|.++|++|+|
T Consensus 241 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f 320 (365)
T 4h5i_A 241 KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI 320 (365)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE
T ss_pred CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE
Confidence 01122688898876543 3456788999999999999999999999999999999999888775 689999999999
Q ss_pred ccC
Q 040533 361 SPI 363 (364)
Q Consensus 361 sp~ 363 (364)
||.
T Consensus 321 Spd 323 (365)
T 4h5i_A 321 SPD 323 (365)
T ss_dssp CTT
T ss_pred CCC
Confidence 995
No 111
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-35 Score=253.61 Aligned_cols=246 Identities=20% Similarity=0.323 Sum_probs=205.8
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC--CCEEEEEecCCcEEEEecCCcc--e
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSK--L 121 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~--~ 121 (364)
+.+++|++++ +++++.|+.|++||+..+.......+.+|...|++++|+|+ +++|++|+.||.|++||+.+++ .
T Consensus 14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 93 (379)
T 3jrp_A 14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ 93 (379)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeE
Confidence 7888888854 56666799999999986655556677799999999999987 8999999999999999999887 6
Q ss_pred eeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccCcc-eeeeeecccCcEEEEEEcC-------------CC
Q 040533 122 IRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINHDVRVSNN-VTSRINAHTAEVCGLKWSN-------------EG 185 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~-------------~~ 185 (364)
...+..|...|.+++|+| + +.+|++++.||.|++||++.... ....+..|...|.+++|+| ++
T Consensus 94 ~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T 3jrp_A 94 IAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 172 (379)
T ss_dssp EEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTT
T ss_pred eeeecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCC
Confidence 777888999999999999 7 89999999999999999987642 3445678999999999999 68
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCC-cceEEecccccceeEEEEccCC--CcEEEeecCCCCCeEEEEECCCCe---EEEEE
Q 040533 186 NLLASGGDDNLVHVWDHSKMSSS-KCLHRFRDHRAAVKALAWCPYQ--FNVLASGGGTQDGCIKIWNVQKGT---CIHSV 259 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~ 259 (364)
.++++++.|+.|++||++..... .....+.+|...|.+++|+|++ ..++++++ .||.|++||++++. .....
T Consensus 173 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~ 250 (379)
T 3jrp_A 173 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNEQGPWKKTLL 250 (379)
T ss_dssp CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCEEEES
T ss_pred CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe--CCCEEEEEeCCCCCccceeeee
Confidence 99999999999999998765432 3456778899999999999994 36777766 89999999998864 22222
Q ss_pred e---cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 260 D---TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 260 ~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
. +...+.+++|+|++++++++.. |+.|++|++.....
T Consensus 251 ~~~~~~~~v~~~~~s~~g~~l~~~~~------dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 251 KEEKFPDVLWRASWSLSGNVLALSGG------DNKVTLWKENLEGK 290 (379)
T ss_dssp SSSCCSSCEEEEEECSSSCCEEEEES------SSSEEEEEEEETTE
T ss_pred ccccCCCcEEEEEEcCCCCEEEEecC------CCcEEEEeCCCCCc
Confidence 2 4567999999999999998854 99999999875443
No 112
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=239.62 Aligned_cols=259 Identities=21% Similarity=0.413 Sum_probs=215.2
Q ss_pred ceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee
Q 040533 90 PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE--GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167 (364)
Q Consensus 90 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 167 (364)
..+|+||+++ +||+| .|++|+|||+++++.+..+. +|...|.+++|+| ++++|++|+.||+|++||+++++. ..
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~-~~ 103 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKR-LR 103 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE-EE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCcee-EE
Confidence 4689999876 77776 59999999999999887765 5778899999999 999999999999999999997764 67
Q ss_pred eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEE
Q 040533 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI 247 (364)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 247 (364)
.+.+|...+.++.+ ++..+++++.++.+++|+..... ..+..+.+|...+..+.+.+++. ++++++ .|+.|++
T Consensus 104 ~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~--~d~~i~i 176 (318)
T 4ggc_A 104 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE--HHVATLSGHSQEVCGLRWAPDGR-HLASGG--NDNLVNV 176 (318)
T ss_dssp EEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS--CEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSCEEE
T ss_pred EecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc--eeEEEEcCccCceEEEEEcCCCC-EEEEEe--cCcceeE
Confidence 78899998887665 46699999999999999977543 45677788999999999999985 555655 7999999
Q ss_pred EECCCCeEE-----EEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCC
Q 040533 248 WNVQKGTCI-----HSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDG 322 (364)
Q Consensus 248 ~d~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 322 (364)
||+++++.. ........+..+.++|.+..++... +++.++.|++||........... +...+..+.|+|++
T Consensus 177 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG---GGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHY 252 (318)
T ss_dssp EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEE---ECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTT
T ss_pred EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEE---ecCCCCEEEEEeccccccccccc-ceeeeeeeeecccc
Confidence 999876532 2223457799999999887765321 23568999999998887766554 56679999999999
Q ss_pred CEEEEEe--CCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 323 LTVVSAA--ADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 323 ~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
..+++++ .||.|++||+.+++.+..+.+|.+.|++++|||.
T Consensus 253 ~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd 295 (318)
T 4ggc_A 253 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 295 (318)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred cceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 9887764 7999999999999999999999999999999995
No 113
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.5e-34 Score=244.63 Aligned_cols=250 Identities=14% Similarity=0.258 Sum_probs=205.3
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCce--eeeeeecCCCCCceEEEEcC--CCCEEEEEecCCcEEEEecCCc-
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEV--QKLLKVTGEDDFPTSISWSQ--DAKTLAVGYMASKLQLWDAETS- 119 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~- 119 (364)
.+.+++|+|++ +++++.|+.|++||+.++.. .....+.+|...|++++|+| ++++|++|+.||.|++||+.++
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~ 92 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ 92 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTS
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCc
Confidence 37888888854 66777899999999986642 33455668999999999999 6999999999999999999887
Q ss_pred --------ceeeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccCcceeee------------eecccCcEE
Q 040533 120 --------KLIRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINHDVRVSNNVTSR------------INAHTAEVC 177 (364)
Q Consensus 120 --------~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~------------~~~~~~~v~ 177 (364)
+.+..+..|...|.+++|+| + +.+|++++.||.|++||+++....... ...|...+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (351)
T 3f3f_A 93 EECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDF 171 (351)
T ss_dssp CTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCE
T ss_pred ccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCccccee
Confidence 55777888999999999999 7 999999999999999999876532111 125778899
Q ss_pred EEEEcCC---CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCC---cEEEeecCCCCCeEEEEECC
Q 040533 178 GLKWSNE---GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF---NVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 178 ~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~g~~d~~i~i~d~~ 251 (364)
+++|+|+ +.++++++.++.+.+|+.... ....+..+.+|...|.+++|+|++. .++++++ .||.|++||++
T Consensus 172 ~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~--~dg~i~iwd~~ 248 (351)
T 3f3f_A 172 CLSWCPSRFSPEKLAVSALEQAIIYQRGKDG-KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC--KDGRIRIFKIT 248 (351)
T ss_dssp EEEECCCSSSCCEEEEEETTEEEEEEECTTS-CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE--TTSCEEEEEEE
T ss_pred EEEeccCCCCCcEEEEecCCCcEEEEccCCC-ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc--CCCeEEEEeCC
Confidence 9999997 899999999999987776543 2244677888999999999999974 5777776 89999999998
Q ss_pred CC----------------------------------------------eEEEEEec-CCCeEEEEEcCCccceeeeccCC
Q 040533 252 KG----------------------------------------------TCIHSVDT-KAQICGLEWNRHHKEILSGHGFS 284 (364)
Q Consensus 252 ~~----------------------------------------------~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~ 284 (364)
++ +.+..+.. ...|.+++|+|++++|+++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-- 326 (351)
T 3f3f_A 249 EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGD-- 326 (351)
T ss_dssp ECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEET--
T ss_pred CCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecC--
Confidence 75 44455543 477999999999999998854
Q ss_pred ccCCCCeEEEeeCCCCceeeec
Q 040533 285 SSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
|+.|++|++.+++.+..+
T Consensus 327 ----dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 327 ----DGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ----TSCEEEEEECTTSCEEEE
T ss_pred ----CCcEEEEecCcCcchhhe
Confidence 999999999987665544
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-35 Score=248.83 Aligned_cols=261 Identities=12% Similarity=0.090 Sum_probs=203.0
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC---------Ccceeeeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE---------TSKLIRNLE 126 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~---------~~~~~~~~~ 126 (364)
..+++++.|+.|++||+.+++...... ...|.++.|+|+ +++|+.|++|++|+.. +++.+..+.
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 347888899999999999988755554 456788889988 9999999999999765 444444444
Q ss_pred -cCCCcEEEEEeecC-CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 127 -GHDKRVATASWNHW-NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 127 -~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
.|...|.+++|+|. +++++++++.||.|++||+++++........+...+.+++|+|++.+|++|+.||.|++||+++
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 57788999999982 5789999999999999999987753333345566899999999999999999999999999987
Q ss_pred CCCCcce-EEecc-cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec----CCCe--EEEEEcCCccc
Q 040533 205 MSSSKCL-HRFRD-HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT----KAQI--CGLEWNRHHKE 276 (364)
Q Consensus 205 ~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~v--~~~~~~~~~~~ 276 (364)
... + ..+.. |..+|.+++|+|++. ++++++ |+.|++||+++++.+..+.. ...+ .+++|+|++++
T Consensus 202 ~~~---~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 202 PDQ---ASSRFPVDEEAKIKEVKFADNGY-WMVVEC---DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp TTS---CCEECCCCTTSCEEEEEECTTSS-EEEEEE---SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred CCC---CccEEeccCCCCEEEEEEeCCCC-EEEEEe---CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence 643 4 56677 999999999999984 556654 45999999998876544331 1223 46999999999
Q ss_pred eeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC---CCCEEEEEeCCCcEEEEEe
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP---DGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~dg~i~vw~~ 339 (364)
++++. +.++.+++|++.+....... .++..++|.+ +++.+++++.||.+.++-.
T Consensus 275 l~~~s-----~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 275 MIAYS-----NESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp EEEEE-----TTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred EEEec-----CCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 99863 22889999999766544333 5678899999 8899999999999998754
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.6e-34 Score=249.44 Aligned_cols=275 Identities=12% Similarity=0.091 Sum_probs=192.4
Q ss_pred ccEEEEEeCCeEEEEECCCCce-------eeeeeecCCCCCceEEEEc--------------------CCCCEEEEEecC
Q 040533 56 NNILAIALGLELYLWKQENGEV-------QKLLKVTGEDDFPTSISWS--------------------QDAKTLAVGYMA 108 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~-------~~~~~~~~~~~~v~~~~~s--------------------~~~~~l~~~~~d 108 (364)
.++++++.++.|.+|+...... ........+...+..+.|+ +++.+||+|+.|
T Consensus 31 ~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~~d 110 (393)
T 4gq1_A 31 SNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACVCQD 110 (393)
T ss_dssp TTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEEEETT
T ss_pred CCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEEeCC
Confidence 3589999999999998642211 0111111334444444444 345689999999
Q ss_pred CcEEEEecCCccee-----eeeecCCCcEEEEEeec-------CCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcE
Q 040533 109 SKLQLWDAETSKLI-----RNLEGHDKRVATASWNH-------WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEV 176 (364)
Q Consensus 109 g~i~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~-------~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v 176 (364)
++|+|||.++++.. ..+.+|.+.|.+++|+| .++++|++|+.|++|++||++++.. ...+..|..++
T Consensus 111 ~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~-~~~~~~~~~~v 189 (393)
T 4gq1_A 111 NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP-ILAGYPLSSPG 189 (393)
T ss_dssp SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE-EEEEEECSSCE
T ss_pred CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce-eeeecCCCCCc
Confidence 99999999887543 34678999999999987 2678999999999999999987765 45566788999
Q ss_pred EEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCCCcce----------------------EEecccccceeEEEEc-cCCCc
Q 040533 177 CGLKWSNEG-NLLASGGDDNLVHVWDHSKMSSSKCL----------------------HRFRDHRAAVKALAWC-PYQFN 232 (364)
Q Consensus 177 ~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~----------------------~~~~~~~~~v~~~~~~-~~~~~ 232 (364)
.+++|+|++ .+|++++.|+.|++||++........ ....+|...+.++.|. |++ .
T Consensus 190 ~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~ 268 (393)
T 4gq1_A 190 ISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-S 268 (393)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTT-C
T ss_pred EEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCC-C
Confidence 999999987 48999999999999999865331110 1123567788999987 566 5
Q ss_pred EEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeE------------------EEEEcC-Cc-cceeeeccCCccCCCCe
Q 040533 233 VLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQIC------------------GLEWNR-HH-KEILSGHGFSSSGDGQK 291 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~------------------~~~~~~-~~-~~l~~~~~~~~~~~~~~ 291 (364)
.+++++ .|+++++||+..++....+..+ ..+. ...++| .+ .++++| +.|+.
T Consensus 269 ~l~s~s--~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg------s~Dg~ 340 (393)
T 4gq1_A 269 GILAMC--KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH------SQHGL 340 (393)
T ss_dssp EEEEEC--TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE------TTTTE
T ss_pred EEEEEe--CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEE------CCCCE
Confidence 566655 8999999999887655444221 1122 223333 22 233444 55999
Q ss_pred EEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 292 LCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 292 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
|++||..+++....+..|..+|.+++|+|||++||+++.|| +.+|++..
T Consensus 341 V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 341 IQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp EEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred EEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 99999999999988888999999999999999999998765 66666543
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-34 Score=272.26 Aligned_cols=244 Identities=20% Similarity=0.325 Sum_probs=205.7
Q ss_pred eeecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC--CCEEEEEecCCcEEEEecCCcc--
Q 040533 47 YSNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD--AKTLAVGYMASKLQLWDAETSK-- 120 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~-- 120 (364)
.+.+++|+|++ +++++.||.|++||+.++.......+.+|.+.|++++|+|+ +++|++|+.||.|++||+.+++
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~ 90 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS 90 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccc
Confidence 37888888853 77777899999999986665566677799999999999988 9999999999999999999886
Q ss_pred eeeeeecCCCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccCcc-eeeeeecccCcEEEEEEcC-------------C
Q 040533 121 LIRNLEGHDKRVATASWNHWN--GHILTSGSQDKSIINHDVRVSNN-VTSRINAHTAEVCGLKWSN-------------E 184 (364)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~-------------~ 184 (364)
....+..|...|.+++|+| + ++++++|+.||.|++||++.... ....+..|...|.+++|+| +
T Consensus 91 ~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d 169 (753)
T 3jro_A 91 QIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 169 (753)
T ss_dssp EEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGG
T ss_pred ccccccCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCC
Confidence 6777888999999999999 7 99999999999999999987632 3445678999999999999 5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCC-cceEEecccccceeEEEEccCC--CcEEEeecCCCCCeEEEEECCCCeEE-----
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSS-KCLHRFRDHRAAVKALAWCPYQ--FNVLASGGGTQDGCIKIWNVQKGTCI----- 256 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~~~~~----- 256 (364)
+.++++|+.||.|++||++..... .....+.+|...|.+++|+|++ ..++++++ .||.|++||+.++...
T Consensus 170 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s--~Dg~I~iwd~~~~~~~~~~~~ 247 (753)
T 3jro_A 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNEQGPWKKTL 247 (753)
T ss_dssp GCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--SSSCEEEEEESSSSSCCBCCB
T ss_pred CCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe--cCCEEEEecCCCCCCcceeEE
Confidence 899999999999999998865332 4566778899999999999993 36777776 8999999999886421
Q ss_pred -EEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC
Q 040533 257 -HSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 257 -~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
....+...+.+++|+|++++++++.. ||.|++|++..
T Consensus 248 ~~~~~~~~~v~~l~~spdg~~l~s~s~------Dg~I~vwd~~~ 285 (753)
T 3jro_A 248 LKEEKFPDVLWRASWSLSGNVLALSGG------DNKVTLWKENL 285 (753)
T ss_dssp SSSSCCSSCCCCEEECTTTCCEEEECS------SSCEECCBCCS
T ss_pred eccCCCCCceEEEEEcCCCCEEEEEcC------CCEEEEEecCC
Confidence 11124567999999999999998854 99999999874
No 117
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=100.00 E-value=4.9e-34 Score=250.03 Aligned_cols=300 Identities=12% Similarity=0.071 Sum_probs=234.1
Q ss_pred eecccCCCcc--EE-EEE----eCC----eEEEEEC--CCCceeeeeeecCCCCCceEEEEcC--------------CCC
Q 040533 48 SNMMDWGRNN--IL-AIA----LGL----ELYLWKQ--ENGEVQKLLKVTGEDDFPTSISWSQ--------------DAK 100 (364)
Q Consensus 48 ~~~~~~~~~~--~~-~~~----~~~----~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~s~--------------~~~ 100 (364)
+...+|++.+ ++ +++ .+| .+++||+ .+++......+.+|...+..+++++ .+.
T Consensus 65 ~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~ 144 (415)
T 2hqs_A 65 VQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRT 144 (415)
T ss_dssp CCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTC
T ss_pred cCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence 5667777643 34 444 357 8999999 8888655556678888888887765 266
Q ss_pred EEEEEecC------CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC---cEEEEEcccCcceeeeeec
Q 040533 101 TLAVGYMA------SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK---SIINHDVRVSNNVTSRINA 171 (364)
Q Consensus 101 ~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~ 171 (364)
.++.++.+ +.|++||++ +.....+..|...+.+++|+| +++.|++++.++ .|++||+.+++. ..+..
T Consensus 145 ~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~ 220 (415)
T 2hqs_A 145 RIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV--RQVAS 220 (415)
T ss_dssp EEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE--EEEEC
T ss_pred EEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcE--EEeec
Confidence 77776654 799999997 455677778999999999999 999999999875 999999987764 34667
Q ss_pred ccCcEEEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC--eEE
Q 040533 172 HTAEVCGLKWSNEGNLLA-SGGDDN--LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG--CIK 246 (364)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~-~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~ 246 (364)
|...+.+++|+|+|+.|+ +++.++ .|++||+.+.. ...+..|...+.+++|+|+++.+++++. .++ .|.
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~spdg~~l~~~s~--~~g~~~i~ 294 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQNLAFTSD--QAGRPQVY 294 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC----EEECCCCSSCEEEEEECTTSSEEEEEEC--TTSSCEEE
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC----EEeCcCCCCcccceEECCCCCEEEEEEC--CCCCcEEE
Confidence 888999999999999887 666555 49999987643 4566778888999999999977776653 344 788
Q ss_pred EEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEE
Q 040533 247 IWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 247 i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
+||+.+++..........+..++|+|+|++|+.+... ..+..|++||+.+++.. .+..+. .+.+++|+|+|++|+
T Consensus 295 ~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~---~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 295 KVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN---GGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVI 369 (415)
T ss_dssp EEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEEC---SSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEE
T ss_pred EEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECc---CCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEE
Confidence 8899888754433345678899999999999877531 11368999999988764 455554 789999999999999
Q ss_pred EEeCCC---cEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 327 SAAADE---TLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 327 ~~~~dg---~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+++.++ .|++||+. +.....+..|.+.|.+++|||.
T Consensus 370 ~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp EEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCC
T ss_pred EEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccc
Confidence 998877 79999986 4556778889999999999996
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=7.6e-33 Score=237.79 Aligned_cols=277 Identities=10% Similarity=0.102 Sum_probs=212.4
Q ss_pred eeecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEE-EEecCCcEEEEecCCcceeee
Q 040533 47 YSNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLA-VGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.+.+++|+|++ +++++.+..+++|+..+++...... ...+..+++.++++.++ +|+.|+.|++||..+++.+..
T Consensus 21 ~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~ 96 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQE----MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR 96 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEE----CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeee----cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE
Confidence 37889999864 7777778889999998776543332 22488899999888874 567789999999999999988
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEE--EeCCCeEEEEeC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLAS--GGDDNLVHVWDH 202 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~iwd~ 202 (364)
+. +...|.+++|++ + .++++ .++.|++||+.+.......+.. +...+++++ .++++ |+.||.|++||+
T Consensus 97 ~~-~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~ 166 (355)
T 3vu4_A 97 IK-VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKL 166 (355)
T ss_dssp EE-CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEEC
T ss_pred EE-CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEEC
Confidence 87 677999999976 3 34444 4789999999877223444433 444566666 56666 589999999999
Q ss_pred CCCCC------------Ccc-eEEecccccceeEEEEccCCCcEEEeecCCCCCe-EEEEECCCCeEEEEEe---cCCCe
Q 040533 203 SKMSS------------SKC-LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC-IKIWNVQKGTCIHSVD---TKAQI 265 (364)
Q Consensus 203 ~~~~~------------~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~-i~i~d~~~~~~~~~~~---~~~~v 265 (364)
+.... ..+ +..+.+|...|.+++|+|++ .++++++ .|++ |++||+++++++..+. +...|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s--~d~~~v~iwd~~~~~~~~~~~~g~h~~~v 243 (355)
T 3vu4_A 167 QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCS--QDGTIIRVFKTEDGVLVREFRRGLDRADV 243 (355)
T ss_dssp CC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEE--TTCSEEEEEETTTCCEEEEEECTTCCSCE
T ss_pred CCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEe--CCCCEEEEEECCCCcEEEEEEcCCCCCcE
Confidence 86431 012 67788999999999999998 5677766 8998 9999999999999997 56889
Q ss_pred EEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCcee--eecc---------------------ccccceeEEeecCCC
Q 040533 266 CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW--GELQ---------------------HQTSRILELSQSPDG 322 (364)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~---------------------~~~~~i~~i~~~~~~ 322 (364)
.+++|+|++++++++.. |+.|++||+...... ..+. .+......++|+++|
T Consensus 244 ~~~~~s~~~~~l~s~s~------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~ 317 (355)
T 3vu4_A 244 VDMKWSTDGSKLAVVSD------KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES 317 (355)
T ss_dssp EEEEECTTSCEEEEEET------TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS
T ss_pred EEEEECCCCCEEEEEEC------CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC
Confidence 99999999999999854 999999999765321 1111 111234678999999
Q ss_pred CEEEEEeCCCcEEEEEeeCCCCCc
Q 040533 323 LTVVSAAADETLRFWEAFGPSGSG 346 (364)
Q Consensus 323 ~~l~~~~~dg~i~vw~~~~~~~~~ 346 (364)
++|++++.||.+++|++..++...
T Consensus 318 ~~l~~~~~dg~~~~~~~~~~~~~~ 341 (355)
T 3vu4_A 318 SLVVVWPHTRMIETFKVVFDDEME 341 (355)
T ss_dssp EEEEEETTTTEEEEEEEEEETTTT
T ss_pred CEEEEEeCCCeEEEEEEEcCCCCc
Confidence 999999999999999998766543
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-34 Score=248.23 Aligned_cols=232 Identities=9% Similarity=0.012 Sum_probs=186.6
Q ss_pred EcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc---------cCcce
Q 040533 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR---------VSNNV 165 (364)
Q Consensus 95 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~---------~~~~~ 165 (364)
+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+| + +++++.|++|++|+.. +...+
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 34578899999999999999999999888776 46688889988 5 9999999999999765 23222
Q ss_pred eeeeecccCcEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCCCCcceEEe-cccccceeEEEEccCCCcEEEeecCCCC
Q 040533 166 TSRINAHTAEVCGLKWSN--EGNLLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d 242 (364)
......|...|.+++|+| +++++++++.||.|++||++.... +... ..+...+.+++|+|++ .++++|+ .|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~~pdg-~~lasg~--~d 191 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ---YIVHSAKSDVEYSSGVLHKDS-LLLALYS--PD 191 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE---EEEECCCSSCCCCEEEECTTS-CEEEEEC--TT
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE---EEEEecCCCCceEEEEECCCC-CEEEEEc--CC
Confidence 233336778999999999 999999999999999999886543 4433 3355679999999998 5777765 89
Q ss_pred CeEEEEECCCCeEE-EEEec--CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc---ccccee--
Q 040533 243 GCIKIWNVQKGTCI-HSVDT--KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH---QTSRIL-- 314 (364)
Q Consensus 243 ~~i~i~d~~~~~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~-- 314 (364)
|.|++||+++++.+ ..+.. ..+|.+++|+|++.+++++. ++.|++||+++++.+..+.. |...+.
T Consensus 192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (343)
T 3lrv_A 192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-------DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTV 264 (343)
T ss_dssp SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-------SSBEEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-------CCeEEEEEcCCCCcceeecccccccccccce
Confidence 99999999999877 66654 68899999999999999885 55999999999887766554 444444
Q ss_pred EEeecCCCCEEEEEeC-CCcEEEEEeeCCCCC
Q 040533 315 ELSQSPDGLTVVSAAA-DETLRFWEAFGPSGS 345 (364)
Q Consensus 315 ~i~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~ 345 (364)
+++|+|+|++|++++. |+.|++|++......
T Consensus 265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~ 296 (343)
T 3lrv_A 265 TYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN 296 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCS
T ss_pred EEEECCCCCEEEEecCCCCcEEEEEEcccccc
Confidence 5999999999999998 999999999766543
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-35 Score=254.49 Aligned_cols=243 Identities=11% Similarity=0.148 Sum_probs=192.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN 164 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 164 (364)
.-...|.+++|+|||+++|+++.|++|+ |.+.+ +.+.+|...|.+++|+| ++ .++.+.+|+.+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsP-dg-------~~~~~~~~~~~~~~- 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFP-LE-------FENKLDFELAQQNG- 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEEC-CC-------CCCTTTTSCCCSSC-
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECC-CC-------CcceEEEEeCCCce-
Confidence 3467899999999999999999999999 65444 45578999999999999 77 46666666543222
Q ss_pred eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc-----ceeEEEEccCCCcEEEeecC
Q 040533 165 VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA-----AVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~g 239 (364)
...+ .|...|.+++|+|+|.+||+++.||.|++||... .+..+. |.. .+.+++|+|+|+ ++++|+
T Consensus 79 -~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~-~LAsgs- 148 (588)
T 2j04_A 79 -LLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIES-SIVVGN- 148 (588)
T ss_dssp -SSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSSS-CEEEEE-
T ss_pred -Eeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCCC-EEEEEc-
Confidence 1122 4578999999999999999999999999999432 455555 554 499999999995 556655
Q ss_pred CCCCeEEEEECCCCe-------EEEEEecC-----CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce---ee
Q 040533 240 TQDGCIKIWNVQKGT-------CIHSVDTK-----AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK---WG 304 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~-------~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~---~~ 304 (364)
.||+|++||+.++. .+.++..+ ..|.+++|+|+| ++++.. |+.|++||+.+++. ..
T Consensus 149 -~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~------D~tVrlWd~~~~~~~~~~~ 219 (588)
T 2j04_A 149 -EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS------NNSVFSMTVSASSHQPVSR 219 (588)
T ss_dssp -TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET------TCCEEEECCCSSSSCCCEE
T ss_pred -CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC------CCeEEEEECCCCcccccee
Confidence 89999999999875 35666432 479999999999 555533 99999999988774 34
Q ss_pred ec-cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeee--ccC
Q 040533 305 EL-QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKV--SPI 363 (364)
Q Consensus 305 ~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~--sp~ 363 (364)
++ .+|...|.+++|+ |+.||+++ ++.|++||+.+++......+|.+.|.+++| +|.
T Consensus 220 tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d 278 (588)
T 2j04_A 220 MIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKE 278 (588)
T ss_dssp EEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSS
T ss_pred eecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCC
Confidence 56 4788899999999 68999987 699999999887664433389999999999 885
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.2e-33 Score=249.30 Aligned_cols=243 Identities=23% Similarity=0.432 Sum_probs=202.0
Q ss_pred eeecccCCCc--c-EEEEEeCCeEEEEECCC--------CceeeeeeecCCCCCceEEEEcCCCC-EEEEEecCCcEEEE
Q 040533 47 YSNMMDWGRN--N-ILAIALGLELYLWKQEN--------GEVQKLLKVTGEDDFPTSISWSQDAK-TLAVGYMASKLQLW 114 (364)
Q Consensus 47 ~~~~~~~~~~--~-~~~~~~~~~i~iw~~~~--------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw 114 (364)
.+++++|+|+ . +++++.+|.|++|++.+ +.......+.+|...|++++|+|++. +|++|+.||.|++|
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 209 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 209 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEE
Confidence 3777888885 3 44556789999999976 23445566779999999999999988 99999999999999
Q ss_pred ecCCcce-------eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc--ceeeeeecccCcEEEEEEcCCC
Q 040533 115 DAETSKL-------IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN--NVTSRINAHTAEVCGLKWSNEG 185 (364)
Q Consensus 115 ~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~ 185 (364)
++.++.. ...+..|...|.+++|+|.++.+|++++.||.|++||+++.. .....+..|...|++++|+|++
T Consensus 210 d~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 289 (430)
T 2xyi_A 210 DINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 289 (430)
T ss_dssp ETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSC
T ss_pred eCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCC
Confidence 9987422 455668999999999999778899999999999999999763 3456677899999999999988
Q ss_pred C-EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC------------
Q 040533 186 N-LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK------------ 252 (364)
Q Consensus 186 ~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~------------ 252 (364)
. ++++|+.||.|++||++... .++..+..|...|.+++|+|+++.++++++ .|+.|++||+..
T Consensus 290 ~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~ 365 (430)
T 2xyi_A 290 EFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTEDAED 365 (430)
T ss_dssp TTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEE--TTSCCEEEEGGGTTCCCCHHHHHH
T ss_pred CCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEe--CCCcEEEEeCCCCccccCcccccc
Confidence 7 78999999999999998743 457788889999999999999988888887 899999999987
Q ss_pred --CeEEEEEec-CCCeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCC
Q 040533 253 --GTCIHSVDT-KAQICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 253 --~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
.+.+..+.. ...|.+++|+|+++ +++++. .|+.|++|++..
T Consensus 366 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s------~dg~i~iw~~~~ 410 (430)
T 2xyi_A 366 GPPELLFIHGGHTAKISDFSWNPNEPWIICSVS------EDNIMQVWQMAE 410 (430)
T ss_dssp CCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE------TTSEEEEEEECH
T ss_pred CCcceEEEcCCCCCCceEEEECCCCCCEEEEEE------CCCCEEEeEccc
Confidence 245555544 46799999999999 566654 499999999864
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6.6e-33 Score=238.18 Aligned_cols=250 Identities=15% Similarity=0.116 Sum_probs=182.6
Q ss_pred EEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEE-EE
Q 040533 69 LWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHIL-TS 147 (364)
Q Consensus 69 iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~ 147 (364)
+|++.+.+. +.....|...|++++|+|||++|++|+.+| ++||++++++....... ..+..+++.+ +++.+ ++
T Consensus 3 i~s~~~~~~--~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNP--IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLH-RTNYVAFV 76 (355)
T ss_dssp ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECT-TSSEEEEE
T ss_pred cccccccCC--ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcC-CCCEEEEE
Confidence 344444443 234458999999999999999999998665 78999988876655442 2477788888 66655 67
Q ss_pred eeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEc
Q 040533 148 GSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC 227 (364)
Q Consensus 148 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 227 (364)
++.|+.|++||+.+++. ...+. +...|.+++|+++. ++++. |+.|++||+.... +.+..+.. +...++++
T Consensus 77 ~~~d~~v~iWd~~~~~~-~~~~~-~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~--~~~~~~~~---~~~~~~~s 146 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQD-VSRIK-VDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPW--KRITDDIR---FGGVCEFS 146 (355)
T ss_dssp CSSTTEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTC--CBSSCCEE---EEEEEEEE
T ss_pred ECCccEEEEEECCCCcE-EEEEE-CCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCc--eeeEEecc---CCceEEEE
Confidence 88889999999987764 44443 67799999999864 44443 7899999988751 22333332 34455666
Q ss_pred cCCCcEEEeecCCCCCeEEEEECCCCe---------------E-EEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCC
Q 040533 228 PYQFNVLASGGGTQDGCIKIWNVQKGT---------------C-IHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQ 290 (364)
Q Consensus 228 ~~~~~~~~~~~g~~d~~i~i~d~~~~~---------------~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 290 (364)
+ ..++++ +|+.||.|++||+.+++ + +..+. +...|.+++|+|+|++++++.. |+
T Consensus 147 ~--~~la~~-sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~------d~ 217 (355)
T 3vu4_A 147 N--GLLVYS-NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ------DG 217 (355)
T ss_dssp T--TEEEEE-ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET------TC
T ss_pred c--cEEEEe-CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC------CC
Confidence 6 244443 12389999999999865 1 44554 4578999999999999999854 99
Q ss_pred e-EEEeeCCCCceeeecc-c-cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 291 K-LCLWKYPHMTKWGELQ-H-QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 291 ~-i~i~d~~~~~~~~~~~-~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
. |++||+.+++++..+. + |...|.+++|+|+|++|++++.|++|++||+..+.
T Consensus 218 ~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 218 TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp SEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred CEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 8 9999999999999998 5 99999999999999999999999999999998654
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=8.7e-33 Score=244.20 Aligned_cols=284 Identities=11% Similarity=0.065 Sum_probs=227.1
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee-----eeecCCCcEEEEEeecC
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR-----NLEGHDKRVATASWNHW 140 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~v~~~~~~~~ 140 (364)
.|+.+|..++.......+.. ...+.+++|+|++.++++++.++.|++||+.+++... .+.+|...|.+++|+|
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~- 179 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKT-GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE- 179 (433)
T ss_dssp CEEECCBTTCSEEEEEEEEC-SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-
T ss_pred EEEEECCCCCcceEEEEEcC-CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-
Confidence 55555555554444444433 3456799999977788888888999999999998876 4457888999999998
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCCcceEEeccccc
Q 040533 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASG-GDDNLVHVWDHSKMSSSKCLHRFRDHRA 219 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 219 (364)
++.++++++.|+.|++||+++++. ...+..|...+.+++|+|+++.++++ +.|+.|++||+++. +.+..+.. ..
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~---~~~~~~~~-~~ 254 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLKTLAY-KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK---LEIRKTDK-IG 254 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETTTCCE-EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEECCC-CS
T ss_pred CCEEEEEECCCCEEEEEECCCceE-EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC---cEEEEecC-CC
Confidence 999999999999999999987664 56666888999999999999988544 47999999998764 33555544 45
Q ss_pred ceeEEEEccCCCcEEEeecCC-----CCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEE
Q 040533 220 AVKALAWCPYQFNVLASGGGT-----QDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 220 ~v~~~~~~~~~~~~~~~~~g~-----~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i 294 (364)
.+.+++|+|+++.+++++.+. .|+.|++||+.+++.+..+.+...+..++|+|+++.++++. +.++.|++
T Consensus 255 ~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-----~~~~~v~v 329 (433)
T 3bws_A 255 LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSD-----MCCSKIEV 329 (433)
T ss_dssp EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEE-----TTTTEEEE
T ss_pred CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEe-----cCCCEEEE
Confidence 589999999997666654211 37899999999999888887777899999999998665542 34999999
Q ss_pred eeCCCCceeeeccccccceeEEeecCCCCEEEEEeC---------------CCcEEEEEeeCCCCCcceeccCCceeeee
Q 040533 295 WKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAA---------------DETLRFWEAFGPSGSGDFVSHLDGLLSLK 359 (364)
Q Consensus 295 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---------------dg~i~vw~~~~~~~~~~~~~~~~~v~~~~ 359 (364)
||+.+++.+..+. +...+.+++|+|+|++|++++. ||.|++||+.+++....+.. ...+.+++
T Consensus 330 ~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~ 407 (433)
T 3bws_A 330 YDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLD 407 (433)
T ss_dssp EETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEE
T ss_pred EECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEE
Confidence 9999988887775 6677899999999999988876 57999999998887776665 55789999
Q ss_pred eccC
Q 040533 360 VSPI 363 (364)
Q Consensus 360 ~sp~ 363 (364)
|+|.
T Consensus 408 ~s~d 411 (433)
T 3bws_A 408 VSPD 411 (433)
T ss_dssp ECTT
T ss_pred EcCC
Confidence 9985
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=7.6e-32 Score=222.18 Aligned_cols=285 Identities=12% Similarity=0.058 Sum_probs=195.2
Q ss_pred CCCCCCCcceeecccCCCcc----EEEEEeCCeEEEEECCCC-ceeeeeeecCCCCCceEEEEcCCCC-EEEEEecCC--
Q 040533 38 DAPNLRNDYYSNMMDWGRNN----ILAIALGLELYLWKQENG-EVQKLLKVTGEDDFPTSISWSQDAK-TLAVGYMAS-- 109 (364)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg-- 109 (364)
..|.-.-.+-+.++-|-..+ -+..+....|.+|+..++ +.....+...|+.+|..+.+.||.. ++.++-.+=
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 111 (356)
T 2w18_A 32 KNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEI 111 (356)
T ss_dssp CCCCSSCEEEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSE
T ss_pred cCCCCCeEEEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccc
Confidence 34433333335666675432 566778899999999887 2345666778999999999999654 333322111
Q ss_pred -cEEEEecCCc----ceeeeeecCCCcEEEEEeecCCCCEEEEee--CCCcEEEEEcccCcceeeeeecccCcEEEEEEc
Q 040533 110 -KLQLWDAETS----KLIRNLEGHDKRVATASWNHWNGHILTSGS--QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWS 182 (364)
Q Consensus 110 -~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 182 (364)
.|+..-+... .....-.+|...|..+ + +++++.+++ .|+.|++|++......+..+..|...+..++|+
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNIKAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFA 187 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEEEEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEE
T ss_pred cceEEEEECCCccccccEEEeCCCeEEEEec---C-CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEee
Confidence 1111111111 1111112344444443 4 666666644 599999999966555677778899999999999
Q ss_pred C---CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccc---cceeEEEEccCCCcEE-----------EeecCCCCCeE
Q 040533 183 N---EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHR---AAVKALAWCPYQFNVL-----------ASGGGTQDGCI 245 (364)
Q Consensus 183 ~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~-----------~~~~g~~d~~i 245 (364)
+ ++.+|++++.|++|++||++++ +.++++.+|. ..+.+++|+|++..++ ++| +.|++|
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TG---k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSG--s~D~tI 262 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTG---QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLR--SPVFQL 262 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTC---CEEEEEECCC---CCCEEEEEEETTEEEEEEC--------------CCEEE
T ss_pred ccCCCCceEEEecCCCcEEEEECCCC---cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeecc--CCCcEE
Confidence 9 7799999999999999998775 4577776543 3577789999986543 344 489999
Q ss_pred EEEECCCCeEEEEEe-----cC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccccee-EEee
Q 040533 246 KIWNVQKGTCIHSVD-----TK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRIL-ELSQ 318 (364)
Q Consensus 246 ~i~d~~~~~~~~~~~-----~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~-~i~~ 318 (364)
++||..+++.+..+. .+ ..+.+.. ..+..++++. .|++|+|||+.+++.+.++.+|...+. .++|
T Consensus 263 klWd~~tgk~l~v~~~~~p~Gh~~~~lsg~--~sg~~lASgS------~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf 334 (356)
T 2w18_A 263 IVINPKTTLSVGVMLYCLPPGQAGRFLEGD--VKDHCAAAIL------TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW 334 (356)
T ss_dssp EEEETTTTEEEEEEEECCCTTCCCCEEEEE--EETTEEEEEE------TTSCEEEEETTTCSEEEEECCC--CCCCEEEE
T ss_pred EEEECCCCEEEEEEEeeccCCCcceeEccc--cCCCEEEEEc------CCCcEEEEECCCCcEEEEecCCCCCeEEEEEE
Confidence 999999999887652 11 2232222 2356677664 499999999999999999999887655 5899
Q ss_pred cCCCCEEEEEeCCCcEEEEEe
Q 040533 319 SPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 319 ~~~~~~l~~~~~dg~i~vw~~ 339 (364)
+|||++|++|+.|++|+|||+
T Consensus 335 SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999996
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.6e-33 Score=243.15 Aligned_cols=265 Identities=11% Similarity=0.135 Sum_probs=183.2
Q ss_pred CCCceEEEEc---CCCCEEEEEecCCcEEEEecCCcc----------eeeeeecCCCcEEEEEee---------------
Q 040533 87 DDFPTSISWS---QDAKTLAVGYMASKLQLWDAETSK----------LIRNLEGHDKRVATASWN--------------- 138 (364)
Q Consensus 87 ~~~v~~~~~s---~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~~~v~~~~~~--------------- 138 (364)
+....++.|. |++..+++++.++.|.+|+..... .+..+ .+..++..+.|+
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcc
Confidence 3456677774 333334444457889999763211 11111 133344444443
Q ss_pred ----cCCCCEEEEeeCCCcEEEEEcccCcce----eeeeecccCcEEEEEEcC--------CCCEEEEEeCCCeEEEEeC
Q 040533 139 ----HWNGHILTSGSQDKSIINHDVRVSNNV----TSRINAHTAEVCGLKWSN--------EGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 139 ----~~~~~~l~~~~~dg~i~~~d~~~~~~~----~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~iwd~ 202 (364)
|.++.+|++++.|++|++||.+.+... ...+.+|.+.|++++|+| ++++|++++.|++|++||+
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 225668999999999999999877532 334678999999999998 7889999999999999998
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe----------------------
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD---------------------- 260 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~---------------------- 260 (364)
+.. ..+..+..|..++.+++|+|++..++++++ .|++|++||+++++......
T Consensus 174 ~~~---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 248 (393)
T 4gq1_A 174 TDE---GPILAGYPLSSPGISVQFRPSNPNQLIVGE--RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC 248 (393)
T ss_dssp ETT---EEEEEEEECSSCEEEEEEETTEEEEEEEEE--TTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred CCC---ceeeeecCCCCCcEEEEECCCCCceEEecC--CCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence 654 346667788999999999999877888877 89999999999876543321
Q ss_pred ----cCCCeEEEEEc-CCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC---------------
Q 040533 261 ----TKAQICGLEWN-RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP--------------- 320 (364)
Q Consensus 261 ----~~~~v~~~~~~-~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~--------------- 320 (364)
+...+.++.|+ ++++.++++.. |+.+++||+..++....+..|...+..+.+.|
T Consensus 249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~------d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
T 4gq1_A 249 HSSGIASSLANVRWIGSDGSGILAMCK------SGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC 322 (393)
T ss_dssp ---CCSSSCSEEEEETTTTCEEEEECT------TSEEEEEEC-------------------CCSCSEEEECSSCCSSCCE
T ss_pred ecccccccceeeeeecCCCCEEEEEeC------CCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEE
Confidence 22456778876 78999988754 99999999988877766666555444443333
Q ss_pred -----CCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 321 -----DGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 321 -----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++.++++|+.||.|++||+.+++....+..|..+|.+|+|||.
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspd 370 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQD 370 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTT
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCC
Confidence 3446788899999999999999998888899999999999995
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=4.7e-30 Score=223.64 Aligned_cols=247 Identities=11% Similarity=0.099 Sum_probs=203.6
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEE-EEeeCCCcEEEEEcccCcceeeeeecccCcEEE
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHIL-TSGSQDKSIINHDVRVSNNVTSRINAHTAEVCG 178 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~ 178 (364)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+| +++++ ++++.|+.|++||+.+++. ...+..+ ..+.+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~-~~v~~ 78 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNV-IATVPAG-SSPQG 78 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEE-EEEEECS-SSEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECC-CCCEEEEECCCCCeEEEEECCCCeE-EEEEECC-CCccc
Confidence 467888899999999999999998888664 589999999 88765 6777999999999987764 4444444 48999
Q ss_pred EEEcCCCCEEEEE-eCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE
Q 040533 179 LKWSNEGNLLASG-GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH 257 (364)
Q Consensus 179 ~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~ 257 (364)
++|+|++++|+++ +.++.|++||+.+.+ .+..+.. ...+.+++|+|+++.++++++ .++.|++||+.+++.+.
T Consensus 79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~---~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNT---VAGTVKT-GKSPLGLALSPDGKKLYVTNN--GDKTVSVINTVTKAVIN 152 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEEC-SSSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEE
T ss_pred eEECCCCCEEEEEECCCCEEEEEECCCCe---EEEEEeC-CCCcceEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEE
Confidence 9999999977654 467999999987643 3555543 456899999999987877765 79999999999999999
Q ss_pred EEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEe---CCCcE
Q 040533 258 SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA---ADETL 334 (364)
Q Consensus 258 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~i 334 (364)
.+..+..+..++|+|+++.++++. +.++.|++||+.+++.+..+. +...+.+++|+|+|++|++++ .++.|
T Consensus 153 ~~~~~~~~~~~~~~~dg~~l~~~~-----~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v 226 (391)
T 1l0q_A 153 TVSVGRSPKGIAVTPDGTKVYVAN-----FDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTV 226 (391)
T ss_dssp EEECCSSEEEEEECTTSSEEEEEE-----TTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred EEecCCCcceEEECCCCCEEEEEe-----CCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcE
Confidence 998888899999999999885432 348999999999998877775 456789999999999999888 68999
Q ss_pred EEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 335 RFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 335 ~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
++||+.+++.+..+..|. .+.+++|+|.
T Consensus 227 ~~~d~~~~~~~~~~~~~~-~~~~~~~s~d 254 (391)
T 1l0q_A 227 SMIDTGTNKITARIPVGP-DPAGIAVTPD 254 (391)
T ss_dssp EEEETTTTEEEEEEECCS-SEEEEEECTT
T ss_pred EEEECCCCeEEEEEecCC-CccEEEEccC
Confidence 999999888777776654 5789999985
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.98 E-value=5.7e-29 Score=224.34 Aligned_cols=297 Identities=9% Similarity=0.085 Sum_probs=228.3
Q ss_pred cCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec--CCcceeeeeec
Q 040533 52 DWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA--ETSKLIRNLEG 127 (364)
Q Consensus 52 ~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~~ 127 (364)
.+++++ +++...++.|.+||..+++....+.. ++. +..++|+|||++|++++.|+.|.+||+ .+++.+..+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~- 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK- 219 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC-STT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec-Ccc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-
Confidence 356654 33444678999999999987655543 333 889999999999999999999999999 8888888887
Q ss_pred CCCcEEEEEeecC---CCCEEEEee-CCCcEEEEEcccCcceeeeeec----------cc-CcEEEEEEcCCCC-EEEEE
Q 040533 128 HDKRVATASWNHW---NGHILTSGS-QDKSIINHDVRVSNNVTSRINA----------HT-AEVCGLKWSNEGN-LLASG 191 (364)
Q Consensus 128 ~~~~v~~~~~~~~---~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~-~l~~~ 191 (364)
+...+..++|+|. +++++++++ .+++|.+||..+.+. +..+.. |. ..+..+.++|++. ++++.
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 5567899999982 566677666 589999999987764 343332 22 3789999999765 55666
Q ss_pred eCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-----CCeE
Q 040533 192 GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-----AQIC 266 (364)
Q Consensus 192 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-----~~v~ 266 (364)
..++.|.+||+....... +..+ .+...+..+.|+|+++++++++. .+++|.+||+.+++++..+... +...
T Consensus 299 ~~~g~i~vvd~~~~~~l~-~~~i-~~~~~~~~~~~spdg~~l~va~~--~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~ 374 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNLT-VTSI-GAAPFLHDGGWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 374 (543)
T ss_dssp TTTTEEEEEECTTSSSCE-EEEE-ECCSSCCCEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred CCCCeEEEEEecCCCcce-eEEe-ccCcCccCceECCCCCEEEEEec--CCCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence 788999999987754322 2233 35567889999999988887765 6899999999999999888742 2222
Q ss_pred EEEEcCC-ccceeeeccCCccCCCCeEEEeeCCC-------CceeeeccccccceeEEeecCCCCEEEEEe-------CC
Q 040533 267 GLEWNRH-HKEILSGHGFSSSGDGQKLCLWKYPH-------MTKWGELQHQTSRILELSQSPDGLTVVSAA-------AD 331 (364)
Q Consensus 267 ~~~~~~~-~~~l~~~~~~~~~~~~~~i~i~d~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-------~d 331 (364)
.+ ++|+ +..++++. ..++.|.+||..+ ++.+.++..|...+..++++|+|++|++++ .+
T Consensus 375 ~~-~~p~~g~~~~s~~-----~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~ 448 (543)
T 1nir_A 375 NF-VHPKYGPVWSTSH-----LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARIS 448 (543)
T ss_dssp EE-EETTTEEEEEEEB-----SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHH
T ss_pred cc-CCCCCccEEEecc-----CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccC
Confidence 22 4677 55555542 1279999999998 899999999988889999999999999987 27
Q ss_pred CcEEEEEeeCCCCC-cce--------eccCCceeeeeeccC
Q 040533 332 ETLRFWEAFGPSGS-GDF--------VSHLDGLLSLKVSPI 363 (364)
Q Consensus 332 g~i~vw~~~~~~~~-~~~--------~~~~~~v~~~~~sp~ 363 (364)
++|.+||+.+.+.. ..+ ..+...+..++|+|.
T Consensus 449 ~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 489 (543)
T 1nir_A 449 QSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR 489 (543)
T ss_dssp TCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSS
T ss_pred ceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCC
Confidence 79999999998876 333 245678999999985
No 128
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=4.7e-29 Score=234.98 Aligned_cols=300 Identities=11% Similarity=0.065 Sum_probs=223.1
Q ss_pred eecccCCCcc--EEEEEe-CC-----eEEEEECCCCceeeeeeecCCC----------------------CCceEEEEcC
Q 040533 48 SNMMDWGRNN--ILAIAL-GL-----ELYLWKQENGEVQKLLKVTGED----------------------DFPTSISWSQ 97 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~-~~-----~i~iw~~~~~~~~~~~~~~~~~----------------------~~v~~~~~s~ 97 (364)
+..++|+|++ ++.++. ++ .|++||+.+++...+.....+. ..+.+++|||
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 6778999864 455555 67 8999999999876666543333 3488999999
Q ss_pred CCCEEEEEecCCcEEEEecCCcc--eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCc
Q 040533 98 DAKTLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAE 175 (364)
Q Consensus 98 ~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 175 (364)
||++|++++. +.|++||+.++. ....+..|...+..++|+| ++++|+.++. +.|++||+.++.. ......+...
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~~-~~i~~~d~~~g~~-~~~~~~~~~~ 194 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIRG-RNLWVIDLASGRQ-MQLTADGSTT 194 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEET-TEEEEEETTTTEE-EECCCCCCSS
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEeC-CcEEEEecCCCCE-EEeccCCccc
Confidence 9999999975 999999999873 4555667888899999999 9999998874 6899999987653 3322233222
Q ss_pred ----------------EEEEEEcCCCCEEEEEeCCC---------------------------------eEEEEeCCC-C
Q 040533 176 ----------------VCGLKWSNEGNLLASGGDDN---------------------------------LVHVWDHSK-M 205 (364)
Q Consensus 176 ----------------v~~~~~~~~~~~l~~~~~d~---------------------------------~i~iwd~~~-~ 205 (364)
+..++|+|||++|++++.|+ .|.+||+.. .
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 47799999999999987665 788999876 4
Q ss_pred CCCcceEEec--ccccceeEEEEccCCCcEEEeec--CCCCCeEEEEECCCCeEEEEEecCC-----CeEEEEEcCCccc
Q 040533 206 SSSKCLHRFR--DHRAAVKALAWCPYQFNVLASGG--GTQDGCIKIWNVQKGTCIHSVDTKA-----QICGLEWNRHHKE 276 (364)
Q Consensus 206 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~--g~~d~~i~i~d~~~~~~~~~~~~~~-----~v~~~~~~~~~~~ 276 (364)
.. ..... .+...+..++| |+++.++++.. +..+..|++||+.+++....+..+. .+..++|+|+|++
T Consensus 275 ~~---~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~ 350 (741)
T 2ecf_A 275 QT---QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSI 350 (741)
T ss_dssp CC---EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCE
T ss_pred ce---EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeE
Confidence 32 22221 46778999999 99987776542 2246789999999998877665432 4568999999997
Q ss_pred eeeeccCCccCCCCeEEEeeCC-CCceeeeccccccceeEE-eecCCCCEEEE-EeCCC--cEEEEEeeC-CCCCcceec
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYP-HMTKWGELQHQTSRILEL-SQSPDGLTVVS-AAADE--TLRFWEAFG-PSGSGDFVS 350 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~i~~i-~~~~~~~~l~~-~~~dg--~i~vw~~~~-~~~~~~~~~ 350 (364)
++++. .++.+.+|.+. +++ ...+..|...+..+ .|+|+|+.|+. ++.++ .+++|++.. +.....+..
T Consensus 351 ~~~~~------~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~ 423 (741)
T 2ecf_A 351 LWSSE------RTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK 423 (741)
T ss_dssp EEEEC------TTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC
T ss_pred EEEec------CCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc
Confidence 77663 37766676654 344 77777788888887 59999987754 55555 899999985 444555554
Q ss_pred cCCceeeeeeccC
Q 040533 351 HLDGLLSLKVSPI 363 (364)
Q Consensus 351 ~~~~v~~~~~sp~ 363 (364)
...+.+++|||.
T Consensus 424 -~~~~~~~~~spd 435 (741)
T 2ecf_A 424 -APGMHSASFARN 435 (741)
T ss_dssp -SCSEEEEEECTT
T ss_pred -CCCceEEEECCC
Confidence 667889999985
No 129
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.97 E-value=1.9e-28 Score=209.48 Aligned_cols=289 Identities=11% Similarity=0.171 Sum_probs=203.0
Q ss_pred EeCCeEEEEECC-CCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC-CcEEEEecC--Ccc--eeeeeecCCCcEEEE
Q 040533 62 ALGLELYLWKQE-NGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA-SKLQLWDAE--TSK--LIRNLEGHDKRVATA 135 (364)
Q Consensus 62 ~~~~~i~iw~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iw~~~--~~~--~~~~~~~~~~~v~~~ 135 (364)
+.++.|++|++. +++......+ .+...+.+++|+|++++|++++.+ +.|.+|++. +++ .+..+..+. .+..+
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 89 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHI 89 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEE
T ss_pred CCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEE
Confidence 468999999985 3433333333 567789999999999999888876 899999997 554 334455433 78899
Q ss_pred EeecCCCCEEEEee-CCCcEEEEEcccCc--ceeeeeecccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCCcce
Q 040533 136 SWNHWNGHILTSGS-QDKSIINHDVRVSN--NVTSRINAHTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSSSKCL 211 (364)
Q Consensus 136 ~~~~~~~~~l~~~~-~dg~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~ 211 (364)
+|+| ++++|++++ .++.|.+||+..+. .....+. ....+.+++|+|+++++++++ .++.|.+||+.........
T Consensus 90 ~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 167 (343)
T 1ri6_A 90 STDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ 167 (343)
T ss_dssp EECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred EEcC-CCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeee
Confidence 9999 888776665 48899999995221 1233333 334588999999999888877 8999999998762221111
Q ss_pred E--Eecc-cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC--CeE--EEEEe---c----CCCeEEEEEcCCccce
Q 040533 212 H--RFRD-HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK--GTC--IHSVD---T----KAQICGLEWNRHHKEI 277 (364)
Q Consensus 212 ~--~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~--~~~~~---~----~~~v~~~~~~~~~~~l 277 (364)
. .... ....+..++|+|+++.+++++. .++.|.+||+.. ++. ...+. . ...+..++|+|+++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~--~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l 245 (343)
T 1ri6_A 168 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNE--LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 245 (343)
T ss_dssp EEEEEECSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred cccccccCCCCCcceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE
Confidence 1 2222 3346788999999987877765 689999999953 432 22332 1 1346689999999988
Q ss_pred eeeccCCccCCCCeEEEeeCC----CCceeeeccccccceeEEeecCCCCEEEEEe-CCCcEEEEEeeC--CCC--Ccce
Q 040533 278 LSGHGFSSSGDGQKLCLWKYP----HMTKWGELQHQTSRILELSQSPDGLTVVSAA-ADETLRFWEAFG--PSG--SGDF 348 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~vw~~~~--~~~--~~~~ 348 (364)
+++. ..++.|.+||+. ..+.+..+..+.. +..++|+|+|++|++++ .++.|.+|++.. ++. +..+
T Consensus 246 ~v~~-----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~ 319 (343)
T 1ri6_A 246 YACD-----RTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRY 319 (343)
T ss_dssp EEEE-----TTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEe-----cCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccc
Confidence 7543 238999999998 2344444554444 88999999999888887 689999997764 322 2223
Q ss_pred eccCCceeeeeeccC
Q 040533 349 VSHLDGLLSLKVSPI 363 (364)
Q Consensus 349 ~~~~~~v~~~~~sp~ 363 (364)
.. .....+++|.|.
T Consensus 320 ~~-g~~p~~i~~~~~ 333 (343)
T 1ri6_A 320 AV-GQGPMWVVVNAH 333 (343)
T ss_dssp EC-SSSCCEEEEEEE
T ss_pred cc-CCCCeeEEEEcc
Confidence 22 356778888774
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.97 E-value=5.5e-28 Score=205.72 Aligned_cols=273 Identities=11% Similarity=0.051 Sum_probs=203.2
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec-CCcEEEEecCCcce-eeeeecCCCcEEEE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM-ASKLQLWDAETSKL-IRNLEGHDKRVATA 135 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~-~~~~~~~~~~v~~~ 135 (364)
+++...++.|.+||..+++...... .+...+ +++|+|+++++++++. ++.|.+||+.+++. ...+..+..+..++
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 89 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEILNQIT--LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADV 89 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEE--CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCE
T ss_pred EEEecCCCeEEEEeCcccceeeeEE--ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccce
Confidence 4445567999999999998766554 345556 9999999997776665 88999999999987 77777666666669
Q ss_pred EeecCCCCEEEEeeCCC---cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEE-eCCCe-EEEEeCCCCCCCcc
Q 040533 136 SWNHWNGHILTSGSQDK---SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASG-GDDNL-VHVWDHSKMSSSKC 210 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~-i~iwd~~~~~~~~~ 210 (364)
+|+| ++++++++..++ .|.+||+.+++. ...+. ......+++|+|+|++++++ ..++. |.+|++........
T Consensus 90 ~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~ 166 (331)
T 3u4y_A 90 DITP-DDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD 166 (331)
T ss_dssp EECT-TSSEEEECCCSSSSCEEEEEETTTTEE-EEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred EECC-CCCEEEEecCCCCcccEEEEECCCCCe-EEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence 9999 999888665553 899999987664 44443 34456899999999855554 55578 99999875322110
Q ss_pred e-EEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE---EEEEecCCCeEEEEEcCCccceeeeccCCcc
Q 040533 211 L-HRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC---IHSVDTKAQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 211 ~-~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
. ............++|+|+++.+++++. .++.|.+||+.+++. +..+.....+..++|+|+|++++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~----- 239 (331)
T 3u4y_A 167 TGQEFISGGTRPFNITFTPDGNFAFVANL--IGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLT----- 239 (331)
T ss_dssp EEEEEECSSSSEEEEEECTTSSEEEEEET--TTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEEC-----
T ss_pred cCCccccCCCCccceEECCCCCEEEEEeC--CCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEE-----
Confidence 1 111123455789999999987888765 689999999999888 88888888889999999999877653
Q ss_pred CCCCeEEEeeCCCCce--eeecccc----ccc---eeEEeecCCCCEEEEEe-CCCcEEEEEeeCCC
Q 040533 287 GDGQKLCLWKYPHMTK--WGELQHQ----TSR---ILELSQSPDGLTVVSAA-ADETLRFWEAFGPS 343 (364)
Q Consensus 287 ~~~~~i~i~d~~~~~~--~~~~~~~----~~~---i~~i~~~~~~~~l~~~~-~dg~i~vw~~~~~~ 343 (364)
..++.|.+||+.+++. +..+..+ ... ...++|+|+|++|++++ .++.|.+||+....
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 2377899999998876 3332221 222 24589999999886655 46799999997654
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=1.2e-27 Score=209.59 Aligned_cols=248 Identities=12% Similarity=0.042 Sum_probs=194.7
Q ss_pred cEEEEEeC------CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC---cEEEEecCCcceeeeeec
Q 040533 57 NILAIALG------LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS---KLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 57 ~~~~~~~~------~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~ 127 (364)
.++.++.+ +.|++||..++.. ..+.+|...+.+++|+|||++|++++.++ .|++||+.+++.. .+..
T Consensus 145 ~l~~~s~~~~~~~~~~i~i~d~~g~~~---~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~ 220 (415)
T 2hqs_A 145 RIAYVVQTNGGQFPYELRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS 220 (415)
T ss_dssp EEEEEEECSSSSCCEEEEEEETTSCSC---EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEEC
T ss_pred EEEEEEecCCCCccceEEEEcCCCCCC---EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eeec
Confidence 45556554 7999999986543 33447888999999999999999998775 9999999988765 4666
Q ss_pred CCCcEEEEEeecCCCCEEE-EeeCCCc--EEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CC--eEEEEe
Q 040533 128 HDKRVATASWNHWNGHILT-SGSQDKS--IINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DN--LVHVWD 201 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~-~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd 201 (364)
|...+.+++|+| +++.|+ +++.++. |++||+.+++ ...+..|...+.+++|+|+|+.|++++. ++ .|++||
T Consensus 221 ~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d 297 (415)
T 2hqs_A 221 FPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 297 (415)
T ss_dssp CSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCC--EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence 888999999999 888777 6666655 9999998765 3556678889999999999999988876 44 678888
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeec
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
+.... ...+..+...+.+++|+|+++.+++++....+..|.+||+.+++.. .+..+..+.+++|+|+|+.|+.+.
T Consensus 298 ~~~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s 372 (415)
T 2hqs_A 298 INGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSS 372 (415)
T ss_dssp TTSSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEE
T ss_pred CCCCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEE
Confidence 77643 3444556678899999999977766653111368999999988774 344445899999999999988775
Q ss_pred cCCccCCCC---eEEEeeCCCCceeeeccccccceeEEeecCCCC
Q 040533 282 GFSSSGDGQ---KLCLWKYPHMTKWGELQHQTSRILELSQSPDGL 323 (364)
Q Consensus 282 ~~~~~~~~~---~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~ 323 (364)
. ++ .|++||+. ++....+..|.+.|.+++|+|...
T Consensus 373 ~------~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 373 S------QGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp E------ETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred c------CCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 3 33 79999986 566778889999999999999653
No 132
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.97 E-value=8.9e-29 Score=232.45 Aligned_cols=303 Identities=11% Similarity=0.120 Sum_probs=214.9
Q ss_pred eecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCC---CceEEEEcCCCCEEEEEecC---------CcEEEE
Q 040533 48 SNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDD---FPTSISWSQDAKTLAVGYMA---------SKLQLW 114 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d---------g~i~iw 114 (364)
...++|+|++ +++.+.|+.|++||..+++...+.. .|.. .|.+++|||||++|++++.+ +.|.+|
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~--~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIE--GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEEC--TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEec--cccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 5678899864 5555778999999999998755443 4443 49999999999999999764 788899
Q ss_pred ecCCcceeeeee---cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCc----------------
Q 040533 115 DAETSKLIRNLE---GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAE---------------- 175 (364)
Q Consensus 115 ~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---------------- 175 (364)
|+.+++. ..+. .|...+..++|+| +++.|+.++. +.|++||+.+++. ......+...
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEIL 172 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred ECCCCce-EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccceeEEEEec
Confidence 9998876 3333 3444588999999 9999998886 7999999987664 3333333332
Q ss_pred --EEEEEEcCCCCEEEEEeCCC----------------------------------eEEEEeCCCCCCCcceEEeccc--
Q 040533 176 --VCGLKWSNEGNLLASGGDDN----------------------------------LVHVWDHSKMSSSKCLHRFRDH-- 217 (364)
Q Consensus 176 --v~~~~~~~~~~~l~~~~~d~----------------------------------~i~iwd~~~~~~~~~~~~~~~~-- 217 (364)
+.+++|+|||+.|++++.++ .|++||+..... ...+..+
T Consensus 173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~---~~~l~~~~~ 249 (723)
T 1xfd_A 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH---DLEMMPPDD 249 (723)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC---CEECCCCCC
T ss_pred cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce---eEEeeCCcc
Confidence 37899999999999987543 799999876542 2334332
Q ss_pred ----ccceeEEEEccCCCcEEEeec-CCCCCeEEEEECCCCeEEEEEec--CCCe----EEEEEcCCccceeeeccCCcc
Q 040533 218 ----RAAVKALAWCPYQFNVLASGG-GTQDGCIKIWNVQKGTCIHSVDT--KAQI----CGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 218 ----~~~v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~~~~~~~~--~~~v----~~~~~~~~~~~l~~~~~~~~~ 286 (364)
...+..++|+|+|+.+++... +..+..|++||+.+++....+.. ...+ ..++|+|+|+.++....
T Consensus 250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---- 325 (723)
T 1xfd_A 250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA---- 325 (723)
T ss_dssp GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE----
T ss_pred CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe----
Confidence 567899999999975544321 12357899999999987766532 2333 37899999998876411
Q ss_pred CCCC------eEEEeeC-CCCce--eeeccccccceeE-EeecCCCCEEEEEeCC---CcEEEEEeeCCC--CCcceec-
Q 040533 287 GDGQ------KLCLWKY-PHMTK--WGELQHQTSRILE-LSQSPDGLTVVSAAAD---ETLRFWEAFGPS--GSGDFVS- 350 (364)
Q Consensus 287 ~~~~------~i~i~d~-~~~~~--~~~~~~~~~~i~~-i~~~~~~~~l~~~~~d---g~i~vw~~~~~~--~~~~~~~- 350 (364)
..++ .|++||. ..++. ...+..+...+.. ++|+|||+.|+..+.+ +.+++|++.... ....+..
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 405 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD 405 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT
T ss_pred cccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc
Confidence 2245 5777883 44441 4555544444544 6999999999766555 789999997543 2333433
Q ss_pred --cCCceeeeeeccC
Q 040533 351 --HLDGLLSLKVSPI 363 (364)
Q Consensus 351 --~~~~v~~~~~sp~ 363 (364)
|...+..++|||.
T Consensus 406 ~~~~~~~~~~~~spd 420 (723)
T 1xfd_A 406 LVENCTYFSASFSHS 420 (723)
T ss_dssp SSSSCCCCEEEECTT
T ss_pred ccCCCCeEEEEECCC
Confidence 5677899999985
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=6.6e-28 Score=217.43 Aligned_cols=293 Identities=11% Similarity=0.083 Sum_probs=223.0
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEEC--CCCceeeeeeecCCCCCceEEEEcC----CCCEEEEEec-CCcEEEEecCC
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQ--ENGEVQKLLKVTGEDDFPTSISWSQ----DAKTLAVGYM-ASKLQLWDAET 118 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~-dg~i~iw~~~~ 118 (364)
+..++++|++ +++++.++.|.+||+ .+++....+ . +...+..++|+| ||++|++++. +++|.|||..+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i--~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t 257 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI--K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 257 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE--E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE--e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence 4566778764 667778899999999 777654433 2 355689999999 9999999884 89999999999
Q ss_pred cceeeeeecC-----------CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCE
Q 040533 119 SKLIRNLEGH-----------DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL 187 (364)
Q Consensus 119 ~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 187 (364)
++.+..+..+ ...+..+.++|....++++...++.|.+||+.+.+.+......+...+..++|+|++++
T Consensus 258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~ 337 (543)
T 1nir_A 258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRY 337 (543)
T ss_dssp CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCE
T ss_pred cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCE
Confidence 9988887642 23789999999555677778889999999998765433222245667888999999997
Q ss_pred EEEEe-CCCeEEEEeCCCCCCCcceEEecc----cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-------CeE
Q 040533 188 LASGG-DDNLVHVWDHSKMSSSKCLHRFRD----HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-------GTC 255 (364)
Q Consensus 188 l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-------~~~ 255 (364)
+++++ .+++|.+||..+. +.+..+.. |.+....+ ++|++..+++++. ..|++|.+||+.+ +++
T Consensus 338 l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~-~~d~~V~v~d~~~~~~~~~~~~~ 412 (543)
T 1nir_A 338 FMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH-LGDGSISLIGTDPKNHPQYAWKK 412 (543)
T ss_dssp EEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSE
T ss_pred EEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc-CCCCCccEEEecc-CCCceEEEEEeCCCCCchhcCeE
Confidence 76655 5889999998765 34555442 44333333 4777557777753 1479999999998 899
Q ss_pred EEEEecC-CCeEEEEEcCCccceeeeccCCccC---CCCeEEEeeCCCCcee-eec--------cccccceeEEeecCCC
Q 040533 256 IHSVDTK-AQICGLEWNRHHKEILSGHGFSSSG---DGQKLCLWKYPHMTKW-GEL--------QHQTSRILELSQSPDG 322 (364)
Q Consensus 256 ~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~---~~~~i~i~d~~~~~~~-~~~--------~~~~~~i~~i~~~~~~ 322 (364)
++++..+ ..+..+.++|++++|+++.... . .++.|.+||+.+++.. ..+ ..+...+..+.|+|+|
T Consensus 413 v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~--~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g 490 (543)
T 1nir_A 413 VAELQGQGGGSLFIKTHPKSSHLYVDTTFN--PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 490 (543)
T ss_dssp EEEEECSCSCCCCEECCTTCCEEEECCTTC--SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS
T ss_pred EEEEEcCCCCceEEEcCCCCCcEEEecCCC--CCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC
Confidence 9999876 4678899999999999874211 1 1679999999998877 333 3456789999999999
Q ss_pred CEEEEEe-----CCCcEEEEEeeCCCCCcceec
Q 040533 323 LTVVSAA-----ADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 323 ~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~ 350 (364)
+.|+++. .|+.|.|||..+++.++++..
T Consensus 491 ~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 491 DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 9988662 479999999999988777764
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.97 E-value=2.9e-28 Score=203.67 Aligned_cols=261 Identities=10% Similarity=0.074 Sum_probs=195.0
Q ss_pred EeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC-cceeeeeecC-CCcEEEEEeec
Q 040533 62 ALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET-SKLIRNLEGH-DKRVATASWNH 139 (364)
Q Consensus 62 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~-~~~v~~~~~~~ 139 (364)
+.++.|++||+.+++...+. .|...|.+++|+|++++|++++ ++.|.+||+.+ ++.......+ ...+.+++|+|
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~---~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVW---QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEE---EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CcceeEEEEeCCCCceeeec---cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 35789999999998865433 5788999999999999999986 88999999999 8777666555 36789999999
Q ss_pred CCCCEEEEee--CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCCcceEEecc
Q 040533 140 WNGHILTSGS--QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLA-SGGDDNLVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 140 ~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~ 216 (364)
++++|++++ .++...+|.++........+..+ ..+..++|+|+++.|+ +++.++.+.+|+++... .....+..
T Consensus 95 -dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~ 170 (297)
T 2ojh_A 95 -DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS--GVETRLTH 170 (297)
T ss_dssp -TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT--CCEEECCC
T ss_pred -CCCEEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCC--CcceEccc
Confidence 999999988 44556666654332223334333 3488999999999877 77789999999864321 22455666
Q ss_pred cccceeEEEEccCCCcEEEeecCCCCCeEEEEECC-CCeEEEEEec-CCCeEEEEEcCCccceeeeccCCcc-----CCC
Q 040533 217 HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ-KGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSS-----GDG 289 (364)
Q Consensus 217 ~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~-----~~~ 289 (364)
+...+.+++|+|+++.+++++. .++.+++|++. .+.....+.. ...+..+.|+|++++++.+..-... ..+
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 248 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSS--RTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD 248 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEEC--TTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred CCCccccceECCCCCEEEEEec--CCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence 7788999999999977777654 68888999875 4444445443 4568899999999998877531000 012
Q ss_pred CeEEEeeCCCCcee--eeccccccceeEEeecCCCCEEEEEeCCC
Q 040533 290 QKLCLWKYPHMTKW--GELQHQTSRILELSQSPDGLTVVSAAADE 332 (364)
Q Consensus 290 ~~i~i~d~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 332 (364)
+.|++||+.+++.. ..+..|...+..++|+|+|++|++++.|.
T Consensus 249 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 249 VRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 67999999887653 34447788899999999999998887654
No 135
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2e-27 Score=195.99 Aligned_cols=262 Identities=14% Similarity=0.117 Sum_probs=183.9
Q ss_pred ceEEEEcCCCC---EEEEEecCCcEEEEecCCc---ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcE---EEEEcc
Q 040533 90 PTSISWSQDAK---TLAVGYMASKLQLWDAETS---KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSI---INHDVR 160 (364)
Q Consensus 90 v~~~~~s~~~~---~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i---~~~d~~ 160 (364)
+.++-|-..+- .+++++ ...|++|+..++ +++.+...|..+|..+.+.|+..+++.++-.+=.+ +..-+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 44555644332 566665 568999999998 88999999999999999999555555544322222 111111
Q ss_pred cC----cceeeeeecccCcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCCCCcceEEecccccceeEEEEcc---CCC
Q 040533 161 VS----NNVTSRINAHTAEVCGLKWSNEGNLLASGG--DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP---YQF 231 (364)
Q Consensus 161 ~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~ 231 (364)
.. .+ .....+|...+..+ ++++++.+++ .|+.|++|++... ++.+..+..|...+..++|+| ++
T Consensus 121 pd~~~~~~-~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~d--G~~~~s~~~~~~~v~~l~fs~~~g~~- 193 (356)
T 2w18_A 121 SDDESEKQ-VLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAED--GGGKENQFLMPPEETILTFAEVQGMQ- 193 (356)
T ss_dssp -----CCE-EEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTT--SCEEEEEEECCCSSCEEEEEEEETST-
T ss_pred CCcccccc-EEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCC--CceeeeeccCCCceeeEEeeccCCCC-
Confidence 11 11 12223455455554 5666666543 5999999998542 345677778999999999988 44
Q ss_pred cEEEeecCCCCCeEEEEECCCCeEEEEEecC----CCeEEEEEcCCccceeeecc------CCccCCCCeEEEeeCCCCc
Q 040533 232 NVLASGGGTQDGCIKIWNVQKGTCIHSVDTK----AQICGLEWNRHHKEILSGHG------FSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~------~~~~~~~~~i~i~d~~~~~ 301 (364)
.++++++ .|++|++||++++++++++..+ ..+.+++|+|+|.+++++.. .++++.|++|++||..+++
T Consensus 194 ~~LaSgS--~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 194 EALLGTT--IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp TEEEEEE--TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred ceEEEec--CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 6777776 8999999999999999999743 34777899999999876542 3567889999999999998
Q ss_pred eeeec-----cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCcee-eeeeccC
Q 040533 302 KWGEL-----QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLL-SLKVSPI 363 (364)
Q Consensus 302 ~~~~~-----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~-~~~~sp~ 363 (364)
.+..+ .+|...+.+..+ ++.++++++.||+|+|||+.+++.+.++.+|.+.+. +++|||.
T Consensus 272 ~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD 337 (356)
T 2w18_A 272 SVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT 337 (356)
T ss_dssp EEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS
T ss_pred EEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC
Confidence 87654 366655554444 478999999999999999999999999999988766 5899995
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.96 E-value=5e-27 Score=219.95 Aligned_cols=281 Identities=13% Similarity=0.124 Sum_probs=206.6
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC-----cce
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET-----SKL 121 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-----~~~ 121 (364)
.+..++|+|++.++++.++.|++||+.+++...+. .+...+.+++|||||++|+++ .++.|++|++.+ ++.
T Consensus 83 ~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~---~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLF---DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp CCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEE---CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred CceeEEECCCCeEEEEECCEEEEEECCCCceEEcc---CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence 47788999988888888999999999988764433 556778999999999999996 689999999998 776
Q ss_pred eeeeecCCCc--------------EEEEEeecCCCCEEEEee---------------------------------CCCcE
Q 040533 122 IRNLEGHDKR--------------VATASWNHWNGHILTSGS---------------------------------QDKSI 154 (364)
Q Consensus 122 ~~~~~~~~~~--------------v~~~~~~~~~~~~l~~~~---------------------------------~dg~i 154 (364)
......+... +.+++|+| ++++|++++ .+..|
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 6544433332 47899999 999999887 34679
Q ss_pred EEEEcccCcceeeee-ecccCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCCCCcceEEeccccc---ceeEEE
Q 040533 155 INHDVRVSNNVTSRI-NAHTAEVCGLKWSNEGNLLASGGDDN-----LVHVWDHSKMSSSKCLHRFRDHRA---AVKALA 225 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~ 225 (364)
.+||+.++....... ..|...+..++|+|||+.|++++.++ .|++||+.++.....+.. ..+.. .+..++
T Consensus 238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV-ETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE-EECSSCCCCCSCCE
T ss_pred EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE-ccCCCeECccCCce
Confidence 999998765322221 24667899999999999999887665 899999876522111211 11222 246789
Q ss_pred Ecc--CCCcEEEeecCCCCCeEEEEECC-CCeEEEEEecC-CCeEE-EEEcCCccceeeeccCCccCCC----CeEEEee
Q 040533 226 WCP--YQFNVLASGGGTQDGCIKIWNVQ-KGTCIHSVDTK-AQICG-LEWNRHHKEILSGHGFSSSGDG----QKLCLWK 296 (364)
Q Consensus 226 ~~~--~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~~-~~v~~-~~~~~~~~~l~~~~~~~~~~~~----~~i~i~d 296 (364)
|+| +++ +++++. .|+.+++|++. ++..+..+..+ ..+.. ++|+|+++.++.+.. .+ ..|+.||
T Consensus 317 ~sp~~dg~-~l~~~~--~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~-----~~~~~~~~l~~~d 388 (706)
T 2z3z_A 317 FLPGSNNQ-FIWQSR--RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFEST-----EASPLERHFYCID 388 (706)
T ss_dssp ECTTCSSE-EEEEEC--TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEES-----SSCTTCBEEEEEE
T ss_pred eecCCCCE-EEEEEc--cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEec-----CCCCceEEEEEEE
Confidence 999 886 556654 78888888876 56666666543 45666 799999998876542 23 3788888
Q ss_pred CCCCceeeeccccccceeEEeecCCCCEEEEEeCC----CcEEEEEeeCCC
Q 040533 297 YPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD----ETLRFWEAFGPS 343 (364)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~vw~~~~~~ 343 (364)
..+++ ...+. +...+.+++|+|||++|+....+ +.|++||+.+++
T Consensus 389 ~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 389 IKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 87765 33443 56678999999999988876443 569999988765
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.96 E-value=1.1e-26 Score=197.95 Aligned_cols=272 Identities=15% Similarity=0.090 Sum_probs=206.3
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCC-CceEEEEcCCCCEEE-EEecCCcEEEEecCCcceeeeeecC-----CC
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDD-FPTSISWSQDAKTLA-VGYMASKLQLWDAETSKLIRNLEGH-----DK 130 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~-----~~ 130 (364)
+++++.++.|.+||..+++....... ++.. .+..++|+|++++++ ++..++.|.+||+.+++.+..+... ..
T Consensus 4 ~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEKMAVDKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 56777899999999999887655543 2222 478999999998765 4556789999999999887766532 12
Q ss_pred cEEEEEeecCCCCEEEEee------------CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040533 131 RVATASWNHWNGHILTSGS------------QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVH 198 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~------------~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 198 (364)
.+..++|+| ++++|++++ .++.|.+||+.+++. ...+.. ...+.+++|+|++++++++ ++.|.
T Consensus 83 ~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~ 157 (337)
T 1pby_B 83 SLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITMLAWARDGSKLYGL--GRDLH 157 (337)
T ss_dssp CTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred cccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCcceeEECCCCCEEEEe--CCeEE
Confidence 567899999 898888876 579999999986653 333333 4557889999999988887 68899
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC-----------------------eEEEEECCCCeE
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG-----------------------CIKIWNVQKGTC 255 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~-----------------------~i~i~d~~~~~~ 255 (364)
+||+.+.. ....+..+. ....+.|+|++..+++++. .++ .|.+||+.+++.
T Consensus 158 ~~d~~~~~---~~~~~~~~~-~~~~~~~s~dg~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 158 VMDPEAGT---LVEDKPIQS-WEAETYAQPDVLAVWNQHE--SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp EEETTTTE---EEEEECSTT-TTTTTBCCCBCCCCCCCCT--TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred EEECCCCc---Eeeeeeccc-cCCCceeCCCccEEeeecc--CCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 99987643 344443322 1123378999877766543 333 478999999877
Q ss_pred EEEE---ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCC
Q 040533 256 IHSV---DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE 332 (364)
Q Consensus 256 ~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 332 (364)
. .+ .....+..++|+|++++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++|++++.++
T Consensus 232 ~-~~~~~~~~~~~~~~~~s~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~ 301 (337)
T 1pby_B 232 A-MREVRIMDVFYFSTAVNPAKTRAFGA--------YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALG 301 (337)
T ss_dssp E-EEEEEECSSCEEEEEECTTSSEEEEE--------ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSS
T ss_pred e-EeecCCCCCceeeEEECCCCCEEEEe--------CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCC
Confidence 5 32 233567889999999999887 789999999999888777643 4578999999999999999999
Q ss_pred cEEEEEeeCCCCCcceecc
Q 040533 333 TLRFWEAFGPSGSGDFVSH 351 (364)
Q Consensus 333 ~i~vw~~~~~~~~~~~~~~ 351 (364)
.|.+||+.+++.+..+..+
T Consensus 302 ~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 302 DLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEEEEETTTCCEEEEEECG
T ss_pred cEEEEECcCCcEEEEEEcC
Confidence 9999999998887777644
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.96 E-value=8.5e-26 Score=193.82 Aligned_cols=268 Identities=15% Similarity=0.143 Sum_probs=207.2
Q ss_pred eecccCCCcc-EEEEEe--------CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEE-ecCCcEEEEecC
Q 040533 48 SNMMDWGRNN-ILAIAL--------GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVG-YMASKLQLWDAE 117 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~~--------~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~ 117 (364)
...+++++++ .+.++. ++.|.+||..+++....... ...+..++|+|++++++++ ..++.|.+||..
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 4567777753 444333 56899999999987666543 3457889999999966555 457899999999
Q ss_pred CcceeeeeecCCC---------cEEEEEeecCCCCEEEEee--CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCC
Q 040533 118 TSKLIRNLEGHDK---------RVATASWNHWNGHILTSGS--QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 118 ~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (364)
+++.+..+..+.. .+.+++|+| +++.+++++ .++.|.+||+.+++. ...+..+...+.+++|+|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKL-KTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEE-EEEECCCCTTCCCCEEETTTT
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCce-EEEecCCCCccceEEECCCCC
Confidence 9998887775432 278899999 888776665 478899999987664 444544555688899999999
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCcceEEecc----cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC
Q 040533 187 LLASGGDDNLVHVWDHSKMSSSKCLHRFRD----HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK 262 (364)
Q Consensus 187 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 262 (364)
++++++.++.|.+||+.+.. .+..+.. +...+..++|+|+++.++++.. .++.|.+||+.+++.+..+...
T Consensus 198 ~l~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~ 272 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADNK---ILSRKKLLDDGKEHFFINISLDTARQRAFITDS--KAAEVLVVDTRNGNILAKVAAP 272 (353)
T ss_dssp EEEEECTTSEEEEEETTTTE---EEEEEECCCSSSCCCEEEEEEETTTTEEEEEES--SSSEEEEEETTTCCEEEEEECS
T ss_pred EEEEEcCCCeEEEEECCCCe---EEEEEEcCCCCCCcccceEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEEEEEcC
Confidence 99999999999999987643 3444332 4456788999999987877765 6799999999999998888765
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCC
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADE 332 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 332 (364)
.+ ..++|+|++++++++. ..++.|.+||..+++.+..+... ..+.+++|+|+|++|+++..++
T Consensus 273 ~~-~~~~~s~dg~~l~v~~-----~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 273 ES-LAVLFNPARNEAYVTH-----RQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp SC-CCEEEETTTTEEEEEE-----TTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred CC-ceEEECCCCCEEEEEE-----CCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 54 6799999999776653 34899999999999988887654 3679999999999887776553
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.96 E-value=9e-27 Score=218.23 Aligned_cols=299 Identities=13% Similarity=0.137 Sum_probs=204.2
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCce--eeeeeecC--------------CCCCceEEEEcCCCCEEEEEecCCcE
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEV--QKLLKVTG--------------EDDFPTSISWSQDAKTLAVGYMASKL 111 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~--~~~~~~~~--------------~~~~v~~~~~s~~~~~l~~~~~dg~i 111 (364)
+..+.|..+.++..+.++ | +||..+++. ..+..... +...|.+++|||| +.++.+ .++.|
T Consensus 28 ~~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i 103 (706)
T 2z3z_A 28 VVGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGL 103 (706)
T ss_dssp CTTCEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEE
T ss_pred CCCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEE
Confidence 344677744566666666 8 999999887 44432211 0156999999999 666666 46999
Q ss_pred EEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc-----CcceeeeeecccCc-----------
Q 040533 112 QLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV-----SNNVTSRINAHTAE----------- 175 (364)
Q Consensus 112 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----~~~~~~~~~~~~~~----------- 175 (364)
++||+.+++... +..+...+.+++|+| +++.|+.+ .++.|++||+.+ ++. ......+...
T Consensus 104 ~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~-~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 104 VGFDMLARKVTY-LFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRA-IAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEETTTTEEEE-EECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCC-EESCSCCBTTEEESSCCGGGC
T ss_pred EEEECCCCceEE-ccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCc-EEeccCCCCCeEcccchhhhh
Confidence 999999886554 444677788999999 99999885 679999999987 553 3322233332
Q ss_pred ---EEEEEEcCCCCEEEEEe---------------------------------CCCeEEEEeCCCCCCCcceEEeccccc
Q 040533 176 ---VCGLKWSNEGNLLASGG---------------------------------DDNLVHVWDHSKMSSSKCLHRFRDHRA 219 (364)
Q Consensus 176 ---v~~~~~~~~~~~l~~~~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~ 219 (364)
+.+++|+|||++|++++ .+..|++||+..... ..+.....+..
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~ 258 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-VYLQTGEPKEK 258 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-EECCCCSCTTC
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-EeeccCCCCce
Confidence 47899999999999987 446899999876432 11111124567
Q ss_pred ceeEEEEccCCCcEEEeec--CCCCCeEEEEECCCCeEEEEE-ec--CC---CeEEEEEcC--CccceeeeccCCccCCC
Q 040533 220 AVKALAWCPYQFNVLASGG--GTQDGCIKIWNVQKGTCIHSV-DT--KA---QICGLEWNR--HHKEILSGHGFSSSGDG 289 (364)
Q Consensus 220 ~v~~~~~~~~~~~~~~~~~--g~~d~~i~i~d~~~~~~~~~~-~~--~~---~v~~~~~~~--~~~~l~~~~~~~~~~~~ 289 (364)
.+.+++|+|+++.++++.. +..+..|.+||+.+++....+ .. .. .+..+.|+| +|++++++.. +
T Consensus 259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~------~ 332 (706)
T 2z3z_A 259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR------D 332 (706)
T ss_dssp EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT------T
T ss_pred eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc------C
Confidence 7899999999976666442 001248999999998433333 21 21 246789999 9998877643 7
Q ss_pred CeEEEeeCC-CCceeeeccccccceeE-EeecCCCCEEEEEeCC-C----cEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 290 QKLCLWKYP-HMTKWGELQHQTSRILE-LSQSPDGLTVVSAAAD-E----TLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 290 ~~i~i~d~~-~~~~~~~~~~~~~~i~~-i~~~~~~~~l~~~~~d-g----~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
+.+++|++. +++.+..+..+...+.. ++|+|+|+.|+.++.+ + .|..||+.+++ ...+ .+...+.+++|||
T Consensus 333 g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l-~~~~~~~~~~~sp 410 (706)
T 2z3z_A 333 GWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL-TPESGMHRTQLSP 410 (706)
T ss_dssp SSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES-CCSSSEEEEEECT
T ss_pred CccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec-cCCCceEEEEECC
Confidence 888888876 67777788778777877 7999999987665544 4 45555555544 3333 4677899999998
Q ss_pred C
Q 040533 363 I 363 (364)
Q Consensus 363 ~ 363 (364)
.
T Consensus 411 d 411 (706)
T 2z3z_A 411 D 411 (706)
T ss_dssp T
T ss_pred C
Confidence 5
No 140
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.96 E-value=1.1e-25 Score=192.72 Aligned_cols=268 Identities=9% Similarity=0.083 Sum_probs=186.9
Q ss_pred CCeEEEEEC--CCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec---CCcEEEEecCCcc--eeeeeecCCCcEEEEE
Q 040533 64 GLELYLWKQ--ENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM---ASKLQLWDAETSK--LIRNLEGHDKRVATAS 136 (364)
Q Consensus 64 ~~~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~ 136 (364)
++.|++|++ .+++...+... .+...+..++|+|||+ |++++. ++.|.+|++.+++ .+..+..+...+..++
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~-~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLL-AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEE-EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeee-eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 345666654 45665443333 4456788999999999 555544 5899999997765 3444455677888999
Q ss_pred eecCCCCEEEEee-CCCcEEEEEcccCcce--eeeeec---------ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 137 WNHWNGHILTSGS-QDKSIINHDVRVSNNV--TSRINA---------HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 137 ~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
|+| ++++|++++ .++.|.+|++...... ...... +...+.+++|+|+++++++...++.|.+||+..
T Consensus 93 ~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 93 VDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred ECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence 999 899888777 7789999999643321 111111 122488999999999666666788999999873
Q ss_pred CCCCcceEEecc-cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC--CeE--EEEEec-C------CCeEEEEEcC
Q 040533 205 MSSSKCLHRFRD-HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK--GTC--IHSVDT-K------AQICGLEWNR 272 (364)
Q Consensus 205 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~--~~~~~~-~------~~v~~~~~~~ 272 (364)
.........+.. ....+..++|+|+++.++++.. .++.|.+|++.. ++. +..+.. . ..+..++|+|
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE--LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 222122222222 2235778999999987777765 689999999874 543 223322 1 3488899999
Q ss_pred CccceeeeccCCccCCCCeEEEeeCCC---CceeeeccccccceeEEeecCCCCEEEEEeCC-CcEEEEEeeC
Q 040533 273 HHKEILSGHGFSSSGDGQKLCLWKYPH---MTKWGELQHQTSRILELSQSPDGLTVVSAAAD-ETLRFWEAFG 341 (364)
Q Consensus 273 ~~~~l~~~~~~~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g~i~vw~~~~ 341 (364)
+|++++++. ..++.|.+|++.. .+.+..+..+...+..++|+|||++|++++.+ +.|.+|++..
T Consensus 250 dG~~l~v~~-----~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 250 DGHFLYVSN-----RGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp TSCEEEEEE-----ETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEEe-----CCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 999886543 2378999999973 34555555666678999999999998888764 8999997653
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=2.5e-26 Score=216.33 Aligned_cols=264 Identities=10% Similarity=0.030 Sum_probs=202.0
Q ss_pred CCCceEEEEcCCCCEEEEEec-CC-----cEEEEecCCcceeeeeecCCC------------------------cEEEEE
Q 040533 87 DDFPTSISWSQDAKTLAVGYM-AS-----KLQLWDAETSKLIRNLEGHDK------------------------RVATAS 136 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~-dg-----~i~iw~~~~~~~~~~~~~~~~------------------------~v~~~~ 136 (364)
...+.+++|||||++|++++. |+ .|++||+.+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999988 88 899999999987766654432 378999
Q ss_pred eecCCCCEEEEeeCCCcEEEEEcccCc--ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEe
Q 040533 137 WNHWNGHILTSGSQDKSIINHDVRVSN--NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRF 214 (364)
Q Consensus 137 ~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 214 (364)
|+| ++++|++++. +.|++||+.++. . ...+..+...+..++|+|||++|++++ ++.|++||+..+.. ....
T Consensus 116 ~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~-~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~---~~~~ 188 (741)
T 2ecf_A 116 WSP-DAQRLLFPLG-GELYLYDLKQEGKAA-VRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ---MQLT 188 (741)
T ss_dssp ECT-TSSEEEEEET-TEEEEEESSSCSTTS-CCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE---EECC
T ss_pred ECC-CCCEEEEEeC-CcEEEEECCCCCcce-EEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE---EEec
Confidence 999 9999998886 899999998762 2 344567778899999999999999987 46899999876432 2222
Q ss_pred ccccc----------------ceeEEEEccCCCcEEEeecCCCCC---------------------------------eE
Q 040533 215 RDHRA----------------AVKALAWCPYQFNVLASGGGTQDG---------------------------------CI 245 (364)
Q Consensus 215 ~~~~~----------------~v~~~~~~~~~~~~~~~~~g~~d~---------------------------------~i 245 (364)
..+.. .+..++|+|+|+.++++.. |+ .|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~---d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI---DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE---ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEE---cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 22222 1478999999987777642 33 78
Q ss_pred EEEECCC-CeEEEEEe---cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccc----ceeEEe
Q 040533 246 KIWNVQK-GTCIHSVD---TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS----RILELS 317 (364)
Q Consensus 246 ~i~d~~~-~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~i~~i~ 317 (364)
.+||+.+ ++...... +...+..++| |+|+.|+.+.. .....+..|++||+.+++....+..+.. .+..++
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~-~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQ-SRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR 343 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEE-ETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEe-cccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence 9999988 77654432 3356899999 99999986532 1123467899999999988776665543 456899
Q ss_pred ecCCCCEEEEEeCCCcEEEEEee-CCCCCcceeccCCceeee-eeccC
Q 040533 318 QSPDGLTVVSAAADETLRFWEAF-GPSGSGDFVSHLDGLLSL-KVSPI 363 (364)
Q Consensus 318 ~~~~~~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~~~~v~~~-~~sp~ 363 (364)
|+|||+++++++.||.+++|.+. .+. ...+..|...|.++ .|||.
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~d 390 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEK 390 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETT
T ss_pred ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCC
Confidence 99999999999999998888876 334 66666777788887 59985
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=2e-26 Score=192.53 Aligned_cols=245 Identities=13% Similarity=0.136 Sum_probs=185.1
Q ss_pred EecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc-Ccceeeeeecc-cCcEEEEEEc
Q 040533 105 GYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV-SNNVTSRINAH-TAEVCGLKWS 182 (364)
Q Consensus 105 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~-~~~v~~~~~~ 182 (364)
++.++.|++||+.+++... +..|...+.+++|+| ++++|++++ ++.|.+||+.+ ++. ......+ ...+.+++|+
T Consensus 18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSP-EKVDTGFATICNNDHGIS 93 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSC-EECCCTTCCCBCSCCEEC
T ss_pred CCcceeEEEEeCCCCceee-eccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCc-eEeccccccccccceEEC
Confidence 4568899999999887664 445888999999999 999999886 78999999987 553 4444444 4678899999
Q ss_pred CCCCEEEEEe--CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEEC--CCCeEEEE
Q 040533 183 NEGNLLASGG--DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV--QKGTCIHS 258 (364)
Q Consensus 183 ~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~--~~~~~~~~ 258 (364)
|++++|++++ .++...+|.++... .....+..+ ..+..++|+|+++.+++++. .++.+++|++ .+++....
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~-~~~~~~~~spdg~~l~~~~~--~~~~~~l~~~~~~~~~~~~~ 168 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTG--GTPRLMTKN-LPSYWHGWSPDGKSFTYCGI--RDQVFDIYSMDIDSGVETRL 168 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTC--CCCEECCSS-SSEEEEEECTTSSEEEEEEE--ETTEEEEEEEETTTCCEEEC
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCC--CceEEeecC-CCccceEECCCCCEEEEEEC--CCCceEEEEEECCCCcceEc
Confidence 9999999998 33445555443211 113344333 34888999999987876665 6888888885 44554444
Q ss_pred EecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC-CCceeeeccccccceeEEeecCCCCEEEEEeCC------
Q 040533 259 VDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP-HMTKWGELQHQTSRILELSQSPDGLTVVSAAAD------ 331 (364)
Q Consensus 259 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------ 331 (364)
......+.++.|+|+++.++.+. ..++.+.+|++. .+..+..+..|...+..++|+|+|++|++++.+
T Consensus 169 ~~~~~~~~~~~~s~dg~~l~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 169 THGEGRNDGPDYSPDGRWIYFNS-----SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp CCSSSCEEEEEECTTSSEEEEEE-----CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred ccCCCccccceECCCCCEEEEEe-----cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence 44557799999999999887653 237788888876 566677788888889999999999999988776
Q ss_pred -----CcEEEEEeeCCCCCcc--eeccCCceeeeeeccC
Q 040533 332 -----ETLRFWEAFGPSGSGD--FVSHLDGLLSLKVSPI 363 (364)
Q Consensus 332 -----g~i~vw~~~~~~~~~~--~~~~~~~v~~~~~sp~ 363 (364)
+.|++||+.+++.... +.+|...+.+++|+|.
T Consensus 244 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 282 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPD 282 (297)
T ss_dssp CSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTT
T ss_pred cccCceEEEEEecCCCCceeeeccCCCCcccccceECCC
Confidence 5699999988766333 3377889999999985
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=4.5e-25 Score=189.33 Aligned_cols=260 Identities=10% Similarity=0.085 Sum_probs=202.6
Q ss_pred CCCceEEEEcCCCCEEEEEec-------CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCC-EEEEeeCCCcEEEEE
Q 040533 87 DDFPTSISWSQDAKTLAVGYM-------ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGH-ILTSGSQDKSIINHD 158 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d 158 (364)
...+..++|+|+++++++++. ++.|.+||..+++.+..+.. ...+..++|+| +++ ++++...++.|.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINN-TTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEET-TTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECC-CCCEEEEEecCCCEEEEEe
Confidence 446789999999999888874 56899999999998888774 34578899999 777 455556679999999
Q ss_pred cccCcceeeeeecccC---------cEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCCCCcceEEecccccceeEEEEc
Q 040533 159 VRVSNNVTSRINAHTA---------EVCGLKWSNEGNLLASGG--DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC 227 (364)
Q Consensus 159 ~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 227 (364)
+.+++. ...+..+.. .+.+++|+|+++++++++ .++.|.+||..+. +.+..+..+...+..++|+
T Consensus 118 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 118 AKTGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI---KLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp TTTCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT---EEEEEECCCCTTCCCCEEE
T ss_pred CCCCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC---ceEEEecCCCCccceEEEC
Confidence 987764 344433322 278899999999877776 4789999998764 3455555455668899999
Q ss_pred cCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-----CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 228 PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-----KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 228 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
|+++.++++. .++.|.+||+.+++....+.. ...+..++|+|++++++++. ..++.|.+||..+++.
T Consensus 194 ~dg~~l~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-----~~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 194 SEGKRLYTTN---ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITD-----SKAAEVLVVDTRNGNI 265 (353)
T ss_dssp TTTTEEEEEC---TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE-----SSSSEEEEEETTTCCE
T ss_pred CCCCEEEEEc---CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEe-----CCCCEEEEEECCCCcE
Confidence 9997766654 589999999999999888764 23477899999999887764 2369999999999998
Q ss_pred eeeccccccceeEEeecCCCCEEEEEe-CCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 303 WGELQHQTSRILELSQSPDGLTVVSAA-ADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 303 ~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+..+.... ...++|+|+|+++++++ .++.|.+||..+++.+..+.. ...+.+++|+|.
T Consensus 266 ~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~d 324 (353)
T 3vgz_A 266 LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALSAD 324 (353)
T ss_dssp EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEECTT
T ss_pred EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEcCC
Confidence 88776543 26799999999666555 689999999998877766654 446889999985
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=1.5e-25 Score=218.14 Aligned_cols=294 Identities=9% Similarity=0.050 Sum_probs=220.7
Q ss_pred eeecccCCCcc-EEE-EEeC------CeEEEEECCCCceeeeeeecCCCCCc-------eEEEEcCCCCEEEEEecC---
Q 040533 47 YSNMMDWGRNN-ILA-IALG------LELYLWKQENGEVQKLLKVTGEDDFP-------TSISWSQDAKTLAVGYMA--- 108 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~-~~~~------~~i~iw~~~~~~~~~~~~~~~~~~~v-------~~~~~s~~~~~l~~~~~d--- 108 (364)
.+..++|||++ .++ ++.+ ..|++|+..+++. ..+..|...+ .+++|+|||+++++++.+
T Consensus 54 ~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~---~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~ 130 (1045)
T 1k32_A 54 VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI---KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPF 130 (1045)
T ss_dssp EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE---EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSS
T ss_pred cccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe---EEcccCCCcccccccccccccCCCCCEEEEEECCcCCC
Confidence 47788999975 444 3332 3899999998874 3345777777 899999999977777644
Q ss_pred ---CcEEEEecCCccee-------------------------------------------------eeeecCCCcEEEEE
Q 040533 109 ---SKLQLWDAETSKLI-------------------------------------------------RNLEGHDKRVATAS 136 (364)
Q Consensus 109 ---g~i~iw~~~~~~~~-------------------------------------------------~~~~~~~~~v~~~~ 136 (364)
..|.+|++.+++.. ..+.+|...+.++.
T Consensus 131 ~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~ 210 (1045)
T 1k32_A 131 SSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPV 210 (1045)
T ss_dssp TTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEE
T ss_pred cccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceE
Confidence 35788887655422 12234667788888
Q ss_pred eecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc
Q 040533 137 WNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 137 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 216 (364)
|++ + .++++++.++.+.+|.+.........+..|. .+..++|+|+|+.|+++. ++.|++||+.. ..+..+..
T Consensus 211 ~s~-d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~----~~l~~l~~ 282 (1045)
T 1k32_A 211 IVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDT----EKIEKIEI 282 (1045)
T ss_dssp EET-T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTT----CCEEECCC
T ss_pred EeC-C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCc----eEeeeecc
Confidence 987 5 6777888889999998765333344454554 356779999999898875 89999999832 22334433
Q ss_pred -----------cccceeEEEEc-cCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC-CeEEEEEcCCccceeeeccC
Q 040533 217 -----------HRAAVKALAWC-PYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA-QICGLEWNRHHKEILSGHGF 283 (364)
Q Consensus 217 -----------~~~~v~~~~~~-~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~ 283 (364)
|...+.+++|+ |+++.+++.. ++.+.+|++.+++......+.. .+..++|+ +|+.++.+..
T Consensus 283 ~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~- 356 (1045)
T 1k32_A 283 GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS----RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR- 356 (1045)
T ss_dssp CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE----TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-
T ss_pred CcccccccccccccccceeeecCCCCCEEEEEE----cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-
Confidence 34478999999 9997666543 7899999998887655333445 78999999 9998887643
Q ss_pred CccCCCCeEE-EeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeecc
Q 040533 284 SSSGDGQKLC-LWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 284 ~~~~~~~~i~-i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
++.+. +|++.+++... +..|...+..++|+|||++|++++.++.|++||+.+++....+.+|.+.+.+++|||
T Consensus 357 -----~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp 430 (1045)
T 1k32_A 357 -----EGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD 430 (1045)
T ss_dssp -----TEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred -----CCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC
Confidence 77888 99998776544 447778899999999999999999999999999998887766668899999999999
Q ss_pred C
Q 040533 363 I 363 (364)
Q Consensus 363 ~ 363 (364)
.
T Consensus 431 D 431 (1045)
T 1k32_A 431 N 431 (1045)
T ss_dssp T
T ss_pred C
Confidence 5
No 145
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.95 E-value=4.1e-24 Score=184.04 Aligned_cols=286 Identities=12% Similarity=0.099 Sum_probs=195.4
Q ss_pred CCeEEEEEC--CCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC----CcEEEEecCC--cce--eeeeecCCCcEE
Q 040533 64 GLELYLWKQ--ENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA----SKLQLWDAET--SKL--IRNLEGHDKRVA 133 (364)
Q Consensus 64 ~~~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iw~~~~--~~~--~~~~~~~~~~v~ 133 (364)
++.|++|++ .+++...+... +...+..++|+|||++|++++.+ +.|.+|++.. ++. +.....+.....
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~ 103 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC 103 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE
T ss_pred CCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE
Confidence 467888865 56766555544 67778899999999999998875 7999998865 432 333444555677
Q ss_pred EEEeecCCCCEEEEee-CCCcEEEEEcccCcceeee--e---e--------cccCcEEEEEEcCCCCEEEEEe-CCCeEE
Q 040533 134 TASWNHWNGHILTSGS-QDKSIINHDVRVSNNVTSR--I---N--------AHTAEVCGLKWSNEGNLLASGG-DDNLVH 198 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~--~---~--------~~~~~v~~~~~~~~~~~l~~~~-~d~~i~ 198 (364)
.+++ ++++|++++ .++.|.+|++.....+... . . .+...+.+++|+|+|+++++++ .++.|.
T Consensus 104 ~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 180 (361)
T 3scy_A 104 YLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH 180 (361)
T ss_dssp EEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence 7777 566565555 6889999999754432111 0 0 1123458899999999766655 578999
Q ss_pred EEeCCCCCC------Ccc----eEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE--EEEec----C
Q 040533 199 VWDHSKMSS------SKC----LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI--HSVDT----K 262 (364)
Q Consensus 199 iwd~~~~~~------~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~----~ 262 (364)
+|++..... ... ..........+..++|+|+++.++++.. .++.|.+||+.+++.. ..+.. .
T Consensus 181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~~~~~g~~~~~~~~~~~~~~~ 258 (361)
T 3scy_A 181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE--IGGTVIAFRYADGMLDEIQTVAADTVNA 258 (361)
T ss_dssp EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTCEEEEEEEETTEEEEEEEEESCSSCC
T ss_pred EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC--CCCeEEEEEecCCceEEeEEEecCCCCC
Confidence 999875431 100 1112223455789999999987777764 6899999999877542 33322 1
Q ss_pred CCeEEEEEcCCccceeeeccCCccCC-CCeEEEeeCC--CCc--eeeeccccccceeEEeecCCCCEEEEEe-CCCcEEE
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGD-GQKLCLWKYP--HMT--KWGELQHQTSRILELSQSPDGLTVVSAA-ADETLRF 336 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~-~~~i~i~d~~--~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~v 336 (364)
.....++|+|+|++++++.. . ++.|.+|++. +++ .+..+.. ...+..++|+|+|++|++++ .++.|.+
T Consensus 259 ~~~~~i~~spdg~~l~v~~~-----~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v 332 (361)
T 3scy_A 259 QGSGDIHLSPDGKYLYASNR-----LKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQI 332 (361)
T ss_dssp CCEEEEEECTTSSEEEEEEC-----SSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEE
T ss_pred CCcccEEECCCCCEEEEECC-----CCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEE
Confidence 34679999999999877642 2 4789999985 344 3444444 45678999999999988887 6789999
Q ss_pred EEee--CCCCCcce-eccCCceeeeeecc
Q 040533 337 WEAF--GPSGSGDF-VSHLDGLLSLKVSP 362 (364)
Q Consensus 337 w~~~--~~~~~~~~-~~~~~~v~~~~~sp 362 (364)
|++. +++..... ..+...+.|++|.+
T Consensus 333 ~~~d~~~g~~~~~~~~~~~~~p~~v~~~~ 361 (361)
T 3scy_A 333 FERDQATGLLTDIKKDIKVDKPVCLKFVD 361 (361)
T ss_dssp EEECTTTCCEEECSCCEECSSEEEEEEEC
T ss_pred EEEECCCCcEeecceeeeCCCCeEEEEcC
Confidence 8776 34332222 13456789999863
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=1.1e-24 Score=185.39 Aligned_cols=237 Identities=6% Similarity=0.082 Sum_probs=178.6
Q ss_pred EEcCCCCE-EEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeC-CCcEEEEEcccCcceeeeeec
Q 040533 94 SWSQDAKT-LAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ-DKSIINHDVRVSNNVTSRINA 171 (364)
Q Consensus 94 ~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~ 171 (364)
.|.+++++ ++++..++.|.+||+.+++....+..+...+ .++|+| +++++++++. ++.|.+||+.++......+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECS-SSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 45666555 6677788999999999999988887766677 999999 8876665554 889999999877643455555
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCe-EEE
Q 040533 172 HTAEVCGLKWSNEGNLLASGGDDN---LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGC-IKI 247 (364)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~-i~i 247 (364)
+..+..+++|+|++++++++..++ .|.+||+.... .+..+.. .....+++|+|+++.++++.. .++. |.+
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~---~~~~~~~-~~~~~~~~~spdg~~l~~~~~--~~~~~i~~ 155 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK---FISTIPI-PYDAVGIAISPNGNGLILIDR--SSANTVRR 155 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE---EEEEEEC-CTTEEEEEECTTSSCEEEEEE--TTTTEEEE
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC---eEEEEEC-CCCccceEECCCCCEEEEEec--CCCceEEE
Confidence 666655599999999999665553 89999987643 3444443 345689999999988888765 5677 999
Q ss_pred EECCCCeEE-----EEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce---eeeccccccceeEEeec
Q 040533 248 WNVQKGTCI-----HSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK---WGELQHQTSRILELSQS 319 (364)
Q Consensus 248 ~d~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~ 319 (364)
|++.....+ ..+........++|+|+|++++++. ..++.|.+||+.+++. +..+..+ ..+..++|+
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~-----~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~s 229 (331)
T 3u4y_A 156 FKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVAN-----LIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVS 229 (331)
T ss_dssp EEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEE-----TTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEEC
T ss_pred EEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEe-----CCCCeEEEEECCCCcccceeeeccCC-CCCceEEEC
Confidence 998764332 2334456689999999999776553 2388999999999888 7666644 567899999
Q ss_pred CCCCEEEEEe-CCCcEEEEEeeCCCC
Q 040533 320 PDGLTVVSAA-ADETLRFWEAFGPSG 344 (364)
Q Consensus 320 ~~~~~l~~~~-~dg~i~vw~~~~~~~ 344 (364)
|+|++|++++ .++.|.+||+.+++.
T Consensus 230 pdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 230 RDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp TTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred CCCCEEEEEEcCCCEEEEEECCCCce
Confidence 9999776654 578899999988765
No 147
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=1.6e-25 Score=217.84 Aligned_cols=258 Identities=9% Similarity=0.041 Sum_probs=201.4
Q ss_pred cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCC-cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAET-SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 84 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
.+|...+.++.|+++ .++++++.+|.+.||.+.. +.....+..|. .+...+|+| +++.|+.+ .++.|.+||+...
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~Sp-DG~~la~~-~~~~i~~~d~~~~ 275 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNT-DGRRILFS-KGGSIYIFNPDTE 275 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEE-SSSCEEEE-ETTEEEEECTTTC
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcC-CCCEEEEE-eCCEEEEecCCce
Confidence 467778889999988 6667777889999998753 44455555554 466779999 89888887 4889999998433
Q ss_pred cceeeeeec-----------ccCcEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc-ceeEEEEccC
Q 040533 163 NNVTSRINA-----------HTAEVCGLKWS-NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA-AVKALAWCPY 229 (364)
Q Consensus 163 ~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 229 (364)
. +..+.. |...+.+++|+ |+|+.|++++ ++.+.+|++.... ...+..+.. .+..++|+ +
T Consensus 276 -~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~s-d 347 (1045)
T 1k32_A 276 -K-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY----VLKVPEPLRIRYVRRGGD-T 347 (1045)
T ss_dssp -C-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB----EEECSCCSCEEEEEECSS-S
T ss_pred -E-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc----eEEccCCCcceEEeeeEc-C
Confidence 2 223333 34468899999 9999999888 7899999976542 344556666 89999999 8
Q ss_pred CCcEEEeecCCCCCeEE-EEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc
Q 040533 230 QFNVLASGGGTQDGCIK-IWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 230 ~~~~~~~~~g~~d~~i~-i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
++.++..+ .++.+. +||+.+++......+...+..++|+|+|+.++.+.. ++.|++||+.+++.......
T Consensus 348 g~~l~~~s---~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~------~~~v~~~d~~tg~~~~~~~~ 418 (1045)
T 1k32_A 348 KVAFIHGT---REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND------RFEIMTVDLETGKPTVIERS 418 (1045)
T ss_dssp EEEEEEEE---TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEEC
T ss_pred CCeEEEEE---CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECC------CCeEEEEECCCCceEEeccC
Confidence 86555543 477888 999988765544434467999999999999998754 88999999999988887778
Q ss_pred cccceeEEeecCCCCEEEEEeCCC----------cEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 309 QTSRILELSQSPDGLTVVSAAADE----------TLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg----------~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
|...+.+++|+|||++|++++.++ .|++||+.+++ ...+..|...+.+++|+|.
T Consensus 419 ~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spd 482 (1045)
T 1k32_A 419 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDAD 482 (1045)
T ss_dssp SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTT
T ss_pred CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCC
Confidence 888999999999999999887654 89999998876 5666778888999999985
No 148
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=6.2e-24 Score=181.38 Aligned_cols=264 Identities=11% Similarity=0.117 Sum_probs=182.7
Q ss_pred eecccCCCcc--EEEEEeC-CeEEEEECC--CCceeeeeeecCCCCCceEEEEcCCCCEEEEEec-CCcEEEEecC---C
Q 040533 48 SNMMDWGRNN--ILAIALG-LELYLWKQE--NGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM-ASKLQLWDAE---T 118 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~-~~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~---~ 118 (364)
...++|+|++ +++++.+ +.|.+|++. +++...+..+..+. .+.+++|+|++++|++++. ++.|.+||+. .
T Consensus 40 ~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 118 (343)
T 1ri6_A 40 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP 118 (343)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE
T ss_pred CceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc
Confidence 5668888864 5555554 899999997 66655555554434 7899999999998877664 7889999994 4
Q ss_pred cceeeeeecCCCcEEEEEeecCCCCEEEEee-CCCcEEEEEcccCcceee----eeec-ccCcEEEEEEcCCCCEEEEEe
Q 040533 119 SKLIRNLEGHDKRVATASWNHWNGHILTSGS-QDKSIINHDVRVSNNVTS----RINA-HTAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~~ 192 (364)
.+....+.. ...+.+++|+| +++++++++ .++.|.+||+.+...... .... ....+..++|+|+++++++++
T Consensus 119 ~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~ 196 (343)
T 1ri6_A 119 VGVVDVVEG-LDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN 196 (343)
T ss_dssp EEEEEEECC-CTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred ccccccccC-CCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEe
Confidence 444555543 34688999999 888777776 899999999986332221 1222 345788999999999776554
Q ss_pred -CCCeEEEEeCCCCC-CCcceEEec---cc---ccceeEEEEccCCCcEEEeecCCCCCeEEEEECC--C--CeEEEEEe
Q 040533 193 -DDNLVHVWDHSKMS-SSKCLHRFR---DH---RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ--K--GTCIHSVD 260 (364)
Q Consensus 193 -~d~~i~iwd~~~~~-~~~~~~~~~---~~---~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~--~~~~~~~~ 260 (364)
.++.|.+||+.... ......... .. ...+..++|+|+++.++++.. .++.|.+||+. + .+.+..+.
T Consensus 197 ~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~--~~~~i~v~d~~~~~~~~~~~~~~~ 274 (343)
T 1ri6_A 197 ELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR--TASLITVFSVSEDGSVLSKEGFQP 274 (343)
T ss_dssp TTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCCEEEEEEEE
T ss_pred CCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec--CCCEEEEEEEcCCCCceEEeeeec
Confidence 78999999986421 111122221 11 234668999999988887765 68999999998 2 34555566
Q ss_pred cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC--CCCc--eeeeccccccceeEEeecCCC
Q 040533 261 TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY--PHMT--KWGELQHQTSRILELSQSPDG 322 (364)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~--~~~~--~~~~~~~~~~~i~~i~~~~~~ 322 (364)
....+..++|+|+|++++++. ..++.|.+|++ .+++ .+..+... ....+++|.|+.
T Consensus 275 ~~~~~~~~~~s~dg~~l~~~~-----~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~ 334 (343)
T 1ri6_A 275 TETQPRGFNVDHSGKYLIAAG-----QKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHE 334 (343)
T ss_dssp CSSSCCCEEECTTSSEEEEEC-----TTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC
T ss_pred CCCccceEEECCCCCEEEEec-----CCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEccc
Confidence 666689999999999888764 24799999954 4543 23333332 345666776644
No 149
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.94 E-value=9.6e-24 Score=185.40 Aligned_cols=212 Identities=18% Similarity=0.170 Sum_probs=152.8
Q ss_pred EEeeCCCCCCCcceeecccCCCc-cEEEEEeCCeEEEEECCCCc-----------ee---eeeeecCCCCCceEEEEcCC
Q 040533 34 ARILDAPNLRNDYYSNMMDWGRN-NILAIALGLELYLWKQENGE-----------VQ---KLLKVTGEDDFPTSISWSQD 98 (364)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~-----------~~---~~~~~~~~~~~v~~~~~s~~ 98 (364)
.++++.+........+.++++++ ++++++....+++|+..... .. ....+ .+...|.+++|+|+
T Consensus 25 vri~~~~~~~~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spd 103 (434)
T 2oit_A 25 VRIFDSPEELPKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCD 103 (434)
T ss_dssp EECSCCCSSCCCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTT
T ss_pred EEecCCccccCCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCC
Confidence 34444333222335788888874 46665555559998753210 00 00111 45678999999999
Q ss_pred CCEEE----EEecCCcEEEEecCCc--------ce---eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 99 AKTLA----VGYMASKLQLWDAETS--------KL---IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 99 ~~~l~----~~~~dg~i~iw~~~~~--------~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
+++|+ +|+.|+.|+|||+.++ +. ...+.+|...|.+++|+|.++++|++++.||+|++||++++.
T Consensus 104 g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~ 183 (434)
T 2oit_A 104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV 183 (434)
T ss_dssp SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence 99999 7788999999998765 21 345567899999999999448999999999999999999775
Q ss_pred ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc-------cccceeEEEEccCCCcEEEe
Q 040533 164 NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD-------HRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~ 236 (364)
. .....+|...|.+++|+|+|++|++|+.||.|++||++ .. ....+.. |...|.+++|++++..+++.
T Consensus 184 ~-~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~---~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~ 258 (434)
T 2oit_A 184 K-VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ---EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVY 258 (434)
T ss_dssp E-EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC---EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred c-eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc---ccccccCCcccCCCCceeEEEEEEecCceEEEEE
Confidence 4 44455788999999999999999999999999999987 22 1233322 23479999999987555444
Q ss_pred ecCCCCC------eEEEEECCCC
Q 040533 237 GGGTQDG------CIKIWNVQKG 253 (364)
Q Consensus 237 ~~g~~d~------~i~i~d~~~~ 253 (364)
.. .+| .+++|++++.
T Consensus 259 ~~--~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 259 AA--ADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EE--TTCCSSSCCEEEEEECCCT
T ss_pred cc--CCCccCCCCceEEEEeccC
Confidence 43 332 4899999864
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.94 E-value=6.3e-25 Score=188.05 Aligned_cols=242 Identities=10% Similarity=0.040 Sum_probs=185.2
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCC-CcEEEEEeecCCCCEE-EEeeCCCcEEEEEcccCcceeeee
Q 040533 92 SISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD-KRVATASWNHWNGHIL-TSGSQDKSIINHDVRVSNNVTSRI 169 (364)
Q Consensus 92 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~ 169 (364)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+| +++.+ +++..++.|.+||+.+++. ...+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKN-TFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEE-EEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcE-EEEE
Confidence 45678888999999999999999999999888877443 2578899999 77755 5556789999999987664 3333
Q ss_pred ec-c-----cCcEEEEEEcCCCCEEEEEeCC------------CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCC
Q 040533 170 NA-H-----TAEVCGLKWSNEGNLLASGGDD------------NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQF 231 (364)
Q Consensus 170 ~~-~-----~~~v~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 231 (364)
.. + ...+..++|+|+|+++++++.+ +.|.+||+.+....+.+..+. +...+.+++|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS 160 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC
T ss_pred EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc
Confidence 22 2 2236789999999999998865 899999987644333344443 334688999999997
Q ss_pred cEEEeecCCCCCeEEEEECCCCeEEEEEecCC------------------------------------------------
Q 040533 232 NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA------------------------------------------------ 263 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~------------------------------------------------ 263 (364)
+++.+ +.|.+||+.+++.+..+....
T Consensus 161 -l~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 161 -LYVAG-----PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp -EEEES-----SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred -EEEcc-----CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 66632 339999999988777664331
Q ss_pred ---------------------CeEEEEEcC-CccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCC
Q 040533 264 ---------------------QICGLEWNR-HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 264 ---------------------~v~~~~~~~-~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
.+..++++| ++++++++ ++.|.+||+.+++.+..+... ..+.+++|+|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~d 305 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--------LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKK 305 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--------ESEEEEEETTTTEEEEEEECS-SCCCEEEECSS
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--------cCeEEEEECccCeEEEEEcCC-CCccceEECCC
Confidence 234567778 88888876 789999999999887777543 35789999999
Q ss_pred CCEEEEEeCCCcEEEEEeeCCCCCcceecc
Q 040533 322 GLTVVSAAADETLRFWEAFGPSGSGDFVSH 351 (364)
Q Consensus 322 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 351 (364)
|++|++++.++.|++||+.+++.+..+..+
T Consensus 306 g~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 306 GDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 999998888999999999988877766544
No 151
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=2.3e-25 Score=209.33 Aligned_cols=268 Identities=12% Similarity=0.061 Sum_probs=189.7
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCC---cEEEEEeecCCCCEEEEeeCC---------CcEE
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDK---RVATASWNHWNGHILTSGSQD---------KSII 155 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~d---------g~i~ 155 (364)
..+.+++|+|||+++++ +.||.|++||+.+++....+..|.. .|.+++|+| ++++|++++.+ +.+.
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECC-CCCEEEEEecCccceeecceeeEE
Confidence 34678999999998776 6899999999999988877776654 499999999 99999998764 7788
Q ss_pred EEEcccCcce-eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccc--------------
Q 040533 156 NHDVRVSNNV-TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAA-------------- 220 (364)
Q Consensus 156 ~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------------- 220 (364)
+||+.+++.. +.....|...+..++|||||+.|+.++. +.|++||+..+.. ......+...
T Consensus 95 ~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~---~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 95 LSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA---IRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp EEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC---EEEECCCBTTTEEEEECCHHHHHT
T ss_pred EEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce---EEEecCCCCCceECcccceeEEEE
Confidence 9999877631 1122234445888999999999999886 7999999876533 3333332222
Q ss_pred ----eeEEEEccCCCcEEEeecC-------------------------------CCCCeEEEEECCCCeEEEEEec----
Q 040533 221 ----VKALAWCPYQFNVLASGGG-------------------------------TQDGCIKIWNVQKGTCIHSVDT---- 261 (364)
Q Consensus 221 ----v~~~~~~~~~~~~~~~~~g-------------------------------~~d~~i~i~d~~~~~~~~~~~~---- 261 (364)
+.+++|+|+|+.++.+... ..+..|++||+.+++....+..
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP 250 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence 3789999999776665420 0022899999998876555543
Q ss_pred ---CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc-cccce----eEEeecCCCCEEEE--EeCC
Q 040533 262 ---KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH-QTSRI----LELSQSPDGLTVVS--AAAD 331 (364)
Q Consensus 262 ---~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i----~~i~~~~~~~~l~~--~~~d 331 (364)
...+..++|+|+|+.++.... ....+..|++||+.+++....+.. +...+ ..++|+|||+.|+. +..+
T Consensus 251 ~~~~~~~~~~~~SpDg~~l~~~~~--~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 328 (723)
T 1xfd_A 251 RMREYYITMVKWATSTKVAVTWLN--RAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ 328 (723)
T ss_dssp GGSSEEEEEEEESSSSEEEEEEEE--TTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred CCccceeEEEEEeCCCeEEEEEEc--CCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence 345889999999998866532 113357899999999887666543 33333 37899999997775 4466
Q ss_pred C------cEEEEE-eeCCCC--CcceeccCCceee-eeeccC
Q 040533 332 E------TLRFWE-AFGPSG--SGDFVSHLDGLLS-LKVSPI 363 (364)
Q Consensus 332 g------~i~vw~-~~~~~~--~~~~~~~~~~v~~-~~~sp~ 363 (364)
+ .|++|| ...+.. ...+..+...+.. ++|||.
T Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spd 370 (723)
T 1xfd_A 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK 370 (723)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT
T ss_pred CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCC
Confidence 7 466666 333331 4455433444544 689985
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.93 E-value=3.4e-25 Score=207.94 Aligned_cols=303 Identities=10% Similarity=0.081 Sum_probs=207.3
Q ss_pred ecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeecCCCC---CceEEEEcCCCCEEEEEec---------CCcEEEEe
Q 040533 49 NMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVTGEDD---FPTSISWSQDAKTLAVGYM---------ASKLQLWD 115 (364)
Q Consensus 49 ~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~---------dg~i~iw~ 115 (364)
..+.|+|++ +++.+.++.|++||..+++...+.. +|.. .+.+++|||||++|++++. ++.|++||
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILS--NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEEC--HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEc--cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 357788865 5556678999999999998765543 2222 4899999999999999876 68999999
Q ss_pred cCCccee--eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcE-----------------
Q 040533 116 AETSKLI--RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEV----------------- 176 (364)
Q Consensus 116 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v----------------- 176 (364)
+.+++.+ ..+ ...+..++|+| +++.|+.+. ++.|++||+.++........++...+
T Consensus 97 ~~~g~~~~~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 97 LSNGEFVRGNEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp TTTTEECCSSCC---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred CCCCccccceec---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 9988763 222 25688899999 999998885 78999999987664322223333322
Q ss_pred EEEEEcCCCCEEEEEeCCC----------------------------------eEEEEeCCCCCCC--cce---EEeccc
Q 040533 177 CGLKWSNEGNLLASGGDDN----------------------------------LVHVWDHSKMSSS--KCL---HRFRDH 217 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~d~----------------------------------~i~iwd~~~~~~~--~~~---~~~~~~ 217 (364)
.+++|+|||+.|++++.|. .|++||+...... ..+ ..+.+|
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 4899999999999987552 7889998764310 001 123357
Q ss_pred ccceeEEEEccCCCcEEEeec--CCCCCeEEEEE----CCCCeEEEEE-----ecCCCeE-----EEEEcCCccceeeec
Q 040533 218 RAAVKALAWCPYQFNVLASGG--GTQDGCIKIWN----VQKGTCIHSV-----DTKAQIC-----GLEWNRHHKEILSGH 281 (364)
Q Consensus 218 ~~~v~~~~~~~~~~~~~~~~~--g~~d~~i~i~d----~~~~~~~~~~-----~~~~~v~-----~~~~~~~~~~l~~~~ 281 (364)
...+..++|+|++ .++++.. +.....|.+|| ..+++....+ .+...+. .+.|+|+|+.++...
T Consensus 252 ~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 252 DYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp CEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred cceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEE
Confidence 7789999999996 5665532 11224589999 8777654433 2234455 789999999776521
Q ss_pred cCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCC-----CcEEEEEeeC--CC-CCccee----
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAAD-----ETLRFWEAFG--PS-GSGDFV---- 349 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~vw~~~~--~~-~~~~~~---- 349 (364)
.. ......|++||+.+++ ...+..+...+..+.++ +++.|+..+.+ +..++|.+.. +. ....+.
T Consensus 331 ~~--~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~ 406 (719)
T 1z68_A 331 SD--KDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLR 406 (719)
T ss_dssp EC--TTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTT
T ss_pred Ec--cCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccC
Confidence 10 0124468888887766 44555566667787777 88777766654 8899999875 21 112222
Q ss_pred ccCCceeeeeeccC
Q 040533 350 SHLDGLLSLKVSPI 363 (364)
Q Consensus 350 ~~~~~v~~~~~sp~ 363 (364)
+|...+..+.|||.
T Consensus 407 ~~~~~~~~~~~s~d 420 (719)
T 1z68_A 407 KERCQYYTASFSDY 420 (719)
T ss_dssp TTTBCBEEEEECGG
T ss_pred CCCCceEEEEECCC
Confidence 25567778888873
No 153
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.93 E-value=7.5e-23 Score=176.31 Aligned_cols=273 Identities=10% Similarity=0.009 Sum_probs=185.4
Q ss_pred CeEEEEEC--CCCceeeeeeec-CCCCCceEEEEcCCCCEEEEEecCCcEEEEecC-Ccceeeeeec-CCCcEEEEEeec
Q 040533 65 LELYLWKQ--ENGEVQKLLKVT-GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE-TSKLIRNLEG-HDKRVATASWNH 139 (364)
Q Consensus 65 ~~i~iw~~--~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~-~~~~v~~~~~~~ 139 (364)
+.|++|++ .+++...+.... .....+..++|+|+|++|++++.+ .|.+|++. +++....... ..+....++|+|
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp 92 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT 92 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC
Confidence 56777664 566654443321 234578899999999999998877 99999997 7765543321 112355689999
Q ss_pred CCCCE--EEEee-------------CCCcEEEEEcccCcceeeeee----cccCcEEEEEEcCCCCEEEEEeC-CCeEEE
Q 040533 140 WNGHI--LTSGS-------------QDKSIINHDVRVSNNVTSRIN----AHTAEVCGLKWSNEGNLLASGGD-DNLVHV 199 (364)
Q Consensus 140 ~~~~~--l~~~~-------------~dg~i~~~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i 199 (364)
++++ +++++ .+|.+.+|++.....+...+. .+...+.+++|+|+|++++++.. ++.|++
T Consensus 93 -dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~ 171 (365)
T 1jof_A 93 -NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWT 171 (365)
T ss_dssp -CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred -CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEE
Confidence 8884 55553 689999999974333332222 24567899999999998887764 679999
Q ss_pred EeCC-CCCCCcceEEec--ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECC--CCeEE---EEEec---C----C-
Q 040533 200 WDHS-KMSSSKCLHRFR--DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ--KGTCI---HSVDT---K----A- 263 (364)
Q Consensus 200 wd~~-~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~~~~~---~~~~~---~----~- 263 (364)
||+. +++. ..+..+. .+...+..++|+|+++.++++.. .++.|.+|++. +++.. ..+.. . .
T Consensus 172 ~~~~~~g~~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 248 (365)
T 1jof_A 172 HRKLASGEV-ELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDP 248 (365)
T ss_dssp EEECTTSCE-EEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCT
T ss_pred EEECCCCCE-EEeeeEecCCCCCCCCEeEECCCCCEEEEEEC--CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccc
Confidence 9987 3321 1222332 23456899999999987776654 57899999765 56543 22321 1 1
Q ss_pred ------CeEEEE-EcCCccceeeeccCCccCCCCeEEEeeCC-CCceee---eccccccceeEEeecC---CCCEEEEEe
Q 040533 264 ------QICGLE-WNRHHKEILSGHGFSSSGDGQKLCLWKYP-HMTKWG---ELQHQTSRILELSQSP---DGLTVVSAA 329 (364)
Q Consensus 264 ------~v~~~~-~~~~~~~l~~~~~~~~~~~~~~i~i~d~~-~~~~~~---~~~~~~~~i~~i~~~~---~~~~l~~~~ 329 (364)
.+..++ |+|+|++|+++.........+.|.+|++. +++... ....+...+..++|+| ||++|++++
T Consensus 249 ~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~ 328 (365)
T 1jof_A 249 ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred ccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence 478899 99999998876431000001289999986 555433 1333445577899999 899999998
Q ss_pred CC-CcEEEEEeeCC
Q 040533 330 AD-ETLRFWEAFGP 342 (364)
Q Consensus 330 ~d-g~i~vw~~~~~ 342 (364)
.+ +.|.+|++...
T Consensus 329 ~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 329 DQEGWLEIYRWKDE 342 (365)
T ss_dssp SSSCEEEEEEEETT
T ss_pred cCCCeEEEEEEchh
Confidence 65 89999999875
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.93 E-value=2.2e-24 Score=197.52 Aligned_cols=249 Identities=10% Similarity=0.012 Sum_probs=180.4
Q ss_pred CCCceEEEEcCCCCEEEEEec-CCcEEEEecCCcceeeeeecCC-CcEEEEEeecCCCCEEEEeeC---CCcEEEEEccc
Q 040533 87 DDFPTSISWSQDAKTLAVGYM-ASKLQLWDAETSKLIRNLEGHD-KRVATASWNHWNGHILTSGSQ---DKSIINHDVRV 161 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~ 161 (364)
..+|.+++|+|||++||+++. ||+++||++++++..+ +..+. ..+..++|+| + +++++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCC-C-eEEEEeccCCCCcceEEEEEec
Confidence 457999999999999999886 9999999997665544 44455 6899999999 6 77777765 45566766654
Q ss_pred --CcceeeeeecccCcEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec
Q 040533 162 --SNNVTSRINAHTAEVCGLKWSNEGNL-LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 162 --~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
..... .+... ..+...+|+|+++. +++.+.++.+.+||+.++. ...+..+.. .+++|+|+|+.++.++
T Consensus 98 ~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~----~~~l~~~~~--~~~~~spDG~~la~~~- 168 (582)
T 3o4h_A 98 SRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG----LRELARLPG--FGFVSDIRGDLIAGLG- 168 (582)
T ss_dssp TSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE----EEEEEEESS--CEEEEEEETTEEEEEE-
T ss_pred cCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc----EEEeecCCC--ceEEECCCCCEEEEEE-
Confidence 33222 22222 23446678887752 3334444556699986543 223333333 8899999997666544
Q ss_pred CCCC----CeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCC--eEEEeeCCCCceeeeccccccc
Q 040533 239 GTQD----GCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ--KLCLWKYPHMTKWGELQHQTSR 312 (364)
Q Consensus 239 g~~d----~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~ 312 (364)
.+ +.|++||+.+++......+...+..++|+|+|+.|+++.. ++ .|++||+.+++.. .+..|...
T Consensus 169 --~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~------~~~~~i~~~d~~~~~~~-~~~~~~~~ 239 (582)
T 3o4h_A 169 --FFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLET------AREARLVTVDPRDGSVE-DLELPSKD 239 (582)
T ss_dssp --EEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEEC------SSCEEEEEECTTTCCEE-ECCCSCSH
T ss_pred --EcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccC------CCeeEEEEEcCCCCcEE-EccCCCcC
Confidence 34 7899999998887654445577899999999999995532 66 8999999998887 77778777
Q ss_pred eeEEe--------ecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeec
Q 040533 313 ILELS--------QSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVS 361 (364)
Q Consensus 313 i~~i~--------~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s 361 (364)
+..++ |+|||.++++++.||.+++|++ ++... .+.+.+.+++|+
T Consensus 240 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s 291 (582)
T 3o4h_A 240 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW 291 (582)
T ss_dssp HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE
T ss_pred hhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec
Confidence 77788 9999998999999999999999 44332 334667788877
No 155
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.93 E-value=9.1e-23 Score=177.34 Aligned_cols=286 Identities=13% Similarity=0.074 Sum_probs=194.8
Q ss_pred eeecccCCCcc--EEEEEe-CC--eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 47 YSNMMDWGRNN--ILAIAL-GL--ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 47 ~~~~~~~~~~~--~~~~~~-~~--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+....+|+|++ ++.++. ++ .|++||+.+++..++.. ++...+..+.|+|||+.|+.++.++.|++||+.+++.
T Consensus 37 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~--~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 37 YFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE--GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC--SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred hhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee--CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 44557899864 444444 45 59999999988765543 5555566788999999999999889999999999987
Q ss_pred eeeeecCCCcEEEEEe--ecCCCCEEEEe----------------------eCCCcEEEEEcccCcceeeeeecccCcEE
Q 040533 122 IRNLEGHDKRVATASW--NHWNGHILTSG----------------------SQDKSIINHDVRVSNNVTSRINAHTAEVC 177 (364)
Q Consensus 122 ~~~~~~~~~~v~~~~~--~~~~~~~l~~~----------------------~~dg~i~~~d~~~~~~~~~~~~~~~~~v~ 177 (364)
...+..+...+....| +| ++.+++.. ..+..|.+||+.+++ ...+..+...+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~ 191 (388)
T 3pe7_A 115 NVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLG 191 (388)
T ss_dssp EEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEE
T ss_pred eeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--eEEeecCCcccc
Confidence 7776666665544444 77 88887742 234679999998775 344445677789
Q ss_pred EEEEcC-CCCEEEEEeCC------CeEEEEeCCCCCCCcceEEecccc--cceeEEEEccCCCcEEEeec--CCCCCeEE
Q 040533 178 GLKWSN-EGNLLASGGDD------NLVHVWDHSKMSSSKCLHRFRDHR--AAVKALAWCPYQFNVLASGG--GTQDGCIK 246 (364)
Q Consensus 178 ~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~--g~~d~~i~ 246 (364)
.++|+| +|+.|+....+ ..|.++|..... ...+..+. ..+...+|+|+|+.++.... +..+..|+
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (388)
T 3pe7_A 192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIY 267 (388)
T ss_dssp EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEE
T ss_pred ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEE
Confidence 999999 99988887753 378888865432 33333333 35778899999987766543 11123499
Q ss_pred EEECCCCeEEEEEecCCC------eEEEEEcCCccceeeeccCC---ccCCCCeEEEeeCCCCceeeecccccc------
Q 040533 247 IWNVQKGTCIHSVDTKAQ------ICGLEWNRHHKEILSGHGFS---SSGDGQKLCLWKYPHMTKWGELQHQTS------ 311 (364)
Q Consensus 247 i~d~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~~~~~~~---~~~~~~~i~i~d~~~~~~~~~~~~~~~------ 311 (364)
+||+.+++.......... ...+.|+|+|+.++....-. ....+..|++||+.+++. ..+..+..
T Consensus 268 ~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~ 346 (388)
T 3pe7_A 268 SADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFE 346 (388)
T ss_dssp EECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBT
T ss_pred EEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccc
Confidence 999999875433222221 22347999999888542100 013367899999988665 44444544
Q ss_pred -----ceeEEeecCCCCEEEEEe-CCCcEEEEEeeCC
Q 040533 312 -----RILELSQSPDGLTVVSAA-ADETLRFWEAFGP 342 (364)
Q Consensus 312 -----~i~~i~~~~~~~~l~~~~-~dg~i~vw~~~~~ 342 (364)
.+..++|+|||+.|+.++ .+|...+|.+.-.
T Consensus 347 ~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 347 GDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp TBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred cccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 578899999999887665 5788888877643
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=2.1e-22 Score=172.40 Aligned_cols=248 Identities=8% Similarity=0.077 Sum_probs=173.3
Q ss_pred eecccCCCcc-EEEEEe---CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCC-c--
Q 040533 48 SNMMDWGRNN-ILAIAL---GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAET-S-- 119 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~-~-- 119 (364)
...++|+|++ +++++. ++.|++|++.+++...+..+..+...+..++|+|+|++|++++ .++.|.+|++.. +
T Consensus 42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 42 PTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp CCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred cceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 4557888865 555554 4799999998877655555556677899999999999888887 678999999963 2
Q ss_pred ceeeeeec---------CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee--eeec-ccCcEEEEEEcCCCCE
Q 040533 120 KLIRNLEG---------HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS--RINA-HTAEVCGLKWSNEGNL 187 (364)
Q Consensus 120 ~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~ 187 (364)
+.+..+.. +...+.+++|+| +++++++...++.|.+|++.....+.. .... ....+..++|+|+|++
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~ 200 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY 200 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred eecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE
Confidence 22333321 123488999999 888777777788999999983332221 1122 2336788999999996
Q ss_pred EEE-EeCCCeEEEEeCCCCC-CCcceEEecccc------cceeEEEEccCCCcEEEeecCCCCCeEEEEECCC---CeEE
Q 040533 188 LAS-GGDDNLVHVWDHSKMS-SSKCLHRFRDHR------AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK---GTCI 256 (364)
Q Consensus 188 l~~-~~~d~~i~iwd~~~~~-~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~~~~ 256 (364)
+++ ...++.|.+|++.... ....+..+.... ..+..++|+|+++.++++.. .++.|.+|++.. .+.+
T Consensus 201 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~--~~~~v~v~~~~~~g~~~~~ 278 (347)
T 3hfq_A 201 AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR--GYNTLAVFAVTADGHLTLI 278 (347)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE--TTTEEEEEEECGGGCEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC--CCCEEEEEEECCCCcEEEe
Confidence 665 4568899999976421 111222222222 34788999999987877765 689999999973 2445
Q ss_pred EEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEe--eCCCCcee
Q 040533 257 HSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLW--KYPHMTKW 303 (364)
Q Consensus 257 ~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~--d~~~~~~~ 303 (364)
..+.. ...+..++|+|+|++|+++.. .++.|.+| |..+++..
T Consensus 279 ~~~~~~~~~~~~~~~spdg~~l~v~~~-----~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 279 QQISTEGDFPRDFDLDPTEAFVVVVNQ-----NTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEECSSSCCCEEEECTTSSEEEEEET-----TTTEEEEEEECTTTCCEE
T ss_pred EEEecCCCCcCeEEECCCCCEEEEEEc-----CCCcEEEEEEeCCCCeEE
Confidence 55554 345889999999998887642 36899999 54555544
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=6.1e-23 Score=174.74 Aligned_cols=245 Identities=13% Similarity=0.118 Sum_probs=184.2
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeeecCCC--cEEEEEeecCCCCEE-EEeeCCCcEEEEEcccCcceeeeee-cc---
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLEGHDK--RVATASWNHWNGHIL-TSGSQDKSIINHDVRVSNNVTSRIN-AH--- 172 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~-~~--- 172 (364)
+++++++.++.|.+||+.+++.+..+..... .+..++|+| +++.+ +++..++.|.+||+.+++. ...+. .+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC-CCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCccc
Confidence 4788999999999999999998887763322 578899999 77654 5666788999999987764 33232 22
Q ss_pred -cCcEEEEEEcCCCCEEEEEe------------CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 173 -TAEVCGLKWSNEGNLLASGG------------DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 173 -~~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
...+..++|+|++++++++. .++.|.+||+.+. +.+..+.. ...+.+++|+|+++.++++
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~--- 152 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL---SRRKAFEA-PRQITMLAWARDGSKLYGL--- 152 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT---EEEEEEEC-CSSCCCEEECTTSSCEEEE---
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC---cEEEEEeC-CCCcceeEECCCCCEEEEe---
Confidence 22567899999999988886 5799999998654 33444433 4567889999999777774
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCC-----------------------eEEEee
Q 040533 240 TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ-----------------------KLCLWK 296 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~-----------------------~i~i~d 296 (364)
++.|.+||+.+++....+........+.|+|++..++.... .++ .|.+||
T Consensus 153 --~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 225 (337)
T 1pby_B 153 --GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE-----SSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp --SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCT-----TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred --CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeecc-----CCCceeeeeeccccccccccccccccceEEEe
Confidence 57899999999998888765542334588999998765431 122 579999
Q ss_pred CCCCcee-eeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 297 YPHMTKW-GELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 297 ~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+.+++.. ..+..+...+.+++|+|+|++|+++ ++.|.+||+.+++....+.. ...+.+++|+|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~d 290 (337)
T 1pby_B 226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTD 290 (337)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTT
T ss_pred CCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCC
Confidence 9988765 2233455678899999999999988 79999999988776665543 456789999985
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=4.2e-23 Score=181.35 Aligned_cols=218 Identities=13% Similarity=0.128 Sum_probs=159.6
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc----------eee-----eeecCC
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK----------LIR-----NLEGHD 129 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~----------~~~-----~~~~~~ 129 (364)
+.+++|+.... .....+..+++++++.++++++.++ ++||+..... ... ....+.
T Consensus 23 ~~vri~~~~~~---------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (434)
T 2oit_A 23 KKVRIFDSPEE---------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMK 92 (434)
T ss_dssp CEEECSCCCSS---------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCS
T ss_pred eeEEecCCccc---------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCC
Confidence 57888764311 1234578999999999999998887 8998753210 011 011256
Q ss_pred CcEEEEEeecCCCCEEE----EeeCCCcEEEEEcccC-----cc-----eeeeeecccCcEEEEEEcCC-CCEEEEEeCC
Q 040533 130 KRVATASWNHWNGHILT----SGSQDKSIINHDVRVS-----NN-----VTSRINAHTAEVCGLKWSNE-GNLLASGGDD 194 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~----~~~~dg~i~~~d~~~~-----~~-----~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d 194 (364)
..|.+++|+| ++++|+ +|+.|+.|++||+.+. +. ....+.+|...|.+++|+|+ +.+|++++.|
T Consensus 93 ~~v~~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 93 FPIHHLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp SCEEEEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred CcccEEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence 6799999999 899999 7889999999999764 11 13455679999999999997 7899999999
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC--------CCeE
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK--------AQIC 266 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--------~~v~ 266 (364)
|+|++||++.. ..+....+|...|.+++|+|++.. +++++ .||.|++||++ ++....+..+ ..+.
T Consensus 172 g~v~iwD~~~~---~~~~~~~~~~~~v~~v~wspdg~~-lasgs--~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 172 GSIAVLQVTET---VKVCATLPSTVAVTSVCWSPKGKQ-LAVGK--QNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVL 244 (434)
T ss_dssp SCEEEEEESSS---EEEEEEECGGGCEEEEEECTTSSC-EEEEE--TTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEE
T ss_pred CeEEEEEcCCC---cceeeccCCCCceeEEEEcCCCCE-EEEEc--CCCcEEEEccC-CcccccccCCcccCCCCceeEE
Confidence 99999998865 334555668889999999999855 55554 79999999998 5555555332 2689
Q ss_pred EEEEcCCccceeeeccCC-ccCCCCeEEEeeCCCC
Q 040533 267 GLEWNRHHKEILSGHGFS-SSGDGQKLCLWKYPHM 300 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~-~~~~~~~i~i~d~~~~ 300 (364)
+++|++++.++++..... .......+++|++...
T Consensus 245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 999999888876543110 0011235999999764
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=5.2e-23 Score=188.39 Aligned_cols=262 Identities=11% Similarity=0.069 Sum_probs=183.9
Q ss_pred eecccCCCcc--EEEEEe-CCeEEEEECCCCceeeeeeecCCC-CCceEEEEcCCCCEEEEEec---CCcEEEEecCC--
Q 040533 48 SNMMDWGRNN--ILAIAL-GLELYLWKQENGEVQKLLKVTGED-DFPTSISWSQDAKTLAVGYM---ASKLQLWDAET-- 118 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~-~~~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~-- 118 (364)
+.++++++++ ++.++. ++.+.||++.+++..++. .|. ..+..++|+|| +++++++. +....+|.+..
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt---~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC---SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred hheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee---cccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 6677777763 444554 899999999777654333 444 68999999999 77777664 45556655433
Q ss_pred -cceeeeeecCCCcEEEEEeecCCCC-EEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC--
Q 040533 119 -SKLIRNLEGHDKRVATASWNHWNGH-ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD-- 194 (364)
Q Consensus 119 -~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 194 (364)
+... .+... ..+...+|+| +++ .+++.+.++.+.+||+.+++. .. +..+.. .+++|+|||++|++++.+
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~-~~-l~~~~~--~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVD-TGEAVVFTGATEDRVALYALDGGGL-RE-LARLPG--FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEE-CSSCEEEEEECSSCEEEEEEETTEE-EE-EEEESS--CEEEEEEETTEEEEEEEEET
T ss_pred CCccc-cccCC-CCceeeeeCC-CCCeEEEEecCCCCceEEEccCCcE-EE-eecCCC--ceEEECCCCCEEEEEEEcCC
Confidence 2222 33322 2345678888 654 444444555566999987653 22 323333 789999999999988877
Q ss_pred --CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCC--eEEEEECCCCeEEEEEec-CCCeEEEE
Q 040533 195 --NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG--CIKIWNVQKGTCIHSVDT-KAQICGLE 269 (364)
Q Consensus 195 --~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~-~~~v~~~~ 269 (364)
+.|++||+..+. ...+..+...+..++|+|||+.++ ++. .++ .|++||+.+++.. .+.. ...+..+.
T Consensus 173 ~~~~i~~~d~~~g~----~~~l~~~~~~~~~~~~SpDG~~l~-~~~--~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~ 244 (582)
T 3o4h_A 173 GRVSLFTSNLSSGG----LRVFDSGEGSFSSASISPGMKVTA-GLE--TAREARLVTVDPRDGSVE-DLELPSKDFSSYR 244 (582)
T ss_dssp TEEEEEEEETTTCC----CEEECCSSCEEEEEEECTTSCEEE-EEE--CSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC
T ss_pred CCeEEEEEcCCCCC----ceEeecCCCccccceECCCCCEEE-Ecc--CCCeeEEEEEcCCCCcEE-EccCCCcChhhhh
Confidence 789999987653 346677888899999999997666 443 577 8999999998877 4433 34455566
Q ss_pred --------EcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCc---EEEEE
Q 040533 270 --------WNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET---LRFWE 338 (364)
Q Consensus 270 --------~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~---i~vw~ 338 (364)
|+|+|..++++.. ++.+++|++ ++... .+.+.+.+++|+ +++++++++.+.. +.+|+
T Consensus 245 ~~~~~~~~~spdg~~~~~~~~------~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 245 PTAITWLGYLPDGRLAVVARR------EGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp CSEEEEEEECTTSCEEEEEEE------TTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred hccccceeEcCCCcEEEEEEc------CCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999966666644 899999999 55544 234678899999 9999998887754 66666
Q ss_pred ee
Q 040533 339 AF 340 (364)
Q Consensus 339 ~~ 340 (364)
..
T Consensus 313 ~~ 314 (582)
T 3o4h_A 313 SG 314 (582)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=1.1e-21 Score=167.85 Aligned_cols=238 Identities=8% Similarity=0.043 Sum_probs=175.3
Q ss_pred cCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEE-EEecCCcEEEEecCCcceeeeeecC
Q 040533 52 DWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLA-VGYMASKLQLWDAETSKLIRNLEGH 128 (364)
Q Consensus 52 ~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~ 128 (364)
++++++ +++.+.++.|++||..+++....... +....+..++|+|++++++ ++..++.|.+||+.+++....+...
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec-CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 444443 55566789999999999887655543 2223578999999998665 4456889999999999888776633
Q ss_pred C------CcEEEEEeecCCCCEEEEeeCC------------CcEEEEEcccCcce--eeeeecccCcEEEEEEcCCCCEE
Q 040533 129 D------KRVATASWNHWNGHILTSGSQD------------KSIINHDVRVSNNV--TSRINAHTAEVCGLKWSNEGNLL 188 (364)
Q Consensus 129 ~------~~v~~~~~~~~~~~~l~~~~~d------------g~i~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l 188 (364)
. ..+..++|+| ++++|++++.+ +.|.+||+.+++.. .... .+...+.+++|+|+++ +
T Consensus 85 ~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp CSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-E
T ss_pred cccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCCc-E
Confidence 2 2377899999 99999888865 89999999875421 2222 2344688999999999 5
Q ss_pred EEEeCCCeEEEEeCCCCCCCcceEEeccc---------------------------------------------------
Q 040533 189 ASGGDDNLVHVWDHSKMSSSKCLHRFRDH--------------------------------------------------- 217 (364)
Q Consensus 189 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------------------------------------------------- 217 (364)
++++. .|.+||+.+.+. +..+..+
T Consensus 162 ~~~~~--~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 162 YVAGP--DIYKMDVKTGKY---TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp EEESS--SEEEECTTTCCE---EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred EEccC--cEEEEeCCCCce---eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 55543 499999876432 2222111
Q ss_pred -----------------ccceeEEEEcc-CCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceee
Q 040533 218 -----------------RAAVKALAWCP-YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS 279 (364)
Q Consensus 218 -----------------~~~v~~~~~~~-~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 279 (364)
...+..++|+| +++.++++ ++.|.+||+.+++.+..+.....+..++|+|+++++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 311 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYL 311 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEE
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEE
Confidence 11345677889 88665553 68999999999999888887777889999999999888
Q ss_pred eccCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 280 GHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
+.. ++.|.+||..+++.+..+..+
T Consensus 312 ~~~------~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 312 GGT------FNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp ESB------SSEEEEEETTTTEEEEEEECS
T ss_pred ecC------CCeEEEEeccccceeeeeecC
Confidence 643 799999999999888776544
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.90 E-value=5.6e-22 Score=186.33 Aligned_cols=277 Identities=13% Similarity=0.124 Sum_probs=188.8
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCC-----CceEEEEcCCCCEEEEEecC---------CcEEE
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDD-----FPTSISWSQDAKTLAVGYMA---------SKLQL 113 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~d---------g~i~i 113 (364)
...+.|+|++.+.++.|+.|++||+.+++...++. +|.. ....++|||||++|+.++.+ +.+.+
T Consensus 19 ~~~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLE--NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CCCEEECSSSEEEEEETTEEEEEETTTCCEEEEEC--TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccccEECCCCcEEEEcCCcEEEEECCCCceEEEEe--chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 34688999764444349999999999998755543 4432 23458999999999998875 56789
Q ss_pred EecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcE-----------------
Q 040533 114 WDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEV----------------- 176 (364)
Q Consensus 114 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v----------------- 176 (364)
||+.+++.. .+..+...+...+||| +++.|+.+. ++.|++|++.++........++...+
T Consensus 97 ~d~~~~~~~-~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 97 YDLNKRQLI-TEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EETTTTEEC-CSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EECCCCcEE-EcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 999998754 4566778899999999 999998874 68999999987664332233333322
Q ss_pred EEEEEcCCCCEEEEEeCCC-eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC---
Q 040533 177 CGLKWSNEGNLLASGGDDN-LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK--- 252 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--- 252 (364)
..+.|||||+.|+.++.|. .+.+|++....... .+...+..+.+.+.|.. .....|++||+.+
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~------~~~~~~~~~~yp~~G~~-------~~~~~l~v~d~~~~~~ 240 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES------LQYPKTVRVPYPKAGAV-------NPTVKFFVVNTDSLSS 240 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT------CSSCEEEEEECCBTTSC-------CCEEEEEEEETTSCCS
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCC------CCCCcceeecCCCCcCc-------CCeeEEEEEECCCCCC
Confidence 3489999999999887554 48888753221111 23445566777766632 1345799999998
Q ss_pred Ce--EEEEEe-------cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc----ee--eec--ccccccee-
Q 040533 253 GT--CIHSVD-------TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT----KW--GEL--QHQTSRIL- 314 (364)
Q Consensus 253 ~~--~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~----~~--~~~--~~~~~~i~- 314 (364)
++ ....+. +...+..++|+|+|+.++.... ..+.+..|.+||+.+++ +. ..+ ..|...+.
T Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~--r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~ 318 (740)
T 4a5s_A 241 VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLR--RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR 318 (740)
T ss_dssp SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEE--SSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSS
T ss_pred CCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeC--CCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEcc
Confidence 73 223333 3345889999999996655422 12335679999999887 22 222 34555544
Q ss_pred ----EEeecCCCCEEE-EEeC-CC--cEEEEEeeCCCC
Q 040533 315 ----ELSQSPDGLTVV-SAAA-DE--TLRFWEAFGPSG 344 (364)
Q Consensus 315 ----~i~~~~~~~~l~-~~~~-dg--~i~vw~~~~~~~ 344 (364)
.+.|+|||+.|+ ..+. +| .|++|++.+++.
T Consensus 319 ~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 319 FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence 789999999877 6653 44 477778766544
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=1.3e-20 Score=162.10 Aligned_cols=261 Identities=10% Similarity=0.052 Sum_probs=176.9
Q ss_pred eecccCCCcc--EEEEEeC----CeEEEEECCC--CceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCC
Q 040533 48 SNMMDWGRNN--ILAIALG----LELYLWKQEN--GEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAET 118 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~----~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~ 118 (364)
...++|+|++ +++++.+ +.|.+|++.. ++...+.....+...+..+++ ++++|++++ .++.|.+|++..
T Consensus 52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~ 129 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQ 129 (361)
T ss_dssp CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT
T ss_pred CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC
Confidence 4567888864 4445543 7999998765 565555555555667788888 888777776 578999999975
Q ss_pred cceeeee------ec--------CCCcEEEEEeecCCCCEEEEee-CCCcEEEEEcccCcc------e------eeeeec
Q 040533 119 SKLIRNL------EG--------HDKRVATASWNHWNGHILTSGS-QDKSIINHDVRVSNN------V------TSRINA 171 (364)
Q Consensus 119 ~~~~~~~------~~--------~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~------~------~~~~~~ 171 (364)
...+..+ .+ +...+.+++|+| +++++++++ .++.|.+|++..... + ......
T Consensus 130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~ 208 (361)
T 3scy_A 130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA 208 (361)
T ss_dssp TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC
T ss_pred CCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC
Confidence 4333221 11 123468899999 888665554 578999999875442 1 111223
Q ss_pred ccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCCCcceEEec---ccccceeEEEEccCCCcEEEeecCCC-CCeEE
Q 040533 172 HTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSSSKCLHRFR---DHRAAVKALAWCPYQFNVLASGGGTQ-DGCIK 246 (364)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~-d~~i~ 246 (364)
+...+..++|+|+|+++++++ .++.|.+||+..... ..+..+. .+......++|+|+++.++++.. . ++.|.
T Consensus 209 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~--~~~~~i~ 285 (361)
T 3scy_A 209 PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR--LKADGVA 285 (361)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC--SSSCEEE
T ss_pred CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEeEEEecCCCCCCCcccEEECCCCCEEEEECC--CCCCEEE
Confidence 445678999999999887777 689999999874321 1222222 22344679999999987777664 4 68999
Q ss_pred EEECC--CCe--EEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEe--eCCCCceeeec-cccccceeEEeec
Q 040533 247 IWNVQ--KGT--CIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLW--KYPHMTKWGEL-QHQTSRILELSQS 319 (364)
Q Consensus 247 i~d~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~--d~~~~~~~~~~-~~~~~~i~~i~~~ 319 (364)
+|++. +++ .+..+.....+..++|+|+|++|+++. ..++.|.+| |..+++..... ..+...+.|+.|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~-----~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVAC-----RDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEE-----TTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEE-----CCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99985 444 444455555688999999999888875 237889996 44566655443 2244567888875
No 163
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.90 E-value=5.8e-20 Score=155.84 Aligned_cols=249 Identities=8% Similarity=0.106 Sum_probs=188.4
Q ss_pred CCCceEEEEcCCCCEEEEEecC------------------------CcEEEEecCCcceeeeee-cCCCcEEEEEeecCC
Q 040533 87 DDFPTSISWSQDAKTLAVGYMA------------------------SKLQLWDAETSKLIRNLE-GHDKRVATASWNHWN 141 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 141 (364)
-..+.+++++|+|+++++...+ +.|.+||..+++....+. .+-.....++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4568889999999888877766 479999999898876654 3445789999999 8
Q ss_pred CCEEEEeeCCCcEEEEEcccCcceeeee---------ecccCcEEEEEEcC-CCCEEEEEe-CCCeEEEEeCCCCCCCcc
Q 040533 142 GHILTSGSQDKSIINHDVRVSNNVTSRI---------NAHTAEVCGLKWSN-EGNLLASGG-DDNLVHVWDHSKMSSSKC 210 (364)
Q Consensus 142 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~~ 210 (364)
++++++...++.|++||.......+..+ ..+......++++| ++.++++.+ .++.|++||.. + ..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g---~~ 177 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-G---KF 177 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-S---CE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-C---CE
Confidence 9988888889999999986442223333 23445689999999 788888776 68999999943 2 33
Q ss_pred eEEecc----------cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec---CCCeEEEEEcCCccce
Q 040533 211 LHRFRD----------HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT---KAQICGLEWNRHHKEI 277 (364)
Q Consensus 211 ~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l 277 (364)
+..+.. +-.....++++|++..++++.. .++.|++||..+++.+..+.. ...+..++++| +..+
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~--~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~ 254 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR--ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLF 254 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEE
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC--CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEE
Confidence 444432 2234789999999557888765 789999999998998888853 35688999999 3332
Q ss_pred ee-eccCCccCCCCeEEEeeCCCCceeeecc---ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 278 LS-GHGFSSSGDGQKLCLWKYPHMTKWGELQ---HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 278 ~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
.. +..+.+...+..|++|+..+++.+..+. .+...+..++++|+|.++++...++.|++|++....
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence 22 2223334557799999999999988873 566778999999999888888899999999987643
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.90 E-value=5e-22 Score=172.67 Aligned_cols=284 Identities=10% Similarity=-0.009 Sum_probs=189.4
Q ss_pred EECCCCceeeeeeecCCCCCceE-----EEEcCCCCEEEEEec-CC--cEEEEecCCcceeeeeecCCCcEEEEEeecCC
Q 040533 70 WKQENGEVQKLLKVTGEDDFPTS-----ISWSQDAKTLAVGYM-AS--KLQLWDAETSKLIRNLEGHDKRVATASWNHWN 141 (364)
Q Consensus 70 w~~~~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 141 (364)
++..++.... .+..|...... .+|+|||++|+.++. +| .|.+||+.+++.......+...+..+.|+| +
T Consensus 15 ~~~~~g~~~~--~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-d 91 (388)
T 3pe7_A 15 QDASTGAQVT--RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP-D 91 (388)
T ss_dssp ECTTTCCEEE--ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT-T
T ss_pred ecCCCCcceE--EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC-C
Confidence 4555555433 33345444444 789999999999887 66 488889998887777666666665778999 9
Q ss_pred CCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEE--EcCCCCEEEEE----------------------eCCCeE
Q 040533 142 GHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLK--WSNEGNLLASG----------------------GDDNLV 197 (364)
Q Consensus 142 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~----------------------~~d~~i 197 (364)
++.|+.++.++.|++||+.+++. ......+...+.... ++|++++++.. ..+..|
T Consensus 92 g~~l~~~~~~~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 92 DDALFYVKDGRNLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp SSEEEEEETTTEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 99999999999999999997764 333444545444333 48999888742 245789
Q ss_pred EEEeCCCCCCCcceEEecccccceeEEEEcc-CCCcEEEeecCCC---CCeEEEEECCCCeEEEEEecC--CCeEEEEEc
Q 040533 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCP-YQFNVLASGGGTQ---DGCIKIWNVQKGTCIHSVDTK--AQICGLEWN 271 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~ 271 (364)
.+||+.++. ...+..+...+..+.|+| +++.++.+..+.. ...|.++|...++........ ..+..+.|+
T Consensus 171 ~~~d~~~g~----~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 171 MRVDLKTGE----STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp EEEETTTCC----EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEEC
T ss_pred EEEECCCCc----eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceEC
Confidence 999987653 344445667789999999 9876666543111 347888898766544333333 247788999
Q ss_pred CCccceeeeccCCccCCCCeEEEeeCCCCcee--eeccccccc---eeEEeecCCCCEEEEE---------eCCCcEEEE
Q 040533 272 RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW--GELQHQTSR---ILELSQSPDGLTVVSA---------AADETLRFW 337 (364)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~---i~~i~~~~~~~~l~~~---------~~dg~i~vw 337 (364)
|+|+.|+..... .+..+..|++||+.+++.. ..+..+... ...+.|+|||+.|+.. ..+..|++|
T Consensus 247 pdg~~l~~~~~~-~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~ 325 (388)
T 3pe7_A 247 PDGSALVYVSYL-KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF 325 (388)
T ss_dssp TTSSCEEEEEEE-TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEE
T ss_pred CCCCEEEEEecC-CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence 999988654321 0111235999999988743 233321111 2234799999988754 456689999
Q ss_pred EeeCCCCCcceeccCC-----------ceeeeeeccC
Q 040533 338 EAFGPSGSGDFVSHLD-----------GLLSLKVSPI 363 (364)
Q Consensus 338 ~~~~~~~~~~~~~~~~-----------~v~~~~~sp~ 363 (364)
|+.+++. ..+..+.. .+.+++|||.
T Consensus 326 d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spD 361 (388)
T 3pe7_A 326 NMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPD 361 (388)
T ss_dssp ETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTT
T ss_pred eccCCce-EEeccccCcccccccccccCCCCccCCCC
Confidence 9987654 44555555 5788899985
No 165
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.89 E-value=1.3e-20 Score=164.18 Aligned_cols=283 Identities=12% Similarity=0.043 Sum_probs=186.3
Q ss_pred eeecccCCCcc-EEEEEeC----CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 47 YSNMMDWGRNN-ILAIALG----LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+...++|+|++ .++...+ ..|++||+.+++...+.. ++......+.|+|||++|+.++.++.|++||+.+++.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~--~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE--GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC--SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec--CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence 35677899864 4444332 379999999887644432 2222233478999999999999888999999998876
Q ss_pred eeeeecCCCcEEE-------------------EEeecCCCCEEEEe-----eCCCcEEEEEcccCcceeeeeecccCcEE
Q 040533 122 IRNLEGHDKRVAT-------------------ASWNHWNGHILTSG-----SQDKSIINHDVRVSNNVTSRINAHTAEVC 177 (364)
Q Consensus 122 ~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~~dg~i~~~d~~~~~~~~~~~~~~~~~v~ 177 (364)
......+...... +.|+| +++.++.. ..+..|.+||+.+++. ..+..+...+.
T Consensus 115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~~~~~~~~~~ 191 (396)
T 3c5m_A 115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGEL--EVIHQDTAWLG 191 (396)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCE--EEEEEESSCEE
T ss_pred EEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcE--EeeccCCcccc
Confidence 6555544432222 34566 66655544 3556899999987653 23335667889
Q ss_pred EEEEcC-CCCEEEEEeCC------CeEEEEeCCCCCCCcceEEeccc--ccceeEEEEccCCCcEEEeec--CCCCCeEE
Q 040533 178 GLKWSN-EGNLLASGGDD------NLVHVWDHSKMSSSKCLHRFRDH--RAAVKALAWCPYQFNVLASGG--GTQDGCIK 246 (364)
Q Consensus 178 ~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~--g~~d~~i~ 246 (364)
.+.|+| ++..|+..+.+ ..|.+||+.... ...+..+ ...+..++|+|+++.+++... +..++.|+
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN----VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC----CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc----eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 999999 78877766543 368888875432 2222222 235788999999987766542 11125599
Q ss_pred EEECCCCeEEEEEecCCCeEEEEEcC-CccceeeeccC----------CccCCCCeEEEeeCCCCceeeecccccc----
Q 040533 247 IWNVQKGTCIHSVDTKAQICGLEWNR-HHKEILSGHGF----------SSSGDGQKLCLWKYPHMTKWGELQHQTS---- 311 (364)
Q Consensus 247 i~d~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~----------~~~~~~~~i~i~d~~~~~~~~~~~~~~~---- 311 (364)
+||+.+++......... .. +.|+| +|+.++.+..- .....+..|++||+.+++.. .+..+..
T Consensus 268 ~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~ 344 (396)
T 3c5m_A 268 KANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDV 344 (396)
T ss_dssp EECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCC
T ss_pred EEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcccc
Confidence 99999887654433332 33 89999 99987764310 00013578999999877643 3444433
Q ss_pred -------ceeEEeecCCCCEEEEEeC-CCcEEEEEeeC
Q 040533 312 -------RILELSQSPDGLTVVSAAA-DETLRFWEAFG 341 (364)
Q Consensus 312 -------~i~~i~~~~~~~~l~~~~~-dg~i~vw~~~~ 341 (364)
.+..++|+|+|+.|+.++. ++...+|.+.-
T Consensus 345 ~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 345 LDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADV 382 (396)
T ss_dssp BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred ccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEE
Confidence 2567899999998877764 56666776653
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.89 E-value=7.6e-21 Score=163.11 Aligned_cols=283 Identities=8% Similarity=0.027 Sum_probs=199.4
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec----------CCcEEEEecCCcceeeeeecC-----
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM----------ASKLQLWDAETSKLIRNLEGH----- 128 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~----- 128 (364)
|+.|++||..+++..... ..+..+ .++|+|||++++++.. ++.|.+||..+++.+..+...
T Consensus 30 d~~v~v~D~~t~~~~~~i--~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMV--PTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GCEEEEEETTTCCEEEEE--ECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred cCeEEEEECCCCeEEEEe--cCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 679999999998875443 344433 8999999999998863 567999999999888877643
Q ss_pred -CCcEEEEEeecCCCCEEEEeeC--CCcEEEEEcccCcceeee-eecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCC
Q 040533 129 -DKRVATASWNHWNGHILTSGSQ--DKSIINHDVRVSNNVTSR-INAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 129 -~~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~ 203 (364)
......++++| ++++|+++.. ++.|.+||+.+.+. ... +. ... ...+.+.|++ ..+++.+.||.+.+|++.
T Consensus 106 ~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 106 GLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDY-VEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp BCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEE-EEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred cCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcE-EEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 23466789999 9999988864 57999999987753 333 32 222 2335567765 677888899999999875
Q ss_pred CCCCCcceE------EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe--EEEEEecC-----------CC
Q 040533 204 KMSSSKCLH------RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT--CIHSVDTK-----------AQ 264 (364)
Q Consensus 204 ~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~-----------~~ 264 (364)
... +... .+.....++ .+.+.+++..++... .++.+.++|+.... ....+... ..
T Consensus 182 ~~g--~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~---~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g 255 (361)
T 2oiz_A 182 EDG--KVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS---YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG 255 (361)
T ss_dssp TTS--SEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB---TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC
T ss_pred CCC--cEeeeccccceEcCCCCce-EEEecccCCEEEEEe---CCCeEEEEEecCCCceecccccccCccccccccccCC
Confidence 422 1121 111112221 233456665555543 58899999997543 22222211 11
Q ss_pred eEEEEEcCCccceeeeccCCc-----cCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 265 ICGLEWNRHHKEILSGHGFSS-----SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~-----~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
...++++|+++.+++...... ....+.|.+||+.+++.+.++..+. +.+++|+|||++|++++. +.|.+||.
T Consensus 256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 123789999888876532100 0114589999999999999998776 899999999999999887 99999999
Q ss_pred eCC--CCCcceeccCCceeeeeeccC
Q 040533 340 FGP--SGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 340 ~~~--~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.++ +.+..+..+......++++|.
T Consensus 333 ~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 333 SQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp SSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred CCCcceeeEEeccCCCCcEEEEecCC
Confidence 998 777776667778899999985
No 167
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=3e-21 Score=181.19 Aligned_cols=289 Identities=9% Similarity=0.065 Sum_probs=188.5
Q ss_pred eecccCCCcc-EEEEE-e---------CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec
Q 040533 48 SNMMDWGRNN-ILAIA-L---------GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA 116 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~-~---------~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 116 (364)
+..++|||++ .++.+ . ++.|++||+.+++......+ ...+.+++|||||+.||++. ++.|++|++
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~ 137 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQR 137 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESS
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeC
Confidence 5678899974 44443 3 58999999999876211222 24688999999999999985 789999999
Q ss_pred CCcceeeee-ecCCCcE-----------------EEEEeecCCCCEEEEeeCCC--------------------------
Q 040533 117 ETSKLIRNL-EGHDKRV-----------------ATASWNHWNGHILTSGSQDK-------------------------- 152 (364)
Q Consensus 117 ~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~~l~~~~~dg-------------------------- 152 (364)
.+++..... .++...| .+++|+| +++.|++++.|.
T Consensus 138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 888765433 2222222 4899999 999999887652
Q ss_pred --------cEEEEEcccCcce--e-----eeeecccCcEEEEEEcCCCCEEEEEeCC----CeEEEEe----CCCCCCCc
Q 040533 153 --------SIINHDVRVSNNV--T-----SRINAHTAEVCGLKWSNEGNLLASGGDD----NLVHVWD----HSKMSSSK 209 (364)
Q Consensus 153 --------~i~~~d~~~~~~~--~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd----~~~~~~~~ 209 (364)
.|++||+.++... . ..+..|...+..++|+||++++++.... ..|.+|| +.++....
T Consensus 217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence 7889999866531 1 1133577889999999998777764432 2488899 66543322
Q ss_pred ceE-Eeccccccee-----EEEEccCCCcEEEe-ecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeec
Q 040533 210 CLH-RFRDHRAAVK-----ALAWCPYQFNVLAS-GGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 210 ~~~-~~~~~~~~v~-----~~~~~~~~~~~~~~-~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 281 (364)
... ....|...+. .+.|+|+|+.++.. ........|.+||+.+++. ..+. ....+..+.++ +++.++...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~~i~~~~ 374 (719)
T 1z68_A 297 TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQDSLFYSS 374 (719)
T ss_dssp GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSSEEEEEE
T ss_pred EEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCCEEEEEE
Confidence 221 0134566666 88999999876653 3211234688888877763 3333 33457777777 777776553
Q ss_pred cCCccCCCCeEEEeeCCC--Cc-eeeecc----ccccceeEEeecCCCCEEEE-EeCC--CcEEEEEeeCCCC
Q 040533 282 GFSSSGDGQKLCLWKYPH--MT-KWGELQ----HQTSRILELSQSPDGLTVVS-AAAD--ETLRFWEAFGPSG 344 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~--~~-~~~~~~----~~~~~i~~i~~~~~~~~l~~-~~~d--g~i~vw~~~~~~~ 344 (364)
... ...++...+|.+.. +. ....+. +|...+..+.|+|++++++. ++.+ ..+.+||+.+++.
T Consensus 375 ~~~-~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 375 NEF-EEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp SCG-GGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred ecC-CCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 200 01146677777653 32 123332 25567888999999987764 3333 4688898877654
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.88 E-value=4.6e-19 Score=147.31 Aligned_cols=241 Identities=13% Similarity=0.224 Sum_probs=176.6
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec------CCCcEEEEEeecCCCCEEEEeeC-CCcEEEE
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG------HDKRVATASWNHWNGHILTSGSQ-DKSIINH 157 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~ 157 (364)
++-..+.+++++++++++++...++.|.+||.+ ++.+..+.. +...+..+++.+.+++++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999987 665555532 33568899995426776666643 7899999
Q ss_pred EcccCcceeeeee-cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec--ccccceeEEEEccCCCcEE
Q 040533 158 DVRVSNNVTSRIN-AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR--DHRAAVKALAWCPYQFNVL 234 (364)
Q Consensus 158 d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~ 234 (364)
|. +++. ...+. .+...+.+++++++++++++...++.|.+||... +.+..+. .+...+..++++|++. ++
T Consensus 106 d~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~p~~i~~~~~g~-l~ 178 (286)
T 1q7f_A 106 NQ-YGQF-VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG----NVLHKFGCSKHLEFPNGVVVNDKQE-IF 178 (286)
T ss_dssp CT-TSCE-EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEEECTTTCSSEEEEEECSSSE-EE
T ss_pred CC-CCcE-EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC----CEEEEeCCCCccCCcEEEEECCCCC-EE
Confidence 94 3443 33332 3445789999999999888877889999999542 2344432 3345688999999984 66
Q ss_pred EeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCccceeeeccCCccCCCC-eEEEeeCCCCceeeeccccc
Q 040533 235 ASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKEILSGHGFSSSGDGQ-KLCLWKYPHMTKWGELQHQT 310 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~~~~-~i~i~d~~~~~~~~~~~~~~ 310 (364)
++.. .++.|++||. +++.+..+... ..+..++++++|.++++... ++ .|.+|+. +++.+..+..+.
T Consensus 179 v~~~--~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~------~~~~i~~~~~-~g~~~~~~~~~~ 248 (286)
T 1q7f_A 179 ISDN--RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNH------NNFNLTIFTQ-DGQLISALESKV 248 (286)
T ss_dssp EEEG--GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECS------SSCEEEEECT-TSCEEEEEEESS
T ss_pred EEEC--CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCC------CCEEEEEECC-CCCEEEEEcccC
Confidence 6654 6899999997 45666666543 46889999999987777642 54 9999995 566666665543
Q ss_pred --cceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC
Q 040533 311 --SRILELSQSPDGLTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 311 --~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
..+.+++++|+|+++++ +.|+.|++|++.....
T Consensus 249 ~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 249 KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 24779999999987776 6799999999865443
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.87 E-value=4.4e-20 Score=171.67 Aligned_cols=282 Identities=8% Similarity=-0.024 Sum_probs=184.9
Q ss_pred eeecccCCCccEEEEEe----CCeEEEEECCCCceeeeeeecCCCCCce---------EEEEc--CCCCE-EEEEec-CC
Q 040533 47 YSNMMDWGRNNILAIAL----GLELYLWKQENGEVQKLLKVTGEDDFPT---------SISWS--QDAKT-LAVGYM-AS 109 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~----~~~i~iw~~~~~~~~~~~~~~~~~~~v~---------~~~~s--~~~~~-l~~~~~-dg 109 (364)
.+..++++++.++.+.. ++...||....+.. ...+..+...+. ...|+ |||+. |+.++. +.
T Consensus 25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~ 102 (662)
T 3azo_A 25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA--EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQ 102 (662)
T ss_dssp CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC--EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTC
T ss_pred ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC--cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCC
Confidence 46667778877655544 67888998543322 223335555555 56665 99998 777653 45
Q ss_pred cEEEEecC--Ccceeeeeec-----CCCcEEEEEeecCCCCEEEEeeCC----------CcEEEEEcccC-----cceee
Q 040533 110 KLQLWDAE--TSKLIRNLEG-----HDKRVATASWNHWNGHILTSGSQD----------KSIINHDVRVS-----NNVTS 167 (364)
Q Consensus 110 ~i~iw~~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~~~d~~~~-----~~~~~ 167 (364)
.|.++++. .......+.. |...+..++|+| +++.|++++.+ ..|++||+.+. .. ..
T Consensus 103 ~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~ 180 (662)
T 3azo_A 103 RLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VR 180 (662)
T ss_dssp CEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SE
T ss_pred eEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-ee
Confidence 67777765 2033445554 567889999999 99999988876 58999999862 22 33
Q ss_pred eee-cccCcEEEEEEcCCCCEEEEEeCC--------CeEEEEeCC-CCCCCcceEEecccccceeEEEEccCCCcEEEee
Q 040533 168 RIN-AHTAEVCGLKWSNEGNLLASGGDD--------NLVHVWDHS-KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 168 ~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
.+. .+...+..++|+|||++|+.++.+ ..|++||+. ++...+.......+...+..+.|+|+|+ +++++
T Consensus 181 ~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~ 259 (662)
T 3azo_A 181 ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVAT 259 (662)
T ss_dssp ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEE
T ss_pred EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEE
Confidence 444 555678889999999999987754 379999987 3311122233334467899999999997 66665
Q ss_pred cCCCCC--eEEEEECCCCeEEEEEecCCC---------eEEEEEcCCccceeeeccCCccCCCCeEEEe--eCCCCceee
Q 040533 238 GGTQDG--CIKIWNVQKGTCIHSVDTKAQ---------ICGLEWNRHHKEILSGHGFSSSGDGQKLCLW--KYPHMTKWG 304 (364)
Q Consensus 238 ~g~~d~--~i~i~d~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~--d~~~~~~~~ 304 (364)
. .++ .|.+||+.+++.......+.. +..++|+|+++.++++. . +.+++| |..+++ +.
T Consensus 260 ~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~------~-~~~~l~~~d~~~~~-~~ 329 (662)
T 3azo_A 260 D--RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG------K-GAAVLGILDPESGE-LV 329 (662)
T ss_dssp C--TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB------S-SSCEEEEEETTTTE-EE
T ss_pred C--CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE------c-CccEEEEEECCCCc-EE
Confidence 4 667 677778767765544333222 45788889998887763 3 666666 655554 66
Q ss_pred eccccccceeEE-eecCCCCEEEEEeCCCcEEEE--EeeCCC
Q 040533 305 ELQHQTSRILEL-SQSPDGLTVVSAAADETLRFW--EAFGPS 343 (364)
Q Consensus 305 ~~~~~~~~i~~i-~~~~~~~~l~~~~~dg~i~vw--~~~~~~ 343 (364)
.+..|...+..+ +++++.-++++++.+....+| |+.+++
T Consensus 330 ~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 330 DAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp ECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 777777777777 554443344455656555555 444544
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.86 E-value=1.6e-18 Score=147.27 Aligned_cols=264 Identities=9% Similarity=0.076 Sum_probs=183.8
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
+.++.|+++. ++.++.++.+..|. ++. ...+..+...+.+++|+|++++++++..++.|.+||.++++.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTIT---AEP--WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEE---CEE--EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cceeeecCCccceeEEeecccCcccc---cce--eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 5566777753 44446677888882 222 2334466677899999999998888888899999999888766554
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCC----CcEEEEEcccCcceeeeee--cccCcEEEEEEcCCCCEEEEEeC------
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQD----KSIINHDVRVSNNVTSRIN--AHTAEVCGLKWSNEGNLLASGGD------ 193 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~------ 193 (364)
..+...+.+++++| +++++++...+ +.|.+||..++.. ...+. .+...+..++++|+++++++...
T Consensus 83 ~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 83 VSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNL-QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp ECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSC-EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEE-EEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 45667899999999 88888877666 6899999876653 21221 23457899999999987776653
Q ss_pred CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-CeEEEEE------e--cCCC
Q 040533 194 DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-GTCIHSV------D--TKAQ 264 (364)
Q Consensus 194 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~------~--~~~~ 264 (364)
.+.|..+|..... ...+......+..++|+|+++.++++.. .++.|.+||+.+ +.....+ . ....
T Consensus 161 ~~~l~~~~~~~~~----~~~~~~~~~~~~~i~~~~dg~~l~v~~~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~ 234 (333)
T 2dg1_A 161 LGGVYYVSPDFRT----VTPIIQNISVANGIALSTDEKVLWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGHEG 234 (333)
T ss_dssp CEEEEEECTTSCC----EEEEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSE
T ss_pred CceEEEEeCCCCE----EEEeecCCCcccceEECCCCCEEEEEeC--CCCeEEEEEecCCCcCcccccceEEEecCCCCC
Confidence 3556666654321 2223233445788999999976777654 578999999964 3322111 1 1235
Q ss_pred eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccccc------ceeEEeecCCCCEEEEEeCC
Q 040533 265 ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTS------RILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~------~i~~i~~~~~~~~l~~~~~d 331 (364)
+..++++++|.+.++... ++.|.+||. +++.+..+..+.. .+.+++|+|+++.|+.++.+
T Consensus 235 ~~~i~~d~~G~l~v~~~~------~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 235 PDSCCIDSDDNLYVAMYG------QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEEEEBTTCCEEEEEET------TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCceEECCCCCEEEEEcC------CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 788999999987776543 689999998 5666666654432 68999999998777766555
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.85 E-value=1.8e-19 Score=167.48 Aligned_cols=270 Identities=10% Similarity=-0.019 Sum_probs=184.8
Q ss_pred ecCCCCCceEEEEcCCCCEEEEE--ecCCcEEEEecCCcceeeeeecCCCcEE---------EEEee--cCCCCE-EEEe
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVG--YMASKLQLWDAETSKLIRNLEGHDKRVA---------TASWN--HWNGHI-LTSG 148 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~~-l~~~ 148 (364)
+.+|...+..++|++++-+++.. ..++...||....+.....+..+...+. ...|+ | +++. |+.+
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP-Dg~~~la~~ 97 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRP-AGGPLLVFT 97 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCS-SSSCEEEEE
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeec-CCCeEEEEE
Confidence 34688899999999876666666 4578899998655555666666766665 56666 8 7777 6655
Q ss_pred e-CCCcEEEEEcc--c-Ccceeeeeec-----ccCcEEEEEEcCCCCEEEEEeCC----------CeEEEEeCCCCC--C
Q 040533 149 S-QDKSIINHDVR--V-SNNVTSRINA-----HTAEVCGLKWSNEGNLLASGGDD----------NLVHVWDHSKMS--S 207 (364)
Q Consensus 149 ~-~dg~i~~~d~~--~-~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------~~i~iwd~~~~~--~ 207 (364)
+ .+..|.++++. . +. ...+.. |...+..++|+|||+.|++++.+ ..|++||+.... .
T Consensus 98 ~~~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred ECCCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 4 35667777765 2 32 333334 56778999999999999998876 589999987610 0
Q ss_pred CcceEEec-ccccceeEEEEccCCCcEEEeecCC-----CCCeEEEEECC-CC---eEEEEEec-CCCeEEEEEcCCccc
Q 040533 208 SKCLHRFR-DHRAAVKALAWCPYQFNVLASGGGT-----QDGCIKIWNVQ-KG---TCIHSVDT-KAQICGLEWNRHHKE 276 (364)
Q Consensus 208 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~-----~d~~i~i~d~~-~~---~~~~~~~~-~~~v~~~~~~~~~~~ 276 (364)
......+. .+...+..++|+|+|+.++.+.... ....|.+||+. ++ +....... ...+..+.|+|+|++
T Consensus 176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 01234444 5566788899999998776655300 01479999998 56 44444443 467899999999996
Q ss_pred eeeeccCCccCCCC--eEEEeeCCCCceeeeccccccc--------eeEEeecCCCCEEEEEeCCCcEEEEEeeCC-CCC
Q 040533 277 ILSGHGFSSSGDGQ--KLCLWKYPHMTKWGELQHQTSR--------ILELSQSPDGLTVVSAAADETLRFWEAFGP-SGS 345 (364)
Q Consensus 277 l~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~--------i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~-~~~ 345 (364)
++++.. ++ .|++||..+++.......+... +..++|+|+++++++++. +.+++|.+... ...
T Consensus 256 ~~~~~~------~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~ 328 (662)
T 3azo_A 256 IVATDR------TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL 328 (662)
T ss_dssp EEEECT------TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE
T ss_pred EEEECC------CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE
Confidence 655532 55 7888887677655444433222 567889999999999998 99999966532 335
Q ss_pred cceeccCCceeee-eecc
Q 040533 346 GDFVSHLDGLLSL-KVSP 362 (364)
Q Consensus 346 ~~~~~~~~~v~~~-~~sp 362 (364)
..+..|.+.+.++ ++++
T Consensus 329 ~~l~~~~~~~~~~~s~~~ 346 (662)
T 3azo_A 329 VDAAGPWTEWAATLTVSG 346 (662)
T ss_dssp EECCSSCCEEEEEEEEET
T ss_pred EEecCCCCeEEEEEecCC
Confidence 5566666667766 5443
No 172
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.85 E-value=1.3e-20 Score=177.14 Aligned_cols=254 Identities=12% Similarity=0.028 Sum_probs=174.6
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCc-----EEEEEeecCCCCEEEEeeCC---------Cc
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKR-----VATASWNHWNGHILTSGSQD---------KS 153 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~d---------g~ 153 (364)
....+++|+|||++++++ ||.|++||+.+++....+..|... ...++|+| ++++|+.++.+ +.
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceE
Confidence 346689999999988886 899999999999887777776533 23478899 99999998876 56
Q ss_pred EEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc--------------
Q 040533 154 IINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA-------------- 219 (364)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------------- 219 (364)
+.+||+.+++ ...+..+...+...+|||||+.||.+. ++.|++||+..+...+ + +..++..
T Consensus 94 ~~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~-l-t~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 94 YDIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR-I-TWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp EEEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-C-CSCCBTTTEEESBCCHHHHHH
T ss_pred EEEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE-E-cCCCCccceecCcccccccch
Confidence 6799998776 334566778899999999999999885 6899999987654211 1 1112221
Q ss_pred ---ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEee
Q 040533 220 ---AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 220 ---~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d 296 (364)
....+.|+|||+.++.... .++.+.+|++....... .....+..+.+.+.|... ....|++||
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~--d~~~v~~~~~~~~~~~~--~~~~~~~~~~yp~~G~~~----------~~~~l~v~d 234 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQF--NDTEVPLIEYSFYSDES--LQYPKTVRVPYPKAGAVN----------PTVKFFVVN 234 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEE--ECTTCCEEEEEECCSTT--CSSCEEEEEECCBTTSCC----------CEEEEEEEE
T ss_pred hcCCCcceEECCCCCEEEEEEE--cccCCceEEEEeecCCC--CCCCcceeecCCCCcCcC----------CeeEEEEEE
Confidence 1235899999977766543 45557777753111000 112335566666655421 145799999
Q ss_pred CCC---Cc--eeeecc------ccccceeEEeecCCCCEEEEEeC----CCcEEEEEeeCCC----C--Ccce--eccCC
Q 040533 297 YPH---MT--KWGELQ------HQTSRILELSQSPDGLTVVSAAA----DETLRFWEAFGPS----G--SGDF--VSHLD 353 (364)
Q Consensus 297 ~~~---~~--~~~~~~------~~~~~i~~i~~~~~~~~l~~~~~----dg~i~vw~~~~~~----~--~~~~--~~~~~ 353 (364)
+.+ ++ ....+. +|...+..++|+|||+.++.... +..|++||+.+++ . ...+ .+|..
T Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~ 314 (740)
T 4a5s_A 235 TDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTG 314 (740)
T ss_dssp TTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSS
T ss_pred CCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCc
Confidence 998 73 223333 37788999999999997666532 3479999999987 1 2223 34555
Q ss_pred cee-----eeeeccC
Q 040533 354 GLL-----SLKVSPI 363 (364)
Q Consensus 354 ~v~-----~~~~sp~ 363 (364)
.|. .++|||.
T Consensus 315 ~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 315 WVGRFRPSEPHFTLD 329 (740)
T ss_dssp CSSSSSCCCCEECTT
T ss_pred eEccCcCCCceEcCC
Confidence 544 7888885
No 173
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=3.2e-19 Score=153.62 Aligned_cols=243 Identities=10% Similarity=0.074 Sum_probs=164.4
Q ss_pred eecccCCCcc--EEEEEeCCeEEEEECC-CCceeeeeeecCCCCCceEEEEcCCCCE--EEEEe-------------cCC
Q 040533 48 SNMMDWGRNN--ILAIALGLELYLWKQE-NGEVQKLLKVTGEDDFPTSISWSQDAKT--LAVGY-------------MAS 109 (364)
Q Consensus 48 ~~~~~~~~~~--~~~~~~~~~i~iw~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~-------------~dg 109 (364)
...++|+|++ +++++.+ .|.+|++. +++.........+ +.+.+++|+|+|++ ++++. .+|
T Consensus 42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g 119 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence 5567788864 4444555 99999997 7766544333222 23677999999994 44543 588
Q ss_pred cEEEEecC-Ccceeeeee----cCCCcEEEEEeecCCCCEEEEeeC-CCcEEEEEcc-cCcce-eeeee--cccCcEEEE
Q 040533 110 KLQLWDAE-TSKLIRNLE----GHDKRVATASWNHWNGHILTSGSQ-DKSIINHDVR-VSNNV-TSRIN--AHTAEVCGL 179 (364)
Q Consensus 110 ~i~iw~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~-~~~~~-~~~~~--~~~~~v~~~ 179 (364)
.+.+|++. +++....+. .+...+.+++|+| ++++|++++. ++.|.+||+. +++.. ...+. .|...+..+
T Consensus 120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~ 198 (365)
T 1jof_A 120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV 198 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe
Confidence 99999997 465544443 2456799999999 8988877654 6799999997 55421 12222 235678999
Q ss_pred EEcCCCCEEEEEeC-CCeEEEEeCCCCCCCcc------eEEec----cccc------ceeEEE-EccCCCcEEEeecCCC
Q 040533 180 KWSNEGNLLASGGD-DNLVHVWDHSKMSSSKC------LHRFR----DHRA------AVKALA-WCPYQFNVLASGGGTQ 241 (364)
Q Consensus 180 ~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~------~~~~~----~~~~------~v~~~~-~~~~~~~~~~~~~g~~ 241 (364)
+|+|+|+++++++. ++.|.+|++.... ++. +..+. ++.. .+..++ |+|+++.++++..+ .
T Consensus 199 ~~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~-~ 276 (365)
T 1jof_A 199 AMHPTGNYLYALMEAGNRICEYVIDPAT-HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA-N 276 (365)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTT-CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE-S
T ss_pred EECCCCCEEEEEECCCCeEEEEEEeCCC-CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC-C
Confidence 99999999888775 6899999865311 111 11111 1122 478999 99999877765431 1
Q ss_pred C----CeEEEEECC-CCeEEEE---Ee-cCCCeEEEEEcC---CccceeeeccCCccCCCCeEEEeeCCCC
Q 040533 242 D----GCIKIWNVQ-KGTCIHS---VD-TKAQICGLEWNR---HHKEILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 242 d----~~i~i~d~~-~~~~~~~---~~-~~~~v~~~~~~~---~~~~l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
+ +.|.+|++. +++.... .. .......++|+| +|++|+++.. +++.|.+|++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~-----~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD-----QEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS-----SSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc-----CCCeEEEEEEchh
Confidence 2 289999996 5665432 32 234567899999 8999988742 3589999998655
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.85 E-value=1.7e-18 Score=148.44 Aligned_cols=262 Identities=8% Similarity=0.049 Sum_probs=186.1
Q ss_pred cccCCCcc-EE-EEE----------eCCeEEEEECCCCceeeeeeecC----CCCCceEEEEcCCCCEEEEEec--CCcE
Q 040533 50 MMDWGRNN-IL-AIA----------LGLELYLWKQENGEVQKLLKVTG----EDDFPTSISWSQDAKTLAVGYM--ASKL 111 (364)
Q Consensus 50 ~~~~~~~~-~~-~~~----------~~~~i~iw~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~--dg~i 111 (364)
.++++|++ .+ ++. .++.|.+||..+++......+.. +...+..++++|||++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 67888864 33 333 25679999999888765555421 2356788999999999998874 5789
Q ss_pred EEEecCCcceeee-eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee------eeecccCcEEEEEEcCC
Q 040533 112 QLWDAETSKLIRN-LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS------RINAHTAEVCGLKWSNE 184 (364)
Q Consensus 112 ~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~------~~~~~~~~v~~~~~~~~ 184 (364)
.+||+.+++.+.. +.. .. ...+.+.|.....+++.+.||.+.+|++........ .+.....++ .+.++++
T Consensus 134 ~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~ 210 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALD 210 (361)
T ss_dssp EEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEEC
T ss_pred EEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEeccc
Confidence 9999999988877 553 22 233566774457888899999999999875333231 112222222 2334567
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEecc------c----ccceeEEEEccCCCcEEEeec--CC------CCCeEE
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD------H----RAAVKALAWCPYQFNVLASGG--GT------QDGCIK 246 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~----~~~v~~~~~~~~~~~~~~~~~--g~------~d~~i~ 246 (364)
+..++..+.++.|.++|+..... .....+.. + ......++|+|+++.++++.. +. ..+.|.
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~ 289 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIW 289 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCc-eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEE
Confidence 77777778899999999864321 11121110 0 111223789999888777642 00 135899
Q ss_pred EEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC--ceeeeccccccceeEEeecCCCC
Q 040533 247 IWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM--TKWGELQHQTSRILELSQSPDGL 323 (364)
Q Consensus 247 i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~~ 323 (364)
+||+.+++.+..+..+. ..+++|+|+|++|+++. ++.|.+||..++ +.+.++..+......++++|+|+
T Consensus 290 viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n-------~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 290 VMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLD-------GGNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEETTTTEEEEEEECTT-CCEEEEETTTTEEEEEC-------SSCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeC-------CCeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999999998888 99999999999988763 389999999999 99988766677788999999986
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.85 E-value=1.7e-18 Score=148.06 Aligned_cols=254 Identities=11% Similarity=0.085 Sum_probs=169.7
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC---C--cEEEEecCCcceeeeeecCCCcEEEEEee
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA---S--KLQLWDAETSKLIRNLEGHDKRVATASWN 138 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~ 138 (364)
++.|++||+.+++...+ ..+..++|||||++||.++.+ + .|.+|++.+++....... .. +..++|+
T Consensus 42 ~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~ws 112 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWN 112 (347)
T ss_dssp EEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEEC
T ss_pred cceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeEC
Confidence 56899999998875443 457899999999999987754 3 388888888776555443 34 9999999
Q ss_pred cCCCCEEEEeeCC---------------------------CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEE
Q 040533 139 HWNGHILTSGSQD---------------------------KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASG 191 (364)
Q Consensus 139 ~~~~~~l~~~~~d---------------------------g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 191 (364)
| +++.|+.++.+ ..|.+||+.+++. ...+.. . .+..++|+|+| +++++
T Consensus 113 p-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg-~~~~~ 187 (347)
T 2gop_A 113 E-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK-IVVNV 187 (347)
T ss_dssp T-TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE-EEEEE
T ss_pred C-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe-EEEEE
Confidence 9 88888877632 5688999886653 133333 3 77889999999 77777
Q ss_pred eCCC-------eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC-----CCCeEEEEECCCCeEEEEE
Q 040533 192 GDDN-------LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT-----QDGCIKIWNVQKGTCIHSV 259 (364)
Q Consensus 192 ~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-----~d~~i~i~d~~~~~~~~~~ 259 (364)
..+. ...+|.+... + ...+..+ ..+..+ +|+|+.+++.+... ....|.+|| +++.....
T Consensus 188 ~~~~~~~~~~~~~~l~~~d~~---~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 188 PHREIIPQYFKFWDIYIWEDG---K-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp ECCCSSCCSSCCEEEEEEETT---E-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred ecccccccccccccEEEeCCC---c-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence 6542 3344443322 1 3333333 444444 99998777665310 135788888 55544333
Q ss_pred ec-CCCeEE-EEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcE-EE
Q 040533 260 DT-KAQICG-LEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETL-RF 336 (364)
Q Consensus 260 ~~-~~~v~~-~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i-~v 336 (364)
.. ...+.. +.|+ ++ .++++.. ++.+++| +.+++. ..+..+...|.+++|+| .++++++.++.. .+
T Consensus 259 ~~~~~~~~~~~~~s-dg-~~~~~~~------~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l 326 (347)
T 2gop_A 259 DEVDRGVGQAKIKD-GK-VYFTLFE------EGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLREL 326 (347)
T ss_dssp TTCCSEEEEEEEET-TE-EEEEEEE------TTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEE
T ss_pred ccCCcccCCccEEc-Cc-EEEEEec------CCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHh
Confidence 33 345775 8999 88 6666543 7899999 876554 34444577899999999 677787777765 78
Q ss_pred EEeeCCCCCcceeccCCc
Q 040533 337 WEAFGPSGSGDFVSHLDG 354 (364)
Q Consensus 337 w~~~~~~~~~~~~~~~~~ 354 (364)
|.+. ++ ...+..|...
T Consensus 327 ~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 327 FTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp EEES-SS-EEECCCTTST
T ss_pred eEeC-Cc-EEEeccccHh
Confidence 8776 33 4445555443
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.85 E-value=6.6e-20 Score=159.59 Aligned_cols=282 Identities=11% Similarity=0.025 Sum_probs=181.3
Q ss_pred EEEECCCCceeeeeeecCCC-----CCceEEEEcCCCCEEEEEecC---CcEEEEecCCcceeeeeecCCCcEEEEEeec
Q 040533 68 YLWKQENGEVQKLLKVTGED-----DFPTSISWSQDAKTLAVGYMA---SKLQLWDAETSKLIRNLEGHDKRVATASWNH 139 (364)
Q Consensus 68 ~iw~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 139 (364)
...|..+++....+. .+. ..+.+++|+|||++|+..... ..|.+||+.+++.......+......+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~--~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLT--PTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST 90 (396)
T ss_dssp EEECTTTCCEEEECS--CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT
T ss_pred eeecCCCCcceEEEe--cCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC
Confidence 344666765433322 332 237888999999998877543 3688899988876544333332233478999
Q ss_pred CCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEE-------------------EEEcCCCCEEEEE-----eCCC
Q 040533 140 WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCG-------------------LKWSNEGNLLASG-----GDDN 195 (364)
Q Consensus 140 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~d~ 195 (364)
+++.|+.++.++.|++||+.+++. ......+...... +.|+|+++.++.. ..+.
T Consensus 91 -dg~~l~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~ 168 (396)
T 3c5m_A 91 -DERAFFYVKNELNLMKVDLETLEE-QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC 168 (396)
T ss_dssp -TSSEEEEEETTTEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred -CCCEEEEEEcCCcEEEEECCCCCc-EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence 999999999999999999987653 3333323332222 3567777766654 3567
Q ss_pred eEEEEeCCCCCCCcceEEecccccceeEEEEcc-CCCcEEEeecCCCC----CeEEEEECCCCeEEEEEec--CCCeEEE
Q 040533 196 LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP-YQFNVLASGGGTQD----GCIKIWNVQKGTCIHSVDT--KAQICGL 268 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g~~d----~~i~i~d~~~~~~~~~~~~--~~~v~~~ 268 (364)
.|++||+..+. ...+..+...+..+.|+| ++..++.+..+ .. ..|.+||+..++....... ...+..+
T Consensus 169 ~l~~~d~~~g~----~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 169 RLIKVDIETGE----LEVIHQDTAWLGHPIYRPFDDSTVGFCHEG-PHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE 243 (396)
T ss_dssp EEEEEETTTCC----EEEEEEESSCEEEEEEETTEEEEEEEEECS-CSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred eEEEEECCCCc----EEeeccCCcccccceECCCCCCEEEEEecC-CCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence 89999987643 223334567788999999 67655554421 22 5799999876654333222 1247789
Q ss_pred EEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC-CCCEEEEEe----------------CC
Q 040533 269 EWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP-DGLTVVSAA----------------AD 331 (364)
Q Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~----------------~d 331 (364)
.|+|+|+.|+..... .+...+.|++||+.+++........ . .. +.|+| +|+++++++ .+
T Consensus 244 ~~spdg~~l~~~~~~-~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYF-KGQTDRVIYKANPETLENEEVMVMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp EECTTSSCEEEEEEE-TTTCCEEEEEECTTTCCEEEEEECC-S-EE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred EECCCCCEEEEEecC-CCCccceEEEEECCCCCeEEeeeCC-C-CC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 999999987765321 0111255999999887654332211 1 23 89999 999888765 34
Q ss_pred CcEEEEEeeCCCCCcceeccCC-----------ceeeeeeccC
Q 040533 332 ETLRFWEAFGPSGSGDFVSHLD-----------GLLSLKVSPI 363 (364)
Q Consensus 332 g~i~vw~~~~~~~~~~~~~~~~-----------~v~~~~~sp~ 363 (364)
+.|++||+.+++. ..+..+.. .+..++|+|.
T Consensus 320 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~d 361 (396)
T 3c5m_A 320 PFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPN 361 (396)
T ss_dssp CEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTT
T ss_pred CcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccC
Confidence 7899999887664 34554444 2566788874
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.84 E-value=1.4e-16 Score=143.50 Aligned_cols=289 Identities=8% Similarity=0.008 Sum_probs=203.0
Q ss_pred EEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecC--CcceeeeeecCCCcEEEEEee
Q 040533 61 IALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAE--TSKLIRNLEGHDKRVATASWN 138 (364)
Q Consensus 61 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~ 138 (364)
...++.|.++|..+++....+.. ...+..+.|+|||+++++++.++.|.+||+. +++.+..+... .....++|+
T Consensus 173 ~~~~~~V~viD~~t~~v~~~i~~---g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s 248 (567)
T 1qks_A 173 LRDAGQIALIDGSTYEIKTVLDT---GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETS 248 (567)
T ss_dssp ETTTTEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEEC
T ss_pred eCCCCeEEEEECCCCeEEEEEeC---CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEc
Confidence 33578999999999987655542 3357799999999999999999999999996 78888877753 456789999
Q ss_pred ----cCCCCEEEEee-CCCcEEEEEcccCcceeeeeec----------ccC-cEEEEEEcCCCCE-EEEEeCCCeEEEEe
Q 040533 139 ----HWNGHILTSGS-QDKSIINHDVRVSNNVTSRINA----------HTA-EVCGLKWSNEGNL-LASGGDDNLVHVWD 201 (364)
Q Consensus 139 ----~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~-l~~~~~d~~i~iwd 201 (364)
| ++++++++. .++.+.++|..+.+.+ ..+.. |.. .+..+..++++.. ++....+|.|.++|
T Consensus 249 ~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~-~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd 326 (567)
T 1qks_A 249 KMEGW-EDKYAIAGAYWPPQYVIMDGETLEPK-KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 326 (567)
T ss_dssp CSTTC-TTTEEEEEEEETTEEEEEETTTCCEE-EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred cccCC-CCCEEEEEEccCCeEEEEECCCCcEE-EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEe
Confidence 6 887777665 5589999998876643 33221 222 6788888887654 44455679999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCe---EEEE-EcCCccc
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQI---CGLE-WNRHHKE 276 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v---~~~~-~~~~~~~ 276 (364)
....... .+..+ ........+.|+|++++++++.. .++.|.++|+.+++.+..+.. .... ..+. ++|++..
T Consensus 327 ~~~~~~~-~v~~i-~~~~~~~d~~~~pdgr~~~va~~--~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~ 402 (567)
T 1qks_A 327 YTDLNNL-KTTEI-SAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGP 402 (567)
T ss_dssp TTCSSEE-EEEEE-ECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEE
T ss_pred cCCCccc-eeeee-eccccccCceECCCCCEEEEEeC--CCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCc
Confidence 8764321 12222 23345678899999998888775 688999999999998888765 3211 2333 5787444
Q ss_pred eeeeccCCccCCCCeEEEeeCCC-------CceeeeccccccceeEEeecCCCCEEEEEeC-------CCcEEEEEeeCC
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYPH-------MTKWGELQHQTSRILELSQSPDGLTVVSAAA-------DETLRFWEAFGP 342 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-------dg~i~vw~~~~~ 342 (364)
+.+... -.++.|.++|..+ .+.+.++......-..+..+|++++|.+... .+.|.++|+.+.
T Consensus 403 v~~t~~----~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 403 VWATSH----MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEEB----SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEeCC----CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 443221 1268999999987 6677777655443355788999999988663 359999999877
Q ss_pred -----CCC-ccee--------ccCCceeeeeeccC
Q 040533 343 -----SGS-GDFV--------SHLDGLLSLKVSPI 363 (364)
Q Consensus 343 -----~~~-~~~~--------~~~~~v~~~~~sp~ 363 (364)
... ..+. .....+..+.|+|.
T Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (567)
T 1qks_A 479 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKD 513 (567)
T ss_dssp CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTT
T ss_pred cccccCCCcEEeccccccccCCCCcceEeeeECCC
Confidence 221 2221 11346778888774
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.83 E-value=4.1e-18 Score=159.46 Aligned_cols=267 Identities=10% Similarity=0.059 Sum_probs=183.7
Q ss_pred eEEEEECCCCceeeeeee----cCCCCCceEEEEcCCCCEEEEEecCC-----cEEEEecCCcceeeeeecCCCcEEEEE
Q 040533 66 ELYLWKQENGEVQKLLKV----TGEDDFPTSISWSQDAKTLAVGYMAS-----KLQLWDAETSKLIRNLEGHDKRVATAS 136 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~v~~~~ 136 (364)
.+++.+..+++...++.. .+|...+..++|||||++||.+..++ .|++||+.+++.......+ ..+..++
T Consensus 99 ~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~ 177 (710)
T 2xdw_A 99 VLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMA 177 (710)
T ss_dssp EEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEE
T ss_pred EEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEE
Confidence 455555545543322211 13444688999999999999876543 8999999999876543322 2366799
Q ss_pred eecCCCCEEEEeeCCCc----------------EEEEEcccCcce---eeeeecccCcEEEEEEcCCCCEEEEEeC----
Q 040533 137 WNHWNGHILTSGSQDKS----------------IINHDVRVSNNV---TSRINAHTAEVCGLKWSNEGNLLASGGD---- 193 (364)
Q Consensus 137 ~~~~~~~~l~~~~~dg~----------------i~~~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~---- 193 (364)
|+| +++.|+.++.++. |++|++.++... +.....+...+..+.|+|||++|+.++.
T Consensus 178 wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 256 (710)
T 2xdw_A 178 WTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD 256 (710)
T ss_dssp ECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred EEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence 999 9999988887765 999999876531 1122224556789999999999888764
Q ss_pred -CCeEEEEeCCC------CCCCcceEEecccccceeEEEEccCCCcEEEeecC-CCCCeEEEEECCCCeE---EEEEecC
Q 040533 194 -DNLVHVWDHSK------MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG-TQDGCIKIWNVQKGTC---IHSVDTK 262 (364)
Q Consensus 194 -d~~i~iwd~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g-~~d~~i~i~d~~~~~~---~~~~~~~ 262 (364)
+..|++||+.. +. .....+..+...+.. .|+|++..+++.+.. ...+.|.+||+.++.. ...+.+.
T Consensus 257 ~~~~l~~~d~~~~~~~~~~~--~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 333 (710)
T 2xdw_A 257 PVNRLWYCDLQQESNGITGI--LKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH 333 (710)
T ss_dssp SCCEEEEEEGGGSSSSSCSS--CCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred CccEEEEEECcccccccCCc--cceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC
Confidence 56899999865 21 124445555555544 488888777776531 1245799999987642 2233333
Q ss_pred C--CeEEEEEcCCccceeeeccCCccCCCC--eEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEE-e---CCCcE
Q 040533 263 A--QICGLEWNRHHKEILSGHGFSSSGDGQ--KLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA-A---ADETL 334 (364)
Q Consensus 263 ~--~v~~~~~~~~~~~l~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~---~dg~i 334 (364)
. .+..+.|++++.++++... ++ .|++|++.+++.+..+..+.+.+..+.++|++..++.. + ..+.|
T Consensus 334 ~~~~~~~~~~~~~~~lv~~~~~------~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i 407 (710)
T 2xdw_A 334 EKDVLEWVACVRSNFLVLCYLH------DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGII 407 (710)
T ss_dssp SSCEEEEEEEETTTEEEEEEEE------TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEE
T ss_pred CCCeEEEEEEEcCCEEEEEEEE------CCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEE
Confidence 3 5788999977777766643 55 57778887788777787777888999999999766533 2 35789
Q ss_pred EEEEeeCCC
Q 040533 335 RFWEAFGPS 343 (364)
Q Consensus 335 ~vw~~~~~~ 343 (364)
+.||+.+++
T Consensus 408 ~~~d~~tg~ 416 (710)
T 2xdw_A 408 YHCDLTKEE 416 (710)
T ss_dssp EEEETTSSS
T ss_pred EEEECCCCc
Confidence 999998766
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.83 E-value=2.1e-17 Score=139.95 Aligned_cols=276 Identities=10% Similarity=-0.014 Sum_probs=189.6
Q ss_pred CCeEEEEECCCCceeeeeee----cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeec
Q 040533 64 GLELYLWKQENGEVQKLLKV----TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNH 139 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 139 (364)
++.|.++|.++++....... ......+..+.+. +++..++...++.|.+||..+++.+.++. .......+++++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence 67999999999886543311 0122446778875 34455555567899999999999988886 456788999988
Q ss_pred CCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc-----CcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCCCCcceE
Q 040533 140 WNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT-----AEVCGLKWSNEGNLLASGG--DDNLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 140 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~ 212 (364)
++.++++...++.|.+||+.+.+. ...+.... .....+++ . +..++++. .++.|.++|..+.. .+.
T Consensus 94 -~g~lyv~~~~~~~v~~iD~~t~~~-~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~---~~~ 166 (328)
T 3dsm_A 94 -DEKAYVTQIWDYRIFIINPKTYEI-TGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDK---VVD 166 (328)
T ss_dssp -TTEEEEEEBSCSEEEEEETTTTEE-EEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTE---EEE
T ss_pred -CCeEEEEECCCCeEEEEECCCCeE-EEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCe---EEE
Confidence 775555554889999999987653 33333222 14456777 3 44555554 48899999987643 344
Q ss_pred EecccccceeEEEEccCCCcEEEeecCCC--------CCeEEEEECCCCeEEEEEec--CCCeEEEEEcCCccceeeecc
Q 040533 213 RFRDHRAAVKALAWCPYQFNVLASGGGTQ--------DGCIKIWNVQKGTCIHSVDT--KAQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 213 ~~~~~~~~v~~~~~~~~~~~~~~~~~g~~--------d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~ 282 (364)
.+.. ......++++|+++ ++++..+.. .+.|.++|..+++....+.. ......++++|+++.++++
T Consensus 167 ~i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~-- 242 (328)
T 3dsm_A 167 ELTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI-- 242 (328)
T ss_dssp EEEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE--
T ss_pred EEEc-CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE--
Confidence 4433 23457889999985 555443110 27899999999998877765 3468999999999999887
Q ss_pred CCccCCCCeEEEeeCCCCceeee--ccccccceeEEeecC-CCCEEEEE----eCCCcEEEEEeeCCCCCcceeccCCce
Q 040533 283 FSSSGDGQKLCLWKYPHMTKWGE--LQHQTSRILELSQSP-DGLTVVSA----AADETLRFWEAFGPSGSGDFVSHLDGL 355 (364)
Q Consensus 283 ~~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~-~~~~l~~~----~~dg~i~vw~~~~~~~~~~~~~~~~~v 355 (364)
++.|.+||..+++.... +.........++++| ++.++++. ..++.|.+||.. ++.+..+.. ....
T Consensus 243 ------~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P 314 (328)
T 3dsm_A 243 ------NNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIP 314 (328)
T ss_dssp ------SSSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESE
T ss_pred ------ccEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCc
Confidence 44899999988776422 222245678999999 55555555 578999999987 777776653 2333
Q ss_pred eeeee
Q 040533 356 LSLKV 360 (364)
Q Consensus 356 ~~~~~ 360 (364)
..++|
T Consensus 315 ~~~~~ 319 (328)
T 3dsm_A 315 GAFCW 319 (328)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 44444
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.82 E-value=1.8e-17 Score=141.64 Aligned_cols=246 Identities=9% Similarity=0.142 Sum_probs=165.8
Q ss_pred CCceEEEEcCCCCEEEEEe---------cCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC---C--c
Q 040533 88 DFPTSISWSQDAKTLAVGY---------MASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD---K--S 153 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g--~ 153 (364)
..+..+++ ||++++... .++.|.+||+.+++... + ..+..++|+| +++.|+..+.+ + .
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISP-DGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECT-TSSEEEEEEEETTTTEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECC-CCCEEEEEEeccCCCcce
Confidence 34667777 888887652 25679999998876533 3 4678899999 99988877654 3 3
Q ss_pred EEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC---------------------------CeEEEEeCCCCC
Q 040533 154 IINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD---------------------------NLVHVWDHSKMS 206 (364)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------~~i~iwd~~~~~ 206 (364)
|.+||+.+++. .... .+.. +..++|+|+|+.|+.++.+ ..|++||+..+.
T Consensus 87 l~~~~~~~g~~-~~l~-~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 163 (347)
T 2gop_A 87 IWVADLETLSS-KKIL-EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE 163 (347)
T ss_dssp EEEEETTTTEE-EEEE-EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred EEEEECCCCce-EEEE-cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence 77778776542 2222 3334 9999999999988887632 578999987543
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCC-------CCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceee
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ-------DGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILS 279 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~-------d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 279 (364)
.+..+.. . .+..+.|+|++ +++++.... ...|.++| +++....... ..+..+ +|+|+.++.
T Consensus 164 ---~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~ 231 (347)
T 2gop_A 164 ---VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILL 231 (347)
T ss_dssp ---EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEE
T ss_pred ---EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEE
Confidence 2233433 3 78899999998 555443111 22455566 5554433333 444443 999998876
Q ss_pred eccCCc--cCCCCeEEEeeCCCCceeeeccccccceeE-EeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCcee
Q 040533 280 GHGFSS--SGDGQKLCLWKYPHMTKWGELQHQTSRILE-LSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLL 356 (364)
Q Consensus 280 ~~~~~~--~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~-i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~ 356 (364)
...... ......|.+|| +++.......+...+.. +.|+ ++ ++++++.++.+++| +.+++ ...+..+...|.
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~-~~~~~~~~~~v~ 305 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE-IKPIAKGRHWIM 305 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS-EEEEECSSSEEE
T ss_pred EEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc-eEEEecCCCeEE
Confidence 642110 01235788888 56555555566777886 9999 88 89999999999999 88543 344445577899
Q ss_pred eeeecc
Q 040533 357 SLKVSP 362 (364)
Q Consensus 357 ~~~~sp 362 (364)
+++|+|
T Consensus 306 ~~~~s~ 311 (347)
T 2gop_A 306 GFDVDE 311 (347)
T ss_dssp EEEESS
T ss_pred eeeeeC
Confidence 999987
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.82 E-value=3.9e-17 Score=136.39 Aligned_cols=236 Identities=12% Similarity=0.095 Sum_probs=171.3
Q ss_pred CCCCCceEEEEcCCCC-EEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 85 GEDDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
.+.....+++|+|+++ +++++..++.|..|+..++ ...+..+...+.+++++| +++++++...++.|.+||..+++
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGE 101 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCC
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCc
Confidence 4455678999999998 7788888999999999877 566666778899999999 89988877777899999987665
Q ss_pred ceeeeeecc----cCcEEEEEEcCCCCEEEE----Ee-------------CCCeEEEEeCCCCCCCcceEEeccccccee
Q 040533 164 NVTSRINAH----TAEVCGLKWSNEGNLLAS----GG-------------DDNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222 (364)
Q Consensus 164 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 222 (364)
. ....... ...+..++++|+|+++++ ++ ..+.|..++.. . + ...+..+.....
T Consensus 102 ~-~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g---~-~~~~~~~~~~~~ 175 (296)
T 3e5z_A 102 W-ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G---T-LSAPIRDRVKPN 175 (296)
T ss_dssp E-EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S---C-EEEEECCCSSEE
T ss_pred E-EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C---C-EEEeecCCCCCc
Confidence 3 2222111 234567999999998887 32 13456666643 1 1 334444556678
Q ss_pred EEEEccCCCcEEEeecCCCCCeEEEEECC-CCeE---EEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 223 ALAWCPYQFNVLASGGGTQDGCIKIWNVQ-KGTC---IHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~---~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
.++|+|+++.+ ++.. .++.|.+|++. +++. ...+. ....+..++++++|++.++. ++.|.+|+.
T Consensus 176 gi~~s~dg~~l-v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--------~~~v~~~~~ 244 (296)
T 3e5z_A 176 GLAFLPSGNLL-VSDT--GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--------GDGVHVLTP 244 (296)
T ss_dssp EEEECTTSCEE-EEET--TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--------TTEEEEECT
T ss_pred cEEECCCCCEE-EEeC--CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--------CCeEEEECC
Confidence 99999999766 6654 68899999987 5554 23331 22446789999999876654 688999998
Q ss_pred CCCceeeeccccccceeEEee-cCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 298 PHMTKWGELQHQTSRILELSQ-SPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~i~~-~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
. ++.+..+..+.. +++++| +|+++.|++++.++ +.-++..+.+
T Consensus 245 ~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 245 D-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp T-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred C-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence 6 777777877777 899999 58999898888763 4444444433
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.81 E-value=9.1e-18 Score=142.67 Aligned_cols=261 Identities=8% Similarity=0.020 Sum_probs=183.0
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT 166 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 166 (364)
...|.+++|++++..++....++.++.| .++....+..+...+.+++|+| ++++++++..++.|.+||..+++. .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~-~ 79 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEI-K 79 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE-E
T ss_pred ccccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcE-E
Confidence 3457788899988777776778889999 3555666777777889999999 888888888899999999886653 3
Q ss_pred eeeecccCcEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCCCCcceEEec--ccccceeEEEEccCCCcEEEeecC-
Q 040533 167 SRINAHTAEVCGLKWSNEGNLLASGGDD----NLVHVWDHSKMSSSKCLHRFR--DHRAAVKALAWCPYQFNVLASGGG- 239 (364)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~g- 239 (364)
.....+...+.+++++++++++++...+ +.|.+||...... ...+. .....+..++++|++. ++++...
T Consensus 80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~ 155 (333)
T 2dg1_A 80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL---QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRG 155 (333)
T ss_dssp EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC---EEEECSSSSCCCEEEEEECTTSC-EEEEECCC
T ss_pred EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE---EEEEccCccCCcccceEECCCCC-EEEEeccc
Confidence 3333456789999999999888777666 6899999765432 11121 2345688999999985 5554320
Q ss_pred ---CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC-Cceeee--------cc
Q 040533 240 ---TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH-MTKWGE--------LQ 307 (364)
Q Consensus 240 ---~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~-~~~~~~--------~~ 307 (364)
...+.|..+|..+++..........+..++|+|+++.++.+. ..++.|.+|+..+ +..+.. +.
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~-----~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~ 230 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE-----TTANRLHRIALEDDGVTIQPFGATIPYYFT 230 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE-----GGGTEEEEEEECTTSSSEEEEEEEEEEECC
T ss_pred cccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEe-----CCCCeEEEEEecCCCcCcccccceEEEecC
Confidence 013567777776655544333345678999999998665542 1268999999864 333221 12
Q ss_pred ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCC------ceeeeeeccC
Q 040533 308 HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLD------GLLSLKVSPI 363 (364)
Q Consensus 308 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~------~v~~~~~sp~ 363 (364)
++ ..+..++++++|+++++...++.|.+||. .++....+..+.. .+.+++|+|.
T Consensus 231 ~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 231 GH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp SS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred CC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 22 46788999999998888888899999997 4454455543332 5889999874
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.81 E-value=3.9e-17 Score=134.41 Aligned_cols=242 Identities=8% Similarity=-0.023 Sum_probs=168.4
Q ss_pred CceEEEEcCCCCEEE-EEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee
Q 040533 89 FPTSISWSQDAKTLA-VGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 167 (364)
.+.+++++++|++++ +...++.|.+|+..++........+...+.++++++ +++++++.. ++.|.+||...... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~-~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ-TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC-EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE-ee
Confidence 678999999998766 446788999999766543322223335678899999 788666655 88999999875442 22
Q ss_pred eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEE
Q 040533 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI 247 (364)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 247 (364)
........+..++++++++++++...++.|.+|+...... ..........+..+++++++. ++++.. .++.|.+
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~ 175 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ---TVLPFTGLNDPDGVAVDNSGN-VYVTDT--DNNRVVK 175 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC---EECCCCSCCSCCCEEECTTCC-EEEEEG--GGTEEEE
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee---EeeccccCCCceeEEEeCCCC-EEEEEC--CCCEEEE
Confidence 1112335689999999998777777788999997543221 111122234578899999885 666554 5789999
Q ss_pred EECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEE
Q 040533 248 WNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 248 ~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
||............. ..+..++++++|...++... ++.|.+|+............+...+.+++++++|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~------~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 176 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN------TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT------TSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEE
T ss_pred EecCCCceEeecccCCCCceEEEECCCCCEEEEECC------CCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEE
Confidence 998876654332222 56889999999966665532 78899999876544433323345689999999999888
Q ss_pred EEeCCCcEEEEEeeCCCCC
Q 040533 327 SAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~~ 345 (364)
+...++.|+++++...+..
T Consensus 250 ~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp EEGGGTEEEEECCCGGGSC
T ss_pred EECCCCEEEEEcCCCcccc
Confidence 8889999999998776543
No 184
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.80 E-value=8.5e-17 Score=132.31 Aligned_cols=233 Identities=10% Similarity=0.007 Sum_probs=173.7
Q ss_pred CCCEEEEEecCCcEEEEecCCcceeeeeecCC-CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc-cCc
Q 040533 98 DAKTLAVGYMASKLQLWDAETSKLIRNLEGHD-KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH-TAE 175 (364)
Q Consensus 98 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~ 175 (364)
.+++|++++.++.|.+||.++|+.+.++..+. ..+.++.++| ++++++ +.++.|..||. +++. +..+..+ ...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~-~W~~~~~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRE-LWNIAAPAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCE-EEEEECCTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCE-EEEEcCCCCcc
Confidence 45789999999999999999999999998765 4788999999 999888 34678999998 5654 4445443 357
Q ss_pred EEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCCCcceEEec------ccccceeEEEEccCCCcEEEeecCCCCCeEEEE
Q 040533 176 VCGLKWSNEGNLLASGGD-DNLVHVWDHSKMSSSKCLHRFR------DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIW 248 (364)
Q Consensus 176 v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~ 248 (364)
+.++.+.++|+++++.+. ++.+..+|.. ++.+..+. .+......+++.+++. ++++.. .++.|..|
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~----Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~--~~~~v~~~ 151 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNMK----GEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLF--ATSEVREI 151 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECTT----SCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEET--TTTEEEEE
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeCC----CCEEEEEeccCCCCcccccccCceECCCCC-EEEEec--CCCEEEEE
Confidence 889999999999999887 7778777742 23344432 1223455677888885 555544 68999999
Q ss_pred ECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc------cceeEEeecCCC
Q 040533 249 NVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT------SRILELSQSPDG 322 (364)
Q Consensus 249 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~------~~i~~i~~~~~~ 322 (364)
|.. |+.+.++.......++...++|..++++.. ++.|..+|..+++.+.++..+. ..+..+...++|
T Consensus 152 d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~------~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G 224 (276)
T 3no2_A 152 APN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGD------AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNG 224 (276)
T ss_dssp CTT-SCEEEEEECSSCCCEEEECTTSCEEEECBT------TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTS
T ss_pred CCC-CCEEEEEECCCCccceeEcCCCCEEEEeCC------CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCC
Confidence 998 999999987777778888999998887643 6789999999999988876432 237888899999
Q ss_pred CEEEEEeCC--------CcEEEEEee-CCCCCccee
Q 040533 323 LTVVSAAAD--------ETLRFWEAF-GPSGSGDFV 349 (364)
Q Consensus 323 ~~l~~~~~d--------g~i~vw~~~-~~~~~~~~~ 349 (364)
.++++.... +..+++++. +++.+..+.
T Consensus 225 ~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 225 GLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp CEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred CEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence 988877421 234566663 444444443
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.80 E-value=1e-17 Score=156.32 Aligned_cols=263 Identities=12% Similarity=-0.027 Sum_probs=175.3
Q ss_pred eEEEEECCCCceeeeeee----cCCCCCceEEEEcCCCCEEEEEe-----cCCcEEEEecCCccee-eeeecCCCcEEEE
Q 040533 66 ELYLWKQENGEVQKLLKV----TGEDDFPTSISWSQDAKTLAVGY-----MASKLQLWDAETSKLI-RNLEGHDKRVATA 135 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~iw~~~~~~~~-~~~~~~~~~v~~~ 135 (364)
.|++.+..+++...+... .+|...+..++|||||++||.+. .+..|++||+.+++.+ .... .......+
T Consensus 95 ~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~ 173 (695)
T 2bkl_A 95 ILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATP 173 (695)
T ss_dssp EEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCC
T ss_pred EEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-Ccccccce
Confidence 456666555554444322 24555789999999999998543 3468999999998865 2111 11112678
Q ss_pred EeecCCCCEEEEeeCCCc-------------EEEEEcccCcc---eeeeeecccCcEEEEEEcCCCCEEEEEeCCC----
Q 040533 136 SWNHWNGHILTSGSQDKS-------------IINHDVRVSNN---VTSRINAHTAEVCGLKWSNEGNLLASGGDDN---- 195 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~-------------i~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---- 195 (364)
+|+| +++.|+.++.+.. |++|++.++.. ++.....+...+..+.|+|||++|+.++.++
T Consensus 174 ~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 252 (695)
T 2bkl_A 174 KWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEN 252 (695)
T ss_dssp EECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEE
T ss_pred EEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCce
Confidence 9999 9999999888766 99999987652 2223334556788999999999988877665
Q ss_pred eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec-CCCCCeEEEEECCCCeE---EEEEec--CCCeEEEE
Q 040533 196 LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG-GTQDGCIKIWNVQKGTC---IHSVDT--KAQICGLE 269 (364)
Q Consensus 196 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~~---~~~~~~--~~~v~~~~ 269 (364)
.|++||.... ....+..+...+....+ +++. +++... +..++.|.+||+.++.. ...+.. ...+..++
T Consensus 253 ~l~~~~~~~~----~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~ 326 (695)
T 2bkl_A 253 DVYWKRPGEK----DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVS 326 (695)
T ss_dssp EEEEECTTCS----SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEE
T ss_pred EEEEEcCCCC----ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEE
Confidence 6777764332 23444445555666666 6666 555542 11358999999987653 333333 23478888
Q ss_pred EcCCccceeeeccCCccCCCCeEEEeeCC-CCceeeecccc-ccceeEEeecCCCCEEEEE----eCCCcEEEEEeeCCC
Q 040533 270 WNRHHKEILSGHGFSSSGDGQKLCLWKYP-HMTKWGELQHQ-TSRILELSQSPDGLTVVSA----AADETLRFWEAFGPS 343 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~----~~dg~i~vw~~~~~~ 343 (364)
++ ++..+++... ++..++|.+. +++....+..+ .+.+..+.++|+++.++.. ...++|++||+.+++
T Consensus 327 ~~-~~~lv~~~~~------dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 327 IV-GGHLSLEYLK------DATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EE-TTEEEEEEEE------TTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EE-CCEEEEEEEE------CCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88 5666665533 7777776554 45556666554 5678889999999877633 335789999988765
No 186
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=2.6e-16 Score=130.68 Aligned_cols=234 Identities=12% Similarity=0.247 Sum_probs=164.6
Q ss_pred eecccCCCcc-EEEE-EeCCeEEEEECCCCceeeeeee----cCCCCCceEEEE-cCCCCEEEEEec-CCcEEEEecCCc
Q 040533 48 SNMMDWGRNN-ILAI-ALGLELYLWKQENGEVQKLLKV----TGEDDFPTSISW-SQDAKTLAVGYM-ASKLQLWDAETS 119 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~-~~~~~i~iw~~~~~~~~~~~~~----~~~~~~v~~~~~-s~~~~~l~~~~~-dg~i~iw~~~~~ 119 (364)
...+++++++ ++++ ..++.|.+||.. ++....+.. .++...+..+++ .++++++++... ++.|.+|| .++
T Consensus 32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g 109 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYG 109 (286)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTS
T ss_pred CceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCC
Confidence 4556666654 4444 457899999987 443332221 134457899999 567776666643 78999999 567
Q ss_pred ceeeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee--cccCcEEEEEEcCCCCEEEEEeCCCe
Q 040533 120 KLIRNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN--AHTAEVCGLKWSNEGNLLASGGDDNL 196 (364)
Q Consensus 120 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~ 196 (364)
+.+..+.. +...+..++++| +++++++...++.|.+||.. ++ ....+. .+...+..++++++++++++...++.
T Consensus 110 ~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 110 QFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GN-VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp CEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SC-EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred cEEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CC-EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE
Confidence 76666643 345789999999 88888888888999999965 33 233332 34456899999999988887778899
Q ss_pred EEEEeCCCCCCCcceEEeccc--ccceeEEEEccCCCcEEEeecCCCCC-eEEEEECCCCeEEEEEecC---CCeEEEEE
Q 040533 197 VHVWDHSKMSSSKCLHRFRDH--RAAVKALAWCPYQFNVLASGGGTQDG-CIKIWNVQKGTCIHSVDTK---AQICGLEW 270 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~g~~d~-~i~i~d~~~~~~~~~~~~~---~~v~~~~~ 270 (364)
|++||... +.+..+..+ ...+..+++++++ .++++.. .++ .|.+||. +++.+..+..+ ..+.++++
T Consensus 187 i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~--~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 187 VKVFNYEG----QYLRQIGGEGITNYPIGVGINSNG-EILIADN--HNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp EEEEETTC----CEEEEESCTTTSCSEEEEEECTTC-CEEEEEC--SSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred EEEEcCCC----CEEEEEccCCccCCCcEEEECCCC-CEEEEeC--CCCEEEEEECC-CCCEEEEEcccCCCCcceeEEE
Confidence 99999642 234444332 3568899999998 5666554 455 9999995 56666666543 23779999
Q ss_pred cCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 271 NRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 271 ~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
+|+|+++++. . ++.|++|++....
T Consensus 259 ~~~g~l~vs~-~------~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 259 MDDGSVVLAS-K------DYRLYIYRYVQLA 282 (286)
T ss_dssp ETTTEEEEEE-T------TTEEEEEECSCCC
T ss_pred CCCCcEEEEC-C------CCeEEEEEccccc
Confidence 9999876663 2 8999999986543
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.78 E-value=1.6e-14 Score=120.53 Aligned_cols=271 Identities=7% Similarity=-0.015 Sum_probs=185.7
Q ss_pred eecccCCCcc-EEEEEe-CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 48 SNMMDWGRNN-ILAIAL-GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
...++.++++ ++.+.. ++.|.+||.. ++... .....+...+.+++++++|.++++...++.|..|+.. ++. ..+
T Consensus 17 ~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~ 92 (299)
T 2z2n_A 17 PYGITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEY 92 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE
T ss_pred ccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEE
Confidence 5566666654 555544 6899999988 55432 2223345779999999999988777668889999976 432 222
Q ss_pred e--cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 126 E--GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 126 ~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
. .....+..+++.| ++.++++...++.|..||. ++.............+..+++.+++++.++...++.|..||.
T Consensus 93 ~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~- 169 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE- 169 (299)
T ss_dssp ECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-
T ss_pred eCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-
Confidence 2 2455789999998 8888888777889999998 444222222234467899999999988777767789999997
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec---CCCeEEEEEcCCccceeee
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT---KAQICGLEWNRHHKEILSG 280 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~ 280 (364)
+... . ..........+..+++++++. ++++.. .++.|..||. +++... +.. ...+.+++++++|...++.
T Consensus 170 ~g~~-~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 170 SGDI-T-EFKIPTPASGPVGITKGNDDA-LWFVEI--IGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp TCCE-E-EEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEE
T ss_pred CCcE-E-EeeCCCCCCcceeEEECCCCC-EEEEcc--CCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEec
Confidence 3221 1 111223345678999999885 555543 4789999999 666433 322 2568999999999866654
Q ss_pred ccCCccCCCCeEEEeeCCCCceeee--ccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGE--LQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
.. ++.|..||. +++ +.. +..+...+.++++ ++|.+.++.+ .+.|..++..+.
T Consensus 243 ~~------~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 243 WG------ANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TT------TTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred cC------CceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 22 789999998 443 233 2344567899999 8888776655 567777777654
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.78 E-value=2.5e-15 Score=135.37 Aligned_cols=290 Identities=12% Similarity=0.053 Sum_probs=200.4
Q ss_pred ecccCCCcc--EEEEEeCCeEEEEECC--CCceeeeeeecCCCCCceEEEEc----CCCCEEEEEec-CCcEEEEecCCc
Q 040533 49 NMMDWGRNN--ILAIALGLELYLWKQE--NGEVQKLLKVTGEDDFPTSISWS----QDAKTLAVGYM-ASKLQLWDAETS 119 (364)
Q Consensus 49 ~~~~~~~~~--~~~~~~~~~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~-dg~i~iw~~~~~ 119 (364)
..+.++|++ +++++.++.|.+||+. +++...... . ......++|+ |||++++++.+ ++.|.|+|..+.
T Consensus 200 ~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~--~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 200 HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK--I-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE--C-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred cceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe--c-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 456777753 5666778899999995 665543332 2 3346899999 69998888764 589999999999
Q ss_pred ceeeeeecC-----------CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEE
Q 040533 120 KLIRNLEGH-----------DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188 (364)
Q Consensus 120 ~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (364)
+.+..+... ...+..+..++....+++....+|.|.++|......+.............+.|+|+++++
T Consensus 277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~ 356 (567)
T 1qks_A 277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 356 (567)
T ss_dssp CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE
Confidence 888776531 226788888884455666667789999999876543222222334456788999999988
Q ss_pred EEEe-CCCeEEEEeCCCCCCCcceEEecc-----cccceeEEE-EccCCCcEEEeecCCCCCeEEEEECCC-------Ce
Q 040533 189 ASGG-DDNLVHVWDHSKMSSSKCLHRFRD-----HRAAVKALA-WCPYQFNVLASGGGTQDGCIKIWNVQK-------GT 254 (364)
Q Consensus 189 ~~~~-~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~-~~~~~~~~~~~~~g~~d~~i~i~d~~~-------~~ 254 (364)
+++. .++.|.++|+.+.+. +..+.. |.+ ..+. ++|++..+++++. -.++.|.++|..+ .+
T Consensus 357 ~va~~~sn~V~ViD~~t~kl---~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~-~g~~~Vsvid~~~~~~~~~~~k 430 (567)
T 1qks_A 357 ITAANARNKLVVIDTKEGKL---VAIEDTGGQTPHPG--RGANFVHPTFGPVWATSH-MGDDSVALIGTDPEGHPDNAWK 430 (567)
T ss_dssp EEEEGGGTEEEEEETTTTEE---EEEEECSSSSBCCT--TCEEEEETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTS
T ss_pred EEEeCCCCeEEEEECCCCcE---EEEEeccCcCCCCc--cceeeECCCCCcEEEeCC-CCCCeEEEecCCCCCCccccCE
Confidence 7765 578999999886532 333321 322 2223 5787656766652 1368999999988 67
Q ss_pred EEEEEecCCC-eEEEEEcCCccceeeeccCCccCC---CCeEEEeeCCCC-----cee-eecc--------ccccceeEE
Q 040533 255 CIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSGD---GQKLCLWKYPHM-----TKW-GELQ--------HQTSRILEL 316 (364)
Q Consensus 255 ~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~~~~~~---~~~i~i~d~~~~-----~~~-~~~~--------~~~~~i~~i 316 (364)
.++++...+. -..+..+|+++++.+..... .+ .+.|.++|+.+. ... ..+. .....+..+
T Consensus 431 vv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~--~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (567)
T 1qks_A 431 ILDSFPALGGGSLFIKTHPNSQYLYVDATLN--PEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQG 508 (567)
T ss_dssp EEEEEECSCSCCCCEECCTTCSEEEEECTTC--SSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEE
T ss_pred EEEEEecCCCCCEEEEeCCCCCeEEEecCCC--CCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEee
Confidence 8888876533 35578999999998864210 11 359999999876 211 2221 123578899
Q ss_pred eecCCCCEEEEEe-----CCCcEEEEEeeCCCCCccee
Q 040533 317 SQSPDGLTVVSAA-----ADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 317 ~~~~~~~~l~~~~-----~dg~i~vw~~~~~~~~~~~~ 349 (364)
.|+|+|+.+..+. .++.|.|+|.++.+....+.
T Consensus 509 ~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 509 EFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp EECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred eECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 9999999877653 37999999999887766665
No 189
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=2.9e-16 Score=133.02 Aligned_cols=220 Identities=10% Similarity=0.113 Sum_probs=158.5
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc-eeeee---------ecCCCcEEEE
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-LIRNL---------EGHDKRVATA 135 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~---------~~~~~~v~~~ 135 (364)
.|.+||..+++...... .++-..+..++++|+|+++++...++.|++|+..... .+..+ ..+......+
T Consensus 70 ~i~~~d~~~g~~~~~~~-~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i 148 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSG-KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV 148 (329)
T ss_dssp CEEEECTTTCCEEEEEC-TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred cEEEEECCCCeEEeccC-CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence 69999999888754332 2445678999999999988888888999999976442 44444 2344568999
Q ss_pred EeecCCCCEEEEee-CCCcEEEEEcccCcceeeeeec----------ccCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCC
Q 040533 136 SWNHWNGHILTSGS-QDKSIINHDVRVSNNVTSRINA----------HTAEVCGLKWSNE-GNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 136 ~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~ 203 (364)
+++|.++.++++.+ .++.|++|+.. +. ....+.. +-.....++++|+ +.++++...++.|++||..
T Consensus 149 a~~~~~g~lyv~d~~~~~~I~~~~~~-g~-~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 149 AVEPSTGAVFVSDGYCNSRIVQFSPS-GK-FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EECTTTCCEEEEECSSCCEEEEECTT-SC-EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCeEEEEeCCCCCeEEEEcCC-CC-EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 99985677777776 68999999943 43 2333321 2234889999998 7777777788999999976
Q ss_pred CCCCCcceEEec--ccccceeEEEEccCCCcEEEeec-----CCCCCeEEEEECCCCeEEEEEe----cCCCeEEEEEcC
Q 040533 204 KMSSSKCLHRFR--DHRAAVKALAWCPYQFNVLASGG-----GTQDGCIKIWNVQKGTCIHSVD----TKAQICGLEWNR 272 (364)
Q Consensus 204 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~-----g~~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~~~ 272 (364)
++ +.+..+. .+...+..++|+| + .++.+.+ ...+..|++||..+++.+..+. .......++++|
T Consensus 227 ~G---~~~~~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~ 301 (329)
T 3fvz_A 227 TK---EFVREIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE 301 (329)
T ss_dssp TC---CEEEEECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT
T ss_pred CC---cEEEEEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC
Confidence 43 3355542 3456788999999 3 3333322 1235689999999999998874 235589999999
Q ss_pred CccceeeeccCCccCCCCeEEEeeCCC
Q 040533 273 HHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 273 ~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
+|..+++... ++.|++|++..
T Consensus 302 dG~lyvad~~------~~~I~~~~~~~ 322 (329)
T 3fvz_A 302 DGTVYIGDAH------TNTVWKFTLTE 322 (329)
T ss_dssp TSEEEEEESS------SCCEEEEEEEE
T ss_pred CCCEEEEECC------CCEEEEEeCCc
Confidence 9966665533 88999999753
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.77 E-value=1.4e-15 Score=142.24 Aligned_cols=244 Identities=10% Similarity=0.059 Sum_probs=168.8
Q ss_pred eeecccCCCcc-EEEEEe--CC----eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCc---------
Q 040533 47 YSNMMDWGRNN-ILAIAL--GL----ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASK--------- 110 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~--~~----~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--------- 110 (364)
.+..++|||++ .++.+. +| .|++||+.+++..... +.. ..+..++|+|||+.|+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-ccC--cccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 46788999974 454432 23 8999999999876532 212 23678999999999999887765
Q ss_pred -------EEEEecCCccee--eeee--cCCCcEEEEEeecCCCCEEEEeeC-----CCcEEEEEccc------Ccceeee
Q 040533 111 -------LQLWDAETSKLI--RNLE--GHDKRVATASWNHWNGHILTSGSQ-----DKSIINHDVRV------SNNVTSR 168 (364)
Q Consensus 111 -------i~iw~~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~------~~~~~~~ 168 (364)
|++|++.+++.. ..+. .+...+..+.|+| ++++|+.++. +..|.+||+.+ +......
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 999999887532 2222 2455688999999 8988887764 56899999986 4322444
Q ss_pred eecccCcEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCCCCcceEEeccccc--ceeEEEEccCCCcEEEeecCCCC
Q 040533 169 INAHTAEVCGLKWSNEGNLLASGGDD----NLVHVWDHSKMSSSKCLHRFRDHRA--AVKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 169 ~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~g~~d 242 (364)
+..+...+.. .|+|+|..|+..+.. +.|.+||+..... .....+..+.. .+..++|++++ .++++.. .+
T Consensus 282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~--~~ 356 (710)
T 2xdw_A 282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-SKWKVLVPEHEKDVLEWVACVRSN-FLVLCYL--HD 356 (710)
T ss_dssp EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCEEEEEEEETTT-EEEEEEE--ET
T ss_pred eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-ccceeccCCCCCCeEEEEEEEcCC-EEEEEEE--EC
Confidence 5555555554 488888887776653 3699999876531 11234444433 67888998654 6777665 56
Q ss_pred C--eEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 243 G--CIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 243 ~--~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
+ .|.+||+.+++.+..+..+ ..+..+.++|++..++.... +....+.++.||+.+++
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~s--s~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFT--SFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEE--CSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEe--CCCCCCEEEEEECCCCc
Confidence 6 4677888778777777654 55788999999877664422 22446899999998876
No 191
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.76 E-value=1.7e-14 Score=120.27 Aligned_cols=259 Identities=9% Similarity=0.022 Sum_probs=178.9
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee-eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc
Q 040533 83 VTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN-LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV 161 (364)
Q Consensus 83 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 161 (364)
+..+...+.++++.++|+++++...++.|.+||.. ++.... ...+...+..+++.+ ++.++++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCC-
Confidence 33455679999999999977776667899999988 554322 223456789999998 88888887778889999976
Q ss_pred CcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC
Q 040533 162 SNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241 (364)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 241 (364)
+.............+..+++.++++++++...++.|..||. .... ...........+..+++++++ .++++.. .
T Consensus 87 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~--~~~~~~~~~~~~~~i~~~~~g-~l~v~~~--~ 160 (299)
T 2z2n_A 87 GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI--REYELPNKGSYPSFITLGSDN-ALWFTEN--Q 160 (299)
T ss_dssp SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE--EEEECSSTTCCEEEEEECTTS-CEEEEET--T
T ss_pred CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE--EEecCCCCCCCCceEEEcCCC-CEEEEeC--C
Confidence 33111112224457899999999988887777889999997 3221 111222234568899999998 5665543 5
Q ss_pred CCeEEEEECCCCeEEEE-Ee-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeee-ccccccceeEEee
Q 040533 242 DGCIKIWNVQKGTCIHS-VD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE-LQHQTSRILELSQ 318 (364)
Q Consensus 242 d~~i~i~d~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~ 318 (364)
++.|..||. +++.... .. ....+..++++++|...++... ++.|.+||. +++.... ...+...+.++++
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 232 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII------GNKIGRITT-SGEITEFKIPTPNARPHAITA 232 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC------CceEEEECC-CCcEEEEECCCCCCCceeEEE
Confidence 789999999 6665443 12 2345889999999887665532 788999998 6554322 3334567899999
Q ss_pred cCCCCEEEEEeCCCcEEEEEeeCCCCCcce--eccCCceeeeee
Q 040533 319 SPDGLTVVSAAADETLRFWEAFGPSGSGDF--VSHLDGLLSLKV 360 (364)
Q Consensus 319 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~--~~~~~~v~~~~~ 360 (364)
+++|+++++...++.|..||. +++ ...+ ..+...+.++++
T Consensus 233 ~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~ 274 (299)
T 2z2n_A 233 GAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF 274 (299)
T ss_dssp CSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE
T ss_pred CCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe
Confidence 999987777667889999997 332 2222 233456777776
No 192
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.76 E-value=3.1e-15 Score=125.84 Aligned_cols=241 Identities=8% Similarity=0.079 Sum_probs=167.6
Q ss_pred CCCCCceEEEEcCCCCEEEE-------EecCCcEEEEecCCcceeeeee----cCCCcEEEEEeecCC-CCEEEEeeCCC
Q 040533 85 GEDDFPTSISWSQDAKTLAV-------GYMASKLQLWDAETSKLIRNLE----GHDKRVATASWNHWN-GHILTSGSQDK 152 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~----~~~~~v~~~~~~~~~-~~~l~~~~~dg 152 (364)
..-..+.+++|+++++++++ +..++.|.+||..+++...... ++...+..+++++ + ++++++.. .+
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~-~~ 92 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADM-RL 92 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEET-TT
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEEC-CC
Confidence 33456789999999987777 5678899999988877543221 1446789999998 6 66555544 44
Q ss_pred cEEEEEcccCcceeee-eec----ccCcEEEEEEcCCCCEEEEEeCC---------------CeEEEEeCCCCCCCcceE
Q 040533 153 SIINHDVRVSNNVTSR-INA----HTAEVCGLKWSNEGNLLASGGDD---------------NLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 153 ~i~~~d~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------~~i~iwd~~~~~~~~~~~ 212 (364)
.|.+||.. ++. ... ... ....+.+++++++|++.++...+ +.|..+|.. . + ..
T Consensus 93 ~l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g---~-~~ 165 (314)
T 1pjx_A 93 GLLVVQTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G---Q-MI 165 (314)
T ss_dssp EEEEEETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S---C-EE
T ss_pred CEEEEeCC-CCE-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C---C-EE
Confidence 78899987 442 222 111 12357899999999877776554 567777754 2 1 22
Q ss_pred EecccccceeEEEEc----cCCCcEEEeecCCCCCeEEEEECC-CCeE-----EEEEecC--CCeEEEEEcCCccceeee
Q 040533 213 RFRDHRAAVKALAWC----PYQFNVLASGGGTQDGCIKIWNVQ-KGTC-----IHSVDTK--AQICGLEWNRHHKEILSG 280 (364)
Q Consensus 213 ~~~~~~~~v~~~~~~----~~~~~~~~~~~g~~d~~i~i~d~~-~~~~-----~~~~~~~--~~v~~~~~~~~~~~l~~~ 280 (364)
.+..+......++|+ |+++.++++.. .++.|.+||.. +++. ...+... .....++++++|.+.++.
T Consensus 166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 243 (314)
T 1pjx_A 166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp EEEEEESSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred EeccCCCCcceEEEecccCCCCCEEEEEEC--CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence 222334456789999 99866777654 57899999986 4542 1222222 457889999999887765
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEE-EEeCCCcEEEEEeeCC
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV-SAAADETLRFWEAFGP 342 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~vw~~~~~ 342 (364)
.. ++.|.+||..+++.+..+..+...+.+++|+|+|+.|+ +...++.|..|++...
T Consensus 244 ~~------~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 244 WG------SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ET------TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred cC------CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 33 78999999987877777766667899999999999554 4556688999998653
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.75 E-value=1.1e-15 Score=127.45 Aligned_cols=228 Identities=11% Similarity=0.043 Sum_probs=158.2
Q ss_pred cceeeeeecCCCcEEEEEeecCCCC-EEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeE
Q 040533 119 SKLIRNLEGHDKRVATASWNHWNGH-ILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLV 197 (364)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 197 (364)
+..+..+..+.....+++|+| +++ +++++..++.|..||..++ ...+..+...+.+++++++|+++++...++.|
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i 92 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRL 92 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred CCcEEEEecCCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCcEEEEecCCCeE
Confidence 344455555667788999999 777 8888888999999998865 34455667789999999999988777777899
Q ss_pred EEEeCCCCCCCcceEEecc-cccceeEEEEccCCCcEEEeec--CC-------------CCCeEEEEECCCCeEEEEEec
Q 040533 198 HVWDHSKMSSSKCLHRFRD-HRAAVKALAWCPYQFNVLASGG--GT-------------QDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~--g~-------------~d~~i~i~d~~~~~~~~~~~~ 261 (364)
.+||..++........... ....+..++++|+|. ++++.. |+ ..+.|..++.. ++.......
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~ 170 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD 170 (296)
T ss_dssp EEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC
T ss_pred EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC
Confidence 9999765432111111111 123467899999994 666421 00 13467777665 554444444
Q ss_pred CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC-CCce---eeeccccccceeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 262 KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP-HMTK---WGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~-~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
......++|+|+++.+++.. .++.|++|++. +++. ...+..+...+..++++++|+++++. ++.|.+|
T Consensus 171 ~~~~~gi~~s~dg~~lv~~~------~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLLVSDT------GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp CSSEEEEEECTTSCEEEEET------TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred CCCCccEEECCCCCEEEEeC------CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 46678999999999885543 37899999986 4443 22333345567889999999876666 7899999
Q ss_pred EeeCCCCCcceeccCCceeeeeec-c
Q 040533 338 EAFGPSGSGDFVSHLDGLLSLKVS-P 362 (364)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~~~s-p 362 (364)
+.. ++.+..+..+.. +.+++|+ |
T Consensus 243 ~~~-g~~~~~~~~~~~-~~~~~f~~~ 266 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT-TSNLCFGGP 266 (296)
T ss_dssp CTT-SCEEEEEECSSC-CCEEEEEST
T ss_pred CCC-CCEEEEEECCCC-ceeEEEECC
Confidence 976 566666666666 8899984 5
No 194
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.74 E-value=2.1e-15 Score=127.72 Aligned_cols=283 Identities=11% Similarity=0.017 Sum_probs=188.4
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe----------cCCcEEEEecCCcceeeeeecCC----
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY----------MASKLQLWDAETSKLIRNLEGHD---- 129 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~---- 129 (364)
++.|.++|..+++....... + ..+ . ++++|||++++++. .++.|.+||..+++.+..+.-..
T Consensus 58 ~~~V~ViD~~t~~v~~~I~v-G-~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~ 133 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDG-G-FLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 133 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEE-C-SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CCEEEEEECCCCeEEEEEEC-C-CCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccc
Confidence 57999999999987666553 2 223 4 99999999887775 35789999999999888875321
Q ss_pred ---CcEEEEEeecCCCCEEEEeeC--CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 130 ---KRVATASWNHWNGHILTSGSQ--DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 130 ---~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
.....++|+| ++++++++.. ++.|.++|+.+.+. +..+... + . ...+....+.+++.+.||.+.+.++..
T Consensus 134 ~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~v-v~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 134 LVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVP-D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp CBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEE-EEEEECC-S-E-EEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred ccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcE-EEEEECC-C-c-ceeecCCCceeEEECCCCCEEEEECCC
Confidence 2355789999 8998888764 68999999998764 4444321 1 1 222333445677778888888888765
Q ss_pred CCCCcceEEeccc----cccee-EEEEc-cCCCcEEEeecCCCCCeEEEEECCCCe--EEEEEe--------c---CCCe
Q 040533 205 MSSSKCLHRFRDH----RAAVK-ALAWC-PYQFNVLASGGGTQDGCIKIWNVQKGT--CIHSVD--------T---KAQI 265 (364)
Q Consensus 205 ~~~~~~~~~~~~~----~~~v~-~~~~~-~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~--------~---~~~v 265 (364)
... ........ ..++. ...|. ++|+.++++ .+|.|.+.|+.++. ....+. . ....
T Consensus 209 ~g~--v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs----~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~ 282 (386)
T 3sjl_D 209 EGT--PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPT----YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW 282 (386)
T ss_dssp SSC--CEEEECCCCSCTTSCBCSCCEEETTTTEEEEEB----TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS
T ss_pred CCe--EEEeecceeccccccccccceeEcCCCcEEEEe----CCCEEEEEECCCCcceeecceeccccccccccccCCCc
Confidence 221 11111111 12221 24554 566444543 47899999997654 333332 0 1233
Q ss_pred EEEEEcCCccceeeeccCC-cc---CCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC-EEEEE-eCCCcEEEEEe
Q 040533 266 CGLEWNRHHKEILSGHGFS-SS---GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL-TVVSA-AADETLRFWEA 339 (364)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~-~~---~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~-~~dg~i~vw~~ 339 (364)
..++++++++.++...... .+ ...+.|.++|+.+++.+..+... ..+.++++++|++ +|+++ ..++.|.++|.
T Consensus 283 q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 283 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred ceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 4577789988888763200 00 01368999999999999988643 3678999999997 66665 45899999999
Q ss_pred eCCCCCcceeccCCceeeeeeccC
Q 040533 340 FGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
.+++.++++.. .+.-+.|.++|.
T Consensus 362 ~t~k~~~~i~~-~~~p~~l~~s~d 384 (386)
T 3sjl_D 362 ESGEELRSVNQ-LGHGPQVITTAD 384 (386)
T ss_dssp TTCCEEEEECC-CCSSCCEEEECC
T ss_pred CCCcEEEEecC-CCCCceeEECCc
Confidence 99998887764 234455666653
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.74 E-value=1.6e-13 Score=114.48 Aligned_cols=271 Identities=10% Similarity=-0.006 Sum_probs=182.9
Q ss_pred eecccCCCcc-EEEEE-eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee-e
Q 040533 48 SNMMDWGRNN-ILAIA-LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR-N 124 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-~ 124 (364)
...+..++++ +..+. .++.|.+||.. ++... ..+..+...+.++++.+++++.++...++.|..||.. ++... .
T Consensus 22 p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~ 98 (300)
T 2qc5_A 22 PYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYP 98 (300)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred cceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEec
Confidence 4556666654 44444 46899999988 65543 3333445678999999999877776667889999987 55432 2
Q ss_pred eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 125 LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
+......+..+++.+ +++++++...++.|..+|.. +.............+..+++.+++++.++...++.|..+|. .
T Consensus 99 ~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 175 (300)
T 2qc5_A 99 LPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T 175 (300)
T ss_dssp CSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred CCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence 222346789999998 88888877778899999987 44222222234467899999999987666666788999997 2
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEE-e-cCCCeEEEEEcCCccceeeecc
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV-D-TKAQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~ 282 (364)
... ...........+..+++++++ .++++.. ..+.|..||. +++..... . ....+.+++++++|...++...
T Consensus 176 g~~--~~~~~~~~~~~~~~i~~d~~g-~l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 249 (300)
T 2qc5_A 176 GKL--EEYPLPTNAAAPVGITSGNDG-ALWFVEI--MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG 249 (300)
T ss_dssp CCE--EEEECSSTTCCEEEEEECTTS-SEEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred CcE--EEeeCCCCCCCcceEEECCCC-CEEEEcc--CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC
Confidence 221 111122334568899999988 5666543 4678999998 55544332 2 2356889999999986665532
Q ss_pred CCccCCCCeEEEeeCCCCceee-eccccccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 283 FSSSGDGQKLCLWKYPHMTKWG-ELQHQTSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 283 ~~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
++.|..|+. +++... .+......+.+++++++|++.++.. . .|..++.
T Consensus 250 ------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 250 ------ANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ------TTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ------CCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 689999998 443322 2333345688999999998666554 4 6666665
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.73 E-value=1.2e-15 Score=142.48 Aligned_cols=259 Identities=10% Similarity=-0.008 Sum_probs=167.7
Q ss_pred cCCCCEEEEEecCC---c--EEEEecCCcceeeeee------cCCCcEEEEEeecCCCCEEE-----EeeCCCcEEEEEc
Q 040533 96 SQDAKTLAVGYMAS---K--LQLWDAETSKLIRNLE------GHDKRVATASWNHWNGHILT-----SGSQDKSIINHDV 159 (364)
Q Consensus 96 s~~~~~l~~~~~dg---~--i~iw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~-----~~~~dg~i~~~d~ 159 (364)
+|+|++++....++ . |.+.+...++....+. +|...+..++||| ++++|+ .|+.+..|++||+
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEET
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEEC
Confidence 37888888776543 2 4444444444332222 3455789999999 999888 4445568999999
Q ss_pred ccCcce-eeeeecccCcEEEEEEcCCCCEEEEEeCCCe-------------EEEEeCCCCCCC-cceEEecccccceeEE
Q 040533 160 RVSNNV-TSRINAHTAEVCGLKWSNEGNLLASGGDDNL-------------VHVWDHSKMSSS-KCLHRFRDHRAAVKAL 224 (364)
Q Consensus 160 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------------i~iwd~~~~~~~-~~~~~~~~~~~~v~~~ 224 (364)
.+++.. ...+... ....++|+|||+.|+.++.|.. |++|++.+.... ..+.....+...+..+
T Consensus 155 ~tg~~~~~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 155 DSGEWSKVDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp TTCCBCSSCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCCCcCCcccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 987743 1112111 1257899999999999988776 999998765421 2233333455678899
Q ss_pred EEccCCCcEEEeecCC-CCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-
Q 040533 225 AWCPYQFNVLASGGGT-QDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK- 302 (364)
Q Consensus 225 ~~~~~~~~~~~~~~g~-~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~- 302 (364)
.|+|+|+.++++.... ....|.+++..+++..........+....+ ++|. ++..... ...++.|.+||+.+++.
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~--~~~~~~l~~~d~~~~~~~ 308 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDE--GAPRQRVFEVDPAKPARA 308 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECT--TCTTCEEEEEBTTBCSGG
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECC--CCCCCEEEEEeCCCCCcc
Confidence 9999998887766410 123778887766655444444445555556 5666 5443221 12368999999987653
Q ss_pred -eeeccc-c-ccceeEEeecCCCCEEEEEeCCCcEEEEEee-CCCCCcceecc-CCceeeeeecc
Q 040533 303 -WGELQH-Q-TSRILELSQSPDGLTVVSAAADETLRFWEAF-GPSGSGDFVSH-LDGLLSLKVSP 362 (364)
Q Consensus 303 -~~~~~~-~-~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~-~~~v~~~~~sp 362 (364)
...+.. + ...+..++|+ ++.++++...|+..++|.+. .++....+..+ .+.+..++++|
T Consensus 309 ~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~ 372 (695)
T 2bkl_A 309 SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLE 372 (695)
T ss_dssp GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCT
T ss_pred CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCC
Confidence 233333 3 4567888888 77788999999999998877 34434444444 55677777776
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.73 E-value=5.2e-15 Score=125.20 Aligned_cols=244 Identities=9% Similarity=0.005 Sum_probs=171.6
Q ss_pred cCCcEEEEecCCcceeeeee------cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEE
Q 040533 107 MASKLQLWDAETSKLIRNLE------GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLK 180 (364)
Q Consensus 107 ~dg~i~iw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 180 (364)
.++.|.++|.++++....+. ........+.+. ++.++++...++.|.+||..+.+. +..+. .......++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~-~~~i~-~~~~p~~i~ 90 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKE-VGRIT-GFTSPRYIH 90 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCE-EEEEE-CCSSEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEE-EEEcC-CCCCCcEEE
Confidence 37899999999988765442 122346777774 566667777789999999988774 34443 346688999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccc-----cceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHR-----AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 181 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
++++++.+++...++.|.+||..+.. ....+.... .....+++ ++..++++.. ..++.|.++|+.+++.
T Consensus 91 ~~~~g~lyv~~~~~~~v~~iD~~t~~---~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~-~~~~~v~viD~~t~~~ 164 (328)
T 3dsm_A 91 FLSDEKAYVTQIWDYRIFIINPKTYE---ITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCW-SYQNRILKIDTETDKV 164 (328)
T ss_dssp EEETTEEEEEEBSCSEEEEEETTTTE---EEEEEECTTCCTTTCBCCCEEE--ETTEEEEEEC-TTCCEEEEEETTTTEE
T ss_pred EeCCCeEEEEECCCCeEEEEECCCCe---EEEEEEcCCccccCCCcceEEE--ECCEEEEEcC-CCCCEEEEEECCCCeE
Confidence 99988544444378999999977643 233333222 14566777 3446666642 1378999999999999
Q ss_pred EEEEecCCCeEEEEEcCCccceeeeccCC----ccCCCCeEEEeeCCCCceeeecccc-ccceeEEeecCCCCEEEEEeC
Q 040533 256 IHSVDTKAQICGLEWNRHHKEILSGHGFS----SSGDGQKLCLWKYPHMTKWGELQHQ-TSRILELSQSPDGLTVVSAAA 330 (364)
Q Consensus 256 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~ 330 (364)
+..+........+.++|+|+++++..... ...+.+.|.++|..+++....+... ......++++|++++|+++..
T Consensus 165 ~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 165 VDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp EEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 98888777778999999999777654210 0001378999999998877666532 236789999999999988765
Q ss_pred CCcEEEEEeeCCCCCcc--eeccCCceeeeeecc
Q 040533 331 DETLRFWEAFGPSGSGD--FVSHLDGLLSLKVSP 362 (364)
Q Consensus 331 dg~i~vw~~~~~~~~~~--~~~~~~~v~~~~~sp 362 (364)
.|.+||..+++.... +........+++++|
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp 276 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNP 276 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECT
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcC
Confidence 899999988775422 222245688899988
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.72 E-value=1.1e-13 Score=118.83 Aligned_cols=264 Identities=9% Similarity=-0.013 Sum_probs=178.7
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe----------cCCcEEEEecCCcceeeeeecC-------
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY----------MASKLQLWDAETSKLIRNLEGH------- 128 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~------- 128 (364)
.|.++|..+++...... .... . .++++|||++++++. .++.|.+||..+.+.+..+...
T Consensus 48 ~v~v~D~~t~~~~~~i~--~g~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVN--GGFL-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV 123 (373)
T ss_pred EEEEEECCCCeEEEEec--CCCC-C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 88999999988754433 2222 3 999999999999885 3578999999998887776532
Q ss_pred CCcEEEEEeecCCCCEEEEeeC--CCcEEEEEcccCcceeee-eecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQ--DKSIINHDVRVSNNVTSR-INAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~ 204 (364)
......++|+| ++++|+++.. ++.|.++| .+++. ... +.. .. ++.+.|++ +.+++.+.||.+.++|. .
T Consensus 124 g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~-~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~ 195 (373)
T 2mad_H 124 GPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSS-DDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-A 195 (373)
T ss_pred CCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCE-EeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-C
Confidence 12345789999 9999888874 47899999 77653 333 322 22 24445544 45666778999999998 5
Q ss_pred CCCCcceEEec-----ccccc-eeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe--EEEEEec-----------CCCe
Q 040533 205 MSSSKCLHRFR-----DHRAA-VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT--CIHSVDT-----------KAQI 265 (364)
Q Consensus 205 ~~~~~~~~~~~-----~~~~~-v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~-----------~~~v 265 (364)
... ..... ....+ .....+.+++..++... ..+.+.+.|+.++. .+..+.. ....
T Consensus 196 g~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~ 269 (373)
T 2mad_H 196 GGA---AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV---YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGW 269 (373)
T ss_pred CcE---EEEEeccccccCCcceeecceeEecCCEEEEEc---CCceEEEEeccCCcceEeeeeeecCCcccccceecCce
Confidence 432 21111 11112 12345666665555543 47899999997652 2233321 1223
Q ss_pred EEEEEcCCccceeeeccCCc----cCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC-EEEEEe-CCCcEEEEEe
Q 040533 266 CGLEWNRHHKEILSGHGFSS----SGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL-TVVSAA-ADETLRFWEA 339 (364)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~~----~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~dg~i~vw~~ 339 (364)
..+.++|+++.+++...-.. ....+.|.++|..+++.+.++... ....+++|+|||+ +++++. .++.|.++|+
T Consensus 270 ~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 44788999888877532100 002468999999999999888643 3578999999999 788877 5899999999
Q ss_pred eCCCCCcce
Q 040533 340 FGPSGSGDF 348 (364)
Q Consensus 340 ~~~~~~~~~ 348 (364)
.+.+.+..+
T Consensus 349 ~t~~vv~~i 357 (373)
T 2mad_H 349 GAGDQDQST 357 (373)
T ss_pred CCCCEEeee
Confidence 999888773
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.72 E-value=4.8e-15 Score=121.86 Aligned_cols=239 Identities=7% Similarity=-0.022 Sum_probs=160.0
Q ss_pred eeecccCCCcc-EEE-E-EeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 47 YSNMMDWGRNN-ILA-I-ALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~-~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
....+++++++ +++ + ..++.|.+|+..+...... . ..+...+.+++++++|+++++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-~-~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-P-FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-C-CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-e-eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee
Confidence 45667777754 444 3 4568999999766543221 1 13345688999999998666655 8899999987654332
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
........+..++++| +++++++...++.|.+|+..+.... .........+.+++++++++++++...++.|.+||..
T Consensus 102 ~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQT-VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp CCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCE-ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred eecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeE-eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 2222335789999999 8888887777889999976544321 1122223457889999999877777777899999976
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeecc
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHG 282 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~ 282 (364)
.... ......+...+.++++++++ .++++.. .++.|.+||............ ...+.+++++++|+.+++...
T Consensus 180 ~~~~---~~~~~~~~~~p~~i~~d~~g-~l~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 180 SNNQ---VVLPFTDITAPWGIAVDEAG-TVYVTEH--NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp TCCE---EECCCSSCCSEEEEEECTTC-CEEEEET--TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred CCce---EeecccCCCCceEEEECCCC-CEEEEEC--CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence 5321 11112223567899999998 6666654 578999999876544332222 256899999999986666544
Q ss_pred CCccCCCCeEEEeeCCCCce
Q 040533 283 FSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 283 ~~~~~~~~~i~i~d~~~~~~ 302 (364)
++.|+++++...+.
T Consensus 254 ------~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 254 ------NDRVVKLTSLEHHH 267 (270)
T ss_dssp ------GTEEEEECCCGGGS
T ss_pred ------CCEEEEEcCCCccc
Confidence 89999999876543
No 200
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.71 E-value=2.1e-13 Score=113.65 Aligned_cols=259 Identities=9% Similarity=0.016 Sum_probs=177.4
Q ss_pred cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee-eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC
Q 040533 84 TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR-NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 84 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
......+.++++.++|++.++...++.|.+||.. ++... .+......+..+++.+ ++.++++...++.|..+|.. +
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCC-C
Confidence 3445678999999999987777678999999987 55433 2223346789999998 88888777777889999987 4
Q ss_pred cceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC
Q 040533 163 NNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 242 (364)
.............+.++++.++++++++...++.|..+|.. ... ....+......+..+++.+++. ++++.. .+
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~--~~~~~~~~~~~~~~i~~d~~g~-l~v~~~--~~ 166 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI--YEYDLPNKGSYPAFITLGSDNA-LWFTEN--QN 166 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE--EEEECSSTTCCEEEEEECTTSS-EEEEET--TT
T ss_pred CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE--EEccCCCCCCCceeEEECCCCC-EEEEec--CC
Confidence 43222222234678999999999888777668899999865 221 1112222345688999999985 665543 47
Q ss_pred CeEEEEECCCCeEEEEEec---CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeee-ccccccceeEEee
Q 040533 243 GCIKIWNVQKGTCIHSVDT---KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE-LQHQTSRILELSQ 318 (364)
Q Consensus 243 ~~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~ 318 (364)
+.|..+|. +++... +.. ...+..++++++|...++... .+.|.+|+. +++.... +..+...+.++++
T Consensus 167 ~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 237 (300)
T 2qc5_A 167 NSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIM------GNKIGRITT-TGEISEYDIPTPNARPHAITA 237 (300)
T ss_dssp TEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred CeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccC------CCEEEEEcC-CCcEEEEECCCCCCCceEEEE
Confidence 88999998 555443 322 245889999999976665532 678999998 4443332 3334566889999
Q ss_pred cCCCCEEEEEeCCCcEEEEEeeCCCCCcce--eccCCceeeeeecc
Q 040533 319 SPDGLTVVSAAADETLRFWEAFGPSGSGDF--VSHLDGLLSLKVSP 362 (364)
Q Consensus 319 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~--~~~~~~v~~~~~sp 362 (364)
+++|++.++...++.|..|+. +++. ..+ ......+.++++.|
T Consensus 238 d~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~ 281 (300)
T 2qc5_A 238 GKNSEIWFTEWGANQIGRITN-DNTI-QEYQLQTENAEPHGITFGK 281 (300)
T ss_dssp CSTTCEEEEETTTTEEEEECT-TSCE-EEEECCSTTCCCCCEEECT
T ss_pred CCCCCEEEeccCCCeEEEECC-CCcE-EEEECCccCCccceeEeCC
Confidence 999987777667789999987 3322 222 12234566666655
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.71 E-value=5e-15 Score=139.17 Aligned_cols=246 Identities=11% Similarity=0.020 Sum_probs=158.5
Q ss_pred CCCCceEEEEcCCCCEEEEEecC-----CcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCc-------
Q 040533 86 EDDFPTSISWSQDAKTLAVGYMA-----SKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKS------- 153 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~------- 153 (364)
|...+..++|||||++||.+..+ ..|++||+.+++.+.... +...+..++|+| + +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEEST-T-SEEEEEECCCC-------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEEC-C-CEEEEEEecCcccccccc
Confidence 33468899999999999987654 359999999998765321 222235789999 7 87777776554
Q ss_pred -------EEEEEcccCcc---eeeeeecccCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCCCCcceEEecccc
Q 040533 154 -------IINHDVRVSNN---VTSRINAHTAEVCGLKWSNEGNLLASGGDDN-----LVHVWDHSKMSSSKCLHRFRDHR 218 (364)
Q Consensus 154 -------i~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~ 218 (364)
|++|++.++.. ++.....+...+..+.|+|||++|+..+.++ .|++||+..+.. +....+..+.
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~ 316 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI-GPVTALIPDL 316 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE-CCCEEEECSS
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC-cccEEecCCC
Confidence 88999876542 1222222334588999999999888877543 899999865411 1133444444
Q ss_pred cceeEEEEccCCCcEEEeec-CCCCCeEEEEECCCC--eEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEE
Q 040533 219 AAVKALAWCPYQFNVLASGG-GTQDGCIKIWNVQKG--TCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 219 ~~v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i 294 (364)
..+.... +|++..+++... +..++.|.+||+.++ +....+... ..+..+.++ ++..+++... ++..++
T Consensus 317 ~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~------dg~~~l 388 (741)
T 1yr2_A 317 KAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIH------DAKSQV 388 (741)
T ss_dssp SSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEE------TTEEEE
T ss_pred CceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEE------CCEEEE
Confidence 4444443 478877766543 112567999999874 333334333 335667777 4445555432 666666
Q ss_pred eeCC-CCceeeeccc-cccceeEEeecCCCCEEEEE----eCCCcEEEEEeeCCC
Q 040533 295 WKYP-HMTKWGELQH-QTSRILELSQSPDGLTVVSA----AADETLRFWEAFGPS 343 (364)
Q Consensus 295 ~d~~-~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~----~~dg~i~vw~~~~~~ 343 (364)
|.+. +++....+.. +...+..+.++|+++.|+.. ...++|++||+.+++
T Consensus 389 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 6543 4555666654 35678899999998866532 335789999987654
No 202
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.70 E-value=3e-14 Score=117.09 Aligned_cols=211 Identities=12% Similarity=0.075 Sum_probs=154.1
Q ss_pred CCccEE-EEEeCCeEEEEECCCCceeeeeeecCCC-CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC-CC
Q 040533 54 GRNNIL-AIALGLELYLWKQENGEVQKLLKVTGED-DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH-DK 130 (364)
Q Consensus 54 ~~~~~~-~~~~~~~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~ 130 (364)
+|++++ +++.++.|++||.++++..-.+. .+. ..+.++.++|+|++++ +.++.|..||. +++.+..+..+ ..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYP--LEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEE--CCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeC--CCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 455554 44568999999998998754443 443 4689999999999888 34678999998 89999888865 35
Q ss_pred cEEEEEeecCCCCEEEEeeC-CCcEEEEEcccCcceeeeee------cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 131 RVATASWNHWNGHILTSGSQ-DKSIINHDVRVSNNVTSRIN------AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.+.++.+.| +++++++.+. ++.+..+|.. ++. +..+. .+......+++.++|+++++...++.|..||..
T Consensus 78 ~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~-Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 78 EMQTARILP-DGNALVAWCGHPSTILEVNMK-GEV-LSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEEEEEECT-TSCEEEEEESTTEEEEEECTT-SCE-EEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred cccccEECC-CCCEEEEecCCCCEEEEEeCC-CCE-EEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 788999999 9999998887 7777777753 432 22222 122234556788999999999999999999965
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-------CCeEEEEEcCCccc
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-------AQICGLEWNRHHKE 276 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-------~~v~~~~~~~~~~~ 276 (364)
+ +.+.++... ..+.++...+++. +++++. .++.|..+|..+++.+..+... ..+..+...++|..
T Consensus 155 -G---~~~w~~~~~-~~~~~~~~~~~g~-~~v~~~--~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 155 -G---QLLNSVKLS-GTPFSSAFLDNGD-CLVACG--DAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp -S---CEEEEEECS-SCCCEEEECTTSC-EEEECB--TTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred -C---CEEEEEECC-CCccceeEcCCCC-EEEEeC--CCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence 3 446666543 4566778888884 555543 5778999999999999888632 12567777777776
Q ss_pred eeee
Q 040533 277 ILSG 280 (364)
Q Consensus 277 l~~~ 280 (364)
+++.
T Consensus 227 ~v~~ 230 (276)
T 3no2_A 227 YICN 230 (276)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6654
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.69 E-value=1.6e-14 Score=135.69 Aligned_cols=243 Identities=12% Similarity=0.041 Sum_probs=159.7
Q ss_pred ceeecccCCCcc-EEEEEeC------CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCc--------
Q 040533 46 YYSNMMDWGRNN-ILAIALG------LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASK-------- 110 (364)
Q Consensus 46 ~~~~~~~~~~~~-~~~~~~~------~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-------- 110 (364)
..+..++|||++ .++.+.+ ..|++||+.+++..... . +...+..++|+|| +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-L--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-E--EEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-C--CCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 357788999974 5554432 36999999999875431 1 1222457899999 99988876554
Q ss_pred ------EEEEecCCcce--eeeee--cCCCcEEEEEeecCCCCEEEEeeCCC-----cEEEEEcccCcce-eeeeecccC
Q 040533 111 ------LQLWDAETSKL--IRNLE--GHDKRVATASWNHWNGHILTSGSQDK-----SIINHDVRVSNNV-TSRINAHTA 174 (364)
Q Consensus 111 ------i~iw~~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~-~~~~~~~~~ 174 (364)
|++|++.++.. ...+. .+...+..+.|+| ++++|+..+.++ .|++||+.++... ...+..+..
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence 89999877652 22222 2334588999999 998888777544 8999999876222 333444444
Q ss_pred cEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEEC
Q 040533 175 EVCGLKWSNEGNLLASGGDD----NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 250 (364)
.+.... +|+++.|+..+.+ +.|.+||+.... ......+..+...+..++|. +..++++.. .|+..++|.+
T Consensus 318 ~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~--~dg~~~l~~~ 391 (741)
T 1yr2_A 318 AQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA--GNRLFASYI--HDAKSQVLAF 391 (741)
T ss_dssp SCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE--BTEEEEEEE--ETTEEEEEEE
T ss_pred ceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE--CCEEEEEEE--ECCEEEEEEE
Confidence 455443 4888888887753 459999987642 12223333444556677776 346777765 6777666654
Q ss_pred C-CCeEEEEEec--CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 251 Q-KGTCIHSVDT--KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 251 ~-~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
. +++....+.. ...+..+.++|++..++.... +....+.|++||+.+++
T Consensus 392 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s--s~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 392 DLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFS--SFTQPATVLALDPATAK 443 (741)
T ss_dssp ETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEE--ETTEEEEEEEEETTTTE
T ss_pred eCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEc--CCCCCCEEEEEECCCCc
Confidence 3 4555666653 456888999999987764421 12336889999998876
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.68 E-value=1.4e-13 Score=119.66 Aligned_cols=238 Identities=10% Similarity=0.039 Sum_probs=163.9
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC--cEEEEEcccCcce
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK--SIINHDVRVSNNV 165 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~ 165 (364)
..+..++|+++++++++...++.|++||.+++......... .... ++|+| +++.|+++..++ .|.+++......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~- 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWA- 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTC-
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCce-
Confidence 46789999999997777777789999999887766555543 3334 99999 888888888766 788888765543
Q ss_pred eeee----ecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEE--ecccccce-e-EEEEccCCCcEEEee
Q 040533 166 TSRI----NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHR--FRDHRAAV-K-ALAWCPYQFNVLASG 237 (364)
Q Consensus 166 ~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~v-~-~~~~~~~~~~~~~~~ 237 (364)
...+ ......+.+++++|++..|+.+..++.|+.||...... ..+.. ..+....- . .++|+|++..++++.
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 2222 11445678899999555566677788999999775421 11100 11122222 3 899999766788876
Q ss_pred cCCCCCeEEEEECCCCeEEEEEecC---------------CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 238 GGTQDGCIKIWNVQKGTCIHSVDTK---------------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 238 ~g~~d~~i~i~d~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
. .++.|+.|+.... ........ .....++++++|.++++-. ..++.|+.|++.++..
T Consensus 286 ~--~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-----~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 286 Q--NLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-----FKGYCLRKLDILDGYV 357 (409)
T ss_dssp T--TTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET-----TTTCEEEEEETTTTEE
T ss_pred C--CCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC-----CCCCEEEEEECCCCEE
Confidence 5 6889999997644 22222211 2478899999998665543 0388999999877654
Q ss_pred eeecccc---------------ccceeEEeecCCCCEEEEEeCCCcEEEEEe
Q 040533 303 WGELQHQ---------------TSRILELSQSPDGLTVVSAAADETLRFWEA 339 (364)
Q Consensus 303 ~~~~~~~---------------~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~ 339 (364)
..+.++ -.....++++++|.++++-..++.|+.+++
T Consensus 358 -~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 -STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 333332 245789999999888888888889988875
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.67 E-value=6.4e-14 Score=120.87 Aligned_cols=270 Identities=9% Similarity=0.022 Sum_probs=182.4
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe----------cCCcEEEEecCCcceeeeeecC------
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY----------MASKLQLWDAETSKLIRNLEGH------ 128 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~------ 128 (364)
+.|.++|..+++....+... .. . .++++||+++|+++. .++.|.++|..+++.+..+.-.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG--~~-P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~ 174 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGG--FL-P-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL 174 (426)
T ss_dssp EEEEEEETTTTEEEEEEEEC--SS-C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CeEEEEECCCCEEEEEEECC--CC-C-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc
Confidence 69999999999987666652 22 3 899999999888875 3678999999999988877532
Q ss_pred -CCcEEEEEeecCCCCEEEEeeC--CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC
Q 040533 129 -DKRVATASWNHWNGHILTSGSQ--DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 129 -~~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~ 204 (364)
......+.|+| ++++++++.. ++.|.+.|+.+.+. +..+... . . ....|++ ..+++.+.||.+.+.+...
T Consensus 175 ~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~-g-~--~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 175 VGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTF-DRMLDVP-D-C--YHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp BSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEE-EEEEECC-S-E--EEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred cCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeE-EEEEEcC-C-c--eeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 12345789999 9998888764 57899999987764 3333321 1 1 2223332 4556666777777777633
Q ss_pred CCCCcce-EEecccccc-eeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE--EEEec-----------CCCeEEEE
Q 040533 205 MSSSKCL-HRFRDHRAA-VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI--HSVDT-----------KAQICGLE 269 (364)
Q Consensus 205 ~~~~~~~-~~~~~~~~~-v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~-----------~~~v~~~~ 269 (364)
....... ..+.....+ ...+.+.+++..++++. ..+.+.+.|+..+... ..+.. ......++
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s---~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va 325 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT---YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTA 325 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB---TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEE
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe---CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeE
Confidence 2210000 011111111 12356788887777765 4789999998765432 11111 01122378
Q ss_pred EcCCccceeeeccCC-cc---CCCCeEEEeeCCCCceeeeccccccceeEEeecCCCC-EEEEEe-CCCcEEEEEeeCCC
Q 040533 270 WNRHHKEILSGHGFS-SS---GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGL-TVVSAA-ADETLRFWEAFGPS 343 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~-~~---~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~dg~i~vw~~~~~~ 343 (364)
++|+++.+++..... .+ ..++.|.++|..+.+.+.++.... ....+.|+|||+ +++++. .++.|.++|+.+.+
T Consensus 326 ~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 326 YHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 999998887764210 00 014689999999999999886433 478999999999 888887 58999999999999
Q ss_pred CCcce
Q 040533 344 GSGDF 348 (364)
Q Consensus 344 ~~~~~ 348 (364)
.++++
T Consensus 405 vv~tI 409 (426)
T 3c75_H 405 ELRSV 409 (426)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88776
No 206
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.66 E-value=5.6e-13 Score=111.09 Aligned_cols=227 Identities=11% Similarity=0.111 Sum_probs=155.6
Q ss_pred CCCceEEEEcCCCC-EEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 87 DDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 87 ~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
.....+..|+|++. ++++...++.|..||..+++. ..+. ....+.+++++| +++++++ . +..|.+||..++..
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~- 85 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSA- 85 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEE-
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcE-
Confidence 34456889999654 556666788999999987765 3333 456799999999 8885554 3 56799999876542
Q ss_pred eeeeec----ccCcEEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCc
Q 040533 166 TSRINA----HTAEVCGLKWSNEGNLLASGGDD---------NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFN 232 (364)
Q Consensus 166 ~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (364)
...... ....++.++++|+|+++++.... ..-.+|.+.... + ...+.........++|+|+++.
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g--~-~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH--H-VKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS--C-EEEEEEEESBEEEEEECTTSCE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC--C-EEEEeeccccccceEEcCCCCE
Confidence 211111 12457899999999966654321 223444433221 1 2223333445678999999987
Q ss_pred EEEeecCCCCCeEEEEEC--CCCeEE--EEE---e-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee
Q 040533 233 VLASGGGTQDGCIKIWNV--QKGTCI--HSV---D-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG 304 (364)
Q Consensus 233 ~~~~~~g~~d~~i~i~d~--~~~~~~--~~~---~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~ 304 (364)
++++.. .++.|.+||+ .++... +.+ . .......++++++|.+.++... ++.|..||..+++.+.
T Consensus 163 lyv~~~--~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~------~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 163 FYYIDS--LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN------GGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp EEEEEG--GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET------TTEEEEECTTTCCEEE
T ss_pred EEEecC--CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC------CCEEEEEcCCCceEEE
Confidence 877765 6889999987 455432 122 1 1245788999999987776543 6789999999999998
Q ss_pred eccccccceeEEeec-CCCCEEEEEeC
Q 040533 305 ELQHQTSRILELSQS-PDGLTVVSAAA 330 (364)
Q Consensus 305 ~~~~~~~~i~~i~~~-~~~~~l~~~~~ 330 (364)
.+..+...+++++|. |+++.|+.++.
T Consensus 235 ~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 235 TVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 888777789999998 88887766543
No 207
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.66 E-value=1.3e-12 Score=112.08 Aligned_cols=245 Identities=5% Similarity=-0.083 Sum_probs=166.2
Q ss_pred cccCCCcc-EEEEEe-----------CCeEEEEECCCCceeeeeeecC-----CCCCceEEEEcCCCCEEEEEec--CCc
Q 040533 50 MMDWGRNN-ILAIAL-----------GLELYLWKQENGEVQKLLKVTG-----EDDFPTSISWSQDAKTLAVGYM--ASK 110 (364)
Q Consensus 50 ~~~~~~~~-~~~~~~-----------~~~i~iw~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~--dg~ 110 (364)
.+.++|++ .+.++. ++.|.+||..+.+......+.+ +......++|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 67788864 444432 5789999999887765554421 0134568999999999998874 478
Q ss_pred EEEEecCCcceeee-eecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee----ecccCcE-EEEEEcCC
Q 040533 111 LQLWDAETSKLIRN-LEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI----NAHTAEV-CGLKWSNE 184 (364)
Q Consensus 111 i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~v-~~~~~~~~ 184 (364)
|.++| ++++.+.. +.. ... +.+.|.....+++.+.||.+.++|. +++...... .....++ ....+.++
T Consensus 150 v~viD-~t~~~~~~~i~~-~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSS-PTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred EEEEE-CCCCEEeEEcCC-Cce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence 99999 99988877 653 222 4455635567777888999999999 665431111 0111221 23456666
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCcceEEecc----------cccceeEEEEccCCCcEEEeecCC-------CCCeEEE
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD----------HRAAVKALAWCPYQFNVLASGGGT-------QDGCIKI 247 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~g~-------~d~~i~i 247 (364)
+..++..+..+.+.+.|+..... ..+..+.. .......+.++|+++.++++.... ..+.|.+
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V 302 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence 65555555788999999864321 11222211 122244578999998877764200 1368999
Q ss_pred EECCCCeEEEEEecCCCeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeec
Q 040533 248 WNVQKGTCIHSVDTKAQICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 248 ~d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
+|+.+++.+..+........+.|+|+|+ .++++. ..++.|.++|..+++.+..+
T Consensus 303 ID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~-----~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 303 VTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS-----AGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEc-----CCCCeEEEEECCCCCEEeee
Confidence 9999999999998888899999999999 666653 23799999999999998874
No 208
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.66 E-value=1.7e-13 Score=116.14 Aligned_cols=259 Identities=11% Similarity=0.040 Sum_probs=175.5
Q ss_pred ccCCCcc--EEEEE----------eCCeEEEEECCCCceeeeeeecC-----CCCCceEEEEcCCCCEEEEEec--CCcE
Q 040533 51 MDWGRNN--ILAIA----------LGLELYLWKQENGEVQKLLKVTG-----EDDFPTSISWSQDAKTLAVGYM--ASKL 111 (364)
Q Consensus 51 ~~~~~~~--~~~~~----------~~~~i~iw~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~--dg~i 111 (364)
+.++|++ ++++. .++.|.+||..+++......+.. .......++|+|||++|+++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 6677754 43433 25789999999998876665532 1235778999999999988864 6899
Q ss_pred EEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc----cCcEE-EEEEc-CCC
Q 040533 112 QLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH----TAEVC-GLKWS-NEG 185 (364)
Q Consensus 112 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~~v~-~~~~~-~~~ 185 (364)
.++|+.+++.+.++.... . ...+ |...+.+++.+.||.+.+.++............+ ..++. ...|. ++|
T Consensus 163 sVID~~t~~vv~tI~v~g-~--~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG 238 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPD-C--YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 238 (386)
T ss_dssp EEEETTTTEEEEEEECCS-E--EEEE-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred EEEECCCCcEEEEEECCC-c--ceee-cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence 999999999998886422 1 2223 4366777788889999999987633322211111 12221 23554 577
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCcceEEec----------ccccceeEEEEccCCCcEEEeec----CC---CCCeEEEE
Q 040533 186 NLLASGGDDNLVHVWDHSKMSSSKCLHRFR----------DHRAAVKALAWCPYQFNVLASGG----GT---QDGCIKIW 248 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~----g~---~d~~i~i~ 248 (364)
++++ .+.+|.|++.|+..... +.+..+. -.......++++|+++.++++.. ++ ..+.|.++
T Consensus 239 ~~~~-vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~vi 316 (386)
T 3sjl_D 239 RLVW-PTYTGKIHQIDLSSGDA-KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL 316 (386)
T ss_dssp EEEE-EBTTSEEEEEECTTSSC-EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred cEEE-EeCCCEEEEEECCCCcc-eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEE
Confidence 5444 56689999999865431 1122221 01234456788999888888642 00 13679999
Q ss_pred ECCCCeEEEEEecCCCeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCC
Q 040533 249 NVQKGTCIHSVDTKAQICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPD 321 (364)
Q Consensus 249 d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 321 (364)
|+.+++.+..+.....+..+.++++++ +|+++. ..++.|.++|..+++.+.++..... -..+.+++|
T Consensus 317 D~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn-----~~~~~VsViD~~t~k~~~~i~~~~~-p~~l~~s~d 384 (386)
T 3sjl_D 317 DAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS-----TGDKTLYIHDAESGEELRSVNQLGH-GPQVITTAD 384 (386)
T ss_dssp ETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEE-----TTTTEEEEEETTTCCEEEEECCCCS-SCCEEEECC
T ss_pred ECCCCeEEEEEECCCCcceEEECCCCCeEEEEEc-----CCCCeEEEEECCCCcEEEEecCCCC-CceeEECCc
Confidence 999999999998888899999999997 566643 2389999999999999988864432 345666655
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.61 E-value=2.4e-12 Score=108.65 Aligned_cols=221 Identities=8% Similarity=-0.004 Sum_probs=150.3
Q ss_pred ceEEEEcCCCC-EEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee
Q 040533 90 PTSISWSQDAK-TLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR 168 (364)
Q Consensus 90 v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 168 (364)
..+.+|+|++. ++++...++.|..||.++++.. .+. ....+.+++|+| +++++++. .+ .|.+||..++.. ...
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~-~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVL-TLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCE-EEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcE-EEE
Confidence 45788999754 5566667889999999877543 333 356799999999 88877654 44 499999876652 211
Q ss_pred eec----ccCcEEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeec
Q 040533 169 INA----HTAEVCGLKWSNEGNLLASGGD------DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 169 ~~~----~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
... ....+..++++|+|+++++... .+.|..++ .. + ...+.........++|+|+++.++++..
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g---~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG---K-VTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT---E-EEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC---c-EEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 111 1235889999999987665432 24566665 22 1 2222233345678999999977777654
Q ss_pred CCCCCeEEEEECC--CC-e-----EEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 239 GTQDGCIKIWNVQ--KG-T-----CIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 239 g~~d~~i~i~d~~--~~-~-----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
.++.|.+||+. ++ . ....+. .......++++++|.+.++... ++.|..|+. +++.+..+..+
T Consensus 199 --~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~------~~~v~~~d~-~g~~~~~i~~~ 269 (326)
T 2ghs_A 199 --KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG------EGAVDRYDT-DGNHIARYEVP 269 (326)
T ss_dssp --TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET------TTEEEEECT-TCCEEEEEECS
T ss_pred --CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC------CCEEEEECC-CCCEEEEEECC
Confidence 67899999986 55 3 122222 1245678999999987766533 678999998 67777777767
Q ss_pred ccceeEEeec-CCCCEEEEEeCC
Q 040533 310 TSRILELSQS-PDGLTVVSAAAD 331 (364)
Q Consensus 310 ~~~i~~i~~~-~~~~~l~~~~~d 331 (364)
...+++++|+ ++++.|+.++..
T Consensus 270 ~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 270 GKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CSBEEEEEEESTTSCEEEEEEBC
T ss_pred CCCcEEEEEecCCCCEEEEEecC
Confidence 6779999998 888877555443
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.61 E-value=8.5e-13 Score=110.84 Aligned_cols=220 Identities=11% Similarity=0.125 Sum_probs=151.2
Q ss_pred CCCcEEEEEeecCCCCEEEE-------eeCCCcEEEEEcccCcceeeee---ecccCcEEEEEEcCC-CCEEEEEeCCCe
Q 040533 128 HDKRVATASWNHWNGHILTS-------GSQDKSIINHDVRVSNNVTSRI---NAHTAEVCGLKWSNE-GNLLASGGDDNL 196 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~-------~~~dg~i~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~~~~d~~ 196 (364)
.-....+++|++ ++.++++ +..++.|.+||..+++...... .++...+.+++++++ ++++++ +..+.
T Consensus 16 ~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~ 93 (314)
T 1pjx_A 16 DIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLG 93 (314)
T ss_dssp CCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTE
T ss_pred cCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCC
Confidence 334568899998 8888888 6778899999987665321111 124467899999999 765544 44457
Q ss_pred EEEEeCCCCCCCcceEEe-c-----ccccceeEEEEccCCCcEEEeecCCCC---------------CeEEEEECCCCeE
Q 040533 197 VHVWDHSKMSSSKCLHRF-R-----DHRAAVKALAWCPYQFNVLASGGGTQD---------------GCIKIWNVQKGTC 255 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~-~-----~~~~~v~~~~~~~~~~~~~~~~~g~~d---------------~~i~i~d~~~~~~ 255 (364)
|.+||.. .. ...+ . .....+.++++++++. ++++.. .+ +.|..||.. ++.
T Consensus 94 l~~~d~~-g~----~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (314)
T 1pjx_A 94 LLVVQTD-GT----FEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAP--AGEVAPADYTRSMQEKFGSIYCFTTD-GQM 164 (314)
T ss_dssp EEEEETT-SC----EEECCSBCTTSCBCBCCCEEEECTTSC-EEEEEC--BCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred EEEEeCC-CC----EEEEEeccCCCccccCCcCEEECCCCC-EEEEec--CcccccccccccccCCCCeEEEECCC-CCE
Confidence 9999976 32 2222 1 1123578999999985 555442 23 578888876 555
Q ss_pred EEEEecCCCeEEEEEc----CCccceeeeccCCccCCCCeEEEeeCC-CCc-----eeeeccccc-cceeEEeecCCCCE
Q 040533 256 IHSVDTKAQICGLEWN----RHHKEILSGHGFSSSGDGQKLCLWKYP-HMT-----KWGELQHQT-SRILELSQSPDGLT 324 (364)
Q Consensus 256 ~~~~~~~~~v~~~~~~----~~~~~l~~~~~~~~~~~~~~i~i~d~~-~~~-----~~~~~~~~~-~~i~~i~~~~~~~~ 324 (364)
............++++ |+++.++.+. ..++.|.+|+.. +++ ....+..+. ..+..++++++|++
T Consensus 165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~-----~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 239 (314)
T 1pjx_A 165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAE-----TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL 239 (314)
T ss_dssp EEEEEEESSEEEEEEEECTTSCEEEEEEEE-----TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred EEeccCCCCcceEEEecccCCCCCEEEEEE-----CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE
Confidence 4444444557889999 9997665543 227899999976 343 223344443 56788999999998
Q ss_pred EEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeeccC
Q 040533 325 VVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 325 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~sp~ 363 (364)
+++...++.|.+||..+++....+..+...+.+++|+|.
T Consensus 240 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~d 278 (314)
T 1pjx_A 240 LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQ 278 (314)
T ss_dssp EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTT
T ss_pred EEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCC
Confidence 888878899999998867776666666678899999874
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.60 E-value=1.5e-13 Score=128.00 Aligned_cols=245 Identities=13% Similarity=0.096 Sum_probs=159.4
Q ss_pred CCCCCceEEEEcCCCCEEEEEec-----CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC-------
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYM-----ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK------- 152 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------- 152 (364)
++...+..++|||||++||.+.. ...|++||+++++.+.... .......++|+ +++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL--GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE--TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe--CCCEEEEEEecCccccccc
Confidence 45557888999999999986542 2469999999998654311 11113567898 667677766663
Q ss_pred ------cEEEEEcccCcc---eeeeeec-ccCcEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCCCCcceEEecccc
Q 040533 153 ------SIINHDVRVSNN---VTSRINA-HTAEVCGLKWSNEGNLLASGGD----DNLVHVWDHSKMSSSKCLHRFRDHR 218 (364)
Q Consensus 153 ------~i~~~d~~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~ 218 (364)
.|++|++.+... .+..... |......+.|+|||++|+.... +..|+++|+..+.. ....+..+.
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~--~~~~l~~~~ 280 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA--PLLTVQGDL 280 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC--CCEEEECSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC--ceEEEeCCC
Confidence 399999876653 2222223 4455788999999998765432 35899999876431 234444455
Q ss_pred cceeEEEEccCCCcEEEeec-CCCCCeEEEEECCCCeE---EEEEecCCCeEEEEEcCCccceeeeccCCccCCCC--eE
Q 040533 219 AAVKALAWCPYQFNVLASGG-GTQDGCIKIWNVQKGTC---IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ--KL 292 (364)
Q Consensus 219 ~~v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~--~i 292 (364)
...... |++++..+++... +...+.|..+|+.++.. .....+...+. .|+++++.|+.... .++ .|
T Consensus 281 ~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~-----~~g~~~l 352 (693)
T 3iuj_A 281 DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM-----VDATARV 352 (693)
T ss_dssp SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE-----ETTEEEE
T ss_pred CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE-----ECCeeEE
Confidence 555444 6667767766653 11247899999988654 22233333443 88999988876542 133 68
Q ss_pred EEeeCCCCceeeecc-ccccceeEEeecCCCCEEEEEeCC----CcEEEEEeeCCC
Q 040533 293 CLWKYPHMTKWGELQ-HQTSRILELSQSPDGLTVVSAAAD----ETLRFWEAFGPS 343 (364)
Q Consensus 293 ~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d----g~i~vw~~~~~~ 343 (364)
++|++..+ ....+. ...+.+..+.+++++..|+....+ +.|+.||+.+++
T Consensus 353 ~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 353 EQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 99998744 344443 244567888889988877665444 789999987654
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.60 E-value=5.3e-14 Score=119.70 Aligned_cols=174 Identities=13% Similarity=0.041 Sum_probs=130.0
Q ss_pred eeecccCCCc-cEEEEEeCCeEEEEECCCCc---------eeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec
Q 040533 47 YSNMMDWGRN-NILAIALGLELYLWKQENGE---------VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA 116 (364)
Q Consensus 47 ~~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 116 (364)
.++.+++++. ++++++....+.+|+++..+ ....... .+.. |+.++| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 4788888885 57777777788889976543 2222222 3556 999999 99999999 8899999999
Q ss_pred CCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCe
Q 040533 117 ETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNL 196 (364)
Q Consensus 117 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 196 (364)
.+.........|..++.++.+.+ . .+++++.||.|.+||+..+.. .. +...|++++|+|+| ++.|..||.
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~-~~----~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKST-KQ----LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCE-EE----EEESEEEEEECSSE--EEEEETTSC
T ss_pred hhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcc-cc----ccCCceEEEEcCCc--eEEEEcCCc
Confidence 88776666777888899888765 3 288899999999999986653 21 45689999999999 678899999
Q ss_pred EEEEeCCCCCCCcceEEe------c---ccccceeEEEEccCCCcEEEe
Q 040533 197 VHVWDHSKMSSSKCLHRF------R---DHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~------~---~~~~~v~~~~~~~~~~~~~~~ 236 (364)
+++|+....... ....+ . +|...|.++.|.+++.++++-
T Consensus 184 i~~~~~~~~~~~-~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 184 FQSFAWRNGEME-KQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEEEETTEEE-EEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEEcCCCcccc-ccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 999986543210 02223 2 367889999999988655553
No 213
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.60 E-value=1.7e-12 Score=108.65 Aligned_cols=227 Identities=10% Similarity=0.103 Sum_probs=154.7
Q ss_pred CCCCCceEEEEcCCCC-EEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc
Q 040533 85 GEDDFPTSISWSQDAK-TLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN 163 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 163 (364)
..........|+|+++ +++++..++.|..|+. +++ ...+..+...+..+++++ +++++++...++.|.+|+.. +.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SC
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CC
Confidence 3455677899999998 5666767889999997 454 345555667789999999 88877766666789999975 33
Q ss_pred ceeeeeecc----cCcEEEEEEcCCCCEEEE----EeC-------------CCeEEEEeCCCCCCCcceEEeccccccee
Q 040533 164 NVTSRINAH----TAEVCGLKWSNEGNLLAS----GGD-------------DNLVHVWDHSKMSSSKCLHRFRDHRAAVK 222 (364)
Q Consensus 164 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 222 (364)
........ ...++.++++++|++.++ |.. .+.|..+|...+.. ..+. ......
T Consensus 118 -~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~----~~~~-~~~~p~ 191 (305)
T 3dr2_A 118 -AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL----QRMA-DLDHPN 191 (305)
T ss_dssp -EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC----EEEE-EESSEE
T ss_pred -EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE----EEEe-cCCCCc
Confidence 12211111 134678999999998876 332 25677787644332 2222 334567
Q ss_pred EEEEccCCCcEEEeecCCC-----CCeEEEEECCCCeEE--EEEe--cCCCeEEEEEcCCccceeeeccCCccCCCCeEE
Q 040533 223 ALAWCPYQFNVLASGGGTQ-----DGCIKIWNVQKGTCI--HSVD--TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLC 293 (364)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~~-----d~~i~i~d~~~~~~~--~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 293 (364)
.++|+|+++.++++.. . .+.|.+|++..+... ..+. .......++++++|++.++. .+.|.
T Consensus 192 gl~~spdg~~lyv~~~--~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~--------~~gv~ 261 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQT--PEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS--------GTGVC 261 (305)
T ss_dssp EEEECTTSSEEEEEEC--CC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC--------SSEEE
T ss_pred ceEEcCCCCEEEEEec--CCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec--------CCcEE
Confidence 8999999976776653 2 278999998765411 1111 12345678999999955543 34599
Q ss_pred EeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCc
Q 040533 294 LWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADET 333 (364)
Q Consensus 294 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 333 (364)
+|+. +++.+..+..+. .+.+++|+++++.|+.++.++.
T Consensus 262 ~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 262 VFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp EECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred EECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 9997 577777766554 5889999999988888877643
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.59 E-value=7.1e-14 Score=118.93 Aligned_cols=173 Identities=6% Similarity=0.042 Sum_probs=128.8
Q ss_pred cEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc---------eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 040533 131 RVATASWNHWNGHILTSGSQDKSIINHDVRVSNN---------VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD 201 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 201 (364)
+++.+++++ ...++++|+.++ +.+|++..... .......+.. |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999 888999999885 55698764331 1112234566 999999 88999998 789999999
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeec
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
++.... ......+...+.++.+.+. .+++. . .||.|.+||+.++.... ....|.+++|+|+| ++.|.
T Consensus 113 v~sl~~---~~~~~~~~~~v~~i~~~~p--~~av~-~--~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 113 LEELSE---FRTVTSFEKPVFQLKNVNN--TLVIL-N--SVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp SSSTTC---EEEEEECSSCEEEEEECSS--EEEEE-E--TTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEE
T ss_pred chhhhc---cCccceeecceeeEEecCC--CEEEE-E--CCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEE
Confidence 987654 3334455667888777654 34443 3 69999999999887654 34579999999999 34443
Q ss_pred cCCccCCCCeEEEeeCCCCce--eeec------c---ccccceeEEeecCCCCEEEEE
Q 040533 282 GFSSSGDGQKLCLWKYPHMTK--WGEL------Q---HQTSRILELSQSPDGLTVVSA 328 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~--~~~~------~---~~~~~i~~i~~~~~~~~l~~~ 328 (364)
. ||.+++|+....+. ..++ . +|...|.+|.|.+++.++++-
T Consensus 180 ~------dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 180 K------DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp T------TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred c------CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 3 99999998877664 4444 2 367889999999999988873
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.59 E-value=2.9e-12 Score=106.70 Aligned_cols=224 Identities=11% Similarity=0.056 Sum_probs=150.7
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS 207 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 207 (364)
...-..+..|+|.++.++++...++.|..||..++.. ..+ .....+.+++++++++++++ . ++.|.+||..+...
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence 3445567899995566777777889999999886653 222 34567999999999995554 4 56799999765432
Q ss_pred CcceEEecc--cccceeEEEEccCCCcEEEeecC--------CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccce
Q 040533 208 SKCLHRFRD--HRAAVKALAWCPYQFNVLASGGG--------TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEI 277 (364)
Q Consensus 208 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~g--------~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l 277 (364)
+.+..... ....+..++++|+|..++.+... ...+.|..++.. ++.............++|+|+++.+
T Consensus 86 -~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 86 -VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp -EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEE
T ss_pred -EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEE
Confidence 11211111 12357889999999644433220 012345555543 4443333334557899999999877
Q ss_pred eeeccCCccCCCCeEEEeeC--CCCce-----eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 278 LSGHGFSSSGDGQKLCLWKY--PHMTK-----WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~--~~~~~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
+... ..++.|.+|++ .++.. ...+..+......++++++|++.++...++.|..||..+++.+..+..
T Consensus 164 yv~~-----~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 164 YYID-----SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp EEEE-----GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred EEec-----CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 6543 22688999987 44442 223333445678999999998888877788999999988888888877
Q ss_pred cCCceeeeeec-cC
Q 040533 351 HLDGLLSLKVS-PI 363 (364)
Q Consensus 351 ~~~~v~~~~~s-p~ 363 (364)
+...+++++|+ |.
T Consensus 239 p~~~~t~~~f~g~d 252 (297)
T 3g4e_A 239 PVDKTTSCCFGGKN 252 (297)
T ss_dssp SSSBEEEEEEESGG
T ss_pred CCCCceEEEEeCCC
Confidence 77789999998 53
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.55 E-value=2.3e-12 Score=111.22 Aligned_cols=246 Identities=9% Similarity=0.009 Sum_probs=169.3
Q ss_pred cccCCCcc--EEEEE----------eCCeEEEEECCCCceeeeeeecCC-----CCCceEEEEcCCCCEEEEEec--CCc
Q 040533 50 MMDWGRNN--ILAIA----------LGLELYLWKQENGEVQKLLKVTGE-----DDFPTSISWSQDAKTLAVGYM--ASK 110 (364)
Q Consensus 50 ~~~~~~~~--~~~~~----------~~~~i~iw~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~--dg~ 110 (364)
.+.++|++ ++++. .++.|.++|..+++......+.+. ......+.|+|||++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 56677753 44433 357899999999988766665311 235678999999999998864 578
Q ss_pred EEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee----eecccCcE-EEEEEcCCC
Q 040533 111 LQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR----INAHTAEV-CGLKWSNEG 185 (364)
Q Consensus 111 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~v-~~~~~~~~~ 185 (364)
|.+.|+.+++.+..+.... . ....|.....+++.+.||.+.+.+..+++. ... +.....++ ..+.+.+++
T Consensus 202 VsVID~~t~kvv~~I~v~g-~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v-~~~~~~~~~v~~~p~~~~~~~~~dg 276 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPD-C---YHIFPASPTVFYMNCRDGSLARVDFADGET-KVTNTEVFHTEDELLINHPAFSLRS 276 (426)
T ss_dssp EEEEETTTTEEEEEEECCS-E---EEEEEEETTEEEEEETTSSEEEEECCTTCC-EEEECCCCSCTTSCBCSCCEECTTT
T ss_pred EEEEECCCCeEEEEEEcCC-c---eeeccCCCcEEEEEcCCCCEEEEECCCCcE-EEEeeeeeccCCCceeeEeeecCCC
Confidence 9999999999988877422 1 233442446667777888888888743332 211 11111121 235678888
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCcceEEec----------ccccceeEEEEccCCCcEEEeecC----C---CCCeEEEE
Q 040533 186 NLLASGGDDNLVHVWDHSKMSSSKCLHRFR----------DHRAAVKALAWCPYQFNVLASGGG----T---QDGCIKIW 248 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~g----~---~d~~i~i~ 248 (364)
..++.....+.|.+.|+..... ..+..+. ........++++|++..++++... + .++.|.++
T Consensus 277 ~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVI 355 (426)
T 3c75_H 277 GRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVL 355 (426)
T ss_dssp CEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred CEEEEEeCCCcEEEEeccCCce-EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEE
Confidence 8877778889999999754321 1111110 011222347899998888876420 0 14689999
Q ss_pred ECCCCeEEEEEecCCCeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeec
Q 040533 249 NVQKGTCIHSVDTKAQICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 249 d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
|+.+.+.+..+........+.|+|+|+ .+++.. ..++.|.++|..+++.+.++
T Consensus 356 D~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n-----~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 356 NAETGERINKIELGHEIDSINVSQDAEPLLYALS-----AGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEE-----TTTTEEEEEETTTCCEEEEE
T ss_pred ECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEc-----CCCCeEEEEECCCCCEEEEe
Confidence 999999999998777899999999999 777765 23899999999999999886
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.54 E-value=1.6e-11 Score=106.77 Aligned_cols=231 Identities=8% Similarity=-0.003 Sum_probs=151.8
Q ss_pred eecccCCCcc-EEEEE-eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC--cEEEEecCCcceee
Q 040533 48 SNMMDWGRNN-ILAIA-LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS--KLQLWDAETSKLIR 123 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iw~~~~~~~~~ 123 (364)
...++|++++ ++++. .++.|++||..++........ ..... ++|+|+++.|+++..++ .|.+++...+....
T Consensus 133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~---~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG---FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET---CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc---CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4567777765 44444 347999999998876554432 33344 99999999998888766 79999887665544
Q ss_pred ee----ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee---eecccCcE--EEEEEcCC-CCEEEEEeC
Q 040533 124 NL----EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR---INAHTAEV--CGLKWSNE-GNLLASGGD 193 (364)
Q Consensus 124 ~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~~v--~~~~~~~~-~~~l~~~~~ 193 (364)
.+ ......+.+++++| ++..|+.+..++.|+.||..++...... ..++...- ..++|+|+ +.++++-..
T Consensus 209 ~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 44 22456678899999 5555555777889999998766522110 11122211 38999995 556666667
Q ss_pred CCeEEEEeCCCCCCCcceEEecccc---------------cceeEEEEccCCCcEEEeecCC-CCCeEEEEECCCCeEEE
Q 040533 194 DNLVHVWDHSKMSSSKCLHRFRDHR---------------AAVKALAWCPYQFNVLASGGGT-QDGCIKIWNVQKGTCIH 257 (364)
Q Consensus 194 d~~i~iwd~~~~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~~~~~~~g~-~d~~i~i~d~~~~~~~~ 257 (364)
.+.|+.|+.... +..+.++. .....++++|++. ++++. + .++.|+.|++.++....
T Consensus 288 ~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad--~~~~~~I~~~~~~~G~v~~ 359 (409)
T 3hrp_A 288 LSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVD--GFKGYCLRKLDILDGYVST 359 (409)
T ss_dssp TTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEE--TTTTCEEEEEETTTTEEEE
T ss_pred CCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEe--CCCCCEEEEEECCCCEEEE
Confidence 789999986532 22222221 3467899999986 55553 2 47899999988887544
Q ss_pred EEec---------------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeC
Q 040533 258 SVDT---------------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKY 297 (364)
Q Consensus 258 ~~~~---------------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~ 297 (364)
.... -.....+++++++.++++-.. ++.|+.+++
T Consensus 360 ~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~------n~~Ir~i~~ 408 (409)
T 3hrp_A 360 VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW------GKAIRKYAV 408 (409)
T ss_dssp EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST------TCEEEEEEE
T ss_pred EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC------CCeEEEEEe
Confidence 3332 134788999998776665533 667776654
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.53 E-value=2.1e-12 Score=109.62 Aligned_cols=273 Identities=10% Similarity=-0.034 Sum_probs=177.2
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe----------cCCcEEEEecCCcceeeeeecC-------
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY----------MASKLQLWDAETSKLIRNLEGH------- 128 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~------- 128 (364)
.|.++|..+++....+.. +. .+ .+.++||+++++++. .++.|.+||+.+++.+.++...
T Consensus 47 ~vsvID~~t~~v~~~i~v-G~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLG-AF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEETTTTEEEEEEEE-CT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred eEEEEECCCCeEEEEEeC-CC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence 899999999998776665 32 23 799999999998886 3678999999999999988643
Q ss_pred CCcEEEEEeecCCCCEEEEeeC--CCcEEE--EEcccCcceeeeeecccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQ--DKSIIN--HDVRVSNNVTSRINAHTAEVCGLKWSNEG-NLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~--dg~i~~--~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~ 203 (364)
......++++| ++++++++.. +..+.+ +|+.+ ...+.. .+. ....|++ ..+++.+.|+.+.+.|+.
T Consensus 123 g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 123 GPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp SCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred CCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECc
Confidence 12356789999 8988888764 456888 89876 222211 111 1123433 345556678888888876
Q ss_pred CCCC--CcceE----EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe--EEEEEecC-----------CC
Q 040533 204 KMSS--SKCLH----RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT--CIHSVDTK-----------AQ 264 (364)
Q Consensus 204 ~~~~--~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~-----------~~ 264 (364)
.... .+... .+.....+. . .+++..++.+. . +.+.+.|+.+.. .+..+... ..
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs---~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV---A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB---S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred cccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc---C-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 5110 01110 011112222 3 55555555543 5 899999986542 23322211 11
Q ss_pred eEEEEEcCCccceeeecc-C---CccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCE-EEEEe-CCCcEEEEE
Q 040533 265 ICGLEWNRHHKEILSGHG-F---SSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLT-VVSAA-ADETLRFWE 338 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~-~---~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~-~dg~i~vw~ 338 (364)
...+.++|+++.++++.. . .... ++.+.++|+.+.+.+..+.... ....++|+|||++ +++.. .++.|.++|
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~-~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAA-AENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSC-EEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred ceeeEEcCCCCEEEEEeccccCccccc-CCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 122789999988886531 0 0000 2345699999999999887554 5789999999984 55566 599999999
Q ss_pred eeCCCCCcceeccCCceeeeeecc
Q 040533 339 AFGPSGSGDFVSHLDGLLSLKVSP 362 (364)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~~~~sp 362 (364)
+.+.+.+..+... ....++++.+
T Consensus 344 ~~t~kvv~~I~vg-~~P~~i~~~~ 366 (368)
T 1mda_H 344 AASDQDQSSVELD-KGPESLSVQN 366 (368)
T ss_dssp SSSCEEEEECCCC-SCCCEEECCC
T ss_pred CCCCcEEEEEECC-CCCCEEEeec
Confidence 9999988877643 3455666654
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.52 E-value=1.2e-11 Score=104.30 Aligned_cols=219 Identities=8% Similarity=-0.040 Sum_probs=144.2
Q ss_pred cEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcc
Q 040533 131 RVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKC 210 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 210 (364)
-.....|+|.++.++++...++.|..||..++.. ..+ .....+.+++|+++++++++. .+ .|.+||..++.. ..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~-~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--TVH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL-TL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE-EE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--EEE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE-EE
Confidence 3467789994466777777888999999876542 222 234679999999999876654 44 499999765432 11
Q ss_pred eEEecc--cccceeEEEEccCCCcEEEeecC---CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCc
Q 040533 211 LHRFRD--HRAAVKALAWCPYQFNVLASGGG---TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSS 285 (364)
Q Consensus 211 ~~~~~~--~~~~v~~~~~~~~~~~~~~~~~g---~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 285 (364)
+..... ....+..++++|+|..++.+.+. ...+.|..++ +++.............++|+|+++.++.+.
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~---- 197 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVD---- 197 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEE----
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEE----
Confidence 111110 12357899999999644433210 0125677777 565443333334577899999998776543
Q ss_pred cCCCCeEEEeeCC--CC-ce-----eeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceee
Q 040533 286 SGDGQKLCLWKYP--HM-TK-----WGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLS 357 (364)
Q Consensus 286 ~~~~~~i~i~d~~--~~-~~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~ 357 (364)
..++.|.+|++. ++ .. ...+......+..++++++|.+.++...++.|.+|+. +++.+..+..+...+++
T Consensus 198 -~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~ 275 (326)
T 2ghs_A 198 -TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTC 275 (326)
T ss_dssp -TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEE
T ss_pred -CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEE
Confidence 226899999986 55 31 2223333456788999999988777767789999998 55655666666667999
Q ss_pred eeec-cC
Q 040533 358 LKVS-PI 363 (364)
Q Consensus 358 ~~~s-p~ 363 (364)
++|+ |.
T Consensus 276 ~af~g~d 282 (326)
T 2ghs_A 276 PAFIGPD 282 (326)
T ss_dssp EEEESTT
T ss_pred EEEecCC
Confidence 9997 63
No 220
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.50 E-value=8e-11 Score=100.58 Aligned_cols=253 Identities=15% Similarity=0.153 Sum_probs=160.0
Q ss_pred eEEEEECCC-----CceeeeeeecCCCCCceEEEE-----------c--CCCCEEEEEe-cCCcEEEEecCCc----cee
Q 040533 66 ELYLWKQEN-----GEVQKLLKVTGEDDFPTSISW-----------S--QDAKTLAVGY-MASKLQLWDAETS----KLI 122 (364)
Q Consensus 66 ~i~iw~~~~-----~~~~~~~~~~~~~~~v~~~~~-----------s--~~~~~l~~~~-~dg~i~iw~~~~~----~~~ 122 (364)
.|.+.|+.. ++......+..-.+....+-| + +++++|++.+ .+++|.|+|+.+. +..
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 455556554 455554444433334444445 6 7888777655 6788999999755 555
Q ss_pred eeee-------cCCCcEEEEEeecCCCCEEEEeeCC------CcEEEEEcccCcceeeeeecc--c-CcEEEEEEcCCCC
Q 040533 123 RNLE-------GHDKRVATASWNHWNGHILTSGSQD------KSIINHDVRVSNNVTSRINAH--T-AEVCGLKWSNEGN 186 (364)
Q Consensus 123 ~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~--~-~~v~~~~~~~~~~ 186 (364)
++++ .....-..+...| ++ +++++..+ |.|.++|..+.+. +..+... . .--..+.|+|+++
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~ 200 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEP-LGKWEIDRGDQYLAYDFWWNLPNE 200 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCE-EEECCSBCTTCCCCCCEEEETTTT
T ss_pred eeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeE-EEEEccCCCCccccceEEECCCCC
Confidence 5552 1112455677788 77 77766555 7899999987764 4444321 1 1234578899999
Q ss_pred EEEEEe-------------------CCCeEEEEeCCCCCCCcceEEeccc--ccceeEEEE--ccCCCcEEEeec---CC
Q 040533 187 LLASGG-------------------DDNLVHVWDHSKMSSSKCLHRFRDH--RAAVKALAW--CPYQFNVLASGG---GT 240 (364)
Q Consensus 187 ~l~~~~-------------------~d~~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~~~~~~~~~---g~ 240 (364)
.+++.. .+.+|.+||+.+. +.+.++... ......+.| +|++++.++++. ..
T Consensus 201 ~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~---k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~ 277 (462)
T 2ece_A 201 VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR---KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKD 277 (462)
T ss_dssp EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT---EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTT
T ss_pred EEEEccCcCccccccccchhhhhhccCCEEEEEECCCC---cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccC
Confidence 888874 3689999998764 335554431 123445555 999987776541 00
Q ss_pred CCCeEEEEECCCCeE--EEEE--ec-----------------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC
Q 040533 241 QDGCIKIWNVQKGTC--IHSV--DT-----------------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~--~~~~--~~-----------------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
.+++|.+|....++. .+.+ .. ......+.++++|++|+++.. ..+.|.+||+..
T Consensus 278 Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr-----g~d~VavfdV~d 352 (462)
T 2ece_A 278 LSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW-----GIGEVRQYDISN 352 (462)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET-----TTTEEEEEECSS
T ss_pred CCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC-----CCCEEEEEEecC
Confidence 356787776655432 1211 11 234678999999999998764 378999999853
Q ss_pred ---Cceeeeccccc--------------cceeEEeecCCCCEEEEEe
Q 040533 300 ---MTKWGELQHQT--------------SRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 300 ---~~~~~~~~~~~--------------~~i~~i~~~~~~~~l~~~~ 329 (364)
.+.+..+.... +....++++|||++|+++.
T Consensus 353 ~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 353 PFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 23444433220 1358899999999999988
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.49 E-value=2.1e-11 Score=101.93 Aligned_cols=218 Identities=11% Similarity=0.120 Sum_probs=142.9
Q ss_pred eecccCCCc-c-EEEEE-eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 48 SNMMDWGRN-N-ILAIA-LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 48 ~~~~~~~~~-~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
.....|+++ + ++.+. .++.|..|+. +++.. .+ ..+...+..++++++|+++++...++.|.+|+.+ ++....
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~~--~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-VL--LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL 121 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-EE--EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-EE--eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE
Confidence 455777775 3 44444 4689999998 45432 22 2345678999999999977665556789999976 543222
Q ss_pred eecC----CCcEEEEEeecCCCCEEEE----eeC-------------CCcEEEEEcccCcceeeeeecccCcEEEEEEcC
Q 040533 125 LEGH----DKRVATASWNHWNGHILTS----GSQ-------------DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN 183 (364)
Q Consensus 125 ~~~~----~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 183 (364)
.... ...+..+++.| +++++++ |.. .+.|..+|..++.. .. +. .....+.++|+|
T Consensus 122 ~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~-~~-~~-~~~~p~gl~~sp 197 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-QR-MA-DLDHPNGLAFSP 197 (305)
T ss_dssp ECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-EE-EE-EESSEEEEEECT
T ss_pred EeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE-EE-Ee-cCCCCcceEEcC
Confidence 1111 13466799999 8988886 332 24577777655542 22 22 345678899999
Q ss_pred CCCEEEEEeCC------CeEEEEeCCCCCCCcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE
Q 040533 184 EGNLLASGGDD------NLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI 256 (364)
Q Consensus 184 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 256 (364)
+++.|+.+... +.|.+||+..... .....+ .........++++++|. +.++. .+ .|.+|+. +++.+
T Consensus 198 dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~---~~-gv~~~~~-~g~~~ 270 (305)
T 3dr2_A 198 DEQTLYVSQTPEQGHGSVEITAFAWRDGAL-HDRRHFASVPDGLPDGFCVDRGGW-LWSSS---GT-GVCVFDS-DGQLL 270 (305)
T ss_dssp TSSEEEEEECCC---CCCEEEEEEEETTEE-EEEEEEECCSSSCCCSEEECTTSC-EEECC---SS-EEEEECT-TSCEE
T ss_pred CCCEEEEEecCCcCCCCCEEEEEEecCCCc-cCCeEEEECCCCCCCeEEECCCCC-EEEec---CC-cEEEECC-CCCEE
Confidence 99988777665 6899999764320 001111 11234456789999985 55543 24 4999998 57777
Q ss_pred EEEecCCCeEEEEEcCCccceeeec
Q 040533 257 HSVDTKAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 257 ~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (364)
..+..+..+..++|+++++.|+.+.
T Consensus 271 ~~~~~~~~~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 271 GHIPTPGTASNCTFDQAQQRLFITG 295 (305)
T ss_dssp EEEECSSCCCEEEECTTSCEEEEEE
T ss_pred EEEECCCceeEEEEeCCCCEEEEEc
Confidence 7777666789999999988777764
No 222
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.48 E-value=4.6e-10 Score=91.84 Aligned_cols=249 Identities=7% Similarity=-0.022 Sum_probs=158.6
Q ss_pred EEEEeCCeEEEEECCCCcee-----eeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcceeeeeecCCCcE
Q 040533 59 LAIALGLELYLWKQENGEVQ-----KLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKLIRNLEGHDKRV 132 (364)
Q Consensus 59 ~~~~~~~~i~iw~~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v 132 (364)
|..+..+.|+.+++...... ..... ....+..++|++++..|..+. .++.|..++.........+.......
T Consensus 4 l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~--~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHI--PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEEEEEEEEESSSCBCGGGCEEEEEE--EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEcCCeEEEEEecCcccccccceeeecC--CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 34444568888988765432 11211 123578999999766665554 56789999987655433333333567
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCCCc
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD---DNLVHVWDHSKMSSSK 209 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~ 209 (364)
..++++|.++.++++-...+.|.++++..... .............++++|++..|+.+.. .+.|..+++... .
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~-- 157 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-N-- 157 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-C--
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-C--
Confidence 89999983345555555677899999874332 2222222245789999997666655554 368888887532 1
Q ss_pred ceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCC
Q 040533 210 CLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGD 288 (364)
Q Consensus 210 ~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 288 (364)
...+ .........++++|++..++++.. ..+.|..+|.........+........++.. +..++.+. ..
T Consensus 158 -~~~~~~~~~~~P~gia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~-----~~ 227 (267)
T 1npe_A 158 -RRILAQDNLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTD-----WK 227 (267)
T ss_dssp -CEEEECTTCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEE-----TT
T ss_pred -cEEEEECCCCCCcEEEEcCCCCEEEEEEC--CCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEE-----CC
Confidence 1222 122345788999998878888765 6789999999765444444443445667664 34444432 22
Q ss_pred CCeEEEeeCCCCceeeeccccc-cceeEEeecCCCC
Q 040533 289 GQKLCLWKYPHMTKWGELQHQT-SRILELSQSPDGL 323 (364)
Q Consensus 289 ~~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~ 323 (364)
.+.|..+|..+++.+..+.... .....+++.|++.
T Consensus 228 ~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 228 TNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 6899999999998888876433 2467788888763
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.48 E-value=1.4e-11 Score=114.03 Aligned_cols=284 Identities=11% Similarity=0.027 Sum_probs=182.4
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCC---------CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDD---------FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~---------~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
+.+++++.++.|+-+|..+++..=......... ....+++ ++..|++++.|+.|..+|..+|+.+..+.
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 346666677899999999998654433321100 0112333 45688888899999999999999988877
Q ss_pred cC-C----CcEEE-EEeecCCCCEEEEeeC------CCcEEEEEcccCcceeeeeeccc---------------------
Q 040533 127 GH-D----KRVAT-ASWNHWNGHILTSGSQ------DKSIINHDVRVSNNVTSRINAHT--------------------- 173 (364)
Q Consensus 127 ~~-~----~~v~~-~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~--------------------- 173 (364)
.. . ..+.+ ... .+..++.++. +|.|+.+|..+++..........
T Consensus 156 ~~~~~~~~~~~~~~p~v---~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 156 TFEGQKGSLTITGAPRV---FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp TTTTCCSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred CCcCcCcCcccccCcEE---ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 54 2 11211 111 2344555543 68999999998875433221110
Q ss_pred ----------CcEEEEEEcCCCCEEEEEeCCC-------------------eEEEEeCCCCCCCcceEEecc--cc----
Q 040533 174 ----------AEVCGLKWSNEGNLLASGGDDN-------------------LVHVWDHSKMSSSKCLHRFRD--HR---- 218 (364)
Q Consensus 174 ----------~~v~~~~~~~~~~~l~~~~~d~-------------------~i~iwd~~~~~~~~~~~~~~~--~~---- 218 (364)
.....++++|++..++.+..++ .|..+|.++++. +-.++. |.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~---~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY---KWHYQETPGDNWDY 309 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE---EEEEESSTTCCSCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE---EEEEecCCCccccc
Confidence 0113577888888888887664 488999876543 433332 21
Q ss_pred ---cceeEEEEccCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecCC------------Ce----------------
Q 040533 219 ---AAVKALAWCPYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA------------QI---------------- 265 (364)
Q Consensus 219 ---~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~------------~v---------------- 265 (364)
....-+....+|+ .+++.+. .+|.++++|..+|+.+..+.... ++
T Consensus 310 ~~~~~p~l~~~~~dG~~~~~l~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P 387 (677)
T 1kb0_A 310 TSTQPMILADIKIAGKPRKVILHAP--KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVP 387 (677)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSS
T ss_pred ccCCCcEEEecccCCcEeeEEEEEC--CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECc
Confidence 1112222333553 4555554 89999999999999987765321 01
Q ss_pred --------EEEEEcCCccceeeeccC-----------Ccc--------------------------CCCCeEEEeeCCCC
Q 040533 266 --------CGLEWNRHHKEILSGHGF-----------SSS--------------------------GDGQKLCLWKYPHM 300 (364)
Q Consensus 266 --------~~~~~~~~~~~l~~~~~~-----------~~~--------------------------~~~~~i~i~d~~~~ 300 (364)
..++++|++..+++.... ..+ ...+.|..||+.++
T Consensus 388 ~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG 467 (677)
T 1kb0_A 388 GPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ 467 (677)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT
T ss_pred CcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC
Confidence 156888888877764320 000 01378999999999
Q ss_pred ceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 301 TKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 301 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
+.+.++.. ..++....+..++..++.++.||.+++||..+++.+..+..
T Consensus 468 ~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 468 KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 98887763 33445556667888899999999999999999999887763
No 224
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.46 E-value=2.6e-11 Score=113.02 Aligned_cols=256 Identities=14% Similarity=0.119 Sum_probs=163.5
Q ss_pred cEEeeCCCCCC--CcceeecccCCCcc-EEEEEe--C----CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEE
Q 040533 33 EARILDAPNLR--NDYYSNMMDWGRNN-ILAIAL--G----LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLA 103 (364)
Q Consensus 33 ~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~--~----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 103 (364)
.+.+++...+. ..+.+..++|||++ .++.+. . ..|++||+.+++.... .+.. .....++|+ |++.|+
T Consensus 114 ~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~--~k~~~~~Ws-Dg~~l~ 189 (693)
T 3iuj_A 114 AEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKD--VKFSGISWL-GNEGFF 189 (693)
T ss_dssp CEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEE--EESCCCEEE-TTTEEE
T ss_pred cEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCC--ceeccEEEe-CCCEEE
Confidence 34455543322 22346677899975 555432 1 4799999999986443 2211 113567899 999999
Q ss_pred EEecCC-------------cEEEEecCCcce----eeeeec-CCCcEEEEEeecCCCCEEEEeeC----CCcEEEEEccc
Q 040533 104 VGYMAS-------------KLQLWDAETSKL----IRNLEG-HDKRVATASWNHWNGHILTSGSQ----DKSIINHDVRV 161 (364)
Q Consensus 104 ~~~~dg-------------~i~iw~~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~ 161 (364)
.++.+. .|++|++.++.. +..... |...+..+.|+| ++++|+.... +..|+++|+.+
T Consensus 190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQ 268 (693)
T ss_dssp EEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTS
T ss_pred EEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCC
Confidence 988774 399999877642 222233 445578899999 8887755432 24899999877
Q ss_pred CcceeeeeecccCcEEEEEEcCCCCEEEEEe-CC---CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEee
Q 040533 162 SNNVTSRINAHTAEVCGLKWSNEGNLLASGG-DD---NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
+......+..+....... |++++..|+..+ .+ +.|..+|+..... .....+..+...+. .|++++..++++.
T Consensus 269 ~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~--~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 269 ENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-AHWRDLIPERQQVL--TVHSGSGYLFAEY 344 (693)
T ss_dssp TTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCE--EEEEETTEEEEEE
T ss_pred CCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-cccEEEecCCCCEE--EEEEECCEEEEEE
Confidence 643344555555555554 566666555444 33 6799999876532 11344555555554 8889888777765
Q ss_pred cCCCCC--eEEEEECCCCeEEEEEec--CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce
Q 040533 238 GGTQDG--CIKIWNVQKGTCIHSVDT--KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK 302 (364)
Q Consensus 238 ~g~~d~--~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~ 302 (364)
. .++ .|++||+..+ ....+.. ...+..+.+++++..++.... +-..-+.++.||+.+++.
T Consensus 345 ~--~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~s--s~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 345 M--VDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFE--NYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp E--ETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEE--CSSSCCEEEEECTTTCCE
T ss_pred E--ECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEec--CCCCCCEEEEEECCCCeE
Confidence 4 444 6899998754 4455543 345777888888888776532 112347899999887653
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.45 E-value=4.5e-10 Score=96.81 Aligned_cols=268 Identities=7% Similarity=-0.005 Sum_probs=165.7
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCC-------CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGE-------DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 128 (364)
+.+++++.++.|+.+|.++++..-....... ...+.+ ....++..+++++.++.|..+|.++|+.+......
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 4566777788999999999987544443221 122222 12224567888888999999999999988776644
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcE------EEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEV------CGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
......... .+..++.++.++.|..+|..+++..... ... .++ ...... +..++.++.++.+..+|.
T Consensus 133 ~~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~-~~~-~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 133 GEALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTV-NLD-MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp SCCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEE-ECC-C-----CCCCCCEEE--TTEEEECCTTTEEEEEET
T ss_pred CceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEE-eCC-CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEEC
Confidence 322222223 3457788888999999999887753332 211 111 111121 346778888999999998
Q ss_pred CCCCCCcceEEeccccc--c--------e-eEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEc
Q 040533 203 SKMSSSKCLHRFRDHRA--A--------V-KALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWN 271 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~--~--------v-~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~ 271 (364)
.+++. +........ . + ...... +..+++. + .++.+..+|..+++.+....... ...+...
T Consensus 206 ~tG~~---~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~v~~~-~--~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~ 276 (376)
T 3q7m_A 206 EQGQM---IWQQRISQATGSTEIDRLSDVDTTPVVV--NGVVFAL-A--YNGNLTALDLRSGQIMWKRELGS-VNDFIVD 276 (376)
T ss_dssp TTCCE---EEEEECCC-----------CCCCCCEEE--TTEEEEE-C--TTSCEEEEETTTCCEEEEECCCC-EEEEEEE
T ss_pred CCCcE---EEEEecccCCCCcccccccccCCCcEEE--CCEEEEE-e--cCcEEEEEECCCCcEEeeccCCC-CCCceEE
Confidence 76532 333221100 0 1 111111 2244443 2 68999999999999887765433 3344433
Q ss_pred CCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc-cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 272 RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH-QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
+..++++.. ++.+..+|..+++.+..... ....+..... .+..|+.++.+|.|.++|..+++.+.....
T Consensus 277 --~~~l~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 277 --GNRIYLVDQ------NDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp --TTEEEEEET------TCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred --CCEEEEEcC------CCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 344444432 78999999999998776652 2222333333 346788899999999999998887655543
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.44 E-value=6e-11 Score=100.86 Aligned_cols=236 Identities=11% Similarity=-0.002 Sum_probs=149.0
Q ss_pred CCceEEEEcCCCCEEEEEe--cCCcEEEEecCCcceeeee-------ecCCCcEEEEEeecCCCCEEEEeeC-----CCc
Q 040533 88 DFPTSISWSQDAKTLAVGY--MASKLQLWDAETSKLIRNL-------EGHDKRVATASWNHWNGHILTSGSQ-----DKS 153 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~ 153 (364)
..+..++++|+|+.+++.. .++.++||.+.+++.. .+ ..+-..+..+++++ +++++++-.. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCCe
Confidence 5789999999999888864 2343555555455432 22 12456799999998 7776665433 578
Q ss_pred EEEEEcccCcceeeeeec------ccCcEEEEEEcCCCCEE-EEEe---CCCeEEEEeCCCCCCCcceEEeccc------
Q 040533 154 IINHDVRVSNNVTSRINA------HTAEVCGLKWSNEGNLL-ASGG---DDNLVHVWDHSKMSSSKCLHRFRDH------ 217 (364)
Q Consensus 154 i~~~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l-~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~------ 217 (364)
|.+||+.+++. ...+.. +...+..+++++++..+ ++.. .++.|.+||+.+... ...+..|
T Consensus 95 i~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~---~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 95 LVAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA---ARVLQGYPGIAPE 170 (343)
T ss_dssp EEEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE---EEECTTCTTTSCC
T ss_pred EEEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE---EEEecCCCccccc
Confidence 99999987653 332321 22356889999865444 4444 578999999865432 2211110
Q ss_pred -----------------------ccceeEEEEccCCCcEEEeecCCCCCeEEEEECC---CCe--------EEEEEecCC
Q 040533 218 -----------------------RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQ---KGT--------CIHSVDTKA 263 (364)
Q Consensus 218 -----------------------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~---~~~--------~~~~~~~~~ 263 (364)
...+..++|+|+++.++++.. ....+..++.. .+. .+.......
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g 248 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM--HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP 248 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES--SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC
T ss_pred ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC--CCCeEEEEEHHHhcCCCCChhhhhcceEecccCC
Confidence 123578999999977776653 34466666532 110 011222234
Q ss_pred CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc-cccceeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 264 QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH-QTSRILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
....++++++|...++... ++.|.+||..+++....... +...+.+++|.++|.++++.+..+.+.+|
T Consensus 249 ~pdgia~d~~G~l~va~~~------~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 249 ICDGISIDKDHNIYVGDLA------HSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp SCSCEEECTTCCEEEEEGG------GTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred CCceEEECCCCCEEEEccC------CCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 5678999999987777644 78999999855654332222 24568899999999888887755554433
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.44 E-value=7.4e-11 Score=109.12 Aligned_cols=274 Identities=12% Similarity=0.062 Sum_probs=175.6
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeec-CCC--CCce-EEEEcCCCCEEEEEec------CCcEEEEecCCcceeeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVT-GED--DFPT-SISWSQDAKTLAVGYM------ASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~-~~~--~~v~-~~~~s~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~ 125 (364)
+.+++++.++.|+.+|..+++..-..... ... ..+. .... .+..+++++. +|.|+.+|.++|+.+..+
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 45666777999999999999875444432 100 1111 1111 2345666553 689999999999988776
Q ss_pred ecCCCc--------------------------------EEEEEeecCCCCEEEEeeCCC-------------------cE
Q 040533 126 EGHDKR--------------------------------VATASWNHWNGHILTSGSQDK-------------------SI 154 (364)
Q Consensus 126 ~~~~~~--------------------------------v~~~~~~~~~~~~l~~~~~dg-------------------~i 154 (364)
...... ...++++| ++.+++.+..++ .|
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 542211 12467888 777888776654 49
Q ss_pred EEEEcccCcceeeeeec-cc-------CcEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCCCCcceEEecccc-----
Q 040533 155 INHDVRVSNNVTSRINA-HT-------AEVCGLKWSNEG---NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHR----- 218 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----- 218 (364)
..+|.++++.....-.. |. ....-+....+| ..++.++.+|.++++|.++++. +.......
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF---ISAKNFVPVNWAS 362 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEE
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE---eccccccccCccc
Confidence 99999988754332211 21 122223333467 6889999999999999877543 33222100
Q ss_pred ------cce------------------------eEEEEccCCCcEEEeec--------------C---------------
Q 040533 219 ------AAV------------------------KALAWCPYQFNVLASGG--------------G--------------- 239 (364)
Q Consensus 219 ------~~v------------------------~~~~~~~~~~~~~~~~~--------------g--------------- 239 (364)
.++ ..++++|+...+++... |
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 000 25678888755544321 0
Q ss_pred -----------CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc
Q 040533 240 -----------TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 240 -----------~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
...+.|..||+.+++.+..+....++....+...+..++.+.. ++.+++||..+++.+.++..
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~------dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTA------DGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECC------CCcEEEEECCCCceeeeeeC
Confidence 0127899999999999988887766666667777777777643 99999999999999998874
Q ss_pred cc-cceeEEeecCCCCEE-EEEeC----------------CCcEEEEEeeC
Q 040533 309 QT-SRILELSQSPDGLTV-VSAAA----------------DETLRFWEAFG 341 (364)
Q Consensus 309 ~~-~~i~~i~~~~~~~~l-~~~~~----------------dg~i~vw~~~~ 341 (364)
.. ....-+.|..+|+.+ ++.+. .+.+.+|.+..
T Consensus 517 ~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 517 GTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp SSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 43 222345666788644 43222 36788888764
No 228
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.43 E-value=1.5e-11 Score=104.44 Aligned_cols=253 Identities=8% Similarity=-0.058 Sum_probs=163.7
Q ss_pred cccCCCcc--EEEEE----------eCCeEEEEECCCCceeeeeeecCC-----CCCceEEEEcCCCCEEEEEec--CCc
Q 040533 50 MMDWGRNN--ILAIA----------LGLELYLWKQENGEVQKLLKVTGE-----DDFPTSISWSQDAKTLAVGYM--ASK 110 (364)
Q Consensus 50 ~~~~~~~~--~~~~~----------~~~~i~iw~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~--dg~ 110 (364)
.+.++|++ ++.+. .++.|.+||..+++......+.+. ......++++|||++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 46667753 44333 257899999999998777665411 135778999999999998874 457
Q ss_pred EEE--EecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEccc----Ccceee----eeecccCcEEEEE
Q 040533 111 LQL--WDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRV----SNNVTS----RINAHTAEVCGLK 180 (364)
Q Consensus 111 i~i--w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~----~~~~~~----~~~~~~~~v~~~~ 180 (364)
|.+ +|..+ +..+... +. ....|.....+++.+.||.+.+.|+.+ ...... .+.....+. .
T Consensus 149 v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~ 218 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q 218 (368)
T ss_dssp EEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E
T ss_pred EEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c
Confidence 888 99877 4444321 11 223453445666777889888888876 222221 111122333 3
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc----------cccceeEEEEccCCCcEEEeecCC-C-----CCe
Q 040533 181 WSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD----------HRAAVKALAWCPYQFNVLASGGGT-Q-----DGC 244 (364)
Q Consensus 181 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~g~-~-----d~~ 244 (364)
++++..++..+. +.+.+.|+..... +.+..+.. .......++++|+++.++++.... . ++.
T Consensus 219 -~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~ 295 (368)
T 1mda_H 219 -ANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295 (368)
T ss_dssp -ETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE
T ss_pred -cccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCC
Confidence 566666666666 8999999864221 11111110 111222378999998888753100 1 235
Q ss_pred EEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecC
Q 040533 245 IKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSP 320 (364)
Q Consensus 245 i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 320 (364)
+.++|+.+++.+..+..+.....++++|+|+.++.+..+ .++.|.++|+.+++.+.++..... ...+++.+
T Consensus 296 ~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~----~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 296 TSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA----GTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET----TTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred EEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccC----CCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 669999999999988877789999999999876555421 289999999999999999875543 35566543
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.42 E-value=7.7e-11 Score=109.22 Aligned_cols=285 Identities=12% Similarity=0.071 Sum_probs=178.8
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCC--------CCc-eEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGED--------DFP-TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~--------~~v-~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
+.+++++.++.|+.+|..+|+..=........ ..+ ..++. ++..+++++.|+.|..+|.++|+.+..+.
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence 34666667889999999999864433321110 000 11222 35678888899999999999999887766
Q ss_pred cC--CC---cEE-EEEeecCCCCEEEEee------CCCcEEEEEcccCcceeeeeecc----------------------
Q 040533 127 GH--DK---RVA-TASWNHWNGHILTSGS------QDKSIINHDVRVSNNVTSRINAH---------------------- 172 (364)
Q Consensus 127 ~~--~~---~v~-~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~---------------------- 172 (364)
.. .. .+. +... . ++. ++.++ .+|.|..||.++++.........
T Consensus 149 ~~~~~~~~~~~~~sP~v-~-~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 149 TRADHKRSYTITGAPRV-V-NGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp CCSCTTSCCBCCSCCEE-E-TTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred CcCCCCCCccccCCcEE-E-CCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 42 11 111 1111 1 444 44443 36899999999887543322100
Q ss_pred --------cCcEEEEEEcCCCCEEEEEeCCCe-------------------EEEEeCCCCCCCcceEEecc--cc-----
Q 040533 173 --------TAEVCGLKWSNEGNLLASGGDDNL-------------------VHVWDHSKMSSSKCLHRFRD--HR----- 218 (364)
Q Consensus 173 --------~~~v~~~~~~~~~~~l~~~~~d~~-------------------i~iwd~~~~~~~~~~~~~~~--~~----- 218 (364)
......++++|+..+++.+..++. |..+|.++++. +-.++. |.
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~---~W~~~~~~~d~wd~~ 302 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY---VWHYQTTPGDAWDYT 302 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE---EEEEESSTTCCSCCC
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce---eEeeecCCccccccc
Confidence 001125788888889998887764 99999877543 444432 21
Q ss_pred --cceeEEEEccCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecCC-------------------------------
Q 040533 219 --AAVKALAWCPYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA------------------------------- 263 (364)
Q Consensus 219 --~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~------------------------------- 263 (364)
.+........++. .+++.+. .+|.++++|.++|+.+.......
T Consensus 303 ~~~~~~l~d~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~ 380 (689)
T 1yiq_A 303 ATQHMILAELPIDGKPRKVLMQAP--KNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNL 380 (689)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEE
T ss_pred CCCCcEEEeeccCCcEEEEEEEEC--CCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeE
Confidence 1111111122332 2555554 89999999999999885443211
Q ss_pred ---------CeEEEEEcCCccceeeeccC---------------------Ccc------------------CCCCeEEEe
Q 040533 264 ---------QICGLEWNRHHKEILSGHGF---------------------SSS------------------GDGQKLCLW 295 (364)
Q Consensus 264 ---------~v~~~~~~~~~~~l~~~~~~---------------------~~~------------------~~~~~i~i~ 295 (364)
....++++|+...+++...- ..+ ..++.|..|
T Consensus 381 ~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~ 460 (689)
T 1yiq_A 381 VTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAW 460 (689)
T ss_dssp ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEE
T ss_pred eCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEE
Confidence 01136788887777654210 000 014889999
Q ss_pred eCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceecc
Q 040533 296 KYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVSH 351 (364)
Q Consensus 296 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 351 (364)
|+.+++.+.+++.+. ++..-.+...+.+++.++.||.|+.||.++++.+..+...
T Consensus 461 D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 461 DPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp ETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 999999988876554 2333456667889999999999999999999998777643
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.41 E-value=4.5e-10 Score=96.81 Aligned_cols=257 Identities=8% Similarity=0.021 Sum_probs=157.9
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcE---
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRV--- 132 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v--- 132 (364)
+.+++++.++.|+.+|..+++..-....... ........ +..+++++.++.|..+|..+|+.+..........
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~--~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGE--ALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECSSC--CCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEeCCCc--eEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 4566777789999999999987544443221 11122222 4578888889999999999999887766432211
Q ss_pred --EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccC------cEEEEEEcC--CCCEEEEEeCCCeEEEEeC
Q 040533 133 --ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTA------EVCGLKWSN--EGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 133 --~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~------~v~~~~~~~--~~~~l~~~~~d~~i~iwd~ 202 (364)
..... .+..++.+..++.+..+|..+++........... .+..+.-.| .+..++.++.++.+..+|.
T Consensus 180 ~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~ 256 (376)
T 3q7m_A 180 GESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL 256 (376)
T ss_dssp CCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEET
T ss_pred CCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC
Confidence 12222 3456778888999999999877753332211100 000011111 2457777888999999998
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-C-CCeEEEEEcCCccceeee
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-K-AQICGLEWNRHHKEILSG 280 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~~~ 280 (364)
++++ .+.... ......+... +..+++.. .++.+..+|..+++.+..... . ......... +..++++
T Consensus 257 ~tG~---~~w~~~--~~~~~~~~~~--~~~l~~~~---~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~ 324 (376)
T 3q7m_A 257 RSGQ---IMWKRE--LGSVNDFIVD--GNRIYLVD---QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVG 324 (376)
T ss_dssp TTCC---EEEEEC--CCCEEEEEEE--TTEEEEEE---TTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEE
T ss_pred CCCc---EEeecc--CCCCCCceEE--CCEEEEEc---CCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEE
Confidence 7653 233332 2223344443 33555543 588999999999998877652 2 222233332 3444444
Q ss_pred ccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 281 HGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 281 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
. .++.+..+|..+++.+.........+...... .+..|+.++.+|.|..|+
T Consensus 325 ~------~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 325 D------SEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp C------TTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred e------CCCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence 3 38899999999999887776533333322111 245788899999999986
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.41 E-value=9.5e-11 Score=108.63 Aligned_cols=262 Identities=13% Similarity=0.120 Sum_probs=164.5
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC---CCCEEEEEe------cCCcEEEEecCCcceeeeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ---DAKTLAVGY------MASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~ 126 (364)
+.+++++.|+.|+.+|..+|+..-......+......+..+| ++ .++++. .+|.|..||.++|+.+..+.
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 346666679999999999998754444320111111111222 44 455554 26899999999999887665
Q ss_pred cCC-------------------------------CcEEEEEeecCCCCEEEEeeCCCc-------------------EEE
Q 040533 127 GHD-------------------------------KRVATASWNHWNGHILTSGSQDKS-------------------IIN 156 (364)
Q Consensus 127 ~~~-------------------------------~~v~~~~~~~~~~~~l~~~~~dg~-------------------i~~ 156 (364)
... .....++++| +..+++.+..++. |..
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 210 0112567888 7788888887763 999
Q ss_pred EEcccCcceeeeeec-cc-------CcEEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCCCCcceEEeccc--------
Q 040533 157 HDVRVSNNVTSRINA-HT-------AEVCGLKWSNEGN---LLASGGDDNLVHVWDHSKMSSSKCLHRFRDH-------- 217 (364)
Q Consensus 157 ~d~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------- 217 (364)
+|.++++........ |. .++.......+|+ .++.++.+|.++++|.++++. +......
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~ 356 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL---LSAKGIVPQSWTKGM 356 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEEEE
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE---ecccccccccccccc
Confidence 999988754332211 21 1222222223554 788899999999999877543 2111000
Q ss_pred --------------------c-----------cceeEEEEccCCCcEEEeec------------------------C---
Q 040533 218 --------------------R-----------AAVKALAWCPYQFNVLASGG------------------------G--- 239 (364)
Q Consensus 218 --------------------~-----------~~v~~~~~~~~~~~~~~~~~------------------------g--- 239 (364)
. ..-..++++|+...+++... |
T Consensus 357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 436 (689)
T 1yiq_A 357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRT 436 (689)
T ss_dssp ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEE
T ss_pred CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccc
Confidence 0 00123678887654443210 0
Q ss_pred ---------------CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee
Q 040533 240 ---------------TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG 304 (364)
Q Consensus 240 ---------------~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~ 304 (364)
..+|.|..||+.+++.+..+..+.+...-.+...+..++.+.. |+.++.||.++++.+.
T Consensus 437 ~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~------dg~l~a~D~~tG~~lw 510 (689)
T 1yiq_A 437 GMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSA------DGRVIAYAADTGEKLW 510 (689)
T ss_dssp CCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEE
T ss_pred cccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECC------CCcEEEEECCCCccce
Confidence 0148899999999999988887766655566667777777643 9999999999999998
Q ss_pred eccccccc-eeEEeecCCCCE-EEEE
Q 040533 305 ELQHQTSR-ILELSQSPDGLT-VVSA 328 (364)
Q Consensus 305 ~~~~~~~~-i~~i~~~~~~~~-l~~~ 328 (364)
+++...+. ..-+.|..+|+. +++.
T Consensus 511 ~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 511 EQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred eeeCCCCcccCceEEEECCEEEEEEE
Confidence 88754322 234667778874 4433
No 232
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.40 E-value=3.7e-11 Score=106.24 Aligned_cols=247 Identities=9% Similarity=0.048 Sum_probs=172.3
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEE-c-CCCCEEEEEe------------------cCCcEEEEecCCcceee
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISW-S-QDAKTLAVGY------------------MASKLQLWDAETSKLIR 123 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~l~~~~------------------~dg~i~iw~~~~~~~~~ 123 (364)
++.|.+.|+.+.++..+.+++. ...+..+++ + |+++++++++ .++.+.+.|.++++...
T Consensus 111 ~~rVavIdl~t~~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~ 189 (595)
T 1fwx_A 111 NTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAW 189 (595)
T ss_dssp TTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCceEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEE
Confidence 5689999999999888777643 345788898 5 9999998884 34579999999998888
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCC---------------cEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEE
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDK---------------SIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLL 188 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------------~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (364)
++.-.. ....++++| +++++++.+.+. .|.+.|...... +.++|+..
T Consensus 190 qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~----------------~v~~Gk~~ 251 (595)
T 1fwx_A 190 QVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK----------------AIAAGDYQ 251 (595)
T ss_dssp EEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH----------------HHHHTCSE
T ss_pred EEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeE----------------eccCCCee
Confidence 877433 446678999 888888888653 234444322111 22334433
Q ss_pred EEEeCCCeEEEEeCCCCCCCcc-eEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe------------E
Q 040533 189 ASGGDDNLVHVWDHSKMSSSKC-LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT------------C 255 (364)
Q Consensus 189 ~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~------------~ 255 (364)
.. +.|.+.|.++.. .+. +..+. -.....++.++|||+++++++. .+.+|.++|+.+.+ .
T Consensus 252 ~i----~~V~VID~~~~~-~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~--~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 252 EL----NGVKVVDGRKEA-SSLFTRYIP-IANNPHGCNMAPDKKHLCVAGK--LSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp EE----TTEEEEECSGGG-CCSSEEEEE-EESSCCCEEECTTSSEEEEECT--TSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred EE----CcEEEEeCcccC-CceeEEEEe-cCCCceEEEEcCCCCEEEEeCC--CCCeEEEEECcccccccccccCcccce
Confidence 33 459999987621 122 33332 2345678999999999999876 78999999998653 4
Q ss_pred EEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC----------Cceeeeccccccc-----eeEEeecC
Q 040533 256 IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH----------MTKWGELQHQTSR-----ILELSQSP 320 (364)
Q Consensus 256 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~----------~~~~~~~~~~~~~-----i~~i~~~~ 320 (364)
...+........++|+|+| .+++.. .-++.|.+||+.+ .+.+.++..|-.+ -..+.++|
T Consensus 324 ~~~v~vG~gP~h~aF~~dG-~aY~t~-----~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~ 397 (595)
T 1fwx_A 324 VAEPELGLGPLHTAFDGRG-NAYTSL-----FLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA 397 (595)
T ss_dssp EECCBCCSCEEEEEECTTS-EEEEEE-----TTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred EEEcCCCCCcceEEECCCC-eEEEEE-----ecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC
Confidence 5566666778999999999 655543 2399999999876 5566666655432 13446789
Q ss_pred CCCEEEEEeC---CCcE----------EEEEeeCCC
Q 040533 321 DGLTVVSAAA---DETL----------RFWEAFGPS 343 (364)
Q Consensus 321 ~~~~l~~~~~---dg~i----------~vw~~~~~~ 343 (364)
||++|+++.. |..+ .++|+..++
T Consensus 398 DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 398 TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 9999999753 4432 889995544
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.39 E-value=3.1e-13 Score=116.00 Aligned_cols=188 Identities=10% Similarity=0.004 Sum_probs=104.6
Q ss_pred CCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc-CcE
Q 040533 98 DAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT-AEV 176 (364)
Q Consensus 98 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~v 176 (364)
++..+++++.||.|+.||..+|+.+..+.. ..+.+..+.+ ++..+++++.||.|+.||..+++.... ...+. ..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~-~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTK-LPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEE-CSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeee-eeccCcccc
Confidence 577899999999999999999999988875 4555555555 677888888999999999987764322 22111 111
Q ss_pred E-EEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 177 C-GLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 177 ~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
. +..+. .+..+++++.++.++.||.++++. +..+..+. ...++|++..+++ ++ .|+.|+.||.++++.
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~---~w~~~~~~----~~~~~p~~~~v~~-~~--~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEK---QQTLSSAF----ADSLSPSTSLLYL-GR--TEYTITMYDTKTREL 152 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC-----------------------------EEE-EE--EEEEEECCCSSSSSC
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcE---EEEecCCC----cccccccCCEEEE-Ee--cCCEEEEEECCCCCE
Confidence 0 01111 345678888899999999877543 44443332 2345666644444 43 689999999999987
Q ss_pred EEEEecCCCeEEEEEcCCc---cceeeeccCCccCCCCeEEEeeCCCCceeeecc
Q 040533 256 IHSVDTKAQICGLEWNRHH---KEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 256 ~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 307 (364)
+..+.... .....++++. ..++++. .++.++.||..+++.+.+..
T Consensus 153 ~W~~~~~~-~~~~~~~~~~~~~~~v~~~~------~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 153 RWNATYFD-YAASLPEDDVDYKMSHFVSN------GDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCEEEEEE-ECCBCCCCCTTCCCCEEEEE------TSCEEEEECTTTCCEEEEEE
T ss_pred EEeEeccc-ccCccccCCccccceEEEEC------CCCEEEEEECCCCcEEEEec
Confidence 65554221 1223333322 3444443 38999999999998877655
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.38 E-value=3.8e-10 Score=96.44 Aligned_cols=218 Identities=11% Similarity=0.049 Sum_probs=145.0
Q ss_pred EEEEE-eCCeEEEEECCCC----ceeeeee---e--cCCCCCceEEEEcCCCCEEEEEecC------CcEEEEecCCcce
Q 040533 58 ILAIA-LGLELYLWKQENG----EVQKLLK---V--TGEDDFPTSISWSQDAKTLAVGYMA------SKLQLWDAETSKL 121 (364)
Q Consensus 58 ~~~~~-~~~~i~iw~~~~~----~~~~~~~---~--~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iw~~~~~~~ 121 (364)
+++.+ .++.|+++|..+. +..+..+ + +........+..+|+| +++++..+ |.|.++|.++++.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 44333 4689999998755 3333331 1 0012245677889999 66666555 7899999999999
Q ss_pred eeeeecCCC---cEEEEEeecCCCCEEEEee-------------------CCCcEEEEEcccCcceeeeeecc--cCcEE
Q 040533 122 IRNLEGHDK---RVATASWNHWNGHILTSGS-------------------QDKSIINHDVRVSNNVTSRINAH--TAEVC 177 (364)
Q Consensus 122 ~~~~~~~~~---~v~~~~~~~~~~~~l~~~~-------------------~dg~i~~~d~~~~~~~~~~~~~~--~~~v~ 177 (364)
+.++..... --..+.|+| +++.+++.. .+.+|.+||+.+++ ....+..- .....
T Consensus 177 ~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-~~~tI~vg~~g~~P~ 254 (462)
T 2ece_A 177 LGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-RIHSLTLGEENRMAL 254 (462)
T ss_dssp EEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-EEEEEESCTTEEEEE
T ss_pred EEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-EeeEEecCCCCCccc
Confidence 988863222 234578899 888888874 36799999998754 34444332 12344
Q ss_pred EEEE--cCCCCEEEEEeC------CCeEEEEeCCCCCCCcceEEe--cc----------------cccceeEEEEccCCC
Q 040533 178 GLKW--SNEGNLLASGGD------DNLVHVWDHSKMSSSKCLHRF--RD----------------HRAAVKALAWCPYQF 231 (364)
Q Consensus 178 ~~~~--~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~--~~----------------~~~~v~~~~~~~~~~ 231 (364)
.+.| +|++++++++++ +++|.+|....+ ..+..+.+ .. .......+.++|+++
T Consensus 255 ~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr 333 (462)
T 2ece_A 255 ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDK 333 (462)
T ss_dssp EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSC
T ss_pred eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCC
Confidence 5555 999998887774 567877654431 11111111 10 023467899999999
Q ss_pred cEEEeecCCCCCeEEEEECCC---CeEEEEEecCC---------------CeEEEEEcCCccceeeec
Q 040533 232 NVLASGGGTQDGCIKIWNVQK---GTCIHSVDTKA---------------QICGLEWNRHHKEILSGH 281 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~~~~---------------~v~~~~~~~~~~~l~~~~ 281 (364)
+++++.- ..+.|.+||+.. .+.+..+...+ ....++++|+|++|+++.
T Consensus 334 fLYVSnr--g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 334 FLYLSLW--GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEEET--TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEeC--CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9998876 578999999863 45666665542 258899999999999886
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.37 E-value=2.6e-10 Score=96.26 Aligned_cols=263 Identities=12% Similarity=0.072 Sum_probs=163.6
Q ss_pred ecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC
Q 040533 49 NMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128 (364)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 128 (364)
..+...+++.+-++.++ |..+|. +++....... .........+. +..+.+++.++.|..+|.. ++........
T Consensus 63 ~~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~~~~--~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~ 135 (330)
T 3hxj_A 63 CRPSIGKDGTIYFGSDK-VYAINP-DGTEKWRFDT--KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTK 135 (330)
T ss_dssp ECCEETTTTEECCSSCE-EEEECC-CGGGGGGSCC-------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECS
T ss_pred cceEEecCCcEEEecCc-EEEECC-CCcEEEEEEC--CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCC
Confidence 44444444444444445 888886 4543222221 12222333333 4567788888999999988 7777666655
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS 208 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 208 (364)
...+.++...+ ++. +..++.++.|..+|.. +.. ..........+.++...+++.+.+ ++ +.|..+| .++
T Consensus 136 ~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~-~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g--- 204 (330)
T 3hxj_A 136 KAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTE-KWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDG--- 204 (330)
T ss_dssp SCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCE-EEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTS---
T ss_pred CceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCE-eEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCC---
Confidence 55566666655 554 6667788999999987 543 333334445566777777776544 44 7799999 433
Q ss_pred cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCC-eEEEEEcCCccceeeeccCCccC
Q 040533 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQ-ICGLEWNRHHKEILSGHGFSSSG 287 (364)
Q Consensus 209 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~~~~~ 287 (364)
+...........+.++...+++ .+++.. .++.+..+|. +++.+..+..... +..+...+++...+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t---~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t------- 272 (330)
T 3hxj_A 205 TEKWNFYAGYWTVTRPAISEDG-TIYVTS---LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGS------- 272 (330)
T ss_dssp CEEEEECCSSCCCSCCEECTTS-CEEEEE---TTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEEC-------
T ss_pred cEEEEEccCCcceeceEECCCC-eEEEEc---CCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEec-------
Confidence 2344444445668888888877 454432 5778888874 5666666654433 4456666666555443
Q ss_pred CCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 288 DGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 288 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
.++.|..+|. +++.+..+......+.++...++|. |..++.+|.+++......+
T Consensus 273 ~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 273 YDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp TTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred CCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 2778999995 6777766665556677888877875 5668899999998765443
No 236
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.36 E-value=3.5e-09 Score=86.52 Aligned_cols=251 Identities=9% Similarity=0.037 Sum_probs=155.0
Q ss_pred CCEEEEEecCCcEEEEecCCccee-----eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc
Q 040533 99 AKTLAVGYMASKLQLWDAETSKLI-----RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT 173 (364)
Q Consensus 99 ~~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 173 (364)
|++|+.+.. +.|+.++++..... ..+......+..++|++.++.++++-..++.|..+++..... ........
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~ 78 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDL 78 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTC
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECCC
Confidence 345666553 57888888754321 112222345789999984445555555678999999875442 22222223
Q ss_pred CcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 174 AEVCGLKWSNEGNLLASG-GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
.....+++++++..|+.+ ...+.|.++++..... . ............++++|++..++++..+...+.|..+++..
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~--~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-R--VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E--EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-E--EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 467899999976555544 4567899999764221 1 11111224568899999776777765411247898888764
Q ss_pred CeEEEEEe-c-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEE-e
Q 040533 253 GTCIHSVD-T-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSA-A 329 (364)
Q Consensus 253 ~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~ 329 (364)
.. ...+. . -.....+++++++..|+.+. ...+.|..+|.........+.. ......++.. +..|+.+ .
T Consensus 156 ~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d-----~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~ 226 (267)
T 1npe_A 156 TN-RRILAQDNLGLPNGLTFDAFSSQLCWVD-----AGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDW 226 (267)
T ss_dssp CC-CEEEECTTCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEET
T ss_pred CC-cEEEEECCCCCCcEEEEcCCCCEEEEEE-----CCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEEC
Confidence 32 22332 2 24578999999887776654 2368999999875443333332 2234566664 4455544 4
Q ss_pred CCCcEEEEEeeCCCCCcceeccC-CceeeeeeccC
Q 040533 330 ADETLRFWEAFGPSGSGDFVSHL-DGLLSLKVSPI 363 (364)
Q Consensus 330 ~dg~i~vw~~~~~~~~~~~~~~~-~~v~~~~~sp~ 363 (364)
..+.|.++|..+++.+..+.... ....++++.|.
T Consensus 227 ~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 227 KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred CCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 56899999998887777665332 24778888875
No 237
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.34 E-value=4.8e-10 Score=95.28 Aligned_cols=230 Identities=9% Similarity=0.031 Sum_probs=141.3
Q ss_pred eecccCCCcc-EEEEEe---CCeEEEEECCCCceeeee----eecCCCCCceEEEEcCCCCEEEEEec-----CCcEEEE
Q 040533 48 SNMMDWGRNN-ILAIAL---GLELYLWKQENGEVQKLL----KVTGEDDFPTSISWSQDAKTLAVGYM-----ASKLQLW 114 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~~---~~~i~iw~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw 114 (364)
...++.++++ +++... ++.+.||.+.+++....- ...++...+..++++++++++++-.. ++.|.+|
T Consensus 19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~ 98 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAW 98 (343)
T ss_dssp EEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEE
T ss_pred cceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEE
Confidence 4556666654 443321 232444444345432110 11235568999999999886666544 5789999
Q ss_pred ecCCcceeeeeecC------CCcEEEEEeecCCCCEEEEee---CCCcEEEEEcccCcceeeeeecc-------------
Q 040533 115 DAETSKLIRNLEGH------DKRVATASWNHWNGHILTSGS---QDKSIINHDVRVSNNVTSRINAH------------- 172 (364)
Q Consensus 115 ~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~------------- 172 (364)
|+.+++.+..+... ...+..++++|.++..+++.. .++.|.+||+.++.. ...+..|
T Consensus 99 d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-~r~~~~~~~~~~~~~~~~~~ 177 (343)
T 2qe8_A 99 DTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-ARVLQGYPGIAPEDIDLVID 177 (343)
T ss_dssp ETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-EEECTTCTTTSCCSCCCEET
T ss_pred ECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-EEEecCCCcccccccceeEC
Confidence 99999877666532 235688999983445555554 678999999876542 2222211
Q ss_pred ----------------cCcEEEEEEcCCCCEEEEEeCCC-eEEEEeCCC---CCC--Ccce--EEecccccceeEEEEcc
Q 040533 173 ----------------TAEVCGLKWSNEGNLLASGGDDN-LVHVWDHSK---MSS--SKCL--HRFRDHRAAVKALAWCP 228 (364)
Q Consensus 173 ----------------~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~---~~~--~~~~--~~~~~~~~~v~~~~~~~ 228 (364)
...+..++|+|+++.|+++..++ .+..++... ... .+.. ....++......+++++
T Consensus 178 g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~ 257 (343)
T 2qe8_A 178 GVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK 257 (343)
T ss_dssp TEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT
T ss_pred CEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC
Confidence 12368899999999888887665 555554321 100 0000 01113344567899999
Q ss_pred CCCcEEEeecCCCCCeEEEEECCCCeEEEEEec--CCCeEEEEEcCCccceeeec
Q 040533 229 YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT--KAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 229 ~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~ 281 (364)
+| .++++.. .++.|.+||..+++....... .....++++.+++.++++..
T Consensus 258 ~G-~l~va~~--~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 258 DH-NIYVGDL--AHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp TC-CEEEEEG--GGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred CC-CEEEEcc--CCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 98 5666655 689999999866764433332 24578999999887666653
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.29 E-value=8.5e-11 Score=99.31 Aligned_cols=260 Identities=13% Similarity=0.075 Sum_probs=162.8
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEE
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATA 135 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 135 (364)
+.+.+++.++.|..|| .+++...... .+...+.++...+++. |.+++.+ |..+|. +++....+..........
T Consensus 31 g~l~v~t~~~~l~~~d-~~g~~~~~~~--~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~ 103 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TDGSVKWFFK--SGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDF 103 (330)
T ss_dssp SCEECSSTTTTTEEEC-TTSCEEESSC--GGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCE
T ss_pred CeEEEEcCCCEEEEEC-CCCcEEEEEe--cCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCc
Confidence 3455666688899999 7777533332 2233456667766665 5555544 888886 666655544333323333
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR 215 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 215 (364)
... +..+..++.++.+..+|.. +.. ..........+.++...+++. +..++.++.|..+|.. + +....+.
T Consensus 104 ~~~---~~~l~v~t~~~~l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g---~~~~~~~ 173 (330)
T 3hxj_A 104 TIF---EDILYVTSMDGHLYAINTD-GTE-KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-G---TEKWRFK 173 (330)
T ss_dssp EEE---TTEEEEECTTSEEEEECTT-SCE-EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-S---CEEEEEE
T ss_pred eEE---CCEEEEEecCCEEEEEcCC-CCE-EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-C---CEeEEEe
Confidence 332 5567778888999999987 543 333333444456666776775 5667778999999965 3 2344444
Q ss_pred ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEE
Q 040533 216 DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 216 ~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i 294 (364)
.....+.++...+++ .+++. . +.|..+| .+++........ ..+.++...++|...+.+. ++.+..
T Consensus 174 ~~~~~~~~~~~d~~g-~l~v~----t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~-------~~gl~~ 239 (330)
T 3hxj_A 174 TNDAITSAASIGKDG-TIYFG----S-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSL-------DGHLYA 239 (330)
T ss_dssp CSSCCCSCCEECTTC-CEEEE----S-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEET-------TTEEEE
T ss_pred cCCCceeeeEEcCCC-EEEEE----e-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcC-------CCeEEE
Confidence 445567777777777 44442 2 7799999 777777666543 5578888888887665542 678888
Q ss_pred eeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 295 WKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 295 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
+| .+++.+..+......+..+.+.+++ .|..++.+|.|..+|. +++....+.
T Consensus 240 ~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~ 291 (330)
T 3hxj_A 240 IN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE 291 (330)
T ss_dssp EC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE
T ss_pred EC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE
Confidence 87 4566666555444444556666566 5667788888988885 454444333
No 239
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.28 E-value=2.9e-12 Score=109.99 Aligned_cols=188 Identities=8% Similarity=-0.016 Sum_probs=104.2
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEeccccc-
Q 040533 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRA- 219 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~- 219 (364)
++..+++++.||.|..||..+++.... +.. ..+.+..+..++..+++++.|+.|+.||..+++. +..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~-~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~---~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT-LKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG---LTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE-EEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC---SEECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE-ecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce---eeeeeccCcc
Confidence 678899999999999999998875433 333 4444444556777888888999999999876543 333332211
Q ss_pred cee-EEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 220 AVK-ALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 220 ~v~-~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
.+. +..+. .+ ..+++++ .++.++.||..+|+.+..+..+.. ..++|++..++++.. ++.|+.||..
T Consensus 82 ~~~~sp~~~-~~-~~v~~g~--~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~------dg~v~a~d~~ 148 (369)
T 2hz6_A 82 LVQASPCRS-SD-GILYMGK--KQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRT------EYTITMYDTK 148 (369)
T ss_dssp HHTTCSCC-------CCCCE--EEEEEEEECCC-------------------------EEEEEE------EEEEECCCSS
T ss_pred ccccCceEe-cC-CEEEEEe--CCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEec------CCEEEEEECC
Confidence 111 11111 22 2344443 689999999999998877765432 345667777877754 8999999999
Q ss_pred CCceeeeccccccceeEEeecCCC---CEEEEEeCCCcEEEEEeeCCCCCccee
Q 040533 299 HMTKWGELQHQTSRILELSQSPDG---LTVVSAAADETLRFWEAFGPSGSGDFV 349 (364)
Q Consensus 299 ~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~~dg~i~vw~~~~~~~~~~~~ 349 (364)
+++.+..+..+. .....++++. ..+++++.||.|+.||..+++.+..+.
T Consensus 149 tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 149 TRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp SSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred CCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 998877665322 2334444432 567788999999999999888765544
No 240
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.27 E-value=2.2e-08 Score=84.23 Aligned_cols=244 Identities=9% Similarity=-0.011 Sum_probs=149.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec--------------------CCCcEEEEEeecCCCCE
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG--------------------HDKRVATASWNHWNGHI 144 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~~ 144 (364)
+.-....+++|.++++++.++..++.|..|+..+++.. .+.. .......+++.+ +...
T Consensus 16 g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~ 93 (322)
T 2fp8_A 16 APSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQ 93 (322)
T ss_dssp CSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTE
T ss_pred CccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcC-CCCc
Confidence 33345678999999987888888999999998765432 2211 013578899986 3444
Q ss_pred EEEeeCCCcEEEEEcccCcceeeeeec-----ccCcEEEEEEcC-CCCEEEEEeC-----------------CCeEEEEe
Q 040533 145 LTSGSQDKSIINHDVRVSNNVTSRINA-----HTAEVCGLKWSN-EGNLLASGGD-----------------DNLVHVWD 201 (364)
Q Consensus 145 l~~~~~dg~i~~~d~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~iwd 201 (364)
|+.+...+.+..+|..++. ...+.. .......+++.+ +|++.++-.. ++.|..+|
T Consensus 94 l~v~d~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEEETTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEEEECCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 5555555558888876432 111111 113468899999 8976665432 36788888
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC---eEEEEEecCCCeEEEEEcCCcccee
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG---TCIHSVDTKAQICGLEWNRHHKEIL 278 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~ 278 (364)
..... +..+.........++++|++..++++.. ..+.|..|++... .........+ ...++++++|.+.+
T Consensus 172 ~~~~~----~~~~~~~~~~p~gia~~~dg~~lyv~d~--~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 172 PSTKE----TTLLLKELHVPGGAEVSADSSFVLVAEF--LSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV 244 (322)
T ss_dssp TTTTE----EEEEEEEESCCCEEEECTTSSEEEEEEG--GGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEE
T ss_pred CCCCE----EEEeccCCccCcceEECCCCCEEEEEeC--CCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEE
Confidence 65432 2222222234567999999876777654 5789999998742 2111112233 78899999998666
Q ss_pred eeccCCc----cCCCCeEEEeeCCCCceeeeccccc----cceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 279 SGHGFSS----SGDGQKLCLWKYPHMTKWGELQHQT----SRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 279 ~~~~~~~----~~~~~~i~i~d~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
+...... .+..+.|..+|. .++.+..+.... ..++.+++ .++++.++...++.|.++++..
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 5421000 001356888886 466666654332 34666766 4666666666778899998764
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.22 E-value=1.5e-08 Score=81.47 Aligned_cols=206 Identities=10% Similarity=0.037 Sum_probs=136.7
Q ss_pred cceeeeeecCCC--cEEEEEeecCCCCEEEEeeC--CCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEE-EeC
Q 040533 119 SKLIRNLEGHDK--RVATASWNHWNGHILTSGSQ--DKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLAS-GGD 193 (364)
Q Consensus 119 ~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~ 193 (364)
.+.+.++. |.. ....+.|+| ++.++++.+. ++.|.++|+.+++.......+.......+++. +..|+. .-.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 34556665 543 357899998 6655555443 57999999998875333221222223355555 444544 446
Q ss_pred CCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC------CeEE
Q 040533 194 DNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA------QICG 267 (364)
Q Consensus 194 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~------~v~~ 267 (364)
++.+.++|..+. +.+.++..... ....+++++..++++.+ ++.|.++|..+.+.+..+.... .+..
T Consensus 85 ~~~v~viD~~t~---~v~~~i~~g~~--~g~glt~Dg~~l~vs~g---s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne 156 (266)
T 2iwa_A 85 KNIGFIYDRRTL---SNIKNFTHQMK--DGWGLATDGKILYGSDG---TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE 156 (266)
T ss_dssp CSEEEEEETTTT---EEEEEEECCSS--SCCEEEECSSSEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred CCEEEEEECCCC---cEEEEEECCCC--CeEEEEECCCEEEEECC---CCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence 789999997764 33555542211 12335567878888753 7899999999999888876431 3677
Q ss_pred EEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccc-------------cceeEEeecCCCCE-EEEEeCCCc
Q 040533 268 LEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT-------------SRILELSQSPDGLT-VVSAAADET 333 (364)
Q Consensus 268 ~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-------------~~i~~i~~~~~~~~-l~~~~~dg~ 333 (364)
+.|. +|. +++.. ..++.|.+.|..+++.+..+.... .....|+|+|+++. ++++...+.
T Consensus 157 le~~-dg~-lyvn~-----~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~ 229 (266)
T 2iwa_A 157 LEYI-NGE-VWANI-----WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK 229 (266)
T ss_dssp EEEE-TTE-EEEEE-----TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred EEEE-CCE-EEEec-----CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence 8888 664 44332 237899999999999988875321 24589999999865 555667789
Q ss_pred EEEEEeeCCC
Q 040533 334 LRFWEAFGPS 343 (364)
Q Consensus 334 i~vw~~~~~~ 343 (364)
|.+.++....
T Consensus 230 v~~i~l~~~~ 239 (266)
T 2iwa_A 230 LFEIKLHLVR 239 (266)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEeccc
Confidence 9999988754
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.22 E-value=1.1e-08 Score=94.67 Aligned_cols=263 Identities=13% Similarity=0.113 Sum_probs=160.0
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcC--CCCEEEEEec------CCcEEEEecCCcceeeeeec
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQ--DAKTLAVGYM------ASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~ 127 (364)
+.+++++.++.|+.+|..+++..-........ ....+.-+| .+..++++.. +|.|..+|.++|+.+..+..
T Consensus 118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPA-KPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSCTT-SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CEEEEEcCCCEEEEEECCCCCEeeeeccCCCC-CcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 34666667999999999999875444432111 001111111 2345555543 58999999999998877652
Q ss_pred CC---C----------------------------cEEEEEeecCCCCEEEEeeCCC-------------------cEEEE
Q 040533 128 HD---K----------------------------RVATASWNHWNGHILTSGSQDK-------------------SIINH 157 (364)
Q Consensus 128 ~~---~----------------------------~v~~~~~~~~~~~~l~~~~~dg-------------------~i~~~ 157 (364)
.. . ....+++.| ...+++.++.++ .|..+
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 10 0 012367777 677888887665 38999
Q ss_pred EcccCcceeeeeec-cc-------CcEEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCCCCcceEEecccc--------
Q 040533 158 DVRVSNNVTSRINA-HT-------AEVCGLKWSNEGN---LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHR-------- 218 (364)
Q Consensus 158 d~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------- 218 (364)
|.++++........ |. .+.....+..+|+ .++.++.+|.++++|..+++. +.......
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL---ISAEKFGKVTWAEKVD 352 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCCSEEEEC
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE---eccccccccccccccc
Confidence 99988754332222 21 2333333333564 688899999999999777543 21111000
Q ss_pred ----cc------------------------eeEEEEccCCCcEEEee---------------------------------
Q 040533 219 ----AA------------------------VKALAWCPYQFNVLASG--------------------------------- 237 (364)
Q Consensus 219 ----~~------------------------v~~~~~~~~~~~~~~~~--------------------------------- 237 (364)
.+ -..++++|+...+++..
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 00 01256777654443310
Q ss_pred cCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccce-eEE
Q 040533 238 GGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRI-LEL 316 (364)
Q Consensus 238 ~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i-~~i 316 (364)
....+|.|..||+.+++.+.......+.....+...+..++.+.. ++.++.||..+++.+..++...... .-+
T Consensus 433 ~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~------dg~l~a~d~~tG~~l~~~~~~~~~~~~p~ 506 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTA------AGQMHAYSADKGEALWQFEAQSGIVAAPM 506 (668)
T ss_dssp GGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred CCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECC------cccchhhhhhcChhheEecCCCCcccCce
Confidence 001358899999999999988876665555555566777777643 9999999999999998886543211 223
Q ss_pred eecCCCC-EEEEEe
Q 040533 317 SQSPDGL-TVVSAA 329 (364)
Q Consensus 317 ~~~~~~~-~l~~~~ 329 (364)
.+..+|+ +++.++
T Consensus 507 ~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 507 TFELAGRQYVAIMA 520 (668)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEe
Confidence 3445666 455444
No 243
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.18 E-value=7.7e-08 Score=80.23 Aligned_cols=228 Identities=7% Similarity=0.034 Sum_probs=140.0
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCC--cEEEEEcccCcce
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDK--SIINHDVRVSNNV 165 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~ 165 (364)
.....++|+++++++++-..++.|..||... +....+. .......+++.+ +++++++..... .|..+|..++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~- 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTV- 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCE-
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeE-
Confidence 4577899999998777766788999999765 3333333 345788999999 788666554332 466667665542
Q ss_pred eeeee-cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEe---------cccccceeEEEEccCCCcEEE
Q 040533 166 TSRIN-AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRF---------RDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 166 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~ 235 (364)
..... ........++..+++..+++-..++.|+.+|...... + +... ...-.....+ +|++..+++
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~-~-v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG-S-IWLEHPMLARSNSESVFPAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE-E-EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE-e-EEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence 21111 1122345555555554455444688999998653210 0 1100 0111123445 788877888
Q ss_pred eecCCCCCeEEEEECCC-CeE--EEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce--eeeccccc
Q 040533 236 SGGGTQDGCIKIWNVQK-GTC--IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK--WGELQHQT 310 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~~-~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~--~~~~~~~~ 310 (364)
+.. ..+.|..+++.. ++. ...+........++++++|++.++... .+.|.+++.. ++. +..+....
T Consensus 184 ~d~--~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~------~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 184 SNT--EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI------YNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EET--TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT------TCCEEEECTT-CCEEEEECGGGTC
T ss_pred EeC--CCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCC------CCeEEEECCC-CCEEEEeeccccc
Confidence 765 678999999864 321 122222245677899999977665433 6789999975 554 22343333
Q ss_pred cceeEEeec---CCCCEEEEEeCCC
Q 040533 311 SRILELSQS---PDGLTVVSAAADE 332 (364)
Q Consensus 311 ~~i~~i~~~---~~~~~l~~~~~dg 332 (364)
...++++|. |+++.|+.++..+
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCceEEEEecccCCCCEEEEECCCC
Confidence 567899998 8888777766543
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.17 E-value=1e-08 Score=94.73 Aligned_cols=284 Identities=12% Similarity=0.052 Sum_probs=173.7
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCC--------CCc-eEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGED--------DFP-TSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~--------~~v-~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
+.+++++.++.|+-+|..+++..=........ ..+ ..+++ .+..+++++.|+.|..+|.++|+.+..+.
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence 44666777889999999999864333321100 000 11222 35678888889999999999999987766
Q ss_pred cCC----CcEEE-EEeecCCCCEEEEeeC------CCcEEEEEcccCcceeeeeec--c---------------------
Q 040533 127 GHD----KRVAT-ASWNHWNGHILTSGSQ------DKSIINHDVRVSNNVTSRINA--H--------------------- 172 (364)
Q Consensus 127 ~~~----~~v~~-~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~--~--------------------- 172 (364)
... ..+.+ .... ++ .++++.. +|.|..+|.++++........ .
T Consensus 145 ~~~~~~~~~~~~~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 145 TTDPAKPYSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp CSCTTSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred cCCCCCcceecCCCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 421 11111 1111 33 4555443 588999999888754332210 0
Q ss_pred -------cCcEEEEEEcCCCCEEEEEeCCC-------------------eEEEEeCCCCCCCcceEEecc--cc------
Q 040533 173 -------TAEVCGLKWSNEGNLLASGGDDN-------------------LVHVWDHSKMSSSKCLHRFRD--HR------ 218 (364)
Q Consensus 173 -------~~~v~~~~~~~~~~~l~~~~~d~-------------------~i~iwd~~~~~~~~~~~~~~~--~~------ 218 (364)
......+++.|+..+++.++.++ .|..+|.++++. +-.++. |.
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~---~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL---AWHYQVTPGDSWDFTA 298 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE---EEEEESSTTCCSCCCC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce---eeEeecCCCccccccC
Confidence 00112467888888888887765 388999877543 444332 21
Q ss_pred -cceeEEEEccCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecCC-------------C------------------
Q 040533 219 -AAVKALAWCPYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA-------------Q------------------ 264 (364)
Q Consensus 219 -~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-------------~------------------ 264 (364)
.+.....+..+++ .+++.+. .+|.++++|..+|+.+....... +
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~ 376 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAP--KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPS 376 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSC
T ss_pred CCCcEEEEeccCCcEEEEEEEEC--CCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCC
Confidence 1222222223443 2455554 89999999999999885443211 0
Q ss_pred ------eEEEEEcCCccceeeecc------------------CC------------ccCCCCeEEEeeCCCCceeeeccc
Q 040533 265 ------ICGLEWNRHHKEILSGHG------------------FS------------SSGDGQKLCLWKYPHMTKWGELQH 308 (364)
Q Consensus 265 ------v~~~~~~~~~~~l~~~~~------------------~~------------~~~~~~~i~i~d~~~~~~~~~~~~ 308 (364)
-..++++|+...+++... .. ....++.|.-||+.+++.+.+...
T Consensus 377 ~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~ 456 (668)
T 1kv9_A 377 PFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY 456 (668)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE
T ss_pred CccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC
Confidence 012567776655543210 00 112358899999999998877654
Q ss_pred cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 309 QTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
+. +.....+...+.+++.++.||.|+.||..+++.+..+..
T Consensus 457 ~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 457 PT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp SS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 33 333334455677899999999999999999988777654
No 245
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.16 E-value=3.6e-07 Score=77.58 Aligned_cols=255 Identities=9% Similarity=0.002 Sum_probs=156.6
Q ss_pred ceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee
Q 040533 90 PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI 169 (364)
Q Consensus 90 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 169 (364)
.+|.+..++ .+|+.+. ...|+..++........+. .......++|++.++.++++-...+.|..+++..... ....
T Consensus 36 ~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~ 111 (349)
T 3v64_C 36 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV 111 (349)
T ss_dssp SCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE
T ss_pred CcccccccC-ceeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eEEE
Confidence 455555553 4555553 4568888887655444443 3455789999984555555555678899999875542 2222
Q ss_pred ecccCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC-CeEEE
Q 040533 170 NAHTAEVCGLKWSNEGN-LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD-GCIKI 247 (364)
Q Consensus 170 ~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-~~i~i 247 (364)
.........+++.+.+. ++++-...+.|.+.++..... ...+.........++++|.+..++.+.. .. +.|..
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~l~~~~l~~P~~iavdp~~g~ly~td~--~~~~~I~r 186 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPRIEA 186 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECTTCSCEEEEEEETTTTEEEEEEC--SSSCEEEE
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce---EEEEeCCCCCcceEEEecCcCeEEEecc--CCCCEEEE
Confidence 22223457888987544 445555667899999764321 2222223345689999997778888764 34 88999
Q ss_pred EECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEE
Q 040533 248 WNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 248 ~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
+++........... -.....++++|++..|+.+. ...+.|..+++........+.........+++. .+...+
T Consensus 187 ~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD-----~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~ 260 (349)
T 3v64_C 187 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD-----AKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYW 260 (349)
T ss_dssp EETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEE
T ss_pred EeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEE-----CCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEE
Confidence 99865433222222 24578999999877777664 236789999986543333333333456778883 444555
Q ss_pred EEeCCCcEEEEEeeCCCCCcceeccCCceeeee
Q 040533 327 SAAADETLRFWEAFGPSGSGDFVSHLDGLLSLK 359 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~ 359 (364)
+-...+.|..++..+++....+........+++
T Consensus 261 td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 293 (349)
T 3v64_C 261 TDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 293 (349)
T ss_dssp EETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred ecCCCCeEEEEEccCCCccEEeccCCCCCceEE
Confidence 555677888888666766666554333444444
No 246
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.15 E-value=2.9e-07 Score=79.26 Aligned_cols=255 Identities=8% Similarity=-0.011 Sum_probs=158.2
Q ss_pred ceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee
Q 040533 90 PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI 169 (364)
Q Consensus 90 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 169 (364)
-.|.+..+ ..+|+.+. ...|+..++........+. .......++|++.++.++++-...+.|..+++..... ....
T Consensus 79 ~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~ 154 (386)
T 3v65_B 79 RSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV 154 (386)
T ss_dssp SCEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE
T ss_pred CeECCccc-cceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE
Confidence 34555555 34555554 4578888887665544444 3456789999984555556656778899999875542 2222
Q ss_pred ecccCcEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC-CeEEE
Q 040533 170 NAHTAEVCGLKWSNEGNL-LASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD-GCIKI 247 (364)
Q Consensus 170 ~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-~~i~i 247 (364)
.........+++.+.+.. +++-...+.|.+.++..... ...+.........++++|.+..++.+-. .. +.|..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~---~~l~~~~l~~P~giavdp~~g~ly~td~--~~~~~I~r 229 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPRIEA 229 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC---EEEECSSCSCEEEEEEETTTTEEEEEEC--SSSCEEEE
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce---EEeecCCCCCCcEEEEEcCCCeEEEecc--CCCCEEEE
Confidence 222234567888875444 44555567888888753221 2222223355789999998878888764 34 78999
Q ss_pred EECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEE
Q 040533 248 WNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 248 ~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
+++........... -.....++++|++..|+.+. ...+.|..+++........+.........+++ ..+.+++
T Consensus 230 ~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD-----~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 230 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD-----AKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYW 303 (386)
T ss_dssp EETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEE-----TTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEE
T ss_pred EeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEE-----CCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEE
Confidence 99865433333332 24578999998887777664 23678999998654333333333345677888 3445555
Q ss_pred EEeCCCcEEEEEeeCCCCCcceeccCCceeeee
Q 040533 327 SAAADETLRFWEAFGPSGSGDFVSHLDGLLSLK 359 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~ 359 (364)
+-...+.|..++..+++....+........+++
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 336 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 336 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred eeCCCCeEEEEECCCCcceEEEccCCCCCceEE
Confidence 656678888888667776666654333444444
No 247
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.15 E-value=4.8e-08 Score=78.50 Aligned_cols=194 Identities=11% Similarity=0.095 Sum_probs=131.2
Q ss_pred eeecccCCCccEE-EEEe---CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcce
Q 040533 47 YSNMMDWGRNNIL-AIAL---GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKL 121 (364)
Q Consensus 47 ~~~~~~~~~~~~~-~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~ 121 (364)
+...+.+++++.+ .++. ++.|.++|..+++......+..+ .....+++. ++.|..+. .++.+.++|..+.+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 4567888885544 4332 47999999999998777665332 223345554 55555544 678999999999999
Q ss_pred eeeeecC-CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc-c---CcEEEEEEcCCCCEEEEEeCCCe
Q 040533 122 IRNLEGH-DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH-T---AEVCGLKWSNEGNLLASGGDDNL 196 (364)
Q Consensus 122 ~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~---~~v~~~~~~~~~~~l~~~~~d~~ 196 (364)
+.++... ... ..+++ +++.++++..++.|.++|..+.+.......+. . ..++.+.|. ++...+....++.
T Consensus 99 ~~~i~~g~~~g---~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 99 IKNFTHQMKDG---WGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEEECCSSSC---CEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEECCCCCe---EEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence 9888643 222 33555 66666666678899999998766433322221 1 236788888 6755555556789
Q ss_pred EEEEeCCCCCCCcceEEeccc-------------ccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC
Q 040533 197 VHVWDHSKMSSSKCLHRFRDH-------------RAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 253 (364)
|.+.|..+++ .+..+... ......++|+|+++.+++++. ..+.+...++...
T Consensus 174 V~vID~~tg~---V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk--~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 174 IARISAKDGT---LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK--LWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTCC---EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET--TCSEEEEEEEEEC
T ss_pred EEEEECCCCc---EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC--CCCeEEEEEEecc
Confidence 9999987754 34444321 124589999999999999986 7888988887653
No 248
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.15 E-value=4.6e-08 Score=88.62 Aligned_cols=283 Identities=11% Similarity=0.056 Sum_probs=169.6
Q ss_pred ccEEEEEe-CCeEEEEEC-CCCceeeeeeecCCCC--------C-ceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee
Q 040533 56 NNILAIAL-GLELYLWKQ-ENGEVQKLLKVTGEDD--------F-PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN 124 (364)
Q Consensus 56 ~~~~~~~~-~~~i~iw~~-~~~~~~~~~~~~~~~~--------~-v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 124 (364)
+.+++.+. ++.|+-+|. .+++..=......... . -..++. ++..+++++.|+.|..+|.++|+.+..
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 34556666 789999999 8888643333221100 0 011233 356788888899999999999998876
Q ss_pred eecCCC----cEEE-EEeecCCCCEEEEeeC------CCcEEEEEcccCcceeeeeecccC-------------------
Q 040533 125 LEGHDK----RVAT-ASWNHWNGHILTSGSQ------DKSIINHDVRVSNNVTSRINAHTA------------------- 174 (364)
Q Consensus 125 ~~~~~~----~v~~-~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~------------------- 174 (364)
...... .+.+ .... ++ .+++++. ++.|..+|..+++...........
T Consensus 141 ~~~~~~~~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EECCCGGGTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred ecCCCCCccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 653220 1111 1111 44 4555544 789999999988754332111000
Q ss_pred ------------------cEEEEEEcCCCCEEEEEeCC----------------CeEEEEeCCCCCCCcceEEecc--cc
Q 040533 175 ------------------EVCGLKWSNEGNLLASGGDD----------------NLVHVWDHSKMSSSKCLHRFRD--HR 218 (364)
Q Consensus 175 ------------------~v~~~~~~~~~~~l~~~~~d----------------~~i~iwd~~~~~~~~~~~~~~~--~~ 218 (364)
....+++.++...++.+..+ +.|..+|.++++. +-.++. |.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~---~W~~~~~~~d 294 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA---KWGYQKTPHD 294 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE---EEEEESSTTC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE---EEEecCCCCc
Confidence 00134566665666666532 3588899876543 433332 11
Q ss_pred --------cceeEEEEccCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecCC--------------Ce---------
Q 040533 219 --------AAVKALAWCPYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA--------------QI--------- 265 (364)
Q Consensus 219 --------~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~--------------~v--------- 265 (364)
.++. +....+++ .+++.+. .+|.+.++|..+++.+....... ++
T Consensus 295 ~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~ 371 (571)
T 2ad6_A 295 EWDFAGVNQMVL-TDQPVNGKMTPLLSHID--RNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRM 371 (571)
T ss_dssp SSCCCCCCCCEE-EEEEETTEEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCT
T ss_pred ccccccCCCCEE-EecccCCcEEEEEEEeC--CCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCC
Confidence 1111 12223553 3555554 79999999999999887765332 11
Q ss_pred -----------------EEEEEcCCccceeeeccC-----------------Ccc--------------CCCCeEEEeeC
Q 040533 266 -----------------CGLEWNRHHKEILSGHGF-----------------SSS--------------GDGQKLCLWKY 297 (364)
Q Consensus 266 -----------------~~~~~~~~~~~l~~~~~~-----------------~~~--------------~~~~~i~i~d~ 297 (364)
..++++|+...+++.... ..+ ..++.|..||.
T Consensus 372 ~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~ 451 (571)
T 2ad6_A 372 DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL 451 (571)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT
T ss_pred CCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEEC
Confidence 235677776666654210 000 23689999999
Q ss_pred CCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 298 PHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
.+++.+.++... ..+....+...+..++.++.||.|+.||..+++.+..+..
T Consensus 452 ~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 452 TTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp TTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 999988776533 2233333333566788899999999999999998877653
No 249
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.12 E-value=5.9e-07 Score=76.24 Aligned_cols=240 Identities=5% Similarity=-0.057 Sum_probs=150.7
Q ss_pred ccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEE-ecCCcEEEEecCCcceeeeeecCC
Q 040533 51 MDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVG-YMASKLQLWDAETSKLIRNLEGHD 129 (364)
Q Consensus 51 ~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~ 129 (364)
.+..++..+..+....|+..++.......+. .....+..++|++....|... ...+.|..+++........+....
T Consensus 39 ~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~---~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 115 (349)
T 3v64_C 39 KALGPEPVLLFANRIDIRQVLPHRSEYTLLL---NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 115 (349)
T ss_dssp EESSSCCEEEEECBSCEEEECTTSCCEEEEE---CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred cccccCceeEeecccceEEEeCCCCeeEEee---cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCC
Confidence 3334455666777778988888776654333 223457899999866666554 467889999988665444333333
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEe-CC-CeEEEEeCCCCCC
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG-DD-NLVHVWDHSKMSS 207 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~iwd~~~~~~ 207 (364)
.....+++.+.++.++++-...+.|.+.++..... .......-.....++++|.+..|+... .. +.|..+++....
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~- 193 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG- 193 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-
Confidence 44567888874566666666678899999875432 222333345678999999665555544 34 778888865322
Q ss_pred CcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCc
Q 040533 208 SKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSS 285 (364)
Q Consensus 208 ~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~ 285 (364)
...+ ...-.....++++|++..++.+-. ..+.|..+|+........+.. ......+++. .+....+-.
T Consensus 194 ---~~~~~~~~~~~PnGla~d~~~~~lY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~---- 263 (349)
T 3v64_C 194 ---RRIIADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDW---- 263 (349)
T ss_dssp ---CEESCCSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEET----
T ss_pred ---cEEEEECCCCCcceEEEeCCCCEEEEEEC--CCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecC----
Confidence 2222 122345688999998878888765 678999999875433333322 2456777773 333333322
Q ss_pred cCCCCeEEEeeCCCCceeeecc
Q 040533 286 SGDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 286 ~~~~~~i~i~d~~~~~~~~~~~ 307 (364)
..+.|..++..+++....+.
T Consensus 264 --~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 264 --HTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp --TTTEEEEEETTTCCSCEEEE
T ss_pred --CCCeEEEEEccCCCccEEec
Confidence 26778888866666555544
No 250
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.12 E-value=3.5e-07 Score=78.74 Aligned_cols=249 Identities=5% Similarity=-0.056 Sum_probs=154.6
Q ss_pred CCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEE-ecCCcEEEEecCCcceeeeeecCCCcE
Q 040533 54 GRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVG-YMASKLQLWDAETSKLIRNLEGHDKRV 132 (364)
Q Consensus 54 ~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v 132 (364)
.+...+..+....|+.+++.+.....+. .....+..++|.+.+..|... ...+.|..++++.......+.......
T Consensus 85 ~~~~~l~~~~~~~I~~i~~~~~~~~~~~---~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p 161 (386)
T 3v65_B 85 GPEPVLLFANRIDIRQVLPHRSEYTLLL---NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP 161 (386)
T ss_dssp SSCCEEEEECBSCEEEECTTSCCCEEEE---CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCC
T ss_pred cccceeEeecCccceeeccCCCcEEEEe---cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCc
Confidence 3345666777788999998877654433 234458899999866655544 467889999987665444333333345
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEe-CC-CeEEEEeCCCCCCCcc
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG-DD-NLVHVWDHSKMSSSKC 210 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~iwd~~~~~~~~~ 210 (364)
..+++.+..+.++++-...+.|.+.++..... .............+++.|.+..|+... .. +.|..+++.....
T Consensus 162 ~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--- 237 (386)
T 3v65_B 162 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--- 237 (386)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---
T ss_pred cEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc---
Confidence 67888874556666666677888888764432 223333335678999998766665554 33 6788888653221
Q ss_pred eEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-CCCeEEEEEcCCccceeeeccCCccCCC
Q 040533 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDG 289 (364)
Q Consensus 211 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 289 (364)
.......-.....|+++|++..++++-. ..+.|..+|+........+.. ......+++.. +..+.+.. ..
T Consensus 238 ~~~~~~~~~~PnGlavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~-~~ly~td~------~~ 308 (386)
T 3v65_B 238 RIIADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVFE-DSLYWTDW------HT 308 (386)
T ss_dssp EEEECSSCSCEEEEEEEGGGTEEEEEET--TTTEEEEECTTSCSCEEEECSSCSSEEEEEEET-TEEEEEET------TT
T ss_pred EEEEECCCCCeeeEEEeCCCCEEEEEEC--CCCEEEEEeCCCCeeEEEEECCCCCceEEEEEC-CEEEEeeC------CC
Confidence 1112222345688999988878888765 678999999865433333332 24567777733 33333332 27
Q ss_pred CeEEEeeCCCCceeeeccccccceeEEee
Q 040533 290 QKLCLWKYPHMTKWGELQHQTSRILELSQ 318 (364)
Q Consensus 290 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 318 (364)
+.|..++..+++.+..+.........|++
T Consensus 309 ~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 309 KSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp TEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 78888887777666665433333344433
No 251
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.11 E-value=1.1e-07 Score=86.24 Aligned_cols=285 Identities=10% Similarity=0.049 Sum_probs=169.2
Q ss_pred ccEEEEEe-CCeEEEEEC-CCCceeeeeeecCCC---------CCceEEEEcCCCCE----EEEEecCCcEEEEecCCcc
Q 040533 56 NNILAIAL-GLELYLWKQ-ENGEVQKLLKVTGED---------DFPTSISWSQDAKT----LAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 56 ~~~~~~~~-~~~i~iw~~-~~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~----l~~~~~dg~i~iw~~~~~~ 120 (364)
+.+++++. ++.|+-+|. .+++..=........ .....++++|.+.. +++++.|+.|.-+|.++|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence 34556666 789999999 888864333322110 00123456444444 8888889999999999999
Q ss_pred eeeeeecCCC----cEEE-EEeecCCCCEEEEee------CCCcEEEEEcccCcceeeeeecccC---------------
Q 040533 121 LIRNLEGHDK----RVAT-ASWNHWNGHILTSGS------QDKSIINHDVRVSNNVTSRINAHTA--------------- 174 (364)
Q Consensus 121 ~~~~~~~~~~----~v~~-~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~~--------------- 174 (364)
.+........ .+.+ .... ++ .+++++ .+|.|+.+|.++++..-........
T Consensus 143 ~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 143 TVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred EEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 8876553220 1111 1111 44 455554 3789999999988754332211100
Q ss_pred ---------------------cE-EEEEEcCCCCEEEEEeCC----------------CeEEEEeCCCCCCCcceEEecc
Q 040533 175 ---------------------EV-CGLKWSNEGNLLASGGDD----------------NLVHVWDHSKMSSSKCLHRFRD 216 (364)
Q Consensus 175 ---------------------~v-~~~~~~~~~~~l~~~~~d----------------~~i~iwd~~~~~~~~~~~~~~~ 216 (364)
.+ ..+++.++..+++.+..+ +.|..+|.++++. +-.++.
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~---~W~~q~ 296 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA---KFGYQK 296 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE---EEEEES
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce---eeEeec
Confidence 00 134556666777777654 3788899876543 333332
Q ss_pred --cc--------cceeEEEEc-cCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecCC--------------Ce----
Q 040533 217 --HR--------AAVKALAWC-PYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA--------------QI---- 265 (364)
Q Consensus 217 --~~--------~~v~~~~~~-~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~--------------~v---- 265 (364)
|. .++. +... .+++ .+++.++ .+|.+.++|.++|+.+....... ++
T Consensus 297 ~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~ 373 (599)
T 1w6s_A 297 TPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD--RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPE 373 (599)
T ss_dssp STTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGG
T ss_pred CCCccccccCCCccEE-EeccccCCcEEEEEEEEC--CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccc
Confidence 21 1111 1221 3453 3455554 89999999999999887665321 11
Q ss_pred ----------------------EEEEEcCCccceeeecc------------------CC-------c--cC------CCC
Q 040533 266 ----------------------CGLEWNRHHKEILSGHG------------------FS-------S--SG------DGQ 290 (364)
Q Consensus 266 ----------------------~~~~~~~~~~~l~~~~~------------------~~-------~--~~------~~~ 290 (364)
..++++|+...+++... +. . .+ ..+
T Consensus 374 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G 453 (599)
T 1w6s_A 374 YGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLG 453 (599)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCE
T ss_pred cCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcC
Confidence 24566776665544210 00 0 01 358
Q ss_pred eEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 291 KLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 291 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
.|.-||+.+++.+.+.+.. .+...-.....+.+++.++.||.|+.||.++++.+.++..
T Consensus 454 ~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 454 QIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 8999999999988776422 1222112223566788899999999999999998877653
No 252
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.09 E-value=1.5e-08 Score=89.76 Aligned_cols=190 Identities=11% Similarity=0.082 Sum_probs=131.8
Q ss_pred CCCEEEEeeC-CCcEEEEEcccCcceeeeee-cccCcEEEEEE-c-CCCCEEEEEeC------------------CCeEE
Q 040533 141 NGHILTSGSQ-DKSIINHDVRVSNNVTSRIN-AHTAEVCGLKW-S-NEGNLLASGGD------------------DNLVH 198 (364)
Q Consensus 141 ~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~-~-~~~~~l~~~~~------------------d~~i~ 198 (364)
++++++.... +..|.+.|+.+.+. ...+. .....+..+++ + |++++++++++ ++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~-~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKC-DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEE-EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceE-eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 4556666554 55799999998764 33222 22345788888 5 89999988852 35788
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCC-----------------------------------C
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQD-----------------------------------G 243 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-----------------------------------~ 243 (364)
+.|..+. +...++.-. +....++++|+|+++++++..+.. +
T Consensus 179 vID~~t~---~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 179 AVDADKW---EVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEETTTT---EEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEECCCC---eEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 9997653 334444321 234678899999888887742211 2
Q ss_pred eEEEEECCC--CeE-EEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc------------eeeeccc
Q 040533 244 CIKIWNVQK--GTC-IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT------------KWGELQH 308 (364)
Q Consensus 244 ~i~i~d~~~--~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~------------~~~~~~~ 308 (364)
.|.+.|.++ ++. +..+.......++.++|||++++++. ..++.|.++|+.+.+ ...++..
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~-----~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAG-----KLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEEC-----TTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeC-----CCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 478888887 555 66777777788999999999998875 348899999998653 2333332
Q ss_pred cccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 309 QTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
......++|+|+|...++.-.|+.|.+||+..
T Consensus 330 -G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 330 -GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp -CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred -CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 23468899999994444556799999999987
No 253
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.09 E-value=2e-06 Score=81.58 Aligned_cols=269 Identities=11% Similarity=0.066 Sum_probs=172.0
Q ss_pred eecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeec-----CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 48 SNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVT-----GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+.++..++++ +..++. +.|.+||..+++........ -....|.++...++|. |..|+.++-|..|+..++..
T Consensus 265 i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~ 342 (795)
T 4a2l_A 265 IRSLAMDSQNRLWIGTF-NDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRF 342 (795)
T ss_dssp EEEEEECTTSCEEEEES-SCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSS
T ss_pred EEEEEEcCCCCEEEEeC-ChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccc
Confidence 5555555544 444544 47899998887654432211 1235799999998887 55677777799998765543
Q ss_pred eeeee------cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee--------cccCcEEEEEEcCCCCE
Q 040533 122 IRNLE------GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN--------AHTAEVCGLKWSNEGNL 187 (364)
Q Consensus 122 ~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~ 187 (364)
..... .....|.++...+ ++. |..|+.++-|..||..++.. ..... .....|.++...++++.
T Consensus 343 ~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~ 419 (795)
T 4a2l_A 343 KNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPITQRF-TSYTLQEDESARGIGSNNIKAVYVDEKKSL 419 (795)
T ss_dssp EEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCEEEECTTTCCE-EEECCC------CCSCSCEEEEEEETTTTE
T ss_pred eEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCeEEEcCCCCcE-EEEecCCCCcccCCCCccEEEEEEcCCCCE
Confidence 22111 1245689998876 555 55577777799999775542 11111 12357899998888875
Q ss_pred EEEEeCCCeEEEEeCCCCCCCcceEEec-----ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec-
Q 040533 188 LASGGDDNLVHVWDHSKMSSSKCLHRFR-----DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT- 261 (364)
Q Consensus 188 l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~- 261 (364)
|..|+.++-|..+|..+.. ...+. .....|.++...+++...+.+ . +-+.+||..+++.......
T Consensus 420 lWigt~~~Gl~~~d~~~~~----~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt----~-~Gl~~~~~~~~~~~~~~~~~ 490 (795)
T 4a2l_A 420 VYIGTHAGGLSILHRNSGQ----VENFNQRNSQLVNENVYAILPDGEGNLWLGT----L-SALVRFNPEQRSFTTIEKEK 490 (795)
T ss_dssp EEEEETTTEEEEEETTTCC----EEEECTTTSCCSCSCEEEEEECSSSCEEEEE----S-SCEEEEETTTTEEEECCBCT
T ss_pred EEEEeCcCceeEEeCCCCc----EEEeecCCCCcCCCeeEEEEECCCCCEEEEe----c-CceeEEeCCCCeEEEccccc
Confidence 6777877779999976532 22222 124568899888877433332 3 4588999887765432211
Q ss_pred ------CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-------ccccceeEEeecCCCCEEEEE
Q 040533 262 ------KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-------HQTSRILELSQSPDGLTVVSA 328 (364)
Q Consensus 262 ------~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~ 328 (364)
...|.++...++|...+.+ .+.+..||..+++. .+. .....|.++..+++|.+.++.
T Consensus 491 ~~~~~~~~~i~~i~~d~~g~lWigt--------~~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT 560 (795)
T 4a2l_A 491 DGTPVVSKQITTLFRDSHKRLWIGG--------EEGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT 560 (795)
T ss_dssp TCCBCCCCCEEEEEECTTCCEEEEE--------SSCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE
T ss_pred cccccCCceEEEEEECCCCCEEEEe--------CCceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe
Confidence 2468899999999877655 35688888776554 221 134568999999999866544
Q ss_pred eCCCcEEEEEeeCC
Q 040533 329 AADETLRFWEAFGP 342 (364)
Q Consensus 329 ~~dg~i~vw~~~~~ 342 (364)
. . .|..||..+.
T Consensus 561 ~-~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 561 R-E-GFYCFNEKDK 572 (795)
T ss_dssp S-S-CEEEEETTTT
T ss_pred C-C-CceeECCCCC
Confidence 3 3 5777876543
No 254
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.09 E-value=1.9e-06 Score=72.04 Aligned_cols=233 Identities=6% Similarity=-0.065 Sum_probs=145.3
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEE-ecCCcEEEEecCC----cceeeeeecCCCcE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVG-YMASKLQLWDAET----SKLIRNLEGHDKRV 132 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~----~~~~~~~~~~~~~v 132 (364)
+|..+....|+..|+.+.+...+. .....+..++|++++..|..+ ..++.|..+++.. ......+...-...
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~---~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEECCCeEEEEECCCcceEehh---cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 455666778999999887654443 234567899999876655554 4568899999876 22222232222445
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCCCCcc
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD--NLVHVWDHSKMSSSKC 210 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~ 210 (364)
..+++.+.+++++++-...+.|.+.++..... .............+++.|.+..|+.+... +.|...++... .
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~--- 154 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-D--- 154 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-C---
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCce-EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-C---
Confidence 78888863555666666778999999874432 22233333567899999966666555543 67888886532 1
Q ss_pred eEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec---CCCeEEEEEcCCccceeeeccCCcc
Q 040533 211 LHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT---KAQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 211 ~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
...+ ...-.....+++++++..++.+-. ..+.|..+|+........... ......+++.. +....+-.
T Consensus 155 ~~~~~~~~~~~P~gla~d~~~~~lY~~D~--~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~~ly~~d~----- 226 (316)
T 1ijq_A 155 IYSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDI----- 226 (316)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEET-----
T ss_pred eEEEEECCCCCceEEEEeccCCEEEEEEC--CCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-CEEEEEEC-----
Confidence 2222 122345679999998878888765 678999999975333222222 23467777753 33333332
Q ss_pred CCCCeEEEeeCCCCceeeecc
Q 040533 287 GDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 287 ~~~~~i~i~d~~~~~~~~~~~ 307 (364)
..+.|..++..+++.+..+.
T Consensus 227 -~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 227 -INEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp -TTTEEEEEETTTCCCCEEEE
T ss_pred -CCCeEEEEeCCCCcceEEEe
Confidence 27889999887776655553
No 255
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=99.06 E-value=5.1e-06 Score=71.83 Aligned_cols=247 Identities=5% Similarity=-0.090 Sum_probs=155.3
Q ss_pred CccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCc----ceeeeeecCC
Q 040533 55 RNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETS----KLIRNLEGHD 129 (364)
Q Consensus 55 ~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~----~~~~~~~~~~ 129 (364)
+..++..+....|+..++.......+. .....+..++|++.+..|.... ..+.|+.+++... .....+....
T Consensus 82 ~~~~ll~~~~~~I~~i~l~~~~~~~~~---~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 82 SIAYLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp TSCEEEEEETTEEEEECTTSCSCEEEE---CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred ccceeEEeccceeEEEccCCcceeEec---cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 445777778899999999877654443 3356788999998666665554 5678999988652 2233333344
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCC
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD--DNLVHVWDHSKMSS 207 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~ 207 (364)
.....+++.+..++++++-...+.|.+.+++.... ...+.........+++.|.+..|+.... .+.|...++.....
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~-~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 237 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE-EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCce-EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence 56788888874566666666778899999875442 3333333455789999996666665542 36788888753221
Q ss_pred CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec---CCCeEEEEEcCCccceeeeccCC
Q 040533 208 SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT---KAQICGLEWNRHHKEILSGHGFS 284 (364)
Q Consensus 208 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~ 284 (364)
.......-.....|++++++..++.+-. ..+.|..+|+........... -....++++..+ .++...
T Consensus 238 ---~~~~~~~l~~P~glavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~--~lywtd--- 307 (400)
T 3p5b_L 238 ---YSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTD--- 307 (400)
T ss_dssp ---EEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETT--EEEEEE---
T ss_pred ---EEEEECCCCceEEEEEEeCCCEEEEEEC--CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCC--EEEEec---
Confidence 1122222356789999998878888765 678999999875443333332 134567776433 333322
Q ss_pred ccCCCCeEEEeeCCCCceeeeccccccceeEEe
Q 040533 285 SSGDGQKLCLWKYPHMTKWGELQHQTSRILELS 317 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~ 317 (364)
...+.|..+|..+++.+..+.........+.
T Consensus 308 --~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 308 --IINEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp --SSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred --CCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 2267888888777777666654333344443
No 256
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.05 E-value=3.8e-07 Score=82.77 Aligned_cols=286 Identities=12% Similarity=0.075 Sum_probs=167.5
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCC-------ceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDF-------PTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-------v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 128 (364)
+.+++++.++.|+-+|..+++..=.......... ...++. .+..+++++.++.|.-+|.++|+.+......
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 3455555546699999999986544433221110 012222 3567888888999999999999988776533
Q ss_pred CC----cEE-EEEeec--CCCC-EEEEee------CCCcEEEEEcccCcceeeeeecccCc-------------------
Q 040533 129 DK----RVA-TASWNH--WNGH-ILTSGS------QDKSIINHDVRVSNNVTSRINAHTAE------------------- 175 (364)
Q Consensus 129 ~~----~v~-~~~~~~--~~~~-~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~~~------------------- 175 (364)
.. .+. ...... .+++ .+++++ .++.|..+|..+++..... ......
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~-~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR-PFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE-ESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec-CCCccccccccCccccccccccccc
Confidence 21 111 111111 0122 566654 3788999999887754322 110000
Q ss_pred ----------------------EEEEEEcCCCCEEEEEeC--------------------C----CeEEEEeCCCCCCCc
Q 040533 176 ----------------------VCGLKWSNEGNLLASGGD--------------------D----NLVHVWDHSKMSSSK 209 (364)
Q Consensus 176 ----------------------v~~~~~~~~~~~l~~~~~--------------------d----~~i~iwd~~~~~~~~ 209 (364)
-..+++.|+..+++.+.. | +.|..+|.++++.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~-- 303 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV-- 303 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE--
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE--
Confidence 012456666667776653 2 5799999877543
Q ss_pred ceEEecc--ccc----ceeE-EEEc---cCCC--cEEEeecCCCCCeEEEEECCCCeEEEEEecCCCe------------
Q 040533 210 CLHRFRD--HRA----AVKA-LAWC---PYQF--NVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQI------------ 265 (364)
Q Consensus 210 ~~~~~~~--~~~----~v~~-~~~~---~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v------------ 265 (364)
+-.++. |.. .+.. +.+. .+++ .+++.++ .+|.++++|..+|+.+..+.....+
T Consensus 304 -~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~ 380 (582)
T 1flg_A 304 -KWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHAD--RNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGR 380 (582)
T ss_dssp -EEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCC
T ss_pred -EEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEEC--CCceEEEEECCCCCEecccccccCccccccccccCCC
Confidence 444322 211 0111 1122 3453 3555554 8999999999999998776543210
Q ss_pred ----------------------------------EEEEEcCCccceeeecc------------------CC---------
Q 040533 266 ----------------------------------CGLEWNRHHKEILSGHG------------------FS--------- 284 (364)
Q Consensus 266 ----------------------------------~~~~~~~~~~~l~~~~~------------------~~--------- 284 (364)
..++++|+...+++... +.
T Consensus 381 p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~ 460 (582)
T 1flg_A 381 PVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRM 460 (582)
T ss_dssp EEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEES
T ss_pred EeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCC
Confidence 13455665555544321 00
Q ss_pred ccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCCcceec
Q 040533 285 SSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 285 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 350 (364)
.....+.|.-||+.+++.+.+..... ++..-.....+.+++.++.||.++.||.++++.+..+..
T Consensus 461 ~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 461 YDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 01236889999999999887765432 222222223466888899999999999999998877764
No 257
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.05 E-value=3.3e-06 Score=80.06 Aligned_cols=272 Identities=12% Similarity=0.111 Sum_probs=172.1
Q ss_pred eecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeec-----CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 48 SNMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVT-----GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 48 ~~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+.++...++ .+.+++.++.|..||..+++........ -....|.++...++|.+. .|+.+ -|.+|+..+++.
T Consensus 217 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~ 294 (795)
T 4a2l_A 217 IQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSF 294 (795)
T ss_dssp EEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEE
T ss_pred eEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeE
Confidence 334443333 4555655667999998877654332210 124569999998888744 45555 589999877654
Q ss_pred eeeeec-------CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee-------cccCcEEEEEEcCCCCE
Q 040533 122 IRNLEG-------HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN-------AHTAEVCGLKWSNEGNL 187 (364)
Q Consensus 122 ~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~ 187 (364)
...... ....|.++...+ ++. |..|+.++-|..++.....- ..+. .....|.++...++|.
T Consensus 295 ~~~~~~~~~~~~l~~~~i~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~l~~~~V~~i~~d~~g~- 369 (795)
T 4a2l_A 295 ASYSSNPVENGSLSQRSVRSIFMDS-QGG-MWLGTYFGGLNYYHPIRNRF--KNIRNIPYKNSLSDNVVSCIVEDKDKN- 369 (795)
T ss_dssp EEECCCTTSTTSCSSSCEEEEEECT-TSC-EEEEESSSCEEEECGGGGSS--EEECCCTTSSSCSCSSEEEEEECTTSC-
T ss_pred EEEecCCCCCCCCCCCcEEEEEEeC-CcC-EEEEECCCCeEEeCCCcccc--eEEcCCCCCCCCCCCeeEEEEECCCCC-
Confidence 332211 235799998876 665 55677777788898765431 1111 1235699999888876
Q ss_pred EEEEeCCCeEEEEeCCCCCCCcceEEec---------ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEE
Q 040533 188 LASGGDDNLVHVWDHSKMSSSKCLHRFR---------DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHS 258 (364)
Q Consensus 188 l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~ 258 (364)
|..|+.++-|..||..+.. ...+. .....|.++...+++..+.+ |. .++-|..||..+++....
T Consensus 370 lWiGt~~~Gl~~~~~~~~~----~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi-gt--~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQR----FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI-GT--HAGGLSILHRNSGQVENF 442 (795)
T ss_dssp EEEEESSSCEEEECTTTCC----EEEECCC------CCSCSCEEEEEEETTTTEEEE-EE--TTTEEEEEETTTCCEEEE
T ss_pred EEEEECCCCeEEEcCCCCc----EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE-Ee--CcCceeEEeCCCCcEEEe
Confidence 5557777679999865432 22221 11356889988888741443 22 456799999988764433
Q ss_pred Ee-----cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc------ccccceeEEeecCCCCEEEE
Q 040533 259 VD-----TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ------HQTSRILELSQSPDGLTVVS 327 (364)
Q Consensus 259 ~~-----~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~------~~~~~i~~i~~~~~~~~l~~ 327 (364)
.. ....|.++...++|...+.+ .+.+..||..+++...... .....|.++...++|.+.+.
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt--------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 514 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGT--------LSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG 514 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEE--------SSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEe--------cCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE
Confidence 21 13468899999888877654 3568889987765432221 12357899999999986665
Q ss_pred EeCCCcEEEEEeeCCC
Q 040533 328 AAADETLRFWEAFGPS 343 (364)
Q Consensus 328 ~~~dg~i~vw~~~~~~ 343 (364)
.. +.|..|+..+.+
T Consensus 515 t~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 515 GE--EGLSVFKQEGLD 528 (795)
T ss_dssp ES--SCEEEEEEETTE
T ss_pred eC--CceEEEeCCCCe
Confidence 44 568888887654
No 258
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.05 E-value=1.1e-07 Score=74.95 Aligned_cols=195 Identities=11% Similarity=0.050 Sum_probs=128.0
Q ss_pred CcEEeeCCCCCCCcceeecccCCCccEEEEEeC---CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEE-Eec
Q 040533 32 KEARILDAPNLRNDYYSNMMDWGRNNILAIALG---LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAV-GYM 107 (364)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~ 107 (364)
....+++...+....+...+.|+++.++.++.. ..|+.+|+.+++......+.. ........++++.|.. .-.
T Consensus 7 ~~~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~---~~fgeGi~~~~~~ly~ltw~ 83 (243)
T 3mbr_X 7 QGYRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPP---PYFGAGIVAWRDRLIQLTWR 83 (243)
T ss_dssp CCEEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCT---TCCEEEEEEETTEEEEEESS
T ss_pred cceEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCC---CcceeEEEEeCCEEEEEEee
Confidence 334555544555666788888888666555443 489999999999877776543 2332323333454544 446
Q ss_pred CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec--cc---CcEEEEEEc
Q 040533 108 ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA--HT---AEVCGLKWS 182 (364)
Q Consensus 108 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~---~~v~~~~~~ 182 (364)
++.+.+||.++.+.+.++...... ..++ + ++..|+.+..++.|.++|..+.+. ...+.. +. ..++.+.|.
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~-dg~~L~vSdgs~~l~~iDp~t~~~-~~~I~V~~~g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPGEG-WALT--S-DDSHLYMSDGTAVIRKLDPDTLQQ-VGSIKVTAGGRPLDNLNELEWV 158 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSSCC-CEEE--E-CSSCEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE
T ss_pred CCEEEEEECCcCcEEEEEeCCCCc-eEEe--e-CCCEEEEECCCCeEEEEeCCCCeE-EEEEEEccCCcccccceeeEEe
Confidence 889999999999999998854333 4454 4 666666666688999999987764 333322 11 345677765
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc-------------cccceeEEEEccCCCcEEEeec
Q 040533 183 NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD-------------HRAAVKALAWCPYQFNVLASGG 238 (364)
Q Consensus 183 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~ 238 (364)
+|+..+..-.+..|.+.|..+++. +..+.. ...-.+.|+++|+++.++++|-
T Consensus 159 -~G~lyanvw~s~~I~vIDp~tG~V---~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 159 -NGELLANVWLTSRIARIDPASGKV---VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp -TTEEEEEETTTTEEEEECTTTCBE---EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred -CCEEEEEECCCCeEEEEECCCCCE---EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 666555555677899999776543 333321 1234578999999989999873
No 259
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.04 E-value=2.9e-06 Score=70.90 Aligned_cols=236 Identities=11% Similarity=0.016 Sum_probs=145.7
Q ss_pred EEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccC---cceeeeeecccCcEE
Q 040533 101 TLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVS---NNVTSRINAHTAEVC 177 (364)
Q Consensus 101 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~~v~ 177 (364)
+|+.+. ...|+..|+.+.+....+. .......++|++.++.++++-..++.|..+++... ......+........
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 455554 3569999998876655544 44567899999844555556566789999998751 211222222223457
Q ss_pred EEEEcCCCC-EEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEE
Q 040533 178 GLKWSNEGN-LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCI 256 (364)
Q Consensus 178 ~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 256 (364)
.+++.+.+. +.++-...+.|.+.|+..... .............++++|.+..++.+..+ ..+.|...++.. ...
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~---~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG-~~~ 155 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---KTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG-VDI 155 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSE---EEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS-CCE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCce---EEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCC-CCe
Confidence 889987544 444545678999999764211 11122233457899999977777777541 237899888854 333
Q ss_pred EEE-e-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec-c--ccccceeEEeecCCCCEEEEEeCC
Q 040533 257 HSV-D-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL-Q--HQTSRILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 257 ~~~-~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-~--~~~~~i~~i~~~~~~~~l~~~~~d 331 (364)
..+ . .-.....+++++++..|+.+. ...+.|..+|+.... ...+ . ........+++. .+.++++-...
T Consensus 156 ~~~~~~~~~~P~gla~d~~~~~lY~~D-----~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~ 228 (316)
T 1ijq_A 156 YSLVTENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIIN 228 (316)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTT
T ss_pred EEEEECCCCCceEEEEeccCCEEEEEE-----CCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCC
Confidence 333 2 224578999999887777664 236789999986432 2222 1 122345677875 35555555667
Q ss_pred CcEEEEEeeCCCCCcceec
Q 040533 332 ETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 332 g~i~vw~~~~~~~~~~~~~ 350 (364)
+.|..++..+++....+..
T Consensus 229 ~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 229 EAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp TEEEEEETTTCCCCEEEEC
T ss_pred CeEEEEeCCCCcceEEEec
Confidence 8898888777776655543
No 260
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.04 E-value=2.6e-07 Score=73.35 Aligned_cols=189 Identities=12% Similarity=0.161 Sum_probs=124.2
Q ss_pred ceeeeeecCCCc--EEEEEeecCCCCEEEEeeCCC--cEEEEEcccCcceeeeeecccCcE--EEEEEcCCCCEEEEEe-
Q 040533 120 KLIRNLEGHDKR--VATASWNHWNGHILTSGSQDK--SIINHDVRVSNNVTSRINAHTAEV--CGLKWSNEGNLLASGG- 192 (364)
Q Consensus 120 ~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~- 192 (364)
+.++++. |... ...+.|+ ++.++.+.+.+| .|+.+|+.+++.. ...... ... ..++. ++..|....
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~-~~~~l~-~~~FgeGit~--~g~~ly~ltw 104 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTL-QQIELG-KRYFGEGISD--WKDKIVGLTW 104 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEE-EEEECC-TTCCEEEEEE--ETTEEEEEES
T ss_pred EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEE-EEEecC-CccceeEEEE--eCCEEEEEEe
Confidence 3455564 5443 4778887 567777777766 8999999988753 333222 223 23444 344555444
Q ss_pred CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC------CCeE
Q 040533 193 DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK------AQIC 266 (364)
Q Consensus 193 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~------~~v~ 266 (364)
.++.+.+||..+.+ .+.++.... ....+++++..++++.+ ++.|.++|..+.+.+..+... ..++
T Consensus 105 ~~~~v~v~D~~t~~---~~~ti~~~~---eG~glt~dg~~L~~SdG---s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 105 KNGLGFVWNIRNLR---QVRSFNYDG---EGWGLTHNDQYLIMSDG---TPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp SSSEEEEEETTTCC---EEEEEECSS---CCCCEEECSSCEEECCS---SSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred eCCEEEEEECccCc---EEEEEECCC---CceEEecCCCEEEEECC---CCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 68899999977654 355554322 22233456777888653 678999999999998887652 2345
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc------------ccceeEEeecCCCCEEEEEeCC
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ------------TSRILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~------------~~~i~~i~~~~~~~~l~~~~~d 331 (364)
.+.|. +|+..+.. -.++.|.+.|..+++.+..+... ....+.|+|+|+++.|+..+..
T Consensus 176 ELe~~-~G~lyan~------w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 176 ELEWV-DGEIFANV------WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEE-TTEEEEEE------TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred eeEEE-CCEEEEEE------ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 67776 66544333 23789999999999988776532 1245889999998877777653
No 261
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.01 E-value=2.1e-07 Score=73.89 Aligned_cols=178 Identities=15% Similarity=0.219 Sum_probs=119.9
Q ss_pred CceEEEEcCCCCEEEEEecCC--cEEEEecCCcceeeeeecCCCcEE--EEEeecCCCCEEEEeeCCCcEEEEEcccCcc
Q 040533 89 FPTSISWSQDAKTLAVGYMAS--KLQLWDAETSKLIRNLEGHDKRVA--TASWNHWNGHILTSGSQDKSIINHDVRVSNN 164 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 164 (364)
....+.|+ ++.+..+.+.+| .|+++|+++++.+..+.... ... .++.. ++.+.+..-.++.+.+||..+.+.
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence 34788998 666666666666 89999999999998876433 332 34442 445555555688999999988775
Q ss_pred eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc--cc---cceeEEEEccCCCcEEEeecC
Q 040533 165 VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD--HR---AAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~~~~~~~g 239 (364)
+..+.... .-..+ +++++.|+.+..++.|.++|..+.+. +..+.- .. ..++.+.|. +| .+++..-
T Consensus 120 -~~ti~~~~-eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v---~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w- 189 (262)
T 3nol_A 120 -VRSFNYDG-EGWGL--THNDQYLIMSDGTPVLRFLDPESLTP---VRTITVTAHGEELPELNELEWV-DG-EIFANVW- 189 (262)
T ss_dssp -EEEEECSS-CCCCE--EECSSCEEECCSSSEEEEECTTTCSE---EEEEECEETTEECCCEEEEEEE-TT-EEEEEET-
T ss_pred -EEEEECCC-CceEE--ecCCCEEEEECCCCeEEEEcCCCCeE---EEEEEeccCCccccccceeEEE-CC-EEEEEEc-
Confidence 44443322 11233 35677777766678899999776543 444332 11 234457776 55 5666654
Q ss_pred CCCCeEEEEECCCCeEEEEEecC-------------CCeEEEEEcCCccceeeec
Q 040533 240 TQDGCIKIWNVQKGTCIHSVDTK-------------AQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 240 ~~d~~i~i~d~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~ 281 (364)
.++.|.+.|.++++.+..+... .-.+.++++|+++.|++..
T Consensus 190 -~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 190 -QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp -TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred -cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 6889999999999999998653 2358899999877766653
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.00 E-value=5.6e-07 Score=81.55 Aligned_cols=259 Identities=12% Similarity=0.073 Sum_probs=153.1
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCC--CCce-EEEEcCCCCEEEEEec------CCcEEEEecCCcceeeeee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGED--DFPT-SISWSQDAKTLAVGYM------ASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~--~~v~-~~~~s~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~ 126 (364)
+.+++++.++.|+.+|..+++..-......+. ..+. .... .+..+++++. +|.|..+|.++|+.+..+.
T Consensus 116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 34666667899999999999875444432211 0111 1111 2345666654 7899999999999887765
Q ss_pred cCCCc-------------------------------------E-EEEEeecCCCCEEEEeeCC----------------C
Q 040533 127 GHDKR-------------------------------------V-ATASWNHWNGHILTSGSQD----------------K 152 (364)
Q Consensus 127 ~~~~~-------------------------------------v-~~~~~~~~~~~~l~~~~~d----------------g 152 (364)
..... + ..+++.+ ....++.+..+ +
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCccCCCceeEE
Confidence 32211 0 1245666 45556555432 2
Q ss_pred cEEEEEcccCcceeeeeec-c--------cCcEEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCCCCcceEEecccc--
Q 040533 153 SIINHDVRVSNNVTSRINA-H--------TAEVCGLKWSNEGN---LLASGGDDNLVHVWDHSKMSSSKCLHRFRDHR-- 218 (364)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~-~--------~~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-- 218 (364)
.|..+|.++++........ | ..++. +....+|+ .++.++.+|.++++|..+++. +.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---~w~~~~~~~~ 348 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNL---IVAEKVDPAV 348 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCE---EEEEESSTTC
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCE---EeeecccCCc
Confidence 5889999887753332211 1 12222 22224663 577788899999999876532 32221100
Q ss_pred -----------cce--------------------------eEEEEccCCCcEEEeec-----------------------
Q 040533 219 -----------AAV--------------------------KALAWCPYQFNVLASGG----------------------- 238 (364)
Q Consensus 219 -----------~~v--------------------------~~~~~~~~~~~~~~~~~----------------------- 238 (364)
.++ ..++++|+...+++...
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 428 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT 428 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence 011 24567777655544321
Q ss_pred --------C---CCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc
Q 040533 239 --------G---TQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 239 --------g---~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 307 (364)
+ ..++.|..||+.+++.+..+.....+....+...+..++.+. .++.|+.+|.++++.+.+++
T Consensus 429 ~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~------~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYAT------LDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC------TTSEEEEEETTTCCEEEEEE
T ss_pred ceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEc------CCCeEEEEECCCCCEEEEEe
Confidence 0 135899999999999988887655444433333445555553 39999999999999998876
Q ss_pred ccccc-eeEEeecCCCCEEEE
Q 040533 308 HQTSR-ILELSQSPDGLTVVS 327 (364)
Q Consensus 308 ~~~~~-i~~i~~~~~~~~l~~ 327 (364)
..... -.-+.+..+|+.++.
T Consensus 503 ~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 503 MPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp CSSCCCSCCEEEEETTEEEEE
T ss_pred CCCCcEeeeEEEEECCEEEEE
Confidence 43321 122345567764443
No 263
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.99 E-value=1.9e-06 Score=71.98 Aligned_cols=238 Identities=12% Similarity=0.048 Sum_probs=146.0
Q ss_pred EEEEEecCCcEEEEecCCcc--eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEE
Q 040533 101 TLAVGYMASKLQLWDAETSK--LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCG 178 (364)
Q Consensus 101 ~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~ 178 (364)
+|+.+. ...|+..+++... ....+. .......++|++.++.++.+-...+.|..+++.............-.....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 455543 4679999988663 222222 224567899998455566666677889999987653212222222244667
Q ss_pred EEEcCC-CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE
Q 040533 179 LKWSNE-GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH 257 (364)
Q Consensus 179 ~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~ 257 (364)
+++.+. ++++++-...+.|.++++..... .............++++|.+..++.+-.+ ..+.|...++.......
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~~~~ 159 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLR---KVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFI 159 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCSCEE
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcE---EEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCCeEE
Confidence 888874 44555555677899999764221 11122334456899999977677776521 35789999886433222
Q ss_pred EEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEE
Q 040533 258 SVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRF 336 (364)
Q Consensus 258 ~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~v 336 (364)
.... -.....+++++++..|+.+. ...+.|..+|+..................+++.. +.++.+-...+.|..
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD-----~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~ 233 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWAD-----AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILA 233 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EEECCCCCccEEEEeccCCEEEEEE-----CCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence 2222 24578999999877777664 2378899999864333222222334556777753 344555556788998
Q ss_pred EEeeCCCCCcceec
Q 040533 337 WEAFGPSGSGDFVS 350 (364)
Q Consensus 337 w~~~~~~~~~~~~~ 350 (364)
++..+++....+..
T Consensus 234 ~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 234 CNKYTGEGLREIHS 247 (318)
T ss_dssp EETTTCCSCEEEEC
T ss_pred EECCCCCceEEEeC
Confidence 98877776655543
No 264
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.97 E-value=8.8e-06 Score=70.32 Aligned_cols=247 Identities=11% Similarity=0.014 Sum_probs=153.6
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc---ceeeeeecccCcE
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN---NVTSRINAHTAEV 176 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~v 176 (364)
.+|+.+. ...|+..++........+. ....+..++|++.++.++.+-...+.|..+++.... .............
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 3555553 5789999988765544443 456788999998445555555567889888886521 1122333334567
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 177 CGLKWSNE-GNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 177 ~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
..+++.+. +++.++-...+.|.+.++..... ...+.........|+++|.+..++.+-.+ ..+.|...++.....
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~---~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---KTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDI 237 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSE---EEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTSCSC
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCce---EEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCCCcc
Confidence 88999884 44555555678899998764321 22222233457899999977778777531 347899999865443
Q ss_pred EEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc--cccceeEEeecCCCCEEEEEeCCC
Q 040533 256 IHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH--QTSRILELSQSPDGLTVVSAAADE 332 (364)
Q Consensus 256 ~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg 332 (364)
...+... .....|++++++..|+.+. ...+.|..+|+........... .......+++. .+.++.+-...+
T Consensus 238 ~~~~~~~l~~P~glavd~~~~~lY~aD-----~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 238 YSLVTENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred EEEEECCCCceEEEEEEeCCCEEEEEE-----CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 3333333 5678999999888777764 2367899999865433222221 22345577773 334555556678
Q ss_pred cEEEEEeeCCCCCcceeccCCceeee
Q 040533 333 TLRFWEAFGPSGSGDFVSHLDGLLSL 358 (364)
Q Consensus 333 ~i~vw~~~~~~~~~~~~~~~~~v~~~ 358 (364)
.|..++..+++....+........++
T Consensus 312 ~V~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 312 AIFSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp SEEEEESSSCCCCEEEECSCSCEEEE
T ss_pred eEEEEEcCCCCceEEEecCCCCCceE
Confidence 89999977787776665443334444
No 265
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.97 E-value=3.1e-07 Score=72.94 Aligned_cols=190 Identities=13% Similarity=0.103 Sum_probs=125.1
Q ss_pred ceeeeeecCCCc--EEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeE
Q 040533 120 KLIRNLEGHDKR--VATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLV 197 (364)
Q Consensus 120 ~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 197 (364)
+.+.++. |... ...+.|+ ++.++.+.+.+|.|+++|+.+++..... .....--..+++.. +++.+..-.++.+
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEE
T ss_pred EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEE
Confidence 3445554 4433 4678886 5677888888899999999988754443 22221223455543 2444445578899
Q ss_pred EEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC------CCeEEEEEc
Q 040533 198 HVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK------AQICGLEWN 271 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~------~~v~~~~~~ 271 (364)
.+||..+. +.+.++... ..-..++ +++..++++.+ ++.|.++|..+.+.+..+... ..++.+.|.
T Consensus 119 ~V~D~~Tl---~~~~ti~~~-~eGwGLt--~Dg~~L~vSdG---s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 119 FTWSGMPP---QRERTTRYS-GEGWGLC--YWNGKLVRSDG---GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA 189 (268)
T ss_dssp EEEETTTT---EEEEEEECS-SCCCCEE--EETTEEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred EEEECCcC---cEEEEEeCC-CceeEEe--cCCCEEEEECC---CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe
Confidence 99997764 345555432 2223444 45667777753 789999999999998887642 245677877
Q ss_pred CCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc-------------ccceeEEeecCCCCEEEEEeC
Q 040533 272 RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-------------TSRILELSQSPDGLTVVSAAA 330 (364)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-------------~~~i~~i~~~~~~~~l~~~~~ 330 (364)
+|+..+.. ..++.|.+.|..+++.+..+... ..-.+.|+++|+++.|+..+.
T Consensus 190 -dG~lyanv------w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 190 -NGVIYANI------WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -TTEEEEEE------TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -CCEEEEEE------CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 66544333 23789999999999988776532 134688999998776665554
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=3.2e-06 Score=79.96 Aligned_cols=276 Identities=10% Similarity=-0.002 Sum_probs=163.1
Q ss_pred eecccCCCcc-EEEEEeCCeEEEEECCCCceeeeeeec-----CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce
Q 040533 48 SNMMDWGRNN-ILAIALGLELYLWKQENGEVQKLLKVT-----GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL 121 (364)
Q Consensus 48 ~~~~~~~~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 121 (364)
+.++...+++ +..++. +.|.+||..+++........ -....|.++...++|. |..|+..+-|.+++..++..
T Consensus 213 i~~i~~d~~g~lwigt~-~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~ 290 (781)
T 3v9f_A 213 VRCIYKDTNGNIWIGTS-KGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQF 290 (781)
T ss_dssp EEEEEECTTCCEEEEET-TEEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC--
T ss_pred eeEEEEcCCCCEEEEeC-CcHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCee
Confidence 3444444443 555554 48999998877654332211 1245789999888775 55666645688999876653
Q ss_pred eeeee--------------cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee--------ecccCcEEEE
Q 040533 122 IRNLE--------------GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI--------NAHTAEVCGL 179 (364)
Q Consensus 122 ~~~~~--------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--------~~~~~~v~~~ 179 (364)
..... .....|.++...+ ++. |-.|+.++-|..++........... ......|.++
T Consensus 291 ~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i 368 (781)
T 3v9f_A 291 LLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSV 368 (781)
T ss_dssp -------CEEECBCSSTTSBSSSCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEE
T ss_pred eeeeccccccccCCCCCCCCCCCeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEE
Confidence 22111 1345788888876 555 5567767778888876443111100 0123568999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEE
Q 040533 180 KWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV 259 (364)
Q Consensus 180 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 259 (364)
...+++. |..|+.++-|..||...................|.++...+++. +.+ |. .++-+..+|..+++.....
T Consensus 369 ~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWi-gt--~~~Gl~~~~~~~~~~~~~~ 443 (781)
T 3v9f_A 369 CDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWF-GT--YLGNISYYNTRLKKFQIIE 443 (781)
T ss_dssp EECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEE-EE--TTEEEEEECSSSCEEEECC
T ss_pred EEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEE-Ee--ccCCEEEEcCCCCcEEEec
Confidence 8888776 45566556688898653211000000011245688888887774 444 22 4567899998777543322
Q ss_pred e---cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc-----ccceeEEeecCCCCEEEEEeCC
Q 040533 260 D---TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-----TSRILELSQSPDGLTVVSAAAD 331 (364)
Q Consensus 260 ~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~~d 331 (364)
. ....|.++...++|...+.+ .+.|..||..+++........ ...|.++...++|.+.+. +.+
T Consensus 444 ~~~~~~~~v~~i~~d~~g~lwigt--------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~ 514 (781)
T 3v9f_A 444 LEKNELLDVRVFYEDKNKKIWIGT--------HAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFG 514 (781)
T ss_dssp STTTCCCCEEEEEECTTSEEEEEE--------TTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESS
T ss_pred cCCCCCCeEEEEEECCCCCEEEEE--------CCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcC
Confidence 1 23568999999888876654 456889998776543322111 357899999998876654 443
Q ss_pred CcEEEEEeeC
Q 040533 332 ETLRFWEAFG 341 (364)
Q Consensus 332 g~i~vw~~~~ 341 (364)
+-|..|+..+
T Consensus 515 ~Gl~~~~~~~ 524 (781)
T 3v9f_A 515 GGVGIYTPDM 524 (781)
T ss_dssp SCEEEECTTC
T ss_pred CCEEEEeCCC
Confidence 3466677544
No 267
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.96 E-value=2.7e-06 Score=71.02 Aligned_cols=237 Identities=8% Similarity=-0.043 Sum_probs=146.7
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEE-EEecCCcEEEEecCCccee-eeeecCCCcEE
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLA-VGYMASKLQLWDAETSKLI-RNLEGHDKRVA 133 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~ 133 (364)
..+|..+....|+..++.+........+.+ ...+..++|.+.+..|. +-...+.|..+++..+... ..+...-....
T Consensus 4 ~p~ll~~~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~ 82 (318)
T 3sov_A 4 APLLLYANRRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD 82 (318)
T ss_dssp CCEEEEECEEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred ccEEEEEccCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc
Confidence 345666777899999998764211111111 23467899998655554 4446778999998766322 22222234456
Q ss_pred EEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCCCCcce
Q 040533 134 TASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG--DDNLVHVWDHSKMSSSKCL 211 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~ 211 (364)
.+++.+.++.++++-...+.|.++++..... .............+++.|.+..|+.+. ..+.|...++.... .
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~----~ 157 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS----R 157 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS----C
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC----e
Confidence 7888874566666666778899999875432 222323445678999998766666655 25788888865321 2
Q ss_pred EEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCC
Q 040533 212 HRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDG 289 (364)
Q Consensus 212 ~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 289 (364)
..+ ...-.....++++|++..++.+-. ..+.|..+|+.......... .......+++..++-+ .+- ...
T Consensus 158 ~~~~~~~l~~Pnglavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~ly-wtd------~~~ 228 (318)
T 3sov_A 158 FIIINSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILY-WTD------WST 228 (318)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEE-EEE------TTT
T ss_pred EEEEECCCCCccEEEEeccCCEEEEEEC--CCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEE-EEe------cCC
Confidence 222 222345678999998878888765 67899999986433322222 2345677777544322 222 227
Q ss_pred CeEEEeeCCCCceeeecc
Q 040533 290 QKLCLWKYPHMTKWGELQ 307 (364)
Q Consensus 290 ~~i~i~d~~~~~~~~~~~ 307 (364)
+.|..++..+++....+.
T Consensus 229 ~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 229 HSILACNKYTGEGLREIH 246 (318)
T ss_dssp TEEEEEETTTCCSCEEEE
T ss_pred CeEEEEECCCCCceEEEe
Confidence 889999987777665554
No 268
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.94 E-value=3.3e-07 Score=72.77 Aligned_cols=177 Identities=8% Similarity=0.063 Sum_probs=120.8
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcE--EEEEeecCCCCEEEEeeCCCcEEEEEcccCcce
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRV--ATASWNHWNGHILTSGSQDKSIINHDVRVSNNV 165 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 165 (364)
.....+.|+ ++.+..+.+.+|.|+++|+++++.+..+ -. ... ..+++. .+.+.+..-.++.+.+||..+.+.
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~- 128 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQR- 128 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEE-
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcE-
Confidence 334688887 4566667778889999999999998887 32 233 235543 455666666789999999987775
Q ss_pred eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc--ccc---ceeEEEEccCCCcEEEeecCC
Q 040533 166 TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD--HRA---AVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~~~~~~g~ 240 (364)
+..+... ..-..++ ++++.|+.+..++.|.++|..+.+. +..+.- +.. .++.+.|. +| .+++..-
T Consensus 129 ~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v---~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw-- 198 (268)
T 3nok_A 129 ERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFAL---VGAVQVKLRGQPVELINELECA-NG-VIYANIW-- 198 (268)
T ss_dssp EEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCE---EEEEECEETTEECCCEEEEEEE-TT-EEEEEET--
T ss_pred EEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeE---EEEEEeCCCCcccccccccEEe-CC-EEEEEEC--
Confidence 4444332 2223444 5677777777789999999776543 443332 222 34567777 55 5666654
Q ss_pred CCCeEEEEECCCCeEEEEEecC--------------CCeEEEEEcCCccceeee
Q 040533 241 QDGCIKIWNVQKGTCIHSVDTK--------------AQICGLEWNRHHKEILSG 280 (364)
Q Consensus 241 ~d~~i~i~d~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~ 280 (364)
.++.|.+.|.++++.+..+... .-.+.++++|+++.|+++
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT 252 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT 252 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence 6789999999999999988642 246899999987766654
No 269
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.94 E-value=4.8e-06 Score=66.48 Aligned_cols=204 Identities=15% Similarity=0.195 Sum_probs=136.2
Q ss_pred eecCCCCCceEEEEcCCCCEEE-EEecCCcEEEEecCCcceeeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc
Q 040533 82 KVTGEDDFPTSISWSQDAKTLA-VGYMASKLQLWDAETSKLIRNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDV 159 (364)
Q Consensus 82 ~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 159 (364)
.+.+-...+..++|+|++..|+ +...++.|...|.. ++.++.+.- .......+++.+ ++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 3446567899999999876555 46678889999987 887777642 235678888887 7777676666778889887
Q ss_pred ccCcce--eeee------ecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec-------ccccceeEE
Q 040533 160 RVSNNV--TSRI------NAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR-------DHRAAVKAL 224 (364)
Q Consensus 160 ~~~~~~--~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~v~~~ 224 (364)
...... .... ...+.....++|+|.++.|+++.+.....+|.+........+..+. .+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 655421 1111 1234456899999998777777765555555543111111122221 122356899
Q ss_pred EEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC----------CCeEEEEEcCCccceeeeccCCccCCCCeEEE
Q 040533 225 AWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK----------AQICGLEWNRHHKEILSGHGFSSSGDGQKLCL 294 (364)
Q Consensus 225 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i 294 (364)
+++|....+++... ....+..+|.. ++.+..+... .+...+++.++|+..+++ +.+.++.
T Consensus 179 ~~dp~tg~lliLS~--~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs-------E~n~~y~ 248 (255)
T 3qqz_A 179 EFNQQKNTLLVLSH--ESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS-------EPNRFYR 248 (255)
T ss_dssp EEETTTTEEEEEET--TTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-------TTTEEEE
T ss_pred EEcCCCCeEEEEEC--CCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc-------CCceEEE
Confidence 99998888888876 78999999975 5566666543 267899999999866654 2556666
Q ss_pred eeC
Q 040533 295 WKY 297 (364)
Q Consensus 295 ~d~ 297 (364)
+.-
T Consensus 249 f~~ 251 (255)
T 3qqz_A 249 FTP 251 (255)
T ss_dssp EEC
T ss_pred EEe
Confidence 653
No 270
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.94 E-value=9.5e-07 Score=80.16 Aligned_cols=262 Identities=12% Similarity=0.095 Sum_probs=153.4
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCC--CCce-EEEEcC---CCC-EEEEEec------CCcEEEEecCCccee
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGED--DFPT-SISWSQ---DAK-TLAVGYM------ASKLQLWDAETSKLI 122 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~--~~v~-~~~~s~---~~~-~l~~~~~------dg~i~iw~~~~~~~~ 122 (364)
+.+++++.++.|+-+|..+++..-......+. ..+. ...... +++ .+++++. +|.|.-+|.++|+.+
T Consensus 118 ~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~ 197 (582)
T 1flg_A 118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEI 197 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEE
Confidence 45667778999999999999875444432211 0111 111111 233 5666653 789999999999887
Q ss_pred eeeecCCCcE-----------------------------------------EEEEeecCCCCEEEEeeC-----------
Q 040533 123 RNLEGHDKRV-----------------------------------------ATASWNHWNGHILTSGSQ----------- 150 (364)
Q Consensus 123 ~~~~~~~~~v-----------------------------------------~~~~~~~~~~~~l~~~~~----------- 150 (364)
.........+ ..+++.| ...+++.+..
T Consensus 198 W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 198 WMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSCGGGGS
T ss_pred eecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCcccCcccc
Confidence 7654311000 1245566 5566665552
Q ss_pred ---------C----CcEEEEEcccCcceeeeeec-cc--------CcEEEEEEc-CCCC---EEEEEeCCCeEEEEeCCC
Q 040533 151 ---------D----KSIINHDVRVSNNVTSRINA-HT--------AEVCGLKWS-NEGN---LLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 151 ---------d----g~i~~~d~~~~~~~~~~~~~-~~--------~~v~~~~~~-~~~~---~l~~~~~d~~i~iwd~~~ 204 (364)
| +.|..+|.++++..-..... |. .++. +... .+|+ .++.++.+|.++++|.++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 2 57999999988754432221 21 2222 2222 4664 788899999999999776
Q ss_pred CCCCcceEEecccc-------------cc--------------------------------eeEEEEccCCCcEEEeec-
Q 040533 205 MSSSKCLHRFRDHR-------------AA--------------------------------VKALAWCPYQFNVLASGG- 238 (364)
Q Consensus 205 ~~~~~~~~~~~~~~-------------~~--------------------------------v~~~~~~~~~~~~~~~~~- 238 (364)
++. +....... .+ -..++++|+...+++...
T Consensus 356 G~~---lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~ 432 (582)
T 1flg_A 356 GKL---QNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH 432 (582)
T ss_dssp CCE---EEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred CCE---ecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence 532 22221110 00 013566666544444220
Q ss_pred -----------------------------CCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCC
Q 040533 239 -----------------------------GTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDG 289 (364)
Q Consensus 239 -----------------------------g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 289 (364)
...+|.|..||+.+++.+.+.....+...-.....+..++.+. .|
T Consensus 433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~------~d 506 (582)
T 1flg_A 433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGT------GD 506 (582)
T ss_dssp EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEEC------TT
T ss_pred cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEEC------CC
Confidence 0136889999999999988776554433322223455555553 39
Q ss_pred CeEEEeeCCCCceeeeccccccce-eEEeecCCCC-EEEEE
Q 040533 290 QKLCLWKYPHMTKWGELQHQTSRI-LELSQSPDGL-TVVSA 328 (364)
Q Consensus 290 ~~i~i~d~~~~~~~~~~~~~~~~i-~~i~~~~~~~-~l~~~ 328 (364)
+.++.||.++++.+.+++...... .-+.|..+|+ |+++.
T Consensus 507 g~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 507 GYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 999999999999999887543321 2255666776 44443
No 271
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.93 E-value=2.9e-06 Score=71.16 Aligned_cols=237 Identities=8% Similarity=-0.003 Sum_probs=136.1
Q ss_pred eecccCCCc-c-EEEEEeCCeEEEEECCCCceeeeeeecC-----------------CCCCceEEEEcC-CCCEEEEEec
Q 040533 48 SNMMDWGRN-N-ILAIALGLELYLWKQENGEVQKLLKVTG-----------------EDDFPTSISWSQ-DAKTLAVGYM 107 (364)
Q Consensus 48 ~~~~~~~~~-~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~-----------------~~~~v~~~~~s~-~~~~l~~~~~ 107 (364)
...++|+++ + +++...++.|..|+..+++......... ....+..+++.+ +++ |+++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence 345667664 3 5555567899999988765432221000 013578999998 554 555544
Q ss_pred CCcEEEEecCCcceeeeeec-----CCCcEEEEEeecCCCCEEEEeeC-----------------CCcEEEEEcccCcce
Q 040533 108 ASKLQLWDAETSKLIRNLEG-----HDKRVATASWNHWNGHILTSGSQ-----------------DKSIINHDVRVSNNV 165 (364)
Q Consensus 108 dg~i~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~i~~~d~~~~~~~ 165 (364)
.+.|..+|..+++. ..+.. .......+++.+.++++.++-.. ++.|..+|..++..
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~- 177 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET- 177 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE-
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE-
Confidence 55688888776542 22211 11346778887734555554322 36688888764442
Q ss_pred eeeeecccCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC-----
Q 040533 166 TSRINAHTAEVCGLKWSNEGNLLASG-GDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG----- 239 (364)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g----- 239 (364)
..+.........++++|+++.|+.+ ...+.|..|++....... ...+....+ ...++++++|. ++++..+
T Consensus 178 -~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~ 253 (322)
T 2fp8_A 178 -TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGN 253 (322)
T ss_dssp -EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSC-EEEEEEEETTSS
T ss_pred -EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCC-EEEEecCccccc
Confidence 2121222345679999999866655 456889999987432211 112211223 67899999985 5554321
Q ss_pred ---CCCCeEEEEECCCCeEEEEEecC-----CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCC
Q 040533 240 ---TQDGCIKIWNVQKGTCIHSVDTK-----AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPH 299 (364)
Q Consensus 240 ---~~d~~i~i~d~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~ 299 (364)
...+.|..+|. .++.+..+... ..+..+++ .++.+.++.. ..+.|..+++..
T Consensus 254 ~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~------~~~~i~~~~~~~ 313 (322)
T 2fp8_A 254 MHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTL------FHGSVGILVYDK 313 (322)
T ss_dssp TTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECS------SCSEEEEEEC--
T ss_pred ccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeec------CCCceEEEeccc
Confidence 01467888887 47777766543 23555655 3454444432 267788887653
No 272
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.88 E-value=3e-07 Score=85.14 Aligned_cols=260 Identities=12% Similarity=0.036 Sum_probs=143.2
Q ss_pred eEEEEECCCCceeeeeeecC-CCCCceEEEEcCCCCEEEEEec-CCcEEEEecCCcceeeeeecCCCc-EEEEEeecCCC
Q 040533 66 ELYLWKQENGEVQKLLKVTG-EDDFPTSISWSQDAKTLAVGYM-ASKLQLWDAETSKLIRNLEGHDKR-VATASWNHWNG 142 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~ 142 (364)
.+.+||..+++...+..+.. +.....++++.++++++++|+. ++.+.+||..+++....-..+..+ -.+++..+ ++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg 298 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DG 298 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TS
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CC
Confidence 68899999988766554432 3334456788899999999984 457999998876544322211111 13445556 88
Q ss_pred CEEEEee-CC-----CcEEEEEcccCcceeeeee-----cccCcEEEEEEcCCCCEEEEEeCC---------CeEEEEeC
Q 040533 143 HILTSGS-QD-----KSIINHDVRVSNNVTSRIN-----AHTAEVCGLKWSNEGNLLASGGDD---------NLVHVWDH 202 (364)
Q Consensus 143 ~~l~~~~-~d-----g~i~~~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~ 202 (364)
++++.|+ .+ ..+.+||..+..- ..+. .....-....+..++..++.++.+ ..+..||.
T Consensus 299 ~iyv~GG~~~~~~~~~~~e~yd~~t~~W--~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~ 376 (656)
T 1k3i_A 299 RVFTIGGSWSGGVFEKNGEVYSPSSKTW--TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYT 376 (656)
T ss_dssp CEEEECCCCCSSSCCCCEEEEETTTTEE--EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEEC
T ss_pred eEEEEeCcccCCcccccceEeCCCCCcc--eeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeec
Confidence 8999988 34 4689999876542 1110 000000001122344455555444 35678887
Q ss_pred CCCCCCcceEEecc------cccceeEEEEccCCCcEEEeecCCCCC-----------eEEEEECCCCeEEEEE--ecC-
Q 040533 203 SKMSSSKCLHRFRD------HRAAVKALAWCPYQFNVLASGGGTQDG-----------CIKIWNVQKGTCIHSV--DTK- 262 (364)
Q Consensus 203 ~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~g~~d~-----------~i~i~d~~~~~~~~~~--~~~- 262 (364)
.............. ....-.++.|...+..+++.|+ .++ .+.+||..+..-.... ...
T Consensus 377 ~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG--~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~ 454 (656)
T 1k3i_A 377 SGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGG--SPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF 454 (656)
T ss_dssp STTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECC--BSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS
T ss_pred CCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeC--CCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC
Confidence 65432111111100 0112234445444457888875 221 6888888776654432 111
Q ss_pred -CCeEEEEEcCCccceeeeccCCc-----cCCCCeEEEeeCCCCce--eeeccccccceeEEeecCCCCEEEEEeC
Q 040533 263 -AQICGLEWNRHHKEILSGHGFSS-----SGDGQKLCLWKYPHMTK--WGELQHQTSRILELSQSPDGLTVVSAAA 330 (364)
Q Consensus 263 -~~v~~~~~~~~~~~l~~~~~~~~-----~~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 330 (364)
..-.++...|+++.++.|..-.. ...-..+.+||..+.+- +..+...........+.|+|+.++.|+.
T Consensus 455 ~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 455 ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 22345567788988887753100 01125689999876432 1112222222234556789999999885
No 273
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.88 E-value=3e-06 Score=66.69 Aligned_cols=190 Identities=13% Similarity=0.123 Sum_probs=122.1
Q ss_pred ceeeeeecCCC--cEEEEEeecCCCCEEEEeeCCC--cEEEEEcccCcceeeeeecccC-cEEEEEEcCCCCEEEEEeCC
Q 040533 120 KLIRNLEGHDK--RVATASWNHWNGHILTSGSQDK--SIINHDVRVSNNVTSRINAHTA-EVCGLKWSNEGNLLASGGDD 194 (364)
Q Consensus 120 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d 194 (364)
+.+.++. |.. -...+.|++ +.++.+.+.+| .|+.+|+.+++.. ........ --..++... +++....-.+
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~-~~~~l~~~~fgeGi~~~~-~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRIL-QRAEVPPPYFGAGIVAWR-DRLIQLTWRN 84 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEE-EEEECCTTCCEEEEEEET-TEEEEEESSS
T ss_pred EEEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEE-EEEeCCCCcceeEEEEeC-CEEEEEEeeC
Confidence 3455553 543 466888874 56666666654 8999999988753 33322211 113344432 3344444578
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC------CCeEEE
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK------AQICGL 268 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~------~~v~~~ 268 (364)
+.+.+||..+. +.+.++.... .-..++ +++..++++-+ ++.|.++|..+.+.+..+... ..++.+
T Consensus 85 ~~v~v~D~~tl---~~~~ti~~~~-~Gwglt--~dg~~L~vSdg---s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 85 HEGFVYDLATL---TPRARFRYPG-EGWALT--SDDSHLYMSDG---TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp SEEEEEETTTT---EEEEEEECSS-CCCEEE--ECSSCEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred CEEEEEECCcC---cEEEEEeCCC-CceEEe--eCCCEEEEECC---CCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 89999997764 3455554322 223444 56777888763 788999999999998887653 345667
Q ss_pred EEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc-------------ccceeEEeecCCCCEEEEEeC
Q 040533 269 EWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ-------------TSRILELSQSPDGLTVVSAAA 330 (364)
Q Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-------------~~~i~~i~~~~~~~~l~~~~~ 330 (364)
.+. +|+..+.. -.++.|.+.|..+++.+..+... ..-.+.|+++|+++.|+..+.
T Consensus 156 e~~-~G~lyanv------w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 156 EWV-NGELLANV------WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEE-TTEEEEEE------TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEe-CCEEEEEE------CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 766 55544333 22779999999999988776521 134588999998877766664
No 274
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.88 E-value=3e-06 Score=76.89 Aligned_cols=258 Identities=13% Similarity=0.086 Sum_probs=149.9
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCC--CCce-EEEEcCCCCEEEEEec------CCcEEEEecCCcceeeeeecC
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGED--DFPT-SISWSQDAKTLAVGYM------ASKLQLWDAETSKLIRNLEGH 128 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~--~~v~-~~~~s~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~ 128 (364)
+++++.++.|+.+|..+++..-......+. ..++ ..... ++ .+++++. +|.|+-+|.++|+.+..+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 677778899999999999875444332211 0111 11111 34 5555553 789999999999988776532
Q ss_pred CCc-------------------------------------E-EEEEeecCCCCEEEEeeCC----------------CcE
Q 040533 129 DKR-------------------------------------V-ATASWNHWNGHILTSGSQD----------------KSI 154 (364)
Q Consensus 129 ~~~-------------------------------------v-~~~~~~~~~~~~l~~~~~d----------------g~i 154 (364)
... + ..+++.+ ...+++.+..+ +.|
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCccccceE
Confidence 211 0 1345556 56666666554 378
Q ss_pred EEEEcccCcceeeeeec-cc--------CcEEEEEEc-CCC---CEEEEEeCCCeEEEEeCCCCCCCcceEEeccc----
Q 040533 155 INHDVRVSNNVTSRINA-HT--------AEVCGLKWS-NEG---NLLASGGDDNLVHVWDHSKMSSSKCLHRFRDH---- 217 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~~-~~--------~~v~~~~~~-~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---- 217 (364)
..+|.++++..-..... |. .++. +... .+| ..++.++.+|.++++|.++++. +......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---lw~~~~~~~~~ 356 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL---VSANKLDDTVN 356 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCE---EEEEESSTTCC
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCE---eecccccCCcc
Confidence 89999988753332222 21 2222 2222 466 4677788999999999876542 2222100
Q ss_pred ---------ccce--------------------------eEEEEccCCCcEEEee-------------------------
Q 040533 218 ---------RAAV--------------------------KALAWCPYQFNVLASG------------------------- 237 (364)
Q Consensus 218 ---------~~~v--------------------------~~~~~~~~~~~~~~~~------------------------- 237 (364)
..++ ..++++|+...+++..
T Consensus 357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 436 (599)
T 1w6s_A 357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL 436 (599)
T ss_dssp SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccc
Confidence 0000 2355666543332210
Q ss_pred -----cCC------CCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec
Q 040533 238 -----GGT------QDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 238 -----~g~------~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 306 (364)
... .+|.|..||+.+++.+.......+...-.....+..++.+. .|+.++.||.++++.+.++
T Consensus 437 ~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt------~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGT------LDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC------TTSEEEEEETTTCCEEEEE
T ss_pred eeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEEC------CCCeEEEEECCCCCEEEEe
Confidence 001 34789999999999988876543332222222444555553 4999999999999999887
Q ss_pred cccccce-eEEeecCCCC-EEEEE
Q 040533 307 QHQTSRI-LELSQSPDGL-TVVSA 328 (364)
Q Consensus 307 ~~~~~~i-~~i~~~~~~~-~l~~~ 328 (364)
+.....+ .-+.+..+|+ |+++.
T Consensus 511 ~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 511 KIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp ECSSCCCSCCEEEEETTEEEEEEE
T ss_pred eCCCCcEeccEEEEeCCEEEEEEE
Confidence 6433211 2245556776 44443
No 275
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=2.7e-05 Score=73.71 Aligned_cols=274 Identities=7% Similarity=-0.030 Sum_probs=164.5
Q ss_pred ecccCCCc-cEEEEEeCCeEEEEECCCCceeeeeeec-----CCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCccee
Q 040533 49 NMMDWGRN-NILAIALGLELYLWKQENGEVQKLLKVT-----GEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLI 122 (364)
Q Consensus 49 ~~~~~~~~-~~~~~~~~~~i~iw~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 122 (364)
.++...++ .+.++..++.|..||..+++........ -....|.++...+++.+.+ |+.+ -+.+||..+++..
T Consensus 166 ~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~ 243 (781)
T 3v9f_A 166 WTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFT 243 (781)
T ss_dssp EEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEE
T ss_pred EEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEE
Confidence 33443333 3555555558999998877654332111 1135688999888887554 5555 5899998766543
Q ss_pred eeee-------cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee-------------ecccCcEEEEEEc
Q 040533 123 RNLE-------GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI-------------NAHTAEVCGLKWS 182 (364)
Q Consensus 123 ~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-------------~~~~~~v~~~~~~ 182 (364)
.... .....|.++...+ ++. |..|+..+-|.++|..+........ ......|.++...
T Consensus 244 ~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D 321 (781)
T 3v9f_A 244 NFHNNPGNIHGALSSYIFSIKQLK-DNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQD 321 (781)
T ss_dssp C-----------CCCCEEEEEECT-TSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEEC
T ss_pred EEEcCCCccccccCceEEEEEECC-CCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEe
Confidence 2211 1235688888875 554 5556665568888876543111000 1134578999988
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec----------ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC
Q 040533 183 NEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR----------DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK 252 (364)
Q Consensus 183 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 252 (364)
++|. |-.|+.++-|..++..... ...+. .....|.++...+++...+.+ .++-|..||..+
T Consensus 322 ~~g~-lWigt~~~Gl~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt----~~~Gl~~~~~~~ 392 (781)
T 3v9f_A 322 SFNN-IWIGTWGGGINFISNAPPT----FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGT----DGGGINVFENGK 392 (781)
T ss_dssp SSCC-EEEEEBSSCEEEECSSCCS----CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEE----BSSCEEEEETTE
T ss_pred CCCC-EEEEecCCeEEEeCCCCCc----ceeeccCccccccCCCCCcceEEEEEcCCCCEEEEe----CCCcEEEEECCC
Confidence 8886 5556666668888865432 12221 123568899888877544433 356688999876
Q ss_pred CeEEEEE----ecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc--ccccceeEEeecCCCCEEE
Q 040533 253 GTCIHSV----DTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ--HQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 253 ~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~ 326 (364)
+...... .....|.++...++|.+.+... ++.+..++..+++...... .....|.++...++|.+.+
T Consensus 393 ~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~-------~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi 465 (781)
T 3v9f_A 393 RVAIYNKENRELLSNSVLCSLKDSEGNLWFGTY-------LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI 465 (781)
T ss_dssp EEEECC-----CCCSBEEEEEECTTSCEEEEET-------TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE
T ss_pred CeEEEccCCCCCCCcceEEEEECCCCCEEEEec-------cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE
Confidence 5432211 1235688999888887766542 5778889887665432221 2346789999988886555
Q ss_pred EEeCCCcEEEEEeeCCCC
Q 040533 327 SAAADETLRFWEAFGPSG 344 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~ 344 (364)
|+. +.|..++..+++.
T Consensus 466 -gt~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 466 -GTH-AGVFVIDLASKKV 481 (781)
T ss_dssp -EET-TEEEEEESSSSSC
T ss_pred -EEC-CceEEEeCCCCeE
Confidence 444 5688888776543
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=7.4e-06 Score=71.52 Aligned_cols=237 Identities=9% Similarity=0.009 Sum_probs=137.6
Q ss_pred CceEEEEcC-CCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeC-CC----cEEEEEcccC
Q 040533 89 FPTSISWSQ-DAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQ-DK----SIINHDVRVS 162 (364)
Q Consensus 89 ~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg----~i~~~d~~~~ 162 (364)
....++++| ++..|.++...+.|+.+|++.+...... ........++|++ +++.|+.+.. ++ .+.+++....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 567899998 4566666665588999998876544433 3556688999999 8885555543 22 2333443322
Q ss_pred cceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC
Q 040533 163 NNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241 (364)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 241 (364)
......+.. ......++++| ++.++++-...+.|..++...... ..+.... .......++|+|+++.++++.. .
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-~~~~~~~-~~~~P~gia~~pdG~~lyv~d~--~ 290 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-TPLFTIQ-DSGWEFHIQFHPSGNYAYIVVV--N 290 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-EEEEECS-SSSCCEEEEECTTSSEEEEEET--T
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEEEcC-CCCcceeEEEcCCCCEEEEEEC--C
Confidence 111122221 23456788999 677666666778999999764321 0111111 1234678999999976777754 6
Q ss_pred CCeEEEEECCC--CeE--EEEEecC----------------CCeE-EEEEc--------CCccceeeeccCCccCCCCeE
Q 040533 242 DGCIKIWNVQK--GTC--IHSVDTK----------------AQIC-GLEWN--------RHHKEILSGHGFSSSGDGQKL 292 (364)
Q Consensus 242 d~~i~i~d~~~--~~~--~~~~~~~----------------~~v~-~~~~~--------~~~~~l~~~~~~~~~~~~~~i 292 (364)
.+.|..++... ++. ...+... .... .++.. ++|.+.++-.. .+.|
T Consensus 291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~------n~~I 364 (430)
T 3tc9_A 291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRE------NHCI 364 (430)
T ss_dssp TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGG------GTEE
T ss_pred CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECC------CcEE
Confidence 78899987653 222 1222111 0112 34442 33444444322 6678
Q ss_pred EEeeCCCCceeeecccc------------------ccceeEEeecCC-CCEEEEEeCCCcEEEEEee
Q 040533 293 CLWKYPHMTKWGELQHQ------------------TSRILELSQSPD-GLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 293 ~i~d~~~~~~~~~~~~~------------------~~~i~~i~~~~~-~~~l~~~~~dg~i~vw~~~ 340 (364)
+.++ .++... .+.+. -.....|+++|+ +.++++-..++.|+.++++
T Consensus 365 ~~i~-~~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 365 RILT-PQGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEC-TTSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEC-CCCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 8877 344332 22111 124688999994 6555555566788887764
No 277
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.84 E-value=5.4e-05 Score=69.27 Aligned_cols=232 Identities=7% Similarity=-0.081 Sum_probs=147.2
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEE-ecCCcEEEEecCCcceeeeeecCCCcEEE
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVG-YMASKLQLWDAETSKLIRNLEGHDKRVAT 134 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 134 (364)
+.+|..+..+.|+..++.+........+.+ -..+..++|++.+..|..+ ..++.|..++++.......+.........
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 456777788999999998765443333322 3467899999976666554 46788999998755443333333345667
Q ss_pred EEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCCCcceE
Q 040533 135 ASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD--DNLVHVWDHSKMSSSKCLH 212 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~ 212 (364)
+++.+..++++++-...+.|.+.++..... .......-.....+++.|....|+.... .+.|...++.... ..
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~----~~ 159 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE----RT 159 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----CE
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc----eE
Confidence 888774566666666678899999875432 2222233355789999996556665552 4678777765432 22
Q ss_pred EecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeE
Q 040533 213 RFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKL 292 (364)
Q Consensus 213 ~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i 292 (364)
.+...-.....+++++++..++.+-. ..+.|..+|+................++++..+ .++.+. ...+.|
T Consensus 160 ~l~~~~~~P~GlalD~~~~~LY~aD~--~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~--~ly~tD-----~~~~~I 230 (628)
T 4a0p_A 160 TLVPNVGRANGLTIDYAKRRLYWTDL--DTNLIESSNMLGLNREVIADDLPHPFGLTQYQD--YIYWTD-----WSRRSI 230 (628)
T ss_dssp EEECSCSSEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECCSCEEEEEEETT--EEEEEE-----TTTTEE
T ss_pred EEECCCCCcceEEEccccCEEEEEEC--CCCEEEEEcCCCCceEEeeccCCCceEEEEECC--EEEEec-----CCCCEE
Confidence 22223456789999998878888765 678999999976443222222344567777653 333332 226777
Q ss_pred EEeeCCCCce
Q 040533 293 CLWKYPHMTK 302 (364)
Q Consensus 293 ~i~d~~~~~~ 302 (364)
...|..+++.
T Consensus 231 ~~~dk~tg~~ 240 (628)
T 4a0p_A 231 ERANKTSGQN 240 (628)
T ss_dssp EEEETTTCCS
T ss_pred EEEECCCCCc
Confidence 7777665543
No 278
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.83 E-value=3.2e-05 Score=64.92 Aligned_cols=269 Identities=10% Similarity=0.050 Sum_probs=148.2
Q ss_pred eeecccCCC-ccEEEEEeCCeEEEEECCCCceeeeeee--cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee
Q 040533 47 YSNMMDWGR-NNILAIALGLELYLWKQENGEVQKLLKV--TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR 123 (364)
Q Consensus 47 ~~~~~~~~~-~~~~~~~~~~~i~iw~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 123 (364)
.+..+.+.+ +..++++..+.|. .....++.=..... ......+.++.+.+ +..++ ++..|.|.. ..+.|+.-.
T Consensus 37 ~~~~v~~~~~~~~~~~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~ 112 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWS 112 (327)
T ss_dssp CEEEEEESSSSCEEEEETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCE
T ss_pred cEEEEEECCCCcEEEEcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCce
Confidence 356666654 4566677777663 33444432111111 12244688999986 44444 445665443 333344333
Q ss_pred eee---cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040533 124 NLE---GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVW 200 (364)
Q Consensus 124 ~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 200 (364)
.+. .+...+..+.+.+ ++..++++ .+|.|..- .+.++.-..........+..+.+.+++.+++.+...+..+-.
T Consensus 113 ~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~ 189 (327)
T 2xbg_A 113 QIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTW 189 (327)
T ss_dssp ECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEE
T ss_pred ECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEe
Confidence 322 2334577888776 66666555 45554321 122333233333455678999999998877766544333334
Q ss_pred eCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-----CCeEEEEEcCCcc
Q 040533 201 DHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-----AQICGLEWNRHHK 275 (364)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-----~~v~~~~~~~~~~ 275 (364)
|-. +...+.+. ......+..+.+.+++. +++.+ .+|.+++.+...++.-..+... ..+..+.+.+++.
T Consensus 190 d~g-G~tW~~~~--~~~~~~~~~~~~~~~g~-~~~~~---~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~ 262 (327)
T 2xbg_A 190 EPG-QTAWEPHN--RTTSRRLHNMGFTPDGR-LWMIV---NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE 262 (327)
T ss_dssp CTT-CSSCEEEE--CCSSSCEEEEEECTTSC-EEEEE---TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC
T ss_pred CCC-CCceeECC--CCCCCccceeEECCCCC-EEEEe---CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE
Confidence 421 12222221 23455688899998874 55544 4787777643334433333211 3478899998887
Q ss_pred ceeeeccCCccCCCCeEEEeeCCCCceeeeccc---cccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 276 EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH---QTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 276 ~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
.++++. ++.+ ++..+.++....+.. ....+.++.|.+++ .+++++.+|.|.-++
T Consensus 263 ~~~~g~-------~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 263 VWLAGG-------AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EEEEES-------TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred EEEEeC-------CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 777653 5655 344444554444432 23567888887555 466677889776654
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.83 E-value=1.3e-05 Score=70.02 Aligned_cols=239 Identities=8% Similarity=-0.018 Sum_probs=140.6
Q ss_pred CCceEEEEcCC--CCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC---C-cEEEEEccc
Q 040533 88 DFPTSISWSQD--AKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD---K-SIINHDVRV 161 (364)
Q Consensus 88 ~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~i~~~d~~~ 161 (364)
.....++|+|+ ...|..+...+.|+.++..+++...... .......+++++ +++++++.... . .+...+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCC
Confidence 35679999985 4456666554889999998776554433 455688999999 88855544321 1 233333322
Q ss_pred CcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCC
Q 040533 162 SNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT 240 (364)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 240 (364)
.......+. .......++++| ++.+.++-..++.|+.+|...+.....+... +....-..++|+|++..++++-.
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~dpdG~~LYvad~-- 292 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-DTKGSNFHIVWHPTGDWAYIIYN-- 292 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-SCCSSCEEEEECTTSSEEEEEET--
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-CCCCCcccEEEeCCCCEEEEEeC--
Confidence 211011111 223456788999 6766666667788999997643210111111 11222346999999976777754
Q ss_pred CCCeEEEEECC--CCeE--EEEEecC----------------CCeEEEEE---------cCCccceeeeccCCccCCCCe
Q 040533 241 QDGCIKIWNVQ--KGTC--IHSVDTK----------------AQICGLEW---------NRHHKEILSGHGFSSSGDGQK 291 (364)
Q Consensus 241 ~d~~i~i~d~~--~~~~--~~~~~~~----------------~~v~~~~~---------~~~~~~l~~~~~~~~~~~~~~ 291 (364)
..+.|+.++.. ++.. ...+... .....+++ .++|.+.++-.. .+.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~------n~~ 366 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD------SHT 366 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT------TTE
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC------CCE
Confidence 67899998865 2321 1111110 23566888 667766655432 678
Q ss_pred EEEeeCCCCceeeecccc------------------ccceeEEeec-CCCCEEEEEeCCCcEEEEEee
Q 040533 292 LCLWKYPHMTKWGELQHQ------------------TSRILELSQS-PDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 292 i~i~d~~~~~~~~~~~~~------------------~~~i~~i~~~-~~~~~l~~~~~dg~i~vw~~~ 340 (364)
|+.++. ++... .+.+. -.....|+++ ++|.++++=..++.|+.++++
T Consensus 367 I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 367 VRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 888884 44332 22111 1236789999 566666666667788888764
No 280
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.79 E-value=3.4e-05 Score=72.26 Aligned_cols=234 Identities=6% Similarity=-0.074 Sum_probs=144.5
Q ss_pred cEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEE-EEecCCcEEEEecCCc----ceeeeeecCCCc
Q 040533 57 NILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLA-VGYMASKLQLWDAETS----KLIRNLEGHDKR 131 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~----~~~~~~~~~~~~ 131 (364)
.++..+....|+..++...+...+. .....+..++|.+....|+ +-...+.|+.+++... .....+......
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~---~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~ 472 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 472 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred cccccccccceeEeeccCCcceeee---cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCC
Confidence 4566666778888888776554333 3355678999998655554 4445678988888753 223333323445
Q ss_pred EEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCCCc
Q 040533 132 VATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD--DNLVHVWDHSKMSSSK 209 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~ 209 (364)
...|++.+..++++++-...+.|.+.++..... ...+.........|++.|.+..|+.... .+.|...++....
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~--- 548 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--- 548 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc---
Confidence 677888874456666666778999999874442 3333334456889999997666666553 2678888875321
Q ss_pred ceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCccceeeeccCCcc
Q 040533 210 CLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 210 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
....+...-.....|++++.+..|+++-. ..+.|..+++........+... ....+|++..+ .|+.+.
T Consensus 549 ~~~lv~~~l~~P~GLavD~~~~~LYwaD~--~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~--~lYwtD----- 619 (791)
T 3m0c_C 549 IYSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTD----- 619 (791)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT--EEEEEE-----
T ss_pred eEEEEeCCCCCceEEEEecCCCeEEEEeC--CCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC--EEEEEE-----
Confidence 11222223356789999988778888755 6788999998655444444332 23456666433 444433
Q ss_pred CCCCeEEEeeCCCCceeeec
Q 040533 287 GDGQKLCLWKYPHMTKWGEL 306 (364)
Q Consensus 287 ~~~~~i~i~d~~~~~~~~~~ 306 (364)
...+.|...+..+++.+..+
T Consensus 620 ~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 620 IINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TTTTEEEEEETTTCCCCEEE
T ss_pred CCCCEEEEEeCCCCcceEEe
Confidence 22677887777666554444
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.79 E-value=1.6e-06 Score=81.44 Aligned_cols=196 Identities=10% Similarity=0.054 Sum_probs=112.0
Q ss_pred CceEEEEc-CCCCEEEEEec-CC----cEEEEecCCc-ceee-eeecCCCcEEEEEeecCCCCEEEEeeCC-----CcEE
Q 040533 89 FPTSISWS-QDAKTLAVGYM-AS----KLQLWDAETS-KLIR-NLEGHDKRVATASWNHWNGHILTSGSQD-----KSII 155 (364)
Q Consensus 89 ~v~~~~~s-~~~~~l~~~~~-dg----~i~iw~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~ 155 (364)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|+| +++.|+....+ ..|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence 57789999 99999987654 23 4999999988 6332 121 1234688999 88777666654 2577
Q ss_pred EEEcccCcce-eeeee-cccCcEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCCCCcc-eEEec-ccccceeEEEEcc
Q 040533 156 NHDVRVSNNV-TSRIN-AHTAEVCGLKWSNEGNLLASGG---DDNLVHVWDHSKMSSSKC-LHRFR-DHRAAVKALAWCP 228 (364)
Q Consensus 156 ~~d~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~-~~~~~-~~~~~v~~~~~~~ 228 (364)
++++.++... ...+. ........+.|+|||++|+..+ ....|+++|+..... .. +..+. .......++.|+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-CCCEEESSCCCTTCCEEEEEET
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-CceeEEeecCCCCceEEEeeee
Confidence 7888765421 12222 2234467889999999888765 234688889876421 11 12222 2334455555544
Q ss_pred CCCcEEEeecC--CCCCeEEEEECCCC-eEEE-EEecCC--CeEEEEEcCCccceeeeccCCccCCCC--eEEEeeC
Q 040533 229 YQFNVLASGGG--TQDGCIKIWNVQKG-TCIH-SVDTKA--QICGLEWNRHHKEILSGHGFSSSGDGQ--KLCLWKY 297 (364)
Q Consensus 229 ~~~~~~~~~~g--~~d~~i~i~d~~~~-~~~~-~~~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~~~--~i~i~d~ 297 (364)
+..+++.... .....|..+|+.++ +... .+.... .+..+.+. +..++.... .++ .|.++++
T Consensus 330 -g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~-----~~g~~~l~~~dl 398 (751)
T 2xe4_A 330 -TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGR-----RAGLTRIWTMMA 398 (751)
T ss_dssp -TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEE-----ETTEEEEEEEEC
T ss_pred -CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEE-----eCCEEEEEEEec
Confidence 4455555431 12347888887652 2222 233333 34455554 444443321 144 4666675
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.78 E-value=1.1e-06 Score=82.62 Aligned_cols=242 Identities=12% Similarity=0.039 Sum_probs=132.6
Q ss_pred eeecccCC-Ccc-EEEEEeC--C----eEEEEECCCC-ceeeeeeecCCCCCceEEEEcCCCCEEEEEecC-----CcEE
Q 040533 47 YSNMMDWG-RNN-ILAIALG--L----ELYLWKQENG-EVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA-----SKLQ 112 (364)
Q Consensus 47 ~~~~~~~~-~~~-~~~~~~~--~----~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~ 112 (364)
......|| |++ .++.+.+ | .|+++|+.++ +.... .+. .....++|+|||+.|+....+ ..|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 46678899 875 5654432 2 5999999998 63211 111 123578999999988887765 2588
Q ss_pred EEecCCcce--eeeee-cCCCcEEEEEeecCCCCEEEEeeC---CCcEEEEEcccCc-ce--eeeeecccCcEEEEEEcC
Q 040533 113 LWDAETSKL--IRNLE-GHDKRVATASWNHWNGHILTSGSQ---DKSIINHDVRVSN-NV--TSRINAHTAEVCGLKWSN 183 (364)
Q Consensus 113 iw~~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~-~~--~~~~~~~~~~v~~~~~~~ 183 (364)
++++.++.. ...+. ........+.|+| ++++|+..+. ...|.++|+.++. .. ............++.|+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence 888877642 22222 2234467789999 8888776553 3368888887653 22 222233344556666554
Q ss_pred CCCEEEEEeCC----CeEEEEeCCCCCCCcceEEeccccc--ceeEEEEccCCCcEEEeecCCCCCe--EEEEEC-----
Q 040533 184 EGNLLASGGDD----NLVHVWDHSKMSSSKCLHRFRDHRA--AVKALAWCPYQFNVLASGGGTQDGC--IKIWNV----- 250 (364)
Q Consensus 184 ~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~g~~d~~--i~i~d~----- 250 (364)
.+.+++....+ ..|..+|+......+.. +..+.. .+..+.+. +..++++.. .++. |.++|+
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~--li~~~~~~~l~~~~~~--~~~lv~~~~--~~g~~~l~~~dl~~~~~ 403 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHV--LVDHSEDVFMESIAVR--SNYLVVAGR--RAGLTRIWTMMADSQDG 403 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTCCCCE--EECCCSSEEEEEEEEC--SSEEEEEEE--ETTEEEEEEEECCTTTS
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCcccceee--EECCCCCcEEEEEEEE--CCEEEEEEE--eCCEEEEEEEecccccc
Confidence 44444444333 36777776542111110 122222 34455554 556777665 5664 566675
Q ss_pred --CCCeEEEEEecCCC--eEEEEE----cCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 251 --QKGTCIHSVDTKAQ--ICGLEW----NRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 251 --~~~~~~~~~~~~~~--v~~~~~----~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
.+++....+..... +..+.+ ++++..++.... +...-..++.+|+.+++
T Consensus 404 ~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~s--s~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 404 VFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYS--SLATPNTWFDVSPQDHS 460 (751)
T ss_dssp CCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEE--ETTEEEEEEEECTTTCC
T ss_pred cccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEe--CCCCCCEEEEEECCCCc
Confidence 34431333433322 333433 346655543321 11223567888887665
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=7.9e-06 Score=71.34 Aligned_cols=149 Identities=11% Similarity=0.121 Sum_probs=92.0
Q ss_pred ecccCCC---ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec-CC----cEEEEecCCcc
Q 040533 49 NMMDWGR---NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM-AS----KLQLWDAETSK 120 (364)
Q Consensus 49 ~~~~~~~---~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg----~i~iw~~~~~~ 120 (364)
..++++| +.++++...+.|+.+|+.++....+. ........++|++++++|+++.. ++ .+.+++. .+.
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~---~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY---SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE---CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe---cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 4456664 23455544478889998877654443 24556889999999996666654 22 2333443 333
Q ss_pred ee--eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee-cccCcEEEEEEcCCCCEEEEE-eCCCe
Q 040533 121 LI--RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN-AHTAEVCGLKWSNEGNLLASG-GDDNL 196 (364)
Q Consensus 121 ~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~d~~ 196 (364)
.. ..+.. ......++++|.++.++++-..++.|..++...... ..... ........++|+|++++|+.+ ...+.
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-TPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-EEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 22 22322 234567788885666666666778899999875442 11111 122346789999999955544 46778
Q ss_pred EEEEeCC
Q 040533 197 VHVWDHS 203 (364)
Q Consensus 197 i~iwd~~ 203 (364)
|..++..
T Consensus 294 I~~~~~d 300 (430)
T 3tc9_A 294 ILRSDYD 300 (430)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 9988754
No 284
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.76 E-value=1.5e-06 Score=80.46 Aligned_cols=249 Identities=13% Similarity=0.056 Sum_probs=133.0
Q ss_pred eEEEEcC-CCCEEEEEecCC-----------cEEEEecCCcceee--eeec-CCCcEEEEEeecCCCCEEEEeeC-CCcE
Q 040533 91 TSISWSQ-DAKTLAVGYMAS-----------KLQLWDAETSKLIR--NLEG-HDKRVATASWNHWNGHILTSGSQ-DKSI 154 (364)
Q Consensus 91 ~~~~~s~-~~~~l~~~~~dg-----------~i~iw~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~~l~~~~~-dg~i 154 (364)
.+.++.+ +++.++.|+.+. .+.+||..+++... .+.. +.....++++.+ ++.+++.|+. +..+
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKT 267 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCE
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCce
Confidence 3667777 888888887543 58899998875432 2221 222333466667 8999999984 4589
Q ss_pred EEEEcccCcceeeeeeccc-CcEEEEEEcCCCCEEEEEe-CC-----CeEEEEeCCCCCCCcceEEe--cccccceeEEE
Q 040533 155 INHDVRVSNNVTSRINAHT-AEVCGLKWSNEGNLLASGG-DD-----NLVHVWDHSKMSSSKCLHRF--RDHRAAVKALA 225 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~d-----~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~ 225 (364)
.+||..+..- ......+. ..-.+++..+++++++.|+ .+ ..+.+||..+..- ..+... ......-....
T Consensus 268 ~~yd~~t~~W-~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W-~~~~~~~~~p~~~~~~~~~ 345 (656)
T 1k3i_A 268 SLYDSSSDSW-IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW-TSLPNAKVNPMLTADKQGL 345 (656)
T ss_dssp EEEEGGGTEE-EECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE-EEETTSCSGGGCCCCTTGG
T ss_pred EEecCcCCce-eECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc-eeCCCccccccccccccce
Confidence 9999886642 11111111 1123455667899999988 34 4689999765421 111000 00000000011
Q ss_pred EccCCCcEEEeecC-------CCCCeEEEEECCCCeEEEEEecC----------CCeEEEEEc-CCccceeeeccCCc--
Q 040533 226 WCPYQFNVLASGGG-------TQDGCIKIWNVQKGTCIHSVDTK----------AQICGLEWN-RHHKEILSGHGFSS-- 285 (364)
Q Consensus 226 ~~~~~~~~~~~~~g-------~~d~~i~i~d~~~~~~~~~~~~~----------~~v~~~~~~-~~~~~l~~~~~~~~-- 285 (364)
+..++ .+++.++. .....+..||..+.......... ..-.++.+. .+++.++.|..-..
T Consensus 346 ~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 346 YRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp GTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 12223 33343320 02345788998876644332211 112334443 35666666542100
Q ss_pred cCCCC---eEEEeeCCCCceeeec--cccccc-eeEEeecCCCCEEEEEeCC-----------CcEEEEEeeCCC
Q 040533 286 SGDGQ---KLCLWKYPHMTKWGEL--QHQTSR-ILELSQSPDGLTVVSAAAD-----------ETLRFWEAFGPS 343 (364)
Q Consensus 286 ~~~~~---~i~i~d~~~~~~~~~~--~~~~~~-i~~i~~~~~~~~l~~~~~d-----------g~i~vw~~~~~~ 343 (364)
..... .+.+||..+..-.... ..+... -.+++..|+|++++.|+.+ ..+.+||..+.+
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 00011 6888888765433222 112222 2345667899999999864 468999986643
No 285
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.76 E-value=1.3e-05 Score=66.56 Aligned_cols=223 Identities=11% Similarity=0.037 Sum_probs=130.4
Q ss_pred eeecccCCCcc-EEEEE-eCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC--cEEEEecCCccee
Q 040533 47 YSNMMDWGRNN-ILAIA-LGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS--KLQLWDAETSKLI 122 (364)
Q Consensus 47 ~~~~~~~~~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iw~~~~~~~~ 122 (364)
....++|++++ ++.+. .++.|..||..+. ....... ...+..+++.++|+++++..... .|..++..+++..
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~---~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV---EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC---SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC---CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 45667887754 55554 4689999998764 3333332 34688999999999666554322 4777777777654
Q ss_pred eeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeee---------eecccCcEEEEEEcCCCCEEEEEe
Q 040533 123 RNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSR---------INAHTAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 123 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~ 192 (364)
..... .......++..+ ++..+++-..++.|.++|...+...+.. ....-...+.+ +++++.|+.+.
T Consensus 109 ~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 33221 122234445444 4444555446888888887643211110 00111234555 77877665554
Q ss_pred -CCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE--EEecC-CCeEEE
Q 040533 193 -DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH--SVDTK-AQICGL 268 (364)
Q Consensus 193 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~~~~~-~~v~~~ 268 (364)
..+.|..+|+...........+. .......++++++| .++++.. ..+.|.++|.. ++... .+... ....++
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG-~l~va~~--~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~ 260 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEG-NLYGATH--IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV 260 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTC-CEEEECB--TTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred CCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCC-CEEEEeC--CCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence 56789999986411111112221 11345779999998 5566543 47889999975 65533 23333 558899
Q ss_pred EEc---CCccceeeec
Q 040533 269 EWN---RHHKEILSGH 281 (364)
Q Consensus 269 ~~~---~~~~~l~~~~ 281 (364)
+|. |++..|+++.
T Consensus 261 a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVT 276 (306)
T ss_dssp EECCSTTTTTEEEEEE
T ss_pred EEecccCCCCEEEEEC
Confidence 998 7877776654
No 286
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.74 E-value=1.9e-07 Score=86.57 Aligned_cols=246 Identities=6% Similarity=-0.083 Sum_probs=144.7
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCC----cceeeeeecCCCcE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAET----SKLIRNLEGHDKRV 132 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~----~~~~~~~~~~~~~v 132 (364)
.+..+..+.|+..++.+.+...+.. ....+..++|.+.+..|+.+. ..+.|+.+++.. ......+.......
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~---~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P 455 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 455 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSC---CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--C
T ss_pred eEEecCccceEEEeCCCCcceeeec---cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCc
Confidence 4445556788888888766543332 234577899998777666654 457899999875 22222222222234
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-C-CeEEEEeCCCCCCCcc
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-D-NLVHVWDHSKMSSSKC 210 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~iwd~~~~~~~~~ 210 (364)
..+++.+..++++++-...+.|.++++..... ...+.........+++.|.+..|+.+.. . +.|..+++.....
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--- 531 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--- 531 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC---
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCce-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe---
Confidence 56788753566666656678899999874432 2222222344578899986555555442 2 6777777643211
Q ss_pred eEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC---CCeEEEEEcCCccceeeeccCCccC
Q 040533 211 LHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK---AQICGLEWNRHHKEILSGHGFSSSG 287 (364)
Q Consensus 211 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~ 287 (364)
.......-.....|+|+|++..|+++-. ..+.|..+++........+... .....|++..+ .++... .
T Consensus 532 ~~l~~~~l~~PnGlavd~~~~~LY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd-----~ 602 (699)
T 1n7d_A 532 YSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTD-----I 602 (699)
T ss_dssp CEESCSSCSSCCCEEECTTTCCEEEEET--TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEEC-----S
T ss_pred eEEEeCCCCCccEEEEeccCCEEEEEec--CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEe-----C
Confidence 1111122344678999998878888765 6789999998653332222211 23456666554 333322 2
Q ss_pred CCCeEEEeeCCCCceeeeccccccceeEEeec
Q 040533 288 DGQKLCLWKYPHMTKWGELQHQTSRILELSQS 319 (364)
Q Consensus 288 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 319 (364)
..+.|..++..+++.+..+.........|++.
T Consensus 603 ~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 603 INEAIFSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp TTTCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred CCCeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence 26889999988888777765433334555443
No 287
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.74 E-value=4.4e-05 Score=60.95 Aligned_cols=204 Identities=11% Similarity=0.182 Sum_probs=126.0
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee-cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN-AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
.+.+-...+..++|+|.++.++++...++.|...|.. ++ +...+. .-......+++.+++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 3445556799999999445566667788889988987 44 344432 22256788999988876666556788999987
Q ss_pred CCCCCCcceEEec------ccccceeEEEEccCCCcEEEeecCCCCC-eEEEEEC-CCCeEEEEEec--------CCCeE
Q 040533 203 SKMSSSKCLHRFR------DHRAAVKALAWCPYQFNVLASGGGTQDG-CIKIWNV-QKGTCIHSVDT--------KAQIC 266 (364)
Q Consensus 203 ~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~d~-~i~i~d~-~~~~~~~~~~~--------~~~v~ 266 (364)
........+.... ..+.....++|+|.+..++++.- .+. .|..|+- .....+..+.. -..+.
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E--~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE--KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE--SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC--cCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 6543211122221 12345689999999877777653 333 4555551 11111222211 13578
Q ss_pred EEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc---------ccceeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 267 GLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ---------TSRILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---------~~~i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
+++++|....+++-. .....+..+|.. ++.+..+.-. -.....|+|.++|+ |+..++-+.++++
T Consensus 177 ~l~~dp~tg~lliLS-----~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f 249 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLS-----HESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRF 249 (255)
T ss_dssp EEEEETTTTEEEEEE-----TTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEE
T ss_pred eEEEcCCCCeEEEEE-----CCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEE
Confidence 999999766555443 347888999965 4454443211 12457899999997 4445777766555
Q ss_pred E
Q 040533 338 E 338 (364)
Q Consensus 338 ~ 338 (364)
.
T Consensus 250 ~ 250 (255)
T 3qqz_A 250 T 250 (255)
T ss_dssp E
T ss_pred E
Confidence 4
No 288
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.73 E-value=8.6e-05 Score=67.92 Aligned_cols=246 Identities=11% Similarity=0.007 Sum_probs=154.1
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEE
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLE-GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCG 178 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~ 178 (364)
.+|+.+ ..+.|+..++++......+. ..-..+..++|++.++.++++-..++.|..+++..... .............
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~G 84 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEG 84 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCE
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcce
Confidence 355555 46789999998765433332 12346789999995555566666778899998875432 2223222245678
Q ss_pred EEEcCCCCEE-EEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEE
Q 040533 179 LKWSNEGNLL-ASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIH 257 (364)
Q Consensus 179 ~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~ 257 (364)
+++.+.+..| ++-...+.|.+.++..... + ......-.....++++|....++.+--| ..+.|...++.......
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~--~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHR-Q--VLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTC-E--EEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEE
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcE-E--EEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCceEE
Confidence 8888755544 4445567899999764321 1 1122333456899999976678777521 35788888886554444
Q ss_pred EEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 258 SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 258 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
....-.....+++++++..|+.+. ...+.|..+++..... ..+.........+++.. +...++-...+.|...
T Consensus 161 l~~~~~~P~GlalD~~~~~LY~aD-----~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 161 LVPNVGRANGLTIDYAKRRLYWTD-----LDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERA 233 (628)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred EECCCCCcceEEEccccCEEEEEE-----CCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEE
Confidence 444446688999999888777765 2367899999865443 33333334456788765 3444444457888888
Q ss_pred EeeCCCCCcceeccCCceeee
Q 040533 338 EAFGPSGSGDFVSHLDGLLSL 358 (364)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~ 358 (364)
|..+++....+......+.++
T Consensus 234 dk~tg~~~~~l~~~~~~p~~i 254 (628)
T 4a0p_A 234 NKTSGQNRTIIQGHLDYVMDI 254 (628)
T ss_dssp ETTTCCSCEEEECSCCSCCEE
T ss_pred ECCCCCceEEEecCCCCccee
Confidence 877777665555433333343
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.72 E-value=2.1e-05 Score=68.69 Aligned_cols=200 Identities=9% Similarity=0.009 Sum_probs=112.6
Q ss_pred eecccCCC----ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC-----cEEEEecCC
Q 040533 48 SNMMDWGR----NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS-----KLQLWDAET 118 (364)
Q Consensus 48 ~~~~~~~~----~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~ 118 (364)
...++|++ +.++.+...+.|+.+|..++...... .....+..++++++|+ |+.+...+ .+...+...
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~---~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT---TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC---CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee---cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34567776 23444444488999998887765443 3455689999999999 44444321 233333322
Q ss_pred ccee-eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee-cccCcEEEEEEcCCCCEEEEE-eCCC
Q 040533 119 SKLI-RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN-AHTAEVCGLKWSNEGNLLASG-GDDN 195 (364)
Q Consensus 119 ~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~d~ 195 (364)
+... ..+. .......++++|.++.++++-..++.|+.+|..++........ +....-..++|+|+++.|+.+ ...+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 2110 1122 2234466788885566666666778899999875542111111 112223469999999855554 4567
Q ss_pred eEEEEeCCCCCC-CcceEEeccc---------------ccceeEEEE---------ccCCCcEEEeecCCCCCeEEEEEC
Q 040533 196 LVHVWDHSKMSS-SKCLHRFRDH---------------RAAVKALAW---------CPYQFNVLASGGGTQDGCIKIWNV 250 (364)
Q Consensus 196 ~i~iwd~~~~~~-~~~~~~~~~~---------------~~~v~~~~~---------~~~~~~~~~~~~g~~d~~i~i~d~ 250 (364)
.|+.++...... ......+.+. -.....+++ .+++ .++++-. ..+.|+.++.
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~--~n~~I~~~~~ 372 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDR--DSHTVRVLTP 372 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEET--TTTEEEEECT
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEEC--CCCEEEEECC
Confidence 899987652110 0001111111 123456888 5555 5666644 5788999885
Q ss_pred CCCeEE
Q 040533 251 QKGTCI 256 (364)
Q Consensus 251 ~~~~~~ 256 (364)
++...
T Consensus 373 -~G~v~ 377 (433)
T 4hw6_A 373 -EGRVT 377 (433)
T ss_dssp -TSEEE
T ss_pred -CCCEE
Confidence 56443
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.71 E-value=7.1e-05 Score=70.09 Aligned_cols=236 Identities=11% Similarity=-0.001 Sum_probs=145.4
Q ss_pred EEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc---ceeeeeecccCcEE
Q 040533 101 TLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN---NVTSRINAHTAEVC 177 (364)
Q Consensus 101 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~v~ 177 (364)
+|+.+. ...|+..++........+. ....+..++|.+.++.++++-...+.|+.+++.... .....+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 454443 4568888887665544443 456678999998455555666667788888887431 11223332334567
Q ss_pred EEEEcCCCCEEE-EEeCCCeEEEEeCCCCCCCcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE
Q 040533 178 GLKWSNEGNLLA-SGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC 255 (364)
Q Consensus 178 ~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 255 (364)
.|++.+.+..|+ +-...+.|.+.++.... ...+ .........|+++|.+..|+.+-.| ..+.|...++.....
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~----~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG~~~ 549 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVK----RKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDI 549 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSS----EEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCE
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCe----EEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCCCce
Confidence 899988665444 44567889999976432 2222 2233457899999987678877531 337899999865444
Q ss_pred EEEEecC-CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccc--cccceeEEeecCCCCEEEEE-eCC
Q 040533 256 IHSVDTK-AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQH--QTSRILELSQSPDGLTVVSA-AAD 331 (364)
Q Consensus 256 ~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~-~~d 331 (364)
...+... .....|++++.+..|+.+. ...+.|..+++........+.. .-....+|++. +..|+.+ ...
T Consensus 550 ~~lv~~~l~~P~GLavD~~~~~LYwaD-----~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~ 622 (791)
T 3m0c_C 550 YSLVTENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN 622 (791)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred EEEEeCCCCCceEEEEecCCCeEEEEe-----CCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCC
Confidence 4333333 5688999998877777664 2367899999865443333322 12234566664 3345444 456
Q ss_pred CcEEEEEeeCCCCCcceec
Q 040533 332 ETLRFWEAFGPSGSGDFVS 350 (364)
Q Consensus 332 g~i~vw~~~~~~~~~~~~~ 350 (364)
+.|...+..+++.+..+..
T Consensus 623 ~~I~~~dk~tG~~~~~l~~ 641 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLLAE 641 (791)
T ss_dssp TEEEEEETTTCCCCEEEEC
T ss_pred CEEEEEeCCCCcceEEeec
Confidence 7788888777766666543
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=5.9e-05 Score=66.18 Aligned_cols=245 Identities=11% Similarity=0.026 Sum_probs=141.0
Q ss_pred CceEEEEcC-CCCEEEEEe-cCCcEEEEecCCcceeeeeecC---CCcEEEEEe-------ecCCCCEEEEeeCCC-c--
Q 040533 89 FPTSISWSQ-DAKTLAVGY-MASKLQLWDAETSKLIRNLEGH---DKRVATASW-------NHWNGHILTSGSQDK-S-- 153 (364)
Q Consensus 89 ~v~~~~~s~-~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~~l~~~~~dg-~-- 153 (364)
....|+|+| +...|.++. ..+.|++.|++++......... ......++| ++ +++.|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 356899998 344455544 3467999998877665544322 235889999 99 887565555443 2
Q ss_pred ----EEEEEcccCccee-----eeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCC-------CCCCC--------
Q 040533 154 ----IINHDVRVSNNVT-----SRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHS-------KMSSS-------- 208 (364)
Q Consensus 154 ----i~~~d~~~~~~~~-----~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~-------~~~~~-------- 208 (364)
|.+++........ ..+... .....++++| ++.++++-..++.|..+|+. +....
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 5566533311111 122221 2345778899 45556666678889999986 33220
Q ss_pred ---cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEEC--CCCeEE--EEEecC----------------CCe
Q 040533 209 ---KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNV--QKGTCI--HSVDTK----------------AQI 265 (364)
Q Consensus 209 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~--~~~~~~--~~~~~~----------------~~v 265 (364)
+.+... +.......++|+|++..++++-. ..+.|+.++. ..+... ..+... ...
T Consensus 298 g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~--~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 298 NTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVI--NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp TTEEEEEEC-SSSSCCEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred cccceeEec-CCCCCceEEEEcCCCCEEEEEeC--CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 011111 12344578999999976666654 6788998654 333321 122110 112
Q ss_pred E-EEEEc-------CCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc------------------------ccce
Q 040533 266 C-GLEWN-------RHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ------------------------TSRI 313 (364)
Q Consensus 266 ~-~~~~~-------~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~------------------------~~~i 313 (364)
. .+... +++.+.++-.. ...|+.++ .++. +.++.+. -...
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~------N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P 446 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRL------NFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDV 446 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGG------GTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSE
T ss_pred eEEEEEccccccccCCCeEEEEECC------CCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCC
Confidence 3 44444 44555444332 77888888 4443 3333211 1235
Q ss_pred eEEeecCC-CCEEEEEeCCCcEEEEEeeCCCCCc
Q 040533 314 LELSQSPD-GLTVVSAAADETLRFWEAFGPSGSG 346 (364)
Q Consensus 314 ~~i~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~ 346 (364)
..|+++++ |.++++=..+..|+.+++.......
T Consensus 447 ~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 447 SGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred cEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 78999997 7666666677889999987765443
No 292
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.66 E-value=9.1e-05 Score=60.36 Aligned_cols=271 Identities=8% Similarity=0.060 Sum_probs=174.6
Q ss_pred CCccEEEEEe----CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCC
Q 040533 54 GRNNILAIAL----GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD 129 (364)
Q Consensus 54 ~~~~~~~~~~----~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 129 (364)
..+..+++-. +..|.|.|+..+......... --+.-.+|..+.+|.-. ...++|+|+++...++.+.- .
T Consensus 34 ESDkyicVrE~~~~~~~VvIiDl~n~~~~~Rrpi~-----AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~ 106 (365)
T 2xzh_A 34 ESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-T 106 (365)
T ss_dssp EETTEEEEEEEETTEEEEEEEETTSTTSCEEEECC-----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-S
T ss_pred ecCceEEEEecCCCCCEEEEEECCCCCCccccccc-----cceeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-C
Confidence 3456666653 237888888876543222221 12455699988887765 67899999999998888774 4
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc----CcEEEEEEcCCCCEEEEEeC-------CCeEE
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT----AEVCGLKWSNEGNLLASGGD-------DNLVH 198 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-------d~~i~ 198 (364)
+.|.-=.|- +.+.|+..+. ..|+-|++.....+.+.+..|. ..|.....+++.++++..+- .|.+.
T Consensus 107 e~VvfWkWi--s~~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQ 183 (365)
T 2xzh_A 107 DDVTFWKWI--SLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 183 (365)
T ss_dssp SCEEEEEEC--SSSEEEEEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEE
T ss_pred CccEEEEec--CCCeEEEEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEE
Confidence 677766775 5566666654 4799999986655666665553 56777888889887776542 36788
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEc--cCCCcEEEeec-CCCCCeEEEEECCCC---e-----EEEEEe--c---C
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWC--PYQFNVLASGG-GTQDGCIKIWNVQKG---T-----CIHSVD--T---K 262 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~-g~~d~~i~i~d~~~~---~-----~~~~~~--~---~ 262 (364)
+|..+.. ..+.+.+|......+... +....+++.+. +...+++++.++... . ....+. . .
T Consensus 184 LYS~er~----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~ 259 (365)
T 2xzh_A 184 LYSVDRK----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN 259 (365)
T ss_dssp EEETTTT----EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTT
T ss_pred EEeeccc----ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccC
Confidence 9987653 356677776554443332 12223444332 012368999998432 1 111111 1 1
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
.-..++..++....++.-+. -|.+++||+.++.++..-+-....|..-+-+....=++.....|.|.--.++..
T Consensus 260 DFPVamqvs~kygviyviTK------~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 260 DFPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp CCEEEEEEETTTTEEEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred CceEEEEecccCCEEEEEeC------CcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 22566777777666665543 899999999999999887777777766665554444666668888777777665
Q ss_pred CC
Q 040533 343 SG 344 (364)
Q Consensus 343 ~~ 344 (364)
..
T Consensus 334 ~i 335 (365)
T 2xzh_A 334 NI 335 (365)
T ss_dssp TH
T ss_pred cE
Confidence 44
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.63 E-value=6e-05 Score=68.85 Aligned_cols=238 Identities=13% Similarity=0.065 Sum_probs=137.6
Q ss_pred EEEEEecCCcEEEEecCCcc-eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEE
Q 040533 101 TLAVGYMASKLQLWDAETSK-LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGL 179 (364)
Q Consensus 101 ~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~ 179 (364)
+|+-+ ....|+..++.... ........-.....++|++.++.++++-...+.|..+++.........+.........+
T Consensus 11 ~~~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl 89 (619)
T 3s94_A 11 LLLYA-NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 89 (619)
T ss_dssp CEEEE-CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred eEEEe-ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence 44444 35678888887543 22222223456789999984444444544567888888875432122233333568899
Q ss_pred EEcCCCCEEE-EEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEE
Q 040533 180 KWSNEGNLLA-SGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHS 258 (364)
Q Consensus 180 ~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~ 258 (364)
++.+.+..|+ +-...+.|.+.++..... .......-.....|+++|.+..++.+--| ..+.|...++........
T Consensus 90 AvD~~~~~ly~~d~~~~~I~v~~~dG~~~---~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~~~~l 165 (619)
T 3s94_A 90 ACDWLGEKLYWTDSETNRIEVSNLDGSLR---KVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFII 165 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEE
T ss_pred EEEecCCEEEEEeCCCCEEEEEECCCCCE---EEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCceEEE
Confidence 9998555444 445678999999764321 11122334456789999987678877532 356788888764333333
Q ss_pred Ee-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 259 VD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 259 ~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
.. .-.....+++++++..|+.+. ...+.|..+++..........+.......|++..+ ...++-...+.|...
T Consensus 166 ~~~~~~~P~Glald~~~~~LY~aD-----~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~ 239 (619)
T 3s94_A 166 INSEIYWPNGLTLDYEEQKLYWAD-----AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILAC 239 (619)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEE-----TTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEE
T ss_pred EeCCCCCCcEEEEEccCCEEEEEe-----CCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEE
Confidence 32 234578999999877777664 23678999988654333222222233457777655 344444466789999
Q ss_pred EeeCCCCCccee
Q 040533 338 EAFGPSGSGDFV 349 (364)
Q Consensus 338 ~~~~~~~~~~~~ 349 (364)
|..+++....+.
T Consensus 240 d~~tg~~~~~i~ 251 (619)
T 3s94_A 240 NKYTGEGLREIH 251 (619)
T ss_dssp ESSSCCCCEECC
T ss_pred ECCCCcccEEEe
Confidence 988777655444
No 294
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.55 E-value=8.4e-05 Score=62.33 Aligned_cols=231 Identities=10% Similarity=0.088 Sum_probs=126.6
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECCCCce-eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQENGEV-QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
.+..+.++++.+++++..+.|+. ....++. ........+...+..+.+.+++..++++ .+|.|.. ..+.|+.-...
T Consensus 81 ~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~ 157 (327)
T 2xbg_A 81 RFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQAL 157 (327)
T ss_dssp EEEEEEEETTEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEE
T ss_pred cEEEEEecCCeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEe
Confidence 45566666666677777775554 3333432 2222111233457788887777666655 4565432 22334332222
Q ss_pred -ecCCCcEEEEEeecCCCCEEEEeeCCCcEEE-EEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 126 -EGHDKRVATASWNHWNGHILTSGSQDKSIIN-HDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 126 -~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~-~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
......+..+.+.| ++.+++.+. +|.+.. .|-. +.............+..+.+.+++..++ ++.+|.+++.+..
T Consensus 158 ~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D 233 (327)
T 2xbg_A 158 VQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPD 233 (327)
T ss_dssp ECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETT
T ss_pred ecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCC
Confidence 23456788999998 777776664 444433 3321 2211122223456788999999887554 5567887776422
Q ss_pred CCCCCcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec----CCCeEEEEEcCCcccee
Q 040533 204 KMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT----KAQICGLEWNRHHKEIL 278 (364)
Q Consensus 204 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~ 278 (364)
.+.....+... ......+..+.+.+++ .+++.+. ++.+ ++....++.-..+.. ...+..+.+.+++..++
T Consensus 234 ~G~tW~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g~---~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~ 308 (327)
T 2xbg_A 234 NSENWGELLSPLRRNSVGFLDLAYRTPN-EVWLAGG---AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFI 308 (327)
T ss_dssp EEEEECCCBCTTSSCCSCEEEEEESSSS-CEEEEES---TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEE
T ss_pred CCCeeEeccCCcccCCcceEEEEecCCC-EEEEEeC---CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEE
Confidence 12111111110 0122357888898865 5666653 6766 445555544444431 35678888877777666
Q ss_pred eeccCCccCCCCeEEEee
Q 040533 279 SGHGFSSSGDGQKLCLWK 296 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d 296 (364)
++. +|.|.-++
T Consensus 309 ~G~-------~G~i~~~~ 319 (327)
T 2xbg_A 309 LGQ-------KGILLRYV 319 (327)
T ss_dssp ECS-------TTEEEEEC
T ss_pred EcC-------CceEEEEc
Confidence 653 77776665
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.54 E-value=6.4e-07 Score=83.10 Aligned_cols=228 Identities=11% Similarity=0.017 Sum_probs=132.7
Q ss_pred CCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEe-eCCCcEEEEEcccC---cceeeeeecccCcEEEEEEcC
Q 040533 108 ASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSG-SQDKSIINHDVRVS---NNVTSRINAHTAEVCGLKWSN 183 (364)
Q Consensus 108 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~---~~~~~~~~~~~~~v~~~~~~~ 183 (364)
.+.|+..++.+.+....+.. ...+..++|.+ .+..|+.+ ...+.|..+++... ......+.........|++.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 45788888877665544443 34567899998 55545444 45678999998741 111222211122345678875
Q ss_pred C-CCEEEEEeCCCeEEEEeCCCCCCCcceEEe-cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEE-e
Q 040533 184 E-GNLLASGGDDNLVHVWDHSKMSSSKCLHRF-RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSV-D 260 (364)
Q Consensus 184 ~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~ 260 (364)
. ++++++-...+.|.++++.... ...+ .........++++|.+..++++..+ ..+.|..+++.... ...+ .
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~----~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~-~~~l~~ 536 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVK----RKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVD-IYSLVT 536 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCC----EEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCC-CCEESC
T ss_pred eCCcEEEEeccCCeEEEEecCCCc----eEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCC-eeEEEe
Confidence 4 4445554566789999875421 2222 2223456789999987777776531 23778888775432 2222 1
Q ss_pred c-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc--ccccceeEEeecCCCCEEEEEeCCCcEEEE
Q 040533 261 T-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ--HQTSRILELSQSPDGLTVVSAAADETLRFW 337 (364)
Q Consensus 261 ~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw 337 (364)
. -.....|+++|++..|+.+. ...+.|..+++........+. ........|++..+ .++++....+.|..+
T Consensus 537 ~~l~~PnGlavd~~~~~LY~aD-----~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 537 ENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp SSCSSCCCEEECTTTCCEEEEE-----TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred CCCCCccEEEEeccCCEEEEEe-----cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 1 24467899999887777664 236789999986433322222 11233456666544 344555566889999
Q ss_pred EeeCCCCCccee
Q 040533 338 EAFGPSGSGDFV 349 (364)
Q Consensus 338 ~~~~~~~~~~~~ 349 (364)
+..+++.+..+.
T Consensus 611 d~~~G~~~~~i~ 622 (699)
T 1n7d_A 611 NRLTGSDVNLLA 622 (699)
T ss_dssp ETTTEEEEECCC
T ss_pred EccCCCceEEee
Confidence 876665544443
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.50 E-value=0.00027 Score=64.64 Aligned_cols=232 Identities=7% Similarity=-0.068 Sum_probs=134.2
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcce-eeeeecCCCcEEEE
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKL-IRNLEGHDKRVATA 135 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~-~~~~~~~~~~v~~~ 135 (364)
++.-+....|+..++........... ..-..+..++|++.+..|..+. ..+.|..++++.... ...+...-.....+
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~-~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl 89 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 89 (619)
T ss_dssp CEEEECSSBEEEECCC---------C-BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred eEEEeccccEEEEeCCCCcceEEEEE-cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence 56667788999999876532112222 2344578999999777666554 467888888875532 22333333567889
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCCCcceEE
Q 040533 136 SWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD--DNLVHVWDHSKMSSSKCLHR 213 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~ 213 (364)
++.+.+++++++-...+.|.+.++..... .......-.....+++.|.+..|+.... .+.|...++..... ...
T Consensus 90 AvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~---~~l 165 (619)
T 3s94_A 90 ACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---FII 165 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEE
T ss_pred EEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce---EEE
Confidence 99884555666666778999999875432 2222233345678999997656665553 35677666553211 111
Q ss_pred ecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeE
Q 040533 214 FRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKL 292 (364)
Q Consensus 214 ~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i 292 (364)
....-.....+++++++..++.+-. ..+.|..+|+.......... ......++++..+ .++.+. ...+.|
T Consensus 166 ~~~~~~~P~Glald~~~~~LY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td-----~~~~~V 236 (619)
T 3s94_A 166 INSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTD-----WSTHSI 236 (619)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEET--TTCCEEEESSSCCEEC---------CCCEEESSS--EEEEEC-----TTTCSE
T ss_pred EeCCCCCCcEEEEEccCCEEEEEeC--CCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEec-----CCCCEE
Confidence 2223345688999998778888765 67889999986543332222 1123456676655 333332 225677
Q ss_pred EEeeCCCCcee
Q 040533 293 CLWKYPHMTKW 303 (364)
Q Consensus 293 ~i~d~~~~~~~ 303 (364)
...|..+++..
T Consensus 237 ~~~d~~tg~~~ 247 (619)
T 3s94_A 237 LACNKYTGEGL 247 (619)
T ss_dssp EEEESSSCCCC
T ss_pred EEEECCCCccc
Confidence 77777665443
No 297
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.44 E-value=0.00055 Score=58.18 Aligned_cols=271 Identities=9% Similarity=0.065 Sum_probs=176.2
Q ss_pred CCccEEEEEe----CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCC
Q 040533 54 GRNNILAIAL----GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHD 129 (364)
Q Consensus 54 ~~~~~~~~~~----~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 129 (364)
..+..+++-. +..|.|.|+..+......... --+.-.+|..+.+|.=. ..++.|||+++...++.+.- .
T Consensus 33 ESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~ 105 (494)
T 1bpo_A 33 ESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-T 105 (494)
T ss_dssp EETTEEEEEECCTTCCEEEEEETTSTTSCEEEECC-----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-S
T ss_pred ecCceEEEEecCCCCCeEEEEECCCCCcceecccc-----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-C
Confidence 3456666654 247888888876543222221 22556789888887764 67899999999998888774 4
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeeccc----CcEEEEEEcCCCCEEEEEe-------CCCeEE
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHT----AEVCGLKWSNEGNLLASGG-------DDNLVH 198 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~-------~d~~i~ 198 (364)
+.|.-=.|- +.+.|+..+ +..|+-|++.....+.+.+..|. ..|.....+++.++++..+ -.|.+.
T Consensus 106 e~VvfWkWi--s~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQ 182 (494)
T 1bpo_A 106 DDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 182 (494)
T ss_dssp SCCCEEEEE--ETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEE
T ss_pred CCceEEEec--CCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEE
Confidence 456666675 455666555 35799999986555666665553 5677888889999877554 236788
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccC--CCcEEEeec-CCCCCeEEEEECCCC--------eEEEEEe--c---C
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPY--QFNVLASGG-GTQDGCIKIWNVQKG--------TCIHSVD--T---K 262 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~-g~~d~~i~i~d~~~~--------~~~~~~~--~---~ 262 (364)
+|..+.. ..+.+.+|.+....+....+ ...+++.+. ....+.+++.++... +....+. . .
T Consensus 183 LYS~er~----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~ 258 (494)
T 1bpo_A 183 LYSVDRK----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN 258 (494)
T ss_dssp EEESTTC----CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTT
T ss_pred Eeecccc----ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccccc
Confidence 9987653 35667777765555444321 123444432 012378999998542 1111111 1 1
Q ss_pred CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 263 AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
.-..++..++....++.-+. -|.+++||+.++.++..-+-....|..-+.+....=++.....|.|.--.++..
T Consensus 259 DFPvamqvs~kygviyviTK------~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 259 DFPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp CCEEEEEEETTTTEEEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred CceeEEEecccCCEEEEEec------CceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 22566777877776666543 899999999999999887777777776666655555666668888777777665
Q ss_pred CC
Q 040533 343 SG 344 (364)
Q Consensus 343 ~~ 344 (364)
..
T Consensus 333 ~i 334 (494)
T 1bpo_A 333 NI 334 (494)
T ss_dssp TH
T ss_pred cc
Confidence 43
No 298
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.43 E-value=0.0003 Score=59.63 Aligned_cols=229 Identities=13% Similarity=0.136 Sum_probs=118.9
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcce--eeeee---cCCCcEEEEEeecCC----CCEEEEeeCC-----C
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL--IRNLE---GHDKRVATASWNHWN----GHILTSGSQD-----K 152 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~---~~~~~v~~~~~~~~~----~~~l~~~~~d-----g 152 (364)
-.....++|.|+|+++++ ..+|.|.+++ +++. +..+. ........++|+| + +.+.++-... +
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCcc
Confidence 345789999999985555 5679999998 3432 11111 1245688999999 5 4444443332 5
Q ss_pred cEEEEEcccCc-----ceeeeee---cccCcEEEEEEcCCCCEEEEEeC-------------CCeEEEEeCCCCC-----
Q 040533 153 SIINHDVRVSN-----NVTSRIN---AHTAEVCGLKWSNEGNLLASGGD-------------DNLVHVWDHSKMS----- 206 (364)
Q Consensus 153 ~i~~~d~~~~~-----~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~----- 206 (364)
.|..++..... .+...+. ........++|.|+|.+.++.+. .|.|.-++....-
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 67778776321 1111122 11123368999999976666432 1456666654200
Q ss_pred ------CCcceEEecccccceeEEEEccCCCcEEEeecCCCCC-------eEEEEECCC----------------CeEEE
Q 040533 207 ------SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG-------CIKIWNVQK----------------GTCIH 257 (364)
Q Consensus 207 ------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~-------~i~i~d~~~----------------~~~~~ 257 (364)
....+.. .++ .....++|+|+...++++-.+ .+. .|.+..... ..++.
T Consensus 186 f~~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 186 FLGRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp TTTCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred ccCCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 0011111 122 235678999944456665432 222 233322111 01122
Q ss_pred EEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce------eeeccccccceeEEeecCCCCEEEEEe
Q 040533 258 SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK------WGELQHQTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 258 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~------~~~~~~~~~~i~~i~~~~~~~~l~~~~ 329 (364)
.+..+.....+++ .+|..+++.. ..+.|...++..... ...+-.....+..+++.|||.++++..
T Consensus 263 ~~~~~~ap~G~~~-~~G~l~v~~~------~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FWPQGFPPGNLAF-FRGDLYVAGL------RGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ECTTCCCEEEEEE-ETTEEEEEET------TTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred ecCCCCCCcceEE-ECCEEEEEEC------CCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2222234556666 3455444432 256777777654321 112212235678999999997666653
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.42 E-value=0.00013 Score=60.51 Aligned_cols=194 Identities=11% Similarity=0.200 Sum_probs=121.9
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCC----CC---EEEEEeC---CCeEEEEeCCCCCCCcc
Q 040533 141 NGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE----GN---LLASGGD---DNLVHVWDHSKMSSSKC 210 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---d~~i~iwd~~~~~~~~~ 210 (364)
...+++.....+-+.+||+ .++. +..+.. +.++.+..-|+ |+ ++++... +++|.+|++.... ..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~-l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~--~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKM-LHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--GT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCE-EEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT--CC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcE-EEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC--Cc
Confidence 3456676777889999999 4554 444432 55666666552 22 2333333 5789999764211 11
Q ss_pred eEEecc------cc-cceeEEEE--ccCCC--cEEEeecCCCCCeEEEEECC-------CCeEEEEEecCCCeEEEEEcC
Q 040533 211 LHRFRD------HR-AAVKALAW--CPYQF--NVLASGGGTQDGCIKIWNVQ-------KGTCIHSVDTKAQICGLEWNR 272 (364)
Q Consensus 211 ~~~~~~------~~-~~v~~~~~--~~~~~--~~~~~~~g~~d~~i~i~d~~-------~~~~~~~~~~~~~v~~~~~~~ 272 (364)
+..+.. .. ..+..+++ +|... +++++. .+|.+..|++. +.+.++++...+++..+...+
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~---k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd 189 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG---KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD 189 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC---CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC
Confidence 333311 11 45677887 77543 344443 68999999882 346788888889999999999
Q ss_pred CccceeeeccCCccCCCCeEEEeeCC-----CCceeeecc-cc-ccceeEEee--cCCCC-EEEEEe-CCCcEEEEEee-
Q 040533 273 HHKEILSGHGFSSSGDGQKLCLWKYP-----HMTKWGELQ-HQ-TSRILELSQ--SPDGL-TVVSAA-ADETLRFWEAF- 340 (364)
Q Consensus 273 ~~~~l~~~~~~~~~~~~~~i~i~d~~-----~~~~~~~~~-~~-~~~i~~i~~--~~~~~-~l~~~~-~dg~i~vw~~~- 340 (364)
....|+.+.. +..|..++.. +++.+..+. ++ ...+..|++ .++++ +|++++ .++++.+||..
T Consensus 190 ~~g~Lyv~eE------d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 190 EYGRLYIAEE------DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp TTTEEEEEET------TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred CCCeEEEecc------cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 9888888743 5567777754 344554442 22 235777877 45555 666665 57799999986
Q ss_pred CCCCCccee
Q 040533 341 GPSGSGDFV 349 (364)
Q Consensus 341 ~~~~~~~~~ 349 (364)
+.+.+..|.
T Consensus 264 ~~~~vg~f~ 272 (355)
T 3amr_A 264 KNKYVADFR 272 (355)
T ss_dssp TCCEEEEEE
T ss_pred CCcEEEEEE
Confidence 444455553
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.42 E-value=0.00015 Score=60.28 Aligned_cols=196 Identities=14% Similarity=0.194 Sum_probs=124.0
Q ss_pred CCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCC----C---EEEEeeC---CCcEEEEEcccCcceeee
Q 040533 99 AKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNG----H---ILTSGSQ---DKSIINHDVRVSNNVTSR 168 (364)
Q Consensus 99 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~---~l~~~~~---dg~i~~~d~~~~~~~~~~ 168 (364)
..+++.....+-+.+||+ +|+.++.+.. +.++.+..-| +- + ++++... +++|.+|++......+..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 345555557788999999 7888888764 5677777765 22 1 3344443 478999977422212333
Q ss_pred eec------cc-CcEEEEEE--cCC-CC-EEEEEeCCCeEEEEeCCCC----CCCcceEEecccccceeEEEEccCCCcE
Q 040533 169 INA------HT-AEVCGLKW--SNE-GN-LLASGGDDNLVHVWDHSKM----SSSKCLHRFRDHRAAVKALAWCPYQFNV 233 (364)
Q Consensus 169 ~~~------~~-~~v~~~~~--~~~-~~-~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 233 (364)
+.. .. ..+..+++ +|. +. ++++...+|.+..|++... ...+.++++.. .+.+..+...+....+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence 311 11 45666777 774 43 6788888999999988432 12344566553 4578888898877667
Q ss_pred EEeecCCCCCeEEEEECC-----CCeEEEEEecC---CCeEEEEE--cCCcc-ceeeeccCCccCCCCeEEEeeCC-CCc
Q 040533 234 LASGGGTQDGCIKIWNVQ-----KGTCIHSVDTK---AQICGLEW--NRHHK-EILSGHGFSSSGDGQKLCLWKYP-HMT 301 (364)
Q Consensus 234 ~~~~~g~~d~~i~i~d~~-----~~~~~~~~~~~---~~v~~~~~--~~~~~-~l~~~~~~~~~~~~~~i~i~d~~-~~~ 301 (364)
++.- ++.-|..++.+ +++.+..+... ..+..|++ .++++ +|++++ ..++...+||.. +.+
T Consensus 195 yv~e---Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs-----QG~~s~~Vydr~~~~~ 266 (355)
T 3amr_A 195 YIAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS-----QGNSSYAIYDRQGKNK 266 (355)
T ss_dssp EEEE---TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE-----GGGTEEEEEESSTTCC
T ss_pred EEec---ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc-----CCCCEEEEEECCCCCc
Confidence 6643 56557777754 34556555333 46788887 45555 555543 227899999996 666
Q ss_pred eeeecc
Q 040533 302 KWGELQ 307 (364)
Q Consensus 302 ~~~~~~ 307 (364)
.+..+.
T Consensus 267 ~vg~f~ 272 (355)
T 3amr_A 267 YVADFR 272 (355)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666664
No 301
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.38 E-value=0.00051 Score=60.32 Aligned_cols=154 Identities=11% Similarity=0.115 Sum_probs=94.4
Q ss_pred ecccCCC---ccEEEEEeC-CeEEEEECCCCceeeeeeecC-CCCCceEEEE-------cCCCCEEEEEecCC-------
Q 040533 49 NMMDWGR---NNILAIALG-LELYLWKQENGEVQKLLKVTG-EDDFPTSISW-------SQDAKTLAVGYMAS------- 109 (364)
Q Consensus 49 ~~~~~~~---~~~~~~~~~-~~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~-------s~~~~~l~~~~~dg------- 109 (364)
..|+++| ++++++... +.|++.|.+++.+..+..... ....+..++| +++++.|+++...+
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~ 221 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP 221 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence 3456665 235444443 579999999888766554321 2345899999 99999776665543
Q ss_pred cEEEEecCC-ccee-----eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc-------cCcc-----------e
Q 040533 110 KLQLWDAET-SKLI-----RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR-------VSNN-----------V 165 (364)
Q Consensus 110 ~i~iw~~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~-------~~~~-----------~ 165 (364)
.|.+++... +... ..+... .....++.+|.++.++++-..++.|..+|+. ++.. .
T Consensus 222 ~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~ 300 (496)
T 3kya_A 222 SVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTF 300 (496)
T ss_dssp EEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTE
T ss_pred eEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccccc
Confidence 266665443 2221 222211 2335678888566777777788899999997 3432 0
Q ss_pred eeeee-cccCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCC
Q 040533 166 TSRIN-AHTAEVCGLKWSNEGNLLASG-GDDNLVHVWDHS 203 (364)
Q Consensus 166 ~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~ 203 (364)
...+. ........++|+|+++.|+.+ ...+.|+.++..
T Consensus 301 ~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 301 KQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 01111 223446789999999955444 456788886643
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.25 E-value=0.0011 Score=54.64 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=106.6
Q ss_pred ceeecccCCC--ccEEEEE-eCCeEEEEECCCCceeeeeeecC----CC--CCceEEEE---cCCCCEEEEEec------
Q 040533 46 YYSNMMDWGR--NNILAIA-LGLELYLWKQENGEVQKLLKVTG----ED--DFPTSISW---SQDAKTLAVGYM------ 107 (364)
Q Consensus 46 ~~~~~~~~~~--~~~~~~~-~~~~i~iw~~~~~~~~~~~~~~~----~~--~~v~~~~~---s~~~~~l~~~~~------ 107 (364)
.|.-+..|++ +.++.++ ..+.|..|+..++....+ .+.+ .. ..+..+.| .|+++++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3566788876 3355555 589999999986655444 3332 11 13579999 688777775432
Q ss_pred -------CCcEEEEecC---Ccceeeeee--c-----------CCCcEEEEEeecCCCCEEEEeeCC-CcEEEEEcccCc
Q 040533 108 -------ASKLQLWDAE---TSKLIRNLE--G-----------HDKRVATASWNHWNGHILTSGSQD-KSIINHDVRVSN 163 (364)
Q Consensus 108 -------dg~i~iw~~~---~~~~~~~~~--~-----------~~~~v~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~ 163 (364)
+..|..||+. +++.+.... . -......++..+ +|+..++++.. +.|...+....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~- 169 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGK- 169 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSC-
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCC-
Confidence 5779999998 777665443 1 112478999999 99999988888 88777776533
Q ss_pred ceeeeeec-----ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 164 NVTSRINA-----HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 164 ~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
........ .....+.|+++|+++.|++....|.+..+|++.
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 21211111 112356899999999888887799999999874
No 303
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.16 E-value=0.0015 Score=54.95 Aligned_cols=184 Identities=8% Similarity=0.014 Sum_probs=110.9
Q ss_pred CceEEEEcCCCCEEEEE------------ecCCcEEEEecCCc--ceee-eeec-----CCCcEEEEEeecC-CCC--EE
Q 040533 89 FPTSISWSQDAKTLAVG------------YMASKLQLWDAETS--KLIR-NLEG-----HDKRVATASWNHW-NGH--IL 145 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~------------~~dg~i~iw~~~~~--~~~~-~~~~-----~~~~v~~~~~~~~-~~~--~l 145 (364)
...+++..|+|..++++ ..+|.|.++|.++. +... .+.+ ..-....+.+.++ ++. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45577778877544443 16899999998742 2211 1222 1235677777652 232 44
Q ss_pred EEeeC--CCcEEEEEcccCcceee---eeec-ccCcEEEEEEcCCCCEEEEEe-----------------CCCeEEEEeC
Q 040533 146 TSGSQ--DKSIINHDVRVSNNVTS---RINA-HTAEVCGLKWSNEGNLLASGG-----------------DDNLVHVWDH 202 (364)
Q Consensus 146 ~~~~~--dg~i~~~d~~~~~~~~~---~~~~-~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~ 202 (364)
++-.. +.+|.+|++........ .+.+ .-...+.+.+.++|.+.++.. ..|.|..+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 46788888776543222 2222 124578999999998776653 1245666663
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-CeE--EEEEecCCCeEEEEEcC-Ccccee
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-GTC--IHSVDTKAQICGLEWNR-HHKEIL 278 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~--~~~~~~~~~v~~~~~~~-~~~~l~ 278 (364)
. . +..+...-...+.++|+|+++.++++-+ ..+.|..|++.. ++. .+.+......-.+++.+ +|.+.+
T Consensus 211 ~---~---~~~~~~~l~~pNGia~spDg~~lYvadt--~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 211 N---D---VRVVAEGFDFANGINISPDGKYVYIAEL--LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp T---C---CEEEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred C---e---EEEeecCCcccCcceECCCCCEEEEEeC--CCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEE
Confidence 2 1 2333333445688999999988888765 678999999863 332 23444456678889998 588776
Q ss_pred ee
Q 040533 279 SG 280 (364)
Q Consensus 279 ~~ 280 (364)
++
T Consensus 283 a~ 284 (355)
T 3sre_A 283 GC 284 (355)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.15 E-value=0.0025 Score=53.87 Aligned_cols=232 Identities=14% Similarity=0.151 Sum_probs=122.6
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc-eeeee---ecCCCcEEEEEeecC---CCCEEEEeeC---C----C
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK-LIRNL---EGHDKRVATASWNHW---NGHILTSGSQ---D----K 152 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~---~~~~~~v~~~~~~~~---~~~~l~~~~~---d----g 152 (364)
-.....++|.|+|+++++ ..+|.|.+++ .+++ .+..+ .........++++|. ++.+.++-+. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345789999999985554 5679999997 3454 22221 112356889999993 2444444332 3 5
Q ss_pred cEEEEEcccCc------c-eeeeeec-ccCcEEEEEEcCCCCEEEEEeC-------------CCeEEEEeCCCCCC----
Q 040533 153 SIINHDVRVSN------N-VTSRINA-HTAEVCGLKWSNEGNLLASGGD-------------DNLVHVWDHSKMSS---- 207 (364)
Q Consensus 153 ~i~~~d~~~~~------~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~~---- 207 (364)
.|..++..... . +...+.. .......++|.|+|.+.++.+. .|.|.-++....-.
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 67777765431 1 1111211 1123467999999987666442 24565555432100
Q ss_pred --CcceEEecccccceeEEEEccCCCcEEEeecCCCCC--eEEEEECCC--------C--------eEEEEE-ecCCCeE
Q 040533 208 --SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDG--CIKIWNVQK--------G--------TCIHSV-DTKAQIC 266 (364)
Q Consensus 208 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~--------~--------~~~~~~-~~~~~v~ 266 (364)
...+.. .++. ....++|+|+...++++-.+ .+. .|.+..... + .++..+ ..+....
T Consensus 186 f~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g-~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 186 FPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHG-PVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp STTCCEEE-ECCS-CCCEEEECTTTCCEEEEECC-SSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCCcEEE-EccC-CcceEEEeCCCCCEEEEecC-CCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 001111 1222 34689999944466665432 221 233332110 0 122222 2234567
Q ss_pred EEEEc-------CCccceeeeccCCccCCCCeEEEeeCCCC-cee--eec-cccccceeEEeecCCCCEEEEEe
Q 040533 267 GLEWN-------RHHKEILSGHGFSSSGDGQKLCLWKYPHM-TKW--GEL-QHQTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 267 ~~~~~-------~~~~~l~~~~~~~~~~~~~~i~i~d~~~~-~~~--~~~-~~~~~~i~~i~~~~~~~~l~~~~ 329 (364)
.+++. .+|.++++... .+.|...++... +.. ..+ ......+..+++.|||.+.++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~------~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLR------GSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETT------TTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcC------CCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 77773 45555554432 677888777643 221 122 22235688999999997666654
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.11 E-value=0.00057 Score=56.27 Aligned_cols=165 Identities=12% Similarity=0.191 Sum_probs=107.7
Q ss_pred eeecCCCCCceEEEEcCCCCEEEEEe-cCCcEEEEecCCcceeee-eec----CC--CcEEEEEe---ecCCCCEEEEee
Q 040533 81 LKVTGEDDFPTSISWSQDAKTLAVGY-MASKLQLWDAETSKLIRN-LEG----HD--KRVATASW---NHWNGHILTSGS 149 (364)
Q Consensus 81 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~-~~~----~~--~~v~~~~~---~~~~~~~l~~~~ 149 (364)
+.+........+++|.+....|..++ ..|+|..|+...+..... +.. .. ..+..+.| .| ++.++++..
T Consensus 6 i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~ 84 (334)
T 2p9w_A 6 IDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMK 84 (334)
T ss_dssp EEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEE
T ss_pred EEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEc
Confidence 34445566677899988666666666 789999999876543332 221 11 14678999 58 677777544
Q ss_pred C-------------CCcEEEEEcc---cCcceee-eeecc-----------cCcEEEEEEcCCCCEEEEEeCC-CeEEEE
Q 040533 150 Q-------------DKSIINHDVR---VSNNVTS-RINAH-----------TAEVCGLKWSNEGNLLASGGDD-NLVHVW 200 (364)
Q Consensus 150 ~-------------dg~i~~~d~~---~~~~~~~-~~~~~-----------~~~v~~~~~~~~~~~l~~~~~d-~~i~iw 200 (364)
. +..|..||+. +++.... .+... ......++..++|+..++++.. +.|...
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV 164 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence 2 5779999998 5553222 11111 1247899999999999988887 887777
Q ss_pred eCCCCCCCcceEEec------ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC
Q 040533 201 DHSKMSSSKCLHRFR------DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253 (364)
Q Consensus 201 d~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 253 (364)
+.... .+..+. ......+.|+++|++..|++.. ..+.+..+|+.+.
T Consensus 165 ~pdG~----~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~---~~g~L~~fD~~~p 216 (334)
T 2p9w_A 165 SADGK----TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG---GPRALTAFDVSKP 216 (334)
T ss_dssp CTTSC----CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES---SSSSEEEEECSSS
T ss_pred eCCCC----EEeeeeecCCCcccccCcceEEEeCCCCEEEEEc---CCCeEEEEcCCCC
Confidence 65422 122211 1122366899999996666654 3899999998853
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.08 E-value=0.0024 Score=53.99 Aligned_cols=221 Identities=14% Similarity=0.056 Sum_probs=116.2
Q ss_pred CcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc-eeeee---ecccCcEEEEEEcCC---CCEEEEEeCC------Ce
Q 040533 130 KRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN-VTSRI---NAHTAEVCGLKWSNE---GNLLASGGDD------NL 196 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~d------~~ 196 (364)
.....++|.| +++++++ ..+|.|.+++ .+.. .+..+ .........++|+|+ +..|+++... +.
T Consensus 31 ~~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 4567899999 8885554 5669999988 2321 11111 112356889999998 5555554432 56
Q ss_pred EEEEeCCCCCC--Ccce-EEec---ccccceeEEEEccCCCcEEEeec-C----------CCCCeEEEEECCCC------
Q 040533 197 VHVWDHSKMSS--SKCL-HRFR---DHRAAVKALAWCPYQFNVLASGG-G----------TQDGCIKIWNVQKG------ 253 (364)
Q Consensus 197 i~iwd~~~~~~--~~~~-~~~~---~~~~~v~~~~~~~~~~~~~~~~~-g----------~~d~~i~i~d~~~~------ 253 (364)
|..++...... .+.+ ..+. ........++|.|+| .++++.+ + +..|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 77887653211 1111 1122 111234689999999 5655532 0 01256666665430
Q ss_pred --------eEEEEEecCCCeEEEEEcC-CccceeeeccCCccCCCC-------eEEEeeCCC----------------Cc
Q 040533 254 --------TCIHSVDTKAQICGLEWNR-HHKEILSGHGFSSSGDGQ-------KLCLWKYPH----------------MT 301 (364)
Q Consensus 254 --------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~-------~i~i~d~~~----------------~~ 301 (364)
..+.. ........++|+| ++.+.++-.+ .+. .|.+..... ..
T Consensus 186 f~~~~~~~~~i~a-~G~rnp~g~a~d~~~g~l~v~d~g-----~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~ 259 (352)
T 2ism_A 186 FLGRRGARPEVYS-LGHRNPQGLAWHPKTGELFSSEHG-----PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD 259 (352)
T ss_dssp TTTCTTSCTTEEE-ECCSEECCCEECTTTCCEEEEEEC-----C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred ccCCCCCCccEEE-EcCCCcccEEEECCCCCEEEEEcC-----CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence 11111 1223467889999 5554443321 122 243332111 01
Q ss_pred eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCC------CcceeccCCceeeeeeccC
Q 040533 302 KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSG------SGDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 302 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~------~~~~~~~~~~v~~~~~sp~ 363 (364)
++..+..| .....++| .+|.++++.-..+.|...++..... ...+......+.++++.|.
T Consensus 260 p~~~~~~~-~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 325 (352)
T 2ism_A 260 PLYFWPQG-FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPD 325 (352)
T ss_dssp CSEECTTC-CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTT
T ss_pred CeEecCCC-CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCC
Confidence 22233222 23567777 4676666666677788888775442 1222222356788888774
No 307
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.08 E-value=0.0036 Score=52.95 Aligned_cols=239 Identities=13% Similarity=0.141 Sum_probs=123.1
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeee---e----ecCCCcEEEEEeecC---CCCEEEEeeC-------C
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRN---L----EGHDKRVATASWNHW---NGHILTSGSQ-------D 151 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~~l~~~~~-------d 151 (364)
....|+|.|+|+.|+++...|.|++++.. +..... + .........++++|+ ++.+.++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 46899999999834445568999999853 332111 1 112345789999983 3444444332 2
Q ss_pred CcEEEEEcccCc----ceeeeeec------ccCcEEEEEEcCCCCEEEEEeC-------------CCeEEEEeCCCCC--
Q 040533 152 KSIINHDVRVSN----NVTSRINA------HTAEVCGLKWSNEGNLLASGGD-------------DNLVHVWDHSKMS-- 206 (364)
Q Consensus 152 g~i~~~d~~~~~----~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~-- 206 (364)
..|..+++.... .....+.. .......++|.|+|.+.++.+. .|.|.-++....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 356666664321 11111111 1112357999999965555433 2467666654210
Q ss_pred ---------CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC------------------------
Q 040533 207 ---------SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG------------------------ 253 (364)
Q Consensus 207 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~------------------------ 253 (364)
....+.. .++ .....++|+|....++++-.+ .++.=.|.-+..+
T Consensus 178 ~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp TCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 0011111 122 235789999943366665321 2221122222111
Q ss_pred -------eEEEEEecCCCeEEEEEcC-------CccceeeeccCCccCCCCeEEEeeCCCCceeee---ccccccceeEE
Q 040533 254 -------TCIHSVDTKAQICGLEWNR-------HHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGE---LQHQTSRILEL 316 (364)
Q Consensus 254 -------~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~---~~~~~~~i~~i 316 (364)
.++..+..+.....+.+.. +|.++++... .+.|...++..++.... +......+..+
T Consensus 255 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v 328 (353)
T 2g8s_A 255 EIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALK------DKDVIVMSVNGDKVTEDGRILTDRGQRIRDV 328 (353)
T ss_dssp SSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETT------TTEEEEEEEETTEEEEEEEESGGGCCCEEEE
T ss_pred CCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEcc------CCEEEEEEeCCCeEeeeEEcccCCCCceeEE
Confidence 1122233334566677754 3555554432 67777777765443322 22223468899
Q ss_pred eecCCCCEEEEEe-CCCcEEEEEe
Q 040533 317 SQSPDGLTVVSAA-ADETLRFWEA 339 (364)
Q Consensus 317 ~~~~~~~~l~~~~-~dg~i~vw~~ 339 (364)
++.|||.++++.. .+| +||.+
T Consensus 329 ~~~pdG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 329 RTGPDGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp EECTTSCEEEEECSTTE--EEEEE
T ss_pred EECCCCcEEEEEeCCCC--EEEEE
Confidence 9999998666433 344 45554
No 308
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.03 E-value=0.013 Score=57.49 Aligned_cols=289 Identities=8% Similarity=0.039 Sum_probs=156.6
Q ss_pred EEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCC------CCEEEEEec-CCcEEEEecCCcceeeeeec-CC
Q 040533 58 ILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQD------AKTLAVGYM-ASKLQLWDAETSKLIRNLEG-HD 129 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~-~~ 129 (364)
.++.+.++.+.++++..++....... .-...|.|+++.|. ++++|+|.. |++|+|+++.+.+.+....- ..
T Consensus 525 ~vvva~g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~ 603 (1158)
T 3ei3_A 525 QVVVAVGRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE 603 (1158)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS
T ss_pred EEEEEECCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC
Confidence 34344577888888776654433332 23567999999863 369999996 99999999987665543221 11
Q ss_pred CcEEEEEeecC-CCCEEEEeeCCCcEEEEEccc--Ccce--eeeeecccCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCC
Q 040533 130 KRVATASWNHW-NGHILTSGSQDKSIINHDVRV--SNNV--TSRINAHTAEVCGLKWSNEGN-LLASGGDDNLVHVWDHS 203 (364)
Q Consensus 130 ~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~--~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~ 203 (364)
....++.+... ...+|..|-.||.+..+.++. +... .....+ ..++.-..+...+. .+++.+ +....++.-+
T Consensus 604 ~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~ 681 (1158)
T 3ei3_A 604 IIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN 681 (1158)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS
T ss_pred CCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC
Confidence 23444444321 345788999999887666543 2211 111222 23444444443333 233333 4444444322
Q ss_pred CCCCCcceEEeccccccee-EEEEccCC--CcEEEeecCCCCCeEEEEECCC--CeEEEEEecCCCeEEEEEcCCcccee
Q 040533 204 KMSSSKCLHRFRDHRAAVK-ALAWCPYQ--FNVLASGGGTQDGCIKIWNVQK--GTCIHSVDTKAQICGLEWNRHHKEIL 278 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~-~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~ 278 (364)
. +.... .-....+. ...|+... ..++++ .++.++|..+.+ .-.++++.....+..++++|..+.++
T Consensus 682 ~----~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~----~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~ 752 (1158)
T 3ei3_A 682 H----KLVFS-NVNLKEVNYMCPLNSDGYPDSLALA----NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFG 752 (1158)
T ss_dssp S----SEEEE-EBSSSCCCEEEEECCSSSTTEEEEE----CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEE
T ss_pred C----ceEEe-ccChHHhceEeccCcccCCCcEEEE----cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEE
Confidence 1 11111 11112232 23343221 124333 356688887754 33456667777888888888777655
Q ss_pred eeccCC----c-c--------------------------------------CCCCeEEEeeCCCCceeeecccc-cccee
Q 040533 279 SGHGFS----S-S--------------------------------------GDGQKLCLWKYPHMTKWGELQHQ-TSRIL 314 (364)
Q Consensus 279 ~~~~~~----~-~--------------------------------------~~~~~i~i~d~~~~~~~~~~~~~-~~~i~ 314 (364)
.+..-. . + ...+.|++.|..+.+.+..++-. ...+.
T Consensus 753 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~ 832 (1158)
T 3ei3_A 753 VLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYAL 832 (1158)
T ss_dssp EEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEE
T ss_pred EEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceE
Confidence 432100 0 0 01246888888888876655422 22344
Q ss_pred EE---eecCC-CCEEEEEe----------CCCcEEEEEeeCCCCCccee--ccCCceeeee
Q 040533 315 EL---SQSPD-GLTVVSAA----------ADETLRFWEAFGPSGSGDFV--SHLDGLLSLK 359 (364)
Q Consensus 315 ~i---~~~~~-~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~--~~~~~v~~~~ 359 (364)
++ .|..+ ..+|++|+ ..|.|.+|++..++ +..+. ...++|++++
T Consensus 833 sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~lv~~~~v~g~v~al~ 892 (1158)
T 3ei3_A 833 SLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQTVAEKEVKGAVYSMV 892 (1158)
T ss_dssp EEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-EEEEEEEEESSCEEEEE
T ss_pred EEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-EEEEEEEEcCCcCEEEe
Confidence 44 44333 46888886 34889999998432 22221 2356677664
No 309
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.00 E-value=0.0015 Score=53.83 Aligned_cols=232 Identities=13% Similarity=0.103 Sum_probs=112.7
Q ss_pred CCCEEEEEe-cC-----CcEEEEecCCcceeee--eecCCCcEEEEEeecCCCCEEEEeeCC-----CcEEEEEcccCc-
Q 040533 98 DAKTLAVGY-MA-----SKLQLWDAETSKLIRN--LEGHDKRVATASWNHWNGHILTSGSQD-----KSIINHDVRVSN- 163 (364)
Q Consensus 98 ~~~~l~~~~-~d-----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~- 163 (364)
++.+++.|+ .+ ..+.+||..+.+.... +.........+.. ++.+++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL---HDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE---CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 445666666 33 3688999887653322 2211112222222 67788888765 368899987665
Q ss_pred --ce-eeeeecccCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 164 --NV-TSRINAHTAEVCGLKWSNEGNLLASGGDD-----NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 164 --~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
-. ...+.........+.+ ++++++.|+.+ ..+.+||+.+..- ..+..+.........+.+ ++ .+++
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv 164 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW-SMLGDMQTAREGAGLVVA--SG-VIYC 164 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE-EEEEECSSCCBSCEEEEE--TT-EEEE
T ss_pred CeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE-EECCCCCCCcccceEEEE--CC-EEEE
Confidence 21 1111111111122222 56677777643 3688899765432 222222211111122222 33 6777
Q ss_pred eecCC---CCCeEEEEECCCCeEEEEEecCCC--eEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce--eeeccc
Q 040533 236 SGGGT---QDGCIKIWNVQKGTCIHSVDTKAQ--ICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK--WGELQH 308 (364)
Q Consensus 236 ~~~g~---~d~~i~i~d~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~--~~~~~~ 308 (364)
.|+.. .-..+.+||+.+.+-...-....+ -.++... +++.++.|.. ........+.+||+.+.+- +..+..
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~p~ 242 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGGF-DGTAHLSSVEAYNIRTDSWTTVTSMTT 242 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCB-CSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeCC-CCCcccceEEEEeCCCCcEEECCCCCC
Confidence 76511 125689999988754433211111 1122222 4455555432 1111145789999876542 222221
Q ss_pred cccceeEEeecCCCCEEEEEeCCC-----cEEEEEeeCC
Q 040533 309 QTSRILELSQSPDGLTVVSAAADE-----TLRFWEAFGP 342 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg-----~i~vw~~~~~ 342 (364)
.......+.+ ++++++.|+.++ .+.+||+.+.
T Consensus 243 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 243 PRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred cccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 1111122222 677777777653 4677776654
No 310
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.99 E-value=0.0012 Score=56.07 Aligned_cols=144 Identities=10% Similarity=0.077 Sum_probs=99.2
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecC--CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc------------e
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTG--EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK------------L 121 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------------~ 121 (364)
+.-+..+.++.|+.-++......+.+..+. .-..|..+..||+|++||..+ +..|.|-.+..+. .
T Consensus 32 ~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q 110 (452)
T 3pbp_A 32 GTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ 110 (452)
T ss_dssp TTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred CCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccc
Confidence 445666678999999988555555666543 233688999999999999986 5689999887331 1
Q ss_pred eeeeec------CCCcEEEEEeecCC--CCEEEEeeCCCcEEEEEcccCcceeeeee---------cccCcEEEEEEcCC
Q 040533 122 IRNLEG------HDKRVATASWNHWN--GHILTSGSQDKSIINHDVRVSNNVTSRIN---------AHTAEVCGLKWSNE 184 (364)
Q Consensus 122 ~~~~~~------~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---------~~~~~v~~~~~~~~ 184 (364)
.+.+.- ...+|..+.|+|.. +..|++-..|+.|++||+.........+. .....|.+++|.++
T Consensus 111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~ 190 (452)
T 3pbp_A 111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKD 190 (452)
T ss_dssp EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTT
T ss_pred eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCC
Confidence 112221 24679999999942 45899999999999999985321111111 12257889999998
Q ss_pred CCEEEEEe--CCCeEEEE
Q 040533 185 GNLLASGG--DDNLVHVW 200 (364)
Q Consensus 185 ~~~l~~~~--~d~~i~iw 200 (364)
+-.|...+ +.|.|+-.
T Consensus 191 ~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 191 GLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SSCEEEEECTTSCEEEEE
T ss_pred CcEEEEEecCCCCCEEEE
Confidence 76666644 77888754
No 311
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.93 E-value=0.0034 Score=61.50 Aligned_cols=276 Identities=8% Similarity=0.057 Sum_probs=165.9
Q ss_pred cccCCCccEEEEEe----CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeee
Q 040533 50 MMDWGRNNILAIAL----GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNL 125 (364)
Q Consensus 50 ~~~~~~~~~~~~~~----~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 125 (364)
.+.+.++..+++-. +..|.|.|+..+......... --+.-.+|..+.+|.=. ..++.|||+++...++.+
T Consensus 29 ~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~ 102 (1630)
T 1xi4_A 29 TLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH 102 (1630)
T ss_pred ceeeecCceEEEEecCCCCceEEEEECCCCCCccccccc-----chhhccCCCcceEEEec-CCeEEEeehHHhhhhccc
Confidence 34444466666543 247888888876543222121 12345688888777664 678999999998888776
Q ss_pred ecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecc----cCcEEEEEEcCCCCEEEEEe-------CC
Q 040533 126 EGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAH----TAEVCGLKWSNEGNLLASGG-------DD 194 (364)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~d 194 (364)
.- ..+|.-=.|- +.+.|+..+ +..|..|++.....+...+..| ...|.....+++.++++..| -.
T Consensus 103 ~~-~e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~ 178 (1630)
T 1xi4_A 103 TM-TDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV 178 (1630)
T ss_pred cc-CCCceEEEec--CCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCccc
Confidence 63 4566666665 455555554 3479999997655555555544 45677778888888877554 34
Q ss_pred CeEEEEeCCCCCCCcceEEecccccceeEEEEc--cCCCcEEEeecC-CCCCeEEEEECCCC---eEEE---E--E--ec
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWC--PYQFNVLASGGG-TQDGCIKIWNVQKG---TCIH---S--V--DT 261 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~g-~~d~~i~i~d~~~~---~~~~---~--~--~~ 261 (364)
|.+.+|..+... .+.+.+|.+....+... +....+++.+.. ...+.++|.++... .+.. . + ..
T Consensus 179 G~mQLyS~er~~----sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~ 254 (1630)
T 1xi4_A 179 GAMQLYSVDRKV----SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP 254 (1630)
T ss_pred ceeeeeeccccc----chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCc
Confidence 788899876532 44556666554444432 222234443320 12368888888542 1110 0 0 11
Q ss_pred ---CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEE
Q 040533 262 ---KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWE 338 (364)
Q Consensus 262 ---~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~ 338 (364)
..-..++..++....++.-+. -|.+.+||+.++.++..-+-...+|...+-+....=++.....|.|.--.
T Consensus 255 ~~~~Dfpv~~~vs~k~g~iy~itk------~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~ 328 (1630)
T 1xi4_A 255 EAQNDFPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVC 328 (1630)
T ss_pred ccccCcceEEEeccccCEEEEEec------CceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEE
Confidence 112345666666665555433 89999999999998877665566666555544333344455677766666
Q ss_pred eeCCCCC
Q 040533 339 AFGPSGS 345 (364)
Q Consensus 339 ~~~~~~~ 345 (364)
+.....+
T Consensus 329 v~~~~iv 335 (1630)
T 1xi4_A 329 VEEENII 335 (1630)
T ss_pred Eccchhh
Confidence 6554443
No 312
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.90 E-value=0.0066 Score=51.02 Aligned_cols=165 Identities=13% Similarity=0.102 Sum_probs=96.3
Q ss_pred eCCeEEEEECCC--CceeeeeeecC-----CCCCceEEEEcC--CCC-EEEEE-ec--CCcEEEEecCCcc----eeeee
Q 040533 63 LGLELYLWKQEN--GEVQKLLKVTG-----EDDFPTSISWSQ--DAK-TLAVG-YM--ASKLQLWDAETSK----LIRNL 125 (364)
Q Consensus 63 ~~~~i~iw~~~~--~~~~~~~~~~~-----~~~~v~~~~~s~--~~~-~l~~~-~~--dg~i~iw~~~~~~----~~~~~ 125 (364)
.+|.|.++|.++ .+... +.+.+ ..-....+.+.+ ++. +|+++ .. +..|.+|+++... .+..+
T Consensus 81 ~~G~I~~~d~~~~~~~~~~-l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSE-LEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEE-CEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEE-EEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 578999999874 33332 23333 224667788765 454 44444 22 4678888876532 22233
Q ss_pred ecC-CCcEEEEEeecCCCCEEEEee-----------------CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCE
Q 040533 126 EGH-DKRVATASWNHWNGHILTSGS-----------------QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNL 187 (364)
Q Consensus 126 ~~~-~~~v~~~~~~~~~~~~l~~~~-----------------~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 187 (364)
.+. -...+.+.+.+ ++.+.++.. ..|.|..+|. ++ .......-...+.++|+||++.
T Consensus 160 ~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~--~~~~~~~l~~pNGia~spDg~~ 234 (355)
T 3sre_A 160 RHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND--VRVVAEGFDFANGINISPDGKY 234 (355)
T ss_dssp CCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC--CEEEEEEESSEEEEEECTTSSE
T ss_pred ccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce--EEEeecCCcccCcceECCCCCE
Confidence 322 24578899998 888777654 1244555554 32 2222233355789999999987
Q ss_pred EEEEe-CCCeEEEEeCCCCCCCcceEEecccccceeEEEEcc-CCCcEEE
Q 040533 188 LASGG-DDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCP-YQFNVLA 235 (364)
Q Consensus 188 l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~ 235 (364)
|+.+. ..+.|..|++...........+ ...+..-.+++.+ +|. +.+
T Consensus 235 lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~-lwv 282 (355)
T 3sre_A 235 VYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGD-LWV 282 (355)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCC-EEE
T ss_pred EEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCc-EEE
Confidence 77665 5678999998643221222233 2245567788888 474 444
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.86 E-value=0.0038 Score=51.59 Aligned_cols=224 Identities=11% Similarity=0.095 Sum_probs=112.1
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC----CcEEEEecCCcceeee--eecCCCcEEEEEe
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA----SKLQLWDAETSKLIRN--LEGHDKRVATASW 137 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~ 137 (364)
...+.+||..+++...+..++.....-..+.+ ++.+++.|+.+ ..+.+||..+++.... +.........+.+
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 100 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA 100 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE
Confidence 35899999999887665544332222223332 56677777754 5688999887754332 2211112222233
Q ss_pred ecCCCCEEEEeeCC------CcEEEEEcccCcceee-eeecccCcEEEEEEcCCCCEEEEEeC---------CCeEEEEe
Q 040533 138 NHWNGHILTSGSQD------KSIINHDVRVSNNVTS-RINAHTAEVCGLKWSNEGNLLASGGD---------DNLVHVWD 201 (364)
Q Consensus 138 ~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd 201 (364)
++.+++.|+.+ ..+.+||+.+..-... .+......-..+. -++++++.|+. -..+.+||
T Consensus 101 ---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd 175 (306)
T 3ii7_A 101 ---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYD 175 (306)
T ss_dssp ---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEE
T ss_pred ---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeC
Confidence 77788888765 4588899876542111 1111111111222 25666666653 34588899
Q ss_pred CCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---CCeEEEEECCCCeEEEEEecCC--CeEEEEEcCCccc
Q 040533 202 HSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ---DGCIKIWNVQKGTCIHSVDTKA--QICGLEWNRHHKE 276 (364)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~ 276 (364)
+.+..- ..+..+...... .+++.. ++ .+++.|+... -..+.+||+.+.+-...-.... .-.++... +++.
T Consensus 176 ~~~~~W-~~~~~~p~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i 250 (306)
T 3ii7_A 176 PATETW-TELCPMIEARKN-HGLVFV-KD-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIV 250 (306)
T ss_dssp TTTTEE-EEECCCSSCCBS-CEEEEE-TT-EEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEE
T ss_pred CCCCeE-EECCCccchhhc-ceEEEE-CC-EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEE
Confidence 776422 112111111111 122222 33 6777765111 2468999998865433211111 11122222 4555
Q ss_pred eeeeccCCccCCCCeEEEeeCCCC
Q 040533 277 ILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 277 l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
++.|.. .....-..+.+||..+.
T Consensus 251 ~v~GG~-~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 251 YVLAGF-QGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEECB-CSSSBCCEEEEEETTTT
T ss_pred EEEeCc-CCCeeeeeEEEEcCCCC
Confidence 555432 11122457888888664
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.82 E-value=0.0051 Score=50.62 Aligned_cols=223 Identities=12% Similarity=0.077 Sum_probs=110.2
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC-----CcEEEEecCCcc---eee--eeecCCCcEEE
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA-----SKLQLWDAETSK---LIR--NLEGHDKRVAT 134 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~---~~~--~~~~~~~~v~~ 134 (364)
..+.+||..+++...+..++.....-..+. .++.+++.|+.+ ..+.+||..+.+ ... .+.........
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 478999999887765544433222222222 356777777754 368999988765 322 22211122222
Q ss_pred EEeecCCCCEEEEeeCCC-----cEEEEEcccCccee-eeeecccCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeCC
Q 040533 135 ASWNHWNGHILTSGSQDK-----SIINHDVRVSNNVT-SRINAHTAEVCGLKWSNEGNLLASGGDD-----NLVHVWDHS 203 (364)
Q Consensus 135 ~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~ 203 (364)
+.. ++.+++.|+.++ .+.+||+.+..-.. ..+......-..+.+ ++++++.|+.+ ..+.+||+.
T Consensus 109 ~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~ 183 (301)
T 2vpj_A 109 TTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPH 183 (301)
T ss_dssp EEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred EEE---CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCC
Confidence 223 677888887543 57888887654211 111111111122222 56677777654 458889976
Q ss_pred CCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---CCeEEEEECCCCeEEEEEecCC--CeEEEEEcCCcccee
Q 040533 204 KMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ---DGCIKIWNVQKGTCIHSVDTKA--QICGLEWNRHHKEIL 278 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~ 278 (364)
+..- ..+..+.........+.+ + ..+++.|+... ...+.+||+.+.+-...-.... .-.++... +++.++
T Consensus 184 ~~~W-~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v 258 (301)
T 2vpj_A 184 TGHW-TNVTPMATKRSGAGVALL--N-DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL-RGRLYA 258 (301)
T ss_dssp TTEE-EEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEE
T ss_pred CCcE-EeCCCCCcccccceEEEE--C-CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE-CCEEEE
Confidence 5432 112111111111122222 2 36777775111 2568999998876443322111 11122222 455544
Q ss_pred eeccCCccCCCCeEEEeeCCCC
Q 040533 279 SGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 279 ~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
.|.. .....-..+.+||..+.
T Consensus 259 ~GG~-~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 259 IAGY-DGNSLLSSIECYDPIID 279 (301)
T ss_dssp ECCB-CSSSBEEEEEEEETTTT
T ss_pred EcCc-CCCcccccEEEEcCCCC
Confidence 4431 11111156778887654
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.75 E-value=0.0036 Score=51.63 Aligned_cols=231 Identities=12% Similarity=0.118 Sum_probs=109.1
Q ss_pred CCEEEEEecC----CcEEEEecCCcceeee--eecCCCcEEEEEeecCCCCEEEEeeCCC-----cEEEEEcccCccee-
Q 040533 99 AKTLAVGYMA----SKLQLWDAETSKLIRN--LEGHDKRVATASWNHWNGHILTSGSQDK-----SIINHDVRVSNNVT- 166 (364)
Q Consensus 99 ~~~l~~~~~d----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~- 166 (364)
+.+++.|+.+ ..+..||+.+.+.... +......-..+.. ++.+++.|+.++ .+.+||+.+..-..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM---AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE---CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 3455555543 3578888877653322 1111111122222 677888887553 58888887654211
Q ss_pred eeeecccCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC
Q 040533 167 SRINAHTAEVCGLKWSNEGNLLASGGDDN-----LVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ 241 (364)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 241 (364)
..+.........+.+ ++++++.|+.++ .+.+||+.+..- ..+..+....... +++.. ++ .+++.|+...
T Consensus 93 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~-~~~~~-~~-~iyv~GG~~~ 166 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEW-FHVAPMNTRRSSV-GVGVV-GG-LLYAVGGYDV 166 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEE-EEECCCSSCCBSC-EEEEE-TT-EEEEECCEET
T ss_pred CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeE-eecCCCCCcccCc-eEEEE-CC-EEEEEeCCCC
Confidence 111111111122222 566777777553 577888765422 1121111111111 22222 33 6777764111
Q ss_pred -----CCeEEEEECCCCeEEEEEecCC--CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce--eeeccccccc
Q 040533 242 -----DGCIKIWNVQKGTCIHSVDTKA--QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK--WGELQHQTSR 312 (364)
Q Consensus 242 -----d~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~ 312 (364)
-..+.+||+.+.+-...-.... .-.++... +++.++.|.. ......+.+.+||..+.+- +..+......
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~ 244 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGH-DGPLVRKSVEVYDPTTNAWRQVADMNMCRRN 244 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCB-SSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred CCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCC-CCCcccceEEEEeCCCCCEeeCCCCCCcccc
Confidence 2458899998875443321111 11222222 4555555432 1111135789999876432 2222211111
Q ss_pred eeEEeecCCCCEEEEEeCCC-----cEEEEEeeCC
Q 040533 313 ILELSQSPDGLTVVSAAADE-----TLRFWEAFGP 342 (364)
Q Consensus 313 i~~i~~~~~~~~l~~~~~dg-----~i~vw~~~~~ 342 (364)
...+.+ ++++++.|+.++ .+.+||+.+.
T Consensus 245 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 245 AGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CeEEEE--CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 122222 677778887654 4788887654
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.74 E-value=0.0066 Score=49.98 Aligned_cols=223 Identities=12% Similarity=0.132 Sum_probs=108.0
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCC-----cEEEEecCCcceeee--eecCCCcEEEEEe
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMAS-----KLQLWDAETSKLIRN--LEGHDKRVATASW 137 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~--~~~~~~~v~~~~~ 137 (364)
..+..||+.+.+...+..++.....-..+.+ ++.+++.|+.++ .+.+||..+.+.... +.........+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence 4688999988876655443322222222222 667777777543 588999887653322 2211122222333
Q ss_pred ecCCCCEEEEeeCCC-----cEEEEEcccCcceee-eeecccCcEEEEEEcCCCCEEEEEeCC-------CeEEEEeCCC
Q 040533 138 NHWNGHILTSGSQDK-----SIINHDVRVSNNVTS-RINAHTAEVCGLKWSNEGNLLASGGDD-------NLVHVWDHSK 204 (364)
Q Consensus 138 ~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~ 204 (364)
++.+++.|+.++ .+.+||+.+..-... .+.........+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 108 ---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~ 182 (302)
T 2xn4_A 108 ---NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATT 182 (302)
T ss_dssp ---TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred ---CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence 677888887654 467788775542111 11111111122222 56666666542 3588899765
Q ss_pred CCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---CCeEEEEECCCCeEEEEEecCC--CeEEEEEcCCccceee
Q 040533 205 MSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ---DGCIKIWNVQKGTCIHSVDTKA--QICGLEWNRHHKEILS 279 (364)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~ 279 (364)
..- ..+..+.........+.+ + ..+++.|+... ...+.+||+.+.+-...-.... .-.++.. -+++.++.
T Consensus 183 ~~W-~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~ 257 (302)
T 2xn4_A 183 NEW-TYIAEMSTRRSGAGVGVL--N-NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVV 257 (302)
T ss_dssp TEE-EEECCCSSCCBSCEEEEE--T-TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEE
T ss_pred CcE-EECCCCccccccccEEEE--C-CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEE
Confidence 422 111111111111122222 2 36777775111 2468999998875443221111 1112222 24455544
Q ss_pred eccCCccCCCCeEEEeeCCCC
Q 040533 280 GHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 280 ~~~~~~~~~~~~i~i~d~~~~ 300 (364)
|.. .....-..+.+||..+.
T Consensus 258 GG~-~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 258 GGD-DGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CCB-CSSSBCCCEEEEETTTT
T ss_pred CCc-CCCcccccEEEEcCCCC
Confidence 432 11112345788887654
No 317
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.71 E-value=0.0052 Score=50.82 Aligned_cols=223 Identities=14% Similarity=0.091 Sum_probs=109.2
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec----C-----CcEEEEecCCcceeee--eecCCCcEE
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM----A-----SKLQLWDAETSKLIRN--LEGHDKRVA 133 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-----g~i~iw~~~~~~~~~~--~~~~~~~v~ 133 (364)
..+.+||..+++...+..++.....- +++.. ++.+++.|+. + ..+.+||..+.+.... +........
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 47899999988876554433222222 22222 5677777765 2 3588999887653322 221112222
Q ss_pred EEEeecCCCCEEEEeeCC-----CcEEEEEcccCcceee-eeecccCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeC
Q 040533 134 TASWNHWNGHILTSGSQD-----KSIINHDVRVSNNVTS-RINAHTAEVCGLKWSNEGNLLASGGDD-----NLVHVWDH 202 (364)
Q Consensus 134 ~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~ 202 (364)
.+.+ ++.+++.|+.+ ..+.+||+.+..-... .+......-..+.+ ++++++.|+.+ ..+.+||+
T Consensus 117 ~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 191 (308)
T 1zgk_A 117 VGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYP 191 (308)
T ss_dssp EEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEET
T ss_pred EEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeC
Confidence 3333 67788887754 3578888876542111 11111111122222 56677777654 45888997
Q ss_pred CCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---CCeEEEEECCCCeEEEEEecCC--CeEEEEEcCCccce
Q 040533 203 SKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ---DGCIKIWNVQKGTCIHSVDTKA--QICGLEWNRHHKEI 277 (364)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~l 277 (364)
.+..- ..+..+.........+.+ + ..+++.|+... -..+.+||+.+.+-...-.... .-.++... +++.+
T Consensus 192 ~~~~W-~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~ 266 (308)
T 1zgk_A 192 ERNEW-RMITAMNTIRSGAGVCVL--H-NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QGRIY 266 (308)
T ss_dssp TTTEE-EECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEE
T ss_pred CCCeE-eeCCCCCCccccceEEEE--C-CEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-CCEEE
Confidence 65422 111111111111222222 3 36777775111 2568999998875433211111 11122222 44444
Q ss_pred eeeccCCccCCCCeEEEeeCCCC
Q 040533 278 LSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 278 ~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
+.|.. .....-..+.+||+.+.
T Consensus 267 v~GG~-~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 267 VLGGY-DGHTFLDSVECYDPDTD 288 (308)
T ss_dssp EECCB-CSSCBCCEEEEEETTTT
T ss_pred EEcCc-CCCcccceEEEEcCCCC
Confidence 44431 11112356777777654
No 318
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.69 E-value=0.018 Score=48.63 Aligned_cols=227 Identities=12% Similarity=0.048 Sum_probs=117.0
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeee---ecccCcEEEEEEcCC---CCEEEEEeC----C----
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRI---NAHTAEVCGLKWSNE---GNLLASGGD----D---- 194 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~----d---- 194 (364)
-.....++|.| ++++++ +..+|.|++++.. +...+..+ .........|+++|+ +..|+++.. +
T Consensus 28 l~~P~~ia~~p-dG~l~V-~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLG-GGRYLV-TERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEE-TTEEEE-EETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcC-CCeEEE-EeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 34568899999 887554 5566999988732 32112111 112356889999997 445555443 2
Q ss_pred CeEEEEeCCCCC--C--Ccce-EEec-ccccceeEEEEccCCCcEEEeecC-----------CCCCeEEEEECCCC----
Q 040533 195 NLVHVWDHSKMS--S--SKCL-HRFR-DHRAAVKALAWCPYQFNVLASGGG-----------TQDGCIKIWNVQKG---- 253 (364)
Q Consensus 195 ~~i~iwd~~~~~--~--~~~~-~~~~-~~~~~v~~~~~~~~~~~~~~~~~g-----------~~d~~i~i~d~~~~---- 253 (364)
..|..|+..... . .+.+ ..+. ........++|.|+|. ++++.+. +..|.|.-++....
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~ 183 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD 183 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence 567777765321 0 1111 1121 1112346799999995 5555320 01245666665421
Q ss_pred -----eEEEEEecCCCeEEEEEcC-CccceeeeccCCccCCCCeEEEeeCCC----------------Cceeeecccccc
Q 040533 254 -----TCIHSVDTKAQICGLEWNR-HHKEILSGHGFSSSGDGQKLCLWKYPH----------------MTKWGELQHQTS 311 (364)
Q Consensus 254 -----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~i~i~d~~~----------------~~~~~~~~~~~~ 311 (364)
..+... .......++|+| ++.+.++-.. . .....|.+..... ..++..+.....
T Consensus 184 npf~~~~i~a~-G~rnp~Gla~d~~~g~l~v~d~g-~--~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ 259 (354)
T 3a9g_A 184 NPFPNSPIWSY-GHRNPQGIDWHRASGVMVATEHG-P--VGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW 259 (354)
T ss_dssp SSSTTCCEEEE-CCSCCCEEEECTTTCCEEEEECC-S--SSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred CCCCCCcEEEE-ccCCcceEEEeCCCCCEEEEecC-C--CCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence 112221 223457899999 5554444321 0 0011233322100 012223311223
Q ss_pred ceeEEeec-------CCCCEEEEEeCCCcEEEEEeeCCCCC---ccee-ccCCceeeeeeccC
Q 040533 312 RILELSQS-------PDGLTVVSAAADETLRFWEAFGPSGS---GDFV-SHLDGLLSLKVSPI 363 (364)
Q Consensus 312 ~i~~i~~~-------~~~~~l~~~~~dg~i~vw~~~~~~~~---~~~~-~~~~~v~~~~~sp~ 363 (364)
....++|. .+|.++++.-..+.|...++...... ..+. +....+.++++.|.
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pD 322 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDD 322 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTT
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCC
Confidence 46778873 46777777666778888888753211 1221 22346778887764
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.62 E-value=0.0062 Score=50.25 Aligned_cols=230 Identities=11% Similarity=0.084 Sum_probs=112.1
Q ss_pred CEEEEEec--CCcEEEEecCCcceeee--eecCCCcEEEEEeecCCCCEEEEeeCC----CcEEEEEcccCcceee-eee
Q 040533 100 KTLAVGYM--ASKLQLWDAETSKLIRN--LEGHDKRVATASWNHWNGHILTSGSQD----KSIINHDVRVSNNVTS-RIN 170 (364)
Q Consensus 100 ~~l~~~~~--dg~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~-~~~ 170 (364)
.+++.|+. ...+.+||..+++.... +.........+.+ ++.+++.|+.+ ..+.+||+.+..-... .+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 35556654 35689999887654322 2211122222333 77788888765 5688889876542111 111
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---
Q 040533 171 AHTAEVCGLKWSNEGNLLASGGDD------NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ--- 241 (364)
Q Consensus 171 ~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~--- 241 (364)
........+.+ ++++++.|+.+ ..+.+||..+..- ..+..+.........+.+ ++ .+++.|+...
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW-HTKPSMLTQRCSHGMVEA--NG-LIYVCGGSLGNNV 163 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TT-EEEEECCEESCTT
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce-EeCCCCcCCcceeEEEEE--CC-EEEEECCCCCCCC
Confidence 11111122222 56677777754 4588899775432 111111111111112222 33 6777664111
Q ss_pred ----CCeEEEEECCCCeEEEEEecCC--CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc--eeeeccccccce
Q 040533 242 ----DGCIKIWNVQKGTCIHSVDTKA--QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT--KWGELQHQTSRI 313 (364)
Q Consensus 242 ----d~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~i 313 (364)
-..+.+||+.+.+-...-.... .-.++... +++.++.|.. .....-..+.+||+.+.+ .+..+.......
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 241 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQ-NGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTV 241 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCE-ETTEEBCCEEEEETTTTEEEECCCCSCCBSCC
T ss_pred cccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCC-CCCCCCceEEEeeCCCCcEEECCCCCCCccce
Confidence 3558899998875433322111 11222222 4555554431 101113568899987643 222222222222
Q ss_pred eEEeecCCCCEEEEEeCC-----CcEEEEEeeCC
Q 040533 314 LELSQSPDGLTVVSAAAD-----ETLRFWEAFGP 342 (364)
Q Consensus 314 ~~i~~~~~~~~l~~~~~d-----g~i~vw~~~~~ 342 (364)
..+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 242 ~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 242 KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 23333 67788888754 45777887664
No 320
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.58 E-value=0.023 Score=48.47 Aligned_cols=148 Identities=11% Similarity=0.111 Sum_probs=93.2
Q ss_pred EcCCCCEEEEEecCCcEEEEecCCcceeeeeecC----CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce-----
Q 040533 95 WSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH----DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV----- 165 (364)
Q Consensus 95 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----- 165 (364)
...+|..++.+- ++.||.-++......+.+... -..+..+..+| +|++||..+.. .|.|-.+..+...
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFNDN-EIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEECSS-EEEEEECCTTCSCCCCHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEecCC-eEEEEEecCccccCcccc
Confidence 345666676663 577888887754444444432 22578899999 99999988654 7888777632200
Q ss_pred ------eeeeec------ccCcEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCCCCcceEEecc---------cccce
Q 040533 166 ------TSRINA------HTAEVCGLKWSN---EGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRD---------HRAAV 221 (364)
Q Consensus 166 ------~~~~~~------~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~~~v 221 (364)
...+.- ...+|..+.|+| .+..|++-..|+.|++||+..... ++. .+.. ....|
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCE-EESCCCSEEESCSSCCCE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCc-chhccccccCCCcccceE
Confidence 111211 246799999999 456899999999999999986322 222 2221 12457
Q ss_pred eEEEEccCCCcEEEeecCCCCCeEEEE
Q 040533 222 KALAWCPYQFNVLASGGGTQDGCIKIW 248 (364)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~~d~~i~i~ 248 (364)
.+++|.+++-.+.+.. .++.|.|+-.
T Consensus 183 ~S~~Fg~~~lTLYvl~-~t~~GDIYAl 208 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLN-TTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSSCEEEEE-CTTSCEEEEE
T ss_pred EEEEEcCCCcEEEEEe-cCCCCCEEEE
Confidence 7888888664444422 1245666544
No 321
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.55 E-value=0.027 Score=47.08 Aligned_cols=233 Identities=14% Similarity=0.129 Sum_probs=120.0
Q ss_pred CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee--ee----ecCCCcEEEEEeecC---CCCEEEEee--CCCcE
Q 040533 86 EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR--NL----EGHDKRVATASWNHW---NGHILTSGS--QDKSI 154 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~----~~~~~~v~~~~~~~~---~~~~l~~~~--~dg~i 154 (364)
.-.....|+|.|||.++++-...|.|++++..+++... .+ .........|+++|+ ++.+.++-+ .++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 34567899999999977776558999999876554321 11 123556889999983 244444322 34556
Q ss_pred EEEEcccCc----------ceeeeee-cccCcEEEEEEcCCCCEEEEEeC-------------CCeEEEEeCCCCC-C--
Q 040533 155 INHDVRVSN----------NVTSRIN-AHTAEVCGLKWSNEGNLLASGGD-------------DNLVHVWDHSKMS-S-- 207 (364)
Q Consensus 155 ~~~d~~~~~----------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~-~-- 207 (364)
.-|.+.... .+...+. ........|.|.|+|.+.++.+. .|.|.-.+....- .
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 666654311 1111111 11123456999999987777542 2455444543210 0
Q ss_pred ---CcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe------------------EEEEEecC-CCe
Q 040533 208 ---SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT------------------CIHSVDTK-AQI 265 (364)
Q Consensus 208 ---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~------------------~~~~~~~~-~~v 265 (364)
...+.. .++. ....++|+|++ .++++-.| .++.=.|--+..+. ++..+... ...
T Consensus 190 Pf~~~~i~a-~G~R-Np~Gla~dp~G-~L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap 265 (347)
T 3das_A 190 PFPGSPVYS-YGHR-NVQGLAWDDKQ-RLFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP 265 (347)
T ss_dssp SSTTCCEEE-BCCS-BCCEEEECTTC-CEEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred CCCCCeEEe-eCCC-CcceEEECCCC-CEEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence 011111 2333 34679999976 56555321 33322222222221 11222211 234
Q ss_pred EEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce----eeeccccccceeEEeecCCCCEEEEEe
Q 040533 266 CGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK----WGELQHQTSRILELSQSPDGLTVVSAA 329 (364)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~ 329 (364)
..++|.. |..+.... ..+.|....+..... ...+.+....+..++..|||.++++.+
T Consensus 266 ~G~~~~~-g~~~~~~l------~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 266 SGIAYAE-GSVWMAGL------RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEET-TEEEEEES------TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cceEEEc-Cceeeccc------cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 5555553 33333332 144555555544322 222333446788999999997666543
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.51 E-value=0.011 Score=48.79 Aligned_cols=232 Identities=13% Similarity=0.098 Sum_probs=109.7
Q ss_pred CCCEEEEEecC----CcEEEEecCCcceeee--eecCCCcEEEEEeecCCCCEEEEeeC----C-----CcEEEEEcccC
Q 040533 98 DAKTLAVGYMA----SKLQLWDAETSKLIRN--LEGHDKRVATASWNHWNGHILTSGSQ----D-----KSIINHDVRVS 162 (364)
Q Consensus 98 ~~~~l~~~~~d----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~----d-----g~i~~~d~~~~ 162 (364)
++.+++.|+.+ ..+.+||..+.+.... +.........+.. ++.+++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE---CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 55666666632 3588888877654322 1111111122222 6777777776 2 36788888765
Q ss_pred ccee-eeeecccCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEe
Q 040533 163 NNVT-SRINAHTAEVCGLKWSNEGNLLASGGDD-----NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 163 ~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
.-.. ..+.........+.+ ++++++.|+.+ ..+.+||..+..- ..+..+.........+.+ + ..+++.
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~-~~iyv~ 174 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW-HLVAPMLTRRIGVGVAVL--N-RLLYAV 174 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--T-TEEEEE
T ss_pred eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE-eECCCCCccccceEEEEE--C-CEEEEE
Confidence 4211 111111111122222 56677776643 3588888765422 111111111111122222 3 367777
Q ss_pred ecCCC---CCeEEEEECCCCeEEEEEecC--CCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCcee--eecccc
Q 040533 237 GGGTQ---DGCIKIWNVQKGTCIHSVDTK--AQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW--GELQHQ 309 (364)
Q Consensus 237 ~~g~~---d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~ 309 (364)
|+... -..+.+||+.+.+-...-... ..-.++... +++.++.|.. .....-..+.+||+.+.+-. ..+...
T Consensus 175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 252 (308)
T 1zgk_A 175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGY-DGQDQLNSVERYDVETETWTFVAPMKHR 252 (308)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCB-CSSSBCCCEEEEETTTTEEEECCCCSSC
T ss_pred eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCC-CCCCccceEEEEeCCCCcEEECCCCCCC
Confidence 65111 246899999876543321111 111222222 4555555432 11112367899998765322 122211
Q ss_pred ccceeEEeecCCCCEEEEEeCC-----CcEEEEEeeCC
Q 040533 310 TSRILELSQSPDGLTVVSAAAD-----ETLRFWEAFGP 342 (364)
Q Consensus 310 ~~~i~~i~~~~~~~~l~~~~~d-----g~i~vw~~~~~ 342 (364)
......+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 253 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 253 RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 111122222 66777777754 34677776654
No 323
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.50 E-value=0.02 Score=48.39 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=45.4
Q ss_pred CCeEEEEECCC--Cceeeeeeec-CCCCCceEEEEcCCCCEEEEEec-C---------CcEEEEecCCcceeee--ee-c
Q 040533 64 GLELYLWKQEN--GEVQKLLKVT-GEDDFPTSISWSQDAKTLAVGYM-A---------SKLQLWDAETSKLIRN--LE-G 127 (364)
Q Consensus 64 ~~~i~iw~~~~--~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-d---------g~i~iw~~~~~~~~~~--~~-~ 127 (364)
...+.+||..+ .+...+..++ .....-.++.+ ++.+++.|+. + ..+.+||..+.+-... +. .
T Consensus 30 ~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~ 107 (357)
T 2uvk_A 30 GTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPM 107 (357)
T ss_dssp TTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSS
T ss_pred CCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCc
Confidence 45899999874 5555444433 11222222222 5677777765 2 4689999887654332 11 1
Q ss_pred CCCcEEEEEeecCCCCEEEEeeCC
Q 040533 128 HDKRVATASWNHWNGHILTSGSQD 151 (364)
Q Consensus 128 ~~~~v~~~~~~~~~~~~l~~~~~d 151 (364)
......++. . ++.+++.|+.+
T Consensus 108 ~r~~~~~~~--~-~~~iyv~GG~~ 128 (357)
T 2uvk_A 108 GMAGHVTFV--H-NGKAYVTGGVN 128 (357)
T ss_dssp CCSSEEEEE--E-TTEEEEEECCC
T ss_pred ccccceEEE--E-CCEEEEEeCcC
Confidence 111222233 3 78888888764
No 324
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.50 E-value=0.029 Score=45.97 Aligned_cols=204 Identities=16% Similarity=0.181 Sum_probs=124.8
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc-ceeeeeecC----CC
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS-KLIRNLEGH----DK 130 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~----~~ 130 (364)
..++|.-....+.++|+++.+..+...+ ...|.--.|-.+ +.|+..+ +..|+-|+++.. .+.+.+..| ..
T Consensus 78 ~~ViALrag~~LQiFnletK~klks~~~---~e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~ 152 (365)
T 2xzh_A 78 SKVIALKAGKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC 152 (365)
T ss_dssp SSEEEEEETTEEEEEETTTTEEEEEEEC---SSCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTC
T ss_pred ccEEEEecCCeEEEechHHhhhhcceec---CCccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecchhcccc
Confidence 4588887889999999999887666655 456777888754 4566654 468999999753 444455443 34
Q ss_pred cEEEEEeecCCCCEEEEee-------CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCC---CCEEEEEeC---CCeE
Q 040533 131 RVATASWNHWNGHILTSGS-------QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE---GNLLASGGD---DNLV 197 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~---d~~i 197 (364)
.|.....++ +.+.++..+ -.|.+.+|..+.+ ..+.+.+|...-..+.+..+ ..+++.+.. .+.+
T Consensus 153 QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL 229 (365)
T 2xzh_A 153 QIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 229 (365)
T ss_dssp EEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTT--EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEE
T ss_pred eEEEEEECC-CCCEEEEEeEeccCCccceeEEEEeeccc--ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence 677777777 666655443 2367788887643 35667777655443333211 123443332 2589
Q ss_pred EEEeCCCCCCCcc------eEEec---ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEE
Q 040533 198 HVWDHSKMSSSKC------LHRFR---DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICG 267 (364)
Q Consensus 198 ~iwd~~~~~~~~~------~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~ 267 (364)
++-++.....+.+ +..+. ...+...++..++....+++.. .-|.+++||+.++.++..-.-. ..|..
T Consensus 230 hIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviT---K~G~ihlyDleTgt~i~~nrIS~d~iF~ 306 (365)
T 2xzh_A 230 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMNRISGETIFV 306 (365)
T ss_dssp EEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEE---TTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEe---CCcEEEEEEcccCcEEEEeccCCCceEE
Confidence 9999854311111 11111 1234455677776654444433 6899999999999998776543 34443
Q ss_pred EEE
Q 040533 268 LEW 270 (364)
Q Consensus 268 ~~~ 270 (364)
-+.
T Consensus 307 ta~ 309 (365)
T 2xzh_A 307 TAP 309 (365)
T ss_dssp EEE
T ss_pred ecc
Confidence 343
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.43 E-value=0.026 Score=46.74 Aligned_cols=183 Identities=12% Similarity=0.097 Sum_probs=93.4
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec----C-------CcEEEEecCCcceeee--eecCCCc
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM----A-------SKLQLWDAETSKLIRN--LEGHDKR 131 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-------g~i~iw~~~~~~~~~~--~~~~~~~ 131 (364)
..+.+||..+++... ..++.............++..++.|+. + ..+.+||..+++.... +......
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 91 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL 91 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES
T ss_pred CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc
Confidence 789999999988754 333222233334444557788888874 1 1277888887654321 1111111
Q ss_pred EEEEEeecCCCCEEEEeeCC--------CcEEEEEcccCccee-eeeecccCcEEEEEEcCCCCEEEEEeC-C-----Ce
Q 040533 132 VATASWNHWNGHILTSGSQD--------KSIINHDVRVSNNVT-SRINAHTAEVCGLKWSNEGNLLASGGD-D-----NL 196 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~ 196 (364)
...+.+ ++.+++.|+.+ ..+.+||+.+..-.. ..+......-..+. .++++++.|+. + ..
T Consensus 92 ~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~ 166 (315)
T 4asc_A 92 FGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNK 166 (315)
T ss_dssp CEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCC
T ss_pred eeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccce
Confidence 122222 67777777743 358889987654111 11111111111222 35667777765 2 46
Q ss_pred EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---CCeEEEEECCCCeEEE
Q 040533 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ---DGCIKIWNVQKGTCIH 257 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~ 257 (364)
+.+||..+..- ..+..+.........+.+ ++ .+++.|+... -..+.+||+.+.+-..
T Consensus 167 ~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 167 MCVYDPKKFEW-KELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp EEEEETTTTEE-EECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred EEEEeCCCCeE-EECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 88899775422 112111111111122222 33 6777775111 1258899998875443
No 326
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.26 E-value=0.023 Score=43.67 Aligned_cols=105 Identities=11% Similarity=0.011 Sum_probs=65.3
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcce------eeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKL------IRNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVR 160 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 160 (364)
..+.+++|+|+|.+.++ .+|.+.-.+..+... -..+-. --....++.|.| ++.+.++ .||.|.-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence 47889999999986666 678777666544211 111110 011246788988 8888877 56988877764
Q ss_pred cCcce------eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040533 161 VSNNV------TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHV 199 (364)
Q Consensus 161 ~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 199 (364)
+...- ...-..--..+..|.|.|+|.+.++. |+.++-
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 33211 01111112467999999999877666 777543
No 327
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.21 E-value=0.084 Score=45.17 Aligned_cols=206 Identities=15% Similarity=0.178 Sum_probs=127.8
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc-ceeeeeecC----CC
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS-KLIRNLEGH----DK 130 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~----~~ 130 (364)
..++|.-....+.++|+++.+..+...+ ...|.--.|-.+ +.|+..+ +..|+-|+++.. .+.+.+..| ..
T Consensus 77 ~~iiALrag~~lQiFnle~K~klks~~~---~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~ 151 (494)
T 1bpo_A 77 SKVIALKAGKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC 151 (494)
T ss_dssp SSCEEEEETTEEEEEETTTTEEEEEEEC---SSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred CcEEEEecCCeEEEEchHHhhhhcceec---CCCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccc
Confidence 3578887889999999999877666654 345777777644 4566664 568999999743 444555443 35
Q ss_pred cEEEEEeecCCCCEEEEee-------CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCC---CEEEEEeCC---CeE
Q 040533 131 RVATASWNHWNGHILTSGS-------QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEG---NLLASGGDD---NLV 197 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d---~~i 197 (364)
.|.....++ +.+.++..+ -.|.+.+|..+.+. ...+.+|...-..+....+. .+++.+... +.+
T Consensus 152 QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~--sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL 228 (494)
T 1bpo_A 152 QIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (494)
T ss_dssp EEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTCC--EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEE
T ss_pred eEEEEEECC-CCCeEEEEeecccCCcccceEEEeeccccc--cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence 677777788 777665443 23677888876443 56677776655444443211 244444432 789
Q ss_pred EEEeCCCCCCCcc-e----EE-e---cccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecC-CCeEE
Q 040533 198 HVWDHSKMSSSKC-L----HR-F---RDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTK-AQICG 267 (364)
Q Consensus 198 ~iwd~~~~~~~~~-~----~~-~---~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~v~~ 267 (364)
++.++.....+.+ . .. + ....+...++..++....+++.. .-|.+++||+.++.++..-.-. ..|..
T Consensus 229 hi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT---K~G~i~lyDleTgt~i~~nrIs~~~iF~ 305 (494)
T 1bpo_A 229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMNRISGETIFV 305 (494)
T ss_dssp EEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE---TTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe---cCceEEEEecccceeeeeecccCCceEE
Confidence 9999865411111 1 01 1 01234455777777664444433 6899999999999998776543 34444
Q ss_pred EEEcC
Q 040533 268 LEWNR 272 (364)
Q Consensus 268 ~~~~~ 272 (364)
.+.+.
T Consensus 306 t~~~~ 310 (494)
T 1bpo_A 306 TAPHE 310 (494)
T ss_dssp EEEET
T ss_pred ecccC
Confidence 44433
No 328
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.21 E-value=0.069 Score=44.18 Aligned_cols=181 Identities=15% Similarity=0.171 Sum_probs=90.2
Q ss_pred CeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEec----CC-------cEEEEecCCcceeee--eecCCCc
Q 040533 65 LELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYM----AS-------KLQLWDAETSKLIRN--LEGHDKR 131 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg-------~i~iw~~~~~~~~~~--~~~~~~~ 131 (364)
..+..||..+++... .................++..++.|+. ++ .+.+||..+.+.... +......
T Consensus 24 ~~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 468999999988755 233222222233334557788888873 12 177888877654322 2111111
Q ss_pred EEEEEeecCCCCEEEEeeCC-------CcEEEEEcccCcceeeeeecccCcE--EEEEEcCCCCEEEEEeC------CCe
Q 040533 132 VATASWNHWNGHILTSGSQD-------KSIINHDVRVSNNVTSRINAHTAEV--CGLKWSNEGNLLASGGD------DNL 196 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~d-------g~i~~~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~------d~~ 196 (364)
...+.+ ++.+++.|+.+ ..+.+||+.+..- ........+. .+++. .++++++.|+. -..
T Consensus 103 ~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 103 FGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW--SEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE--EEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCC
T ss_pred cceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCCE--eECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccce
Confidence 222223 67778887754 2477888775542 1111111110 11222 35667777763 235
Q ss_pred EEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCC---CCeEEEEECCCCeEE
Q 040533 197 VHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQ---DGCIKIWNVQKGTCI 256 (364)
Q Consensus 197 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~ 256 (364)
+.+||+.+..- ..+..+....... +++.. ++ .+++.||... -..+.+||+.+.+-.
T Consensus 177 ~~~yd~~~~~W-~~~~~~p~~r~~~-~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 177 VFIYNPKKGDW-KDLAPMKTPRSMF-GVAIH-KG-KIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp EEEEETTTTEE-EEECCCSSCCBSC-EEEEE-TT-EEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred EEEEcCCCCEE-EECCCCCCCcccc-eEEEE-CC-EEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 88999876432 1121111111111 22222 23 6777765111 145778998876543
No 329
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.19 E-value=0.072 Score=49.51 Aligned_cols=188 Identities=12% Similarity=0.093 Sum_probs=98.8
Q ss_pred CeEEEEECCCCceeeee-e-----ecCCCCCceEEEEcC-CCCEEEEEecCC------cEEEEecCCcceeee--eecCC
Q 040533 65 LELYLWKQENGEVQKLL-K-----VTGEDDFPTSISWSQ-DAKTLAVGYMAS------KLQLWDAETSKLIRN--LEGHD 129 (364)
Q Consensus 65 ~~i~iw~~~~~~~~~~~-~-----~~~~~~~v~~~~~s~-~~~~l~~~~~dg------~i~iw~~~~~~~~~~--~~~~~ 129 (364)
..+.+||..+++...+. . .+..... .+++..+ ++.+++.|+.++ .+.+||..+.+.... +....
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R 490 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR 490 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc
Confidence 46899999988776554 2 1111112 2333333 677888887543 588999887543322 22111
Q ss_pred CcEEEEEeecCCCCEEEEeeCCC--cEEEEEcccCcceeee----eecccCcEEEEEEcCC-CCEEEEEeC--C-----C
Q 040533 130 KRVATASWNHWNGHILTSGSQDK--SIINHDVRVSNNVTSR----INAHTAEVCGLKWSNE-GNLLASGGD--D-----N 195 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~----~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----~ 195 (364)
..- +++... ++.+++.|+.++ .+.+||+.+..-.... .........++.+..+ +++++.|+. + .
T Consensus 491 ~~h-~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~ 568 (695)
T 2zwa_A 491 FRH-SACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSD 568 (695)
T ss_dssp BSC-EEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCC
T ss_pred ccc-eEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeC
Confidence 112 222223 788888888655 6889998765421111 1111112233455554 667777765 2 4
Q ss_pred eEEEEeCCCCCC-----CcceEEecccccceeEEEEccCCCcEEEeecCC------CCCeEEEEECCCCeEE
Q 040533 196 LVHVWDHSKMSS-----SKCLHRFRDHRAAVKALAWCPYQFNVLASGGGT------QDGCIKIWNVQKGTCI 256 (364)
Q Consensus 196 ~i~iwd~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~------~d~~i~i~d~~~~~~~ 256 (364)
.+.+||+.+... ...+.........-.+++...++ .+++.||.+ ....+.+||+.+.+-.
T Consensus 569 ~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 569 KAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR-KLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT-EEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred cEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC-EEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 588999876542 11122111011111122333323 677777521 2356999999887654
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.08 E-value=0.061 Score=44.54 Aligned_cols=228 Identities=13% Similarity=0.105 Sum_probs=104.1
Q ss_pred EEEEEecCCcEEEEecCCcceeee-eec-CCCcEEEEEeecCCCCEEEEeeC----CC-------cEEEEEcccCcceee
Q 040533 101 TLAVGYMASKLQLWDAETSKLIRN-LEG-HDKRVATASWNHWNGHILTSGSQ----DK-------SIINHDVRVSNNVTS 167 (364)
Q Consensus 101 ~l~~~~~dg~i~iw~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~l~~~~~----dg-------~i~~~d~~~~~~~~~ 167 (364)
.++.|+. .+..||..+++.... +.. ....-.+++ .. ++.+++.|+. ++ .+..||..+..-...
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 4444542 488999887765431 111 111122222 33 7788888873 12 167788765542111
Q ss_pred -eeecccCcEEEEEEcCCCCEEEEEeCC-------CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecC
Q 040533 168 -RINAHTAEVCGLKWSNEGNLLASGGDD-------NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGG 239 (364)
Q Consensus 168 -~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 239 (364)
.+...........+ ++++++.|+.+ ..+.+||..+..- ..+..+...... .+++. .++ .+++.|+.
T Consensus 94 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~-~~~~~-~~~-~iyv~GG~ 167 (318)
T 2woz_A 94 PPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW-SEVKNLPIKVYG-HNVIS-HNG-MIYCLGGK 167 (318)
T ss_dssp SCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE-EEECCCSSCEES-CEEEE-ETT-EEEEECCE
T ss_pred CCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCE-eECCCCCCcccc-cEEEE-ECC-EEEEEcCC
Confidence 11111111112222 56677777753 3477888765422 111111111111 12222 233 67777641
Q ss_pred C----CCCeEEEEECCCCeEEEEEecCC--CeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce--eeecccccc
Q 040533 240 T----QDGCIKIWNVQKGTCIHSVDTKA--QICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK--WGELQHQTS 311 (364)
Q Consensus 240 ~----~d~~i~i~d~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~--~~~~~~~~~ 311 (364)
. .-..+.+||+.+.+-...-.... .-.+++.. +++.++.|.. ........+.+||+.+.+- +..+.....
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 245 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGV-TEDGLSASVEAFDLKTNKWEVMTEFPQERS 245 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEE-ETTEEEEEEEEEETTTCCEEECCCCSSCCB
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCc-CCCCccceEEEEECCCCeEEECCCCCCccc
Confidence 1 12458999998875443322111 11222222 4455555432 1001124678899876532 222221111
Q ss_pred ceeEEeecCCCCEEEEEeCC--------------CcEEEEEeeCC
Q 040533 312 RILELSQSPDGLTVVSAAAD--------------ETLRFWEAFGP 342 (364)
Q Consensus 312 ~i~~i~~~~~~~~l~~~~~d--------------g~i~vw~~~~~ 342 (364)
....+. -++++++.|+.+ ..+.+||+.+.
T Consensus 246 ~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 246 SISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp SCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred ceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 112222 256777777654 34677776654
No 331
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.07 E-value=0.27 Score=48.40 Aligned_cols=268 Identities=11% Similarity=0.099 Sum_probs=135.1
Q ss_pred EEEEEeCCeEEEEEC--CCCceeeeeee-cCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcE-E
Q 040533 58 ILAIALGLELYLWKQ--ENGEVQKLLKV-TGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRV-A 133 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~--~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v-~ 133 (364)
++++-.||.+.-+.+ .+++.....+. -| ..++.=..+...+..-+.+..+....+|.-+ ++.... .-.-..+ .
T Consensus 620 L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~~ 696 (1158)
T 3ei3_A 620 LLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVNY 696 (1158)
T ss_dssp EEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCCE
T ss_pred EEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhce
Confidence 455556787655544 45554333211 13 3344444444444433333345555555433 332211 1111223 3
Q ss_pred EEEeecCC-CCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCC------------------
Q 040533 134 TASWNHWN-GHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDD------------------ 194 (364)
Q Consensus 134 ~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------------ 194 (364)
...|+... .+-++..+ ++.+++..+...+......-.-...+..++++|+.+.++.+..+
T Consensus 697 ~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 775 (1158)
T 3ei3_A 697 MCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSAS 775 (1158)
T ss_dssp EEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHH
T ss_pred EeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhh
Confidence 33454311 23344333 45688888754433222222334567888888877655544311
Q ss_pred -------------------------------CeEEEEeCCCCCCCcceEEecc-cccceeEEE---EccCCCcEEEeecC
Q 040533 195 -------------------------------NLVHVWDHSKMSSSKCLHRFRD-HRAAVKALA---WCPYQFNVLASGGG 239 (364)
Q Consensus 195 -------------------------------~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~---~~~~~~~~~~~~~g 239 (364)
+.|++.|-.+. +.+..+.- ....+.+++ |..+...+++.|.+
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa 852 (1158)
T 3ei3_A 776 TQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 852 (1158)
T ss_dssp HHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEE
T ss_pred hhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEee
Confidence 12445553322 22222221 123344444 44333456665531
Q ss_pred --------CCCCeEEEEECCCCeE--EEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeecccc
Q 040533 240 --------TQDGCIKIWNVQKGTC--IHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQ 309 (364)
Q Consensus 240 --------~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 309 (364)
...|.|.+|++.+++. +...+..+++++++-- +|+.+ ++. +..|++|++...+.+..-..+
T Consensus 853 ~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Ll-a~i-------g~~l~vy~l~~~~~L~~~~~~ 923 (1158)
T 3ei3_A 853 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLL-ASI-------NSTVRLYEWTTEKELRTECNH 923 (1158)
T ss_dssp ECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEE-EEE-------TTEEEEEEECTTSCEEEEEEE
T ss_pred ecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEE-EEc-------CCEEEEEECCCCceEEEEeec
Confidence 1358899999875543 3344556888888754 34444 443 789999999876544411111
Q ss_pred ccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 310 TSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 310 ~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
-..|..+.....+.+++.|..-..|.+...+.
T Consensus 924 ~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 924 YNNIMALYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp CCCSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred cccEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence 11233333333577999998888888877664
No 332
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.00 E-value=0.16 Score=44.51 Aligned_cols=104 Identities=9% Similarity=0.140 Sum_probs=61.4
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceee--eeec------CCCcEEEEEeecCC---CCEEEEeeC------
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIR--NLEG------HDKRVATASWNHWN---GHILTSGSQ------ 150 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~------~~~~v~~~~~~~~~---~~~l~~~~~------ 150 (364)
.....|+|.|+|+++++-...+.|++++..+++... .+.. .......|+|+| + +..|..+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P-df~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP-DFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT-TTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC-CcCcCCEEEEEEeccccCC
Confidence 356799999999977765444578888865554322 2211 245677999998 4 444444332
Q ss_pred -------CCcEEEEEcccCc-------ceeeeee-cccCcEEEEEEcCCCCEEEEEe
Q 040533 151 -------DKSIINHDVRVSN-------NVTSRIN-AHTAEVCGLKWSNEGNLLASGG 192 (364)
Q Consensus 151 -------dg~i~~~d~~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 192 (364)
...|..+++.... .+...+. ........|+|.|+|.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2345556554321 1111111 1123468999999998777655
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.93 E-value=0.075 Score=43.91 Aligned_cols=133 Identities=9% Similarity=0.006 Sum_probs=71.4
Q ss_pred eEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC--------CcEEEEecCCcceee--eeecCCCcEEEE
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA--------SKLQLWDAETSKLIR--NLEGHDKRVATA 135 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iw~~~~~~~~~--~~~~~~~~v~~~ 135 (364)
.+.+||..+++...+..++.....-..+.+ ++..++.|+.+ ..+.+||..+.+-.. .+.........+
T Consensus 68 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 145 (315)
T 4asc_A 68 YFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL 145 (315)
T ss_dssp EEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred ceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE
Confidence 388999998877555443322222222222 56677777642 358999988765332 222111222222
Q ss_pred EeecCCCCEEEEeeC-C-----CcEEEEEcccCccee-eeeecccCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCC
Q 040533 136 SWNHWNGHILTSGSQ-D-----KSIINHDVRVSNNVT-SRINAHTAEVCGLKWSNEGNLLASGGDDN-----LVHVWDHS 203 (364)
Q Consensus 136 ~~~~~~~~~l~~~~~-d-----g~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~ 203 (364)
.. ++.+++.|+. + ..+.+||+.+..-.. ..+........++.+ ++++++.|+.++ .+.+||+.
T Consensus 146 ~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 220 (315)
T 4asc_A 146 SH---MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSIT 220 (315)
T ss_dssp EE---TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETT
T ss_pred EE---CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECC
Confidence 32 7778888876 2 368889987654211 111111111122222 567777777554 57888976
Q ss_pred CC
Q 040533 204 KM 205 (364)
Q Consensus 204 ~~ 205 (364)
+.
T Consensus 221 ~~ 222 (315)
T 4asc_A 221 DN 222 (315)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.032 Score=46.45 Aligned_cols=112 Identities=11% Similarity=0.026 Sum_probs=66.5
Q ss_pred CEEEEEecCCcEEEEecCCcceeeeeecC-CCcEEEEEee--cCCCCEEEEe-eCCCcEEEEEcccCcceeeeeec----
Q 040533 100 KTLAVGYMASKLQLWDAETSKLIRNLEGH-DKRVATASWN--HWNGHILTSG-SQDKSIINHDVRVSNNVTSRINA---- 171 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~---- 171 (364)
..+++++.||.|.-+|.++|+....++.. ..++....-. +.++..++.. +.||.|..++..++.... .+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~-~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL-PLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE-EEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe-eeccccce
Confidence 47888999999999999999998888754 1222221110 1122344443 589999999987664321 1111
Q ss_pred ccCcEEE---EEE-----cCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEec
Q 040533 172 HTAEVCG---LKW-----SNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFR 215 (364)
Q Consensus 172 ~~~~v~~---~~~-----~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 215 (364)
...++.. ... ...+..+++|+.+|.+...|+++++. +..+.
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~---~W~~~ 138 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI---ISAFG 138 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE---EEEES
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE---EEEEe
Confidence 1122221 000 01345788999999999999887643 55543
No 335
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.74 E-value=0.18 Score=41.34 Aligned_cols=212 Identities=8% Similarity=-0.002 Sum_probs=113.1
Q ss_pred cCCCCEEEEEe--cCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCC--------------CcEEEEEc
Q 040533 96 SQDAKTLAVGY--MASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQD--------------KSIINHDV 159 (364)
Q Consensus 96 s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------------g~i~~~d~ 159 (364)
++++.++.... .++.|...+.+.. ....+... . +--+++ +++.|+-+... ..|+..++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~-~~~~l~~~--~--~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGS-NIHKLSND--T--AMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSC-SCEEEEEE--E--EEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCC-CCEEccCC--c--eeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 34566666554 2455666655433 33333321 1 234466 66666655432 35666666
Q ss_pred ccCcceeeeeecccCcEEEEEEcCCCCEEEEEe--CC--CeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEE
Q 040533 160 RVSNNVTSRINAHTAEVCGLKWSNEGNLLASGG--DD--NLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
...+ ...+.. .. +..|+++++.|+-.. .+ ..|+..++.... ...+..+.. ..++++++.++.
T Consensus 96 dg~~--~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~----~~~lt~~~~----~~~~~~g~~iy~ 161 (302)
T 3s25_A 96 NGHG--STVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE----KKKIKNHYL----FTCNTSDRYFYY 161 (302)
T ss_dssp TSCC--CEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC----CEEEESSCC----CCSEEETTEEEE
T ss_pred CCCc--ceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC----eEEEeCCCc----eEeeEECCEEEE
Confidence 6444 222222 22 236777888888776 33 455555554321 233333322 456778888887
Q ss_pred eecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeE
Q 040533 236 SGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILE 315 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 315 (364)
+.. ....|...++..+.....+. .... ..+.|++.+|+-... .....|..-++..... ..+.. ..+
T Consensus 162 t~~--g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~----~~~~~I~~~~ldG~~~-~~Lt~--~~~-- 227 (302)
T 3s25_A 162 NNP--KNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDV----NRDNAIVHVNINNPNP-VVLTE--ANI-- 227 (302)
T ss_dssp ECT--TTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEG----GGTTEEEEECSSSCCC-EECSC--SCE--
T ss_pred EeC--CCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEc----CCCcEEEEEECCCCCe-EEEeC--CCc--
Confidence 753 46789999987766544433 2222 335688888876542 1134677777765443 23321 222
Q ss_pred EeecCCCCEEEEEeC--CCcEEEEEeeC
Q 040533 316 LSQSPDGLTVVSAAA--DETLRFWEAFG 341 (364)
Q Consensus 316 i~~~~~~~~l~~~~~--dg~i~vw~~~~ 341 (364)
..|+|++.+|+-++. .+.|..-++..
T Consensus 228 ~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 228 EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 337778887776532 34455555444
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.72 E-value=0.13 Score=39.55 Aligned_cols=182 Identities=13% Similarity=0.031 Sum_probs=98.3
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcc--e--eeeeecc--cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCc---ce
Q 040533 141 NGHILTSGSQDKSIINHDVRVSNN--V--TSRINAH--TAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSK---CL 211 (364)
Q Consensus 141 ~~~~l~~~~~dg~i~~~d~~~~~~--~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~ 211 (364)
.+.+|+...+| +++.=....... . .....+. -..+..++|+|+|.+.++ .+|.++-.+..+..... .-
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 45567777777 555443332221 0 0011122 236779999999986666 67777666643321110 00
Q ss_pred EEec--ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeE------EEEE-ec-CCCeEEEEEcCCccceeeec
Q 040533 212 HRFR--DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTC------IHSV-DT-KAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 212 ~~~~--~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~------~~~~-~~-~~~v~~~~~~~~~~~l~~~~ 281 (364)
..+- +-.. ..++.|.|++ .+.++ + ||.|.-++-.+... -..+ .. -..+..+.+.|+|.+.++.
T Consensus 80 t~IG~~Gw~~-F~a~~fD~~G-~LYav-~---dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 80 KKIGNGGWNQ-FQFLFFDPNG-YLYAV-S---KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp EEEECSCGGG-CSEEEECTTS-CEEEE-E---TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred cEeccccccc-ceEEEECCCC-CEEEe-C---CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 1110 1111 4789999998 55555 3 79998887633111 0111 11 1468999999999988876
Q ss_pred cCCccCCCCeEEEeeCCCCceee------ecc-ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCC
Q 040533 282 GFSSSGDGQKLCLWKYPHMTKWG------ELQ-HQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPS 343 (364)
Q Consensus 282 ~~~~~~~~~~i~i~d~~~~~~~~------~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~ 343 (364)
++.++-....+..... .+- ..-..-+.+.|.++|.+.++. +| ++|....++
T Consensus 153 -------dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~p~ 210 (236)
T 1tl2_A 153 -------GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYPPS 210 (236)
T ss_dssp -------TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESCCC
T ss_pred -------CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCCcc
Confidence 6665544433222111 111 122234557799999776665 66 566655443
No 337
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.65 E-value=0.16 Score=50.25 Aligned_cols=194 Identities=16% Similarity=0.187 Sum_probs=114.4
Q ss_pred ccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCc-ceeeeeecC----CC
Q 040533 56 NNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETS-KLIRNLEGH----DK 130 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~----~~ 130 (364)
..++|.-.+..+.|+|+++.+..+...+ ...|.--.|-.+. .|+..+ +..|.-|++... .+.+.+..| ..
T Consensus 77 ~~iiALrag~~lQiFnl~~k~klks~~~---~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~ 151 (1630)
T 1xi4_A 77 SKVIALKAGKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC 151 (1630)
T ss_pred cceEEEecCCeEEEeehHHhhhhccccc---CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccC
Confidence 3588888889999999988776555544 4467777786443 455554 467999999643 333334333 45
Q ss_pred cEEEEEeecCCCCEEEEee-------CCCcEEEEEcccCcceeeeeecccCcEEEEEEcC---CCCEEEEEeC---CCeE
Q 040533 131 RVATASWNHWNGHILTSGS-------QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSN---EGNLLASGGD---DNLV 197 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~---d~~i 197 (364)
.|..-.-++ +.++++..+ -.|.+.+|..+.+. ...+.+|......+.... ....++.+.. .+.+
T Consensus 152 QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~~--sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kL 228 (1630)
T 1xi4_A 152 QIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (1630)
T ss_pred eeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeeccccc--chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceE
Confidence 666677777 666665433 34778899876443 445566655443333321 1123333322 2689
Q ss_pred EEEeCCCCCCCcceE------Eec---ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe
Q 040533 198 HVWDHSKMSSSKCLH------RFR---DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD 260 (364)
Q Consensus 198 ~iwd~~~~~~~~~~~------~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 260 (364)
+|-++.....+.+.. .+. ...+...++..++....+++.. .-|.+.+||+.++.++..-.
T Consensus 229 hi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it---k~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe---cCceEEEEecccchhhhhcc
Confidence 999886531111111 011 1133344666666554444432 68999999999998875543
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.58 E-value=0.26 Score=41.16 Aligned_cols=232 Identities=12% Similarity=0.102 Sum_probs=119.2
Q ss_pred eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce-eee----eecccCcEEEEEEcCC---CCEEEEE---e
Q 040533 124 NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV-TSR----INAHTAEVCGLKWSNE---GNLLASG---G 192 (364)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~----~~~~~~~v~~~~~~~~---~~~l~~~---~ 192 (364)
.+...-...+.|+|.| ++.++++--..|.|++++...+... +.. ..........|+++|+ +..|+.. .
T Consensus 26 ~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 3333445678999999 8887776655899999886544321 111 1123456889999995 3444443 2
Q ss_pred CCCeEEEEeCCCCC-------CCcceE-Eec-ccccceeEEEEccCCCcEEEeecC----------CCCCeEEEEECCCC
Q 040533 193 DDNLVHVWDHSKMS-------SSKCLH-RFR-DHRAAVKALAWCPYQFNVLASGGG----------TQDGCIKIWNVQKG 253 (364)
Q Consensus 193 ~d~~i~iwd~~~~~-------~~~~~~-~~~-~~~~~v~~~~~~~~~~~~~~~~~g----------~~d~~i~i~d~~~~ 253 (364)
.++.|.-|.+.... ..+.+. .+. .....-..|.|.|++..++.+|.+ +..|.|.-.+....
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 34566666654311 111111 121 112234679999999544443321 01345555554321
Q ss_pred ---------eEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCC--eEEEeeC--------CCC--------ceeeec
Q 040533 254 ---------TCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQ--KLCLWKY--------PHM--------TKWGEL 306 (364)
Q Consensus 254 ---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~--~i~i~d~--------~~~--------~~~~~~ 306 (364)
..+... .......++|+|+|.+.++-.+ .++ .|.+... ..+ .++..+
T Consensus 185 ip~~nPf~~~~i~a~-G~RNp~Gla~dp~G~L~~~d~g-----~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~ 258 (347)
T 3das_A 185 PAPGNPFPGSPVYSY-GHRNVQGLAWDDKQRLFASEFG-----QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQW 258 (347)
T ss_dssp BCTTCSSTTCCEEEB-CCSBCCEEEECTTCCEEEEECC-----SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEE
T ss_pred ccCCCCCCCCeEEee-CCCCcceEEECCCCCEEEEecC-----CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEec
Confidence 111111 2234678999998776655332 122 2222210 001 112222
Q ss_pred cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCCCCC----cceeccCCceeeeeeccC
Q 040533 307 QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGPSGS----GDFVSHLDGLLSLKVSPI 363 (364)
Q Consensus 307 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~~~~----~~~~~~~~~v~~~~~sp~ 363 (364)
..+......++|. +|..++..-..+.|....+...... ..+.+....+.+|+..|.
T Consensus 259 ~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pD 318 (347)
T 3das_A 259 STDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGG 318 (347)
T ss_dssp CTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEET
T ss_pred CCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCC
Confidence 2222345667775 4556665556667777777654321 122233456788877663
No 339
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.54 E-value=0.53 Score=44.22 Aligned_cols=257 Identities=11% Similarity=0.076 Sum_probs=143.3
Q ss_pred cEEEEEeCCeEEEEECCCCceeeeeeecC----CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcE
Q 040533 57 NILAIALGLELYLWKQENGEVQKLLKVTG----EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRV 132 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v 132 (364)
.+..+. .+.|..++..+++..... ... ....|.++...+++..|..|+. +-+..++..+++...........|
T Consensus 158 ~lWigt-~~Gl~~~~~~~~~~~~~~-~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i 234 (758)
T 3ott_A 158 QIYVGT-YNGLCRYIPSNGKFEGIP-LPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSI 234 (758)
T ss_dssp CEEEEE-TTEEEEEETTTTEEEEEC-CCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEE
T ss_pred CEEEEe-CCCHhhCccCCCceEEec-CCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeE
Confidence 344444 456888888776543221 111 1234788888777776666664 458888887665432211123457
Q ss_pred EEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeee--------cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 040533 133 ATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRIN--------AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 204 (364)
.++.... ++.+.+ |+.+ -+.+++..+... ..+. -....|.++....+|. |-.|+..| +.++....
T Consensus 235 ~~i~~d~-~g~lWi-gT~~-Gl~~~~~~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~ 307 (758)
T 3ott_A 235 KSLALDG-NGDLLA-GTDN-GLYVYHNDTTPL--QHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS 307 (758)
T ss_dssp EEEEECT-TCCEEE-EETT-EEEEECCTTSCC--EEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC
T ss_pred EEEEEcC-CCCEEE-EeCC-ceeEEecCCCcE--EEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC
Confidence 7777765 555544 4544 477888765431 1111 1234588888877775 44555566 55443211
Q ss_pred CCCCcceEEec-----ccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCe--EEEEEec--------CCCeEEEE
Q 040533 205 MSSSKCLHRFR-----DHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGT--CIHSVDT--------KAQICGLE 269 (364)
Q Consensus 205 ~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~--------~~~v~~~~ 269 (364)
..+ ..... .....|.++.-..++...+.+ .+| +..++..+++ ....+.. ...|.++.
T Consensus 308 --~~~-~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt----~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~ 379 (758)
T 3ott_A 308 --ALQ-FIPISQITGTGDGNQFYSLFRDSKGFYWFGG----ANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIY 379 (758)
T ss_dssp ---CE-EEEHHHHSCSCCCCBEEEEEECTTCCEEEEE----TTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEE
T ss_pred --cee-EEecccCCCCCCCceEEEEEEcCCCCEEEee----CCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEE
Confidence 111 11110 112457888877777444433 344 6666655432 1222221 23488888
Q ss_pred EcCCccceeeeccCCccCCCCeEEEeeCCCCceeeec--cc----cccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 270 WNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGEL--QH----QTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~--~~----~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
-..+|..-+.. ++.+..||..+++...-. .. ....|.++...++|.+ -.|+..+-|.++|..
T Consensus 380 ~d~~g~lWigt--------~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-WigT~~~Gl~~~~~~ 447 (758)
T 3ott_A 380 EDKEQQLWIAT--------DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQL-WISTCLGGIFVVDKH 447 (758)
T ss_dssp ECTTSCEEEEE--------TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEE-EEEESSSCEEEEEHH
T ss_pred ECCCCCEEEEe--------CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCE-EEEECCCceEEEccc
Confidence 88888766644 557899998776543211 11 2245788888777764 446666667788754
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.53 E-value=0.51 Score=43.85 Aligned_cols=201 Identities=14% Similarity=0.112 Sum_probs=100.8
Q ss_pred CCCCEEEEEecC----CcEEEEecCCcceeeee-e-------cCCCcEEEEEeecCCCCEEEEeeCCC------cEEEEE
Q 040533 97 QDAKTLAVGYMA----SKLQLWDAETSKLIRNL-E-------GHDKRVATASWNHWNGHILTSGSQDK------SIINHD 158 (364)
Q Consensus 97 ~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~-~-------~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~~~d 158 (364)
.++..++.|+.+ ..+.+||..+++....- . .....-..+.+.. ++.+++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 456777777743 35888998876543322 1 1111222333322 566777776543 477888
Q ss_pred cccCcceeeeeec--ccCcEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCCCCcceEE---ecccccceeEEEEccCCC
Q 040533 159 VRVSNNVTSRINA--HTAEVCGLKWSNEGNLLASGGDDN--LVHVWDHSKMSSSKCLHR---FRDHRAAVKALAWCPYQF 231 (364)
Q Consensus 159 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~ 231 (364)
+.+..- ..... ....-.+++...++++++.|+.++ .+.+||..+..- ..+.. ..........+.+.....
T Consensus 475 ~~t~~W--~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W-~~~~~~g~~p~~r~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 475 MKTREW--SMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF-KDVTPKDEFFQNSLVSAGLEFDPVSK 551 (695)
T ss_dssp TTTTEE--EECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE-EECCCSSGGGGSCCBSCEEEEETTTT
T ss_pred CCCCcE--EECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce-EEccCCCCCCCcccceeEEEEeCCCC
Confidence 876542 11111 111112233323778888887654 689999876432 11111 111111223355555534
Q ss_pred cEEEeecCCCC-----CeEEEEECCCCeE-----EEEE-ec--CC-CeEEEEEcCCccceeeeccCCcc--CCCCeEEEe
Q 040533 232 NVLASGGGTQD-----GCIKIWNVQKGTC-----IHSV-DT--KA-QICGLEWNRHHKEILSGHGFSSS--GDGQKLCLW 295 (364)
Q Consensus 232 ~~~~~~~g~~d-----~~i~i~d~~~~~~-----~~~~-~~--~~-~v~~~~~~~~~~~l~~~~~~~~~--~~~~~i~i~ 295 (364)
.+++.||...+ +.+.+||+.+..- -..+ .. .. .-.++....+++.++.|...... .....+.+|
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 67787752122 4689999988761 1222 11 11 11223333335555555321100 125679999
Q ss_pred eCCCCc
Q 040533 296 KYPHMT 301 (364)
Q Consensus 296 d~~~~~ 301 (364)
|+.+.+
T Consensus 632 d~~t~~ 637 (695)
T 2zwa_A 632 DPLSET 637 (695)
T ss_dssp ETTTTE
T ss_pred ECCCCe
Confidence 988754
No 341
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.42 E-value=0.46 Score=42.11 Aligned_cols=234 Identities=8% Similarity=0.030 Sum_probs=131.1
Q ss_pred EEEEEecCCcEEEEecCCcceeeeeecC-------------------------CCcEEEEEeecC----CCCEEEEee-C
Q 040533 101 TLAVGYMASKLQLWDAETSKLIRNLEGH-------------------------DKRVATASWNHW----NGHILTSGS-Q 150 (364)
Q Consensus 101 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------------------------~~~v~~~~~~~~----~~~~l~~~~-~ 150 (364)
.+.+|+..|.|+|+-+.+++.+..+.-. .+......+|-+ +|++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 3678889999999999998887765310 111111122211 456677666 3
Q ss_pred CCcEEEEEcccCcceeeeeecccCcEEEEEEc--CCCCEEEEEeCC-------CeEEEEeCCCCCCCcceEEeccc----
Q 040533 151 DKSIINHDVRVSNNVTSRINAHTAEVCGLKWS--NEGNLLASGGDD-------NLVHVWDHSKMSSSKCLHRFRDH---- 217 (364)
Q Consensus 151 dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~---- 217 (364)
+..|-..+++.-+.-...-......+..+.|- |+..+++.+++. |.. ..+...+.......+.+.
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~~y~~f~~iD~~tm~v 229 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDENSYTMYNAIDAETMEM 229 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTTEEEEEEEEETTTCSE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChhhceEEEEEcCCccEE
Confidence 45677777766553222223455678888886 677788887753 221 100111110000001110
Q ss_pred ------ccceeEEEEccCCCcEEEeecCC------------CCC-------------------------eEEEEECCC--
Q 040533 218 ------RAAVKALAWCPYQFNVLASGGGT------------QDG-------------------------CIKIWNVQK-- 252 (364)
Q Consensus 218 ------~~~v~~~~~~~~~~~~~~~~~g~------------~d~-------------------------~i~i~d~~~-- 252 (364)
.+....+...+++.+.+.++-.+ ... .+.+.|.+.
T Consensus 230 ~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~ 309 (638)
T 3sbq_A 230 AFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD 309 (638)
T ss_dssp EEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred EEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence 11222334456666666555311 111 244555544
Q ss_pred --C-eEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCce-------------eeeccccccceeEE
Q 040533 253 --G-TCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTK-------------WGELQHQTSRILEL 316 (364)
Q Consensus 253 --~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~-------------~~~~~~~~~~i~~i 316 (364)
+ ...+.+........+..+|+|++++++.. -+.++.++|+..... ..+.+. .-.....
T Consensus 310 ~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GK-----LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt 383 (638)
T 3sbq_A 310 GKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGK-----LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHT 383 (638)
T ss_dssp TBCCSSEEEEEESSSCCCEEECTTSCEEEEECT-----TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEE
T ss_pred ccCCceEEEEeCCCCCcceeeCCCCCEEEEcCC-----CCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEE
Confidence 1 23344445556678999999999998754 378999999874211 122222 2345788
Q ss_pred eecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 317 SQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 317 ~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
+|.++|.-..+---|..|.-|++...
T Consensus 384 ~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 384 TFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred EECCCCceEeeeeecceEEEEeccHH
Confidence 99999954555568999999998753
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.39 E-value=0.36 Score=40.56 Aligned_cols=54 Identities=9% Similarity=-0.016 Sum_probs=28.2
Q ss_pred eEEEeeCCCC--ceeeeccccccceeEEeecCCCCEEEEEeCCC------cEEEEEeeCCCCCc
Q 040533 291 KLCLWKYPHM--TKWGELQHQTSRILELSQSPDGLTVVSAAADE------TLRFWEAFGPSGSG 346 (364)
Q Consensus 291 ~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg------~i~vw~~~~~~~~~ 346 (364)
.+.+||+.+. +.+..+......-.++. .++++++.|+.++ .|.++++++++...
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 5778888754 33333332222222222 3777888888653 35566777766544
No 343
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.39 E-value=0.44 Score=41.62 Aligned_cols=108 Identities=10% Similarity=0.142 Sum_probs=59.8
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce-eeeeec------ccCcEEEEEEcCC---CCEEEEEeC-----
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV-TSRINA------HTAEVCGLKWSNE---GNLLASGGD----- 193 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~----- 193 (364)
-.....|+|.| +++++++-...+.|++++...+... +..+.. .......|+|+|+ +..|+.+..
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34567999999 8887776544457888876433321 111111 2456789999995 455554432
Q ss_pred --------CCeEEEEeCCCCC----CCcceE-Eecc-cccceeEEEEccCCCcEEEee
Q 040533 194 --------DNLVHVWDHSKMS----SSKCLH-RFRD-HRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 194 --------d~~i~iwd~~~~~----~~~~~~-~~~~-~~~~v~~~~~~~~~~~~~~~~ 237 (364)
...|.-+++.... ..+.+. .+.. .......|+|.|+|..+++++
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2345556543211 111121 1211 123468899999996444444
No 344
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.32 E-value=0.53 Score=41.77 Aligned_cols=213 Identities=13% Similarity=0.115 Sum_probs=121.6
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEc--CCCCEEEEEec-------CCcE---------EE---EecCCccee
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWS--QDAKTLAVGYM-------ASKL---------QL---WDAETSKLI 122 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~-------dg~i---------~i---w~~~~~~~~ 122 (364)
+..|-..++...++.++.+++ ....+..++|- |+..|++++++ ||.. .+ .|.++.+..
T Consensus 152 n~RvAri~l~~~~~d~Ii~iP-n~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~ 230 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVP-NVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA 230 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECT-TCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred CcceEEEECCcEeeceeEeCC-CCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence 357778888888888888774 46678888886 68888888875 2321 11 122222222
Q ss_pred eeeecCCCcEEEEEeecCCCCEEEEeeCCC---------------cEEEEEc-------------------------cc-
Q 040533 123 RNLEGHDKRVATASWNHWNGHILTSGSQDK---------------SIINHDV-------------------------RV- 161 (364)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------------~i~~~d~-------------------------~~- 161 (364)
.++.- .+....+...+ ++.+.++.+.+. .+.++|+ +.
T Consensus 231 ~Qv~v-~gnld~~~~~~-~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~ 308 (638)
T 3sbq_A 231 FQVIV-DGNLDNTDADY-TGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKK 308 (638)
T ss_dssp EEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCB
T ss_pred EEEEc-CCChhhcCCCC-CCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccc
Confidence 21110 11222233344 455555544321 2344443 22
Q ss_pred ---CcceeeeeecccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCC---------CcceEEecccccceeEEEEcc
Q 040533 162 ---SNNVTSRINAHTAEVCGLKWSNEGNLLASGG-DDNLVHVWDHSKMSS---------SKCLHRFRDHRAAVKALAWCP 228 (364)
Q Consensus 162 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~v~~~~~~~ 228 (364)
+......+ .-......+..+|||++++.++ -+.++.++|+++... ...+..-..-.-.....+|.+
T Consensus 309 ~~~~~~~~~~i-P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~ 387 (638)
T 3sbq_A 309 DGKDSKFTRYV-PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG 387 (638)
T ss_dssp TTBCCSSEEEE-EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS
T ss_pred cccCCceEEEE-eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC
Confidence 11111111 1223345688999999888776 567899999874211 011111111233456789999
Q ss_pred CCCcEEEeecCCCCCeEEEEECCCC----------eEEEEEecCCCeEEEEE------cCCccceeeeccC
Q 040533 229 YQFNVLASGGGTQDGCIKIWNVQKG----------TCIHSVDTKAQICGLEW------NRHHKEILSGHGF 283 (364)
Q Consensus 229 ~~~~~~~~~~g~~d~~i~i~d~~~~----------~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~~ 283 (364)
+| +...+-. .|..|.-|++... ..+..+..+-++-.+.- .++|++|++...+
T Consensus 388 ~G-~aYTtlf--idSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~ 455 (638)
T 3sbq_A 388 RG-NAYTTLF--IDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKF 455 (638)
T ss_dssp SS-EEEEEET--TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESC
T ss_pred CC-ceEeeee--ecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEeccc
Confidence 98 6777765 8999999998653 45666766665555544 5778888776543
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.018 Score=47.97 Aligned_cols=116 Identities=9% Similarity=0.019 Sum_probs=63.9
Q ss_pred CCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEE--cC-CCCEEEEE-eCCCeEEEEeCCCCCCCcceEEecc-
Q 040533 142 GHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKW--SN-EGNLLASG-GDDNLVHVWDHSKMSSSKCLHRFRD- 216 (364)
Q Consensus 142 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~- 216 (364)
+.+++.++.||.|.-.|..+++.....-.....++....- .+ ++..++.. +.||.|..++..++.. ...+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~---~~~~~~~ 86 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ---KLPLSIR 86 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE---EEEEEHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE---Eeeeccc
Confidence 3578888999999999988776533322221122222110 01 22333333 5899999999765421 122111
Q ss_pred ---cccceeE---EEE-cc----CCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCC
Q 040533 217 ---HRAAVKA---LAW-CP----YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKA 263 (364)
Q Consensus 217 ---~~~~v~~---~~~-~~----~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 263 (364)
...++.. ... .+ .+ ..+.+++ .+|.+...|+++|+.+..+....
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~-g~Vy~Gs--~~g~l~ald~~tG~~~W~~~~~~ 141 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVED-EKVYTGS--MRTIMYTINMLNGEIISAFGPGS 141 (339)
T ss_dssp HHHTTCSEEEECC----------CC-EEEEECE--EEEEEEEEETTTCCEEEEESTTC
T ss_pred cceeccccccCCCceeecccccccC-CEEEEEe--cCCEEEEEECCCCcEEEEEecCC
Confidence 0111111 000 00 22 3455554 89999999999999999987553
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.92 E-value=0.56 Score=38.43 Aligned_cols=237 Identities=14% Similarity=0.074 Sum_probs=124.7
Q ss_pred CCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecC--------------CcEEEEecCCcceeeeeecCC
Q 040533 64 GLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMA--------------SKLQLWDAETSKLIRNLEGHD 129 (364)
Q Consensus 64 ~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------g~i~iw~~~~~~~~~~~~~~~ 129 (364)
++.|+..+.+.....++..- .+--+++++.+|+..... ..|+..+++.++... +...
T Consensus 36 ~~~ly~~~~dg~~~~~l~~~-------~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~- 106 (302)
T 3s25_A 36 NGRLYAMNIDGSNIHKLSND-------TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD- 106 (302)
T ss_dssp TTEEEEEETTSCSCEEEEEE-------EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS-
T ss_pred CceEEEEcCCCCCCEEccCC-------ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC-
Confidence 46777777666554444321 134567899988887653 357777777665332 3222
Q ss_pred CcEEEEEeecCCCCEEEEee--CCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCC
Q 040533 130 KRVATASWNHWNGHILTSGS--QDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGD-DNLVHVWDHSKMS 206 (364)
Q Consensus 130 ~~v~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~ 206 (364)
. ...|++ .++.|+-.. .++.-.||.+.........+..+.. .+++++++.|+-.+. ...|...++....
T Consensus 107 -~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 107 -P--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS 178 (302)
T ss_dssp -C--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred -C--ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC
Confidence 2 226677 777777655 3444444444332222333433332 456778888876665 5678888866432
Q ss_pred CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEecCCCeEEEEEcCCccceeeeccCCcc
Q 040533 207 SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSS 286 (364)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 286 (364)
. ..+.. +... ..+.|++..++.+..+ ....|..-++..... ..+. ...+ ..++|.+..|+-+..
T Consensus 179 ~----~~l~~--~~~~-~~~~P~g~~iy~t~~~-~~~~I~~~~ldG~~~-~~Lt-~~~~--~~~~~~g~~Iy~~~~---- 242 (302)
T 3s25_A 179 E----ALFYD--CNCY-KPVVLDDTNVYYMDVN-RDNAIVHVNINNPNP-VVLT-EANI--EHYNVYGSLIFYQRG---- 242 (302)
T ss_dssp E----EEEEC--SCEE-EEEEEETTEEEEEEGG-GTTEEEEECSSSCCC-EECS-CSCE--EEEEEETTEEEEEEC----
T ss_pred E----EEEeC--CCcc-ceeeecCCEEEEEEcC-CCcEEEEEECCCCCe-EEEe-CCCc--ceEEECCCEEEEEEC----
Confidence 1 22211 2222 3356888888777531 124677777765442 2222 2333 347788888875421
Q ss_pred CCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEEEEe-CCCcEEEEE
Q 040533 287 GDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVVSAA-ADETLRFWE 338 (364)
Q Consensus 287 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~vw~ 338 (364)
...+.|..-++........... .+..+ ++.+.+|+-.. ..+.|..-+
T Consensus 243 ~~~~~i~~~~~DG~~r~~l~~~---~~~~i--~i~~d~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 243 GDNPALCVVKNDGTGFKELAKG---EFCNI--NVTSQYVYFTDFVSNKEYCTS 290 (302)
T ss_dssp SSSCEEEEEETTSCCCEEEEES---CEEEE--EECSSEEEEEETTTCCEEEEE
T ss_pred CCCcEEEEEECCCCccEEeeCC---ccceE--EEeCCEEEEEECCCCeEEEEE
Confidence 2246777777654333222221 23333 44566665554 334444333
No 347
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.83 E-value=1.2 Score=41.71 Aligned_cols=265 Identities=12% Similarity=0.095 Sum_probs=142.6
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee-
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE- 126 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~- 126 (364)
+.++.-..++.+=++.++.+..||..+.+..... ......|.++.. .++ .|..|+.+ -+..||..+++.. .+.
T Consensus 65 i~~i~~d~~g~lWigT~~Gl~~yd~~~~~f~~~~--~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~ 138 (758)
T 3ott_A 65 IYCGVIIDNTYLYMGTDNGILVYNYRADRYEQPE--TDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDT 138 (758)
T ss_dssp EEEEEEETTTEEEEEETTEEEEEETTTTEECCCS--CCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECH
T ss_pred EEEEEEcCCCcEEEEeCCCeEEEeCCCCEEECcc--cCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-Eecc
Confidence 4444334444444444567899998877653311 112335777654 344 56667655 5888998765543 221
Q ss_pred ----cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec----ccCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040533 127 ----GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA----HTAEVCGLKWSNEGNLLASGGDDNLVH 198 (364)
Q Consensus 127 ----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~ 198 (364)
.....|.++.... ++.+.+ |+.+ -+..++..+.......... ....|.++...+++..|..|+. +-+.
T Consensus 139 ~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~ 214 (758)
T 3ott_A 139 RRNGLPNNTIYSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLF 214 (758)
T ss_dssp HHHCCSCSCEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEE
T ss_pred CCCCcCCCeEEEEEEcC-CCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCe
Confidence 1234688887765 565554 4544 4777886644311111111 1234888888777665555664 4588
Q ss_pred EEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEe--------cCCCeEEEEE
Q 040533 199 VWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD--------TKAQICGLEW 270 (364)
Q Consensus 199 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------~~~~v~~~~~ 270 (364)
.+|...... .....+ ....|.++...+++...+.+ .+ -+.+++..+++...... ....|.++..
T Consensus 215 ~~~~~~~~~-~~~~~l--~~~~i~~i~~d~~g~lWigT----~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 286 (758)
T 3ott_A 215 QYFPSTGQI-KQTEAF--HNNSIKSLALDGNGDLLAGT----DN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFA 286 (758)
T ss_dssp EEETTTTEE-EEEEEE--EEEEEEEEEECTTCCEEEEE----TT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEE
T ss_pred EEcCCCCeE-EeccCC--CCCeEEEEEEcCCCCEEEEe----CC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEE
Confidence 888654321 111111 23458888888777444443 23 48888887654432211 1234888888
Q ss_pred cCCccceeeeccCCccCCCCeEEEeeCCCCceeeecc-----ccccceeEEeecCCCCEEEEEeCCCcEEEEEee
Q 040533 271 NRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQ-----HQTSRILELSQSPDGLTVVSAAADETLRFWEAF 340 (364)
Q Consensus 271 ~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~ 340 (364)
..+|..-+... .| +.++.....-...... .....|.++.-..+|.+.+. +.+| +..++..
T Consensus 287 D~~g~lWiGT~-------~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~ 351 (758)
T 3ott_A 287 DQEHNIWLGTD-------YG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDP 351 (758)
T ss_dssp CTTCCEEEEES-------SS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCT
T ss_pred cCCCCEEEEeC-------Cc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeeccc
Confidence 88887666542 34 4444322111111110 12346888888888875554 4444 5555543
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.40 E-value=0.85 Score=36.89 Aligned_cols=226 Identities=14% Similarity=0.097 Sum_probs=116.1
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceee
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTS 167 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 167 (364)
..|..++.... ..++. . ||.|..|-......+..-......|..++.. ....++. . ||.|..|-.....++-.
T Consensus 24 ~~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G--~~hs~~l-~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 24 SGVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLAL-K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SSCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEEC--SSEEEEE-E-TTEEEEEECCTTSTTCC
T ss_pred CCCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeC--CCEEEEE-E-CCEEEEeeCCCCCCCCC
Confidence 35777776533 23333 4 8999999765432222111123356666653 2233333 4 89999998665433211
Q ss_pred eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEE
Q 040533 168 RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKI 247 (364)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 247 (364)
...-...|..++...+ ..+.-. +|.|+.|-...... +-........|..++.-.. +.++. .||.|..
T Consensus 97 -P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gq---lg~~~~~~~~i~~i~~G~~--~~~~l----~~G~v~~ 163 (282)
T 3qhy_B 97 -PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQ---TTVPAEAQSGVTALDGGVY--TALAV----KNGGVIA 163 (282)
T ss_dssp -CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTST---TSCCGGGGSSEEEEEECSS--EEEEE----ETTEEEE
T ss_pred -CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCc---CCCCccCCCCeEEEEcccC--EEEEE----ECCEEEE
Confidence 1112346777776654 333344 89999997544221 1111112345666655433 22222 2688888
Q ss_pred EECCCCeEEE-EEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceeeeccccccceeEEeecCCCCEEE
Q 040533 248 WNVQKGTCIH-SVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQTSRILELSQSPDGLTVV 326 (364)
Q Consensus 248 ~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 326 (364)
|-......+. .......+..++-......++ . ++.++.|-......+..-......|..++..... .++
T Consensus 164 wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al-~--------~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~a 233 (282)
T 3qhy_B 164 WGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-K--------DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLA 233 (282)
T ss_dssp EECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-E--------TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEE
T ss_pred ecCCCCCCCCCceecCCCeEEEEecCCEEEEE-E--------CCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEE
Confidence 8654321110 001123456665544443333 2 8888888765433322111122356677654433 233
Q ss_pred EEeCCCcEEEEEeeCCCCC
Q 040533 327 SAAADETLRFWEAFGPSGS 345 (364)
Q Consensus 327 ~~~~dg~i~vw~~~~~~~~ 345 (364)
-. ||.|+.|=.....++
T Consensus 234 -l~-~g~v~~wG~n~~gq~ 250 (282)
T 3qhy_B 234 -LK-NGKVIAWGSSRTAPS 250 (282)
T ss_dssp -EE-TTEEEEESTTCCCCG
T ss_pred -EE-CCEEEEecCCCCccc
Confidence 33 899999976654443
No 349
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.37 E-value=1 Score=37.75 Aligned_cols=225 Identities=10% Similarity=0.075 Sum_probs=115.9
Q ss_pred eecccCCCc-c-EEEEEeCCeEEEEECCCCceee-eeee----cCCCCCceEEEEcCC---CCEEEEEe-c-------CC
Q 040533 48 SNMMDWGRN-N-ILAIALGLELYLWKQENGEVQK-LLKV----TGEDDFPTSISWSQD---AKTLAVGY-M-------AS 109 (364)
Q Consensus 48 ~~~~~~~~~-~-~~~~~~~~~i~iw~~~~~~~~~-~~~~----~~~~~~v~~~~~s~~---~~~l~~~~-~-------dg 109 (364)
...++|.|+ + ++++...+.|++++.. +.... +..+ .........++++|+ +..|.+.. . ..
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 456777775 4 6666678899999854 33211 1111 122345689999996 44454443 2 23
Q ss_pred cEEEEecCCc--c--eeee-eec------CCCcEEEEEeecCCCCEEEEeeC-------------CCcEEEEEcccCc--
Q 040533 110 KLQLWDAETS--K--LIRN-LEG------HDKRVATASWNHWNGHILTSGSQ-------------DKSIINHDVRVSN-- 163 (364)
Q Consensus 110 ~i~iw~~~~~--~--~~~~-~~~------~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~~~d~~~~~-- 163 (364)
.|..|++..+ . ..+. +.. ....-..++|.| ++.++++.+. .|.|.-++....-
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 5666666432 1 1111 111 111235699999 8876666433 2456666665320
Q ss_pred ----------ceeeeeecccCcEEEEEEcC-CCCEEEEEeCC--CeEEEEeCCCCCC-----------------------
Q 040533 164 ----------NVTSRINAHTAEVCGLKWSN-EGNLLASGGDD--NLVHVWDHSKMSS----------------------- 207 (364)
Q Consensus 164 ----------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d--~~i~iwd~~~~~~----------------------- 207 (364)
.......++ .....++|+| ++.+ .++... +.=.|.-+..+..
T Consensus 178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l-~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNAL-WLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEE-EEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCcCCCCCCccEEEEcC-cCccceEEECCCCCE-EEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 111111233 3467899999 5544 443322 1112222211110
Q ss_pred -----CcceEEecccccceeEEEEcc-------CCCcEEEeecCCCCCeEEEEECCCCeEEEEEe----cCCCeEEEEEc
Q 040533 208 -----SKCLHRFRDHRAAVKALAWCP-------YQFNVLASGGGTQDGCIKIWNVQKGTCIHSVD----TKAQICGLEWN 271 (364)
Q Consensus 208 -----~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~~ 271 (364)
..++..+..| .....+.|.. ++ .++++.. ..+.|...++..++...... ....+..+++.
T Consensus 256 ~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g-~l~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQ-KLFIGAL--KDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp SCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTT-EEEEEET--TTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCccCCeEEeCCC-cCcceeEEECCccCcccCC-cEEEEEc--cCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 1112222222 3456677753 23 4555543 56788888877665443321 13468899999
Q ss_pred CCccceeee
Q 040533 272 RHHKEILSG 280 (364)
Q Consensus 272 ~~~~~l~~~ 280 (364)
|+|.+.++.
T Consensus 332 pdG~lyv~t 340 (353)
T 2g8s_A 332 PDGYLYVLT 340 (353)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 998766543
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=94.65 E-value=1.8 Score=36.81 Aligned_cols=294 Identities=8% Similarity=-0.013 Sum_probs=132.0
Q ss_pred cEEEEEeCCeEEEEECCC-C-ceeeeeeecCCCCCceEEEEcC-CCCEEEEEecCC----cEEEEecCCcceeeeeec--
Q 040533 57 NILAIALGLELYLWKQEN-G-EVQKLLKVTGEDDFPTSISWSQ-DAKTLAVGYMAS----KLQLWDAETSKLIRNLEG-- 127 (364)
Q Consensus 57 ~~~~~~~~~~i~iw~~~~-~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~-- 127 (364)
.++++...| +.+++... + ........ .....|.+|++.| +...|.+++..| .|...+ +.++.-..+..
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence 455555544 66666543 2 33222111 2245699999998 333444555555 344332 33332222211
Q ss_pred ------------CCCcEEEEEeecCC-CCEEEEeeCCCcEEEEEcccCcceeeeee-------------------cccCc
Q 040533 128 ------------HDKRVATASWNHWN-GHILTSGSQDKSIINHDVRVSNNVTSRIN-------------------AHTAE 175 (364)
Q Consensus 128 ------------~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------------------~~~~~ 175 (364)
....|.++++.|.+ ...+.++...+.|...+- .+.. ...+. .....
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~t-W~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGAS-WEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSB-CEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCC-eEECcCccCCccccccccccccCCCCCCc
Confidence 11257788998744 566666666665544431 1221 11111 11235
Q ss_pred EEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCCcceEE-ecc-c--------ccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 176 VCGLKWSNE-GNLLASGGDDNLVHVWDHSKMSSSKCLHR-FRD-H--------RAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 176 v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~-~--------~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
+.+|.+.|. ...++.+..++.|...+-. +...+.+.. ... + ...+.++.++|.....+..+. .+-
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~---~~g 254 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN---HCG 254 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE---TTE
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc---CCe
Confidence 788999883 3445555544545443311 111111110 000 0 124788999987444444443 334
Q ss_pred EEEEECCCCeEEEEEec--C----CCeEEEEEcCC-ccceeeeccCC-----ccCCCCeEEEeeCCC-Cceeeecc----
Q 040533 245 IKIWNVQKGTCIHSVDT--K----AQICGLEWNRH-HKEILSGHGFS-----SSGDGQKLCLWKYPH-MTKWGELQ---- 307 (364)
Q Consensus 245 i~i~d~~~~~~~~~~~~--~----~~v~~~~~~~~-~~~l~~~~~~~-----~~~~~~~i~i~d~~~-~~~~~~~~---- 307 (364)
|...+- .++.-..+.. . ..+..+.++|. ...+.++..-. ....++...+|...+ ++....+.
T Consensus 255 l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp 333 (394)
T 3b7f_A 255 IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLP 333 (394)
T ss_dssp EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSC
T ss_pred EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCC
Confidence 544432 2333322221 1 23567778763 33344432100 000122234444433 23332221
Q ss_pred cccc----ceeEEeecCC-CCEEEEEeCCCcEEEEEeeCCCCCcceeccCCceeeeeec
Q 040533 308 HQTS----RILELSQSPD-GLTVVSAAADETLRFWEAFGPSGSGDFVSHLDGLLSLKVS 361 (364)
Q Consensus 308 ~~~~----~i~~i~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s 361 (364)
.... ....++++|. ...|+.++.++.|..- ...++.-..+..+...+.+|+|-
T Consensus 334 ~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S-~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 334 TDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS-ADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp CSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE-SSTTSBCEEEECSCSCEEEEEEE
T ss_pred CccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE-CCCCCCceEcccCCCCeeEEEEe
Confidence 1000 1135778874 3456667666654322 12233333444444567788764
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.28 E-value=2.5 Score=36.93 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=60.0
Q ss_pred CCceEEEEcCCCC-EEEEEecCCcEEEEecCCcc---eeeeee---------cCCCcEEEEEeecC---CCCEEEEeeCC
Q 040533 88 DFPTSISWSQDAK-TLAVGYMASKLQLWDAETSK---LIRNLE---------GHDKRVATASWNHW---NGHILTSGSQD 151 (364)
Q Consensus 88 ~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~---~~~~~~---------~~~~~v~~~~~~~~---~~~~l~~~~~d 151 (364)
.....|+|.|||. .|+++...|.|++++..... .+..+. ........|+|+|. ++.+.++-+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3468999999996 45555678999999754221 111111 11456789999982 24444443321
Q ss_pred ------------CcEEEEEcccC---------cceeeeee--cccCcEEEEEEcCCCCEEEEEeCC
Q 040533 152 ------------KSIINHDVRVS---------NNVTSRIN--AHTAEVCGLKWSNEGNLLASGGDD 194 (364)
Q Consensus 152 ------------g~i~~~d~~~~---------~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d 194 (364)
..|.-|.+... ...+.... ........|+|.|||.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 13444555321 11111111 122346789999999877766543
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=90.67 E-value=5.5 Score=38.51 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=32.5
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56777778888899999999999999999998887643
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.83 E-value=6.7 Score=31.56 Aligned_cols=236 Identities=12% Similarity=0.105 Sum_probs=118.5
Q ss_pred ecccCCCccEEEEEeCCeEEEEECCCCceeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeecC
Q 040533 49 NMMDWGRNNILAIALGLELYLWKQENGEVQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEGH 128 (364)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 128 (364)
..++-.....++.. |+.|+.|-........+-. .....|..++...+- .++. . ||.|..|-......+..-..-
T Consensus 27 ~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~--~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~ 100 (282)
T 3qhy_B 27 DAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA--ATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEA 100 (282)
T ss_dssp CEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG--GGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGG
T ss_pred cEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc--cCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCccc
Confidence 33444445566666 9999999865432111111 113357777765432 3344 4 899999976543222111112
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCC
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSS 208 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 208 (364)
...|..++.. ....+.-. +|.|..|-.....++-. .......|..++...+. .+.-. ||.|+.|-......
T Consensus 101 ~~~v~~ia~G---~~hs~al~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gq- 171 (282)
T 3qhy_B 101 RSGVDAIAAG---AWASYALK-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQ- 171 (282)
T ss_dssp SSSEEEEEEE---TTEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTST-
T ss_pred CCCeEEEECc---CCEEEEEe-CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCC-
Confidence 3467777764 34444445 99999998765443211 11233567777765443 22233 79999997544221
Q ss_pred cceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEE-EecCCCeEEEEEcCCccceeeeccCCccC
Q 040533 209 KCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHS-VDTKAQICGLEWNRHHKEILSGHGFSSSG 287 (364)
Q Consensus 209 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~ 287 (364)
+.........|..++.-.. +.++. . ||.|..|=....-.+.. .+....|..++-......++ .
T Consensus 172 --lg~p~~~~~~v~~i~~G~~--hs~al-~---~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al--------~ 235 (282)
T 3qhy_B 172 --TTVPAEAQSGVDDVAGGIF--HSLAL-K---DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLAL--------K 235 (282)
T ss_dssp --TSCCGGGGSSEEEEEECSS--EEEEE-E---TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEE--------E
T ss_pred --CCCceecCCCeEEEEecCC--EEEEE-E---CCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEE--------E
Confidence 1111112345666665443 33333 2 78888886543211100 01112344444332222221 2
Q ss_pred CCCeEEEeeCCCCceeeeccccccceeEEeecC
Q 040533 288 DGQKLCLWKYPHMTKWGELQHQTSRILELSQSP 320 (364)
Q Consensus 288 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 320 (364)
++.++.|-.....++.. ...|.+++-..
T Consensus 236 -~g~v~~wG~n~~gq~~v----~~~v~~iaaG~ 263 (282)
T 3qhy_B 236 -NGKVIAWGSSRTAPSSV----QSGVSSIEAGP 263 (282)
T ss_dssp -TTEEEEESTTCCCCGGG----SSCEEEEEECS
T ss_pred -CCEEEEecCCCCccccC----CCCcEEEEECc
Confidence 77888887655443322 12455555433
No 354
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.65 E-value=5.8 Score=39.28 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeee
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLE 126 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 126 (364)
.+.+++..++..++++-+.|++++||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566677788899999999999999999998887644
No 355
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=78.25 E-value=13 Score=34.38 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=29.2
Q ss_pred CceEEEEcCCCCEEEEEecCCcEEEEecCCcceeeeeec
Q 040533 89 FPTSISWSQDAKTLAVGYMASKLQLWDAETSKLIRNLEG 127 (364)
Q Consensus 89 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 127 (364)
.|.++.+ +..++++-+.|.++++|++.+++++....-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555444 467999999999999999999988876553
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.15 E-value=51 Score=31.87 Aligned_cols=39 Identities=8% Similarity=0.257 Sum_probs=29.6
Q ss_pred ceeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 220 AVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 220 ~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
.+.+++..++..++++.+ .|+++|+|++.+++++.+.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~---~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLS---LDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEE---TTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEE---CCCEEEEEECCCCCeEeeecc
Confidence 456666676665555554 799999999999999988753
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=76.44 E-value=49 Score=30.75 Aligned_cols=202 Identities=8% Similarity=0.014 Sum_probs=100.3
Q ss_pred eecCCCCEEEE-eeCCC----cEEEEEcccCcceeeeee-cccC------cEEEEEEcCCCCEEEEE----------eCC
Q 040533 137 WNHWNGHILTS-GSQDK----SIINHDVRVSNNVTSRIN-AHTA------EVCGLKWSNEGNLLASG----------GDD 194 (364)
Q Consensus 137 ~~~~~~~~l~~-~~~dg----~i~~~d~~~~~~~~~~~~-~~~~------~v~~~~~~~~~~~l~~~----------~~d 194 (364)
++| ++++++. -+..| .++++|+.+++.+...+. .-+. ....++|..+...+++. +..
T Consensus 137 ~~~-~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQ-NPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSS-STTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSB
T ss_pred cCC-CCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCC
Confidence 677 6655544 33333 699999998764322222 0000 11234676443344331 122
Q ss_pred CeEEEEeCCCCCCCcceEEecccccc-eeEEEEccCCCc----EEEeec-CCCCCeEEEEECCC--CeEEEEEecCCCeE
Q 040533 195 NLVHVWDHSKMSSSKCLHRFRDHRAA-VKALAWCPYQFN----VLASGG-GTQDGCIKIWNVQK--GTCIHSVDTKAQIC 266 (364)
Q Consensus 195 ~~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~----~~~~~~-g~~d~~i~i~d~~~--~~~~~~~~~~~~v~ 266 (364)
..|+.|.+-+... .-...+.+.... -.+...++++.+ ++++.+ +.....+.+.|... ++ ...+.......
T Consensus 216 ~~v~~~~~Gt~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 293 (711)
T 4hvt_A 216 NSLYIWKRGESIE-KAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSDAT 293 (711)
T ss_dssp CEEEEEETTSCGG-GCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTTCE
T ss_pred CEEEEEECCCChH-HCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCcce
Confidence 5688888765432 112223322222 234555666654 344332 22335677777653 33 23333222222
Q ss_pred EEEEcCCccceeeecc-CC---ccCCCCeEEEeeCCCCc-------eeee-cc-ccccceeEEeecCCCCEEEEEeCCCc
Q 040533 267 GLEWNRHHKEILSGHG-FS---SSGDGQKLCLWKYPHMT-------KWGE-LQ-HQTSRILELSQSPDGLTVVSAAADET 333 (364)
Q Consensus 267 ~~~~~~~~~~l~~~~~-~~---~~~~~~~i~i~d~~~~~-------~~~~-~~-~~~~~i~~i~~~~~~~~l~~~~~dg~ 333 (364)
+..+.++.+++.... .. .....+.|...++.++. .... +. .....+..+.+..+ .++++...++.
T Consensus 294 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~ 371 (711)
T 4hvt_A 294 -LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVV 371 (711)
T ss_dssp -EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTE
T ss_pred -EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCE
Confidence 233445555553211 00 01137788899887642 2222 22 23456778888866 56777777765
Q ss_pred --EEEEEeeCCC
Q 040533 334 --LRFWEAFGPS 343 (364)
Q Consensus 334 --i~vw~~~~~~ 343 (364)
|.++++.+++
T Consensus 372 ~~l~~~~~~~g~ 383 (711)
T 4hvt_A 372 AKVVTFTLENEQ 383 (711)
T ss_dssp EEEEEECEETTE
T ss_pred EEEEEEECCCCc
Confidence 6777776653
No 358
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=75.97 E-value=35 Score=28.76 Aligned_cols=99 Identities=7% Similarity=-0.035 Sum_probs=51.9
Q ss_pred CEEEEEecCCcEEEEecCC-cceeeee--ecCCCcEEEEEeecCCCCEEEEeeCCC----cEEEEEcccCcceeeeee--
Q 040533 100 KTLAVGYMASKLQLWDAET-SKLIRNL--EGHDKRVATASWNHWNGHILTSGSQDK----SIINHDVRVSNNVTSRIN-- 170 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~~~~-- 170 (364)
..|.+|+..| +.+++... ++.-..+ ......|.+|++.|.+...|.++...| .|...+ +.+.. ...+.
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~t-W~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGN-WTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSC-CEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCC-ceECCcc
Confidence 4677787776 65665432 2222222 123467999999885556666666555 343332 11221 11111
Q ss_pred ----c--------ccCcEEEEEEcC-C-CCEEEEEeCCCeEEEEe
Q 040533 171 ----A--------HTAEVCGLKWSN-E-GNLLASGGDDNLVHVWD 201 (364)
Q Consensus 171 ----~--------~~~~v~~~~~~~-~-~~~l~~~~~d~~i~iwd 201 (364)
. ....|.++++.| + ...+..++..+.|...+
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~ 144 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST 144 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc
Confidence 0 112577899987 2 45566666566665543
No 359
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=75.91 E-value=35 Score=28.80 Aligned_cols=186 Identities=8% Similarity=0.028 Sum_probs=98.5
Q ss_pred eEEEEECCCC--ceeeeeeecC----CCCCceEEEEc---CC----CCEEEEEe-cCCcEEEEecCCcceeeeeecCCCc
Q 040533 66 ELYLWKQENG--EVQKLLKVTG----EDDFPTSISWS---QD----AKTLAVGY-MASKLQLWDAETSKLIRNLEGHDKR 131 (364)
Q Consensus 66 ~i~iw~~~~~--~~~~~~~~~~----~~~~v~~~~~s---~~----~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~ 131 (364)
.|.+||+.++ +..+...++. ....+..+++. |+ +.++..+. ..+-|.|+|+.+++..+.+. .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~--~-- 199 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTH--P-- 199 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEEC--G--
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEcc--C--
Confidence 7889999998 8777776642 23457778877 22 23444443 35679999999998776553 2
Q ss_pred EEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeecccCcEEEEEEcCC----CCEEEEEeCCC-eEEEEe---CC
Q 040533 132 VATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINAHTAEVCGLKWSNE----GNLLASGGDDN-LVHVWD---HS 203 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~-~i~iwd---~~ 203 (364)
.|.| +...... -+|.-.- -...+..|+++|+ ++.|+...-.+ .++--. ++
T Consensus 200 ----~~~p-d~~~~~~--i~G~~~~---------------~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~ 257 (381)
T 3q6k_A 200 ----TFKA-ERPTKFD--YGGKEYE---------------FKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELK 257 (381)
T ss_dssp ----GGSC-CSCEEEE--ETTEEEE---------------ECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHS
T ss_pred ----CCcc-ccCcceE--ECCEEeE---------------eccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhh
Confidence 1445 3211111 1221110 1245888999997 67777665444 233222 22
Q ss_pred CCCCCcceEEecccc--cceeEEEEccCCCcEEEeecCCCCCeEEEEECCC-C---eEEEEEecC---CCeEEEEEcCCc
Q 040533 204 KMSSSKCLHRFRDHR--AAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK-G---TCIHSVDTK---AQICGLEWNRHH 274 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~---~~~~~~~~~---~~v~~~~~~~~~ 274 (364)
+......++.+.... ..-..++.++....++.+-- ..+.|..|+..+ . +....+... .....+.+.++|
T Consensus 258 ~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~--~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g 335 (381)
T 3q6k_A 258 QKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEA--NTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKG 335 (381)
T ss_dssp STTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEES--SSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTS
T ss_pred CcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEec--cCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCC
Confidence 222222233222111 22334566533336666654 788999999875 1 122222222 235666665555
Q ss_pred cceee
Q 040533 275 KEILS 279 (364)
Q Consensus 275 ~~l~~ 279 (364)
.+.+.
T Consensus 336 ~Lwv~ 340 (381)
T 3q6k_A 336 GLWFM 340 (381)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 44333
No 360
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=74.97 E-value=57 Score=30.77 Aligned_cols=148 Identities=9% Similarity=-0.026 Sum_probs=72.1
Q ss_pred CCCceEEEEcCC-CCEEEEEecCCcEEEEecCCcceeeeeecC-------CCcEEEEEeecCCCCEEEEeeCCCc----E
Q 040533 87 DDFPTSISWSQD-AKTLAVGYMASKLQLWDAETSKLIRNLEGH-------DKRVATASWNHWNGHILTSGSQDKS----I 154 (364)
Q Consensus 87 ~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~dg~----i 154 (364)
...|.+|+++|. ...+.+++..+.|...+ +.|+.-..+..+ ...+.++++.|.+.+.++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 458999999995 35566666667665554 334433333322 2469999999854455555443211 2
Q ss_pred EEEEcccCcceeeeeec---------ccCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCCCcceEEec---ccccce
Q 040533 155 INHDVRVSNNVTSRINA---------HTAEVCGLKWSNE-GNLLASGGDDNLVHVWDHSKMSSSKCLHRFR---DHRAAV 221 (364)
Q Consensus 155 ~~~d~~~~~~~~~~~~~---------~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~v 221 (364)
.||.-..+..-...... ....+..++++|. ...++.+...+.|.. ....++..+.+.... .....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCe
Confidence 33333222211111111 0113456778774 345555553443321 112222222221111 112457
Q ss_pred eEEEEccCCC-cEEEe
Q 040533 222 KALAWCPYQF-NVLAS 236 (364)
Q Consensus 222 ~~~~~~~~~~-~~~~~ 236 (364)
..+.++|... .+++.
T Consensus 172 ~~i~~~p~~~~~~~~~ 187 (789)
T 1sqj_A 172 TSVIFDPERNGTIYAS 187 (789)
T ss_dssp EEEEECTTSTTCEEEE
T ss_pred EEEEECCCCCCEEEEE
Confidence 7888988654 44443
No 361
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=73.79 E-value=36 Score=27.99 Aligned_cols=145 Identities=14% Similarity=0.086 Sum_probs=87.4
Q ss_pred ccEEEEEeCCeEEEEEC---CCC------ce-eeeeeecCCCCCceEEEEcC---CCCEEEEEecCCcEEEEecCCcc--
Q 040533 56 NNILAIALGLELYLWKQ---ENG------EV-QKLLKVTGEDDFPTSISWSQ---DAKTLAVGYMASKLQLWDAETSK-- 120 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~---~~~------~~-~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~-- 120 (364)
+.++..+..|.++-... ... .. ...+.+. ....|.++..-+ +..+++..+.+|.++--.+....
T Consensus 54 d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~ 132 (327)
T 3uc1_A 54 DLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSN 132 (327)
T ss_dssp SEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCC
T ss_pred CEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcc
Confidence 56777888887776653 222 11 1122332 345565554433 57799999999999998875432
Q ss_pred -----eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc--cCcc--------eeeeeecccCcEEEEEEcCCC
Q 040533 121 -----LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR--VSNN--------VTSRINAHTAEVCGLKWSNEG 185 (364)
Q Consensus 121 -----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~--~~~~--------~~~~~~~~~~~v~~~~~~~~~ 185 (364)
....+.. ...+..+.... ..+.++..+..|.+..+... .-.. ....+ .....|.++...+++
T Consensus 133 ~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~ 209 (327)
T 3uc1_A 133 RSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREG 209 (327)
T ss_dssp CSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTT
T ss_pred ccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCC
Confidence 1223333 34455555544 55678888889998888765 2110 00112 234557776666666
Q ss_pred CEEEEEeCCCeEEEEeCCC
Q 040533 186 NLLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 186 ~~l~~~~~d~~i~iwd~~~ 204 (364)
..++..+..|.++.-.+..
T Consensus 210 ~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 210 TYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp CEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHH
Confidence 7888999999998877543
No 362
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=73.59 E-value=17 Score=32.65 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=43.5
Q ss_pred CeEEEEEcCCccceeeeccCCc------cCCCCeEEEeeCCCCceeeecccc-ccceeEEeecCCCCEEEEE
Q 040533 264 QICGLEWNRHHKEILSGHGFSS------SGDGQKLCLWKYPHMTKWGELQHQ-TSRILELSQSPDGLTVVSA 328 (364)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~~~~------~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~ 328 (364)
....|.|+++|.+.++...-.. .-..+.+..++..+++....+... ...++.++|+||++.|+++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 3567899999988774432100 011336777787777765555433 3578999999999988776
No 363
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=72.74 E-value=42 Score=28.29 Aligned_cols=269 Identities=13% Similarity=0.133 Sum_probs=123.3
Q ss_pred ccEEEEEeCCeEEEEECCC-Cce-------e-eeeeecC-CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc-----
Q 040533 56 NNILAIALGLELYLWKQEN-GEV-------Q-KLLKVTG-EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK----- 120 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~-~~~-------~-~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~----- 120 (364)
..+++...||.|+.|=... +++ . ....+.. ....|..++- -....++-..||.|..|-....-
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g 88 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIG 88 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence 4467778889999996543 211 0 0000000 0112334433 23445555678899998643211
Q ss_pred ------eeeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce----------eeeeec-ccCcEEEEEEc
Q 040533 121 ------LIRNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV----------TSRINA-HTAEVCGLKWS 182 (364)
Q Consensus 121 ------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----------~~~~~~-~~~~v~~~~~~ 182 (364)
....+.. ....+..++.+. .....+.-..||.|+.|-.....++ ...+.. ....|..++..
T Consensus 89 ~~~~~~~p~~v~~~~~~~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G 167 (389)
T 3kci_A 89 GTESVSTPTLLESIQHVFIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 167 (389)
T ss_dssp SSCCEEEEEECGGGTTSCEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CcCCccCCEEcccccCCceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC
Confidence 1111111 223455566665 6677777788999999965432210 111111 12256666654
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCC------Ccc--eEEecc-cccceeEEEEccCCCcEEEeecCCCCCeEEEEECCCC
Q 040533 183 NEGNLLASGGDDNLVHVWDHSKMSS------SKC--LHRFRD-HRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQKG 253 (364)
Q Consensus 183 ~~~~~l~~~~~d~~i~iwd~~~~~~------~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 253 (364)
. ...+.-..+|.|+.|=...... ... ...+.. ....|..++........++.. .||.|..|=....
T Consensus 168 ~--~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~---~~G~v~~wG~n~~ 242 (389)
T 3kci_A 168 G--AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT---DDDTVWSWGDGDY 242 (389)
T ss_dssp S--SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE---TTTEEEEEECCGG
T ss_pred c--CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEc---cCCEEEEEeCCCC
Confidence 3 3555667799999996432100 000 011111 123455565543222334433 5899999964321
Q ss_pred ----------eEE-EEEec--CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCcee-----------eeccc-
Q 040533 254 ----------TCI-HSVDT--KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKW-----------GELQH- 308 (364)
Q Consensus 254 ----------~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~-----------~~~~~- 308 (364)
... ..+.. ...+..++.......+++ .++.|+.|-.....++ ..+..
T Consensus 243 GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt--------~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l 314 (389)
T 3kci_A 243 GKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALT--------KSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL 314 (389)
T ss_dssp GTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEE--------TTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG
T ss_pred CCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEe--------CCCeEEEEeCCCCCCCCCCCCccccCCeEeccC
Confidence 111 11111 123555554443333332 2888888865431111 11111
Q ss_pred cccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 309 QTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 309 ~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
....|..|+. .....+....||.|+.|=....
T Consensus 315 ~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 315 QGKKVIAIAT--GSLHCVCCTEDGEVYTWGDNDE 346 (389)
T ss_dssp TTCCEEEEEE--CSSEEEEEETTCCEEEEECCTT
T ss_pred CCCCEEEEEe--ccCeEEEECCCCCEEEeeCCCC
Confidence 1124555554 3345555678899999976543
No 364
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=71.56 E-value=40 Score=27.50 Aligned_cols=231 Identities=10% Similarity=0.066 Sum_probs=117.7
Q ss_pred CCCCEEEEEecCCcEEEEecCCccee---------eeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCc----
Q 040533 97 QDAKTLAVGYMASKLQLWDAETSKLI---------RNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSN---- 163 (364)
Q Consensus 97 ~~~~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---- 163 (364)
++..++++.+.+|.|+--.+..-+.. ..+... ..+..+.... +.+.++..+..|.++-.....-.
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 46678888999999998876543211 112322 3344444444 56677778888987776653211
Q ss_pred -----ce--eeeeecccCcEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCCC----CcceEEecccccceeEEEEccC
Q 040533 164 -----NV--TSRINAHTAEVCGLKWSN---EGNLLASGGDDNLVHVWDHSKMSS----SKCLHRFRDHRAAVKALAWCPY 229 (364)
Q Consensus 164 -----~~--~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~ 229 (364)
.+ ...+. ....|..+...+ +..+++..+..|.++...+..... +.....+.. .+.+..+.....
T Consensus 84 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~ 161 (312)
T 1suu_A 84 ASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFK 161 (312)
T ss_dssp ----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECT
T ss_pred cCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCC
Confidence 00 00121 223454443332 456788889999999887654321 122223333 445555554433
Q ss_pred CCcEEEeecCCCCCeEEEEECCC---------CeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC
Q 040533 230 QFNVLASGGGTQDGCIKIWNVQK---------GTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 230 ~~~~~~~~~g~~d~~i~i~d~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
+..+++.. .+|.+..++... |.....+..+..+.++..-.++..+++.+ +.|..+...+...
T Consensus 162 ~~~i~l~T---~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt------~~G~~kr~~~~e~ 232 (312)
T 1suu_A 162 DEKVICLS---KKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVS------ENGYGKRLNMSKI 232 (312)
T ss_dssp TCEEEEEE---TTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEE------TTSEEEEEEGGGS
T ss_pred CCEEEEEe---CCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEE------CCCceEEEEHHHh
Confidence 33455443 688888887643 11222223345566665544444444442 2777777766332
Q ss_pred c---------eeeecc-ccccceeEE-eecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 301 T---------KWGELQ-HQTSRILEL-SQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 301 ~---------~~~~~~-~~~~~i~~i-~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
. ....+. .....+..+ .+. +...+...+..|.+.-..+..
T Consensus 233 ~~~~R~~kGv~~~~~~k~~~~~lv~~~~~~-~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 233 SELKRGATGYTSYKKSDKKAGSVVDAIAVS-EDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp CBCCTTCCCEECSCTTCTTTCSEEEEEEEC-TTCEEEEEETTCEEEEEEGGG
T ss_pred cccCCCCCCEEeeEccCCCCCeEEEEEEeC-CCCEEEEEeCCCeEEEEEccc
Confidence 1 111122 222334333 443 344555556667554444443
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=71.37 E-value=37 Score=27.09 Aligned_cols=197 Identities=10% Similarity=0.042 Sum_probs=99.5
Q ss_pred cEEEEEeecCCCCEEEEeeCCCcEEE---EEcccCcceeeeeecccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCC
Q 040533 131 RVATASWNHWNGHILTSGSQDKSIIN---HDVRVSNNVTSRINAHTAEVCGLKWSN-EGNLLASGGDDNLVHVWDHSKMS 206 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~~dg~i~~---~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 206 (364)
.+..+.-.. +.+.|+.-+..|.++. |++......- .+ .....|..+.... +..+++..+.+|.++-..+....
T Consensus 25 ~~~~~~~~~-t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll-~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 25 PVVNILRVP-FTEGLFLVSNRGRVYWIAGSQALQGSKVS-LK-SREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CEEEEEEEE-TTSCEEEEETTSEEEEECSHHHHTSEECC-CS-STTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred eEEEEEEEC-CCCEEEEEcCCCeEEEEEhhhCccCcccc-cC-CCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 444444444 4445555666666553 3332221111 12 2344555554321 45789999999999998765431
Q ss_pred ---CCcceEEecccccceeEEEEccCCCcEEEeecCCCCCeEEEEECCC---------CeEEEEEecCCCeEEEEEcCCc
Q 040533 207 ---SSKCLHRFRDHRAAVKALAWCPYQFNVLASGGGTQDGCIKIWNVQK---------GTCIHSVDTKAQICGLEWNRHH 274 (364)
Q Consensus 207 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---------~~~~~~~~~~~~v~~~~~~~~~ 274 (364)
.+.....++. .+.+..+........+++.. ..|.+..++... |.....+.....+..+...+++
T Consensus 102 ~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T---~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~ 177 (276)
T 3no0_A 102 YKAQGMPIIKLTE-GDEVVSIASSVDETHILLFT---KKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGE 177 (276)
T ss_dssp TCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEE---TTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSC
T ss_pred hhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEE---CCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCC
Confidence 1111122222 34455554444444455543 588888777532 2222223334556665554545
Q ss_pred cceeeeccCCccCCCCeEEEeeCCC-------CceeeeccccccceeEEeecCCCCEEEEEeCCCcEEE--EEeeC
Q 040533 275 KEILSGHGFSSSGDGQKLCLWKYPH-------MTKWGELQHQTSRILELSQSPDGLTVVSAAADETLRF--WEAFG 341 (364)
Q Consensus 275 ~~l~~~~~~~~~~~~~~i~i~d~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~v--w~~~~ 341 (364)
..++..+. .|.++...+.. ++-+..+ ...+.+..+....+...++..+.+|.+.. ++...
T Consensus 178 ~~ll~~T~------~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 178 PYLLVITA------KGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SEEEEEET------TSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred CEEEEEeC------CCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 45544432 67777666532 1122223 22334444433334456777788888887 87654
No 366
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=71.33 E-value=46 Score=28.07 Aligned_cols=150 Identities=12% Similarity=0.132 Sum_probs=83.7
Q ss_pred ccCCCccEEEEEeCCeEEEEECCCC-c--------eeeeeeecC-CCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc
Q 040533 51 MDWGRNNILAIALGLELYLWKQENG-E--------VQKLLKVTG-EDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 51 ~~~~~~~~~~~~~~~~i~iw~~~~~-~--------~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 120 (364)
++-.....++...+|.|+.|-.... + ......+.. ....+..++.+.-....++-..||.|..|-.....
T Consensus 58 i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~G 137 (389)
T 3kci_A 58 LIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDG 137 (389)
T ss_dssp EEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGG
T ss_pred EEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCC
Confidence 3333345777888999999975421 1 011111111 12234556676666666677789999999653211
Q ss_pred -----------eeeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce----------eeeee-cccCcEE
Q 040533 121 -----------LIRNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV----------TSRIN-AHTAEVC 177 (364)
Q Consensus 121 -----------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----------~~~~~-~~~~~v~ 177 (364)
....+.. ....|..++. .....+.-..+|.|+.|-.....++ ..... .....|.
T Consensus 138 qLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~ 214 (389)
T 3kci_A 138 KLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVV 214 (389)
T ss_dssp TTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred cCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEE
Confidence 1111221 1235666665 5666677778999999975432110 11111 1224566
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 178 GLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 178 ~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.++......+.+.-..||.|+.|-..
T Consensus 215 ~ia~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 215 DIACGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp EEEECCSSCEEEEEETTTEEEEEECC
T ss_pred EEEEcCCCcEEEEEccCCEEEEEeCC
Confidence 77665433566667789999999643
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=70.27 E-value=44 Score=27.48 Aligned_cols=231 Identities=9% Similarity=0.033 Sum_probs=118.2
Q ss_pred CEEEEEecCCcEEEEecCCcc---------eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEE---cccCc----
Q 040533 100 KTLAVGYMASKLQLWDAETSK---------LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHD---VRVSN---- 163 (364)
Q Consensus 100 ~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d---~~~~~---- 163 (364)
..+++.+.+|.|+--.+.+.+ .-..++ ....+..+.... +.+.|+.-+..|.++... +....
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~-t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCS-THDLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeC-CCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 456777788888766543211 111122 223344444444 566677677777766544 32221
Q ss_pred -cee-eeee-cccCcEEEE-EEcC--CCCEEEEEeCCCeEEEEeCCCCCCC----cceEEecccccceeEEEEccCCCcE
Q 040533 164 -NVT-SRIN-AHTAEVCGL-KWSN--EGNLLASGGDDNLVHVWDHSKMSSS----KCLHRFRDHRAAVKALAWCPYQFNV 233 (364)
Q Consensus 164 -~~~-~~~~-~~~~~v~~~-~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~ 233 (364)
..+ ..+. .....|..+ ...+ +..+++..+.+|.++-..+...... .....+.. .+.+..+........+
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~i 160 (327)
T 3uc1_A 82 GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDL 160 (327)
T ss_dssp CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEE
T ss_pred CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEE
Confidence 000 0111 123445554 3332 4679999999999998876543221 11222333 3444444444444455
Q ss_pred EEeecCCCCCeEEEEECC--C---------CeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc-
Q 040533 234 LASGGGTQDGCIKIWNVQ--K---------GTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT- 301 (364)
Q Consensus 234 ~~~~~g~~d~~i~i~d~~--~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~- 301 (364)
++.. ..|.+..+... . |...-.+.....|.++...+++.+++..+. .|.++.-.+....
T Consensus 161 ll~T---~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~------~G~~Krt~l~e~~~ 231 (327)
T 3uc1_A 161 LLVS---ANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATS------GGYAKRTAIEEYPV 231 (327)
T ss_dssp EEEE---TTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEET------TSEEEEEEGGGSCB
T ss_pred EEEE---CCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeC------CCcEEEEEHHHccc
Confidence 5544 58888888776 2 111112233455776666555555555433 7777776653221
Q ss_pred ------eeee--ccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 302 ------KWGE--LQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 302 ------~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
-+.. +....+.+..+....+...++..+.+|.+.-++...-
T Consensus 232 ~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 232 QGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp CCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGS
T ss_pred cCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhc
Confidence 1111 2221233444444344456777778888877776543
No 368
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=68.15 E-value=56 Score=27.85 Aligned_cols=268 Identities=11% Similarity=0.044 Sum_probs=130.1
Q ss_pred ccCCCccEEEEEeCCeEEEEECCC-Cc---------eeeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEecCCcc
Q 040533 51 MDWGRNNILAIALGLELYLWKQEN-GE---------VQKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDAETSK 120 (364)
Q Consensus 51 ~~~~~~~~~~~~~~~~i~iw~~~~-~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 120 (364)
++......++...+|.|+.|=... ++ ......+ ..-..|..++.. +...++-..||.|..|-....-
T Consensus 29 ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v-~~l~~v~~va~G--~~h~~~l~~~G~v~~wG~n~~G 105 (423)
T 3mvd_K 29 IAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPV-AGIPDAVDISAG--GMHNLVLTKSGDIYSFGCNDEG 105 (423)
T ss_dssp CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEEC-CSCSSEEEEEEC--SSEEEEEETTSCEEEEECCSSS
T ss_pred EecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEc-cCCCCceEEeeC--CCeEEEEeCCCeEEEeECCCCc
Confidence 444444455666778888885432 11 1111111 122346555543 4455566689999999653311
Q ss_pred e-------------eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEc--ccCcce---------eeeeecccCcE
Q 040533 121 L-------------IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDV--RVSNNV---------TSRINAHTAEV 176 (364)
Q Consensus 121 ~-------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~--~~~~~~---------~~~~~~~~~~v 176 (364)
. ...+. ....|..++. .....+.-..||.|+.|-. ....++ ..........|
T Consensus 106 qLG~~~~~~~~~~~P~~v~-~~~~i~~va~---G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i 181 (423)
T 3mvd_K 106 ALGRDTSEDGSESKPDLID-LPGKALCISA---GDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVC 181 (423)
T ss_dssp TTCSCCCSTTSSSSCEECC-CSSCEEEEEE---CSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCE
T ss_pred CCCCCCcCCccccCCeEEc-CCCCEEEEEc---CcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcE
Confidence 1 11111 2345666655 5566666788999999985 222111 00111123456
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--------------------CcceEEecccccceeEEEEccCCCcEEEe
Q 040533 177 CGLKWSNEGNLLASGGDDNLVHVWDHSKMSS--------------------SKCLHRFRDHRAAVKALAWCPYQFNVLAS 236 (364)
Q Consensus 177 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 236 (364)
..++... .+.+.-..+|.|+.|=...... ..+..........|..++.... ..++.
T Consensus 182 ~~va~G~--~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~--~~~~~ 257 (423)
T 3mvd_K 182 CSIASGA--DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNY--CTFMR 257 (423)
T ss_dssp EEEEECS--SEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETT--EEEEE
T ss_pred EEEecCC--CeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCc--EEEEE
Confidence 6666543 3555566889999996432110 0111111111234455544322 22332
Q ss_pred ecCCCCCeEEEEECCC-----------CeEEEEEe-cCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc---
Q 040533 237 GGGTQDGCIKIWNVQK-----------GTCIHSVD-TKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT--- 301 (364)
Q Consensus 237 ~~g~~d~~i~i~d~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~--- 301 (364)
-. .++.|..|-... ........ ....|..++-......+++ .+|.|+.|=.....
T Consensus 258 ~~--~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt--------~~G~v~~wG~n~~GqLG 327 (423)
T 3mvd_K 258 ES--QTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILT--------TDLKCSVVGRPEYGRLG 327 (423)
T ss_dssp ET--TTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEEE--------TTCCEEEEECCGGGTTC
T ss_pred EC--CCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEEe--------CCCcEEEEECCCCCCCC
Confidence 12 578888885432 11111111 1234555554443333332 27888888643211
Q ss_pred ---------eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 302 ---------KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 302 ---------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
....+..-...|..|+... ..-+.-..||.|+.|=...
T Consensus 328 ~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 328 LGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp SSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEEECCT
T ss_pred CCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEECCCC
Confidence 1111222222566666543 3444457889999997654
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=67.07 E-value=19 Score=32.57 Aligned_cols=64 Identities=16% Similarity=0.074 Sum_probs=43.6
Q ss_pred eEEEEEcCCccceeeeccCCc------cCCCCeEEEeeCCCCceeeecccc-ccceeEEeecCCCCEEEEE
Q 040533 265 ICGLEWNRHHKEILSGHGFSS------SGDGQKLCLWKYPHMTKWGELQHQ-TSRILELSQSPDGLTVVSA 328 (364)
Q Consensus 265 v~~~~~~~~~~~l~~~~~~~~------~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~ 328 (364)
.-.|+|+|.|.++++..+-.. .-..+.+.+.+..+++...-+..+ ..+++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 456899999997776542100 011345677777777766555543 4689999999999988775
No 370
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=66.44 E-value=66 Score=28.02 Aligned_cols=107 Identities=13% Similarity=0.100 Sum_probs=58.3
Q ss_pred CcEEEEEeecCCCC-EEEEeeCCCcEEEEEcccCc--ceeeee----e-----cccCcEEEEEEcCC----CCEEEEEeC
Q 040533 130 KRVATASWNHWNGH-ILTSGSQDKSIINHDVRVSN--NVTSRI----N-----AHTAEVCGLKWSNE----GNLLASGGD 193 (364)
Q Consensus 130 ~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~--~~~~~~----~-----~~~~~v~~~~~~~~----~~~l~~~~~ 193 (364)
..-+.|+|.| ++. .|+++...|.|++++..... ..+..+ . ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~p-dG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSG-DGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCS-SSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECC-CCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 3457899999 775 45566788999999754221 111111 1 11456789999996 333333221
Q ss_pred --C----------CeEEEEeCCCCC-------CCcceEEec--ccccceeEEEEccCCCcEEEee
Q 040533 194 --D----------NLVHVWDHSKMS-------SSKCLHRFR--DHRAAVKALAWCPYQFNVLASG 237 (364)
Q Consensus 194 --d----------~~i~iwd~~~~~-------~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~ 237 (364)
+ ..|.-|.+.... ..+.+..+. .....-..|+|.||+..++.+|
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence 1 144456654311 112233322 1223457899999995555554
No 371
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=61.84 E-value=33 Score=30.81 Aligned_cols=62 Identities=10% Similarity=0.149 Sum_probs=43.0
Q ss_pred ceeEEEEccCCCcEEEeecCC---------CCCeEEEEECCCCeEEEEEec--CCCeEEEEEcCCccceeeec
Q 040533 220 AVKALAWCPYQFNVLASGGGT---------QDGCIKIWNVQKGTCIHSVDT--KAQICGLEWNRHHKEILSGH 281 (364)
Q Consensus 220 ~v~~~~~~~~~~~~~~~~~g~---------~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~ 281 (364)
....|.|+++|...+.+-.+. ....+..++..+++....+.. ...++.++|+|+++.|++..
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 356799999985555453210 122677778878887666653 36799999999999988764
No 372
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=61.74 E-value=63 Score=26.22 Aligned_cols=234 Identities=8% Similarity=-0.007 Sum_probs=116.2
Q ss_pred CCCCEEEEEecCCcEEEEecCCcceee---------eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc---cCc-
Q 040533 97 QDAKTLAVGYMASKLQLWDAETSKLIR---------NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR---VSN- 163 (364)
Q Consensus 97 ~~~~~l~~~~~dg~i~iw~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~~- 163 (364)
|+...+++.+.+|.|+--.+.+.+..+ .+... ..+..+.... +.+.|+..+..|.++-+... ...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCC
Confidence 355678888889988877665422211 12222 3343443444 56667777788876665542 111
Q ss_pred -----ceeeeee-cccCcEEEEEEc---CCCCEEEEEeCCCeEEEEeCCCCCC----CcceEEecccccceeEEEEccCC
Q 040533 164 -----NVTSRIN-AHTAEVCGLKWS---NEGNLLASGGDDNLVHVWDHSKMSS----SKCLHRFRDHRAAVKALAWCPYQ 230 (364)
Q Consensus 164 -----~~~~~~~-~~~~~v~~~~~~---~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~ 230 (364)
+....+. .....|.++..- .++.+++..+..|.++-..+..... +.....+... +.+..+......
T Consensus 79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 1001111 223445555432 3456788899999999887643221 1112223333 445444444333
Q ss_pred CcEEEeecCCCCCeEEEEECCC---------CeEEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCc
Q 040533 231 FNVLASGGGTQDGCIKIWNVQK---------GTCIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMT 301 (364)
Q Consensus 231 ~~~~~~~~g~~d~~i~i~d~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~ 301 (364)
..+++.. .+|.+..++... |...-.+.....+.++...+++..++..+. .|.++-.++....
T Consensus 158 ~~i~l~T---~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~------~G~~Kr~~~~e~~ 228 (307)
T 1zi0_A 158 DEVMLFS---AEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQ------NGYGKRTAVAEYP 228 (307)
T ss_dssp CEEEEEE---TTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEET------TSEEEEECGGGSC
T ss_pred CEEEEEC---CCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEc------CCceEEEEHHHhc
Confidence 3455443 578887777632 111112233455666655544444444432 6777766652211
Q ss_pred ---------eeeeccccccceeEEeecCCCCEEEEEeCCCcEEEEEeeCC
Q 040533 302 ---------KWGELQHQTSRILELSQSPDGLTVVSAAADETLRFWEAFGP 342 (364)
Q Consensus 302 ---------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~~ 342 (364)
....+....+.+-.+....+...++..+.+|.+.-+++..-
T Consensus 229 ~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 229 TKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp CCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred cCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 11122222244444443334455666777888777776553
No 373
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=61.29 E-value=1e+02 Score=28.58 Aligned_cols=223 Identities=13% Similarity=0.100 Sum_probs=109.8
Q ss_pred eEEEEECCCCceeeeeeecCCCC------CceEEEEcCCCCEEEEEe-----------cCCcEEEEecCCcc--eeeeee
Q 040533 66 ELYLWKQENGEVQKLLKVTGEDD------FPTSISWSQDAKTLAVGY-----------MASKLQLWDAETSK--LIRNLE 126 (364)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~-----------~dg~i~iw~~~~~~--~~~~~~ 126 (364)
.++++|+.+++...-.-...-+. ....++|. |.+-+..+. ....|+.|.+-+.. -...+.
T Consensus 157 ~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~ 235 (711)
T 4hvt_A 157 FFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFE 235 (711)
T ss_dssp EEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEE
T ss_pred EEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEec
Confidence 89999999998643110001011 11344776 334444432 12458888775542 223344
Q ss_pred cCCCcEE-EEEeecCCCC-----EEEEeeCC---CcEEEEEcccCcceeeeeecccCcEEEEEEcCCCCEEEEE------
Q 040533 127 GHDKRVA-TASWNHWNGH-----ILTSGSQD---KSIINHDVRVSNNVTSRINAHTAEVCGLKWSNEGNLLASG------ 191 (364)
Q Consensus 127 ~~~~~v~-~~~~~~~~~~-----~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------ 191 (364)
+....+. ....++ ++. .+++.+.+ ..+.+.+..........+...... .+..+.++.+++..
T Consensus 236 ~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~ 312 (711)
T 4hvt_A 236 VPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA--TLQGSFKEYVFWLLRSDWKF 312 (711)
T ss_dssp CCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC--EEEEEETTEEEEECSSCEEE
T ss_pred cCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc--eEeeeECCEEEEEECccccc
Confidence 3333332 333444 444 24443322 345555654322212222222221 12234455544422
Q ss_pred ----eCCCeEEEEeCCCCCCC----cceEE-ec-ccccceeEEEEccCCCcEEEeecCCCCC--eEEEEECCCCe-EEEE
Q 040533 192 ----GDDNLVHVWDHSKMSSS----KCLHR-FR-DHRAAVKALAWCPYQFNVLASGGGTQDG--CIKIWNVQKGT-CIHS 258 (364)
Q Consensus 192 ----~~d~~i~iwd~~~~~~~----~~~~~-~~-~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~-~~~~ 258 (364)
...+.|...|+...... ..... +. .....+..+.|..+ .++++.. .++ .+.++|+.+++ ....
T Consensus 313 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~l~~~~~--~~~~~~l~~~~~~~g~~~~~~ 388 (711)
T 4hvt_A 313 KSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD--RVFLATY--DNVVAKVVTFTLENEQWTKPV 388 (711)
T ss_dssp TTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS--CEEEEEE--ETTEEEEEEECEETTEECCCE
T ss_pred ccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC--EEEEEEE--ECCEEEEEEEECCCCceEEEe
Confidence 24567888988764211 11222 22 23345778888875 5666654 454 57778776664 2233
Q ss_pred -Eec--CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCC
Q 040533 259 -VDT--KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYP 298 (364)
Q Consensus 259 -~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~ 298 (364)
+.. .+.+.....++++..++.... +...-..+..+|+.
T Consensus 389 ~i~lp~~~~~~~~~~~~~~~~~~~~~s--s~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 389 VLKLPYQNAIFGMSSYEEEEEALITIE--NSIVPPTIYLWVKT 429 (711)
T ss_dssp EECCCSTTCEEEEECCTTCSCEEEEEE--CSSSCCEEEEECTT
T ss_pred ccCCCCCeEEEEEeecCcCCEEEEEEe--cCCCCCEEEEEeCC
Confidence 333 345666777777766554422 12346778888876
No 374
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=59.29 E-value=70 Score=25.95 Aligned_cols=145 Identities=10% Similarity=0.057 Sum_probs=86.1
Q ss_pred CccEEEEEeCCeEEEEECCC---C------ce-eeeeeecCCCCCceEEEEc---CCCCEEEEEecCCcEEEEecCCcc-
Q 040533 55 RNNILAIALGLELYLWKQEN---G------EV-QKLLKVTGEDDFPTSISWS---QDAKTLAVGYMASKLQLWDAETSK- 120 (364)
Q Consensus 55 ~~~~~~~~~~~~i~iw~~~~---~------~~-~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg~i~iw~~~~~~- 120 (364)
.+.++..+..|.++-+.... . .. .....+ ...+.|.++..- .++.+++..+.+|.++--.+..-.
T Consensus 53 ~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~ 131 (307)
T 1zi0_A 53 HDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 131 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTT
T ss_pred CCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhc
Confidence 35688888888877776431 1 11 012233 234456665442 355678889999999998765321
Q ss_pred ------eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc-------e-eeeeecccCcEEEEEEcCCCC
Q 040533 121 ------LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN-------V-TSRINAHTAEVCGLKWSNEGN 186 (364)
Q Consensus 121 ------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-------~-~~~~~~~~~~v~~~~~~~~~~ 186 (364)
....+..+ ..+..+.... +.+.++..+.+|.+..+....-.. . ...+ .....|.++...+++.
T Consensus 132 ~~r~G~~~i~l~~~-d~lv~~~~~~-~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~ 208 (307)
T 1zi0_A 132 LRTAGKVAIKLVDG-DELIGVDLTS-GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL-GEGDKVVSLIVPRGDG 208 (307)
T ss_dssp CCTTCEESSCCCTT-CCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEECCCSSC
T ss_pred cccCCeEEEEECCC-CEEEEEEEeC-CCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe-CCCCEEEEEEEecCCC
Confidence 22223333 4555555544 556777888889888887643211 0 0112 1235566665555556
Q ss_pred EEEEEeCCCeEEEEeCC
Q 040533 187 LLASGGDDNLVHVWDHS 203 (364)
Q Consensus 187 ~l~~~~~d~~i~iwd~~ 203 (364)
.+++.+..|.++-.++.
T Consensus 209 ~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 209 AILTATQNGYGKRTAVA 225 (307)
T ss_dssp EEEEEETTSEEEEECGG
T ss_pred EEEEEEcCCceEEEEHH
Confidence 78888899998888763
No 375
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=58.20 E-value=83 Score=26.42 Aligned_cols=151 Identities=9% Similarity=-0.004 Sum_probs=82.1
Q ss_pred EcCCCCEEEEEecCCcEEEEecCC---------cceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc---cC
Q 040533 95 WSQDAKTLAVGYMASKLQLWDAET---------SKLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR---VS 162 (364)
Q Consensus 95 ~s~~~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~ 162 (364)
+-|+..++++.+.+|.|+--.+.+ +.....++ ....+..+.... +.+.|+..+..|.++.+... ..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCC
Confidence 346778999999999998765432 11222333 244555555554 56667777788877665542 11
Q ss_pred c------ceeeeee-cccCcEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCCC----CcceEEecccccceeEEEEcc
Q 040533 163 N------NVTSRIN-AHTAEVCGLKWSN---EGNLLASGGDDNLVHVWDHSKMSS----SKCLHRFRDHRAAVKALAWCP 228 (364)
Q Consensus 163 ~------~~~~~~~-~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~ 228 (364)
. .....+. .....|.++..-. ++.+|+.++..|.++...+..... +.....+.. .+.+..+....
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~ 159 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD 159 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence 1 1111111 1234555544322 356899999999999887643221 111222332 33444444433
Q ss_pred CCCcEEEeecCCCCCeEEEEECC
Q 040533 229 YQFNVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 229 ~~~~~~~~~~g~~d~~i~i~d~~ 251 (364)
....+++.. .+|.+..++..
T Consensus 160 ~~~~i~l~T---~~G~~irf~~~ 179 (370)
T 3l6v_A 160 GDRDVLLFA---SNGKTVRFGES 179 (370)
T ss_dssp SCCEEEEEE---TTSEEEEEEGG
T ss_pred CCceEEEEe---CCCeEEEEEcc
Confidence 333454443 57877777653
No 376
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.19 E-value=23 Score=35.05 Aligned_cols=38 Identities=8% Similarity=0.259 Sum_probs=28.1
Q ss_pred eeEEEEccCCCcEEEeecCCCCCeEEEEECCCCeEEEEEec
Q 040533 221 VKALAWCPYQFNVLASGGGTQDGCIKIWNVQKGTCIHSVDT 261 (364)
Q Consensus 221 v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 261 (364)
+.+++..++..++++.+ .|+++|+|++.+++++.+.+.
T Consensus 240 ~vs~~~~~~~~~lftL~---~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLS---LDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp BSCCEEETTTTEEEEEB---TTCEEEEEETTTTEEEEEEEC
T ss_pred eEEeeccCCccEEEEEe---CCCEEEEEECCCCCeEEeech
Confidence 44555556665555544 799999999999999988753
No 377
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=57.74 E-value=76 Score=25.83 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=87.4
Q ss_pred ccEEEEEeCCeEEEEECCCCce----------eeeeeecCCCCCceEEEEcC---CCCEEEEEecCCcEEEEecCCc---
Q 040533 56 NNILAIALGLELYLWKQENGEV----------QKLLKVTGEDDFPTSISWSQ---DAKTLAVGYMASKLQLWDAETS--- 119 (364)
Q Consensus 56 ~~~~~~~~~~~i~iw~~~~~~~----------~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~--- 119 (364)
+.++..+..|.++-+....-.. ...+.+. ..+.|.++...+ +..+|+..+.+|.++.-.+..-
T Consensus 59 ~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~ 137 (312)
T 1suu_A 59 DYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV 137 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-
T ss_pred CEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc
Confidence 5688888888887776542110 1122232 234555554332 4567888899999998887432
Q ss_pred ----ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc--------eeeeeecccCcEEEEEEcCCCCE
Q 040533 120 ----KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNN--------VTSRINAHTAEVCGLKWSNEGNL 187 (364)
Q Consensus 120 ----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~ 187 (364)
.....+.. ...+..+.... .++.++..+.+|.+..+....-.. ....+. ....|..+..-.++..
T Consensus 138 r~~G~~~i~L~~-~d~lv~~~~~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~ 214 (312)
T 1suu_A 138 KSRGVIVIKLND-KDFVTSAEIVF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPY 214 (312)
T ss_dssp ---CEECBCCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSE
T ss_pred CCCcEEEEecCC-CCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCe
Confidence 22223343 45565555554 566788889999999888754111 011121 2345666655555667
Q ss_pred EEEEeCCCeEEEEeCCC
Q 040533 188 LASGGDDNLVHVWDHSK 204 (364)
Q Consensus 188 l~~~~~d~~i~iwd~~~ 204 (364)
+++.+..|..+..++..
T Consensus 215 l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 215 LLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEETTSEEEEEEGGG
T ss_pred EEEEECCCceEEEEHHH
Confidence 88888999988888643
No 378
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=57.54 E-value=41 Score=30.41 Aligned_cols=58 Identities=16% Similarity=0.266 Sum_probs=37.5
Q ss_pred EEEEEeecCCCCEEEEeeCC------------CcEEEEEcccCcceeeeeec-ccCcEEEEEEcCCCCEEEEE
Q 040533 132 VATASWNHWNGHILTSGSQD------------KSIINHDVRVSNNVTSRINA-HTAEVCGLKWSNEGNLLASG 191 (364)
Q Consensus 132 v~~~~~~~~~~~~l~~~~~d------------g~i~~~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 191 (364)
.-.|+|+| .++++++-..+ ..+.+.+..+++ +...+.. ....++.++|+||++.|++.
T Consensus 478 PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~-~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGE-IRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCC-EEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCe-EEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45688999 88877665432 234555555444 2333333 34689999999999877765
No 379
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=52.38 E-value=1.1e+02 Score=25.98 Aligned_cols=230 Identities=7% Similarity=0.037 Sum_probs=114.8
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCC-ce----------eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENG-EV----------QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA 116 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~-~~----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 116 (364)
+..++-.....++...+|.|+.|-.... ++ .....+ .-...|..++.. ....++-..+|.|..|-.
T Consensus 61 i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G--~~hs~alt~~G~v~~wG~ 137 (413)
T 1a12_A 61 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAG--DSHTAALTDDGRVFLWGS 137 (413)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEEC--SSEEEEEETTSCEEEEEC
T ss_pred eEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecC--CCeEEEEcCCCcEEEeeC
Confidence 4444444556788888999999975431 11 000011 112356655543 334455567899999974
Q ss_pred --CC-cce-----------eeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCccee----------------
Q 040533 117 --ET-SKL-----------IRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVT---------------- 166 (364)
Q Consensus 117 --~~-~~~-----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~---------------- 166 (364)
.. +++ ...+ .....|..++. .....+.-..+|.|+.|-.....++-
T Consensus 138 ~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 213 (413)
T 1a12_A 138 FRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVAS---GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLE 213 (413)
T ss_dssp EEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHH
T ss_pred CcCCCCccCcCCccccccCCEEe-cCCCCEEEEEe---cCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccc
Confidence 21 111 1111 12345666655 55666667789999999764322110
Q ss_pred -----eeeec------ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC-C----cce---EEeccc---ccceeEE
Q 040533 167 -----SRINA------HTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS-S----KCL---HRFRDH---RAAVKAL 224 (364)
Q Consensus 167 -----~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~----~~~---~~~~~~---~~~v~~~ 224 (364)
..... ....|..++.... +.+.-..+|.|+.|=...... . ... ..+... ...|..+
T Consensus 214 ~~~~P~~v~~~~~g~~~~~~i~~ia~G~~--hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~i 291 (413)
T 1a12_A 214 RLLVPKCVMLKSRGSRGHVRFQDAFCGAY--FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGF 291 (413)
T ss_dssp HHHSCEECCCBCSSCCSBCCEEEEEEETT--EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEE
T ss_pred ccccCceEeeccccccCCccEEEEEeCCC--EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEE
Confidence 00000 2245666665443 444455789999996543211 0 000 011111 1235555
Q ss_pred EEccCCCcEEEeecCCCCCeEEEEECCC------C---e---EEEEEecCCCeEEEEEcCCccceeeeccCCccCCCCeE
Q 040533 225 AWCPYQFNVLASGGGTQDGCIKIWNVQK------G---T---CIHSVDTKAQICGLEWNRHHKEILSGHGFSSSGDGQKL 292 (364)
Q Consensus 225 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~------~---~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i 292 (364)
+--.. +.++.. .||.|+.|=... + . ....+..-..|..++.......+++ .++.|
T Consensus 292 a~G~~--hs~al~---~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~hs~alt--------~~G~v 358 (413)
T 1a12_A 292 SGGQH--HTVCMD---SEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVT--------KDGRV 358 (413)
T ss_dssp EECSS--EEEEEE---TTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEE--------TTSCE
T ss_pred ecccc--eEEEEe---CCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcceEEEEe--------CCCCE
Confidence 54433 333332 588999996432 1 0 1111222235666655443333332 28889
Q ss_pred EEeeCCC
Q 040533 293 CLWKYPH 299 (364)
Q Consensus 293 ~i~d~~~ 299 (364)
+.|=...
T Consensus 359 ~~wG~n~ 365 (413)
T 1a12_A 359 FAWGMGT 365 (413)
T ss_dssp EEEECCT
T ss_pred EEecCCC
Confidence 9887654
No 380
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=49.22 E-value=1.1e+02 Score=25.09 Aligned_cols=147 Identities=8% Similarity=0.011 Sum_probs=84.6
Q ss_pred CccEEEEEeCCeEEEEECCC---------Cce-eeeeeecCCCCCceEEE-EcC--CCCEEEEEecCCcEEEEecCCcc-
Q 040533 55 RNNILAIALGLELYLWKQEN---------GEV-QKLLKVTGEDDFPTSIS-WSQ--DAKTLAVGYMASKLQLWDAETSK- 120 (364)
Q Consensus 55 ~~~~~~~~~~~~i~iw~~~~---------~~~-~~~~~~~~~~~~v~~~~-~s~--~~~~l~~~~~dg~i~iw~~~~~~- 120 (364)
.+.++..+..|.++-+.... |.. .....+. ..+.|.++. ..+ ++.+++.++.+|.++--.+..-.
T Consensus 50 ~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~ 128 (323)
T 1wp5_A 50 KDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKA 128 (323)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCC
T ss_pred CCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhh
Confidence 35688888888877766431 111 1122232 234566543 332 25678899999999998875322
Q ss_pred -------eeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce------eeeee-cccCcEEEEEEcCCCC
Q 040533 121 -------LIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV------TSRIN-AHTAEVCGLKWSNEGN 186 (364)
Q Consensus 121 -------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------~~~~~-~~~~~v~~~~~~~~~~ 186 (364)
....+... ..+..+.... ..+.++..+.+|.+..+....-... ...+. .....|.++..-+++.
T Consensus 129 ~~r~~G~~ai~l~e~-d~lv~~~~~~-~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~ 206 (323)
T 1wp5_A 129 QRYSKPLTGINLKND-DQVVDVHLTD-GMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKD 206 (323)
T ss_dssp SCCSSCEECSCCCTT-CCEEEEEEEC-SCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTT
T ss_pred ccccCceEEEEeCCC-CEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCC
Confidence 12223322 4555555544 5667888888999888876532110 11111 1234566665444444
Q ss_pred -EEEEEeCCCeEEEEeCCC
Q 040533 187 -LLASGGDDNLVHVWDHSK 204 (364)
Q Consensus 187 -~l~~~~~d~~i~iwd~~~ 204 (364)
.+++.+..|..+..++..
T Consensus 207 ~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 207 ESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp CEEEEEETTSEEEEEEGGG
T ss_pred cEEEEEECCCceEEEEHHH
Confidence 788888888888777643
No 381
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=44.69 E-value=2.1e+02 Score=27.00 Aligned_cols=62 Identities=6% Similarity=-0.036 Sum_probs=38.4
Q ss_pred CCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcceeeeeec-------ccCcEEEEEEcCC-CCEEEEEe
Q 040533 129 DKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNVTSRINA-------HTAEVCGLKWSNE-GNLLASGG 192 (364)
Q Consensus 129 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~-~~~l~~~~ 192 (364)
...|.+|+++|.+...++++...+.|...+= .++. ...+.. ....+.++++.|. ...++.+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~t-W~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSK-WIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTE-EEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCC-eeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 4689999999966778888887777655441 2222 222222 1246999999984 33444443
No 382
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=43.73 E-value=1.5e+02 Score=25.08 Aligned_cols=272 Identities=10% Similarity=0.153 Sum_probs=132.5
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCC-ce--------eeeeeecC-CCCCceEEEEcCCCCEEEEEecC-CcEEEEec
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENG-EV--------QKLLKVTG-EDDFPTSISWSQDAKTLAVGYMA-SKLQLWDA 116 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~-~~--------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d-g~i~iw~~ 116 (364)
+..++-.....++...++.|+.|-.... ++ .....+.. ....|..++... ...++-..+ +.|+.|-.
T Consensus 18 v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~--~ht~al~~~gg~v~~wG~ 95 (406)
T 4d9s_A 18 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA--DHTVAYSQSGMEVYSWGW 95 (406)
T ss_dssp EEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECS--SEEEEEETTTTEEEEEEC
T ss_pred eEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCc--ceEEEEECCCCEEEEEcC
Confidence 4445555566788888999999975431 10 11111111 123566666543 233333344 58999964
Q ss_pred CCcce-----------eeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce----------eeeeec-cc
Q 040533 117 ETSKL-----------IRNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV----------TSRINA-HT 173 (364)
Q Consensus 117 ~~~~~-----------~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----------~~~~~~-~~ 173 (364)
...-. ...+.. ....|..++. .....+.-..+|.|+.|-.....++ ...+.. ..
T Consensus 96 n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~---G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 172 (406)
T 4d9s_A 96 GDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC---GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG 172 (406)
T ss_dssp CGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTT
T ss_pred CCCcCCCCCCCCccccceEecccCCCCEEEEEE---ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCC
Confidence 32110 111111 2235666665 5566667788999999975433211 111111 12
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC------C-cce-EEec-ccccceeEEEEccCCCcEEEeecCCCCCe
Q 040533 174 AEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS------S-KCL-HRFR-DHRAAVKALAWCPYQFNVLASGGGTQDGC 244 (364)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~-~~~-~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 244 (364)
..|..++... .+.+.-..+|.|+.|-...... . ... ..+. .....|..++.... +.++.. .+|.
T Consensus 173 ~~i~~va~G~--~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~--ht~~l~---~~G~ 245 (406)
T 4d9s_A 173 IRIKMVAAGA--EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR--HTISVS---YSGA 245 (406)
T ss_dssp CCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSS--EEEEEE---TTCC
T ss_pred CcEEEEecCC--CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCC--cEEEEc---CCCC
Confidence 3566666543 3555567899999996432111 0 000 0111 11234555554332 233322 5888
Q ss_pred EEEEECCCC----------eE-EEEEec--CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCCceee-------
Q 040533 245 IKIWNVQKG----------TC-IHSVDT--KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHMTKWG------- 304 (364)
Q Consensus 245 i~i~d~~~~----------~~-~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~~~~~------- 304 (364)
|+.|=.... .. ...+.. ...|..++-......+++ .++.|+.|=.....++.
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt--------~~G~v~~wG~n~~GqLG~g~~~~~ 317 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALT--------SDGKLYGWGWNKFGQVGVGNNLDQ 317 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEE--------TTSCEEEEECCTTSTTCSSSSSCE
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEc--------CCCeEEEeeCCCCCCCCCCCCCCC
Confidence 888864321 01 111111 123555554433333332 27888888654321110
Q ss_pred ----ecc-ccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 305 ----ELQ-HQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 305 ----~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
.+. .....|..++. .....++-..||.|+.|=...
T Consensus 318 ~~p~~v~~~~~~~v~~va~--G~~hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 318 CSPVQVRFPDDQKVVQVSC--GWRHTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp EEEEEECCGGGCCEEEEEE--CSSEEEEEETTSCEEEEECCT
T ss_pred ccCEEEeccCCCcEEEEEe--CCCeEEEEeCCCCEEEecCCC
Confidence 111 11234555554 334555567889999997554
No 383
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=41.89 E-value=1.4e+02 Score=24.37 Aligned_cols=233 Identities=7% Similarity=-0.005 Sum_probs=116.8
Q ss_pred CCCCEEEEEecCCcEEEEecCCc----ceeeeeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcc---cCc------
Q 040533 97 QDAKTLAVGYMASKLQLWDAETS----KLIRNLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVR---VSN------ 163 (364)
Q Consensus 97 ~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~~------ 163 (364)
|+...+++.+.+|.|+--.+.+. .....+... ..+..+.... +.+.|+..+..|.++-+... ...
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 56677888889999887765422 111123333 3344444444 66677777888887665542 111
Q ss_pred ceeeeee-cccCcEEEE-EEcC--CCCEEEEEeCCCeEEEEeCCCCCC-----CcceEEecccccceeEEEEccCCCcEE
Q 040533 164 NVTSRIN-AHTAEVCGL-KWSN--EGNLLASGGDDNLVHVWDHSKMSS-----SKCLHRFRDHRAAVKALAWCPYQFNVL 234 (364)
Q Consensus 164 ~~~~~~~-~~~~~v~~~-~~~~--~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~ 234 (364)
++...+. .....|.++ ...+ ++.+++..+..|.++-..+..... +.....+... +.+..+........++
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence 1111111 122345554 3332 256788999999999887643221 1112223322 4454544443333455
Q ss_pred EeecCCCCCeEEEEECCC-------CeEEEE--EecCCCeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCC-----
Q 040533 235 ASGGGTQDGCIKIWNVQK-------GTCIHS--VDTKAQICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPH----- 299 (364)
Q Consensus 235 ~~~~g~~d~~i~i~d~~~-------~~~~~~--~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~----- 299 (364)
+.. .+|.+..++... .+-++. +.....+.++...+++. .++..+. .|..+..++..
T Consensus 160 l~T---~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~------~G~gKr~~~~e~~~~~ 230 (323)
T 1wp5_A 160 LVT---HNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQ------RGAVKKMKLTEFEKAT 230 (323)
T ss_dssp EEE---TTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEET------TSEEEEEEGGGSCCCC
T ss_pred EEe---CCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEEC------CCceEEEEHHHccccC
Confidence 443 588888887642 111222 22334566664444333 3443322 66666655532
Q ss_pred --Cceeeec---cccccceeEEeecCCCCEEEEEeCCCcEEEEEeeC
Q 040533 300 --MTKWGEL---QHQTSRILELSQSPDGLTVVSAAADETLRFWEAFG 341 (364)
Q Consensus 300 --~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~dg~i~vw~~~~ 341 (364)
++-+..+ +.....+..+....++..++..+.+|.+....+..
T Consensus 231 Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 231 RAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp TTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred CCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 1111112 12222344333223344566777788877777655
No 384
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=38.01 E-value=1.8e+02 Score=24.38 Aligned_cols=109 Identities=10% Similarity=0.003 Sum_probs=58.7
Q ss_pred ecCCCCEEEEeeCCCcEEEEEcccCc-------ceeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEe---CCCCC-
Q 040533 138 NHWNGHILTSGSQDKSIINHDVRVSN-------NVTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWD---HSKMS- 206 (364)
Q Consensus 138 ~~~~~~~l~~~~~dg~i~~~d~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd---~~~~~- 206 (364)
-| +..++++.+.+|.|+--.+.... .....-......+..+........++..+..|.++-+. ++...
T Consensus 4 I~-~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IA-PEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CC-CCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cc-CCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 45 77899999999999987654321 11111112345565555555556677777888876654 33221
Q ss_pred --CCcceE---EecccccceeEEEEcc---CCCcEEEeecCCCCCeEEEEECC
Q 040533 207 --SSKCLH---RFRDHRAAVKALAWCP---YQFNVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 207 --~~~~~~---~~~~~~~~v~~~~~~~---~~~~~~~~~~g~~d~~i~i~d~~ 251 (364)
.+.++. .+. ....|.++..-+ .+.+++... ..|.++-..+.
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T---~~G~vKrt~l~ 131 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMAT---RNGTVKKTPLS 131 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEE---TTSEEEEEEGG
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEe---CCCeEEEeEHH
Confidence 111111 122 234455544322 222344432 68999888764
No 385
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=37.49 E-value=49 Score=30.62 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=25.2
Q ss_pred cEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcc
Q 040533 131 RVATASWNHWNGHILTSGSQDKSIINHDVRVSNN 164 (364)
Q Consensus 131 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 164 (364)
.|.++.+ +..++++-+.|.++|+|++.++..
T Consensus 223 ~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~l 253 (729)
T 3f7f_A 223 VISCKLF---HERYLIVLTQNCHLKIWDLTSFTL 253 (729)
T ss_dssp EEEEEEE---TTTEEEEEETTCEEEEEETTTTEE
T ss_pred eEEEecc---CCcEEEEEEcCCeEEEEEcCCCce
Confidence 4555555 678999999999999999998763
No 386
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=35.73 E-value=2e+02 Score=24.32 Aligned_cols=232 Identities=9% Similarity=0.032 Sum_probs=114.5
Q ss_pred ecccCCCccEEEEEeCCeEEEEECCCC-ce----------eeeeeecCCCCCceEEEEcCCCCEEEEEecCCcEEEEec-
Q 040533 49 NMMDWGRNNILAIALGLELYLWKQENG-EV----------QKLLKVTGEDDFPTSISWSQDAKTLAVGYMASKLQLWDA- 116 (364)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~i~iw~~~~~-~~----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~- 116 (364)
..++-.....++...+|.|+.|-.... ++ .....+ .....|..++.. ....++-..||.|+.|-.
T Consensus 78 ~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~~~~~i~~va~G--~~hs~al~~~G~v~~wG~~ 154 (423)
T 3mvd_K 78 VDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLI-DLPGKALCISAG--DSHSACLLEDGRVFAWGSF 154 (423)
T ss_dssp EEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEEC-CCSSCEEEEEEC--SSEEEEEETTSCEEEEECE
T ss_pred eEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEE-cCCCCEEEEEcC--cCeEEEEeCCCeEEEEeCC
Confidence 444445566788888999999975431 10 001111 112346555543 334445567899999975
Q ss_pred -CC-cce--------eeeee-cCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce--------------------
Q 040533 117 -ET-SKL--------IRNLE-GHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV-------------------- 165 (364)
Q Consensus 117 -~~-~~~--------~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-------------------- 165 (364)
.. +++ ..... .....|..++. .....+.-..+|.|+.|-.....++
T Consensus 155 ~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~ 231 (423)
T 3mvd_K 155 RDSHGNMGLTIDGNKRTPIDLMEGTVCCSIAS---GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLL 231 (423)
T ss_dssp ECSSSEEESBTTBCEEEEEESSTTCCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTS
T ss_pred CCCCCCcCcCCCCCCceeeEecCCCcEEEEec---CCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccccc
Confidence 22 211 00011 12345666665 5566677778999999975432211
Q ss_pred --eeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC--------CcceEEecccccceeEEEEccCCCcEEE
Q 040533 166 --TSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS--------SKCLHRFRDHRAAVKALAWCPYQFNVLA 235 (364)
Q Consensus 166 --~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 235 (364)
..........|..++.... ..++.-..++.|+.|-...... .............|..++.-.. +.++
T Consensus 232 ~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~--ht~a 308 (423)
T 3mvd_K 232 RPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQH--HTVI 308 (423)
T ss_dssp SCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSS--EEEE
T ss_pred CCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccC--eEEE
Confidence 1111112234555554322 2233335788898886432110 0001111111234556554433 2333
Q ss_pred eecCCCCCeEEEEECCCC---------e---EEEEEec-CCCeEEEEEcCCccceeeeccCCccCCCCeEEEeeCCCC
Q 040533 236 SGGGTQDGCIKIWNVQKG---------T---CIHSVDT-KAQICGLEWNRHHKEILSGHGFSSSGDGQKLCLWKYPHM 300 (364)
Q Consensus 236 ~~~g~~d~~i~i~d~~~~---------~---~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~d~~~~ 300 (364)
.. .||.|..|=.... . ....+.. ...|..++.......+++ .+|.|+.|=....
T Consensus 309 lt---~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt--------~~G~v~~wG~n~~ 375 (423)
T 3mvd_K 309 LT---TDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVT--------IDGKLYSWGSGVN 375 (423)
T ss_dssp EE---TTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEE--------TTSCEEEEECCTT
T ss_pred Ee---CCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEc--------CCCCEEEECCCCC
Confidence 32 5889999864321 1 1111111 124666665544443333 2889999976543
No 387
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=33.12 E-value=1.8e+02 Score=23.03 Aligned_cols=158 Identities=9% Similarity=-0.015 Sum_probs=86.2
Q ss_pred CCCceEEEEcCCCCEEEEEecCCcEEEEe---cCCcceeeeeecCCCcEEEEEeecC-CCCEEEEeeCCCcEEEEEcccC
Q 040533 87 DDFPTSISWSQDAKTLAVGYMASKLQLWD---AETSKLIRNLEGHDKRVATASWNHW-NGHILTSGSQDKSIINHDVRVS 162 (364)
Q Consensus 87 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~---~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~ 162 (364)
.+.+..+.-....+.|+.-+..|.++--. +..+.....+. ....|..+.- +. ++..++..+.+|.++...+..-
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 44555555544555666666788766543 32221111133 3455666543 32 4678999999999999887643
Q ss_pred c----c-eeeeeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCC------CcceEEecccccceeEEEEccCCC
Q 040533 163 N----N-VTSRINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSS------SKCLHRFRDHRAAVKALAWCPYQF 231 (364)
Q Consensus 163 ~----~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~ 231 (364)
. . ....+. ..+.+..+........++..+..|.+..+....... +.....+.. ...|..+...+++.
T Consensus 101 ~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~ 178 (276)
T 3no0_A 101 EYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEP 178 (276)
T ss_dssp TTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCS
T ss_pred hhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCC
Confidence 2 1 111122 234555555555556788888999988887543211 111122322 34455544444443
Q ss_pred cEEEeecCCCCCeEEEEECC
Q 040533 232 NVLASGGGTQDGCIKIWNVQ 251 (364)
Q Consensus 232 ~~~~~~~g~~d~~i~i~d~~ 251 (364)
.+++.. ..|.++...+.
T Consensus 179 ~ll~~T---~~G~~kr~~~~ 195 (276)
T 3no0_A 179 YLLVIT---AKGRVKKISHE 195 (276)
T ss_dssp EEEEEE---TTSCEEEEEGG
T ss_pred EEEEEe---CCCcEEEeEHH
Confidence 444433 57888777653
No 388
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=33.03 E-value=3e+02 Score=25.55 Aligned_cols=105 Identities=10% Similarity=-0.005 Sum_probs=56.0
Q ss_pred CCceEEEEcCCC-CEEEEEecCCcEEEEecCCcceeeeeecC-------CCcEEEEEeecCCCCEEEEeeCC-------C
Q 040533 88 DFPTSISWSQDA-KTLAVGYMASKLQLWDAETSKLIRNLEGH-------DKRVATASWNHWNGHILTSGSQD-------K 152 (364)
Q Consensus 88 ~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~d-------g 152 (364)
..|..|+++|.. ..+.++...|.|...+ +.++.-..+..+ ...|.+++++|.+.+.++.+... +
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 379999999963 4566676566665554 334333333222 24589999998555555554421 1
Q ss_pred cEEEEEcccCcceeeeee-cc--------cCcEEEEEEcCC-CCEEEEEeC
Q 040533 153 SIINHDVRVSNNVTSRIN-AH--------TAEVCGLKWSNE-GNLLASGGD 193 (364)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~-~~--------~~~v~~~~~~~~-~~~l~~~~~ 193 (364)
...+|.-..+..-..... .. ...+..|+++|. ...++.+..
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 234554433322111111 11 012467889884 456666653
No 389
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=32.08 E-value=2.3e+02 Score=23.87 Aligned_cols=183 Identities=6% Similarity=0.005 Sum_probs=93.4
Q ss_pred cEEEEecCCc--ceeeeeec------CCCcEEEEEee---cC---CCCEEEEee-CCCcEEEEEcccCcceeeeeecccC
Q 040533 110 KLQLWDAETS--KLIRNLEG------HDKRVATASWN---HW---NGHILTSGS-QDKSIINHDVRVSNNVTSRINAHTA 174 (364)
Q Consensus 110 ~i~iw~~~~~--~~~~~~~~------~~~~v~~~~~~---~~---~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~ 174 (364)
+|.+||+.++ +.++++.- ....+..+++. |. ++.++.... ..+-|.++|+.+++. .+.. |..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~--~~~ 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVT--HPT 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEE--CGG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEc--cCC
Confidence 5888999998 88877653 23457788887 21 133444443 456799999987764 3332 321
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCCCcceEEecccccceeEEEEccC----CCcEEEeecCCCCCeEEEEE-
Q 040533 175 EVCGLKWSNEGNLLASGGDDNLVHVWDHSKMSSSKCLHRFRDHRAAVKALAWCPY----QFNVLASGGGTQDGCIKIWN- 249 (364)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~g~~d~~i~i~d- 249 (364)
|.|+.....+. +|.-.-| ...+..|+.+|+ ++.+....- ....+.-..
T Consensus 201 ------~~pd~~~~~~i--~G~~~~~-----------------~~Gi~gIaLsp~~~~~~~~LYf~pl--ss~~ly~V~T 253 (381)
T 3q6k_A 201 ------FKAERPTKFDY--GGKEYEF-----------------KAGIFGITLGDRDSEGNRPAYYLAG--SAIKVYSVNT 253 (381)
T ss_dssp ------GSCCSCEEEEE--TTEEEEE-----------------CCCEEEEEECCCCTTSCCEEEEEES--SCSEEEEEEH
T ss_pred ------CccccCcceEE--CCEEeEe-----------------ccCceEEEecCCcCCCCeEEEEEEC--CCCcEEEEEH
Confidence 34541111111 2221111 244778888887 555555543 222233222
Q ss_pred --CCC---CeEEEEEecC---CCeEEEEEc-CCccceeeeccCCccCCCCeEEEeeCCC-C---ceeeecc--cccccee
Q 040533 250 --VQK---GTCIHSVDTK---AQICGLEWN-RHHKEILSGHGFSSSGDGQKLCLWKYPH-M---TKWGELQ--HQTSRIL 314 (364)
Q Consensus 250 --~~~---~~~~~~~~~~---~~v~~~~~~-~~~~~l~~~~~~~~~~~~~~i~i~d~~~-~---~~~~~~~--~~~~~i~ 314 (364)
+++ ...++.+... +.-..++++ .+|...++-. +.+.|..|+..+ . +....+. ..-..+.
T Consensus 254 ~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~------~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd 327 (381)
T 3q6k_A 254 KELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEA------NTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGT 327 (381)
T ss_dssp HHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEES------SSSEEEEEETTSCSBCGGGEEEEEECTTCCSEE
T ss_pred HHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEec------cCCeEEEEeCCCCccccCceEEEEECCCccccC
Confidence 111 1222222222 344556775 5666555543 388999999865 1 1112211 1122455
Q ss_pred EEeecCCCCEEEEE
Q 040533 315 ELSQSPDGLTVVSA 328 (364)
Q Consensus 315 ~i~~~~~~~~l~~~ 328 (364)
.+.+.++|.+.+..
T Consensus 328 ~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 328 DISVDSKGGLWFMS 341 (381)
T ss_dssp EEEECTTSCEEEEE
T ss_pred eEEECCCCeEEEEE
Confidence 66666666544443
No 390
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=30.68 E-value=2.4e+02 Score=23.72 Aligned_cols=149 Identities=10% Similarity=0.081 Sum_probs=78.9
Q ss_pred eecccCCCccEEEEEeCCeEEEEECCCC-ce--------eeeeeecC-CCCCceEEEEcCCCCEEEEEecCCcEEEEecC
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQENG-EV--------QKLLKVTG-EDDFPTSISWSQDAKTLAVGYMASKLQLWDAE 117 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~-~~--------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 117 (364)
+..++-.....++...+|.|+.|-.... ++ .....+.. ....|..++-. ....++-..+|.|..|-..
T Consensus 123 i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n 200 (406)
T 4d9s_A 123 IKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWG 200 (406)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECC
T ss_pred EEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC--CCeEEEEeCCCCEEEeeCC
Confidence 4445545556778888999999975432 11 00111111 12245555543 3445555678999999643
Q ss_pred Ccc-----------eeeeeec-CCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce----------eeeee-cccC
Q 040533 118 TSK-----------LIRNLEG-HDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV----------TSRIN-AHTA 174 (364)
Q Consensus 118 ~~~-----------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----------~~~~~-~~~~ 174 (364)
... ....+.. ....|..++. .....+.-..+|.|+.|-.....++ ...+. ....
T Consensus 201 ~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~---G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~ 277 (406)
T 4d9s_A 201 RYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC---GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS 277 (406)
T ss_dssp TTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE---CSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTS
T ss_pred CCCCCCCCCCCCcCccEEecccCCceEEEEEE---CCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCC
Confidence 211 1111111 1235666655 5556666678999999975433211 01111 1123
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 175 EVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
.|..++-.. .+.+.-..||.|+.|=..
T Consensus 278 ~v~~i~~G~--~hs~alt~~G~v~~wG~n 304 (406)
T 4d9s_A 278 FISQISGGW--RHTMALTSDGKLYGWGWN 304 (406)
T ss_dssp CEEEEEECS--SEEEEEETTSCEEEEECC
T ss_pred CEEEEEecC--CEEEEEcCCCeEEEeeCC
Confidence 466665433 345555678999999644
No 391
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=28.57 E-value=2e+02 Score=25.34 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=23.2
Q ss_pred CCCCceEEEEcCCCCEEEEEecCCcEEE
Q 040533 86 EDDFPTSISWSQDAKTLAVGYMASKLQL 113 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i 113 (364)
...+|..|.++++..+|.+++.++.++|
T Consensus 460 ~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 460 EPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp SCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred CCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 4578999999999999999987775554
No 392
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=28.13 E-value=2.3e+02 Score=26.14 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=23.9
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCCcEEE
Q 040533 85 GEDDFPTSISWSQDAKTLAVGYMASKLQL 113 (364)
Q Consensus 85 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 113 (364)
....+|..|.++++.+.|.+++.++.++|
T Consensus 467 ~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 467 REPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp SSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred CCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 45678999999999999999987775554
No 393
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=27.65 E-value=3e+02 Score=23.80 Aligned_cols=150 Identities=9% Similarity=0.046 Sum_probs=80.4
Q ss_pred eeecccCCCccEEEEEeCCeEEEEECCCC-cee-------------------------------eeeeecC-------CC
Q 040533 47 YSNMMDWGRNNILAIALGLELYLWKQENG-EVQ-------------------------------KLLKVTG-------ED 87 (364)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~-~~~-------------------------------~~~~~~~-------~~ 87 (364)
.+..++-.....++...+|.|+.|-.... ++- ....+.. ..
T Consensus 68 ~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~ 147 (473)
T 3of7_A 68 KIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEG 147 (473)
T ss_dssp CEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTT
T ss_pred CEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCC
Confidence 35556655667888889999999965321 110 0000100 12
Q ss_pred CCceEEEEcCCCCEEEEEecCCcEEEEecC---Ccce------------eeeeec-CCCcEEEEEeecCCCCEEEEeeCC
Q 040533 88 DFPTSISWSQDAKTLAVGYMASKLQLWDAE---TSKL------------IRNLEG-HDKRVATASWNHWNGHILTSGSQD 151 (364)
Q Consensus 88 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~---~~~~------------~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d 151 (364)
..|..++.. ....++-..+|.|+.|-.. .+++ ...+.. ....|..++. .....+.-..+
T Consensus 148 ~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~---G~~hs~alt~~ 222 (473)
T 3of7_A 148 HKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAP---GKDHILFLDEE 222 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEE---CSSEEEEEETT
T ss_pred CcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEe---cCCeEEEEeCC
Confidence 445555554 3344445678999999741 1111 111111 1224666665 56667777889
Q ss_pred CcEEEEEcccCcceee------------eeecccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 040533 152 KSIINHDVRVSNNVTS------------RINAHTAEVCGLKWSNEGNLLASGGDDNLVHVWDHS 203 (364)
Q Consensus 152 g~i~~~d~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 203 (364)
|.|+.|-.....++-. ........|..++... ...+.-..+|.|+.|-..
T Consensus 223 G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~--~hs~alt~~G~v~~wG~n 284 (473)
T 3of7_A 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGE--NHCFALTKDNKLVSWGLN 284 (473)
T ss_dssp SCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECS--SEEEEEETTSCEEEEEEC
T ss_pred CeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCC--CeEEEEecCCCEEEeCCC
Confidence 9999997543321100 0000113566666543 345555678899999643
No 394
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=27.63 E-value=3e+02 Score=23.80 Aligned_cols=148 Identities=9% Similarity=0.007 Sum_probs=78.6
Q ss_pred eecccCCCccEEEEEeCCeEEEEECC---CCce----------eeeeeecCC-CCCceEEEEcCCCCEEEEEecCCcEEE
Q 040533 48 SNMMDWGRNNILAIALGLELYLWKQE---NGEV----------QKLLKVTGE-DDFPTSISWSQDAKTLAVGYMASKLQL 113 (364)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~i~iw~~~---~~~~----------~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~i 113 (364)
+..++-.....++...+|.|+.|-.. .+++ .....+..- ...|..|+.. ....++-..+|.|..
T Consensus 150 i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~ 227 (473)
T 3of7_A 150 VVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPG--KDHILFLDEEGMVFA 227 (473)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred EEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEec--CCeEEEEeCCCeEEE
Confidence 55555555667888889999999852 1111 011111111 2236666653 344555567899999
Q ss_pred EecCCcceee-------------eeecCCCcEEEEEeecCCCCEEEEeeCCCcEEEEEcccCcce--------------e
Q 040533 114 WDAETSKLIR-------------NLEGHDKRVATASWNHWNGHILTSGSQDKSIINHDVRVSNNV--------------T 166 (364)
Q Consensus 114 w~~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--------------~ 166 (364)
|-......+. ........|..++- .....++-..+|.|+.|-.....++ .
T Consensus 228 wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~---G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P 304 (473)
T 3of7_A 228 WGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIAS---GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKP 304 (473)
T ss_dssp EECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEE---CSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEE
T ss_pred EeCCCCCCCCCCccccccccccCceecCCcceEEEec---CCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecc
Confidence 9654321110 00001135666655 5566666678999999975432210 0
Q ss_pred eeee-cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 040533 167 SRIN-AHTAEVCGLKWSNEGNLLASGGDDNLVHVWDH 202 (364)
Q Consensus 167 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 202 (364)
..+. .....|..++.... ..+.-..+|.|+.|=.
T Consensus 305 ~~v~~~~~~~i~~ia~G~~--hs~~lt~~G~v~~wG~ 339 (473)
T 3of7_A 305 KRLALPDNVVIRSIAAGEH--HSLILSQDGDLYSCGR 339 (473)
T ss_dssp EECCCCTTCCEEEEEECSS--EEEEEETTSCEEEEEE
T ss_pred ccccccCCccEEEEEeCCC--eEEEEeCCCeEEEEEC
Confidence 0111 11234666655433 4444467888988864
No 395
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=26.88 E-value=1.8e+02 Score=25.57 Aligned_cols=69 Identities=6% Similarity=0.126 Sum_probs=41.5
Q ss_pred cEEEEEeecC-----CCCEEEEeeCCCcEEEEEcc-cC------cceeeeeec--ccCcEEEEEEcCCCCEEEEEeCCCe
Q 040533 131 RVATASWNHW-----NGHILTSGSQDKSIINHDVR-VS------NNVTSRINA--HTAEVCGLKWSNEGNLLASGGDDNL 196 (364)
Q Consensus 131 ~v~~~~~~~~-----~~~~l~~~~~dg~i~~~d~~-~~------~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~ 196 (364)
..++|+.... +-..++.|+.+|.|.=.-+. .. ...+..+.. ...+|..|.++++..+|++++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 3466655421 12467788889977533322 11 112222322 3578999999999999999998876
Q ss_pred EEE
Q 040533 197 VHV 199 (364)
Q Consensus 197 i~i 199 (364)
+++
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 396
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=24.29 E-value=1.4e+02 Score=26.71 Aligned_cols=56 Identities=9% Similarity=0.003 Sum_probs=32.5
Q ss_pred EEEEEeCCeEEEEECCCCc----eeeeeeecCCCCCce-EEEEcCCCCEEEEEecCCcEEE
Q 040533 58 ILAIALGLELYLWKQENGE----VQKLLKVTGEDDFPT-SISWSQDAKTLAVGYMASKLQL 113 (364)
Q Consensus 58 ~~~~~~~~~i~iw~~~~~~----~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~i 113 (364)
++.+..+|.|.-..+..+. ....+.+.....+|. .|.+++++.+|.+++.++.++|
T Consensus 416 ~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 416 VFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred EEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 3445566766444443221 222233333356775 8999999999999986654444
No 397
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=22.19 E-value=2.6e+02 Score=25.67 Aligned_cols=57 Identities=9% Similarity=0.177 Sum_probs=0.0
Q ss_pred CEEEEeeCCCcE-EEEEcccCcceeeeeeccc--CcEEEEEEcCCC--CEEEEEeCCCeEEE
Q 040533 143 HILTSGSQDKSI-INHDVRVSNNVTSRINAHT--AEVCGLKWSNEG--NLLASGGDDNLVHV 199 (364)
Q Consensus 143 ~~l~~~~~dg~i-~~~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~--~~l~~~~~d~~i~i 199 (364)
..++.|+.+|.| ++.........+....... .+|..|.++++. .+|++++.++.+++
T Consensus 416 tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 416 DVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
No 398
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=21.54 E-value=4.4e+02 Score=23.64 Aligned_cols=159 Identities=13% Similarity=0.142 Sum_probs=86.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCC---------cceEEec-------ccc----c-c-eeEEEEccCCCcEEEeecCCCC
Q 040533 185 GNLLASGGDDNLVHVWDHSKMSSS---------KCLHRFR-------DHR----A-A-VKALAWCPYQFNVLASGGGTQD 242 (364)
Q Consensus 185 ~~~l~~~~~d~~i~iwd~~~~~~~---------~~~~~~~-------~~~----~-~-v~~~~~~~~~~~~~~~~~g~~d 242 (364)
...++.|+.||.++.+|.. +.+. ..+..+. .|. + + +..+.+...-+.+++.+-+.-.
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 3588899999999999865 3220 0011110 021 1 1 2223222111233444322234
Q ss_pred CeEEEEECCC---CeEEEEEecCC--------CeEEEEEcCCcc-ceeeeccCCccCCCCeEEEeeCCCCceeeeccccc
Q 040533 243 GCIKIWNVQK---GTCIHSVDTKA--------QICGLEWNRHHK-EILSGHGFSSSGDGQKLCLWKYPHMTKWGELQHQT 310 (364)
Q Consensus 243 ~~i~i~d~~~---~~~~~~~~~~~--------~v~~~~~~~~~~-~l~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 310 (364)
..++..|+.+ .+.+..+.... .-..+.--.+++ .++.+.++........|++.|+.++..+..+....
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~ 243 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTG 243 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECC
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCC
Confidence 4677778765 45555554210 011122223444 44556666666667899999999999998775321
Q ss_pred -----c---ceeEEeecCCC--CEEEEEeCCCcEEEEEeeCCCC
Q 040533 311 -----S---RILELSQSPDG--LTVVSAAADETLRFWEAFGPSG 344 (364)
Q Consensus 311 -----~---~i~~i~~~~~~--~~l~~~~~dg~i~vw~~~~~~~ 344 (364)
. .+.-+....|| .+++.|...|.|.-+|+.....
T Consensus 244 ~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~~ 287 (570)
T 3hx6_A 244 RTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGKV 287 (570)
T ss_dssp STTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSSC
T ss_pred CCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCCc
Confidence 1 12222223333 4799999999999899877543
No 399
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=20.08 E-value=3.7e+02 Score=24.26 Aligned_cols=29 Identities=14% Similarity=0.009 Sum_probs=23.0
Q ss_pred CCCCceEEEEcCCCCEEEEEecCCcEEEE
Q 040533 86 EDDFPTSISWSQDAKTLAVGYMASKLQLW 114 (364)
Q Consensus 86 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 114 (364)
...+|..+.++++...|.+++.++.++|-
T Consensus 417 ~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 417 RAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp SCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred CCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 46688999999999999999877655553
Done!