BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040534
(822 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|B Chain B, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|C Chain C, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|D Chain D, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
Length = 392
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 114/357 (31%), Positives = 179/357 (50%), Gaps = 41/357 (11%)
Query: 469 FKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSIFFLSQDDRFMIKT 528
FK+K+YCP VFRNLR+ F ID DY++S+ N S G+ F +S D +IK
Sbjct: 69 FKFKEYCPQVFRNLRDRFGIDDQDYLVSLTRNPPSESEGSDGR----FLISYDRTLVIKE 124
Query: 529 LRKSEVKVLLQMLPTYHDH-VRSYENTLITKFFGLHRIKPSSGQKFRFVVMGNMFCTELR 587
+ ++ + L YH + V+ + NTL+ +F G++R+ + + +VM NMF L
Sbjct: 125 VSSEDIADMHSNLSNYHQYIVKCHGNTLLPQFLGMYRVSVDNEDSY-MLVMRNMFSHRLP 183
Query: 588 IHRRFDLKGSSLGR-STDNIEIDENTTLKDLDL---NYCFYLEPSWREDLLKQIEIDSKF 643
+HR++DLKGS + R ++D ++ E TL+D+D N Y+ ++ L++++ D +F
Sbjct: 184 VHRKYDLKGSLVSREASDKEKVKELPTLRDMDFLNKNQKVYIGEEEKKIFLEKLKRDVEF 243
Query: 644 LEAQQIMDYSLLLGVHYRAPQHLRSLTTIREDGLGIVAEEEDEISNYQGLVLVPRGTDDS 703
L +IMDYSLLLG+H IR G EEE + + V D
Sbjct: 244 LVQLKIMDYSLLLGIH----------DIIR----GSEPEEEAPVREDESEV-----DGDC 284
Query: 704 SVIAGPHIRGSRLRASSAGDEEVDLLLP-GTARLQIQLGVNMPARAEQIPGKQEDLFHQS 762
S+ P + GS + + P G + + V AE P K+
Sbjct: 285 SLTGPPALVGSYGTSPEGIGGYIHSHRPLGPGEFESFIDVYAIRSAEGAPQKE------- 337
Query: 763 YDVVLYLGIIDILQEYNMSKKIEHAYKSLQFDS-ISISAVDPTFYSHRFLEFIEKVF 818
V ++G+IDIL +Y+ KK HA K+++ + IS V P Y+ RFL+FI +F
Sbjct: 338 ---VYFMGLIDILTQYDAKKKAAHAAKTVKHGAGAEISTVHPEQYAKRFLDFITNIF 391
>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
Length = 416
Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 170/364 (46%), Gaps = 55/364 (15%)
Query: 469 FKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSIFFLSQDDRFMIKT 528
FK+K+YCPMVFRNLRE F ID DY S+ + + S G+ G+ F + D RF+IKT
Sbjct: 93 FKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINS-DSQGRCGTRFLTTYDRRFVIKT 151
Query: 529 LRKSEVKVLLQMLPTYHDH-VRSYENTLITKFFGLHRIKPSSGQKFRFVVMGNMFCTELR 587
+ +V + +L YH V + NTL+ +F G++R+ G + VV N+F L
Sbjct: 152 VSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLT-VDGVETYMVVTRNVFSHRLT 210
Query: 588 IHRRFDLKGSSLGR-STDNIEIDENTTLKDLDL---NYCFYLEPSWREDLLKQIEIDSKF 643
+HR++DLKGS++ R ++D + + T KD D ++ +++ L++++ D +F
Sbjct: 211 VHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEF 270
Query: 644 LEAQQIMDYSLLLGVH--------YRAPQHLRSLTTIREDGLGIVAEEEDEISNYQGLVL 695
L +IMDYSLL+G+H + DG+G G +L
Sbjct: 271 LAQLKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVG-------------GNLL 317
Query: 696 VPRGTDDSSVIAGPHIRGSRLRASSAGDEEVDLLLPGTARLQIQLGVNMPARAEQIPGKQ 755
GT S G + R D VD V E P K+
Sbjct: 318 CSYGTPPDS--PGNLLSFPRFFGPGEFDPSVD--------------VYAMKSHESSPKKE 361
Query: 756 EDLFHQSYDVVLYLGIIDILQEYNMSKKIEHAYKSLQFDS-ISISAVDPTFYSHRFLEFI 814
V ++ IIDIL Y+ KK HA K+++ + IS V+P YS RF EF+
Sbjct: 362 ----------VYFMAIIDILTPYDTKKKAAHAAKTVKHGAGAEISTVNPEQYSKRFNEFM 411
Query: 815 EKVF 818
+
Sbjct: 412 SNIL 415
>pdb|2YBX|A Chain A, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
Length = 394
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 145/256 (56%), Gaps = 13/256 (5%)
Query: 411 RSYDLMLSLQL-GIRYTVGKITPVQ-RRDVRASDFGPRASFWMNFPKEGSQLTPPHQSED 468
+S D +LS+ + G+ +++ +++ VQ + DF + ++ + P H
Sbjct: 21 QSMDPLLSVLMWGVNHSINELSHVQIPVMLMPDDFKAYSKIKVDNHLFNKENMPSH---- 76
Query: 469 FKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSIFFLSQDDRFMIKT 528
FK+K+YCPMVFRNLRE F ID D+ S+ + L S +SG+ F S D R++IKT
Sbjct: 77 FKFKEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPN-DSQARSGARFHTSYDKRYIIKT 135
Query: 529 LRKSEVKVLLQMLPTYHDH-VRSYENTLITKFFGLHRIKPSSGQKFRFVVMGNMFCTELR 587
+ +V + +L YH + V + TL+ +F G++R+ G + +V N+F L
Sbjct: 136 ITSEDVAEMHNILKKYHQYIVECHGITLLPQFLGMYRLN-VDGVEIYVIVTRNVFSHRLS 194
Query: 588 IHRRFDLKGSSLGR-STDNIEIDENTTLKDLDL---NYCFYLEPSWREDLLKQIEIDSKF 643
++R++DLKGS++ R ++D + E TLKD D Y++ + ++ L++++ D +F
Sbjct: 195 VYRKYDLKGSTVAREASDKEKAKELPTLKDNDFINEGQKIYIDDNNKKVFLEKLKKDVEF 254
Query: 644 LEAQQIMDYSLLLGVH 659
L ++MDYSLL+G+H
Sbjct: 255 LAQLKLMDYSLLVGIH 270
>pdb|1H3I|A Chain A, Crystal Structure Of The Histone Methyltransferase Set79
pdb|1H3I|B Chain B, Crystal Structure Of The Histone Methyltransferase Set79
Length = 293
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 198 NGDSFEGSWLNGMMHGFGVYTWSDGGSYVGTWSRGLKDGKGTFY 241
+G + EG +++ + G GVYT+ DGG GT+ G +G Y
Sbjct: 4 DGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEY 47
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 25/150 (16%)
Query: 129 DGLTYKGRWRLNLKHGLGYQVYPNGDVFEGSWIQGAAEGPGK-YTWANRDVYLXXXXXXX 187
DG T +G + + G G Y +G V +G+++ G GP + Y R +
Sbjct: 4 DGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLI--------- 54
Query: 188 XXXXXTLTWTNGDSFEGSWLNGMMHGFGVYTWSDGGSYVGTWSR-GLKDGKGTFYPNGIQ 246
F+G + + + HG + DGGS VG + G G+ Y +
Sbjct: 55 --------------FKGQYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDE 100
Query: 247 LSVLQEPYLNALRIRGLLPDMRRQTHAHAH 276
+ L +++ I G L + H
Sbjct: 101 RTALYGKFIDGEMIEGKLATLMSTEEGRPH 130
>pdb|1MT6|A Chain A, Structure Of Histone H3 K4-Specific Methyltransferase
Set79 WITH ADOHCY
Length = 280
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 88 EGEWRRGMRHGNGKIRWPSGTVYEGEFXXXXXXXXXXXXXXDG-LTYKGRWRLNLKHGLG 146
EG + G G + G V +G + DG L +KG+++ N++HG+
Sbjct: 3 EGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVC 62
Query: 147 YQVYPNG 153
+ YP+G
Sbjct: 63 WIYYPDG 69
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 201 SFEGSWLNGMMHGFGVYTWSDGGSYVGTWSRGLKDGKGTFY 241
+ EG +++ + G GVYT+ DGG GT+ G +G Y
Sbjct: 1 TLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEY 41
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 25/147 (17%)
Query: 132 TYKGRWRLNLKHGLGYQVYPNGDVFEGSWIQGAAEGPGK-YTWANRDVYLXXXXXXXXXX 190
T +G + + G G Y +G V +G+++ G GP + Y R +
Sbjct: 1 TLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLI------------ 48
Query: 191 XXTLTWTNGDSFEGSWLNGMMHGFGVYTWSDGGSYVGTWSR-GLKDGKGTFYPNGIQLSV 249
F+G + + + HG + DGGS VG + G G+ Y + +
Sbjct: 49 -----------FKGQYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTA 97
Query: 250 LQEPYLNALRIRGLLPDMRRQTHAHAH 276
L +++ I G L + H
Sbjct: 98 LYGKFIDGEMIEGKLATLMSTEEGRPH 124
>pdb|1N6C|A Chain A, Structure Of Set79
Length = 297
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 98 GNGKIRWPSGTVYEGEFXXXXXXXXXXXXXXDG-LTYKGRWRLNLKHGLGYQVYPNG 153
G G + G V +G + DG L +KG+++ N++HG+ + YP+G
Sbjct: 1 GQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDG 57
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 199 GDSFEGSWLNGMMHGFGVYTWSDGGSYVGTWSRGLKDGKGTFYPNGIQL 247
G + G W+ + T G Y+ W+ D TFY NG L
Sbjct: 1180 GTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSSQTFYTNGTNL 1228
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 199 GDSFEGSWLNGMMHGFGVYTWSDGGSYVGTWSRGLKDGKGTFYPNGIQL 247
G + G W+ + T G Y+ W+ D TFY NG L
Sbjct: 1173 GTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSSQTFYTNGTNL 1221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,727,619
Number of Sequences: 62578
Number of extensions: 1055515
Number of successful extensions: 2682
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2643
Number of HSP's gapped (non-prelim): 26
length of query: 822
length of database: 14,973,337
effective HSP length: 107
effective length of query: 715
effective length of database: 8,277,491
effective search space: 5918406065
effective search space used: 5918406065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)