Query 040540
Match_columns 669
No_of_seqs 420 out of 4249
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 15:05:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.9E-51 6.5E-56 471.9 32.2 295 4-305 7-356 (768)
2 4eco_A Uncharacterized protein 100.0 1.6E-50 5.5E-55 453.8 27.0 421 6-444 27-585 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 7.6E-49 2.6E-53 447.0 28.5 414 6-444 266-825 (876)
4 3rgz_A Protein brassinosteroid 100.0 1.9E-47 6.5E-52 438.7 31.6 391 51-450 269-730 (768)
5 3t6q_A CD180 antigen; protein- 100.0 1.1E-40 3.8E-45 373.9 34.5 375 51-438 33-463 (606)
6 1ogq_A PGIP-2, polygalacturona 100.0 3.8E-42 1.3E-46 351.7 19.1 293 5-303 2-302 (313)
7 4eco_A Uncharacterized protein 100.0 7.5E-42 2.6E-46 383.4 22.9 364 62-438 194-601 (636)
8 3t6q_A CD180 antigen; protein- 100.0 9.8E-40 3.4E-44 366.2 34.7 381 50-443 56-519 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1E-39 3.6E-44 365.9 33.4 370 50-439 31-512 (606)
10 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-40 3.9E-45 369.3 25.2 380 38-441 3-514 (549)
11 3j0a_A TOLL-like receptor 5; m 100.0 5E-40 1.7E-44 381.0 27.9 397 39-443 14-545 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 6.9E-40 2.4E-44 373.3 25.9 359 67-439 440-842 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 2.7E-39 9.2E-44 360.0 28.7 382 51-441 28-535 (570)
14 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-38 5.5E-43 361.2 34.6 380 51-436 25-466 (680)
15 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-38 1.5E-42 352.9 33.0 374 50-443 55-539 (606)
16 3v47_A TOLL-like receptor 5B a 100.0 1.9E-38 6.6E-43 342.8 28.4 366 51-442 30-413 (455)
17 2z7x_B TOLL-like receptor 1, v 100.0 4.9E-38 1.7E-42 345.6 25.5 364 51-438 21-482 (520)
18 1ziw_A TOLL-like receptor 3; i 100.0 4.1E-37 1.4E-41 349.6 33.0 379 52-438 223-623 (680)
19 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.6E-37 3.3E-41 338.2 27.9 362 54-439 34-512 (562)
20 3j0a_A TOLL-like receptor 5; m 100.0 8.7E-37 3E-41 353.9 28.5 372 54-441 7-521 (844)
21 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-36 3.7E-41 337.3 24.1 366 56-442 10-468 (549)
22 2z63_A TOLL-like receptor 4, v 100.0 6E-36 2E-40 333.0 28.2 371 55-442 11-488 (570)
23 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-35 5.1E-40 334.2 31.2 381 51-443 52-561 (635)
24 2z7x_B TOLL-like receptor 1, v 100.0 3.4E-36 1.2E-40 330.9 24.9 340 50-415 44-483 (520)
25 3v47_A TOLL-like receptor 5B a 100.0 5.4E-35 1.8E-39 315.9 27.8 355 56-438 15-385 (455)
26 3omv_A RAF proto-oncogene seri 100.0 3.7E-37 1.3E-41 309.1 9.9 198 446-662 76-303 (307)
27 1o6v_A Internalin A; bacterial 100.0 7.9E-34 2.7E-38 307.1 34.9 344 51-438 46-389 (466)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.1E-35 2.4E-39 323.2 27.3 343 51-417 52-514 (562)
29 4asz_A BDNF/NT-3 growth factor 100.0 1.3E-36 4.5E-41 305.2 10.2 192 446-660 59-290 (299)
30 4aoj_A High affinity nerve gro 100.0 2.8E-36 9.5E-41 307.2 11.8 192 446-660 87-320 (329)
31 4gt4_A Tyrosine-protein kinase 100.0 2.1E-36 7.2E-41 305.1 9.4 188 447-657 74-304 (308)
32 4g8a_A TOLL-like receptor 4; l 100.0 8.1E-34 2.8E-38 320.0 31.2 373 56-443 36-537 (635)
33 3bz5_A Internalin-J, INLJ; leu 100.0 1.9E-33 6.4E-38 301.8 30.9 349 51-444 42-394 (457)
34 2id5_A Lingo-1, leucine rich r 100.0 1E-33 3.5E-38 307.6 28.8 302 75-389 32-333 (477)
35 2id5_A Lingo-1, leucine rich r 100.0 9.2E-34 3.1E-38 308.0 27.1 304 51-367 32-335 (477)
36 4fcg_A Uncharacterized protein 100.0 2.2E-34 7.6E-39 295.8 17.4 278 5-304 23-313 (328)
37 1jl5_A Outer protein YOPM; leu 100.0 1.5E-33 5.3E-38 302.2 22.1 335 52-444 12-379 (454)
38 1o6v_A Internalin A; bacterial 100.0 4E-32 1.4E-36 293.8 32.1 323 51-415 68-390 (466)
39 3o6n_A APL1; leucine-rich repe 100.0 1.8E-32 6.2E-37 289.6 26.5 312 72-438 42-353 (390)
40 3oja_B Anopheles plasmodium-re 100.0 2.7E-32 9.1E-37 304.2 28.0 313 72-439 48-360 (597)
41 4g3f_A NF-kappa-beta-inducing 100.0 3.5E-34 1.2E-38 290.2 10.4 189 450-660 98-317 (336)
42 3hmm_A TGF-beta receptor type- 100.0 1.9E-33 6.4E-38 284.4 15.4 200 451-660 46-298 (303)
43 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-31 3.8E-36 288.0 29.8 315 64-438 31-353 (457)
44 4ase_A Vascular endothelial gr 100.0 2.4E-34 8.3E-39 295.2 8.1 192 447-660 112-348 (353)
45 3o6n_A APL1; leucine-rich repe 100.0 1.2E-31 4.2E-36 283.2 26.8 309 51-414 45-353 (390)
46 3fpq_A Serine/threonine-protei 100.0 6E-34 2.1E-38 283.7 8.3 185 447-652 70-282 (290)
47 3oja_B Anopheles plasmodium-re 100.0 1.2E-31 4E-36 299.0 26.7 287 51-365 51-337 (597)
48 4fih_A Serine/threonine-protei 100.0 2.1E-33 7.1E-38 285.3 9.9 183 447-652 116-323 (346)
49 1ogq_A PGIP-2, polygalacturona 100.0 9.7E-33 3.3E-37 281.9 14.7 249 75-335 50-302 (313)
50 4fmz_A Internalin; leucine ric 100.0 7.2E-31 2.5E-35 272.8 29.0 302 52-437 45-346 (347)
51 4b9d_A Serine/threonine-protei 100.0 3.3E-33 1.1E-37 284.3 7.7 182 447-652 68-276 (350)
52 4fmz_A Internalin; leucine ric 100.0 3.8E-30 1.3E-34 267.3 30.2 282 50-413 65-346 (347)
53 1jl5_A Outer protein YOPM; leu 100.0 3E-30 1E-34 276.7 30.1 330 52-444 72-418 (454)
54 4fie_A Serine/threonine-protei 100.0 1.4E-32 4.7E-37 286.3 9.2 183 447-652 193-400 (423)
55 3ubd_A Ribosomal protein S6 ki 100.0 2.8E-32 9.4E-37 273.0 7.0 175 448-647 72-271 (304)
56 4aw0_A HPDK1, 3-phosphoinositi 100.0 2.3E-32 8E-37 273.4 6.1 180 447-651 77-283 (311)
57 1xku_A Decorin; proteoglycan, 100.0 1.9E-29 6.5E-34 260.1 27.7 244 52-306 32-277 (330)
58 2ft3_A Biglycan; proteoglycan, 100.0 9.5E-30 3.3E-34 262.5 25.4 219 52-305 34-254 (332)
59 3hyh_A Carbon catabolite-derep 100.0 7.7E-32 2.6E-36 266.0 8.4 179 448-652 59-262 (275)
60 1xku_A Decorin; proteoglycan, 100.0 1.7E-29 5.8E-34 260.4 26.2 283 38-334 30-329 (330)
61 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-29 6.6E-34 260.2 23.8 282 38-334 32-330 (332)
62 2z80_A TOLL-like receptor 2, v 100.0 1.8E-29 6.2E-34 262.8 18.0 287 32-341 23-318 (353)
63 4fcg_A Uncharacterized protein 100.0 6.5E-29 2.2E-33 255.1 19.2 285 20-339 24-316 (328)
64 1z7x_W Ribonuclease inhibitor; 100.0 6.6E-32 2.3E-36 292.1 -3.4 359 51-414 3-412 (461)
65 4g31_A Eukaryotic translation 100.0 2.4E-30 8.2E-35 260.2 6.6 181 447-652 48-279 (299)
66 1z7x_W Ribonuclease inhibitor; 100.0 9.5E-32 3.2E-36 290.9 -4.9 360 75-438 3-412 (461)
67 2z66_A Variable lymphocyte rec 100.0 2.7E-28 9.3E-33 248.6 18.6 231 75-307 28-263 (306)
68 3zyi_A Leucine-rich repeat-con 100.0 3.5E-27 1.2E-31 254.0 25.4 247 53-305 56-303 (452)
69 2z66_A Variable lymphocyte rec 100.0 1.1E-27 3.7E-32 244.2 19.9 244 38-283 6-263 (306)
70 1wwl_A Monocyte differentiatio 100.0 3.4E-30 1.2E-34 263.2 0.6 248 73-338 41-310 (312)
71 3zyj_A Leucine-rich repeat-con 100.0 9.1E-27 3.1E-31 249.8 24.9 247 53-305 45-292 (440)
72 3zyi_A Leucine-rich repeat-con 99.9 7.1E-27 2.4E-31 251.6 23.5 238 41-281 56-303 (452)
73 2z80_A TOLL-like receptor 2, v 99.9 7.3E-28 2.5E-32 250.6 15.0 257 51-307 52-316 (353)
74 3uto_A Twitchin; kinase, muscl 99.9 1.4E-28 4.8E-33 269.8 9.9 186 447-652 199-410 (573)
75 3oja_A Leucine-rich immune mol 99.9 8E-29 2.7E-33 268.2 7.6 302 123-476 34-353 (487)
76 1wwl_A Monocyte differentiatio 99.9 3.2E-29 1.1E-33 255.9 2.5 246 51-306 43-310 (312)
77 4b99_A Mitogen-activated prote 99.9 2.8E-28 9.7E-33 254.6 9.5 197 448-652 99-344 (398)
78 2qkw_B Protein kinase; three-h 99.9 1.5E-27 5.3E-32 244.8 14.5 204 447-659 80-315 (321)
79 3zyj_A Leucine-rich repeat-con 99.9 1.9E-26 6.5E-31 247.3 23.3 238 41-281 45-292 (440)
80 1ozn_A Reticulon 4 receptor; N 99.9 1.5E-26 5E-31 233.2 20.2 225 54-306 14-239 (285)
81 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-26 8.9E-31 231.3 21.5 254 78-372 14-268 (285)
82 4f9c_A Cell division cycle 7-r 99.9 4.9E-28 1.7E-32 250.2 8.9 129 448-584 65-249 (361)
83 3uim_A Brassinosteroid insensi 99.9 2.3E-27 8E-32 244.0 13.8 204 448-657 73-309 (326)
84 3v5w_A G-protein coupled recep 99.9 9.9E-28 3.4E-32 261.0 10.8 177 453-652 243-449 (689)
85 3s95_A LIMK-1, LIM domain kina 99.9 6.4E-28 2.2E-32 246.3 8.8 192 447-663 52-286 (310)
86 3cbl_A C-FES, proto-oncogene t 99.9 1.2E-27 4.1E-32 251.0 10.2 191 447-660 157-375 (377)
87 3soc_A Activin receptor type-2 99.9 7.6E-27 2.6E-31 239.6 14.7 202 449-660 65-319 (322)
88 2psq_A Fibroblast growth facto 99.9 3.2E-27 1.1E-31 246.9 12.0 192 447-661 131-366 (370)
89 2o6q_A Variable lymphocyte rec 99.9 7.9E-26 2.7E-30 225.7 21.1 215 36-255 2-216 (270)
90 3kmu_A ILK, integrin-linked ki 99.9 1.6E-27 5.3E-32 238.4 7.9 193 447-659 52-270 (271)
91 3kul_A Ephrin type-A receptor 99.9 2.3E-27 7.8E-32 243.6 9.3 193 447-662 95-316 (325)
92 2qol_A Ephrin receptor; recept 99.9 1.2E-27 4.2E-32 250.2 6.5 191 447-660 91-310 (373)
93 3p86_A Serine/threonine-protei 99.9 4.3E-27 1.5E-31 239.7 9.9 194 447-660 79-299 (309)
94 3lb7_A RAF proto-oncogene seri 99.9 4.7E-27 1.6E-31 239.2 10.0 196 447-662 77-303 (307)
95 4hcu_A Tyrosine-protein kinase 99.9 1E-26 3.5E-31 232.2 11.3 191 447-660 50-267 (269)
96 3ugc_A Tyrosine-protein kinase 99.9 9E-28 3.1E-32 243.4 3.5 205 447-661 56-293 (295)
97 2eva_A TAK1 kinase - TAB1 chim 99.9 2E-26 6.9E-31 234.7 12.3 196 447-662 46-266 (307)
98 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-26 3.7E-31 237.7 9.8 246 52-343 11-257 (317)
99 2nru_A Interleukin-1 receptor- 99.9 4.5E-26 1.5E-30 232.3 14.0 201 447-659 75-306 (307)
100 3q4u_A Activin receptor type-1 99.9 5.7E-26 2E-30 230.8 14.7 198 450-657 48-300 (301)
101 3poz_A Epidermal growth factor 99.9 1.3E-26 4.3E-31 238.5 9.6 189 447-659 62-278 (327)
102 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-26 8.5E-31 235.0 11.7 236 51-301 34-271 (317)
103 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-25 1.3E-29 244.0 22.0 235 32-306 15-255 (622)
104 1k9a_A Carboxyl-terminal SRC k 99.9 1.8E-26 6E-31 247.7 10.8 192 446-660 230-446 (450)
105 3op5_A Serine/threonine-protei 99.9 7.9E-27 2.7E-31 243.8 7.7 198 450-661 96-331 (364)
106 3c1x_A Hepatocyte growth facto 99.9 1.7E-26 5.7E-31 241.3 10.1 194 447-663 135-359 (373)
107 1luf_A Muscle-specific tyrosin 99.9 1.2E-26 4E-31 240.6 8.9 196 447-665 95-341 (343)
108 4f0f_A Serine/threonine-protei 99.9 3.4E-26 1.2E-30 230.8 12.0 191 447-657 68-287 (287)
109 3l9p_A Anaplastic lymphoma kin 99.9 1.3E-26 4.5E-31 242.0 9.2 190 448-660 120-346 (367)
110 2ozo_A Tyrosine-protein kinase 99.9 2E-26 6.9E-31 256.0 11.1 196 447-666 381-605 (613)
111 3sxs_A Cytoplasmic tyrosine-pr 99.9 1.8E-26 6.3E-31 230.3 9.0 191 447-660 48-265 (268)
112 3fxz_A Serine/threonine-protei 99.9 8.8E-27 3E-31 236.1 6.5 182 448-652 63-269 (297)
113 1tki_A Titin; serine kinase, m 99.9 2.2E-26 7.4E-31 235.7 9.4 185 448-652 47-257 (321)
114 1mp8_A Focal adhesion kinase 1 99.9 3E-26 1E-30 230.4 10.0 191 447-661 61-278 (281)
115 2z62_A TOLL-like receptor 4, v 99.9 8.4E-25 2.9E-29 219.1 20.5 221 56-281 12-237 (276)
116 1opk_A P150, C-ABL, proto-onco 99.9 2.3E-26 7.9E-31 249.6 9.8 190 446-658 260-477 (495)
117 3vhe_A Vascular endothelial gr 99.9 1.8E-26 6.2E-31 240.8 8.3 192 447-660 70-356 (359)
118 3kex_A Receptor tyrosine-prote 99.9 7.7E-26 2.6E-30 232.4 12.7 191 446-660 59-277 (325)
119 3gen_A Tyrosine-protein kinase 99.9 5.1E-26 1.7E-30 229.0 11.1 191 447-660 64-281 (283)
120 1rjb_A FL cytokine receptor; k 99.9 4.9E-26 1.7E-30 236.1 11.0 196 447-664 93-339 (344)
121 2ivs_A Proto-oncogene tyrosine 99.9 4.2E-26 1.4E-30 233.3 10.3 191 447-660 71-312 (314)
122 3t9t_A Tyrosine-protein kinase 99.9 6.3E-26 2.1E-30 226.3 11.3 191 447-660 48-265 (267)
123 4fvq_A Tyrosine-protein kinase 99.9 5.1E-26 1.7E-30 229.8 10.6 194 447-664 57-280 (289)
124 3tt0_A Basic fibroblast growth 99.9 6E-26 2E-30 238.6 11.3 192 447-661 119-354 (382)
125 3mdy_A Bone morphogenetic prot 99.9 3.7E-25 1.3E-29 228.7 17.1 195 457-661 86-333 (337)
126 3oja_A Leucine-rich immune mol 99.9 1.3E-25 4.6E-30 243.0 13.9 149 74-232 33-182 (487)
127 1t46_A HOMO sapiens V-KIT hard 99.9 6E-26 2E-30 232.1 10.6 196 447-664 71-312 (313)
128 1qcf_A Haematopoetic cell kina 99.9 2.9E-26 9.9E-31 246.5 8.1 191 446-660 227-445 (454)
129 2c30_A Serine/threonine-protei 99.9 8.6E-26 2.9E-30 231.5 11.3 182 448-652 88-294 (321)
130 3og7_A AKAP9-BRAF fusion prote 99.9 3.5E-26 1.2E-30 230.9 8.3 192 447-658 65-287 (289)
131 2yab_A Death-associated protei 99.9 7.5E-26 2.6E-30 234.9 10.5 185 447-652 60-272 (361)
132 2bdw_A Hypothetical protein K1 99.9 7.7E-26 2.6E-30 235.5 10.2 185 447-652 73-284 (362)
133 1u59_A Tyrosine-protein kinase 99.9 9E-26 3.1E-30 227.7 10.3 194 447-664 55-277 (287)
134 2x4f_A Myosin light chain kina 99.9 5.1E-26 1.7E-30 237.8 8.8 191 447-657 131-349 (373)
135 1kob_A Twitchin; kinase, intra 99.9 8.3E-26 2.8E-30 236.8 10.3 185 448-652 94-304 (387)
136 1mqb_A Ephrin type-A receptor 99.9 8.9E-26 3E-30 232.7 10.4 190 448-660 92-310 (333)
137 3zgw_A Maternal embryonic leuc 99.9 4.5E-26 1.5E-30 235.1 8.1 181 447-652 53-260 (347)
138 3cc6_A Protein tyrosine kinase 99.9 1.5E-25 5.1E-30 225.4 11.6 191 447-661 58-275 (281)
139 1csn_A Casein kinase-1; phosph 99.9 1.6E-25 5.5E-30 227.2 11.9 198 447-662 50-286 (298)
140 1b6c_B TGF-B superfamily recep 99.9 3.1E-25 1.1E-29 229.8 14.2 204 448-661 80-338 (342)
141 3fe3_A MAP/microtubule affinit 99.9 3.8E-26 1.3E-30 234.3 7.2 181 447-652 59-264 (328)
142 2i1m_A Macrophage colony-stimu 99.9 1.3E-25 4.4E-30 231.7 11.1 195 447-663 94-330 (333)
143 3tki_A Serine/threonine-protei 99.9 7.7E-26 2.6E-30 231.9 9.3 184 447-652 50-261 (323)
144 3pls_A Macrophage-stimulating 99.9 2.8E-25 9.7E-30 225.3 13.4 195 447-663 67-291 (298)
145 3f66_A Hepatocyte growth facto 99.9 2E-25 6.7E-30 226.5 11.9 193 447-662 71-294 (298)
146 2y0a_A Death-associated protei 99.9 1.1E-25 3.8E-30 231.1 10.1 185 447-652 59-271 (326)
147 3soa_A Calcium/calmodulin-depe 99.9 1.4E-25 4.8E-30 239.1 10.9 185 447-652 55-267 (444)
148 3c0i_A Peripheral plasma membr 99.9 1.1E-25 3.8E-30 233.6 9.6 185 447-652 71-286 (351)
149 3lzb_A Epidermal growth factor 99.9 2E-25 7E-30 229.3 11.5 190 447-660 62-279 (327)
150 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-23 5.3E-28 231.3 27.1 267 75-398 40-306 (622)
151 2w4o_A Calcium/calmodulin-depe 99.9 1.2E-25 4.2E-30 233.0 9.8 186 447-652 93-305 (349)
152 4eqm_A Protein kinase; transfe 99.9 1.2E-25 4E-30 227.5 9.4 193 447-659 56-275 (294)
153 1fmk_A C-SRC, P60-SRC, tyrosin 99.9 6.7E-26 2.3E-30 243.3 7.6 190 447-660 224-441 (452)
154 2pvf_A Fibroblast growth facto 99.9 1.6E-25 5.5E-30 231.0 10.2 192 447-661 85-320 (334)
155 3gxj_A TGF-beta receptor type- 99.9 8.2E-27 2.8E-31 237.3 0.4 203 449-661 42-299 (303)
156 2izr_A Casein kinase I isoform 99.9 2.3E-25 7.9E-30 229.4 11.2 197 447-661 49-283 (330)
157 3gni_B Strad alpha; kinase fol 99.9 1.3E-25 4.4E-30 236.9 9.4 201 447-652 71-333 (389)
158 3dtc_A Mitogen-activated prote 99.9 4.4E-26 1.5E-30 227.9 5.4 190 447-657 51-271 (271)
159 2y4i_B KSR2, HKSR2, kinase sup 99.9 5.9E-25 2E-29 225.4 13.6 194 446-661 73-304 (319)
160 2z62_A TOLL-like receptor 4, v 99.9 8.3E-24 2.8E-28 211.9 21.3 223 79-306 11-238 (276)
161 3g2f_A Bone morphogenetic prot 99.9 9E-26 3.1E-30 233.2 7.1 203 452-663 57-322 (336)
162 4euu_A Serine/threonine-protei 99.9 6.3E-25 2.1E-29 225.1 13.3 206 448-657 53-307 (319)
163 3brb_A Proto-oncogene tyrosine 99.9 3.8E-25 1.3E-29 226.1 11.6 194 447-663 81-312 (313)
164 2v62_A Serine/threonine-protei 99.9 8.3E-26 2.9E-30 234.2 6.3 197 448-659 94-328 (345)
165 1o6l_A RAC-beta serine/threoni 99.9 3.1E-25 1.1E-29 228.1 10.4 180 448-652 51-260 (337)
166 4fl3_A Tyrosine-protein kinase 99.9 1.8E-25 6E-30 249.1 8.9 190 447-661 415-633 (635)
167 4e5w_A Tyrosine-protein kinase 99.9 6.4E-26 2.2E-30 230.6 4.9 201 447-658 68-301 (302)
168 2w1i_A JAK2; chromosomal rearr 99.9 5.7E-26 2E-30 233.5 4.6 205 447-661 87-324 (326)
169 1fvr_A Tyrosine-protein kinase 99.9 3.1E-25 1.1E-29 228.2 10.1 192 447-661 70-302 (327)
170 1p4o_A Insulin-like growth fac 99.9 2E-25 6.9E-30 229.1 8.5 193 448-663 74-303 (322)
171 3qup_A Tyrosine-protein kinase 99.9 2.5E-25 8.6E-30 228.5 9.2 192 447-661 70-300 (323)
172 2wqm_A Serine/threonine-protei 99.9 3.5E-25 1.2E-29 226.0 10.2 195 447-661 77-299 (310)
173 2yfx_A Tyrosine-protein kinase 99.9 4.4E-25 1.5E-29 227.0 10.9 191 447-660 78-305 (327)
174 1xbb_A Tyrosine-protein kinase 99.9 2.3E-25 8E-30 225.1 8.7 192 447-663 63-283 (291)
175 3kfa_A Tyrosine-protein kinase 99.9 2.9E-25 1E-29 224.1 9.4 191 447-660 54-272 (288)
176 3rfs_A Internalin B, repeat mo 99.9 5.1E-24 1.8E-28 212.7 17.9 203 52-266 42-244 (272)
177 3niz_A Rhodanese family protei 99.9 5.8E-25 2E-29 224.3 11.0 199 448-652 65-300 (311)
178 3h4j_B AMPK kdaid, SNF1-like p 99.9 2.7E-25 9.3E-30 228.3 8.3 179 448-652 55-258 (336)
179 2qr7_A Ribosomal protein S6 ki 99.9 6.1E-25 2.1E-29 226.7 10.9 185 449-652 62-277 (342)
180 1byg_A CSK, protein (C-termina 99.9 3.5E-25 1.2E-29 222.3 8.8 192 447-661 59-275 (278)
181 3cok_A Serine/threonine-protei 99.9 2.6E-25 8.9E-30 223.2 7.9 182 447-652 56-262 (278)
182 2xir_A Vascular endothelial gr 99.9 4.9E-25 1.7E-29 225.6 10.1 193 447-661 75-312 (316)
183 4fr4_A YANK1, serine/threonine 99.9 7.4E-25 2.5E-29 228.7 11.4 182 447-651 60-270 (384)
184 3ogk_B Coronatine-insensitive 99.9 9.7E-27 3.3E-31 259.9 -3.2 201 73-276 110-326 (592)
185 2jii_A Serine/threonine-protei 99.9 2.3E-25 7.8E-30 231.6 7.2 200 448-661 88-338 (352)
186 4hgt_A Casein kinase I isoform 99.9 1.2E-24 4.3E-29 220.3 12.0 195 448-661 50-282 (296)
187 2h8h_A Proto-oncogene tyrosine 99.9 2E-25 7E-30 244.4 6.6 189 447-659 307-523 (535)
188 2o6q_A Variable lymphocyte rec 99.9 3.8E-23 1.3E-27 206.2 22.5 202 76-305 17-218 (270)
189 3kn6_A Ribosomal protein S6 ki 99.9 5E-25 1.7E-29 226.1 8.9 189 448-652 51-270 (325)
190 3uc3_A Serine/threonine-protei 99.9 8.3E-25 2.8E-29 227.7 10.7 186 448-652 62-274 (361)
191 3mtl_A Cell division protein k 99.9 7.6E-25 2.6E-29 224.8 10.2 198 448-652 46-281 (324)
192 1fot_A TPK1 delta, CAMP-depend 99.9 9.7E-25 3.3E-29 222.8 10.9 180 448-652 52-258 (318)
193 1nxk_A MAP kinase-activated pr 99.9 1.4E-24 4.8E-29 229.1 12.4 186 449-652 101-321 (400)
194 3uzp_A CKI-delta, CKID, casein 99.9 1.5E-24 5E-29 219.8 12.1 195 448-661 50-282 (296)
195 3i6u_A CDS1, serine/threonine- 99.9 1E-24 3.6E-29 231.7 11.3 185 447-652 185-399 (419)
196 3rfs_A Internalin B, repeat mo 99.9 3.5E-24 1.2E-28 214.0 14.4 224 55-292 23-246 (272)
197 1u5q_A Serine/threonine protei 99.9 3.2E-25 1.1E-29 229.5 7.1 183 447-652 99-305 (348)
198 1ob3_A PFPK5, cell division co 99.9 4.3E-25 1.5E-29 222.8 7.8 199 448-652 46-280 (288)
199 3lxp_A Non-receptor tyrosine-p 99.9 1.5E-25 5.2E-30 229.5 4.5 202 447-663 78-314 (318)
200 1u46_A ACK-1, activated CDC42 99.9 2E-25 6.8E-30 225.7 5.2 191 447-660 66-285 (291)
201 3m19_A Variable lymphocyte rec 99.9 1.2E-23 4.1E-28 207.5 17.8 192 37-234 3-194 (251)
202 2y94_A 5'-AMP-activated protei 99.9 1E-24 3.6E-29 233.9 10.8 180 448-652 62-266 (476)
203 2zv2_A Calcium/calmodulin-depe 99.9 2.3E-25 7.7E-30 226.1 5.3 182 447-652 81-292 (298)
204 3lxl_A Tyrosine-protein kinase 99.9 4.4E-25 1.5E-29 227.1 7.4 197 447-661 69-305 (327)
205 3dls_A PAS domain-containing s 99.9 9.8E-25 3.4E-29 224.8 9.9 176 447-653 74-275 (335)
206 2buj_A Serine/threonine-protei 99.9 9.5E-25 3.2E-29 223.6 9.7 194 447-661 71-308 (317)
207 2a19_B Interferon-induced, dou 99.9 1E-24 3.5E-29 219.5 9.8 187 448-662 50-277 (284)
208 2j0j_A Focal adhesion kinase 1 99.9 9.2E-25 3.1E-29 244.2 10.4 190 447-660 436-652 (656)
209 1rdq_E PKA C-alpha, CAMP-depen 99.9 7E-25 2.4E-29 226.9 8.6 180 448-652 87-293 (350)
210 4eut_A Serine/threonine-protei 99.9 9.1E-25 3.1E-29 230.7 9.6 209 448-660 53-310 (396)
211 1qpc_A LCK kinase; alpha beta 99.9 1.2E-24 4.2E-29 218.4 10.0 192 447-662 53-272 (279)
212 1p9a_G Platelet glycoprotein I 99.9 3.7E-23 1.3E-27 208.2 20.8 201 71-279 6-206 (290)
213 2a2a_A Death-associated protei 99.9 1.4E-24 4.7E-29 222.7 10.3 185 447-652 60-272 (321)
214 2yex_A Serine/threonine-protei 99.9 1.6E-24 5.5E-29 217.1 10.5 184 447-652 50-261 (276)
215 4dc2_A Protein kinase C IOTA t 99.9 1.1E-24 3.8E-29 228.2 9.6 181 448-647 98-307 (396)
216 3kk8_A Calcium/calmodulin depe 99.9 1.4E-24 4.8E-29 218.6 9.5 185 447-652 50-261 (284)
217 4ejn_A RAC-alpha serine/threon 99.9 8.4E-25 2.9E-29 234.7 8.1 182 447-652 193-404 (446)
218 3bhy_A Death-associated protei 99.9 1.3E-24 4.4E-29 218.7 8.9 193 447-660 53-275 (283)
219 2h34_A Serine/threonine-protei 99.9 5.9E-25 2E-29 224.1 6.5 193 447-661 79-298 (309)
220 2zmd_A Dual specificity protei 99.9 9.4E-25 3.2E-29 229.7 8.0 183 447-652 99-320 (390)
221 3o0g_A Cell division protein k 99.9 1.3E-24 4.4E-29 219.8 8.6 200 448-652 47-282 (292)
222 4aw2_A Serine/threonine-protei 99.9 6.5E-25 2.2E-29 233.1 6.7 187 447-652 119-338 (437)
223 3fdn_A Serine/threonine-protei 99.9 1.7E-24 5.7E-29 217.4 9.4 180 448-652 55-257 (279)
224 3f3z_A Calcium/calmodulin-depe 99.9 1.3E-24 4.6E-29 217.9 8.7 184 447-652 51-261 (277)
225 2j7t_A Serine/threonine-protei 99.9 6.7E-25 2.3E-29 223.1 6.3 185 447-652 61-275 (302)
226 3txo_A PKC-L, NPKC-ETA, protei 99.9 6.2E-25 2.1E-29 227.5 5.9 175 448-647 69-269 (353)
227 3dbq_A Dual specificity protei 99.9 8.4E-25 2.9E-29 226.4 6.9 183 447-652 52-273 (343)
228 2vwi_A Serine/threonine-protei 99.9 1E-24 3.5E-29 221.8 7.3 191 447-652 58-287 (303)
229 1xjd_A Protein kinase C, theta 99.9 6.3E-25 2.2E-29 226.5 5.8 178 449-651 64-268 (345)
230 3a62_A Ribosomal protein S6 ki 99.9 1.6E-24 5.5E-29 222.6 8.8 180 448-652 67-276 (327)
231 3v8s_A RHO-associated protein 99.9 5.3E-25 1.8E-29 231.9 5.2 183 448-652 115-329 (410)
232 2pmi_A Negative RE, cyclin-dep 99.9 1.5E-24 5E-29 222.0 8.2 199 448-652 49-293 (317)
233 3lij_A Calcium/calmodulin depe 99.9 2.6E-24 8.7E-29 234.0 10.5 183 448-652 82-291 (494)
234 3is5_A Calcium-dependent prote 99.9 1.2E-24 4.1E-29 219.2 7.2 184 447-652 65-278 (285)
235 3p1a_A MYT1 kinase, membrane-a 99.9 1.8E-24 6.3E-29 220.6 8.7 175 451-652 105-304 (311)
236 3ork_A Serine/threonine protei 99.9 4E-25 1.4E-29 225.7 3.7 190 448-658 58-280 (311)
237 1t4h_A Serine/threonine-protei 99.9 1.9E-24 6.6E-29 218.3 8.4 185 447-652 70-282 (290)
238 3mwu_A Calmodulin-domain prote 99.9 3.1E-24 1.1E-28 233.0 10.5 183 448-652 67-276 (486)
239 3hko_A Calcium/calmodulin-depe 99.9 1.5E-24 5.3E-29 224.8 7.7 186 447-652 73-330 (345)
240 3com_A Serine/threonine-protei 99.9 2.8E-24 9.5E-29 219.8 9.5 185 447-652 69-278 (314)
241 3nyv_A Calmodulin-domain prote 99.9 1.8E-24 6.2E-29 234.8 8.5 184 447-652 71-281 (484)
242 3a8x_A Protein kinase C IOTA t 99.9 1.6E-24 5.6E-29 223.8 7.7 181 448-647 55-264 (345)
243 2r5t_A Serine/threonine-protei 99.9 1.5E-24 5.2E-29 226.0 7.2 181 449-654 85-291 (373)
244 2ac3_A MAP kinase-interacting 99.9 1.9E-24 6.6E-29 221.2 7.8 186 448-652 56-295 (316)
245 3q5i_A Protein kinase; CDPK, m 99.9 2.5E-24 8.5E-29 234.7 9.2 184 447-652 91-301 (504)
246 2acx_A G protein-coupled recep 99.9 2.6E-24 8.7E-29 233.9 9.1 183 448-652 230-444 (576)
247 2vd5_A DMPK protein; serine/th 99.9 2.4E-24 8.1E-29 227.1 8.5 186 447-652 106-327 (412)
248 2i0e_A Protein kinase C-beta I 99.9 3.2E-24 1.1E-28 221.9 9.4 175 448-647 66-266 (353)
249 3q60_A ROP5B; pseudokinase, tr 99.9 8.9E-25 3.1E-29 228.8 5.2 173 476-664 162-366 (371)
250 2jam_A Calcium/calmodulin-depe 99.9 3.2E-24 1.1E-28 218.3 9.1 184 448-652 52-261 (304)
251 3gbz_A Kinase, CMGC CDK; ssgci 99.9 2.6E-24 8.9E-29 221.4 8.4 199 447-652 78-318 (329)
252 3llt_A Serine/threonine kinase 99.9 2.5E-24 8.4E-29 224.7 8.3 132 448-584 77-261 (360)
253 3eqc_A Dual specificity mitoge 99.9 1.5E-24 5.2E-29 226.2 6.6 134 447-584 76-232 (360)
254 2eue_A Carbon catabolite derep 99.9 2.1E-24 7.2E-29 216.2 7.3 179 448-652 59-262 (275)
255 2vgo_A Serine/threonine-protei 99.9 3.9E-24 1.4E-28 215.3 9.0 180 448-652 60-262 (284)
256 3g33_A Cell division protein k 99.9 4.7E-24 1.6E-28 217.4 9.5 198 449-652 58-296 (308)
257 2w5a_A Serine/threonine-protei 99.9 2.3E-24 7.9E-29 216.4 7.0 189 447-654 50-269 (279)
258 3a7i_A MST3 kinase, serine/thr 99.9 5.1E-24 1.7E-28 216.7 9.6 181 447-652 65-270 (303)
259 2pml_X PFPK7, Ser/Thr protein 99.9 2.7E-24 9.2E-29 223.3 7.4 200 447-652 88-322 (348)
260 4agu_A Cyclin-dependent kinase 99.9 3.5E-24 1.2E-28 218.7 7.9 196 448-652 48-284 (311)
261 2clq_A Mitogen-activated prote 99.9 3.5E-24 1.2E-28 216.9 7.8 185 447-652 64-278 (295)
262 2y7j_A Phosphorylase B kinase 99.9 6.8E-24 2.3E-28 221.3 10.0 184 448-652 145-359 (365)
263 3ogk_B Coronatine-insensitive 99.9 1.8E-25 6E-30 249.7 -2.3 377 51-437 112-526 (592)
264 3c4z_A Rhodopsin kinase; Ser/T 99.9 7.1E-24 2.4E-28 230.0 10.3 180 448-647 231-438 (543)
265 2ycf_A Serine/threonine-protei 99.9 6.3E-24 2.2E-28 217.9 9.4 185 447-652 60-274 (322)
266 3sv0_A Casein kinase I-like; t 99.9 6.1E-24 2.1E-28 228.3 9.3 194 448-660 48-279 (483)
267 3qd2_B Eukaryotic translation 99.9 8.2E-24 2.8E-28 218.0 9.8 181 447-652 49-325 (332)
268 2rku_A Serine/threonine-protei 99.9 2.8E-24 9.5E-29 217.6 5.8 181 447-652 60-265 (294)
269 1p9a_G Platelet glycoprotein I 99.9 4E-22 1.4E-26 200.6 21.5 203 94-304 5-207 (290)
270 1ua2_A CAK, cell division prot 99.9 4.3E-24 1.5E-28 221.4 7.3 199 448-652 58-291 (346)
271 3eb0_A Putative uncharacterize 99.9 1E-23 3.5E-28 221.7 10.2 198 449-652 47-321 (383)
272 2owb_A Serine/threonine-protei 99.9 3.3E-24 1.1E-28 221.2 6.3 181 447-652 86-291 (335)
273 1j1b_A Glycogen synthase kinas 99.9 1E-23 3.6E-28 224.1 10.3 198 449-652 94-336 (420)
274 3lm5_A Serine/threonine-protei 99.9 7.2E-24 2.4E-28 217.9 8.5 185 448-652 74-287 (327)
275 2h6d_A 5'-AMP-activated protei 99.9 6.2E-24 2.1E-28 212.9 7.7 180 448-652 57-261 (276)
276 1vzo_A Ribosomal protein S6 ki 99.9 8.2E-24 2.8E-28 219.9 8.8 185 447-652 103-321 (355)
277 3byv_A Rhoptry kinase; malaria 99.9 1.7E-24 5.9E-29 227.1 3.7 185 447-661 118-370 (377)
278 3e7e_A HBUB1, BUB1A, mitotic c 99.9 2.3E-23 7.9E-28 217.6 12.0 186 448-661 110-341 (365)
279 3ttj_A Mitogen-activated prote 99.9 2.8E-23 9.6E-28 223.1 12.8 195 447-652 106-355 (464)
280 3fme_A Dual specificity mitoge 99.9 8.6E-24 2.9E-28 213.5 8.2 180 452-652 56-266 (290)
281 4aaa_A Cyclin-dependent kinase 99.9 5E-24 1.7E-28 219.6 6.6 199 448-652 70-306 (331)
282 3ll6_A Cyclin G-associated kin 99.9 6.6E-24 2.3E-28 219.2 7.2 189 447-660 70-309 (337)
283 4glp_A Monocyte differentiatio 99.9 2.2E-23 7.7E-28 212.4 11.0 226 75-306 64-308 (310)
284 1cm8_A Phosphorylated MAP kina 99.9 1.5E-23 5E-28 218.8 9.8 197 447-652 69-307 (367)
285 1x8b_A WEE1HU, WEE1-like prote 99.9 1.2E-23 4E-28 212.2 8.5 180 447-652 55-279 (289)
286 3nsz_A CK II alpha, casein kin 99.9 8.1E-24 2.8E-28 218.0 7.4 198 447-652 75-319 (330)
287 3p23_A Serine/threonine-protei 99.9 1.4E-23 4.9E-28 223.3 9.3 183 448-652 63-283 (432)
288 3an0_A Dual specificity mitoge 99.9 1E-23 3.5E-28 218.2 7.9 181 451-652 98-310 (340)
289 2xwt_C Thyrotropin receptor; s 99.9 1.5E-22 5.2E-27 198.0 15.3 196 76-278 32-236 (239)
290 2r3i_A Cell division protein k 99.9 1.4E-23 4.7E-28 213.0 8.0 199 448-652 48-283 (299)
291 3goz_A Leucine-rich repeat-con 99.9 3E-24 1E-28 223.8 3.1 267 56-344 3-304 (362)
292 4e7w_A Glycogen synthase kinas 99.9 1.7E-23 5.8E-28 220.6 8.4 198 449-652 79-321 (394)
293 3kvw_A DYRK2, dual specificity 99.9 2.8E-23 9.6E-28 221.2 9.9 133 448-585 139-302 (429)
294 1phk_A Phosphorylase kinase; g 99.9 2E-23 6.7E-28 211.7 8.2 184 448-652 69-283 (298)
295 3uqc_A Probable conserved tran 99.9 2.3E-23 7.9E-28 209.4 8.4 186 447-660 76-266 (286)
296 2xwt_C Thyrotropin receptor; s 99.9 2.6E-22 9E-27 196.3 15.5 194 100-300 32-234 (239)
297 3pfq_A PKC-B, PKC-beta, protei 99.9 3.2E-23 1.1E-27 232.4 10.2 174 449-647 388-587 (674)
298 3oz6_A Mitogen-activated prote 99.9 1.6E-23 5.6E-28 220.6 7.2 197 448-652 54-328 (388)
299 3mi9_A Cell division protein k 99.9 5.2E-23 1.8E-27 213.8 10.8 198 448-652 62-311 (351)
300 2vx3_A Dual specificity tyrosi 99.9 4.8E-23 1.7E-27 216.5 10.6 133 449-584 97-260 (382)
301 2xrw_A Mitogen-activated prote 99.9 7.5E-23 2.5E-27 214.1 12.0 194 447-652 69-318 (371)
302 1wak_A Serine/threonine-protei 99.9 2.6E-23 8.8E-28 220.0 8.4 202 447-652 78-391 (397)
303 3pg1_A Mitogen-activated prote 99.9 3E-23 1E-27 216.6 8.7 200 447-652 74-316 (362)
304 2wei_A Calmodulin-domain prote 99.9 2.6E-23 8.7E-28 209.7 7.7 184 447-652 66-276 (287)
305 4glp_A Monocyte differentiatio 99.9 1.3E-22 4.6E-27 206.6 12.7 226 99-338 64-308 (310)
306 3fhr_A MAP kinase-activated pr 99.9 2.2E-23 7.5E-28 215.0 6.9 182 455-652 75-287 (336)
307 2rio_A Serine/threonine-protei 99.9 3.4E-23 1.2E-27 221.1 8.6 184 449-652 55-295 (434)
308 2ast_B S-phase kinase-associat 99.9 2.8E-24 9.4E-29 222.0 0.1 235 38-302 36-282 (336)
309 2fst_X Mitogen-activated prote 99.9 2.6E-23 8.7E-28 216.8 7.2 197 447-652 73-311 (367)
310 2ca6_A RAN GTPase-activating p 99.9 4E-24 1.4E-28 225.2 1.1 245 67-340 24-319 (386)
311 1blx_A Cyclin-dependent kinase 99.9 6.3E-23 2.2E-27 210.9 10.0 199 448-652 57-296 (326)
312 2x7f_A TRAF2 and NCK-interacti 99.9 2.6E-23 8.9E-28 213.7 7.1 184 447-652 65-286 (326)
313 1z57_A Dual specificity protei 99.9 4.3E-23 1.5E-27 213.2 8.7 198 448-652 57-328 (339)
314 3cek_A Dual specificity protei 99.9 3.4E-23 1.2E-27 211.5 7.8 183 447-652 71-292 (313)
315 3qyz_A Mitogen-activated prote 99.9 5.8E-23 2E-27 214.5 9.4 197 447-652 70-313 (364)
316 2wtk_C Serine/threonine-protei 99.9 7.8E-23 2.7E-27 208.1 8.9 181 447-652 51-263 (305)
317 3rp9_A Mitogen-activated prote 99.9 8.9E-23 3.1E-27 219.9 9.8 126 447-578 97-280 (458)
318 3rgf_A Cyclin-dependent kinase 99.9 1.1E-22 3.7E-27 215.6 10.2 200 448-652 64-333 (405)
319 1q8y_A SR protein kinase; tran 99.9 1.7E-22 5.9E-27 211.8 11.4 201 448-652 61-333 (373)
320 4exu_A Mitogen-activated prote 99.9 9.3E-23 3.2E-27 213.3 9.1 197 447-652 86-323 (371)
321 3cvr_A Invasion plasmid antige 99.9 2.7E-22 9.2E-27 218.7 12.7 215 27-290 32-252 (571)
322 3m19_A Variable lymphocyte rec 99.9 3E-21 1E-25 190.3 19.0 177 76-256 15-191 (251)
323 2eu9_A Dual specificity protei 99.9 1.1E-22 3.6E-27 211.8 8.9 198 448-652 62-333 (355)
324 3n9x_A Phosphotransferase; mal 99.9 1.6E-22 5.6E-27 215.8 10.1 131 447-583 70-253 (432)
325 3qa8_A MGC80376 protein; kinas 99.9 1.4E-22 4.8E-27 222.4 9.7 196 447-650 57-295 (676)
326 2i6l_A Mitogen-activated prote 99.9 9E-23 3.1E-27 209.1 7.5 197 447-652 53-305 (320)
327 1zy4_A Serine/threonine-protei 99.9 8.2E-23 2.8E-27 207.6 6.5 184 447-652 47-283 (303)
328 2dyl_A Dual specificity mitoge 99.9 5.3E-23 1.8E-27 210.6 4.9 181 452-652 74-283 (318)
329 2b9h_A MAP kinase FUS3, mitoge 99.9 2.2E-22 7.4E-27 209.3 9.5 197 448-652 55-305 (353)
330 2ca6_A RAN GTPase-activating p 99.9 1.7E-23 5.7E-28 220.4 1.1 234 51-284 32-319 (386)
331 2iwi_A Serine/threonine-protei 99.9 1.8E-22 6.1E-27 206.1 8.6 175 447-652 79-283 (312)
332 3goz_A Leucine-rich repeat-con 99.9 2.9E-23 9.8E-28 216.5 2.5 269 79-372 2-304 (362)
333 2ast_B S-phase kinase-associat 99.9 4.2E-23 1.5E-27 213.1 3.5 255 77-374 49-315 (336)
334 3a99_A Proto-oncogene serine/t 99.9 1E-22 3.5E-27 208.5 6.2 175 447-652 91-293 (320)
335 3e3p_A Protein kinase, putativ 99.9 5.3E-22 1.8E-26 207.0 11.7 200 449-652 66-314 (360)
336 3coi_A Mitogen-activated prote 99.9 2.2E-22 7.6E-27 209.2 8.4 197 447-652 68-305 (353)
337 3aln_A Dual specificity mitoge 99.9 4.6E-23 1.6E-27 212.0 2.4 184 451-652 69-285 (327)
338 2o6s_A Variable lymphocyte rec 99.9 1.6E-21 5.4E-26 186.4 12.8 181 38-240 6-186 (208)
339 1h6u_A Internalin H; cell adhe 99.9 2.8E-21 9.4E-26 196.4 15.2 192 72-280 38-229 (308)
340 2pzi_A Probable serine/threoni 99.9 5E-22 1.7E-26 224.4 9.6 179 448-660 125-329 (681)
341 2o6s_A Variable lymphocyte rec 99.8 1E-20 3.5E-25 180.7 16.3 181 78-269 10-190 (208)
342 1h6u_A Internalin H; cell adhe 99.8 1.1E-20 3.6E-25 192.1 17.3 191 51-258 41-231 (308)
343 2p1m_B Transport inhibitor res 99.8 5.8E-24 2E-28 237.5 -7.8 375 51-436 66-518 (594)
344 4ay9_X Follicle-stimulating ho 99.8 4.5E-21 1.6E-25 198.7 14.5 200 56-259 14-217 (350)
345 3m2w_A MAP kinase-activated pr 99.8 3E-21 1E-25 195.6 9.6 188 449-652 57-256 (299)
346 4ay9_X Follicle-stimulating ho 99.8 1.3E-20 4.3E-25 195.4 14.4 235 39-279 9-257 (350)
347 3cvr_A Invasion plasmid antige 99.8 6.7E-20 2.3E-24 199.8 17.6 181 76-307 60-245 (571)
348 4b8c_D Glucose-repressible alc 99.8 1.7E-21 5.8E-26 220.4 2.8 217 8-236 131-358 (727)
349 2p1m_B Transport inhibitor res 99.8 2.1E-22 7.1E-27 224.9 -4.9 376 51-434 105-541 (594)
350 3e6j_A Variable lymphocyte rec 99.8 2.1E-19 7E-24 174.2 15.9 162 32-209 12-173 (229)
351 3dzo_A Rhoptry kinase domain; 99.8 1.5E-20 5E-25 199.3 4.7 145 478-652 181-363 (413)
352 2v9t_B SLIT homolog 2 protein 99.8 7.6E-19 2.6E-23 169.0 15.5 152 54-208 14-165 (220)
353 2v70_A SLIT-2, SLIT homolog 2 99.8 8.8E-19 3E-23 168.5 15.7 153 54-209 14-167 (220)
354 2xot_A Amphoterin-induced prot 99.8 4.1E-19 1.4E-23 184.8 14.1 176 54-232 21-202 (361)
355 2v70_A SLIT-2, SLIT homolog 2 99.8 7.6E-19 2.6E-23 169.0 14.8 156 78-236 14-170 (220)
356 2v9t_B SLIT homolog 2 protein 99.8 1.1E-18 3.7E-23 167.9 15.8 152 78-232 14-165 (220)
357 1dce_A Protein (RAB geranylger 99.8 2.7E-21 9.4E-26 211.9 -4.4 190 72-285 346-550 (567)
358 2xot_A Amphoterin-induced prot 99.8 1.4E-18 4.6E-23 180.8 15.9 175 78-256 21-201 (361)
359 1h6t_A Internalin B; cell adhe 99.8 8.7E-19 3E-23 176.3 13.9 185 56-257 29-213 (291)
360 1m9s_A Internalin B; cell inva 99.8 1.1E-18 3.7E-23 192.5 14.4 172 72-258 40-211 (605)
361 1h6t_A Internalin B; cell adhe 99.8 1.9E-18 6.6E-23 173.8 14.9 169 51-233 46-214 (291)
362 3e6j_A Variable lymphocyte rec 99.8 4.8E-18 1.7E-22 164.5 16.8 155 77-235 21-175 (229)
363 1m9s_A Internalin B; cell inva 99.8 2.5E-18 8.5E-23 189.6 12.9 193 74-283 20-212 (605)
364 4ezg_A Putative uncharacterize 99.7 3.7E-18 1.3E-22 161.3 11.4 153 72-231 41-193 (197)
365 4b8c_D Glucose-repressible alc 99.7 6.3E-19 2.2E-23 199.3 5.4 219 75-305 173-404 (727)
366 4ezg_A Putative uncharacterize 99.7 9.7E-18 3.3E-22 158.4 10.8 152 51-209 44-195 (197)
367 1dce_A Protein (RAB geranylger 99.7 5.5E-20 1.9E-24 201.6 -6.8 206 96-330 346-566 (567)
368 1xeu_A Internalin C; cellular 99.7 2.9E-17 9.9E-22 162.5 11.4 165 53-232 21-185 (263)
369 2vuw_A Serine/threonine-protei 99.7 1.4E-18 5E-23 179.0 1.1 167 461-651 108-329 (336)
370 1w8a_A SLIT protein; signaling 99.7 1.4E-16 4.6E-21 149.7 13.7 129 54-209 11-140 (192)
371 1xeu_A Internalin C; cellular 99.7 1.6E-17 5.6E-22 164.3 7.1 169 73-257 17-185 (263)
372 1w8a_A SLIT protein; signaling 99.7 1.3E-16 4.4E-21 149.8 11.7 114 124-237 30-144 (192)
373 2ell_A Acidic leucine-rich nuc 99.7 1.8E-16 6.1E-21 145.6 9.0 130 76-207 25-159 (168)
374 2ell_A Acidic leucine-rich nuc 99.6 3.1E-16 1.1E-20 143.9 10.1 133 97-231 22-159 (168)
375 2je0_A Acidic leucine-rich nuc 99.6 1.4E-16 4.8E-21 143.0 6.5 125 76-202 18-147 (149)
376 2wfh_A SLIT homolog 2 protein 99.6 2.5E-15 8.6E-20 141.0 13.6 126 55-208 14-139 (193)
377 2je0_A Acidic leucine-rich nuc 99.6 3.3E-16 1.1E-20 140.6 6.8 128 51-180 17-149 (149)
378 2o6r_A Variable lymphocyte rec 99.6 4.3E-15 1.5E-19 137.5 13.4 127 56-209 12-138 (177)
379 2wfh_A SLIT homolog 2 protein 99.6 4.3E-15 1.5E-19 139.4 12.7 109 51-160 31-139 (193)
380 4azs_A Methyltransferase WBDD; 99.6 8.8E-17 3E-21 176.2 -0.4 127 446-581 285-437 (569)
381 2o6r_A Variable lymphocyte rec 99.6 1.3E-14 4.4E-19 134.3 13.7 113 124-236 29-141 (177)
382 3sb4_A Hypothetical leucine ri 99.6 5.1E-15 1.7E-19 151.8 9.7 92 243-344 225-317 (329)
383 3sb4_A Hypothetical leucine ri 99.5 1.1E-14 3.9E-19 149.1 9.3 260 52-331 26-328 (329)
384 1a9n_A U2A', U2A'; complex (nu 99.5 9.6E-15 3.3E-19 135.0 7.4 85 71-159 15-100 (176)
385 1ds9_A Outer arm dynein; leuci 99.5 5.9E-17 2E-21 153.1 -9.3 132 52-188 19-157 (198)
386 1ds9_A Outer arm dynein; leuci 99.5 5.1E-17 1.8E-21 153.5 -10.1 133 71-208 14-153 (198)
387 1a9n_A U2A', U2A'; complex (nu 99.5 4.8E-14 1.6E-18 130.3 8.1 132 94-231 14-152 (176)
388 3g39_A Variable lymphocyte rec 99.4 2.6E-13 9.1E-18 124.3 10.7 105 54-161 12-116 (170)
389 4fdw_A Leucine rich hypothetic 99.4 5.2E-12 1.8E-16 132.2 20.9 264 53-337 115-383 (401)
390 3g39_A Variable lymphocyte rec 99.4 5E-13 1.7E-17 122.5 11.3 106 78-210 12-117 (170)
391 2r9u_A Variable lymphocyte rec 99.4 5.1E-13 1.7E-17 122.8 10.8 104 54-160 15-118 (174)
392 4fdw_A Leucine rich hypothetic 99.4 1.4E-11 4.8E-16 128.9 22.9 251 72-344 110-365 (401)
393 2r9u_A Variable lymphocyte rec 99.4 7.7E-13 2.6E-17 121.6 11.2 105 78-209 15-119 (174)
394 3en9_A Glycoprotease, O-sialog 99.3 2.9E-13 9.9E-18 147.5 -0.4 123 448-583 385-539 (540)
395 2ifg_A High affinity nerve gro 99.2 1.6E-11 5.5E-16 126.7 10.3 103 56-161 13-117 (347)
396 3un9_A NLR family member X1; l 99.2 5.1E-13 1.8E-17 138.5 -3.7 111 74-184 71-196 (372)
397 2ifg_A High affinity nerve gro 99.2 3.2E-11 1.1E-15 124.4 9.8 103 80-209 13-117 (347)
398 4fs7_A Uncharacterized protein 99.2 1.8E-09 6E-14 113.3 22.4 312 68-433 64-375 (394)
399 3un9_A NLR family member X1; l 99.2 8.2E-13 2.8E-17 136.9 -4.7 158 51-208 72-252 (372)
400 4fs7_A Uncharacterized protein 99.1 1E-08 3.4E-13 107.6 21.9 295 87-434 59-353 (394)
401 2ra8_A Uncharacterized protein 98.9 5.9E-10 2E-14 114.4 3.0 102 51-155 107-227 (362)
402 4gt6_A Cell surface protein; l 98.8 2.1E-06 7.3E-11 89.7 26.4 316 69-435 57-389 (394)
403 2ra8_A Uncharacterized protein 98.7 4.1E-09 1.4E-13 108.2 2.9 132 170-303 192-341 (362)
404 3rw6_A Nuclear RNA export fact 98.6 1.1E-09 3.8E-14 106.5 -4.4 79 121-201 168-257 (267)
405 4gt6_A Cell surface protein; l 98.5 5E-06 1.7E-10 86.9 21.1 306 53-386 66-388 (394)
406 3rw6_A Nuclear RNA export fact 98.4 5E-08 1.7E-12 94.8 1.0 80 96-177 167-257 (267)
407 1io0_A Tropomodulin; LRR prote 98.3 4.1E-08 1.4E-12 90.8 -1.3 68 69-136 30-106 (185)
408 1zar_A RIO2 kinase; serine kin 98.3 7.5E-08 2.6E-12 95.6 -0.3 106 447-568 149-275 (282)
409 1io0_A Tropomodulin; LRR prote 98.2 2.2E-07 7.4E-12 85.9 -0.3 121 92-232 29-164 (185)
410 4h09_A Hypothetical leucine ri 98.1 0.00018 6.1E-09 74.5 21.1 121 52-180 47-167 (379)
411 4h09_A Hypothetical leucine ri 98.1 0.0008 2.7E-08 69.5 25.8 127 71-205 42-168 (379)
412 3e4g_A ATP synthase subunit S, 97.5 2.1E-05 7.3E-10 70.6 1.5 61 76-136 62-128 (176)
413 3e4g_A ATP synthase subunit S, 97.3 5.6E-05 1.9E-09 67.9 1.5 34 100-133 62-95 (176)
414 1zth_A RIO1 serine protein kin 96.8 0.00015 5.2E-09 70.5 -0.7 79 448-537 116-201 (258)
415 3rfe_A Platelet glycoprotein I 96.5 0.0034 1.2E-07 53.5 5.9 56 55-112 12-68 (130)
416 3rfe_A Platelet glycoprotein I 96.2 0.0089 3.1E-07 50.9 6.6 57 78-136 11-68 (130)
417 1pgv_A TMD-1, tropomodulin TMD 96.2 0.0011 3.8E-08 60.6 0.8 65 72-136 38-111 (197)
418 4gyi_A RIO2 kinase; protein ki 95.9 0.0021 7.1E-08 65.6 1.6 50 477-537 186-235 (397)
419 1pgv_A TMD-1, tropomodulin TMD 95.8 0.0014 4.8E-08 59.9 -0.2 84 50-133 40-136 (197)
420 2yle_A Protein spire homolog 1 94.0 0.14 4.7E-06 47.1 7.7 95 486-581 32-135 (229)
421 3tm0_A Aminoglycoside 3'-phosp 87.4 0.19 6.5E-06 48.3 1.7 68 448-521 55-123 (263)
422 1nd4_A Aminoglycoside 3'-phosp 75.4 1.4 4.9E-05 41.7 2.9 66 447-521 58-125 (264)
423 3dxp_A Putative acyl-COA dehyd 70.4 2.7 9.2E-05 42.2 3.6 71 448-521 82-157 (359)
424 3r70_A Aminoglycoside phosphot 36.7 27 0.00093 34.0 4.3 68 448-522 73-144 (320)
425 3tdw_A Gentamicin resistance p 30.7 35 0.0012 33.1 3.8 72 448-522 55-130 (306)
426 4gkh_A Aminoglycoside 3'-phosp 27.9 22 0.00076 33.5 1.8 70 448-522 65-135 (272)
427 3sg8_A APH(2'')-ID; antibiotic 27.3 42 0.0014 32.3 3.8 71 448-521 56-132 (304)
428 3ats_A Putative uncharacterize 25.0 37 0.0013 33.5 2.9 75 448-522 73-158 (357)
429 1kdl_A YOPD protein; yersinia, 22.8 29 0.00098 19.2 0.8 21 647-667 4-24 (26)
430 3d1u_A Putative fructosamine-3 20.5 49 0.0017 31.7 2.7 57 447-522 56-115 (288)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-51 Score=471.90 Aligned_cols=295 Identities=27% Similarity=0.432 Sum_probs=225.7
Q ss_pred CCCChhhHHHHHHHHhhcCCCcccccCCCCCCCCCCCccceeeCCCCCCEEEEEcCCCCCccc---cc------------
Q 040540 4 LNDLTTDQSSLLAFKAHAFDYRSALANNWSISYPICSWAGISCGSRHQRVTALNLSDMGLGGT---IP------------ 68 (669)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~w~~~~~~c~~~g~~c~~~~~~v~~L~ls~~~l~~~---~~------------ 68 (669)
-.+.++|++||++||+++.||. .+.+ |+.+.++|.|.||+|+ .++|+.|||+++++.|. +|
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~-W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l 82 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPD-WSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTT-CCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccC-CCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence 3456789999999999998877 6765 9877899999999998 47999999999999886 43
Q ss_pred -----------ccccCCCCCCEEeCCCCcCcccCCc--ccCCCCCCCEEEccCCcCCccCCccc-cCCcccccccccccC
Q 040540 69 -----------LHFGNLSFLVSLDISENNFHGHLPK--ELGQLRRLRVMSLAYNKLSGSFPSWI-GVLSKLRILRLDYNN 134 (669)
Q Consensus 69 -----------~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~ 134 (669)
..++.+++|++|||++|.+.|.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++|+|++|+
T Consensus 83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 4678889999999999999988888 88889999999999998887777655 667777777777777
Q ss_pred ccccCCcc-------------------------cCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCc
Q 040540 135 FTGPIPNS-------------------------LFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPT 189 (669)
Q Consensus 135 l~~~~p~~-------------------------~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~ 189 (669)
+++..|.. +..+++|++|++++|.+.+.+|. ++++++|++|++++|.+++.+|.
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH
Confidence 66554432 25677788888888888877776 88888888888888888888888
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCC
Q 040540 190 EIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATK 269 (669)
Q Consensus 190 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~ 269 (669)
.++.+++|++|++++|.+++.+|.. .+++|++|++++|.++|.+|..++..+++|++|++++|++.+..|..+..+++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred HHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 8888888888888888877766654 66677777777777776677666543466777777777776666666666777
Q ss_pred CCEEeCCCCCccccCccc-cCCCCCCCEEEccCCccc
Q 040540 270 LIGLDLGFNSFSGHIPNT-FGNLRHLSVLNVMMNNLT 305 (669)
Q Consensus 270 L~~L~ls~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~ 305 (669)
|+.|++++|.+.+.+|.. +..+++|++|++++|+++
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence 777777777666656544 666666666666666554
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-50 Score=453.76 Aligned_cols=421 Identities=21% Similarity=0.307 Sum_probs=366.7
Q ss_pred CChhhHHHHHHHHhhcCCCccccc-------CCCCCCCCCCCc---cceeeCCCCCCEEEEEcCCCCCcccccccccCCC
Q 040540 6 DLTTDQSSLLAFKAHAFDYRSALA-------NNWSISYPICSW---AGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLS 75 (669)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~l~-------~~w~~~~~~c~~---~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~ 75 (669)
....|+.||.+++.++.++..... .+|..+.++|.| .||+|+.. ++|+.|+|+++++.|.+|+++++|+
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 344699999999998866543322 269888899999 99999865 7999999999999999999999999
Q ss_pred CCCEEeCCCCc---------------------------------------------------------------------
Q 040540 76 FLVSLDISENN--------------------------------------------------------------------- 86 (669)
Q Consensus 76 ~L~~L~Ls~N~--------------------------------------------------------------------- 86 (669)
+|++|+|++|.
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 99999999984
Q ss_pred ---------CcccCCcccCCCCCCCEEEccCCcCCcc-----------------CCcccc--CCcccccccccccCcccc
Q 040540 87 ---------FHGHLPKELGQLRRLRVMSLAYNKLSGS-----------------FPSWIG--VLSKLRILRLDYNNFTGP 138 (669)
Q Consensus 87 ---------l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~ 138 (669)
++| +|..|+++++|++|+|++|.+++. +|+.++ ++++|++|+|++|++.+.
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 345 788899999999999999999986 999999 999999999999999999
Q ss_pred CCcccCCCCCCCeeeccccc-ccc-cCCcccCCC------CCCCEEEcccCCCcccCCc--cccCCCCCCEEEccCCCCC
Q 040540 139 IPNSLFNLSRLEMLRAEFNI-IGG-TIPSRIGNL------RKLVNLGLWSCNLQGQIPT--EIGSLQNLKNLDLADNKLS 208 (669)
Q Consensus 139 ~p~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~L------~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~ 208 (669)
+|..++++++|++|++++|. +++ .+|..++++ ++|++|++++|+++ .+|. .++.+++|++|++++|.++
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc
Confidence 99999999999999999998 998 899998887 99999999999999 8888 8999999999999999999
Q ss_pred CCCCccccCCCCCcEEEcccCCCccccchhhhccCCC-CCeeecccCcccccCCccccCCC--CCCEEeCCCCCccccCc
Q 040540 209 GLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRN-IEYLALSTNNLIGKIPNSITNAT--KLIGLDLGFNSFSGHIP 285 (669)
Q Consensus 209 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~-L~~L~ls~n~l~~~~p~~~~~l~--~L~~L~ls~n~l~~~~p 285 (669)
|.+| .+..+++|++|++++|.++ .+|..+. .+++ |++|++++|++. .+|..+..+. +|+.|++++|.+.+.+|
T Consensus 344 g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 344 GKLP-AFGSEIKLASLNLAYNQIT-EIPANFC-GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp EECC-CCEEEEEESEEECCSSEEE-ECCTTSE-EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred cchh-hhCCCCCCCEEECCCCccc-cccHhhh-hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 9999 9999999999999999998 8888876 5888 999999999998 7888877765 89999999999999999
Q ss_pred cccC-------CCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhh---hccccccc
Q 040540 286 NTFG-------NLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNF---SASLQNIY 355 (669)
Q Consensus 286 ~~~~-------~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~~l~~l~ 355 (669)
..|. .+++|+.|++++|+++..+. ..+..+++|+.|++++|.+....+..+... ...+++|+
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~--------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPK--------ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCT--------HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCC
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCH--------HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCcc
Confidence 8888 88899999999999986532 224457899999999999984333222111 01123899
Q ss_pred eEeecCcccCCCCCcccc--ccCCCcEEecCCCcccccCchhhcCCCCCCeeeC------cCCccceeCcccccCCCCCC
Q 040540 356 AFELGFNDLNGTIPTSIG--TLQQLQGFYVPENNLQGYVPHDLCHLERLNILNL------SGNKLSGHIPPCLASLTSLR 427 (669)
Q Consensus 356 ~l~l~~n~l~~~~~~~~~--~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l------s~n~l~~~~p~~l~~l~~L~ 427 (669)
.+++++|.+. .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++ ++|++.+.+|..++.+++|+
T Consensus 492 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~ 569 (636)
T 4eco_A 492 SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569 (636)
T ss_dssp EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred EEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCC
Confidence 9999999999 6777776 89999999999999998 8888999999999999 56788889999999999999
Q ss_pred EEECCCCcceecCCccc
Q 040540 428 ELHLGSNKLSSSIPSSL 444 (669)
Q Consensus 428 ~L~l~~N~l~~~~p~~~ 444 (669)
+|++++|++ +.+|..+
T Consensus 570 ~L~Ls~N~l-~~ip~~~ 585 (636)
T 4eco_A 570 QLQIGSNDI-RKVNEKI 585 (636)
T ss_dssp EEECCSSCC-CBCCSCC
T ss_pred EEECCCCcC-CccCHhH
Confidence 999999999 6788653
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.6e-49 Score=446.96 Aligned_cols=414 Identities=21% Similarity=0.311 Sum_probs=350.4
Q ss_pred CChhhHHHHHHHHhhcCCCcccccCCCCCCC-----CC--CCc------------cceeeCCCCCCEEEEEcCCCCCccc
Q 040540 6 DLTTDQSSLLAFKAHAFDYRSALANNWSISY-----PI--CSW------------AGISCGSRHQRVTALNLSDMGLGGT 66 (669)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~l~~~w~~~~-----~~--c~~------------~g~~c~~~~~~v~~L~ls~~~l~~~ 66 (669)
....|+.||++||.++.+| +|+.+. ++ |.| .||.|+. .++|+.|+|+++++.|.
T Consensus 266 ~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGR 338 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEE
T ss_pred cchHHHHHHHHHHHHcCCC------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCc
Confidence 3456999999999999665 386544 55 999 9999986 57999999999999999
Q ss_pred ccccccCCCCCCEEeC-CCCcCccc-------------------------------------------------------
Q 040540 67 IPLHFGNLSFLVSLDI-SENNFHGH------------------------------------------------------- 90 (669)
Q Consensus 67 ~~~~~~~l~~L~~L~L-s~N~l~~~------------------------------------------------------- 90 (669)
+|+++++|++|++||| ++|.+.|.
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 9999999999999999 77765444
Q ss_pred ---------------------CCcccCCCCCCCEEEccCCcCCc-----------------cCCcccc--CCcccccccc
Q 040540 91 ---------------------LPKELGQLRRLRVMSLAYNKLSG-----------------SFPSWIG--VLSKLRILRL 130 (669)
Q Consensus 91 ---------------------~p~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~L 130 (669)
+|..|+++++|++|+|++|++++ .+|+.++ ++++|++|+|
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L 498 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence 78889999999999999999998 3898887 9999999999
Q ss_pred cccCccccCCcccCCCCCCCeeeccccc-ccc-cCCcccCCCC-------CCCEEEcccCCCcccCCc--cccCCCCCCE
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNI-IGG-TIPSRIGNLR-------KLVNLGLWSCNLQGQIPT--EIGSLQNLKN 199 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~L~-------~L~~L~l~~n~l~~~~p~--~~~~l~~L~~ 199 (669)
++|++.+.+|..++++++|+.|++++|. +++ .+|..+++++ +|++|++++|.++ .+|. .++.+++|+.
T Consensus 499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~ 577 (876)
T 4ecn_A 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGL 577 (876)
T ss_dssp ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCE
T ss_pred cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCE
Confidence 9999999999999999999999999998 888 8888776655 9999999999998 8888 8999999999
Q ss_pred EEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCC-CCeeecccCcccccCCccccCCCC--CCEEeCC
Q 040540 200 LDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRN-IEYLALSTNNLIGKIPNSITNATK--LIGLDLG 276 (669)
Q Consensus 200 L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~-L~~L~ls~n~l~~~~p~~~~~l~~--L~~L~ls 276 (669)
|+|++|.++ .+| .+.++++|+.|++++|.++ .+|..+. .+++ |++|++++|++. .+|..+..+.. |+.|+++
T Consensus 578 L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 578 LDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp EECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECC
T ss_pred EECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEECc
Confidence 999999999 778 8899999999999999998 8888876 5788 999999999988 77888777654 9999999
Q ss_pred CCCccccCccc---cC--CCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhh-h---
Q 040540 277 FNSFSGHIPNT---FG--NLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGN-F--- 347 (669)
Q Consensus 277 ~n~l~~~~p~~---~~--~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~--- 347 (669)
+|.+.+.+|.. +. .+++|+.|++++|+++..+. ..+..+++|+.|++++|.+.. +|..... .
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~--------~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~ 723 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT--------ELFATGSPISTIILSNNLMTS-IPENSLKPKDGN 723 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH--------HHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSC
T ss_pred CCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH--------HHHccCCCCCEEECCCCcCCc-cChHHhcccccc
Confidence 99998876642 22 34589999999999875421 123467899999999999884 4433221 1
Q ss_pred hccccccceEeecCcccCCCCCcccc--ccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcC------CccceeCccc
Q 040540 348 SASLQNIYAFELGFNDLNGTIPTSIG--TLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSG------NKLSGHIPPC 419 (669)
Q Consensus 348 ~~~l~~l~~l~l~~n~l~~~~~~~~~--~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~------n~l~~~~p~~ 419 (669)
...+++|+.|++++|.+. .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++ |++.+.+|..
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 112348899999999998 6777776 89999999999999998 788888999999999976 7888899999
Q ss_pred ccCCCCCCEEECCCCcceecCCccc
Q 040540 420 LASLTSLRELHLGSNKLSSSIPSSL 444 (669)
Q Consensus 420 l~~l~~L~~L~l~~N~l~~~~p~~~ 444 (669)
+..+++|+.|++++|++ +.+|..+
T Consensus 802 l~~L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred HhcCCCCCEEECCCCCC-CccCHhh
Confidence 99999999999999999 7788753
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-47 Score=438.73 Aligned_cols=391 Identities=32% Similarity=0.522 Sum_probs=317.2
Q ss_pred CCEEEEEcCCCCCcccccccccCC-CCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCcc-ccCCcccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNL-SFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSW-IGVLSKLRIL 128 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L 128 (669)
..++.|++++|.+.+.+|..+..+ ++|++|++++|.+.+.+|..|+++++|++|++++|.+.|.+|.. ++++++|++|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 345666666666666666666554 67777777777777667777777777777777777776666654 6777777777
Q ss_pred cccccCccccCCcccCCCC-CCCeeecccccccccCCcccCC--CCCCCEEEcccCCCcccCCccccCCCCCCEEEccCC
Q 040540 129 RLDYNNFTGPIPNSLFNLS-RLEMLRAEFNIIGGTIPSRIGN--LRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADN 205 (669)
Q Consensus 129 ~L~~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~--L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N 205 (669)
+|++|++++.+|..+.+++ +|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..++.+++|++|++++|
T Consensus 349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence 7777777767777776665 6777777777777777776666 777888888888888888888888888889999888
Q ss_pred CCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCc
Q 040540 206 KLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIP 285 (669)
Q Consensus 206 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p 285 (669)
.+++.+|..+.++++|+.|++++|.+++.+|..+. .+++|++|++++|++.+.+|..+..+++|+.|++++|.+.+.+|
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence 88888888888888899999999988888888776 58889999999999888888888888999999999999888888
Q ss_pred cccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhh------------------
Q 040540 286 NTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNF------------------ 347 (669)
Q Consensus 286 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------ 347 (669)
.+++.+++|++|++++|++++.. ...+..+++|+.|++++|++.|.+|..+...
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~ 579 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNI--------PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEEC--------CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEE
T ss_pred hHHhcCCCCCEEECCCCcccCcC--------CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccc
Confidence 88888899999999988887542 2446778899999999999888777654321
Q ss_pred ------------------------------------------------hccccccceEeecCcccCCCCCccccccCCCc
Q 040540 348 ------------------------------------------------SASLQNIYAFELGFNDLNGTIPTSIGTLQQLQ 379 (669)
Q Consensus 348 ------------------------------------------------~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~ 379 (669)
...+..+..+++++|.++|.+|..++.++.|+
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 659 (768)
T 3rgz_A 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659 (768)
T ss_dssp CCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCC
T ss_pred cccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCC
Confidence 01235678999999999999999999999999
Q ss_pred EEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCCcccccccCc
Q 040540 380 GFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSLAFRSFD 450 (669)
Q Consensus 380 ~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~ 450 (669)
.|++++|.++|.+|..+..+++|+.||+++|+++|.+|..++.+++|++|++++|+++|.+|....+..|.
T Consensus 660 ~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~ 730 (768)
T 3rgz_A 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 730 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSC
T ss_pred EEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999876555543
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-40 Score=373.86 Aligned_cols=375 Identities=20% Similarity=0.189 Sum_probs=266.5
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
..++.|++++|.+++..|..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++.+..|..|+++++|++|+|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 57899999999999988999999999999999999999999999999999999999999999888999999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCC--EEEccCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLK--NLDLADNKLS 208 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~--~L~l~~N~l~ 208 (669)
++|++++..|..++++++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..++.+++|+ .|++++|.++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999987788899999999999999999885544555599999999999999988888899999998 8889998888
Q ss_pred CCCCccccCC---------------------------------------------------CCCcEEEcccCCCccccch
Q 040540 209 GLIPPTIFNI---------------------------------------------------STMRILTLESNQLSGRLPS 237 (669)
Q Consensus 209 ~~~p~~~~~l---------------------------------------------------~~L~~L~l~~n~l~~~~p~ 237 (669)
+..|..+... .+|+.|++++|.+++ ++.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~-~~~ 271 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISS 271 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS-CCT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc-cCH
Confidence 7665443221 045566666666654 333
Q ss_pred hhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccc
Q 040540 238 TIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFL 317 (669)
Q Consensus 238 ~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 317 (669)
..+..+++|++|++++|++. .+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+....
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~------- 343 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT------- 343 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS-------
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch-------
Confidence 32335677777777777765 5666677777777777777777766666677777777777777665432110
Q ss_pred cccCCCCCCCEEECcCCCCcccc--chhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchh
Q 040540 318 SSLTNCRNLSNLALASNPLGGIL--PQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHD 395 (669)
Q Consensus 318 ~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~ 395 (669)
..+..+++|+.|++++|.+.+.. +..+ ..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..|..
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQL----RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTT----TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred hhhhccCcCCEEECCCCccccccCcchhc----ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 12344555556666555555432 2221 12445555555555555555555555555555555555555444322
Q ss_pred -hcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCccee
Q 040540 396 -LCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSS 438 (669)
Q Consensus 396 -~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 438 (669)
+..+++|+.|++++|.+.+..|..++.+++|++|++++|++.+
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 4555555555555555555555555555555555555555543
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.8e-42 Score=351.71 Aligned_cols=293 Identities=28% Similarity=0.482 Sum_probs=269.1
Q ss_pred CCChhhHHHHHHHHhhcCCCcccccCCCCCCCCCCC--ccceeeCCCC--CCEEEEEcCCCCCcc--cccccccCCCCCC
Q 040540 5 NDLTTDQSSLLAFKAHAFDYRSALANNWSISYPICS--WAGISCGSRH--QRVTALNLSDMGLGG--TIPLHFGNLSFLV 78 (669)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~l~~~w~~~~~~c~--~~g~~c~~~~--~~v~~L~ls~~~l~~--~~~~~~~~l~~L~ 78 (669)
.+.+.|++||++||+++.++. .+.+ |..+.++|. |.||.|.... ++|+.|+++++++.+ .+|..+.++++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~-W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccC-CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 367789999999999997765 6655 987778998 9999998654 789999999999999 8999999999999
Q ss_pred EEeCCC-CcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 79 SLDISE-NNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 79 ~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
+|++++ |.+.+.+|..|+++++|++|+|++|++.+.+|..|.++++|++|+|++|.+++.+|..+.++++|++|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999995 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccCCCC-CCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccc
Q 040540 158 IIGGTIPSRIGNLR-KLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLP 236 (669)
Q Consensus 158 ~l~~~~p~~~~~L~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 236 (669)
.+++.+|..++++. +|++|++++|.+++.+|..+..++ |++|++++|.+++..|..+..+++|+.|++++|.+++.+|
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 238 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC
Confidence 99999999999998 999999999999999999999987 9999999999999999999999999999999999987666
Q ss_pred hhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCc
Q 040540 237 STIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNN 303 (669)
Q Consensus 237 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~ 303 (669)
. +. .+++|++|++++|++.+.+|..+..+++|+.|++++|.+.+.+|.. ..+++|+.+++.+|.
T Consensus 239 ~-~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 239 K-VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp G-CC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred c-cc-ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 5 43 6889999999999999899999999999999999999999888876 778888888888876
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.5e-42 Score=383.36 Aligned_cols=364 Identities=19% Similarity=0.289 Sum_probs=318.6
Q ss_pred CCcccccccccCCCCCCEEeCCCCcCccc-----------------CCcccC--CCCCCCEEEccCCcCCccCCccccCC
Q 040540 62 GLGGTIPLHFGNLSFLVSLDISENNFHGH-----------------LPKELG--QLRRLRVMSLAYNKLSGSFPSWIGVL 122 (669)
Q Consensus 62 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l 122 (669)
+++| +|..++++++|++|+|++|.+++. +|..++ ++++|++|+|++|.+.+.+|+.|+++
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 3445 788899999999999999999986 999999 99999999999999999999999999
Q ss_pred cccccccccccC-ccc-cCCcccCCC------CCCCeeecccccccccCCc--ccCCCCCCCEEEcccCCCcccCCcccc
Q 040540 123 SKLRILRLDYNN-FTG-PIPNSLFNL------SRLEMLRAEFNIIGGTIPS--RIGNLRKLVNLGLWSCNLQGQIPTEIG 192 (669)
Q Consensus 123 ~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~l~~n~l~~~~p~--~~~~L~~L~~L~l~~n~l~~~~p~~~~ 192 (669)
++|++|+|++|+ ++| .+|..++++ ++|++|++++|.++ .+|. .++++++|++|++++|.++|.+| .++
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 999999999998 998 899998887 99999999999999 8998 99999999999999999999999 899
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCC-CcEEEcccCCCccccchhhhc-cCCCCCeeecccCcccccCCcccc-----
Q 040540 193 SLQNLKNLDLADNKLSGLIPPTIFNIST-MRILTLESNQLSGRLPSTIGH-SLRNIEYLALSTNNLIGKIPNSIT----- 265 (669)
Q Consensus 193 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~-~l~~L~~L~ls~n~l~~~~p~~~~----- 265 (669)
.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+.. .+++|++|++++|++.+..|..+.
T Consensus 351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 9999999999999999 78999999999 999999999998 78876652 234899999999999999999888
Q ss_pred --CCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchh
Q 040540 266 --NATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQL 343 (669)
Q Consensus 266 --~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 343 (669)
.+.+|+.|++++|.+....+..+..+++|+.|++++|+++..+..... .....+.++++|+.|++++|.+. .+|..
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK-DENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE-ETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhc-cccccccccCCccEEECcCCcCC-ccChh
Confidence 888999999999999955445567799999999999999865432210 00011334559999999999999 45544
Q ss_pred HhhhhccccccceEeecCcccCCCCCccccccCCCcEEec------CCCcccccCchhhcCCCCCCeeeCcCCccceeCc
Q 040540 344 IGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYV------PENNLQGYVPHDLCHLERLNILNLSGNKLSGHIP 417 (669)
Q Consensus 344 ~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l------~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p 417 (669)
+.. ..+++|+.|++++|.+.+ +|..+..+++|+.|++ ++|.+.+.+|..+..+++|+.|++++|++ +.+|
T Consensus 507 ~~~--~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 507 FRA--TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp GST--TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred hhh--ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 320 247889999999999998 8999999999999999 56888999999999999999999999999 6788
Q ss_pred ccccCCCCCCEEECCCCccee
Q 040540 418 PCLASLTSLRELHLGSNKLSS 438 (669)
Q Consensus 418 ~~l~~l~~L~~L~l~~N~l~~ 438 (669)
..+. ++|+.|++++|++..
T Consensus 583 ~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 583 EKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp SCCC--TTCCEEECCSCTTCE
T ss_pred HhHh--CcCCEEECcCCCCcc
Confidence 8765 799999999999874
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.8e-40 Score=366.17 Aligned_cols=381 Identities=21% Similarity=0.199 Sum_probs=299.1
Q ss_pred CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccc
Q 040540 50 HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 50 ~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 129 (669)
..+++.|++++|.+.+..|..|.++++|++|+|++|.+.+..|..|+++++|++|++++|++.+..|..++++++|++|+
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence 35688899999988888888888899999999999988888888888888999999998888876677788888888888
Q ss_pred ccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCC--EEEcccCCCccc---------------------
Q 040540 130 LDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLV--NLGLWSCNLQGQ--------------------- 186 (669)
Q Consensus 130 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~--~L~l~~n~l~~~--------------------- 186 (669)
|++|++++..++.+..+++|++|++++|.+.+..|..++.+++|+ .|++++|.+.+.
T Consensus 136 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~ 215 (606)
T 3t6q_A 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215 (606)
T ss_dssp CCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCH
T ss_pred CCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhH
Confidence 888888875445555588888888888888777676677766666 566666555443
Q ss_pred ------------------------------------------------------CCccccCCCCCCEEEccCCCCCCCCC
Q 040540 187 ------------------------------------------------------IPTEIGSLQNLKNLDLADNKLSGLIP 212 (669)
Q Consensus 187 ------------------------------------------------------~p~~~~~l~~L~~L~l~~N~l~~~~p 212 (669)
.+..|+.+++|++|++++|.++ .+|
T Consensus 216 ~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp 294 (606)
T 3t6q_A 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP 294 (606)
T ss_dssp HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCC
T ss_pred HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCC
Confidence 3344677889999999999988 578
Q ss_pred ccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCc-cccCCCCCCEEeCCCCCccccC--ccccC
Q 040540 213 PTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPN-SITNATKLIGLDLGFNSFSGHI--PNTFG 289 (669)
Q Consensus 213 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~ls~n~l~~~~--p~~~~ 289 (669)
..+.++++|++|++++|.+.+..|..+. .+++|++|++++|.+.+.+|. .+..+++|+.|++++|.+.+.. +..+.
T Consensus 295 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 373 (606)
T 3t6q_A 295 SGLVGLSTLKKLVLSANKFENLCQISAS-NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373 (606)
T ss_dssp SSCCSCTTCCEEECTTCCCSBGGGGCGG-GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred hhhcccccCCEEECccCCcCcCchhhhh-ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence 8889999999999999999865565555 689999999999988866655 4888899999999999888765 67788
Q ss_pred CCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCC
Q 040540 290 NLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIP 369 (669)
Q Consensus 290 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~ 369 (669)
.+++|+.|++++|.+.+... ..+..+++|+.|++++|.+.+..+... ...+++|+.+++++|.+.+..|
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKT--------EAFKECPQLELLDLAFTRLKVKDAQSP---FQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp TCTTCCEEECCSCSCEEECT--------TTTTTCTTCSEEECTTCCEECCTTCCT---TTTCTTCCEEECTTCCCBTTCT
T ss_pred cCCCCCEEECCCCcCCcCCH--------HHhcCCccCCeEECCCCcCCCcccchh---hhCcccCCEEECCCCccCCcCH
Confidence 89999999999888776522 335667888888888888776544321 1246778888888888887777
Q ss_pred ccccccCCCcEEecCCCccccc---CchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCCcc
Q 040540 370 TSIGTLQQLQGFYVPENNLQGY---VPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSS 443 (669)
Q Consensus 370 ~~~~~l~~L~~l~l~~n~~~~~---~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 443 (669)
..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|++.+..|..++.+++|++|++++|++.+..|..
T Consensus 443 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 519 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519 (606)
T ss_dssp TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGG
T ss_pred HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhH
Confidence 8888888888888888887763 2355777888888888888888877888888888888888888887665543
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1e-39 Score=365.95 Aligned_cols=370 Identities=19% Similarity=0.184 Sum_probs=246.6
Q ss_pred CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccc
Q 040540 50 HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 50 ~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 129 (669)
..+++.|++++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|++|+|++|.+.+..|+.|+++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 35789999999999988888899999999999999999988898999999999999999999988899999999999999
Q ss_pred ccccCccccCCcccCCCCCCCeeecccccccc-cCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCC----EEEccC
Q 040540 130 LDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGG-TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLK----NLDLAD 204 (669)
Q Consensus 130 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~----~L~l~~ 204 (669)
|++|.+++..|..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..|..++.+++|+ +|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999998777889999999999999999876 6799999999999999999998877666554333222 333333
Q ss_pred CCCCCC--------------------------------------------------------------------------
Q 040540 205 NKLSGL-------------------------------------------------------------------------- 210 (669)
Q Consensus 205 N~l~~~-------------------------------------------------------------------------- 210 (669)
|.+++.
T Consensus 191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 332211
Q ss_pred -----------------------------CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCC
Q 040540 211 -----------------------------IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIP 261 (669)
Q Consensus 211 -----------------------------~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p 261 (669)
+| .+..+++|+.|++++|.+ +.+|. + .+++|++|++++|+..+..
T Consensus 271 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~~~- 344 (606)
T 3vq2_A 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMNKGSISF- 344 (606)
T ss_dssp CTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESCSSCEEC-
T ss_pred cccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C--CCCccceeeccCCcCccch-
Confidence 12 345556788888888888 57773 3 4667777777766544333
Q ss_pred ccccCCCCCCEEeCCCCCcccc--CccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccc
Q 040540 262 NSITNATKLIGLDLGFNSFSGH--IPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGI 339 (669)
Q Consensus 262 ~~~~~l~~L~~L~ls~n~l~~~--~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 339 (669)
.+..+++|+.|++++|.+.+. +|..+..+++|+.|++++|.+...+ ..+..+++|+.|++++|.+.+.
T Consensus 345 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---------~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 345 -KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS---------ANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp -CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC---------CCCTTCTTCCEEECTTSEEEST
T ss_pred -hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch---------hhccCCCCCCeeECCCCccCCc
Confidence 445666666666666666544 2555566666666666666655432 1233445555555555555444
Q ss_pred cc-hhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCcccc-cCchhhcCCCCCCeeeCcCCccceeCc
Q 040540 340 LP-QLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQG-YVPHDLCHLERLNILNLSGNKLSGHIP 417 (669)
Q Consensus 340 ~~-~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p 417 (669)
.+ ..+ ..+++|+.+++++|.+.+..|..+..+++|+.+++++|.+.+ .+|..+..+++|+.|++++|++.+..|
T Consensus 415 ~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 490 (606)
T 3vq2_A 415 TEFSAF----LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490 (606)
T ss_dssp TTTTTT----TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cChhhh----hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence 33 111 123445555555555554444445555555555555555544 234444455555555555555554444
Q ss_pred ccccCCCCCCEEECCCCcceec
Q 040540 418 PCLASLTSLRELHLGSNKLSSS 439 (669)
Q Consensus 418 ~~l~~l~~L~~L~l~~N~l~~~ 439 (669)
..++.+++|+.|++++|++.+.
T Consensus 491 ~~~~~l~~L~~L~Ls~N~l~~~ 512 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHNNLLFL 512 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCSCE
T ss_pred hhhcccccCCEEECCCCcCCCc
Confidence 4455555555555555555443
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-40 Score=369.27 Aligned_cols=380 Identities=22% Similarity=0.275 Sum_probs=255.3
Q ss_pred CCCccceeeCCC-----------CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEc
Q 040540 38 ICSWAGISCGSR-----------HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSL 106 (669)
Q Consensus 38 ~c~~~g~~c~~~-----------~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 106 (669)
.|.|.|+ |+.+ ...++.|++++|++++..|..|.++++|++|++++|.+.+..|..|+.+++|++|+|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4888887 6532 247999999999999988999999999999999999999988999999999999999
Q ss_pred cCCcCCccCCccccCCcccccccccccCccc-cCCcccCCCCCCCeeecccccccccCC-cccCCCCCCCEEEcccCCCc
Q 040540 107 AYNKLSGSFPSWIGVLSKLRILRLDYNNFTG-PIPNSLFNLSRLEMLRAEFNIIGGTIP-SRIGNLRKLVNLGLWSCNLQ 184 (669)
Q Consensus 107 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~L~~L~~L~l~~n~l~ 184 (669)
++|++.+..|..|+++++|++|+|++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 9999998878889999999999999999987 467889999999999999998555554 68999999999999999999
Q ss_pred ccCCccccCCC------------------------CCCEEEccCCCCCCCC--Ccc-ccCC-------------------
Q 040540 185 GQIPTEIGSLQ------------------------NLKNLDLADNKLSGLI--PPT-IFNI------------------- 218 (669)
Q Consensus 185 ~~~p~~~~~l~------------------------~L~~L~l~~N~l~~~~--p~~-~~~l------------------- 218 (669)
+..|..++.++ +|++|++++|.+++.. |.. ...+
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 98888877655 4555555555554421 000 0001
Q ss_pred --------------------------------------------------------------------CCCcEEEcccCC
Q 040540 219 --------------------------------------------------------------------STMRILTLESNQ 230 (669)
Q Consensus 219 --------------------------------------------------------------------~~L~~L~l~~n~ 230 (669)
.+|+.|++++|.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 122333333333
Q ss_pred CccccchhhhccCCCCCeeecccCcccccCC---ccccCCCCCCEEeCCCCCccccCc--cccCCCCCCCEEEccCCccc
Q 040540 231 LSGRLPSTIGHSLRNIEYLALSTNNLIGKIP---NSITNATKLIGLDLGFNSFSGHIP--NTFGNLRHLSVLNVMMNNLT 305 (669)
Q Consensus 231 l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p---~~~~~l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~ 305 (669)
+. .+|..++..+++|++|++++|++.+..| ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|+++
T Consensus 322 l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 32 2343333334555555555555544332 124445555555555555543221 23445555555555555554
Q ss_pred cCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCC
Q 040540 306 TESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPE 385 (669)
Q Consensus 306 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~ 385 (669)
..+ ..+..+++|+.|++++|.+....... .+.|+.+++++|.+++.. ..+++|+.|++++
T Consensus 401 ~lp---------~~~~~~~~L~~L~Ls~N~l~~l~~~~-------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 401 PMP---------DSCQWPEKMRFLNLSSTGIRVVKTCI-------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISR 460 (549)
T ss_dssp CCC---------SCCCCCTTCCEEECTTSCCSCCCTTS-------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCS
T ss_pred cCC---------hhhcccccccEEECCCCCcccccchh-------cCCceEEECCCCChhhhc----ccCChhcEEECCC
Confidence 332 12334455666666666554322110 135666666666666532 3566777777777
Q ss_pred CcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCC
Q 040540 386 NNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIP 441 (669)
Q Consensus 386 n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 441 (669)
|+++ .+|. ...+++|+.|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 7776 3444 3456777777777777777666667777777777777777765444
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5e-40 Score=381.02 Aligned_cols=397 Identities=22% Similarity=0.208 Sum_probs=248.7
Q ss_pred CCccceeeCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccC-CcccCCCCCCCEEEccCCcCCccCCc
Q 040540 39 CSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHL-PKELGQLRRLRVMSLAYNKLSGSFPS 117 (669)
Q Consensus 39 c~~~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~ 117 (669)
|.|..|.+ .+.+++.|||++|.+++..+.+|.++++|++|||++|.+.+.+ |..|+++++|++|+|++|.+.+..|+
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 44666655 3467888888888888888888888888888888888655555 67788888888888888888877788
Q ss_pred cccCCcccccccccccCccccCCcc--cCCCCCCCeeecccccccccCC-cccCCCCCCCEEEcccCCCcccCCccccCC
Q 040540 118 WIGVLSKLRILRLDYNNFTGPIPNS--LFNLSRLEMLRAEFNIIGGTIP-SRIGNLRKLVNLGLWSCNLQGQIPTEIGSL 194 (669)
Q Consensus 118 ~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p-~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l 194 (669)
.|+++++|++|+|++|.+++..|.. +.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++..|..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 8888888888888888888766554 7788888888888888876654 567888888888888877765544433222
Q ss_pred --------------------------------------------------------------------------------
Q 040540 195 -------------------------------------------------------------------------------- 194 (669)
Q Consensus 195 -------------------------------------------------------------------------------- 194 (669)
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence
Q ss_pred --------------CCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccC
Q 040540 195 --------------QNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKI 260 (669)
Q Consensus 195 --------------~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~ 260 (669)
++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|++.+..
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESCCCSCCC
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCCCCCccC
Confidence 2333344444444433444445555555555555555543343333 4566666666666665555
Q ss_pred CccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcc---------cccc--------------
Q 040540 261 PNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQ---------WSFL-------------- 317 (669)
Q Consensus 261 p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~---------~~~~-------------- 317 (669)
|..+..+++|+.|++++|.+.+..+..|.++++|+.|++++|.++..+..+.. ...+
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~ 410 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE 410 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCS
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeeccc
Confidence 66666666666666666666555555566666666666666665543211000 0000
Q ss_pred ---------cccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccC-----CCCCccccccCCCcEEec
Q 040540 318 ---------SSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLN-----GTIPTSIGTLQQLQGFYV 383 (669)
Q Consensus 318 ---------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~-----~~~~~~~~~l~~L~~l~l 383 (669)
..+..+++|+.|++++|.+.+..+... .....+|+.|++++|.+. +..+..+..+++|+.|++
T Consensus 411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT---PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487 (844)
T ss_dssp CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS---SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred CccccCchhhhhhcCCccceeeCCCCcccccccccc---cccCCccccccCCCCccccccccccchhhhcCcccccEEEC
Confidence 001134444444444444443222110 112344555555555554 223344666677777777
Q ss_pred CCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCCcc
Q 040540 384 PENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSS 443 (669)
Q Consensus 384 ~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 443 (669)
++|.+++..|..+..+++|+.|++++|++++..|..+. ++|+.|++++|++.+..|..
T Consensus 488 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp CHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred CCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence 77777777777777777777777777777765555444 67777777777777666654
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.9e-40 Score=373.31 Aligned_cols=359 Identities=18% Similarity=0.223 Sum_probs=307.7
Q ss_pred ccccccCCCCCCEEeCCCCcCcc-----------------cCCcccC--CCCCCCEEEccCCcCCccCCccccCCccccc
Q 040540 67 IPLHFGNLSFLVSLDISENNFHG-----------------HLPKELG--QLRRLRVMSLAYNKLSGSFPSWIGVLSKLRI 127 (669)
Q Consensus 67 ~~~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 127 (669)
+|..|+++++|++|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..|+++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78889999999999999999998 3899988 9999999999999999999999999999999
Q ss_pred ccccccC-ccc-cCCcccCCCC-------CCCeeecccccccccCCc--ccCCCCCCCEEEcccCCCcccCCccccCCCC
Q 040540 128 LRLDYNN-FTG-PIPNSLFNLS-------RLEMLRAEFNIIGGTIPS--RIGNLRKLVNLGLWSCNLQGQIPTEIGSLQN 196 (669)
Q Consensus 128 L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~l~~n~l~~~~p~--~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~ 196 (669)
|+|++|+ +++ .+|..+++++ +|+.|++++|.+. .+|. .++++++|++|++++|.++ .+| .|+.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999998 998 8887666555 9999999999999 8998 9999999999999999998 888 8999999
Q ss_pred CCEEEccCCCCCCCCCccccCCCC-CcEEEcccCCCccccchhhhccC--CCCCeeecccCcccccCCccc---c--CCC
Q 040540 197 LKNLDLADNKLSGLIPPTIFNIST-MRILTLESNQLSGRLPSTIGHSL--RNIEYLALSTNNLIGKIPNSI---T--NAT 268 (669)
Q Consensus 197 L~~L~l~~N~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~~l--~~L~~L~ls~n~l~~~~p~~~---~--~l~ 268 (669)
|+.|++++|.++ .+|..+.++++ |+.|++++|.++ .+|..+. .+ ++|+.|++++|++.+.+|... . .+.
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 999999999999 78999999999 999999999998 7887665 34 349999999999998776433 2 345
Q ss_pred CCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhh
Q 040540 269 KLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFS 348 (669)
Q Consensus 269 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 348 (669)
+|+.|++++|.+....+..+..+++|+.|++++|+++..+...... ..+.+.++++|+.|++++|.+. .+|..+. .
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~-~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~--~ 749 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP-KDGNYKNTYLLTTIDLRFNKLT-SLSDDFR--A 749 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC-TTSCCTTGGGCCEEECCSSCCC-CCCGGGS--T
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcc-ccccccccCCccEEECCCCCCc-cchHHhh--h
Confidence 8999999999999443344568999999999999998654322100 0011335569999999999998 4554432 0
Q ss_pred ccccccceEeecCcccCCCCCccccccCCCcEEecCC------CcccccCchhhcCCCCCCeeeCcCCccceeCcccccC
Q 040540 349 ASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPE------NNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLAS 422 (669)
Q Consensus 349 ~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~------n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~ 422 (669)
..+++|+.|++++|.+.+ +|..+..+++|+.|++++ |.+.+.+|..+..+++|+.|++++|++ +.+|..+.
T Consensus 750 ~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~- 826 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT- 826 (876)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-
T ss_pred ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-
Confidence 247889999999999998 788999999999999976 888999999999999999999999999 68888765
Q ss_pred CCCCCEEECCCCcceec
Q 040540 423 LTSLRELHLGSNKLSSS 439 (669)
Q Consensus 423 l~~L~~L~l~~N~l~~~ 439 (669)
++|+.|++++|++...
T Consensus 827 -~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 827 -PQLYILDIADNPNISI 842 (876)
T ss_dssp -SSSCEEECCSCTTCEE
T ss_pred -CCCCEEECCCCCCCcc
Confidence 6999999999998753
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-39 Score=360.01 Aligned_cols=382 Identities=21% Similarity=0.209 Sum_probs=237.0
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
..++.|++++|.+++..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++.+..|..|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46888999999998888888888999999999999888877888888999999999999888777788889999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccc-cCCcccCCCCCCCEEEcccCCCcccCCccccCCCCC----CEEEccCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGG-TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNL----KNLDLADN 205 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L----~~L~l~~N 205 (669)
++|++++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..|..++.+++| +.|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9998887666678888999999999888876 468888888899999988888887766666666666 56666666
Q ss_pred CCCCCCC-------------------------------------------------------------------------
Q 040540 206 KLSGLIP------------------------------------------------------------------------- 212 (669)
Q Consensus 206 ~l~~~~p------------------------------------------------------------------------- 212 (669)
.+++..|
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 5544332
Q ss_pred --------ccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCccc---------------------ccCCcc
Q 040540 213 --------PTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLI---------------------GKIPNS 263 (669)
Q Consensus 213 --------~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~---------------------~~~p~~ 263 (669)
..+..+++|+.|++++|.+. .+|..+. .+ +|++|++++|.+. +..+.
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~-~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~- 343 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSY-NF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE- 343 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCS-CC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC-
T ss_pred hhhhhhchhhhcCcCcccEEEecCccch-hhhhhhc-cC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc-
Confidence 22233445555555555544 3443332 12 3333333333322 22211
Q ss_pred ccCCCCCCEEeCCCCCccccC--ccccCCCCCCCEEEccCCccccCCCCCc-------------cc---ccccccCCCCC
Q 040540 264 ITNATKLIGLDLGFNSFSGHI--PNTFGNLRHLSVLNVMMNNLTTESSSAD-------------QW---SFLSSLTNCRN 325 (669)
Q Consensus 264 ~~~l~~L~~L~ls~n~l~~~~--p~~~~~l~~L~~L~l~~N~l~~~~~~~~-------------~~---~~~~~l~~l~~ 325 (669)
..+++|+.|++++|.+.+.. |..+..+++|+.|++++|.+.+.+.... .. .....+..+++
T Consensus 344 -~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 -VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp -CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred -ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 34556666666666665432 4455556666666666665544311000 00 00012334455
Q ss_pred CCEEECcCCCCccccchhHhhhhccccccceEeecCcccC-CCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCe
Q 040540 326 LSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLN-GTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNI 404 (669)
Q Consensus 326 L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~-~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~ 404 (669)
|+.|++++|.+.+..|..+. .+++|+.+++++|.+. +.+|..+..+++|+.|++++|.+.+..|..+..+++|+.
T Consensus 423 L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp CCEEECTTSCCEECCTTTTT----TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCEEeCcCCcccccchhhhh----cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 55555555555544443322 2445555555555554 344555555555555555555555555555555555555
Q ss_pred eeCcCCccceeCcccccCCCCCCEEECCCCcceecCC
Q 040540 405 LNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIP 441 (669)
Q Consensus 405 L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 441 (669)
|++++|++.+..|..+..+++|+.|++++|++.+..|
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 5555555555544455555555555555555554444
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-38 Score=361.17 Aligned_cols=380 Identities=24% Similarity=0.229 Sum_probs=275.1
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|++.+..+..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+.+..+..|+++++|++|+|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57999999999999888888999999999999999999999999999999999999999999666668999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCcccc--CCCCCCEEEccCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIG--SLQNLKNLDLADNKLS 208 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~l~~N~l~ 208 (669)
++|++++..|..|+++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..+. .+++|++|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999988888999999999999999999999999999999999999999999988777654 5589999999999999
Q ss_pred CCCCccccCC---------------------------CCCcEEEcccCCCccccchhhhccCC--CCCeeecccCccccc
Q 040540 209 GLIPPTIFNI---------------------------STMRILTLESNQLSGRLPSTIGHSLR--NIEYLALSTNNLIGK 259 (669)
Q Consensus 209 ~~~p~~~~~l---------------------------~~L~~L~l~~n~l~~~~p~~~~~~l~--~L~~L~ls~n~l~~~ 259 (669)
+..|..+..+ ++|+.|++++|.+++..|..+. .++ +|++|++++|++.+.
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEE
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCcc
Confidence 8888776654 4567777777777766665554 343 488888888888888
Q ss_pred CCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccc--cccCCCCCCCEEECcCCCCc
Q 040540 260 IPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFL--SSLTNCRNLSNLALASNPLG 337 (669)
Q Consensus 260 ~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--~~l~~l~~L~~L~l~~n~l~ 337 (669)
.|..+..+++|+.|++++|.+.+..|..|.++++|+.|+++.|...+..... ....+ ..+..+++|+.|++++|.+.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA-SLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc-cccccChhhcccCCCCCEEECCCCccC
Confidence 8888888888888888888888888888888888888888765433210000 00000 13455677777777777776
Q ss_pred cccchhHhhhhccccccceEee----------------------------cCcccCCCCCccccccCCCcEEecCCCccc
Q 040540 338 GILPQLIGNFSASLQNIYAFEL----------------------------GFNDLNGTIPTSIGTLQQLQGFYVPENNLQ 389 (669)
Q Consensus 338 ~~~~~~~~~~~~~l~~l~~l~l----------------------------~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~ 389 (669)
+..+..+.. +.+|+.+++ ++|.+.+..|..+..+++|+.+++++|.+.
T Consensus 343 ~~~~~~~~~----l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 343 GIKSNMFTG----LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp CCCTTTTTT----CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CCChhHhcc----ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 655443322 334444444 444444444444444444555555554444
Q ss_pred ccCc-hhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcc
Q 040540 390 GYVP-HDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKL 436 (669)
Q Consensus 390 ~~~p-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l 436 (669)
+.+| ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccc
Confidence 4333 3344444444444444444443333444444444444444433
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.3e-38 Score=352.86 Aligned_cols=374 Identities=21% Similarity=0.207 Sum_probs=308.0
Q ss_pred CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccc
Q 040540 50 HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 50 ~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 129 (669)
..+++.|++++|.+.+..|..|.++++|++|+|++|.+.+..|..|+++++|++|++++|.+.+..|..++++++|++|+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 35789999999999988888899999999999999999988899999999999999999999877778899999999999
Q ss_pred ccccCccc-cCCcccCCCCCCCeeecccccccccCCcccCCCCC---------------------------CCEEEcccC
Q 040540 130 LDYNNFTG-PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRK---------------------------LVNLGLWSC 181 (669)
Q Consensus 130 L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~---------------------------L~~L~l~~n 181 (669)
|++|.+++ .+|..++++++|++|++++|.+.+..|..++.+++ |+.|++++|
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence 99999886 56888999999999999999888766655443332 233333333
Q ss_pred CCc-----------------------------------------------------------------------------
Q 040540 182 NLQ----------------------------------------------------------------------------- 184 (669)
Q Consensus 182 ~l~----------------------------------------------------------------------------- 184 (669)
.+.
T Consensus 215 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 294 (606)
T 3vq2_A 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294 (606)
T ss_dssp CSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEES
T ss_pred ccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecC
Confidence 221
Q ss_pred ---ccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCccccc--
Q 040540 185 ---GQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGK-- 259 (669)
Q Consensus 185 ---~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~-- 259 (669)
..+| .+..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|...+.+ .+. .+++|++|++++|++.+.
T Consensus 295 ~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~-~l~~L~~L~ls~n~l~~~~~ 367 (606)
T 3vq2_A 295 VSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKV-ALPSLSYLDLSRNALSFSGC 367 (606)
T ss_dssp CCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCC-CCTTCCEEECCSSCEEEEEE
T ss_pred ccchhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhc-cCCCCCEEECcCCccCCCcc
Confidence 1222 456677899999999999 6777 45 9999999999999665544 333 689999999999998876
Q ss_pred CCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccc
Q 040540 260 IPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGI 339 (669)
Q Consensus 260 ~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 339 (669)
.|..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++.+.... ..+..+++|+.|++++|.+.+.
T Consensus 368 ~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~~l~~L~~L~l~~n~l~~~ 439 (606)
T 3vq2_A 368 CSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEF-------SAFLSLEKLLYLDISYTNTKID 439 (606)
T ss_dssp CCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTT-------TTTTTCTTCCEEECTTSCCEEC
T ss_pred hhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccCh-------hhhhccccCCEEECcCCCCCcc
Confidence 37888999999999999999885 567889999999999999998775321 2466788999999999999887
Q ss_pred cchhHhhhhccccccceEeecCcccCC-CCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcc
Q 040540 340 LPQLIGNFSASLQNIYAFELGFNDLNG-TIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP 418 (669)
Q Consensus 340 ~~~~~~~~~~~l~~l~~l~l~~n~l~~-~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~ 418 (669)
.|..+. .+++|+.+++++|.+.+ ..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..|.
T Consensus 440 ~~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 515 (606)
T 3vq2_A 440 FDGIFL----GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515 (606)
T ss_dssp CTTTTT----TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred chhhhc----CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence 776553 36789999999999987 4788899999999999999999998888899999999999999999988899
Q ss_pred cccCCCCCCEEECCCCcceecCCcc
Q 040540 419 CLASLTSLRELHLGSNKLSSSIPSS 443 (669)
Q Consensus 419 ~l~~l~~L~~L~l~~N~l~~~~p~~ 443 (669)
.++.+++|+.|++++|++. .+|..
T Consensus 516 ~~~~l~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 516 HYNQLYSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp GTTTCTTCCEEECTTSCCC-CEESC
T ss_pred HccCCCcCCEEECCCCcCc-ccCHh
Confidence 9999999999999999987 45543
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.9e-38 Score=342.85 Aligned_cols=366 Identities=20% Similarity=0.216 Sum_probs=243.5
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccC-CcccCCCCCCCEEEccCCcCCccCCccccCCccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHL-PKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 129 (669)
.+++.|++++|.+.+..|..|+++++|++|++++|.+.+.+ |..|..+++|++|+|++|++.+..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45777777777777766777777777777777777776444 45577777777777777777766677777777777777
Q ss_pred ccccCccccCCcc--cCCCCCCCeeecccccccccCCcc-cCCCCCCCEEEcccCCCcccCCccccCC--CCCCEEEccC
Q 040540 130 LDYNNFTGPIPNS--LFNLSRLEMLRAEFNIIGGTIPSR-IGNLRKLVNLGLWSCNLQGQIPTEIGSL--QNLKNLDLAD 204 (669)
Q Consensus 130 L~~n~l~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p~~-~~~L~~L~~L~l~~n~l~~~~p~~~~~l--~~L~~L~l~~ 204 (669)
|++|++++..|.. +.++++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..|..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 7777777644443 777777777777777777666655 6777777777777777777766666655 5677777777
Q ss_pred CCCCCCCCcc--------ccCCCCCcEEEcccCCCccccchhhhcc--CCCCCeeecccCcccccCCccccCCCCCCEEe
Q 040540 205 NKLSGLIPPT--------IFNISTMRILTLESNQLSGRLPSTIGHS--LRNIEYLALSTNNLIGKIPNSITNATKLIGLD 274 (669)
Q Consensus 205 N~l~~~~p~~--------~~~l~~L~~L~l~~n~l~~~~p~~~~~~--l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 274 (669)
|.+.+..+.. +..+++|++|++++|.+++.+|..+... ..+|+.|++++|.+.+....
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------ 257 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------------ 257 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT------------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc------------
Confidence 7776544332 2345667777777777766666655432 25667777776654432110
Q ss_pred CCCCCccccCccccCC--CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhcccc
Q 040540 275 LGFNSFSGHIPNTFGN--LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQ 352 (669)
Q Consensus 275 ls~n~l~~~~p~~~~~--l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~ 352 (669)
.+.+....+..+.. .++|+.|++++|++.+... ..+..+++|+.|++++|.+.+..+..+. .++
T Consensus 258 --~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~ 323 (455)
T 3v47_A 258 --HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK--------SVFSHFTDLEQLTLAQNEINKIDDNAFW----GLT 323 (455)
T ss_dssp --CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT--------TTTTTCTTCCEEECTTSCCCEECTTTTT----TCT
T ss_pred --hhhhccCcccccccccccCceEEEecCccccccch--------hhcccCCCCCEEECCCCcccccChhHhc----Ccc
Confidence 00111111111111 1345555555555443311 1234445555555555555554443332 245
Q ss_pred ccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECC
Q 040540 353 NIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLG 432 (669)
Q Consensus 353 ~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 432 (669)
+|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..+..+..+++|+.|+++
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence 56666666666666666777788899999999999998889999999999999999999998777778899999999999
Q ss_pred CCcceecCCc
Q 040540 433 SNKLSSSIPS 442 (669)
Q Consensus 433 ~N~l~~~~p~ 442 (669)
+|++.+..|.
T Consensus 404 ~N~l~~~~~~ 413 (455)
T 3v47_A 404 TNPWDCSCPR 413 (455)
T ss_dssp SSCBCCCTTT
T ss_pred CCCcccCCCc
Confidence 9999987774
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.9e-38 Score=345.60 Aligned_cols=364 Identities=22% Similarity=0.274 Sum_probs=225.2
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|.+.+..|..|.++++|++|+|++|.+++..|..|+++++|++|+|++|++. .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 57888999999888877778888899999999999888888888888999999999999888 46655 7888999999
Q ss_pred cccCccc-cCCcccCCCCCCCeeecccccccccCCcccCCCCCC--CEEEcccCCC--cccCCccccCCC----------
Q 040540 131 DYNNFTG-PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL--VNLGLWSCNL--QGQIPTEIGSLQ---------- 195 (669)
Q Consensus 131 ~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L--~~L~l~~n~l--~~~~p~~~~~l~---------- 195 (669)
++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9998887 467888889999999999888876 456667777 8899988888 666666665533
Q ss_pred ----------------C---------------------------------------------------------CCEEEc
Q 040540 196 ----------------N---------------------------------------------------------LKNLDL 202 (669)
Q Consensus 196 ----------------~---------------------------------------------------------L~~L~l 202 (669)
+ |++|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 2 333333
Q ss_pred cCCCCCCCCCccc-----cCCCCCcEEEcccCCCccccc-hhhhccC---CCCCeeecccCcccccCCccccCCCCCCEE
Q 040540 203 ADNKLSGLIPPTI-----FNISTMRILTLESNQLSGRLP-STIGHSL---RNIEYLALSTNNLIGKIPNSITNATKLIGL 273 (669)
Q Consensus 203 ~~N~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~~~p-~~~~~~l---~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 273 (669)
++|.++|.+|..+ .++++|+.+++++|.+ .+| ..+. .+ .+|+.|++++|.+.... .+..+++|+.|
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~-~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 329 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIY-EIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL 329 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHH-HHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred ecccccCccccchhhcccccCceeEeccccccce--ecchhhhh-cccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence 3333333333333 3333333333333333 222 1111 01 23444444444432211 01455566666
Q ss_pred eCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccc
Q 040540 274 DLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQN 353 (669)
Q Consensus 274 ~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~ 353 (669)
++++|.+.+.+|..+..+++|+.|++++|++++.+. ....+..+++|+.|++++|.+.+.+|.. ....+++
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~------~~~~~~~l~~L~~L~Ls~N~l~~~l~~~---~~~~l~~ 400 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK------IAEMTTQMKSLQQLDISQNSVSYDEKKG---DCSWTKS 400 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH------HHHHHTTCTTCCEEECCSSCCBCCGGGC---SCCCCTT
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCcccc------chHHHhhCCCCCEEECCCCcCCcccccc---hhccCcc
Confidence 666666666566666666666666666666554210 0122445566666666666666533321 1123455
Q ss_pred cceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcc-cccCCCCCCEEECC
Q 040540 354 IYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPP-CLASLTSLRELHLG 432 (669)
Q Consensus 354 l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~l~ 432 (669)
|+.+++++|.+++..|..+. ++|+.|++++|.+. .+|..+..+++|+.|++++|++.. +|. .+..+++|+.|+++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECc
Confidence 66666666666555544443 45666666666665 455555566666666666666663 333 35666666666666
Q ss_pred CCccee
Q 040540 433 SNKLSS 438 (669)
Q Consensus 433 ~N~l~~ 438 (669)
+|++.+
T Consensus 477 ~N~~~c 482 (520)
T 2z7x_B 477 TNPWDC 482 (520)
T ss_dssp SSCBCC
T ss_pred CCCCcc
Confidence 666654
No 18
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.1e-37 Score=349.63 Aligned_cols=379 Identities=24% Similarity=0.248 Sum_probs=238.5
Q ss_pred CEEEEEcCCCCCcccccccccCCCC--CCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSF--LVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 129 (669)
.++.|++++|.+.+..|..|..++. |++|++++|.+.+..|..|+.+++|++|++++|++.+..|..|.++++|++|+
T Consensus 223 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (680)
T 1ziw_A 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEE
T ss_pred cccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEe
Confidence 4566666666666666666666544 77777777777666666666777777777777777666666677777777777
Q ss_pred ccccCccc-----cCCc----ccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCccc--CCccccCC--CC
Q 040540 130 LDYNNFTG-----PIPN----SLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQ--IPTEIGSL--QN 196 (669)
Q Consensus 130 L~~n~l~~-----~~p~----~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~--~p~~~~~l--~~ 196 (669)
+++|...+ .+|. .+..+++|++|++++|.+.+..|..|.++++|++|++++|.+... .+..|..+ ++
T Consensus 303 L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~ 382 (680)
T 1ziw_A 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382 (680)
T ss_dssp CTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSC
T ss_pred ccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCc
Confidence 76654432 2222 566667777777777777666666667777777777776654321 12222222 46
Q ss_pred CCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCC
Q 040540 197 LKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLG 276 (669)
Q Consensus 197 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls 276 (669)
|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|...+..+++|++|++++|++.+..+..+..+++|+.|+++
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 67777777777766666667777777777777777666654444456677777777777666666666677777777777
Q ss_pred CCCcc--ccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHh----hhhcc
Q 040540 277 FNSFS--GHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIG----NFSAS 350 (669)
Q Consensus 277 ~n~l~--~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~----~~~~~ 350 (669)
+|.+. +..|..|.++++|+.|++++|++++.+. ..+..+++|+.|++++|.+.+..+..+. .....
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~ 534 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND--------DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCcCCh--------hhhccccccCEEeCCCCCccccchhhccCCcchhhcC
Confidence 77665 4556666777777777777776665432 2245566677777777766654221110 01233
Q ss_pred ccccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCccccc-CCCCCCEE
Q 040540 351 LQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLA-SLTSLREL 429 (669)
Q Consensus 351 l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~-~l~~L~~L 429 (669)
+.+|+.+++++|.+....+..|..+++|+.+++++|.+++..+..|..+.+|+.|++++|++++..|..+. .+++|+.+
T Consensus 535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l 614 (680)
T 1ziw_A 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE
T ss_pred CCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEE
Confidence 55666667777766644444566666677777776766665555566666677777777766665555555 56666777
Q ss_pred ECCCCccee
Q 040540 430 HLGSNKLSS 438 (669)
Q Consensus 430 ~l~~N~l~~ 438 (669)
++++|++..
T Consensus 615 ~l~~N~~~c 623 (680)
T 1ziw_A 615 DMRFNPFDC 623 (680)
T ss_dssp ECTTCCCCB
T ss_pred EccCCCccc
Confidence 777666653
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.6e-37 Score=338.19 Aligned_cols=362 Identities=21% Similarity=0.259 Sum_probs=220.3
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
+.+|++++++++ +|..+. ++|++|++++|.+.+..|..|.++++|++|+|++|++++..|+.|+++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 567777777764 554443 66777777777777666666777777777777777777666667777777777777777
Q ss_pred CccccCCcccCCCCCCCeeecccccccc-cCCcccCCCCCCCEEEcccCCCcccCCccccCCCCC--CEEEccCCCC--C
Q 040540 134 NFTGPIPNSLFNLSRLEMLRAEFNIIGG-TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNL--KNLDLADNKL--S 208 (669)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L--~~L~l~~N~l--~ 208 (669)
+++ .+|.. .+++|++|++++|.+.+ .+|..|+++++|++|++++|.+.+. .+..+++| ++|++++|.+ +
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 776 44544 67777777777777665 3456677777777777777776642 23344444 7777777766 5
Q ss_pred CCCCccccCCC---------------------------------------------------------------------
Q 040540 209 GLIPPTIFNIS--------------------------------------------------------------------- 219 (669)
Q Consensus 209 ~~~p~~~~~l~--------------------------------------------------------------------- 219 (669)
+..|..+..+.
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 55555544432
Q ss_pred ------------CCcEEEcccCCCccccchhhh----ccC--------------------------CCCCeeecccCccc
Q 040540 220 ------------TMRILTLESNQLSGRLPSTIG----HSL--------------------------RNIEYLALSTNNLI 257 (669)
Q Consensus 220 ------------~L~~L~l~~n~l~~~~p~~~~----~~l--------------------------~~L~~L~ls~n~l~ 257 (669)
+|++|++++|.++|.+|..++ ..+ .+|++|++++|.+.
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 333333333333333333221 001 12333333333332
Q ss_pred ccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCc
Q 040540 258 GKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLG 337 (669)
Q Consensus 258 ~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 337 (669)
... ....+++|+.|++++|.+.+.+|..+.++++|+.|++++|++++.+. ....+..+++|+.|++++|.+.
T Consensus 345 ~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 345 HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK------VALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH------HHHTTTTCTTCCEEECTTSCCB
T ss_pred ccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc------chhhhcCCCCCCEEECCCCcCC
Confidence 110 01456677777777777777677777777777777777777665321 1123456677777777777776
Q ss_pred cccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCc
Q 040540 338 GILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIP 417 (669)
Q Consensus 338 ~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p 417 (669)
+.+|... ...+.+|+.+++++|.+++..|..+. ++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +|
T Consensus 417 ~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~ 489 (562)
T 3a79_B 417 SHAYDRT---CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VP 489 (562)
T ss_dssp SCCSSCC---CCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CC
T ss_pred CccChhh---hcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CC
Confidence 6443321 12356677777777777665555443 56777777777776 455555577777777777777774 44
Q ss_pred cc-ccCCCCCCEEECCCCcceec
Q 040540 418 PC-LASLTSLRELHLGSNKLSSS 439 (669)
Q Consensus 418 ~~-l~~l~~L~~L~l~~N~l~~~ 439 (669)
.. +..+++|+.|++++|++.+.
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp TTSTTTCTTCCCEECCSCCBCCC
T ss_pred HHHHhcCCCCCEEEecCCCcCCC
Confidence 43 67777777777777777643
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.7e-37 Score=353.85 Aligned_cols=372 Identities=22% Similarity=0.235 Sum_probs=286.4
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccC-CccccCCcccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF-PSWIGVLSKLRILRLDY 132 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~ 132 (669)
...|.++++++. +|. -.++|++|||++|.+++..|..|.++++|++|+|++|.+.+.+ |..|+++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 557788888874 444 4578999999999999999999999999999999999766666 78999999999999999
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCCcc--cCCCCCCCEEEcccCCCcccCC-ccccCCCCCCEEEccCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSR--IGNLRKLVNLGLWSCNLQGQIP-TEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~L~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~ 209 (669)
|.+++..|..|+++++|++|++++|.+.+.+|.. ++++++|++|++++|.+++..+ ..|+++++|++|++++|.+++
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9999999999999999999999999999877765 9999999999999999988765 579999999999999999998
Q ss_pred CCCccccCC--CC------------------------------CcEEEcccCCCccccchhhhcc---------------
Q 040540 210 LIPPTIFNI--ST------------------------------MRILTLESNQLSGRLPSTIGHS--------------- 242 (669)
Q Consensus 210 ~~p~~~~~l--~~------------------------------L~~L~l~~n~l~~~~p~~~~~~--------------- 242 (669)
..|..+..+ ++ |+.|++++|.+++.++..+...
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 877776654 44 4555555554444333322211
Q ss_pred ----------------------CCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEcc
Q 040540 243 ----------------------LRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVM 300 (669)
Q Consensus 243 ----------------------l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~ 300 (669)
.++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..|.++++|+.|+++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 1457777777777777777777888888888888888887777778888888888888
Q ss_pred CCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCC------------
Q 040540 301 MNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTI------------ 368 (669)
Q Consensus 301 ~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~------------ 368 (669)
+|.+++... ..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+..
T Consensus 323 ~N~l~~~~~--------~~~~~l~~L~~L~L~~N~i~~~~~~~~~----~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 323 YNLLGELYS--------SNFYGLPKVAYIDLQKNHIAIIQDQTFK----FLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390 (844)
T ss_dssp SCCCSCCCS--------CSCSSCTTCCEEECCSCCCCCCCSSCSC----SCCCCCEEEEETCCSCCCSSCCSCSEEEEES
T ss_pred CCCCCccCH--------HHhcCCCCCCEEECCCCCCCccChhhhc----CCCCCCEEECCCCCCCcccCCCCcchhccCC
Confidence 887765422 3466788999999999988776654432 3566777777766654321
Q ss_pred ------Cc----------------------cccccCCCcEEecCCCccccc-----------------------------
Q 040540 369 ------PT----------------------SIGTLQQLQGFYVPENNLQGY----------------------------- 391 (669)
Q Consensus 369 ------~~----------------------~~~~l~~L~~l~l~~n~~~~~----------------------------- 391 (669)
|. .+..+++|+.|++++|.+.+.
T Consensus 391 N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~ 470 (844)
T 3j0a_A 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470 (844)
T ss_dssp CCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSC
T ss_pred CCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccc
Confidence 00 022455666666666665532
Q ss_pred -CchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCC
Q 040540 392 -VPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIP 441 (669)
Q Consensus 392 -~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 441 (669)
.+..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..|
T Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 521 (844)
T 3j0a_A 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521 (844)
T ss_dssp CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCC
T ss_pred cchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccCh
Confidence 22335567788888888888888888888889999999999999886444
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-36 Score=337.35 Aligned_cols=366 Identities=20% Similarity=0.239 Sum_probs=282.4
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCc
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNF 135 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 135 (669)
.|.++++++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|++.+..|+.|+++++|++|+|++|++
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 799999997 5665554 7999999999999998899999999999999999999988889999999999999999999
Q ss_pred cccCCcccCCCCCCCeeecccccccc-cCCcccCCCCCCCEEEcccCCCcccCC-ccccCCCCCCEEEccCCCCCCCCCc
Q 040540 136 TGPIPNSLFNLSRLEMLRAEFNIIGG-TIPSRIGNLRKLVNLGLWSCNLQGQIP-TEIGSLQNLKNLDLADNKLSGLIPP 213 (669)
Q Consensus 136 ~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~L~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~ 213 (669)
++..|..++++++|++|++++|.+.+ ..|..++++++|++|++++|.+.+.+| ..|+.+++|++|++++|.+++..|.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 98888889999999999999999987 467889999999999999999555554 6899999999999999999999999
Q ss_pred cccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccC--Ccc-cc-------------------------
Q 040540 214 TIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKI--PNS-IT------------------------- 265 (669)
Q Consensus 214 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~--p~~-~~------------------------- 265 (669)
.+..+++|++|+++.|.+. .+|..+...+++|++|++++|++.+.. |.. ..
T Consensus 167 ~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp TTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred hhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence 9998888888888888774 566666556778888888888776531 100 00
Q ss_pred --------------------------------------------------------------CCCCCCEEeCCCCCcccc
Q 040540 266 --------------------------------------------------------------NATKLIGLDLGFNSFSGH 283 (669)
Q Consensus 266 --------------------------------------------------------------~l~~L~~L~ls~n~l~~~ 283 (669)
...+|+.|++++|.+. .
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ 324 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-L 324 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-C
T ss_pred HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-c
Confidence 0123555555555554 3
Q ss_pred Ccccc-CCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCc
Q 040540 284 IPNTF-GNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFN 362 (669)
Q Consensus 284 ~p~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n 362 (669)
+|..+ ..+++|+.|++++|++++... .....+..+++|+.|++++|.+.+..+. +.....+++|+.+++++|
T Consensus 325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 325 VPCSFSQHLKSLEFLDLSENLMVEEYL-----KNSACKGAWPSLQTLVLSQNHLRSMQKT--GEILLTLKNLTSLDISRN 397 (549)
T ss_dssp CCHHHHHHCTTCCEEECCSSCCCHHHH-----HHHTCTTSSTTCCEEECTTSCCCCHHHH--HHHGGGCTTCCEEECTTC
T ss_pred CCHHHHhcCccccEEEccCCccccccc-----cchhhhhccccCcEEEccCCcccccccc--hhhhhcCCCCCEEECCCC
Confidence 44443 468899999999998865310 0012356678899999999988764321 111235778889999999
Q ss_pred ccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCCc
Q 040540 363 DLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPS 442 (669)
Q Consensus 363 ~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 442 (669)
.++ .+|..+..+++|+.|++++|.+... |..+ ..+|+.|++++|++++.. ..+++|++|++++|++. .+|.
T Consensus 398 ~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 398 TFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp CCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC
T ss_pred CCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC
Confidence 888 5677788888899999998887743 3322 257778888888777542 45677788888888776 5554
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6e-36 Score=333.00 Aligned_cols=371 Identities=20% Similarity=0.224 Sum_probs=276.2
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccC
Q 040540 55 ALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNN 134 (669)
Q Consensus 55 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 134 (669)
.++.++.++. .+|..+. +++++||+++|.+++..+..|.++++|++|+|++|++.+..|..|+++++|++|+|++|+
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp EEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 4666666665 4554443 579999999999998888899999999999999999998888899999999999999999
Q ss_pred ccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcc-cCCccccCCCCCCEEEccCCCCCCCCCc
Q 040540 135 FTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQG-QIPTEIGSLQNLKNLDLADNKLSGLIPP 213 (669)
Q Consensus 135 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 213 (669)
+++..|..|.++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..|+++++|++|++++|.+++..|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 998888999999999999999999987777689999999999999999987 5799999999999999999999998888
Q ss_pred cccCCCCC----cEEEcccCCCccccchhh--------------------------------------------------
Q 040540 214 TIFNISTM----RILTLESNQLSGRLPSTI-------------------------------------------------- 239 (669)
Q Consensus 214 ~~~~l~~L----~~L~l~~n~l~~~~p~~~-------------------------------------------------- 239 (669)
.+..+++| ..+++++|.+++..|..+
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred HccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 88888888 788888887764332211
Q ss_pred ------------------------------hccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCcc-cc
Q 040540 240 ------------------------------GHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPN-TF 288 (669)
Q Consensus 240 ------------------------------~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~~ 288 (669)
+..+++|++|++++|.+. .+|..+..+ +|+.|++++|.+. .+|. .+
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l 324 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKL 324 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBC
T ss_pred hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccc
Confidence 113466777777777765 466666666 6677777666665 2222 11
Q ss_pred -------------------CCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhc
Q 040540 289 -------------------GNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSA 349 (669)
Q Consensus 289 -------------------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 349 (669)
..+++|+.|++++|+++.... ....+..+++|+.|++++|.+.+..+. + .
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~~-~----~ 393 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC------CSQSDFGTTSLKYLDLSFNGVITMSSN-F----L 393 (570)
T ss_dssp SSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEE------EEHHHHTCSCCCEEECCSCSEEEEEEE-E----E
T ss_pred cccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccc------ccccccccCccCEEECCCCcccccccc-c----c
Confidence 456788888888888765421 012345667777777777776654432 2 2
Q ss_pred cccccceEeecCcccCCCCC-ccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccc-eeCcccccCCCCCC
Q 040540 350 SLQNIYAFELGFNDLNGTIP-TSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLS-GHIPPCLASLTSLR 427 (669)
Q Consensus 350 ~l~~l~~l~l~~n~l~~~~~-~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~-~~~p~~l~~l~~L~ 427 (669)
.+++|+.+++++|.+.+..+ ..+..+++|+.+++++|.+.+..|..+..+++|+.|++++|.+. +.+|..+..+++|+
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 35566667777666665544 34566666777777776666666666666666777777777665 45666666666777
Q ss_pred EEECCCCcceecCCc
Q 040540 428 ELHLGSNKLSSSIPS 442 (669)
Q Consensus 428 ~L~l~~N~l~~~~p~ 442 (669)
.|++++|++.+..|.
T Consensus 474 ~L~l~~n~l~~~~~~ 488 (570)
T 2z63_A 474 FLDLSQCQLEQLSPT 488 (570)
T ss_dssp EEECTTSCCCEECTT
T ss_pred EEECCCCccccCChh
Confidence 777777666655443
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.5e-35 Score=334.19 Aligned_cols=381 Identities=22% Similarity=0.216 Sum_probs=277.3
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
..++.|||++|.|++..+.+|.++++|++|||++|.|++..|.+|.++++|++|+|++|++.+..+..|+++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 57899999999999888889999999999999999999888889999999999999999999777788999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccc-cCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCC----EEEccCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGG-TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLK----NLDLADN 205 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~----~L~l~~N 205 (669)
++|++++..+..|+++++|++|++++|.+.+ .+|..++.+++|++|++++|++++..|..+..+.+++ .++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999998777889999999999999999976 5788999999999999999999988777665443322 3444444
Q ss_pred CCCCCCCc------------------------------------------------------------------------
Q 040540 206 KLSGLIPP------------------------------------------------------------------------ 213 (669)
Q Consensus 206 ~l~~~~p~------------------------------------------------------------------------ 213 (669)
.++...+.
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 33211100
Q ss_pred -------------------------------cccCCCCCcEEEcccCCCccccchhh------------------hccCC
Q 040540 214 -------------------------------TIFNISTMRILTLESNQLSGRLPSTI------------------GHSLR 244 (669)
Q Consensus 214 -------------------------------~~~~l~~L~~L~l~~n~l~~~~p~~~------------------~~~l~ 244 (669)
.+....+++.|++.+|.+.+..+..+ ...++
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 01122344555555554432111000 01367
Q ss_pred CCCeeecccCcccc--cCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCC
Q 040540 245 NIEYLALSTNNLIG--KIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTN 322 (669)
Q Consensus 245 ~L~~L~ls~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~ 322 (669)
+|+.|++++|.+.. ..+..+..+.+|+.++++.|.... .+..+..+++|+.+++..++...... ...+..
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~-------~~~~~~ 443 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-------FSVFLS 443 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTS-------SCTTTT
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccc-------cccccc
Confidence 88899999888743 345566677888888888887764 34456778888888887776654321 123456
Q ss_pred CCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccC-CCCCccccccCCCcEEecCCCcccccCchhhcCCCC
Q 040540 323 CRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLN-GTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLER 401 (669)
Q Consensus 323 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~-~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~ 401 (669)
+++++.++++.|.+.+..+..+. .+..++.+++++|.+. +..|..+..+++|+.|++++|.+++..|..|.++++
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~----~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~ 519 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTT----TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ccccccccccccccccccccccc----cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC
Confidence 67777777777777766554432 2456667777776533 345666777777777777777777777777777777
Q ss_pred CCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCCcc
Q 040540 402 LNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSS 443 (669)
Q Consensus 402 L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 443 (669)
|++|++++|++.+..|..++.+++|+.|++++|++++..|..
T Consensus 520 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp CCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred CCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 777777777777666666777777777777777777655543
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.4e-36 Score=330.88 Aligned_cols=340 Identities=19% Similarity=0.235 Sum_probs=292.4
Q ss_pred CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCc-cCCccccCCcccccc
Q 040540 50 HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG-SFPSWIGVLSKLRIL 128 (669)
Q Consensus 50 ~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L 128 (669)
..+++.|++++|.+++..|..|+++++|++|||++|.++ .+|.. .+++|++|+|++|++.+ .+|..|+++++|++|
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 467999999999999998999999999999999999998 45655 89999999999999987 578999999999999
Q ss_pred cccccCccccCCcccCCCCCC--Ceeecccccc--cccCCcccCCCC---------------------------------
Q 040540 129 RLDYNNFTGPIPNSLFNLSRL--EMLRAEFNII--GGTIPSRIGNLR--------------------------------- 171 (669)
Q Consensus 129 ~L~~n~l~~~~p~~~~~l~~L--~~L~l~~n~l--~~~~p~~~~~L~--------------------------------- 171 (669)
+|++|.+++ ..+..+++| +.|++++|.+ .+..|..+..+.
T Consensus 121 ~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 197 (520)
T 2z7x_B 121 GLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197 (520)
T ss_dssp EEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCE
T ss_pred EecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccc
Confidence 999999986 457777888 9999999999 777777776644
Q ss_pred --------------------------------------------------CCCEEEcccCCCcccCCccc-----cCCCC
Q 040540 172 --------------------------------------------------KLVNLGLWSCNLQGQIPTEI-----GSLQN 196 (669)
Q Consensus 172 --------------------------------------------------~L~~L~l~~n~l~~~~p~~~-----~~l~~ 196 (669)
+|++|++++|++++.+|..+ +.+++
T Consensus 198 ~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~ 277 (520)
T 2z7x_B 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277 (520)
T ss_dssp EECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCE
T ss_pred cccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCce
Confidence 78888999999998999988 89999
Q ss_pred CCEEEccCCCCCCCCC-ccccCC---CCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCE
Q 040540 197 LKNLDLADNKLSGLIP-PTIFNI---STMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIG 272 (669)
Q Consensus 197 L~~L~l~~N~l~~~~p-~~~~~l---~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~ 272 (669)
|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+ ++ +...+++|++|++++|++.+..|..+..+++|+.
T Consensus 278 L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 352 (520)
T 2z7x_B 278 LSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH-ML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352 (520)
T ss_dssp EEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCE
T ss_pred eEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc-cc--chhhCCcccEEEeECCccChhhhhhhccCCCCCE
Confidence 99999999999 456 555555 789999999999863 22 1136889999999999999989999999999999
Q ss_pred EeCCCCCccc--cCccccCCCCCCCEEEccCCcccc-CCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhc
Q 040540 273 LDLGFNSFSG--HIPNTFGNLRHLSVLNVMMNNLTT-ESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSA 349 (669)
Q Consensus 273 L~ls~n~l~~--~~p~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 349 (669)
|++++|.+.+ .+|..+..+++|+.|++++|.+.+ .+. ..+..+++|+.|++++|.+.+..|..+
T Consensus 353 L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~l----- 419 (520)
T 2z7x_B 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK--------GDCSWTKSLLSLNMSSNILTDTIFRCL----- 419 (520)
T ss_dssp EECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG--------CSCCCCTTCCEEECCSSCCCGGGGGSC-----
T ss_pred EEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc--------chhccCccCCEEECcCCCCCcchhhhh-----
Confidence 9999999986 566789999999999999999987 421 235677899999999999987665432
Q ss_pred cccccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCcccee
Q 040540 350 SLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGH 415 (669)
Q Consensus 350 ~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~ 415 (669)
..+|+.+++++|.++ .+|..+..+++|+.+++++|.++...+..+..+++|+.|++++|.+.+.
T Consensus 420 -~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 420 -PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp -CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred -cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 167999999999999 6788778999999999999999964444488999999999999999764
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.4e-35 Score=315.86 Aligned_cols=355 Identities=21% Similarity=0.254 Sum_probs=279.4
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccC-CccccCCcccccccccccC
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF-PSWIGVLSKLRILRLDYNN 134 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~ 134 (669)
++.+++++. .+|. + .++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ |..|.++++|++|+|++|+
T Consensus 15 ~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 15 AICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 555556664 3444 2 278999999999999988999999999999999999997655 5789999999999999999
Q ss_pred ccccCCcccCCCCCCCeeecccccccccCCcc--cCCCCCCCEEEcccCCCcccCCcc-ccCCCCCCEEEccCCCCCCCC
Q 040540 135 FTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSR--IGNLRKLVNLGLWSCNLQGQIPTE-IGSLQNLKNLDLADNKLSGLI 211 (669)
Q Consensus 135 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~L~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~~ 211 (669)
+++..|..++++++|++|++++|.+.+..|.. ++++++|++|++++|.+.+..|.. +..+++|++|++++|.+++..
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 99888999999999999999999998866555 899999999999999999887776 788999999999999999888
Q ss_pred CccccCC--CCCcEEEcccCCCccccchhhh-------ccCCCCCeeecccCcccccCCccccCC---CCCCEEeCCCCC
Q 040540 212 PPTIFNI--STMRILTLESNQLSGRLPSTIG-------HSLRNIEYLALSTNNLIGKIPNSITNA---TKLIGLDLGFNS 279 (669)
Q Consensus 212 p~~~~~l--~~L~~L~l~~n~l~~~~p~~~~-------~~l~~L~~L~ls~n~l~~~~p~~~~~l---~~L~~L~ls~n~ 279 (669)
|..+..+ .+++.|++++|.+.+..+..+. ..+++|++|++++|++.+..|..+... ++|+.|++++|.
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 8887776 5778888888887643222111 123556666666666665555544332 555666666555
Q ss_pred ccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEee
Q 040540 280 FSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFEL 359 (669)
Q Consensus 280 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l 359 (669)
..+.... .+.+....... +. -...++|+.|++++|.+.+..|..+. .+++|+.+++
T Consensus 251 ~~~~~~~--------------~~~~~~~~~~~-----~~-~~~~~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L 306 (455)
T 3v47_A 251 NMGSSFG--------------HTNFKDPDNFT-----FK-GLEASGVKTCDLSKSKIFALLKSVFS----HFTDLEQLTL 306 (455)
T ss_dssp TTSCCTT--------------CCSSCCCCTTT-----TG-GGTTSCCCEEECCSSCCCEECTTTTT----TCTTCCEEEC
T ss_pred ccccccc--------------hhhhccCcccc-----cc-cccccCceEEEecCccccccchhhcc----cCCCCCEEEC
Confidence 4332110 01111110000 00 11347899999999999988777654 3678999999
Q ss_pred cCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCccee
Q 040540 360 GFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSS 438 (669)
Q Consensus 360 ~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 438 (669)
++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..|..+..+++|++|++++|++.+
T Consensus 307 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence 9999999889999999999999999999999889999999999999999999999999999999999999999999985
No 26
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-37 Score=309.11 Aligned_cols=198 Identities=22% Similarity=0.361 Sum_probs=154.9
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+.|.+|+.++++++|||||+++++|.. +..+||||||++|+|.++|+.....++|.++..|+.|+|+||+|||.
T Consensus 76 ~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~---- 150 (307)
T 3omv_A 76 FQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHA---- 150 (307)
T ss_dssp HHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 4568899999999999999999998865 45789999999999999998766789999999999999999999995
Q ss_pred CCeeecCCCCcc---------------------------cccccccccccCccccccC---CCcCccccchhhHHHHHHH
Q 040540 526 APIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSE---GIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 526 ~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gvil~el 575 (669)
.+|||||+|+.. .....+||+.|||||++.+ +.|+.|+|||||||++|||
T Consensus 151 ~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~El 230 (307)
T 3omv_A 151 KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 230 (307)
T ss_dssp TTCBCSCCCSSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHH
Confidence 479999999540 1122369999999999853 4589999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
+||+.||..... ...+...+...... +.+.. .+.+++..+.+++.+||+.||++||||.||++.|+
T Consensus 231 ltg~~Pf~~~~~-~~~~~~~~~~~~~~-------p~~~~------~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le 296 (307)
T 3omv_A 231 MTGELPYSHINN-RDQIIFMVGRGYAS-------PDLSK------LYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 296 (307)
T ss_dssp HHSSCTTTTCCC-HHHHHHHHHTTCCC-------CCSTT------SCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHH
T ss_pred HHCCCCCCCCCh-HHHHHHHHhcCCCC-------CCccc------ccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHH
Confidence 999999976321 11222222222111 11110 12234567889999999999999999999999999
Q ss_pred HhHHHhh
Q 040540 656 KIKVKFL 662 (669)
Q Consensus 656 ~~~~~~~ 662 (669)
.++..++
T Consensus 297 ~l~~~lp 303 (307)
T 3omv_A 297 LLQHSLP 303 (307)
T ss_dssp HHHTTCC
T ss_pred HHhccCC
Confidence 8876543
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.9e-34 Score=307.14 Aligned_cols=344 Identities=28% Similarity=0.434 Sum_probs=297.3
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|+++++++.. +| .+..+++|++|++++|.+.+..| +.++++|++|++++|++.+..| ++++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 468999999999875 44 48899999999999999987654 9999999999999999986554 999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|.+++..+ +.++++|++|++++|.+.+. + .++.+++|++|+++ |.+.+..+ +..+++|++|++++|.+++.
T Consensus 120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCCC
Confidence 9999986543 89999999999999998863 3 58999999999996 55554433 89999999999999999864
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
..+..+++|++|++++|.+++..| +. .+++|++|++++|++.+. ..+..+++|+.|++++|.+.+..+ +..
T Consensus 193 --~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 193 --SVLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred --hhhccCCCCCEEEecCCccccccc--cc-ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 458899999999999999986555 33 589999999999998764 468889999999999999987655 889
Q ss_pred CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCc
Q 040540 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPT 370 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~ 370 (669)
+++|+.|++++|.+++.+ .+..+++|+.|++++|.+.+..+ + ..+++|+.+++++|.+.+..|
T Consensus 264 l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~L~~n~l~~~~~--~----~~l~~L~~L~L~~n~l~~~~~- 326 (466)
T 1o6v_A 264 LTKLTELKLGANQISNIS----------PLAGLTALTNLELNENQLEDISP--I----SNLKNLTYLTLYFNNISDISP- 326 (466)
T ss_dssp CTTCSEEECCSSCCCCCG----------GGTTCTTCSEEECCSSCCSCCGG--G----GGCTTCSEEECCSSCCSCCGG-
T ss_pred CCCCCEEECCCCccCccc----------cccCCCccCeEEcCCCcccCchh--h----cCCCCCCEEECcCCcCCCchh-
Confidence 999999999999987642 26678999999999999987654 2 347889999999999998766
Q ss_pred cccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCccee
Q 040540 371 SIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSS 438 (669)
Q Consensus 371 ~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 438 (669)
+..+++|+.+++++|.+.+. ..+..+++|+.|++++|++.+..| +..+++|+.|++++|++.+
T Consensus 327 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred -hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 78899999999999999876 468899999999999999998776 7899999999999999986
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.1e-35 Score=323.17 Aligned_cols=343 Identities=19% Similarity=0.228 Sum_probs=285.1
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57999999999999888889999999999999999999999999999999999999999998 57766 8999999999
Q ss_pred cccCccc-cCCcccCCCCCCCeeecccccccccCCcccCCCCCC--CEEEcccCCC--cccCCccccCCC----------
Q 040540 131 DYNNFTG-PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL--VNLGLWSCNL--QGQIPTEIGSLQ---------- 195 (669)
Q Consensus 131 ~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L--~~L~l~~n~l--~~~~p~~~~~l~---------- 195 (669)
++|++++ ..|..++++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999997 4578999999999999999998764 34555555 9999999998 777776665543
Q ss_pred -----------------------------------------------------------------------CCCEEEccC
Q 040540 196 -----------------------------------------------------------------------NLKNLDLAD 204 (669)
Q Consensus 196 -----------------------------------------------------------------------~L~~L~l~~ 204 (669)
+|++|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 678888888
Q ss_pred CCCCCCCCccc-----cCCC--------------------------CCcEEEcccCCCccccchhhhccCCCCCeeeccc
Q 040540 205 NKLSGLIPPTI-----FNIS--------------------------TMRILTLESNQLSGRLPSTIGHSLRNIEYLALST 253 (669)
Q Consensus 205 N~l~~~~p~~~-----~~l~--------------------------~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~ 253 (669)
|.++|.+|..+ .+++ +|+.|++++|.+.. ++ +...+++|++|++++
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~-~~--~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH-MV--CPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCS
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccc-cc--CccCCCCceEEECCC
Confidence 88888888876 3333 35566666665532 11 113688999999999
Q ss_pred CcccccCCccccCCCCCCEEeCCCCCcccc--CccccCCCCCCCEEEccCCcccc-CCCCCcccccccccCCCCCCCEEE
Q 040540 254 NNLIGKIPNSITNATKLIGLDLGFNSFSGH--IPNTFGNLRHLSVLNVMMNNLTT-ESSSADQWSFLSSLTNCRNLSNLA 330 (669)
Q Consensus 254 n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~--~p~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~~~l~~l~~L~~L~ 330 (669)
|++.+..|..+..+++|+.|++++|.+.+. +|..|.++++|+.|++++|++++ .+. ..+..+++|+.|+
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--------~~~~~l~~L~~L~ 434 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD--------RTCAWAESILVLN 434 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS--------CCCCCCTTCCEEE
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh--------hhhcCcccCCEEE
Confidence 999999999999999999999999999873 45678999999999999999987 432 2356778999999
Q ss_pred CcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCC
Q 040540 331 LASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGN 410 (669)
Q Consensus 331 l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n 410 (669)
+++|.+.+..|..+ ..+|+.+++++|.++ .+|..+..+++|+.|++++|.++...+..+..+++|+.|++++|
T Consensus 435 l~~n~l~~~~~~~l------~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 435 LSSNMLTGSVFRCL------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CCSSCCCGGGGSSC------CTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CCCCCCCcchhhhh------cCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 99999987655322 157999999999998 56776779999999999999999544444889999999999999
Q ss_pred ccceeCc
Q 040540 411 KLSGHIP 417 (669)
Q Consensus 411 ~l~~~~p 417 (669)
.+.+..+
T Consensus 508 ~~~c~c~ 514 (562)
T 3a79_B 508 PWDCTCP 514 (562)
T ss_dssp CBCCCHH
T ss_pred CcCCCcc
Confidence 9876443
No 29
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=1.3e-36 Score=305.24 Aligned_cols=192 Identities=24% Similarity=0.399 Sum_probs=157.2
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC------------CCccCHHHHHHHHHhHH
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH------------NYFLDILERLNIMIDVG 513 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~------------~~~l~~~~~~~i~~~i~ 513 (669)
.+.|.+|+.++++++|||||+++++|..++..++|||||++|+|.++|+.. ...++|.++..|+.|+|
T Consensus 59 ~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia 138 (299)
T 4asz_A 59 RKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIA 138 (299)
T ss_dssp HHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999999753 24689999999999999
Q ss_pred hhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccch
Q 040540 514 SALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVY 566 (669)
Q Consensus 514 ~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~ 566 (669)
+||+|||. .+|+|||+|+.. ......||+.|||||++.+..|+.|+|||
T Consensus 139 ~gl~yLH~----~~iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVw 214 (299)
T 4asz_A 139 AGMVYLAS----QHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVW 214 (299)
T ss_dssp HHHHHHHH----TTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHh----CCcccCccCHhhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHH
Confidence 99999995 479999999530 01123589999999999999999999999
Q ss_pred hhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 567 SYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 567 s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
||||++|||+| |+.||.... ...+...+...... +.+..++.++.+++.+||+.||++||
T Consensus 215 S~Gvvl~Ellt~G~~Pf~~~~--~~~~~~~i~~~~~~-----------------~~p~~~~~~~~~li~~cl~~dP~~RP 275 (299)
T 4asz_A 215 SLGVVLWEIFTYGKQPWYQLS--NNEVIECITQGRVL-----------------QRPRTCPQEVYELMLGCWQREPHMRK 275 (299)
T ss_dssp HHHHHHHHHHTTTCCTTTTSC--HHHHHHHHHHTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred HHHHHHHHHHcCCCCCCCCCC--HHHHHHHHHcCCCC-----------------CCCccchHHHHHHHHHHcCCChhHCc
Confidence 99999999999 899997642 22233333332111 11223445688999999999999999
Q ss_pred CHHHHHHHHHHhHHH
Q 040540 646 HMTDAAAKLKKIKVK 660 (669)
Q Consensus 646 s~~~v~~~l~~~~~~ 660 (669)
||+||.+.|+++...
T Consensus 276 s~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 276 NIKGIHTLLQNLAKA 290 (299)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999988654
No 30
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=307.17 Aligned_cols=192 Identities=23% Similarity=0.391 Sum_probs=156.6
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC--------------CccCHHHHHHHHHh
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN--------------YFLDILERLNIMID 511 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~--------------~~l~~~~~~~i~~~ 511 (669)
.+.|.+|+.++++++|||||+++++|......+||||||++|+|.++++... .+++|.++.+|+.|
T Consensus 87 ~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~q 166 (329)
T 4aoj_A 87 RQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQ 166 (329)
T ss_dssp HHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999997532 35899999999999
Q ss_pred HHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCcccc
Q 040540 512 VGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCD 564 (669)
Q Consensus 512 i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~D 564 (669)
+|+||+|||. .+|||||+|+.. ......||+.|||||++.+..|+.|+|
T Consensus 167 ia~gl~yLH~----~~iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sD 242 (329)
T 4aoj_A 167 VAAGMVYLAG----LHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESD 242 (329)
T ss_dssp HHHHHHHHHH----TTCCCSCCCGGGEEEETTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHH
T ss_pred HHHHHHHHhc----CCeecccccHhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCcccc
Confidence 9999999995 479999999530 012235899999999999999999999
Q ss_pred chhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 565 VYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 565 v~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||||||++|||+| |+.||.... ...+...+....+. +.+..++.++.+++.+||+.||++
T Consensus 243 vwS~Gvvl~Ellt~G~~Pf~~~~--~~~~~~~i~~g~~~-----------------~~p~~~~~~~~~li~~cl~~dP~~ 303 (329)
T 4aoj_A 243 VWSFGVVLWEIFTYGKQPWYQLS--NTEAIDCITQGREL-----------------ERPRACPPEVYAIMRGCWQREPQQ 303 (329)
T ss_dssp HHHHHHHHHHHHTTSCCTTCSSC--HHHHHHHHHHTCCC-----------------CCCTTCCHHHHHHHHHHCCSSTTT
T ss_pred ccchHHHHHHHHcCCCCCCCCCC--HHHHHHHHHcCCCC-----------------CCcccccHHHHHHHHHHcCcChhH
Confidence 9999999999999 899997642 22233333332111 112234456889999999999999
Q ss_pred CCCHHHHHHHHHHhHHH
Q 040540 644 RMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 644 Rps~~~v~~~l~~~~~~ 660 (669)
||||+||++.|+.+.+.
T Consensus 304 RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 304 RHSIKDVHARLQALAQA 320 (329)
T ss_dssp SCCHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhhC
Confidence 99999999999998764
No 31
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=2.1e-36 Score=305.12 Aligned_cols=188 Identities=20% Similarity=0.382 Sum_probs=154.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC---------------CCccCHHHHHHHHHh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---------------NYFLDILERLNIMID 511 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~---------------~~~l~~~~~~~i~~~ 511 (669)
+.|.+|+.++++++|||||+++|+|..+...++|||||++|+|.++|+.+ ...++|.++.+|+.|
T Consensus 74 ~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~q 153 (308)
T 4gt4_A 74 EEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQ 153 (308)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999642 235899999999999
Q ss_pred HHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCcccc
Q 040540 512 VGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCD 564 (669)
Q Consensus 512 i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~D 564 (669)
||+||+|||. .+|||||+|+.. ......||+.|||||++.++.|+.|+|
T Consensus 154 ia~gl~yLH~----~~iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksD 229 (308)
T 4gt4_A 154 IAAGMEYLSS----HHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSD 229 (308)
T ss_dssp HHHHHHHHHH----TTCCCSCCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHH
T ss_pred HHHHHHHHHh----CCCCCCCccccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccch
Confidence 9999999995 479999999430 112235899999999999999999999
Q ss_pred chhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 565 VYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 565 v~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||||||++|||+| |+.||.+.. ...+...+..... .+.+.+++..+.+++.+||+.||++
T Consensus 230 VwSfGvvl~El~t~g~~Pf~~~~--~~~~~~~i~~~~~-----------------~~~p~~~~~~~~~li~~C~~~dP~~ 290 (308)
T 4gt4_A 230 IWSYGVVLWEVFSYGLQPYCGYS--NQDVVEMIRNRQV-----------------LPCPDDCPAWVYALMIECWNEFPSR 290 (308)
T ss_dssp HHHHHHHHHHHHTTTCCTTTTCC--HHHHHHHHHTTCC-----------------CCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred hhhHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHcCCC-----------------CCCcccchHHHHHHHHHHcCCChhH
Confidence 9999999999999 899997642 2233333332211 1113345567889999999999999
Q ss_pred CCCHHHHHHHHHHh
Q 040540 644 RMHMTDAAAKLKKI 657 (669)
Q Consensus 644 Rps~~~v~~~l~~~ 657 (669)
||||+||++.|+..
T Consensus 291 RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 291 RPRFKDIHSRLRAW 304 (308)
T ss_dssp SCCHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHhc
Confidence 99999999999865
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.1e-34 Score=320.00 Aligned_cols=373 Identities=21% Similarity=0.186 Sum_probs=295.4
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCc
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNF 135 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 135 (669)
.+-++.+++ .+|..+. +++++|||++|.|++..|..|.++++|++|+|++|+|++..|..|+++++|++|+|++|++
T Consensus 36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 455666665 4565442 4799999999999988888999999999999999999988888999999999999999999
Q ss_pred cccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcc-cCCccccCCCCCCEEEccCCCCCCCCCcc
Q 040540 136 TGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQG-QIPTEIGSLQNLKNLDLADNKLSGLIPPT 214 (669)
Q Consensus 136 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 214 (669)
++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++ .+|..++.+++|++|++++|.+++..|..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 98777889999999999999999998888889999999999999999976 46888999999999999999999988887
Q ss_pred ccCCCCCc----EEEcccCCCccc-----------------------cchhh----------------------------
Q 040540 215 IFNISTMR----ILTLESNQLSGR-----------------------LPSTI---------------------------- 239 (669)
Q Consensus 215 ~~~l~~L~----~L~l~~n~l~~~-----------------------~p~~~---------------------------- 239 (669)
+..+.+++ .++++.|.+... ++...
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 272 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 272 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred ccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence 76544332 344444433210 00000
Q ss_pred ---------------------------------------------------hccCCCCCeeecccCcccccCCc------
Q 040540 240 ---------------------------------------------------GHSLRNIEYLALSTNNLIGKIPN------ 262 (669)
Q Consensus 240 ---------------------------------------------------~~~l~~L~~L~ls~n~l~~~~p~------ 262 (669)
......++.|++++|.+.+..+.
T Consensus 273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~ 352 (635)
T 4g8a_A 273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 352 (635)
T ss_dssp TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCC
T ss_pred cccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhh
Confidence 00122455666666655433221
Q ss_pred -------------cccCCCCCCEEeCCCCCccc--cCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCC
Q 040540 263 -------------SITNATKLIGLDLGFNSFSG--HIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLS 327 (669)
Q Consensus 263 -------------~~~~l~~L~~L~ls~n~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~ 327 (669)
....+++|+.++++.|.+.. ..+..+..+.+|+.+++..|...... ..+..+++|+
T Consensus 353 ~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~---------~~~~~l~~L~ 423 (635)
T 4g8a_A 353 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS---------SNFLGLEQLE 423 (635)
T ss_dssp EEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC---------SCCTTCTTCC
T ss_pred hcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc---------cccccccccc
Confidence 22356789999999998753 45566778889999999888765542 3356788999
Q ss_pred EEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCccc-ccCchhhcCCCCCCeee
Q 040540 328 NLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQ-GYVPHDLCHLERLNILN 406 (669)
Q Consensus 328 ~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~-~~~p~~~~~l~~L~~L~ 406 (669)
.+++..+......+.. .+..+..+..++++.|.+.+..+..+..++.++.+++++|.+. +..|..+..+++|+.|+
T Consensus 424 ~l~l~~~~~~~~~~~~---~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~ 500 (635)
T 4g8a_A 424 HLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500 (635)
T ss_dssp EEECTTSEEESTTSSC---TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred chhhhhcccccccccc---ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEE
Confidence 9999988776554322 1235778899999999999999999999999999999999754 45778899999999999
Q ss_pred CcCCccceeCcccccCCCCCCEEECCCCcceecCCcc
Q 040540 407 LSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSS 443 (669)
Q Consensus 407 ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 443 (669)
+++|++.+..|..|+.+++|++|++++|++.+..|..
T Consensus 501 Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~ 537 (635)
T 4g8a_A 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537 (635)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGG
T ss_pred CCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhH
Confidence 9999999999999999999999999999998765543
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.9e-33 Score=301.80 Aligned_cols=349 Identities=17% Similarity=0.224 Sum_probs=279.0
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|++.+. | ++++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 5789999999999975 4 799999999999999999974 4 89999999999999999974 4 899999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|++++ +| ++.+++|++|++++|.+++. + ++.+++|++|++++|...+.+ .++.+++|++|++++|.+++.
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 9999997 44 89999999999999999874 3 889999999999999776666 488999999999999999984
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
| +..+++|+.|++++|.+++. + +. .+++|++|++++|++.+ +| +..+++|+.|++++|.+.+.. +..
T Consensus 186 -~--l~~l~~L~~L~l~~N~l~~~-~--l~-~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~ 252 (457)
T 3bz5_A 186 -D--VSQNKLLNRLNCDTNNITKL-D--LN-QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VST 252 (457)
T ss_dssp -C--CTTCTTCCEEECCSSCCSCC-C--CT-TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred -c--cccCCCCCEEECcCCcCCee-c--cc-cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHH
Confidence 4 88999999999999999864 3 43 68999999999999988 55 889999999999999999764 456
Q ss_pred CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhh----hccccccceEeecCcccCC
Q 040540 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNF----SASLQNIYAFELGFNDLNG 366 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~----~~~l~~l~~l~l~~n~l~~ 366 (669)
+++|+.|+++.|+++...-........-....+++|+.|++++|...+.+|...... ....++|+.+++++|.+++
T Consensus 253 l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 253 LSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred CCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 677888888877776553322211111124678999999999998877666422111 1223567777788888777
Q ss_pred CCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceecCCccc
Q 040540 367 TIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSSIPSSL 444 (669)
Q Consensus 367 ~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~ 444 (669)
. .+..+++|+.+++++|.+++ ++.|..|++++|.+.|. +.+..|..+++++|+++|.+|..+
T Consensus 333 l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 333 L---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp C---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred c---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 3 26777778888888887765 24566667777777765 245578888999999999999754
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=307.56 Aligned_cols=302 Identities=18% Similarity=0.178 Sum_probs=165.4
Q ss_pred CCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeec
Q 040540 75 SFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRA 154 (669)
Q Consensus 75 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 154 (669)
+++++|+|++|.+++..|..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 35566666666666555555666666666666666666555566666666666666666665444445556666666666
Q ss_pred ccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccc
Q 040540 155 EFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGR 234 (669)
Q Consensus 155 ~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (669)
++|.+.+..|..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..+.++++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 66666655555666666666666666666655555566666666666666666555445555566666666666655532
Q ss_pred cchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCccc
Q 040540 235 LPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQW 314 (669)
Q Consensus 235 ~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 314 (669)
.+..+ ..+++|++|++++|...+.+|.......+|+.|++++|.+.+..+..|..+++|+.|++++|.+++...
T Consensus 192 ~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----- 265 (477)
T 2id5_A 192 RDYSF-KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG----- 265 (477)
T ss_dssp CTTCS-CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT-----
T ss_pred Chhhc-ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh-----
Confidence 22222 245556666666555555555544444556666666665554333455555666666666555544321
Q ss_pred ccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCccc
Q 040540 315 SFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQ 389 (669)
Q Consensus 315 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~ 389 (669)
..+..+++|+.|++++|.+.+..+..+. .+++|+.+++++|.+++..+..|..+++|+.+++++|.+.
T Consensus 266 ---~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 266 ---SMLHELLRLQEIQLVGGQLAVVEPYAFR----GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ---TSCTTCTTCCEEECCSSCCSEECTTTBT----TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ---hhccccccCCEEECCCCccceECHHHhc----CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 1234445555555555555444333221 1334444444444444433344444455555555555544
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.2e-34 Score=307.97 Aligned_cols=304 Identities=18% Similarity=0.171 Sum_probs=277.1
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
..++.|+|++|++.+..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++.+..+..|.++++|++|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 57899999999999988889999999999999999999999999999999999999999999766778999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|++++..|..+.++++|+.|++++|.+.+..|..|.++++|++|++++|++++..+..+..+++|+.|++++|.+++.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 99999999999999999999999999999999999999999999999999999987778899999999999999999998
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
.+..+..+++|+.|++++|...+.+|...+ ...+|++|++++|++.+..+..+..+++|+.|++++|.+.+..+..|..
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred ChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 888999999999999999998888888776 3569999999999998665578899999999999999999888888999
Q ss_pred CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCC
Q 040540 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGT 367 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~ 367 (669)
+++|+.|++++|++++... ..+..+++|+.|++++|.+++..+..+ ..+.+|+.+++++|.+...
T Consensus 271 l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEP--------YAFRGLNYLRVLNVSGNQLTTLEESVF----HSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CTTCCEEECCSSCCSEECT--------TTBTTCTTCCEEECCSSCCSCCCGGGB----SCGGGCCEEECCSSCEECS
T ss_pred cccCCEEECCCCccceECH--------HHhcCcccCCEEECCCCcCceeCHhHc----CCCcccCEEEccCCCccCc
Confidence 9999999999999987632 346788999999999999997665543 3467899999999998754
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.2e-34 Score=295.84 Aligned_cols=278 Identities=23% Similarity=0.292 Sum_probs=183.6
Q ss_pred CCChhhHHHHHHHHhhc-CCCcccccCCC----CCCCCCCCccceeeCC--------CCCCEEEEEcCCCCCcccccccc
Q 040540 5 NDLTTDQSSLLAFKAHA-FDYRSALANNW----SISYPICSWAGISCGS--------RHQRVTALNLSDMGLGGTIPLHF 71 (669)
Q Consensus 5 ~~~~~~~~~l~~~~~~~-~~~~~~l~~~w----~~~~~~c~~~g~~c~~--------~~~~v~~L~ls~~~l~~~~~~~~ 71 (669)
.+..+|++||++||.++ .++.+.+.. | ....++|.|.|+.|.. ...+|+.|++++|++. .+|..+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~-w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHH-HHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhh-hcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 35667899999999988 456555554 8 3456799999999842 2467899999999987 777788
Q ss_pred cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 72 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
+.+++|++|+|++|.+. .+|..++.+++|++|+|++|++. .+|..++++++|++|+|++|++.+.+|..++..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~----- 173 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST----- 173 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE-----
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc-----
Confidence 88999999999999988 78888889999999999999988 778888999999999999988888888776540
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l 231 (669)
..+..+.++++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..+..+++|++|++++|.+
T Consensus 174 ----------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 174 ----------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp ----------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTT
T ss_pred ----------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcc
Confidence 01122333444444444444444 444444445555555555555543 333444555555555555554
Q ss_pred ccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCcc
Q 040540 232 SGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNL 304 (669)
Q Consensus 232 ~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l 304 (669)
.+.+|..+. .+++|++|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.+++..+.+
T Consensus 242 ~~~~p~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 242 LRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CCBCCCCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhhhHHHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 444444443 355555555555555555555555555566666666555555666666666666666554433
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.5e-33 Score=302.22 Aligned_cols=335 Identities=23% Similarity=0.295 Sum_probs=163.5
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCC-------------CEEEccCCcCCccCCcc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRL-------------RVMSLAYNKLSGSFPSW 118 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------------~~L~L~~n~l~~~~p~~ 118 (669)
+++.|++++|.+ |.+|.+++++++|++|++++|.+.|.+|..++++++| ++|++++|.+++ +|..
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~ 89 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence 456666666666 5666666666666666666666666666666655543 556666555553 2321
Q ss_pred ccCCcccccccccccCccccCCccc----------------CCC-CCCCeeecccccccccCCcccCCCCCCCEEEcccC
Q 040540 119 IGVLSKLRILRLDYNNFTGPIPNSL----------------FNL-SRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSC 181 (669)
Q Consensus 119 ~~~l~~L~~L~L~~n~l~~~~p~~~----------------~~l-~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n 181 (669)
.++|++|++++|.+++ +|..+ ..+ ++|++|++++|.+.+ +| .++++++|++|++++|
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred ---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence 2445555555555554 33221 011 345555555555543 44 3555555555555555
Q ss_pred CCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCC
Q 040540 182 NLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIP 261 (669)
Q Consensus 182 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p 261 (669)
++++ +|..+ .+|++|++++|.+++ +| .+.++++|+.|++++|.+++ +|.. ..+|++|++++|++. .+|
T Consensus 164 ~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-~lp 231 (454)
T 1jl5_A 164 SLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE-ELP 231 (454)
T ss_dssp CCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS-SCC
T ss_pred cCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC-ccc
Confidence 5543 33322 345555555555554 23 35555555555555555542 3321 234555555555554 334
Q ss_pred ccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccc
Q 040540 262 NSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILP 341 (669)
Q Consensus 262 ~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 341 (669)
.+..+++|+.|++++|.+.+ +|.. .++|+.|++++|++++.+. ..++|+.|++++|.+.+..
T Consensus 232 -~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~~------------~~~~L~~L~ls~N~l~~l~- 293 (454)
T 1jl5_A 232 -ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDLPE------------LPQSLTFLDVSENIFSGLS- 293 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSSCCSEES-
T ss_pred -ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccccCc------------ccCcCCEEECcCCccCccc-
Confidence 25555555555555555543 2221 2455555555555544321 1245666666666666521
Q ss_pred hhHhhhhccccccceEeecCcccCCCCCcccccc-CCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccc
Q 040540 342 QLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTL-QQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCL 420 (669)
Q Consensus 342 ~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l-~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l 420 (669)
. ...+++.+++++|.+.+. ..+ .+|+.+++++|.+.+ +|.. +++|+.|++++|++.+ +|.
T Consensus 294 ~-------~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~-- 354 (454)
T 1jl5_A 294 E-------LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE-- 354 (454)
T ss_dssp C-------CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC--
T ss_pred C-------cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc--
Confidence 0 013455566666665531 122 366777777777765 4432 4667777777777763 444
Q ss_pred cCCCCCCEEECCCCccee--cCCccc
Q 040540 421 ASLTSLRELHLGSNKLSS--SIPSSL 444 (669)
Q Consensus 421 ~~l~~L~~L~l~~N~l~~--~~p~~~ 444 (669)
.+++|+.|++++|++.+ .+|..+
T Consensus 355 -~l~~L~~L~L~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNPLREFPDIPESV 379 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred -hhhhccEEECCCCCCCcCCCChHHH
Confidence 35677777777777776 555543
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4e-32 Score=293.77 Aligned_cols=323 Identities=27% Similarity=0.396 Sum_probs=279.8
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+. |. +.++++|++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEEC
Confidence 579999999999987655 9999999999999999987655 99999999999999999865 33 899999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|.+++ ++ .+..+++|+.|+++ |.+.+.. .+.++++|++|++++|.+.+. ..+..+++|++|++++|.+++.
T Consensus 142 ~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 142 SSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp EEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccc
Confidence 9999985 33 58999999999997 4454433 389999999999999999754 3488999999999999999987
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
.| +..+++|+.|++++|.+++ ++ .+. .+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..
T Consensus 215 ~~--~~~l~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~ 285 (466)
T 1o6v_A 215 TP--LGILTNLDELSLNGNQLKD-IG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285 (466)
T ss_dssp GG--GGGCTTCCEEECCSSCCCC-CG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred cc--ccccCCCCEEECCCCCccc-ch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC
Confidence 55 7889999999999999974 43 343 68999999999999987655 8899999999999999987554 889
Q ss_pred CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCc
Q 040540 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPT 370 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~ 370 (669)
+++|+.|++++|++++.+ .+..+++|+.|++++|.+.+..| + ..+++|+.+++++|.+.+. .
T Consensus 286 l~~L~~L~L~~n~l~~~~----------~~~~l~~L~~L~L~~n~l~~~~~--~----~~l~~L~~L~l~~n~l~~~--~ 347 (466)
T 1o6v_A 286 LTALTNLELNENQLEDIS----------PISNLKNLTYLTLYFNNISDISP--V----SSLTKLQRLFFYNNKVSDV--S 347 (466)
T ss_dssp CTTCSEEECCSSCCSCCG----------GGGGCTTCSEEECCSSCCSCCGG--G----GGCTTCCEEECCSSCCCCC--G
T ss_pred CCccCeEEcCCCcccCch----------hhcCCCCCCEEECcCCcCCCchh--h----ccCccCCEeECCCCccCCc--h
Confidence 999999999999987642 25678999999999999998765 2 3478899999999999875 4
Q ss_pred cccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCcccee
Q 040540 371 SIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGH 415 (669)
Q Consensus 371 ~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~ 415 (669)
.+..+++|+.+++++|.+.+..| +..+++|+.|++++|.+++.
T Consensus 348 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 348 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 78899999999999999998887 88999999999999999863
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.8e-32 Score=289.59 Aligned_cols=312 Identities=19% Similarity=0.186 Sum_probs=210.3
Q ss_pred cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 72 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
..++++++|++++|.+....+..|..+++|++|++++|.+.+..+..|+.+++|++|+|++|.+++..|..+.++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 45678888888888887655555788888888888888888777778888888888888888888777777888888888
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l 231 (669)
|++++|.+....+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+++. .+..+++|+.+++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 88888887754445567788888888888888777777777788888888888877754 245566777777777766
Q ss_pred ccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCC
Q 040540 232 SGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSA 311 (669)
Q Consensus 232 ~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 311 (669)
++ ++ ...+|++|++++|.+..... . ..++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..
T Consensus 199 ~~-~~-----~~~~L~~L~l~~n~l~~~~~-~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~--- 264 (390)
T 3o6n_A 199 ST-LA-----IPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM--- 264 (390)
T ss_dssp SE-EE-----CCSSCSEEECCSSCCCEEEC-C--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE---
T ss_pred cc-cC-----CCCcceEEECCCCeeeeccc-c--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC---
Confidence 52 11 23456666666666543321 1 124555555555555432 23444555555555555444321
Q ss_pred cccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCccccc
Q 040540 312 DQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGY 391 (669)
Q Consensus 312 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~ 391 (669)
...+..+++|+.|++++| .+.+ ++..+..+++|+.|++++|.+.+
T Consensus 265 -----~~~~~~l~~L~~L~L~~n----------------------------~l~~-~~~~~~~l~~L~~L~L~~n~l~~- 309 (390)
T 3o6n_A 265 -----YHPFVKMQRLERLYISNN----------------------------RLVA-LNLYGQPIPTLKVLDLSHNHLLH- 309 (390)
T ss_dssp -----SGGGTTCSSCCEEECCSS----------------------------CCCE-EECSSSCCTTCCEEECCSSCCCC-
T ss_pred -----hhHccccccCCEEECCCC----------------------------cCcc-cCcccCCCCCCCEEECCCCccee-
Confidence 012333444444444444 4432 23334456778888888887773
Q ss_pred CchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCccee
Q 040540 392 VPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSS 438 (669)
Q Consensus 392 ~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 438 (669)
+|..+..+++|+.|++++|.+... + +..+++|+.|++++|++..
T Consensus 310 ~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 310 VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred cCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 555677788888888888888754 3 5677889999999998874
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-32 Score=304.16 Aligned_cols=313 Identities=19% Similarity=0.179 Sum_probs=227.2
Q ss_pred cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 72 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
..+.+++.|++++|.+....+..|..+++|++|+|++|.+.+..|..|+.+++|++|+|++|.+++..|..|+++++|++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 35678999999999998777777888999999999999999888888999999999999999999888888888999999
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l 231 (669)
|++++|.+++..+..|+++++|++|++++|.+++..|..|+.+++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 99999988866666678888888888888888888888888888888888888888764 245567777788877777
Q ss_pred ccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCC
Q 040540 232 SGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSA 311 (669)
Q Consensus 232 ~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 311 (669)
++ ++ ...+|++|++++|.+....+.. .++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..
T Consensus 205 ~~-l~-----~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~--- 270 (597)
T 3oja_B 205 ST-LA-----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM--- 270 (597)
T ss_dssp SE-EE-----CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE---
T ss_pred cc-cc-----CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCC---
Confidence 53 11 2345677777777665432221 1355666666666554 234455555555555555544331
Q ss_pred cccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCccccc
Q 040540 312 DQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGY 391 (669)
Q Consensus 312 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~ 391 (669)
...+..+++|+.|++ ++|.+.+ +|..+..+++|+.|++++|.+. .
T Consensus 271 -----~~~~~~l~~L~~L~L----------------------------s~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~ 315 (597)
T 3oja_B 271 -----YHPFVKMQRLERLYI----------------------------SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-H 315 (597)
T ss_dssp -----SGGGTTCSSCCEEEC----------------------------TTSCCCE-EECSSSCCTTCCEEECCSSCCC-C
T ss_pred -----HHHhcCccCCCEEEC----------------------------CCCCCCC-CCcccccCCCCcEEECCCCCCC-c
Confidence 122334444444444 4444443 2344455677888888888887 4
Q ss_pred CchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcceec
Q 040540 392 VPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSSS 439 (669)
Q Consensus 392 ~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 439 (669)
+|..+..+++|+.|++++|.+.+.. +..+++|+.|++++|++.+.
T Consensus 316 i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 316 VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 6667778888999999999887542 56778999999999998753
No 41
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=3.5e-34 Score=290.19 Aligned_cols=189 Identities=17% Similarity=0.202 Sum_probs=152.1
Q ss_pred chhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCee
Q 040540 450 DSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPII 529 (669)
Q Consensus 450 ~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~ 529 (669)
.+|+.++..++|||||++++++......+||||||++|+|.+++++. ..+++.....|+.|++.||+|||. .+||
T Consensus 98 ~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~-~~l~e~~~~~~~~qi~~aL~ylH~----~~Ii 172 (336)
T 4g3f_A 98 VEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQM-GCLPEDRALYYLGQALEGLEYLHT----RRIL 172 (336)
T ss_dssp THHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHT----TTEE
T ss_pred HHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CCce
Confidence 46999999999999999999999999999999999999999999854 468999999999999999999994 5899
Q ss_pred ecCCCCcc-------------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 530 HCEGEDSV-------------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 530 h~d~~~~~-------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
|||+|+.. .....+||+.|||||++.+..|+.++|||||||++|||+||
T Consensus 173 HRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG 252 (336)
T 4g3f_A 173 HGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNG 252 (336)
T ss_dssp CSCCCGGGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred ecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHC
Confidence 99999530 00113599999999999999999999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||........ +.. +....+. .. ..+...+..+.+++.+||++||++|||+.|+++.|.+..
T Consensus 253 ~~Pf~~~~~~~~-~~~-i~~~~~~-~~--------------~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l 315 (336)
T 4g3f_A 253 CHPWTQYFRGPL-CLK-IASEPPP-IR--------------EIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKAL 315 (336)
T ss_dssp SCSSTTTCCSCC-HHH-HHHSCCG-GG--------------GSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHH-HHH-HHcCCCC-ch--------------hcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHH
Confidence 999976433322 221 2111110 00 012234566789999999999999999999999988765
Q ss_pred HH
Q 040540 659 VK 660 (669)
Q Consensus 659 ~~ 660 (669)
+.
T Consensus 316 ~~ 317 (336)
T 4g3f_A 316 QE 317 (336)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 42
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.9e-33 Score=284.41 Aligned_cols=200 Identities=17% Similarity=0.220 Sum_probs=147.0
Q ss_pred hhhhhhccccccccceecccccccc----ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC---
Q 040540 451 SECEVLRNVRHRNLIKIISSCSNPD----FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH--- 523 (669)
Q Consensus 451 ~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~--- 523 (669)
.|+..+..++|||+|+++++|..++ ..+||||||++|+|.++++.. .++|..+.+|+.|+++||+|||...
T Consensus 46 ~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~--~l~~~~~~~i~~~ia~gl~ylH~~~~~~ 123 (303)
T 3hmm_A 46 AEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGT 123 (303)
T ss_dssp HHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCST
T ss_pred HHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4666677889999999999997653 468999999999999999853 5899999999999999999999541
Q ss_pred -CCCCeeecCCCCcc-----------------------------cccccccccccCccccccCC------CcCccccchh
Q 040540 524 -SSAPIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEG------IVSAKCDVYS 567 (669)
Q Consensus 524 -~~~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~s 567 (669)
..++|+|||+|+.. .....+||+.|||||++.+. .|+.|+||||
T Consensus 124 ~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS 203 (303)
T 3hmm_A 124 QGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYA 203 (303)
T ss_dssp TCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHH
T ss_pred cCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhh
Confidence 24589999999530 01123699999999998653 4788999999
Q ss_pred hHHHHHHHHhCCCCCCcCCC----------CCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcc
Q 040540 568 YGVLLMETFTRKRPTDEMFT----------GEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCC 637 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~ 637 (669)
|||++|||+||+.|+..... .........+..... ..++.+... ....+++..+.+++.+||
T Consensus 204 ~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~~rp~~p~~----~~~~~~~~~l~~li~~cl 275 (303)
T 3hmm_A 204 MGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQ----KLRPNIPNR----WQSCEALRVMAKIMRECW 275 (303)
T ss_dssp HHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTS----CCCCCCCGG----GGSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcc----cCCCCCCcc----ccchHHHHHHHHHHHHHc
Confidence 99999999999877643211 111222222211111 112222211 123456678899999999
Q ss_pred cCCCCCCCCHHHHHHHHHHhHHH
Q 040540 638 MESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 638 ~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
+.||++||||.||+++|+++.+.
T Consensus 276 ~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 276 YANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp CSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ccCHhHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-31 Score=288.03 Aligned_cols=315 Identities=18% Similarity=0.197 Sum_probs=244.4
Q ss_pred cccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCccc
Q 040540 64 GGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSL 143 (669)
Q Consensus 64 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 143 (669)
.+..+..++++++|++|++++|.+++. | .++.+++|++|++++|++++. | ++.+++|++|++++|++++. | +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--c
Confidence 344455688999999999999999975 5 689999999999999999974 4 89999999999999999974 3 8
Q ss_pred CCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcE
Q 040540 144 FNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRI 223 (669)
Q Consensus 144 ~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~ 223 (669)
+++++|++|++++|.+++ +| ++.+++|++|++++|++++. + ++.+++|++|++++|...+.+ .+..+++|+.
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 999999999999999987 44 89999999999999999974 3 889999999999999766665 4788999999
Q ss_pred EEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCc
Q 040540 224 LTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNN 303 (669)
Q Consensus 224 L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~ 303 (669)
|++++|.+++ +| +. .+++|++|++++|++++. .+..+++|+.|++++|.+.+ +| +..+++|+.|++++|+
T Consensus 175 L~ls~n~l~~-l~--l~-~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 175 LDCSFNKITE-LD--VS-QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp EECCSSCCCC-CC--CT-TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred EECCCCccce-ec--cc-cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCc
Confidence 9999999986 66 43 689999999999999875 48889999999999999997 55 8899999999999999
Q ss_pred cccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEec
Q 040540 304 LTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYV 383 (669)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l 383 (669)
+++.+ ...+++|+.|+++.|.+ +.+++++|.+.+.+| ++.+++|+.+++
T Consensus 245 l~~~~-----------~~~l~~L~~L~l~~n~L------------------~~L~l~~n~~~~~~~--~~~l~~L~~L~L 293 (457)
T 3bz5_A 245 LTELD-----------VSTLSKLTTLHCIQTDL------------------LEIDLTHNTQLIYFQ--AEGCRKIKELDV 293 (457)
T ss_dssp CSCCC-----------CTTCTTCCEEECTTCCC------------------SCCCCTTCTTCCEEE--CTTCTTCCCCCC
T ss_pred CCCcC-----------HHHCCCCCEEeccCCCC------------------CEEECCCCccCCccc--ccccccCCEEEC
Confidence 98753 23345555555554432 223334444333333 233444444444
Q ss_pred CCCcccccCchh--------hcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCccee
Q 040540 384 PENNLQGYVPHD--------LCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLSS 438 (669)
Q Consensus 384 ~~n~~~~~~p~~--------~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 438 (669)
++|...+.+|.. +...++|+.|++++|++++. + ++.+++|+.|++++|++++
T Consensus 294 s~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 294 THNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred CCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 444443333321 23345677888888888763 2 6777888888888888775
No 44
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=2.4e-34 Score=295.22 Aligned_cols=192 Identities=24% Similarity=0.390 Sum_probs=153.2
Q ss_pred ccCchhhhhhccccc-cccceeccccccc-cccceeeccCCCCChHHhhhcC---------------CCccCHHHHHHHH
Q 040540 447 RSFDSECEVLRNVRH-RNLIKIISSCSNP-DFKALVLEFMPNGSLEKWLYSH---------------NYFLDILERLNIM 509 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h-~niv~l~~~~~~~-~~~~lv~ey~~~g~L~~~l~~~---------------~~~l~~~~~~~i~ 509 (669)
+.|..|+.++.+++| ||||+++|+|..+ ...++|||||++|+|.++|+.. ...++|.++..|+
T Consensus 112 ~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 191 (353)
T 4ase_A 112 RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS 191 (353)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHH
Confidence 467789999999965 8999999999764 5678999999999999999753 2358999999999
Q ss_pred HhHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCcc
Q 040540 510 IDVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAK 562 (669)
Q Consensus 510 ~~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~ 562 (669)
.|||+||+|||. .+|||||+|+.. ...+..||+.|||||++.+..|+.|
T Consensus 192 ~qia~gl~yLH~----~~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~k 267 (353)
T 4ase_A 192 FQVAKGMEFLAS----RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQ 267 (353)
T ss_dssp HHHHHHHHHHHH----TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHH
T ss_pred HHHHHHHHhHhh----CCeecCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCc
Confidence 999999999995 479999999430 1122358999999999999999999
Q ss_pred ccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCC
Q 040540 563 CDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESP 641 (669)
Q Consensus 563 ~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P 641 (669)
+|||||||++|||+| |+.||...... ..+...+....... .+..++.++.+++.+||+.||
T Consensus 268 sDVwS~Gv~l~El~t~G~~Pf~~~~~~-~~~~~~i~~g~~~~-----------------~p~~~~~~~~~li~~c~~~dP 329 (353)
T 4ase_A 268 SDVWSFGVLLWEIFSLGASPYPGVKID-EEFCRRLKEGTRMR-----------------APDYTTPEMYQTMLDCWHGEP 329 (353)
T ss_dssp HHHHHHHHHHHHHTTTSCCSSTTCCCS-HHHHHHHHHTCCCC-----------------CCTTCCHHHHHHHHHHTCSSG
T ss_pred ccEeehHHHHHHHHhCCCCCCCCCCHH-HHHHHHHHcCCCCC-----------------CCccCCHHHHHHHHHHcCcCh
Confidence 999999999999998 89999764322 22333333322111 122334567899999999999
Q ss_pred CCCCCHHHHHHHHHHhHHH
Q 040540 642 DKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 642 ~~Rps~~~v~~~l~~~~~~ 660 (669)
++||||.||++.|+++.+.
T Consensus 330 ~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 330 SQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp GGSCCHHHHHHHHHHHHHH
T ss_pred hHCcCHHHHHHHHHHHHHH
Confidence 9999999999999988654
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-31 Score=283.21 Aligned_cols=309 Identities=17% Similarity=0.186 Sum_probs=252.9
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
..++.|+++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|+|++|.+.+..|..|+++++|++|+|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 56889999999987655555889999999999999999888889999999999999999999888899999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|.++...+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+++. .++.+++|+.|++++|.+++.
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc
Confidence 99999965555578999999999999999998899999999999999999999865 256789999999999998753
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
....+|+.|++++|.+. .+|.. ..++|++|++++|++.+. ..+..+++|+.|++++|.+.+..|..|..
T Consensus 202 -----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 202 -----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp -----ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred -----CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 34568999999999997 45543 357899999999999864 57899999999999999999988999999
Q ss_pred CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCc
Q 040540 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPT 370 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~ 370 (669)
+++|+.|++++|++++.+. ....+++|+.|++++|.+.+. |.
T Consensus 271 l~~L~~L~L~~n~l~~~~~---------~~~~l~~L~~L~L~~n~l~~~-~~---------------------------- 312 (390)
T 3o6n_A 271 MQRLERLYISNNRLVALNL---------YGQPIPTLKVLDLSHNHLLHV-ER---------------------------- 312 (390)
T ss_dssp CSSCCEEECCSSCCCEEEC---------SSSCCTTCCEEECCSSCCCCC-GG----------------------------
T ss_pred cccCCEEECCCCcCcccCc---------ccCCCCCCCEEECCCCcceec-Cc----------------------------
Confidence 9999999999999876532 234577888888888877643 22
Q ss_pred cccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccce
Q 040540 371 SIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSG 414 (669)
Q Consensus 371 ~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~ 414 (669)
.+..+++|+.|++++|.+.... +..+++|+.|++++|.+..
T Consensus 313 ~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp GHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred cccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence 2233344555555555554331 3445666667777766654
No 46
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=6e-34 Score=283.68 Aligned_cols=185 Identities=22% Similarity=0.364 Sum_probs=142.6
Q ss_pred ccCchhhhhhccccccccceecccccc----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+.|.+|+.+++.++|||||++++++.. ....+||||||++|+|.+++++. ..+++.....|+.|+++||+|||..
T Consensus 70 ~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~ylH~~ 148 (290)
T 3fpq_A 70 QRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF-KVMKIKVLRSWCRQILKGLQFLHTR 148 (290)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 457789999999999999999998754 35578999999999999999853 5689999999999999999999954
Q ss_pred CCCCCeeecCCCCc------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 523 HSSAPIIHCEGEDS------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 523 ~~~~~i~h~d~~~~------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.++|+|||+|+. ....+.+||+.|||||++.+ +|+.++|||||||++|||+||
T Consensus 149 --~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg 225 (290)
T 3fpq_A 149 --TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATS 225 (290)
T ss_dssp --SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHS
T ss_pred --CCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCCccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHC
Confidence 345999999953 11223469999999998865 699999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||..... ...+...+...... .. .+...++++.+++.+||+.||++|||++|+++
T Consensus 226 ~~Pf~~~~~-~~~~~~~i~~~~~~---~~-------------~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 226 EYPYSECQN-AAQIYRRVTSGVKP---AS-------------FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp SCTTTTCSS-HHHHHHHHTTTCCC---GG-------------GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCCCCCCc-HHHHHHHHHcCCCC---CC-------------CCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 999965321 11122212111110 00 01122345789999999999999999999875
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-31 Score=298.99 Aligned_cols=287 Identities=16% Similarity=0.158 Sum_probs=242.5
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
..++.++++++.+....+..|..+++|++|+|++|.+.+..|..|+.+++|++|+|++|.+.+..|..|+++++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 45788999999998766666899999999999999999988889999999999999999999988889999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|.+++..+..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++.. ++.+++|+.|++++|.+++.
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc
Confidence 999999766666899999999999999999999999999999999999999998653 56788999999999998753
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
....+|+.|++++|.+. .+|..+ .++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..|..
T Consensus 208 -----~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 208 -----AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp -----ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred -----cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 45568999999999997 455433 3689999999999986 477899999999999999999999999999
Q ss_pred CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccC
Q 040540 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLN 365 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~ 365 (669)
+++|+.|++++|.+++.+ .....+++|+.|++++|.+.. +|..+. .+++|..|++++|.+.
T Consensus 277 l~~L~~L~Ls~N~l~~l~---------~~~~~l~~L~~L~Ls~N~l~~-i~~~~~----~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 277 MQRLERLYISNNRLVALN---------LYGQPIPTLKVLDLSHNHLLH-VERNQP----QFDRLENLYLDHNSIV 337 (597)
T ss_dssp CSSCCEEECTTSCCCEEE---------CSSSCCTTCCEEECCSSCCCC-CGGGHH----HHTTCSEEECCSSCCC
T ss_pred ccCCCEEECCCCCCCCCC---------cccccCCCCcEEECCCCCCCc-cCcccc----cCCCCCEEECCCCCCC
Confidence 999999999999987753 223457788888888888774 332222 1344555555555544
No 48
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=2.1e-33 Score=285.35 Aligned_cols=183 Identities=19% Similarity=0.267 Sum_probs=148.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.+++.++|||||++++++...+..|||||||++|+|.+++.+ ..+++.+...|+.|++.||+|||. .
T Consensus 116 ~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~--~~l~e~~~~~~~~qi~~aL~ylH~----~ 189 (346)
T 4fih_A 116 ELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIAAVCLAVLQALSVLHA----Q 189 (346)
T ss_dssp GGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTTEEHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 4567899999999999999999999999999999999999999999975 358999999999999999999995 4
Q ss_pred CeeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|||||+|+. ....+.+||+.|||||++.+..|+.++||||+||++|||+||+.|
T Consensus 190 ~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~P 269 (346)
T 4fih_A 190 GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPP 269 (346)
T ss_dssp TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CcccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 7999999953 112345799999999999998999999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|... ....+...+....+... +.+...+.++.+++.+||+.||++|||+.|+++
T Consensus 270 F~~~--~~~~~~~~i~~~~~~~~---------------~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 270 YFNE--PPLKAMKMIRDNLPPRL---------------KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp TTTS--CHHHHHHHHHHSSCCCC---------------SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCc--CHHHHHHHHHcCCCCCC---------------CccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 9752 22222222332222111 112234456789999999999999999999875
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=9.7e-33 Score=281.92 Aligned_cols=249 Identities=30% Similarity=0.463 Sum_probs=224.0
Q ss_pred CCCCEEeCCCCcCcc--cCCcccCCCCCCCEEEccC-CcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 75 SFLVSLDISENNFHG--HLPKELGQLRRLRVMSLAY-NKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 75 ~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
.+++.|+|++|.+.+ .+|..|+++++|++|++++ |.+.+.+|..|+++++|++|+|++|++++.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 478999999999999 8999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCC-CCCEEEccCCCCCCCCCccccCCCCCcEEEcccCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQ-NLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQ 230 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 230 (669)
|++++|.+.+.+|..+.++++|++|++++|.+++.+|..++.++ +|++|++++|.+++.+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999999999999999999999999999999999999998 999999999999999999999987 9999999999
Q ss_pred CccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCC
Q 040540 231 LSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSS 310 (669)
Q Consensus 231 l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~ 310 (669)
+++.+|..+. .+++|++|++++|++.+.+|. +..+++|+.|++++|.+.+.+|..|..+++|+.|++++|++++..
T Consensus 209 l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i-- 284 (313)
T 1ogq_A 209 LEGDASVLFG-SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-- 284 (313)
T ss_dssp EEECCGGGCC-TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC--
T ss_pred ccCcCCHHHh-cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC--
Confidence 9887777665 689999999999999877665 778899999999999999889998999999999999988887542
Q ss_pred CcccccccccCCCCCCCEEECcCCC
Q 040540 311 ADQWSFLSSLTNCRNLSNLALASNP 335 (669)
Q Consensus 311 ~~~~~~~~~l~~l~~L~~L~l~~n~ 335 (669)
+....+++|+.+++++|+
T Consensus 285 -------p~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 285 -------PQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp -------CCSTTGGGSCGGGTCSSS
T ss_pred -------CCCccccccChHHhcCCC
Confidence 122456667777777776
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=7.2e-31 Score=272.85 Aligned_cols=302 Identities=24% Similarity=0.385 Sum_probs=163.0
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
+++.|+++++.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.. + +.+.++++|++|+++
T Consensus 45 ~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 45 SITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLN 118 (347)
T ss_dssp TCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECT
T ss_pred cccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECc
Confidence 455555555555422 2 24555555555555555543222 5555555555555555542 2 235555555555555
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCC
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLI 211 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 211 (669)
+|.+++. |. + ..+++|++|++++|.....++. +..+++|++|++++|.+.+..
T Consensus 119 ~n~i~~~-~~-~------------------------~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 119 EDNISDI-SP-L------------------------ANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVT 171 (347)
T ss_dssp TSCCCCC-GG-G------------------------TTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCcccCc-hh-h------------------------ccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCch
Confidence 5555432 11 4 4444444444444433322222 445555555555555554332
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCC
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNL 291 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 291 (669)
+ +..+++|+.|++++|.+.+ ++. + ..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+
T Consensus 172 ~--~~~l~~L~~L~l~~n~l~~-~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l 242 (347)
T 4fmz_A 172 P--IANLTDLYSLSLNYNQIED-ISP-L-ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANL 242 (347)
T ss_dssp G--GGGCTTCSEEECTTSCCCC-CGG-G-GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred h--hccCCCCCEEEccCCcccc-ccc-c-cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcC
Confidence 2 4445555555555555442 222 2 235555555555555544332 4555566666666666554322 5566
Q ss_pred CCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCcc
Q 040540 292 RHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTS 371 (669)
Q Consensus 292 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~ 371 (669)
++|+.|++++|.++.. ..+..+++|+.|++++|.+.+. ..
T Consensus 243 ~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~l~~n~l~~~------------------------------~~ 282 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI----------NAVKDLTKLKMLNVGSNQISDI------------------------------SV 282 (347)
T ss_dssp TTCCEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCCC------------------------------GG
T ss_pred CCCCEEECCCCccCCC----------hhHhcCCCcCEEEccCCccCCC------------------------------hh
Confidence 6666666666655442 2234455666666666554432 12
Q ss_pred ccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCcce
Q 040540 372 IGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNKLS 437 (669)
Q Consensus 372 ~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~l~ 437 (669)
+..+++|+.+++++|.+.+..|..+..+++|+.|++++|.+++..| +..+++|+.|++++|+++
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 3455667777777777777777777778888888888888776555 677888888888888764
No 51
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=99.97 E-value=3.3e-33 Score=284.34 Aligned_cols=182 Identities=18% Similarity=0.253 Sum_probs=147.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+.+|+.+++.++|||||++++++..++..|||||||++|+|.++|... +..+++.+...|+.|++.||+|||.
T Consensus 68 ~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~---- 143 (350)
T 4b9d_A 68 EESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHD---- 143 (350)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 45778999999999999999999999999999999999999999999754 3457888999999999999999995
Q ss_pred CCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 526 APIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 526 ~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
.+|+|||+|+.. ...+.+||+.|||||++.+..|+.++||||+||++|||+||+.
T Consensus 144 ~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~ 223 (350)
T 4b9d_A 144 RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKH 223 (350)
T ss_dssp TTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCeeeccCCHHHEEECCCCCEEEcccccceeecCCcccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence 489999999541 0123369999999999999999999999999999999999999
Q ss_pred CCCcCCCCCccHHHHH-HHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWV-KESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||.... ...+...+ ....+. .+...+.++.+++.+||+.||++|||+.|+++
T Consensus 224 PF~~~~--~~~~~~~i~~~~~~~------------------~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 224 AFEAGS--MKNLVLKIISGSFPP------------------VSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp SCCCSS--HHHHHHHHHHTCCCC------------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCcC--HHHHHHHHHcCCCCC------------------CCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 997532 11121111 111111 01123456789999999999999999999975
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.8e-30 Score=267.34 Aligned_cols=282 Identities=26% Similarity=0.397 Sum_probs=179.8
Q ss_pred CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccc
Q 040540 50 HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 50 ~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 129 (669)
..+++.|++++|.+.+..+ +..+++|++|++++|.+.+ + +.+..+++|++|++++|.+.+. |. +..+++|++|+
T Consensus 65 ~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEE
T ss_pred cCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEE
Confidence 3579999999999986544 8999999999999999985 3 4699999999999999999854 43 89999999999
Q ss_pred ccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 130 LDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 130 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
+++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 139 l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 139 LGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp CTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC
Confidence 99997654433 37777777777777776654333 5566666666666666653322 5556666666666666554
Q ss_pred CCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccC
Q 040540 210 LIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFG 289 (669)
Q Consensus 210 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~ 289 (669)
..+ +..+++|++|++++|.++ +..+ +..+++|+.|++++|.+.+. ..+.
T Consensus 214 ~~~--~~~~~~L~~L~l~~n~l~-------------------------~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~ 262 (347)
T 4fmz_A 214 ITP--VANMTRLNSLKIGNNKIT-------------------------DLSP--LANLSQLTWLEIGTNQISDI--NAVK 262 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCC-------------------------CCGG--GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred Cch--hhcCCcCCEEEccCCccC-------------------------CCcc--hhcCCCCCEEECCCCccCCC--hhHh
Confidence 322 444455555555555443 3222 44555555555555555432 2455
Q ss_pred CCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCC
Q 040540 290 NLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIP 369 (669)
Q Consensus 290 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~ 369 (669)
.+++|+.|++++|++++. +.+..+++|+.|++++|.+.+..+..+
T Consensus 263 ~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~L~~n~l~~~~~~~l------------------------- 307 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDI----------SVLNNLSQLNSLFLNNNQLGNEDMEVI------------------------- 307 (347)
T ss_dssp TCTTCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCCCGGGHHHH-------------------------
T ss_pred cCCCcCEEEccCCccCCC----------hhhcCCCCCCEEECcCCcCCCcChhHh-------------------------
Confidence 666666777766665543 224456677777777776655443332
Q ss_pred ccccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccc
Q 040540 370 TSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLS 413 (669)
Q Consensus 370 ~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~ 413 (669)
..+++|+.+++++|.+++..| +..+++|+.|++++|.++
T Consensus 308 ---~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 308 ---GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ---HTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ---hccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 233445555555555554444 445556666666666553
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=3e-30 Score=276.71 Aligned_cols=330 Identities=24% Similarity=0.332 Sum_probs=248.2
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
+++.|++++|++++. |. -.++|++|++++|.+++ +|.. +++|++|++++|++.+ +|.. .++|++|+++
T Consensus 72 ~l~~L~l~~~~l~~l-p~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~ 139 (454)
T 1jl5_A 72 QAHELELNNLGLSSL-PE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVS 139 (454)
T ss_dssp TCSEEECTTSCCSCC-CS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECC
T ss_pred CCCEEEecCCccccC-CC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECc
Confidence 468999999999863 33 13789999999999987 6653 4789999999999985 3432 2689999999
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCC
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLI 211 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 211 (669)
+|++++ +| .++++++|++|++++|.+.+ +|..+ .+|++|++++|.+++ +| .++.+++|++|++++|.+++ +
T Consensus 140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l 210 (454)
T 1jl5_A 140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-L 210 (454)
T ss_dssp SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-C
T ss_pred CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-C
Confidence 999996 77 69999999999999999986 66543 589999999999986 56 58999999999999999987 4
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCC
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNL 291 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 291 (669)
|.. .++|++|++++|.++ .+|. +. .+++|++|++++|++.+ +|.. .++|+.|++++|.+.+ +|.. .
T Consensus 211 ~~~---~~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~ 276 (454)
T 1jl5_A 211 PDL---PLSLESIVAGNNILE-ELPE-LQ-NLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---P 276 (454)
T ss_dssp CCC---CTTCCEEECCSSCCS-SCCC-CT-TCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---C
T ss_pred CCC---cCcccEEECcCCcCC-cccc-cC-CCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---c
Confidence 443 258999999999998 7884 44 68999999999999876 4443 4789999999999986 5543 4
Q ss_pred CCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCcc
Q 040540 292 RHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTS 371 (669)
Q Consensus 292 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~ 371 (669)
++|+.|++++|++++.+.. .++|+.|++++|.+.+.. . ...+|+.+++++|.+.+ +|..
T Consensus 277 ~~L~~L~ls~N~l~~l~~~------------~~~L~~L~l~~N~l~~i~-~-------~~~~L~~L~Ls~N~l~~-lp~~ 335 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLSEL------------PPNLYYLNASSNEIRSLC-D-------LPPSLEELNVSNNKLIE-LPAL 335 (454)
T ss_dssp TTCCEEECCSSCCSEESCC------------CTTCCEEECCSSCCSEEC-C-------CCTTCCEEECCSSCCSC-CCCC
T ss_pred CcCCEEECcCCccCcccCc------------CCcCCEEECcCCcCCccc-C-------CcCcCCEEECCCCcccc-cccc
Confidence 7899999999998775321 157899999999988632 1 12478899999999986 4543
Q ss_pred ccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccce--eCcccccCC-------------CCCCEEECCCCcc
Q 040540 372 IGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSG--HIPPCLASL-------------TSLRELHLGSNKL 436 (669)
Q Consensus 372 ~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~--~~p~~l~~l-------------~~L~~L~l~~N~l 436 (669)
+++|+.+++++|.+++ +|. .+.+|+.|++++|++.+ .+|..++.+ ++|+.|++++|++
T Consensus 336 ---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 336 ---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp ---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred ---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 4789999999999885 555 47899999999999998 778888777 8899999999999
Q ss_pred ee--cCCccc
Q 040540 437 SS--SIPSSL 444 (669)
Q Consensus 437 ~~--~~p~~~ 444 (669)
.+ .+|.++
T Consensus 409 ~~~~~iP~sl 418 (454)
T 1jl5_A 409 REFPDIPESV 418 (454)
T ss_dssp ----------
T ss_pred CccccchhhH
Confidence 97 777654
No 54
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=99.97 E-value=1.4e-32 Score=286.31 Aligned_cols=183 Identities=19% Similarity=0.270 Sum_probs=148.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.+++.++|||||++++++...+..|||||||++|+|.++++.. .+++.+...|+.|++.||+|||. .
T Consensus 193 ~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~L~~~i~~~--~l~e~~~~~~~~qil~aL~ylH~----~ 266 (423)
T 4fie_A 193 ELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVLHA----Q 266 (423)
T ss_dssp GGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCCCCcHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 35678999999999999999999999999999999999999999999753 48999999999999999999995 4
Q ss_pred CeeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|||||+|+. ....+.+||+.|||||++.+..|+.++||||+||++|||++|+.|
T Consensus 267 ~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~P 346 (423)
T 4fie_A 267 GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPP 346 (423)
T ss_dssp TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CeecccCCHHHEEEcCCCCEEEecCccceECCCCCccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 8999999953 112345799999999999999999999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|.+. ....+...+....+... ..+...+..+.+++.+||+.||++|||+.|+++
T Consensus 347 F~~~--~~~~~~~~i~~~~~~~~---------------~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 347 YFNE--PPLKAMKMIRDNLPPRL---------------KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp TTTS--CHHHHHHHHHHSCCCCC---------------SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCc--CHHHHHHHHHcCCCCCC---------------cccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 9752 22222233332222111 012233456789999999999999999999876
No 55
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=99.97 E-value=2.8e-32 Score=272.98 Aligned_cols=175 Identities=19% Similarity=0.179 Sum_probs=137.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||||++++++..++..++|||||++|+|.+++++. ..+++.+...|+.|++.||+|||. .+
T Consensus 72 ~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~-~~l~e~~~~~~~~qi~~aL~ylH~----~~ 146 (304)
T 3ubd_A 72 RTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKE-VMFTEEDVKFYLAELALALDHLHS----LG 146 (304)
T ss_dssp ------CCCCCCCCTTEECEEEEEEETTEEEEEECCCTTCEEHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEEcCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4667999999999999999999999999999999999999999999864 468999999999999999999995 47
Q ss_pred eeecCCCCc-------------------------ccccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDS-------------------------VTQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~-------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+. ....+.+||+.|||||++.+..|+.++||||+||++|||+||+.||
T Consensus 147 IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF 226 (304)
T 3ubd_A 147 IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPF 226 (304)
T ss_dssp CCCSSCCGGGEEECTTSCEEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred CcCCCCCHHHeEEcCCCCEEecccccceeccCCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCC
Confidence 999999954 1123346999999999999999999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
.... ...+...+...... .+...+.++.+++.+||+.||++|||+
T Consensus 227 ~~~~--~~~~~~~i~~~~~~------------------~p~~~s~~~~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 227 QGKD--RKETMTMILKAKLG------------------MPQFLSPEAQSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp CCSS--HHHHHHHHHHCCCC------------------CCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred CCcC--HHHHHHHHHcCCCC------------------CCCcCCHHHHHHHHHHcccCHHHCCCC
Confidence 7532 11222222111110 011234567899999999999999985
No 56
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=99.97 E-value=2.3e-32 Score=273.39 Aligned_cols=180 Identities=18% Similarity=0.181 Sum_probs=145.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.+++.++|||||++++++...+..++|||||++|+|.+++++. ..+++.+...|+.|++.||+|||. .
T Consensus 77 ~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivmEy~~gG~L~~~i~~~-~~l~e~~~~~~~~qi~~al~ylH~----~ 151 (311)
T 4aw0_A 77 PYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI-GSFDETCTRFYTAEIVSALEYLHG----K 151 (311)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 35678999999999999999999999999999999999999999999854 458999999999999999999995 4
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+|+|||+|+.. ...+.+||+.|||||++.+..|+.++||||+||++|||+||+
T Consensus 152 ~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~ 231 (311)
T 4aw0_A 152 GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGL 231 (311)
T ss_dssp TEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSS
T ss_pred CCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 89999999530 122347999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAA 651 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~ 651 (669)
.||.... ...+..-+..... .+ +...+.++.+++.+|++.||++|||++|+.
T Consensus 232 ~PF~~~~--~~~~~~~i~~~~~-~~-----------------p~~~s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 232 PPFRAGN--EGLIFAKIIKLEY-DF-----------------PEKFFPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp CSSCCSS--HHHHHHHHHHTCC-CC-----------------CTTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred CCCCCCC--HHHHHHHHHcCCC-CC-----------------CcccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence 9997532 1122222211110 00 112234678999999999999999999874
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.9e-29 Score=260.07 Aligned_cols=244 Identities=23% Similarity=0.328 Sum_probs=163.7
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
+++.++++++++. .+|..+. +.|++|++++|.+++..+..|.++++|++|++++|++.+..|..|+++++|++|+|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4567888888886 4555443 688999999999988777789999999999999999988778889999999999999
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcc--cCCccccCCCCCCEEEccCCCCCC
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQG--QIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
+|+++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99987 4565544 677777777777776666667777777777777777643 556666677777777777777664
Q ss_pred CCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccC
Q 040540 210 LIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFG 289 (669)
Q Consensus 210 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~ 289 (669)
+|..+. ++|++|++++|.+++..|..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+.
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 333332 4556666666655543333333 4555555555555555544445555555555555555554 3444444
Q ss_pred CCCCCCEEEccCCcccc
Q 040540 290 NLRHLSVLNVMMNNLTT 306 (669)
Q Consensus 290 ~l~~L~~L~l~~N~l~~ 306 (669)
.+++|+.|++++|+++.
T Consensus 261 ~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TCSSCCEEECCSSCCCC
T ss_pred cCCCcCEEECCCCcCCc
Confidence 45555555555554443
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=9.5e-30 Score=262.48 Aligned_cols=219 Identities=25% Similarity=0.318 Sum_probs=139.0
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
+++.++++++++. .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|++.+..|..|+++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4567888888876 5555543 578888888888887777778888888888888888887777888888888888888
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCc--ccCCccccCCCCCCEEEccCCCCCC
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQ--GQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~--~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
+|+++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+. +..|..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 88877 4555444 56777777777666555555666666666666666664 2445555555 56666666666554
Q ss_pred CCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccC
Q 040540 210 LIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFG 289 (669)
Q Consensus 210 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~ 289 (669)
+|..+. ++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+..|.
T Consensus 187 -l~~~~~---------------------------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 187 -IPKDLP---------------------------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp -CCSSSC---------------------------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred -cCcccc---------------------------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 233222 3444555555555444444455555555555555555544444455
Q ss_pred CCCCCCEEEccCCccc
Q 040540 290 NLRHLSVLNVMMNNLT 305 (669)
Q Consensus 290 ~l~~L~~L~l~~N~l~ 305 (669)
.+++|+.|++++|+++
T Consensus 239 ~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS 254 (332)
T ss_dssp GCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCcCe
Confidence 5555555555555444
No 59
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=99.97 E-value=7.7e-32 Score=266.00 Aligned_cols=179 Identities=21% Similarity=0.259 Sum_probs=139.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+.+|+.+++.++|||||++++++...+..++||||| +|+|.+++.+. ..+++.+...++.|++.|++|||. .+
T Consensus 59 ~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~-~g~L~~~l~~~-~~l~e~~~~~~~~qi~~al~ylH~----~~ 132 (275)
T 3hyh_A 59 RIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYA-GNELFDYIVQR-DKMSEQEARRFFQQIISAVEYCHR----HK 132 (275)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC-CEEHHHHHHHS-CSCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEeCC-CCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4678999999999999999999999999999999999 58999999864 468999999999999999999995 48
Q ss_pred eeecCCCCc------------------------ccccccccccccCccccccCCCc-CccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDS------------------------VTQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~------------------------~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+. ....+.+||+.|||||++.+..| +.++||||+||++|||+||+.||
T Consensus 133 IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF 212 (275)
T 3hyh_A 133 IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPF 212 (275)
T ss_dssp CCCCCCCTTTEEECTTCCEEECCSSCC---------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred cccccCChHHeEECCCCCEEEeecCCCeecCCCCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCC
Confidence 999999954 11233469999999999988775 68999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.... ...+.+.+...... + +...+..+.+++.+|++.||++|||++|+++
T Consensus 213 ~~~~--~~~~~~~i~~~~~~-~-----------------p~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 213 DDES--IPVLFKNISNGVYT-L-----------------PKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp CCSS--HHHHHHHHHHTCCC-C-----------------CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred CCCC--HHHHHHHHHcCCCC-C-----------------CCCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 7521 11122222221111 0 1122345789999999999999999999976
No 60
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.7e-29 Score=260.41 Aligned_cols=283 Identities=19% Similarity=0.241 Sum_probs=232.6
Q ss_pred CCCccceeeCCC---------CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccC
Q 040540 38 ICSWAGISCGSR---------HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAY 108 (669)
Q Consensus 38 ~c~~~g~~c~~~---------~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 108 (669)
.|.|..+.|... ...++.|++++|++++..+..|.++++|++|++++|.+++..|..|..+++|++|++++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 456777777532 24689999999999988887899999999999999999988899999999999999999
Q ss_pred CcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccc--cCCcccCCCCCCCEEEcccCCCccc
Q 040540 109 NKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGG--TIPSRIGNLRKLVNLGLWSCNLQGQ 186 (669)
Q Consensus 109 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~L~~L~~L~l~~n~l~~~ 186 (669)
|++. .+|..+. ++|++|++++|.+++..+..+.++++|+.|++++|.+.. ..+..+.++++|++|++++|.++.
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 9998 5676554 799999999999998888889999999999999999864 778899999999999999999984
Q ss_pred CCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccC
Q 040540 187 IPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITN 266 (669)
Q Consensus 187 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 266 (669)
+|..+. ++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+. .+++|++|++++|++. .+|..+..
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCcCc-cCChhhcc
Confidence 565443 7999999999999998899999999999999999999865555555 6899999999999997 77888999
Q ss_pred CCCCCEEeCCCCCccccCccccCCC------CCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCC
Q 040540 267 ATKLIGLDLGFNSFSGHIPNTFGNL------RHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASN 334 (669)
Q Consensus 267 l~~L~~L~ls~n~l~~~~p~~~~~l------~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 334 (669)
+++|+.|++++|.+++..+..|... ..++.|++.+|.+...... ...+..+.+++.+++++|
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~------~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ------PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC------GGGGTTCCCGGGEEC---
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccC------ccccccccceeEEEeccc
Confidence 9999999999999997766666433 5566666666665432111 123444555555555554
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.9e-29 Score=260.19 Aligned_cols=282 Identities=20% Similarity=0.265 Sum_probs=225.1
Q ss_pred CCCccceeeCCC---------CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccC
Q 040540 38 ICSWAGISCGSR---------HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAY 108 (669)
Q Consensus 38 ~c~~~g~~c~~~---------~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 108 (669)
.|.|..+.|... ...++.|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 367887777532 24789999999999988888999999999999999999998899999999999999999
Q ss_pred CcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeeccccccc--ccCCcccCCCCCCCEEEcccCCCccc
Q 040540 109 NKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIG--GTIPSRIGNLRKLVNLGLWSCNLQGQ 186 (669)
Q Consensus 109 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~--~~~p~~~~~L~~L~~L~l~~n~l~~~ 186 (669)
|++. .+|..+. ++|++|++++|.+++..+..+.++++|+.|++++|.+. +..|..+..+ +|++|++++|.+++
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 9998 5666555 89999999999999777778999999999999999996 4778888888 99999999999985
Q ss_pred CCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccC
Q 040540 187 IPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITN 266 (669)
Q Consensus 187 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 266 (669)
+|..+. ++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+. .+++|++|++++|++. .+|..+..
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCcCe-ecChhhhc
Confidence 565544 7899999999999998888899999999999999998865554554 6888999999988887 67777888
Q ss_pred CCCCCEEeCCCCCccccCccccCCC------CCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCC
Q 040540 267 ATKLIGLDLGFNSFSGHIPNTFGNL------RHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASN 334 (669)
Q Consensus 267 l~~L~~L~ls~n~l~~~~p~~~~~l------~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 334 (669)
+++|+.|++++|.+.+..+..|... .+|+.|++.+|.+......+ ..+..+++|+.+++++|
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~------~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP------ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG------GGGTTBCCSTTEEC---
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc------ccccccchhhhhhcccc
Confidence 8888888888888886665555442 44566666666554211111 22444555555555554
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.8e-29 Score=262.76 Aligned_cols=287 Identities=20% Similarity=0.201 Sum_probs=227.5
Q ss_pred CCCCCCCCCccceeeCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcC
Q 040540 32 WSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKL 111 (669)
Q Consensus 32 w~~~~~~c~~~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 111 (669)
|......|.|.++ | +.++++++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++
T Consensus 23 ~~~~~~~C~~~~~-c----------~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 23 SNQASLSCDRNGI-C----------KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp ----CCEECTTSE-E----------ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCccCCCCCCCeE-e----------eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc
Confidence 4444566777765 4 55666665 4555444 4889999999999877777889999999999999999
Q ss_pred CccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCC-cccCCCCCCCEEEcccCC-CcccCCc
Q 040540 112 SGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIP-SRIGNLRKLVNLGLWSCN-LQGQIPT 189 (669)
Q Consensus 112 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~L~~L~~L~l~~n~-l~~~~p~ 189 (669)
.+..|..|+++++|++|+|++|++++..+..+.++++|++|++++|.+.+..+ ..+.++++|++|++++|+ +.+..|.
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence 88778889999999999999999986555558889999999999998885444 478899999999999984 7766678
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCcccc---C
Q 040540 190 EIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSIT---N 266 (669)
Q Consensus 190 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~---~ 266 (669)
.|+.+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+...+++|++|++++|++.+..+..+. .
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccc
Confidence 8899999999999999999888999999999999999999985 67776665688999999999998876555443 3
Q ss_pred CCCCCEEeCCCCCccc----cCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccc
Q 040540 267 ATKLIGLDLGFNSFSG----HIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILP 341 (669)
Q Consensus 267 l~~L~~L~ls~n~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 341 (669)
...++.++++++.+.+ .+|..+..+++|+.|++++|+++..+. ..+..+++|+.|++++|++.+..|
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~--------~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD--------GIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH--------HHHhcCCCCCEEEeeCCCccCcCC
Confidence 5667888888888775 367778889999999999999886532 124678899999999999887654
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=6.5e-29 Score=255.09 Aligned_cols=285 Identities=18% Similarity=0.188 Sum_probs=221.6
Q ss_pred hcCCCcccccCCCCC--CCCCCCccceeeCCCCCCEEEEEcCCCCCccc----cccc--ccCCCCCCEEeCCCCcCcccC
Q 040540 20 HAFDYRSALANNWSI--SYPICSWAGISCGSRHQRVTALNLSDMGLGGT----IPLH--FGNLSFLVSLDISENNFHGHL 91 (669)
Q Consensus 20 ~~~~~~~~l~~~w~~--~~~~c~~~g~~c~~~~~~v~~L~ls~~~l~~~----~~~~--~~~l~~L~~L~Ls~N~l~~~~ 91 (669)
.+.++..+|.. |.. ..++|.|.+.-|...... -..+...|. .+.. -....++++|+|++|.+. .+
T Consensus 24 ~~~~~~~aLl~-~k~~~~~~~~~~~~~w~~~~~~~-----~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l 96 (328)
T 4fcg_A 24 ALRPYHDVLSQ-WQRHYNADRNRWHSAWRQANSNN-----PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF 96 (328)
T ss_dssp CCCCHHHHHHH-HHHHHHHCCTTHHHHHHHHTTTC-----TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC
T ss_pred cCchHHHHHHH-HHHhccCCchhhhhhhccccccc-----ccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hc
Confidence 33455556665 764 247888876655211110 001111111 1111 124578899999999988 67
Q ss_pred CcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCC
Q 040540 92 PKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLR 171 (669)
Q Consensus 92 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~ 171 (669)
|..++++++|++|+|++|.+. .+|..++++++|++|+|++|.++ .+|..++++++|++|++++|++.+.+|..++..
T Consensus 97 p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~- 173 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST- 173 (328)
T ss_dssp CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE-
T ss_pred ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc-
Confidence 878888999999999999988 78888899999999999999888 678788888888888888877777777655431
Q ss_pred CCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeec
Q 040540 172 KLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLAL 251 (669)
Q Consensus 172 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l 251 (669)
..+..+..+++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+. .+++|++|++
T Consensus 174 --------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~-~l~~L~~L~L 236 (328)
T 4fcg_A 174 --------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEELDL 236 (328)
T ss_dssp --------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGG-GCTTCCEEEC
T ss_pred --------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhc-cCCCCCEEEC
Confidence 12334667999999999999999 78999999999999999999998 4777766 6999999999
Q ss_pred ccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEEC
Q 040540 252 STNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLAL 331 (669)
Q Consensus 252 s~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l 331 (669)
++|++.+.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|++.+.. +..+..+++++.+++
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i--------P~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL--------PSLIAQLPANCIILV 308 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC--------CGGGGGSCTTCEEEC
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc--------cHHHhhccCceEEeC
Confidence 999999999999999999999999999999999999999999999999999876642 245778899999999
Q ss_pred cCCCCccc
Q 040540 332 ASNPLGGI 339 (669)
Q Consensus 332 ~~n~l~~~ 339 (669)
..+.+...
T Consensus 309 ~~~~~~~l 316 (328)
T 4fcg_A 309 PPHLQAQL 316 (328)
T ss_dssp CGGGSCC-
T ss_pred CHHHHHHH
Confidence 98766543
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=6.6e-32 Score=292.15 Aligned_cols=359 Identities=17% Similarity=0.181 Sum_probs=227.7
Q ss_pred CCEEEEEcCCCCCccccccc-ccCCCCCCEEeCCCCcCcc----cCCcccCCCCCCCEEEccCCcCCccCCccc-cCCc-
Q 040540 51 QRVTALNLSDMGLGGTIPLH-FGNLSFLVSLDISENNFHG----HLPKELGQLRRLRVMSLAYNKLSGSFPSWI-GVLS- 123 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~- 123 (669)
.+++.||+++++++...... +..+++|++|++++|.+.+ .++..+..+++|++|+|++|.+....+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 35788999999887654443 6788899999999998874 346667788899999999998875434333 3455
Q ss_pred ---ccccccccccCccc----cCCcccCCCCCCCeeecccccccccCCccc-----CCCCCCCEEEcccCCCccc----C
Q 040540 124 ---KLRILRLDYNNFTG----PIPNSLFNLSRLEMLRAEFNIIGGTIPSRI-----GNLRKLVNLGLWSCNLQGQ----I 187 (669)
Q Consensus 124 ---~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-----~~L~~L~~L~l~~n~l~~~----~ 187 (669)
+|++|+|++|.++. .+|..+.++++|++|++++|.++...+..+ ...++|++|++++|.+++. +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68999999998873 557778888888888888888765444332 2356788888888887763 3
Q ss_pred CccccCCCCCCEEEccCCCCCCCCCcccc-----CCCCCcEEEcccCCCccc----cchhhhccCCCCCeeecccCcccc
Q 040540 188 PTEIGSLQNLKNLDLADNKLSGLIPPTIF-----NISTMRILTLESNQLSGR----LPSTIGHSLRNIEYLALSTNNLIG 258 (669)
Q Consensus 188 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~ls~n~l~~ 258 (669)
+..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+. .+++|++|++++|.+.+
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCCh
Confidence 55566677888888888887654333333 255778888888877643 344444 46777777777777654
Q ss_pred cC-----CccccCCCCCCEEeCCCCCcccc----CccccCCCCCCCEEEccCCccccCCCCCccccccccc-CCCCCCCE
Q 040540 259 KI-----PNSITNATKLIGLDLGFNSFSGH----IPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSL-TNCRNLSN 328 (669)
Q Consensus 259 ~~-----p~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l-~~l~~L~~ 328 (669)
.. +..+..+++|+.|++++|.++.. ++..+..+++|+.|++++|.+.+.... .+...+ ...++|+.
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~----~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR----LLCETLLEPGCQLES 317 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH----HHHHHHTSTTCCCCE
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH----HHHHHhccCCcccee
Confidence 32 22223467777777777777653 455566667777777777766432100 000111 12346777
Q ss_pred EECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccc-----cCCCcEEecCCCcccc----cCchhhcCC
Q 040540 329 LALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGT-----LQQLQGFYVPENNLQG----YVPHDLCHL 399 (669)
Q Consensus 329 L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~-----l~~L~~l~l~~n~~~~----~~p~~~~~l 399 (669)
|++++|.+++.....+.......++|+.+++++|.+.+..+..+.. .++|+.|++++|.+.+ .+|..+..+
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 397 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence 7777777665433222222233455666666666655433332221 3456666666666654 455555556
Q ss_pred CCCCeeeCcCCccce
Q 040540 400 ERLNILNLSGNKLSG 414 (669)
Q Consensus 400 ~~L~~L~ls~n~l~~ 414 (669)
++|+.|++++|++++
T Consensus 398 ~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 398 HSLRELDLSNNCLGD 412 (461)
T ss_dssp CCCCEEECCSSSCCH
T ss_pred CCccEEECCCCCCCH
Confidence 666666666666554
No 65
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=99.96 E-value=2.4e-30 Score=260.20 Aligned_cols=181 Identities=18% Similarity=0.262 Sum_probs=134.7
Q ss_pred ccCchhhhhhccccccccceecccccccc------------ccceeeccCCCCChHHhhhcCCC--ccCHHHHHHHHHhH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD------------FKALVLEFMPNGSLEKWLYSHNY--FLDILERLNIMIDV 512 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~------------~~~lv~ey~~~g~L~~~l~~~~~--~l~~~~~~~i~~~i 512 (669)
+.+.+|+.+++.++|||||++++++...+ ..++|||||++|+|.+++..... ..++.....|+.|+
T Consensus 48 ~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi 127 (299)
T 4g31_A 48 EKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQI 127 (299)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEEEEC----------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 45678999999999999999999886533 36899999999999999986432 34566678899999
Q ss_pred HhhhhhhhcCCCCCCeeecCCCCcc-------------------------------------cccccccccccCcccccc
Q 040540 513 GSALEYLRHGHSSAPIIHCEGEDSV-------------------------------------TQTTTMATIGYMAPEYGS 555 (669)
Q Consensus 513 ~~~l~~lh~~~~~~~i~h~d~~~~~-------------------------------------~~~~~~gt~~y~aPE~~~ 555 (669)
+.||+|||. .+|+|||+|+.. ..++.+||+.|||||++.
T Consensus 128 ~~al~ylH~----~~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~ 203 (299)
T 4g31_A 128 AEAVEFLHS----KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIH 203 (299)
T ss_dssp HHHHHHHHH----TTCCCCCCCGGGEEECTTCCEEECCCCCC--------------------------CCCTTSCHHHHT
T ss_pred HHHHHHHHH----CcCccccCcHHHeEECCCCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHc
Confidence 999999995 479999999540 011236999999999999
Q ss_pred CCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 556 EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 556 ~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
+..|+.++|||||||++|||++ ||... ......+........ + +......+.+.+++.+
T Consensus 204 ~~~y~~~~DiwSlGvilyell~---Pf~~~----~~~~~~~~~~~~~~~-----p---------~~~~~~~~~~~~li~~ 262 (299)
T 4g31_A 204 GNSYSHKVDIFSLGLILFELLY---PFSTQ----MERVRTLTDVRNLKF-----P---------PLFTQKYPCEYVMVQD 262 (299)
T ss_dssp TCCCCTHHHHHHHHHHHHHHHS---CCSSH----HHHHHHHHHHHTTCC-----C---------HHHHHHCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHcc---CCCCc----cHHHHHHHHHhcCCC-----C---------CCCcccCHHHHHHHHH
Confidence 9999999999999999999996 66431 111111111000000 0 1123344556789999
Q ss_pred cccCCCCCCCCHHHHHH
Q 040540 636 CCMESPDKRMHMTDAAA 652 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~ 652 (669)
||+.||++|||+.|+++
T Consensus 263 ~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 263 MLSPSPMERPEAINIIE 279 (299)
T ss_dssp HTCSSGGGSCCHHHHHT
T ss_pred HcCCChhHCcCHHHHhc
Confidence 99999999999999976
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=9.5e-32 Score=290.92 Aligned_cols=360 Identities=20% Similarity=0.200 Sum_probs=283.5
Q ss_pred CCCCEEeCCCCcCcccCCcc-cCCCCCCCEEEccCCcCCc----cCCccccCCcccccccccccCccccCCcccC-CCC-
Q 040540 75 SFLVSLDISENNFHGHLPKE-LGQLRRLRVMSLAYNKLSG----SFPSWIGVLSKLRILRLDYNNFTGPIPNSLF-NLS- 147 (669)
Q Consensus 75 ~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~- 147 (669)
++|++||+++|.++...... +..+++|++|++++|.+.. .++..+..+++|++|+|++|.++...+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56899999999997654443 7789999999999999874 4577788899999999999999865444433 355
Q ss_pred ---CCCeeecccccccc----cCCcccCCCCCCCEEEcccCCCcccCCcccc-----CCCCCCEEEccCCCCCCCC----
Q 040540 148 ---RLEMLRAEFNIIGG----TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIG-----SLQNLKNLDLADNKLSGLI---- 211 (669)
Q Consensus 148 ---~L~~L~l~~n~l~~----~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~l~~N~l~~~~---- 211 (669)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999984 6688999999999999999999765444332 3568999999999998743
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhc----cCCCCCeeecccCccccc----CCccccCCCCCCEEeCCCCCcccc
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGH----SLRNIEYLALSTNNLIGK----IPNSITNATKLIGLDLGFNSFSGH 283 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~----~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~ 283 (669)
+..+..+++|++|++++|.+++..+..+.. ..++|++|++++|.+.+. ++..+..+++|+.|++++|.+...
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 566777899999999999987544444332 356999999999998764 466778899999999999998754
Q ss_pred C-----ccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhh-hccccccceE
Q 040540 284 I-----PNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNF-SASLQNIYAF 357 (669)
Q Consensus 284 ~-----p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~l~~l~~l 357 (669)
. +..+..+++|+.|++++|.++.... ..+...+..+++|++|++++|.+.+..+..+... ....++|+.+
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~----~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGC----GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHH----HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHH----HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 2 3334568999999999998865310 0122345568899999999999876554444332 1223589999
Q ss_pred eecCcccCCC----CCccccccCCCcEEecCCCcccccCchhhcC-----CCCCCeeeCcCCccce----eCcccccCCC
Q 040540 358 ELGFNDLNGT----IPTSIGTLQQLQGFYVPENNLQGYVPHDLCH-----LERLNILNLSGNKLSG----HIPPCLASLT 424 (669)
Q Consensus 358 ~l~~n~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~-----l~~L~~L~ls~n~l~~----~~p~~l~~l~ 424 (669)
++++|.+++. ++..+..+++|+.|++++|.+.+..+..+.. .++|+.|++++|.+++ .+|..+..++
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 9999998865 4556677899999999999988766555443 6799999999999986 6788888899
Q ss_pred CCCEEECCCCccee
Q 040540 425 SLRELHLGSNKLSS 438 (669)
Q Consensus 425 ~L~~L~l~~N~l~~ 438 (669)
+|++|++++|++.+
T Consensus 399 ~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 399 SLRELDLSNNCLGD 412 (461)
T ss_dssp CCCEEECCSSSCCH
T ss_pred CccEEECCCCCCCH
Confidence 99999999999874
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.7e-28 Score=248.59 Aligned_cols=231 Identities=21% Similarity=0.266 Sum_probs=178.6
Q ss_pred CCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCc--cCCccccCCcccccccccccCccccCCcccCCCCCCCee
Q 040540 75 SFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSG--SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEML 152 (669)
Q Consensus 75 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 152 (669)
++|++|++++|.+....+..|.++++|++|+|++|++.. ..|..+..+++|++|+|++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 577888888888875555557788888888888888763 23566667788888888888877 466667788888888
Q ss_pred ecccccccccCC-cccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC-CCCccccCCCCCcEEEcccCC
Q 040540 153 RAEFNIIGGTIP-SRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG-LIPPTIFNISTMRILTLESNQ 230 (669)
Q Consensus 153 ~l~~n~l~~~~p-~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l~~n~ 230 (669)
++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 888888776554 567788888888888888887777778888888888888888876 567777888888888888888
Q ss_pred CccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCC-CCCCEEEccCCccccC
Q 040540 231 LSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNL-RHLSVLNVMMNNLTTE 307 (669)
Q Consensus 231 l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~ 307 (669)
+++..|..+. .+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..|..+..+ ++|+.|++++|.++..
T Consensus 187 l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 187 LEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 8755555554 57888888888888877777778888888888888888888888888877 4888888888887653
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.5e-27 Score=253.98 Aligned_cols=247 Identities=21% Similarity=0.218 Sum_probs=191.7
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccc
Q 040540 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132 (669)
Q Consensus 53 v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 132 (669)
.+.++.++.++. .+|..+. +++++|+|++|.+.+..|..|.++++|++|+|++|++.+..|..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 345677777775 4555443 6889999999999988888899999999999999999888888899999999999999
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCC-CcccCCccccCCCCCCEEEccCCCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCN-LQGQIPTEIGSLQNLKNLDLADNKLSGLI 211 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 211 (669)
|++++..+..+.++++|++|++++|.+....+..|.++++|++|++++|+ +....+..|..+++|++|++++|.+++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 99987777778889999999999998887777788888999999998854 4434444688888888888888888864
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCC
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNL 291 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 291 (669)
| .+..+++|+.|++++|.+++..|..+. .+++|++|++++|++.+..+..|..+++|+.|++++|.+.+..+..|..+
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred c-cccccccccEEECcCCcCcccCccccc-CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 3 467777788888888877755555554 57777777777777777777777777777777777777776666666667
Q ss_pred CCCCEEEccCCccc
Q 040540 292 RHLSVLNVMMNNLT 305 (669)
Q Consensus 292 ~~L~~L~l~~N~l~ 305 (669)
++|+.|++++|.+.
T Consensus 290 ~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 RYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEccCCCcC
Confidence 77777777766554
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.1e-27 Score=244.18 Aligned_cols=244 Identities=21% Similarity=0.252 Sum_probs=187.0
Q ss_pred CCCccceeeCCC---------CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCccc--CCcccCCCCCCCEEEc
Q 040540 38 ICSWAGISCGSR---------HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGH--LPKELGQLRRLRVMSL 106 (669)
Q Consensus 38 ~c~~~g~~c~~~---------~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L 106 (669)
.|.|.++.|... ...++.|++++|++....+..|.++++|++|++++|.+... .|..+..+++|++|++
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 467887777642 24678888888888754444577888888888888887632 3566667888888888
Q ss_pred cCCcCCccCCccccCCcccccccccccCccccCC-cccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcc
Q 040540 107 AYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIP-NSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQG 185 (669)
Q Consensus 107 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~ 185 (669)
++|.+. .+|..+..+++|++|++++|++++..+ ..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 888877 466678888888888888888876554 567788888888888888887788888888888888888888876
Q ss_pred -cCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccc
Q 040540 186 -QIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSI 264 (669)
Q Consensus 186 -~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~ 264 (669)
.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+. .+++|++|++++|++.+..|..+
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT-TCTTCCEEECTTSCCCBCSSSSC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc-CcccCCEeECCCCCCcccCHHHH
Confidence 5677788888888888888888877777888888888888888888754343443 57888888888888888878777
Q ss_pred cCCC-CCCEEeCCCCCcccc
Q 040540 265 TNAT-KLIGLDLGFNSFSGH 283 (669)
Q Consensus 265 ~~l~-~L~~L~ls~n~l~~~ 283 (669)
..++ +|+.|++++|.+.+.
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCCTTCCEEECTTCCEECS
T ss_pred HhhhccCCEEEccCCCeecc
Confidence 7774 788888888887654
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.4e-30 Score=263.16 Aligned_cols=248 Identities=22% Similarity=0.252 Sum_probs=138.5
Q ss_pred CCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcC-CccCCcccc-------CCcccccccccccCccccCCccc-
Q 040540 73 NLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKL-SGSFPSWIG-------VLSKLRILRLDYNNFTGPIPNSL- 143 (669)
Q Consensus 73 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~~- 143 (669)
..++|+.|++++|.+ .+|..+... |+.|+|++|.+ .+.+|..+. ++++|++|+|++|++++..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344455555555555 444444332 55555555555 233444443 45555555555555555555544
Q ss_pred -CCCCCCCeeecccccccccCCcccCCC-----CCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC--CCccc
Q 040540 144 -FNLSRLEMLRAEFNIIGGTIPSRIGNL-----RKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL--IPPTI 215 (669)
Q Consensus 144 -~~l~~L~~L~l~~n~l~~~~p~~~~~L-----~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--~p~~~ 215 (669)
..+++|++|++++|.+++. |..++.+ ++|++|++++|++.+..|..|+.+++|++|++++|.+.+. .|..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 5555555555555555554 5555444 5666666666666655555666666666666666665543 22233
Q ss_pred --cCCCCCcEEEcccCCCcc--ccchhhhccCCCCCeeecccCcccccCC-ccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 216 --FNISTMRILTLESNQLSG--RLPSTIGHSLRNIEYLALSTNNLIGKIP-NSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 216 --~~l~~L~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
..+++|++|++++|.+++ .++..++..+++|++|++++|++.+..| ..+..+++|+.|++++|.++ .+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 555666666666666652 2333343355666666666666666553 34445666666666666666 4555444
Q ss_pred CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCcc
Q 040540 291 LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGG 338 (669)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 338 (669)
++|+.|++++|++++.+ .+..+++|+.|++++|++++
T Consensus 274 -~~L~~L~Ls~N~l~~~p----------~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRNP----------SPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSCC----------CTTTSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCCh----------hHhhCCCCCEEeccCCCCCC
Confidence 56666777666665541 13455666677777776654
No 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=9.1e-27 Score=249.81 Aligned_cols=247 Identities=21% Similarity=0.225 Sum_probs=187.5
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccc
Q 040540 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132 (669)
Q Consensus 53 v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 132 (669)
.+.++.+++++. .+|..+. ++++.|+|++|.+.+..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 356777777776 4565543 6889999999999988888899999999999999999877778899999999999999
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCC-CcccCCccccCCCCCCEEEccCCCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCN-LQGQIPTEIGSLQNLKNLDLADNKLSGLI 211 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 211 (669)
|++++..+..|..+++|++|++++|.+....+..|.++++|++|++++|+ +....+..|..+++|++|++++|.++..
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI- 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence 99987767778889999999999998887777788888899999998855 4434444688888888888888888743
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCC
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNL 291 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 291 (669)
| .+..+++|+.|++++|.+++..|..+. .+++|++|++++|++.+..+..|..+++|+.|++++|.+.+..+..|..+
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhc-cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 3 366677777777777777654444443 56677777777777766666666666777777777776665555556666
Q ss_pred CCCCEEEccCCccc
Q 040540 292 RHLSVLNVMMNNLT 305 (669)
Q Consensus 292 ~~L~~L~l~~N~l~ 305 (669)
++|+.|++++|.+.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 66666666666543
No 72
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=7.1e-27 Score=251.57 Aligned_cols=238 Identities=22% Similarity=0.238 Sum_probs=213.6
Q ss_pred ccceeeCCC---------CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcC
Q 040540 41 WAGISCGSR---------HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKL 111 (669)
Q Consensus 41 ~~g~~c~~~---------~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 111 (669)
|..+.|... ...++.|+|++|++.+..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 456677542 25789999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCccccCCcccccccccccCccccCCcccCCCCCCCeeeccccc-ccccCCcccCCCCCCCEEEcccCCCcccCCcc
Q 040540 112 SGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNI-IGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTE 190 (669)
Q Consensus 112 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~ 190 (669)
.+..+..|.++++|++|+|++|++++..+..|.++++|+.|++++|+ +....+..+.++++|++|++++|++++. | .
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~ 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-N 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-C
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-c
Confidence 97777889999999999999999998777889999999999999954 5444455799999999999999999854 4 4
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCC
Q 040540 191 IGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKL 270 (669)
Q Consensus 191 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 270 (669)
+..+++|++|+|++|.+++..|..|.++++|+.|++++|.+++..|..+. .+++|++|+|++|++++..+..+..+++|
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD-GLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc-CCCCCCEEECCCCcCCccChHHhccccCC
Confidence 88999999999999999999999999999999999999999866666554 79999999999999998888889999999
Q ss_pred CEEeCCCCCcc
Q 040540 271 IGLDLGFNSFS 281 (669)
Q Consensus 271 ~~L~ls~n~l~ 281 (669)
+.|++++|.+.
T Consensus 293 ~~L~L~~Np~~ 303 (452)
T 3zyi_A 293 VELHLHHNPWN 303 (452)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEccCCCcC
Confidence 99999999875
No 73
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.3e-28 Score=250.58 Aligned_cols=257 Identities=20% Similarity=0.211 Sum_probs=219.7
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|++++..+..++++++|++|+|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 57999999999999877778999999999999999999988899999999999999999999655566999999999999
Q ss_pred cccCccccCC-cccCCCCCCCeeecccc-cccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCC
Q 040540 131 DYNNFTGPIP-NSLFNLSRLEMLRAEFN-IIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLS 208 (669)
Q Consensus 131 ~~n~l~~~~p-~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 208 (669)
++|++++..+ ..+.++++|++|++++| .+....+..+.++++|++|++++|.+.+..|..++.+++|++|++++|.++
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9999985444 47899999999999999 477777889999999999999999999999999999999999999999997
Q ss_pred CCCCccccCCCCCcEEEcccCCCccccchhhh--ccCCCCCeeecccCcccc----cCCccccCCCCCCEEeCCCCCccc
Q 040540 209 GLIPPTIFNISTMRILTLESNQLSGRLPSTIG--HSLRNIEYLALSTNNLIG----KIPNSITNATKLIGLDLGFNSFSG 282 (669)
Q Consensus 209 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~~l~~L~~L~ls~n~l~~----~~p~~~~~l~~L~~L~ls~n~l~~ 282 (669)
...+..+..+++|+.|++++|.+++..+..+. .....++.++++++.+.+ .+|..+..+++|+.|++++|.+..
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 55444455689999999999999864433322 134567888888887765 367778899999999999999995
Q ss_pred cCccccCCCCCCCEEEccCCccccC
Q 040540 283 HIPNTFGNLRHLSVLNVMMNNLTTE 307 (669)
Q Consensus 283 ~~p~~~~~l~~L~~L~l~~N~l~~~ 307 (669)
..+..|..+++|+.|++++|.+...
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCc
Confidence 4444468999999999999988653
No 74
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.95 E-value=1.4e-28 Score=269.82 Aligned_cols=186 Identities=19% Similarity=0.205 Sum_probs=148.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.+++.++|||||++++++......++|||||++|+|.+++.+....+++.+...|+.|++.||+|||. .
T Consensus 199 ~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~----~ 274 (573)
T 3uto_A 199 ETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHE----N 274 (573)
T ss_dssp HHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 346679999999999999999999999999999999999999999998666679999999999999999999995 4
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+|+|||+|+.. .....+||+.|||||++.+..|+.++||||+||++|||++|+.
T Consensus 275 ~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~ 354 (573)
T 3uto_A 275 NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLS 354 (573)
T ss_dssp TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCC
T ss_pred CeeeccCChhhccccCCCCCCEEEeeccceeEccCCCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence 89999999531 1123369999999999999999999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||.+.. ...+...+..... .... +.+...+..+.+|+.+||+.||.+|||+.|+++
T Consensus 355 Pf~~~~--~~~~~~~i~~~~~-~~~~-------------~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 355 PFGGEN--DDETLRNVKSCDW-NMDD-------------SAFSGISEDGKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp SSCCSS--HHHHHHHHHTTCC-CCCS-------------GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCCCcC--HHHHHHHHHhCCC-CCCc-------------ccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 997532 1112222211110 0000 012233456789999999999999999999976
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=8e-29 Score=268.21 Aligned_cols=302 Identities=19% Similarity=0.171 Sum_probs=173.3
Q ss_pred cccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEc
Q 040540 123 SKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDL 202 (669)
Q Consensus 123 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 202 (669)
++|++|+|++|.+++..|..|..+++|++|++++|.+++..| ++.+++|++|++++|.+++..+ .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 467777777777776666667777777777777776665544 6666666666666666654322 255666666
Q ss_pred cCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccc
Q 040540 203 ADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSG 282 (669)
Q Consensus 203 ~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~ 282 (669)
++|.+++..+. . +++|++|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus 107 ~~N~l~~~~~~---~-------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 107 ANNNISRVSCS---R-------------------------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp CSSCCCCEEEC---C-------------------------CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred cCCcCCCCCcc---c-------------------------cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 66666544322 2 3344455555555544444445555555555555555555
Q ss_pred cCccccC-CCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecC
Q 040540 283 HIPNTFG-NLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGF 361 (669)
Q Consensus 283 ~~p~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~ 361 (669)
..|..+. .+++|+.|++++|.+++.+ ....+++|+.|++++|.+++..+. + ..+++|..+++++
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~----------~~~~l~~L~~L~Ls~N~l~~~~~~-~----~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDVK----------GQVVFAKLKTLDLSSNKLAFMGPE-F----QSAAGVTWISLRN 223 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEE----------CCCCCTTCCEEECCSSCCCEECGG-G----GGGTTCSEEECTT
T ss_pred cChHHHhhhCCcccEEecCCCcccccc----------ccccCCCCCEEECCCCCCCCCCHh-H----cCCCCccEEEecC
Confidence 4444443 4555556666555554431 122355666666666666654443 2 1345666777777
Q ss_pred cccCCCCCccccccCCCcEEecCCCccc-ccCchhhcCCCCCCeeeCcCCc-cceeCcccccCCCCCCE---EECC--CC
Q 040540 362 NDLNGTIPTSIGTLQQLQGFYVPENNLQ-GYVPHDLCHLERLNILNLSGNK-LSGHIPPCLASLTSLRE---LHLG--SN 434 (669)
Q Consensus 362 n~l~~~~~~~~~~l~~L~~l~l~~n~~~-~~~p~~~~~l~~L~~L~ls~n~-l~~~~p~~l~~l~~L~~---L~l~--~N 434 (669)
|.+.+ +|..+..+++|+.+++++|.+. +.+|..+..+..|+.++++.+. +.+..|. ....+.... +... +.
T Consensus 224 N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~c~~~~~~~~~~~~~~~~~~ 301 (487)
T 3oja_A 224 NKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE-ECTVPTLGHYGAYCCEDLPA 301 (487)
T ss_dssp SCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSC-CCSSTTCEEETTEEECCCSC
T ss_pred CcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcc-cccCCccccccccccccccc
Confidence 77764 5566777888999999999887 6677778878777777775211 1111110 011111100 0000 00
Q ss_pred cce----------ecCCcccccccCchhhhhhccccccccceeccccccccc
Q 040540 435 KLS----------SSIPSSLAFRSFDSECEVLRNVRHRNLIKIISSCSNPDF 476 (669)
Q Consensus 435 ~l~----------~~~p~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 476 (669)
.+. ...-...+.+.|..|++.+.+++|+|+|+++|||..+..
T Consensus 302 ~~~~~l~~~~~~~~~~~~~~g~~eF~~Eve~L~~i~HrNLV~L~gyC~s~~~ 353 (487)
T 3oja_A 302 PFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVID 353 (487)
T ss_dssp HHHHHHHHHHHHHHCSCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred hhhhHHHHHHHHhhhhcccccHHHHHHHHHHHhcccccchhhHHHHhcChHH
Confidence 000 000112235689999999999999999999999987543
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.2e-29 Score=255.92 Aligned_cols=246 Identities=17% Similarity=0.184 Sum_probs=169.3
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcC-cccCCcccC-------CCCCCCEEEccCCcCCccCCccc--c
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNF-HGHLPKELG-------QLRRLRVMSLAYNKLSGSFPSWI--G 120 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~~--~ 120 (669)
.+++.|++++|.+ .+|..+... |+.|+|++|.+ .+.+|..+. ++++|++|+|++|++.+.+|..+ +
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3466667777777 555544433 77777777777 345555554 67777777777777777777665 7
Q ss_pred CCcccccccccccCccccCCcccCCC-----CCCCeeecccccccccCCcccCCCCCCCEEEcccCCCccc--CCccc--
Q 040540 121 VLSKLRILRLDYNNFTGPIPNSLFNL-----SRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQ--IPTEI-- 191 (669)
Q Consensus 121 ~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~--~p~~~-- 191 (669)
.+++|++|+|++|++++. |..++.+ ++|++|++++|.+.+..|..++.+++|++|++++|++.+. .|..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 777777777777777765 6666665 7777777777777777777777777777777777777654 23333
Q ss_pred cCCCCCCEEEccCCCCCCC--CC-ccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCC
Q 040540 192 GSLQNLKNLDLADNKLSGL--IP-PTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNAT 268 (669)
Q Consensus 192 ~~l~~L~~L~l~~N~l~~~--~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~ 268 (669)
+.+++|++|++++|.+++. ++ ..+.++++|++|++++|.+++..|...+..+++|++|++++|+++ .+|..+. +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C
Confidence 6777777777777777732 22 223466777777777777776554443335677777777777776 5565555 6
Q ss_pred CCCEEeCCCCCccccCccccCCCCCCCEEEccCCcccc
Q 040540 269 KLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTT 306 (669)
Q Consensus 269 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 306 (669)
+|+.|++++|.+.+. |. +..+++|+.|++++|.+++
T Consensus 275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 777777777777755 44 7777777777777777654
No 77
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=99.95 E-value=2.8e-28 Score=254.61 Aligned_cols=197 Identities=19% Similarity=0.183 Sum_probs=140.3
Q ss_pred cCchhhhhhccccccccceecccccc------ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSN------PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~------~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+.+|+.+++.++|||||++++++.. ....|||||||+ |+|.+++.+ ...+++.....|+.|+++||+|||.
T Consensus 99 ~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~-g~L~~~i~~-~~~l~~~~~~~~~~qil~al~ylH~ 176 (398)
T 4b99_A 99 RTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLME-SDLHQIIHS-SQPLTLEHVRYFLYQLLRGLKYMHS 176 (398)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEEEEECCS-EEHHHHHTS-SSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcceEeeeeecccccccCCEEEEEEeCCC-CCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999987653 356799999996 789999975 4568999999999999999999995
Q ss_pred CCCCCCeeecCCCCcc-----------------------------cccccccccccCccccccCC-CcCccccchhhHHH
Q 040540 522 GHSSAPIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVL 571 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvi 571 (669)
.+|+|||+|+.. ...+.+||+.|||||++.+. .|+.++||||+||+
T Consensus 177 ----~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~i 252 (398)
T 4b99_A 177 ----AQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCI 252 (398)
T ss_dssp ----TTCBCCCCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHH
T ss_pred ----CcCcCCCcCccccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHH
Confidence 489999999530 11234799999999998774 57999999999999
Q ss_pred HHHHHhCCCCCCcCCCCCccHHHHHHHhC--CC-Cccccccc--------cccc-hhhhh-hhhHHHHHHHHHHHhhccc
Q 040540 572 LMETFTRKRPTDEMFTGEMSLRRWVKESL--PH-RLSEVVDT--------NLVR-EEQAF-SAKMDCLLSIMDLALDCCM 638 (669)
Q Consensus 572 l~el~tg~~p~~~~~~~~~~l~~~~~~~~--~~-~~~~~~~~--------~~~~-~~~~~-~~~~~~~~~~~~l~~~c~~ 638 (669)
+|||+||+.||.+.. ...+...+.... +. .....+.. .+.. ....+ .........+.+++.+|++
T Consensus 253 l~ell~G~~pF~g~~--~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~ 330 (398)
T 4b99_A 253 FGEMLARRQLFPGKN--YVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLR 330 (398)
T ss_dssp HHHHHHTSCSSCCSS--HHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSC
T ss_pred HHHHHHCCCCCCCCC--HHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCc
Confidence 999999999997532 111111111111 10 00000000 0000 00000 0011234567899999999
Q ss_pred CCCCCCCCHHHHHH
Q 040540 639 ESPDKRMHMTDAAA 652 (669)
Q Consensus 639 ~~P~~Rps~~~v~~ 652 (669)
.||++|||+.|+++
T Consensus 331 ~dP~~R~ta~e~L~ 344 (398)
T 4b99_A 331 FEPSARISAAAALR 344 (398)
T ss_dssp SSTTTSCCHHHHTT
T ss_pred CChhHCcCHHHHhc
Confidence 99999999999875
No 78
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=99.95 E-value=1.5e-27 Score=244.76 Aligned_cols=204 Identities=30% Similarity=0.502 Sum_probs=163.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC---CccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---YFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+..|+..+..++|||++++++++...+..++||||+++|+|.+++.... ..+++..+..++.++++|++|||.
T Consensus 80 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~-- 157 (321)
T 2qkw_B 80 EEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHT-- 157 (321)
T ss_dssp HHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcC--
Confidence 456789999999999999999999999999999999999999999997533 358999999999999999999995
Q ss_pred CCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 524 SSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 524 ~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||+
T Consensus 158 --~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell 235 (321)
T 2qkw_B 158 --RAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVL 235 (321)
T ss_dssp --TTEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHH
T ss_pred --CCeecCCCCHHHEEECCCCCEEEeecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHH
Confidence 489999998541 011124899999999998888999999999999999999
Q ss_pred hCCCCCCcCCC-CCccHHHHHHHhCC-CCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 577 TRKRPTDEMFT-GEMSLRRWVKESLP-HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 577 tg~~p~~~~~~-~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
||+.||..... +......|...... ......+++.+... ...+.+..+.+++.+||+.||++|||+.||++.|
T Consensus 236 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L 310 (321)
T 2qkw_B 236 CARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADK-----IRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKL 310 (321)
T ss_dssp HCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTC-----SCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred hCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccc-----cCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence 99999976433 33445666543322 22334444443221 2456778899999999999999999999999999
Q ss_pred HHhHH
Q 040540 655 KKIKV 659 (669)
Q Consensus 655 ~~~~~ 659 (669)
+.+.+
T Consensus 311 ~~~l~ 315 (321)
T 2qkw_B 311 EYALR 315 (321)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98865
No 79
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.9e-26 Score=247.31 Aligned_cols=238 Identities=22% Similarity=0.245 Sum_probs=213.1
Q ss_pred ccceeeCCC---------CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcC
Q 040540 41 WAGISCGSR---------HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKL 111 (669)
Q Consensus 41 ~~g~~c~~~---------~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 111 (669)
|..+.|... ...++.|+|++|++.+..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 456777542 25689999999999998889999999999999999999988889999999999999999999
Q ss_pred CccCCccccCCcccccccccccCccccCCcccCCCCCCCeeeccccc-ccccCCcccCCCCCCCEEEcccCCCcccCCcc
Q 040540 112 SGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNI-IGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTE 190 (669)
Q Consensus 112 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~ 190 (669)
++..+..|..+++|++|+|++|.++...+..|.++++|+.|++++|+ +....+..|.++++|++|++++|+++ .+| .
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~ 202 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-N 202 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-C
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-c
Confidence 97777789999999999999999998888899999999999999955 44444557999999999999999998 455 4
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCC
Q 040540 191 IGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKL 270 (669)
Q Consensus 191 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 270 (669)
+..+++|++|+|++|.+++..|..|.++++|+.|++++|.+++..+..+. .+++|++|+|++|++++..+..+..+++|
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD-NLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST-TCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc-CCCCCCEEECCCCCCCccChhHhccccCC
Confidence 88999999999999999999999999999999999999999865555554 79999999999999998888889999999
Q ss_pred CEEeCCCCCcc
Q 040540 271 IGLDLGFNSFS 281 (669)
Q Consensus 271 ~~L~ls~n~l~ 281 (669)
+.|++++|.+.
T Consensus 282 ~~L~L~~Np~~ 292 (440)
T 3zyj_A 282 ERIHLHHNPWN 292 (440)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEcCCCCcc
Confidence 99999999875
No 80
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.5e-26 Score=233.16 Aligned_cols=225 Identities=21% Similarity=0.204 Sum_probs=152.6
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
+.++.+++++.. +|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 567888888763 44433 468888899988888777777888888888888888888777888888888888888888
Q ss_pred C-ccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCC
Q 040540 134 N-FTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIP 212 (669)
Q Consensus 134 ~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 212 (669)
. ++...|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+++..+..|+.+++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 665556667777777777777776666666666666666666666666665555556666666666666666554433
Q ss_pred ccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCC
Q 040540 213 PTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLR 292 (669)
Q Consensus 213 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~ 292 (669)
..+.. +++|++|++++|++.+..|..+..+++|+.|++++|.+.+..+..+..++
T Consensus 171 ~~~~~-------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 171 RAFRG-------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTTTT-------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred HHhcC-------------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 33444 45555555555555555555566666666666666666655555566667
Q ss_pred CCCEEEccCCcccc
Q 040540 293 HLSVLNVMMNNLTT 306 (669)
Q Consensus 293 ~L~~L~l~~N~l~~ 306 (669)
+|+.|++++|.+..
T Consensus 226 ~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 226 ALQYLRLNDNPWVC 239 (285)
T ss_dssp TCCEEECCSSCEEC
T ss_pred ccCEEeccCCCccC
Confidence 77777777666654
No 81
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.6e-26 Score=231.32 Aligned_cols=254 Identities=23% Similarity=0.241 Sum_probs=167.2
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 78 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
++++.+++.+. .+|..+ .++|+.|++++|.+.+..+..|..+++|++|+|++|.+++..|..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777777776 345433 357777777777777666666777777777777777776655666666666666666666
Q ss_pred c-ccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccc
Q 040540 158 I-IGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLP 236 (669)
Q Consensus 158 ~-l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 236 (669)
. +....|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++. +
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------------~ 145 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL-------------------------P 145 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------------------C
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc-------------------------C
Confidence 4 4444455555555555555555555544444455555555555555544433 2
Q ss_pred hhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCccccc
Q 040540 237 STIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSF 316 (669)
Q Consensus 237 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 316 (669)
...+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..|..|..+++|+.|++++|++++.+.
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------- 218 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT------- 218 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-------
T ss_pred HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-------
Confidence 2222256777777777777776666678899999999999999999889999999999999999999887531
Q ss_pred ccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccc
Q 040540 317 LSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI 372 (669)
Q Consensus 317 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~ 372 (669)
..+..+++|+.|++++|++....+... + ...+..+....+.+....|..+
T Consensus 219 -~~~~~l~~L~~L~l~~N~~~c~~~~~~--~---~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 219 -EALAPLRALQYLRLNDNPWVCDCRARP--L---WAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp -HHHTTCTTCCEEECCSSCEECSGGGHH--H---HHHHHHCCSEECCCBEEESGGG
T ss_pred -HHcccCcccCEEeccCCCccCCCCcHH--H---HHHHHhcccccCccccCCchHh
Confidence 336778999999999999876543221 0 1112223344555555555554
No 82
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=99.94 E-value=4.9e-28 Score=250.16 Aligned_cols=129 Identities=19% Similarity=0.274 Sum_probs=111.1
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+.+|+.++..+ .||||+++++++...+..++|||||++|+|.+++.. +++.+...|+.|++.||+|||. .
T Consensus 65 ~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~lvmE~~~g~~L~~~~~~----l~~~~~~~~~~qll~al~ylH~----~ 136 (361)
T 4f9c_A 65 RIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILNS----LSFQEVREYMLNLFKALKRIHQ----F 136 (361)
T ss_dssp HHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEEEEECCCCCCHHHHHTT----CCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEEECCEEEEEEeCCCcccHHHHHcC----CCHHHHHHHHHHHHHHHHHHHH----C
Confidence 345788888887 699999999999999999999999999999999952 7888999999999999999995 4
Q ss_pred CeeecCCCCccc------------------------------------------------------ccccccccccCccc
Q 040540 527 PIIHCEGEDSVT------------------------------------------------------QTTTMATIGYMAPE 552 (669)
Q Consensus 527 ~i~h~d~~~~~~------------------------------------------------------~~~~~gt~~y~aPE 552 (669)
+|+|||+|+... .++.+||+.|||||
T Consensus 137 gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE 216 (361)
T 4f9c_A 137 GIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPE 216 (361)
T ss_dssp TEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHH
T ss_pred CeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHH
Confidence 899999995410 01235999999999
Q ss_pred cccCC-CcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 553 YGSEG-IVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 553 ~~~~~-~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
++.+. .|+.++||||+||++|||+||+.||..
T Consensus 217 ~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~ 249 (361)
T 4f9c_A 217 VLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYK 249 (361)
T ss_dssp HHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSC
T ss_pred HHcCCCCCCCccchhhhHHHHHHHHHCCCCCCC
Confidence 98775 589999999999999999999999965
No 83
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=99.94 E-value=2.3e-27 Score=244.04 Aligned_cols=204 Identities=32% Similarity=0.484 Sum_probs=164.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC---CccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---YFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+..|+..+..++|||+++++++|......++||||+++|+|.++++... ..+++..+..|+.++++|++|||.. .
T Consensus 73 ~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~ 151 (326)
T 3uim_A 73 QFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDH-C 151 (326)
T ss_dssp HHHHHHHGGGTCCCTTBCCCCEEECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHS-S
T ss_pred HHHHHHHHHHhccCCCccceEEEEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence 46779999999999999999999999999999999999999999998632 3589999999999999999999964 2
Q ss_pred CCCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 525 SAPIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 525 ~~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.++++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||
T Consensus 152 ~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g 231 (326)
T 3uim_A 152 DPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITG 231 (326)
T ss_dssp SSCEECCCCSGGGEEECTTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHC
T ss_pred CCCeEeCCCchhhEEECCCCCEEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhC
Confidence 4589999999531 01112389999999999888899999999999999999999
Q ss_pred CCCCCc---CCCCCccHHHHHHHhCCCC-ccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 579 KRPTDE---MFTGEMSLRRWVKESLPHR-LSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 579 ~~p~~~---~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
+.||.. .......+.+|+....... .....+..+.. ....+....+.+++.+||+.||.+|||+.||++.|
T Consensus 232 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L 306 (326)
T 3uim_A 232 QRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQG-----NYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRML 306 (326)
T ss_dssp CCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTT-----SCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHH
T ss_pred CCcccccccccccchhHHHHHHHHhhchhhhhhcChhhcc-----ccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHh
Confidence 999963 2234456777776655432 33333333322 23567778899999999999999999999999999
Q ss_pred HHh
Q 040540 655 KKI 657 (669)
Q Consensus 655 ~~~ 657 (669)
++.
T Consensus 307 ~~~ 309 (326)
T 3uim_A 307 EGD 309 (326)
T ss_dssp HTS
T ss_pred cCc
Confidence 863
No 84
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=99.94 E-value=9.9e-28 Score=260.95 Aligned_cols=177 Identities=15% Similarity=0.178 Sum_probs=138.4
Q ss_pred hhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecC
Q 040540 453 CEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCE 532 (669)
Q Consensus 453 ~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d 532 (669)
+.++..++|||||++++++...+..|+|||||++|+|.++|.+. ..+++.....|+.||+.||+|||. .+|||||
T Consensus 243 l~ll~~~~HP~IV~l~~~f~~~~~lylVmEy~~GGdL~~~l~~~-~~l~E~~a~~y~~qIl~aL~yLH~----~gIiHRD 317 (689)
T 3v5w_A 243 LSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH-GVFSEADMRFYAAEIILGLEHMHN----RFVVYRD 317 (689)
T ss_dssp HHHHSSSCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHT----TTEECCC
T ss_pred HHHHhhCCCCCEeEEEEEEEECCEEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CCccccC
Confidence 55667789999999999999999999999999999999999864 458999999999999999999994 5899999
Q ss_pred CCCc-----------------------ccccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCCCCcCCCC
Q 040540 533 GEDS-----------------------VTQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTG 588 (669)
Q Consensus 533 ~~~~-----------------------~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~ 588 (669)
+|+. ....+.+||+.|||||++.+ ..|+.++||||+||++|||+||+.||......
T Consensus 318 LKPeNILld~~G~vKL~DFGlA~~~~~~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~ 397 (689)
T 3v5w_A 318 LKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK 397 (689)
T ss_dssp CSGGGEEECTTSCEEECCCTTCEECSSCCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCC
T ss_pred CchHHeEEeCCCCEEecccceeeecCCCCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH
Confidence 9954 12234579999999999865 57999999999999999999999999753322
Q ss_pred Cc-cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC-----HHHHHH
Q 040540 589 EM-SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH-----MTDAAA 652 (669)
Q Consensus 589 ~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps-----~~~v~~ 652 (669)
.. .+....... +.. .+...+..+.+++.+|++.||.+|++ ++||.+
T Consensus 398 ~~~~i~~~i~~~-~~~-----------------~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 398 DKHEIDRMTLTM-AVE-----------------LPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp CHHHHHHHHHHC-CCC-----------------CCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred HHHHHHHhhcCC-CCC-----------------CCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence 21 111111111 100 11223456789999999999999998 566643
No 85
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=99.94 E-value=6.4e-28 Score=246.33 Aligned_cols=192 Identities=22% Similarity=0.392 Sum_probs=156.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.++++.....+++.++..++.++++||+|||..
T Consensus 52 ~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---- 127 (310)
T 3s95_A 52 RTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSM---- 127 (310)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 4577899999999999999999999988889999999999999999987667799999999999999999999954
Q ss_pred CeeecCCCCccc---------------------------------------ccccccccccCccccccCCCcCccccchh
Q 040540 527 PIIHCEGEDSVT---------------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYS 567 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s 567 (669)
+++|+|+|+... .....||+.|+|||++.+..++.++||||
T Consensus 128 ~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s 207 (310)
T 3s95_A 128 NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFS 207 (310)
T ss_dssp TEECSCCSTTSEEECTTSCEEECCCTTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHH
T ss_pred CccCCCCCcCeEEECCCCCEEEeecccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHH
Confidence 799999995410 00335899999999999988999999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCC----ccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 568 YGVLLMETFTRKRPTDEMFTGE----MSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
|||++|||++|..|+....... ........... +..++..+.+++.+||+.||++
T Consensus 208 lG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~l~~li~~~l~~dP~~ 266 (310)
T 3s95_A 208 FGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYC---------------------PPNCPPSFFPITVRCCDLDPEK 266 (310)
T ss_dssp HHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTC---------------------CTTCCTTHHHHHHHHTCSSGGG
T ss_pred HHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccC---------------------CCCCCHHHHHHHHHHccCChhh
Confidence 9999999999999986533211 11111111111 1122345789999999999999
Q ss_pred CCCHHHHHHHHHHhHHHhhh
Q 040540 644 RMHMTDAAAKLKKIKVKFLD 663 (669)
Q Consensus 644 Rps~~~v~~~l~~~~~~~~~ 663 (669)
|||+.|+++.|++++..+..
T Consensus 267 Rps~~~l~~~L~~l~~~~~~ 286 (310)
T 3s95_A 267 RPSFVKLEHWLETLRMHLAG 286 (310)
T ss_dssp SCCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhccC
Confidence 99999999999999887654
No 86
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=99.94 E-value=1.2e-27 Score=250.96 Aligned_cols=191 Identities=23% Similarity=0.378 Sum_probs=153.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||+++++++|......++||||+++|+|.++++..+..+++.....++.|+++|++|||. .
T Consensus 157 ~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~----~ 232 (377)
T 3cbl_A 157 AKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLES----K 232 (377)
T ss_dssp TTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 467889999999999999999999998888999999999999999998766678999999999999999999995 4
Q ss_pred CeeecCCCCccc-----------------------c----cccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 527 PIIHCEGEDSVT-----------------------Q----TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 527 ~i~h~d~~~~~~-----------------------~----~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
+++|||+|+... . ....++..|+|||++....++.++|||||||++|||+| |
T Consensus 233 ~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g 312 (377)
T 3cbl_A 233 CCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLG 312 (377)
T ss_dssp TEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTS
T ss_pred CcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCC
Confidence 799999995410 0 01124667999999988889999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||.... .......+...... +.+..++..+.+++.+||+.||++|||+.++++.|++++
T Consensus 313 ~~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~ 373 (377)
T 3cbl_A 313 ASPYPNLS--NQQTREFVEKGGRL-----------------PCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIR 373 (377)
T ss_dssp CCSSTTSC--HHHHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCC--HHHHHHHHHcCCCC-----------------CCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 99987632 12223333222111 011223456789999999999999999999999999997
Q ss_pred HH
Q 040540 659 VK 660 (669)
Q Consensus 659 ~~ 660 (669)
.+
T Consensus 374 ~~ 375 (377)
T 3cbl_A 374 KR 375 (377)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 87
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=99.94 E-value=7.6e-27 Score=239.56 Aligned_cols=202 Identities=18% Similarity=0.240 Sum_probs=148.9
Q ss_pred Cchhhhhhccccccccceeccccccccc----cceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC--
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPDF----KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG-- 522 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~~----~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~-- 522 (669)
+..|+..+..++|||++++++++..... .++||||+++|+|.++++.. .+++..+..++.++++|++|||..
T Consensus 65 ~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~qi~~al~~LH~~~~ 142 (322)
T 3soc_A 65 NEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN--VVSWNELCHIAETMARGLAYLHEDIP 142 (322)
T ss_dssp HHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3457888999999999999999876443 58999999999999999763 489999999999999999999942
Q ss_pred ----CCCCCeeecCCCCcc---------------------------cccccccccccCccccccC-----CCcCccccch
Q 040540 523 ----HSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSE-----GIVSAKCDVY 566 (669)
Q Consensus 523 ----~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~ 566 (669)
...++|+|||+|+.. ......||+.|+|||++.+ ..++.++|||
T Consensus 143 ~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Diw 222 (322)
T 3soc_A 143 GLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMY 222 (322)
T ss_dssp EETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHH
T ss_pred ccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhH
Confidence 001289999999531 0112358999999999876 3467799999
Q ss_pred hhHHHHHHHHhCCCCCCcCCCCC-c----------cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 567 SYGVLLMETFTRKRPTDEMFTGE-M----------SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 567 s~Gvil~el~tg~~p~~~~~~~~-~----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
||||++|||+||+.||....... . ....+.......... +.+.. ......++..+.+++.+
T Consensus 223 slG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~l~~li~~ 294 (322)
T 3soc_A 223 AMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKR----PVLRD----YWQKHAGMAMLCETIEE 294 (322)
T ss_dssp HHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCC----CCCCG----GGGSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCC----CCccc----cccccchHHHHHHHHHH
Confidence 99999999999999997533211 1 111121111111111 11111 11123456678999999
Q ss_pred cccCCCCCCCCHHHHHHHHHHhHHH
Q 040540 636 CCMESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
||+.||++|||+.||++.|+++.+.
T Consensus 295 cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 295 CWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HccCChhhCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999765
No 88
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=99.94 E-value=3.2e-27 Score=246.86 Aligned_cols=192 Identities=21% Similarity=0.380 Sum_probs=153.3
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMI 510 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~ 510 (669)
+.+..|+.++..+ +|||+++++++|...+..++||||+++|+|.+++.... ..+++.++..++.
T Consensus 131 ~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 210 (370)
T 2psq_A 131 SDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTY 210 (370)
T ss_dssp HHHHHHHHHHHHSCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEeeEEEEEccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHH
Confidence 4567899999999 89999999999999999999999999999999997643 2478899999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccc
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKC 563 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~ 563 (669)
|+++||+|||. .+|+|||+|+.. ......||+.|+|||++.+..++.++
T Consensus 211 qi~~aL~~LH~----~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~ 286 (370)
T 2psq_A 211 QLARGMEYLAS----QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQS 286 (370)
T ss_dssp HHHHHHHHHHH----TTEECSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHh----CCeeccccchhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHH
Confidence 99999999995 479999999531 01112367889999999888899999
Q ss_pred cchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 564 DVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 564 Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
|||||||++|||+| |+.||.... ...+...+....... .+..+...+.+++.+||+.||+
T Consensus 287 DvwslG~il~ellt~g~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dP~ 347 (370)
T 2psq_A 287 DVWSFGVLMWEIFTLGGSPYPGIP--VEELFKLLKEGHRMD-----------------KPANCTNELYMMMRDCWHAVPS 347 (370)
T ss_dssp HHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHTTCCCC-----------------CCTTSCHHHHHHHHHHTCSSGG
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHhcCCCCC-----------------CCCCCCHHHHHHHHHHcCCChh
Confidence 99999999999999 999987632 222333332221110 0122345678999999999999
Q ss_pred CCCCHHHHHHHHHHhHHHh
Q 040540 643 KRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 643 ~Rps~~~v~~~l~~~~~~~ 661 (669)
+||++.|+++.|+++....
T Consensus 348 ~Rpt~~ell~~L~~il~~~ 366 (370)
T 2psq_A 348 QRPTFKQLVEDLDRILTLT 366 (370)
T ss_dssp GSCCHHHHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHHh
Confidence 9999999999999987654
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=7.9e-26 Score=225.71 Aligned_cols=215 Identities=25% Similarity=0.306 Sum_probs=157.5
Q ss_pred CCCCCccceeeCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccC
Q 040540 36 YPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSF 115 (669)
Q Consensus 36 ~~~c~~~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 115 (669)
.+.|.|.|+.|... ..++.+++++++++. +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|++....
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 36899999988653 356789999999984 565543 68999999999999877778999999999999999998666
Q ss_pred CccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCC
Q 040540 116 PSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQ 195 (669)
Q Consensus 116 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~ 195 (669)
+..|.++++|++|+|++|++++..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 66778899999999999999876666777888888888888887777777777777777777777777766666677777
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCc
Q 040540 196 NLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNN 255 (669)
Q Consensus 196 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~ 255 (669)
+|++|++++|.+++..+..+.++++|++|++++|.++ .+|...+..+++|++|++++|.
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCC
Confidence 7777777777777655555555555555555555554 2333222234444444444443
No 90
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=99.94 E-value=1.6e-27 Score=238.43 Aligned_cols=193 Identities=23% Similarity=0.341 Sum_probs=148.8
Q ss_pred ccCchhhhhhccccccccceeccccccc--cccceeeccCCCCChHHhhhcCCC-ccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNY-FLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~-~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+..|+..+..++|||++++++++... ...++||||+++|+|.++++.... .+++..+..++.++++|++|||..
T Consensus 52 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~- 130 (271)
T 3kmu_A 52 RDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTL- 130 (271)
T ss_dssp HHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC-
Confidence 4577899999999999999999998876 677999999999999999986443 589999999999999999999954
Q ss_pred CCCCeeecCCCCcc--------------------cccccccccccCccccccCCCcC---ccccchhhHHHHHHHHhCCC
Q 040540 524 SSAPIIHCEGEDSV--------------------TQTTTMATIGYMAPEYGSEGIVS---AKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 524 ~~~~i~h~d~~~~~--------------------~~~~~~gt~~y~aPE~~~~~~~~---~~~Dv~s~Gvil~el~tg~~ 580 (669)
.++++|+|+|+.. ......||+.|+|||.+.+..++ .++|||||||++|||+||+.
T Consensus 131 -~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~ 209 (271)
T 3kmu_A 131 -EPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREV 209 (271)
T ss_dssp -SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSCTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSC
T ss_pred -CCceecCCCccceEEEcCCcceeEEeccceeeecccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCC
Confidence 2349999999541 11233589999999998775544 48999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
||....... ............ .+ +...+..+.+++.+||+.||++|||+.|+++.|+++.+
T Consensus 210 p~~~~~~~~-~~~~~~~~~~~~--------~~---------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 210 PFADLSNME-IGMKVALEGLRP--------TI---------PPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp TTTTSCHHH-HHHHHHHSCCCC--------CC---------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred CccccChHH-HHHHHHhcCCCC--------CC---------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 997532111 011111111111 01 11233457899999999999999999999999998864
No 91
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=99.94 E-value=2.3e-27 Score=243.64 Aligned_cols=193 Identities=25% Similarity=0.395 Sum_probs=153.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.++++.....+++..+..++.++++||+|||. .
T Consensus 95 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~----~ 170 (325)
T 3kul_A 95 RDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSD----L 170 (325)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 456789999999999999999999999899999999999999999998766679999999999999999999995 4
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+|+|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||++
T Consensus 171 ~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~ 250 (325)
T 3kul_A 171 GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAY 250 (325)
T ss_dssp TEECSCCSGGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTT
T ss_pred CeeCCCCCcceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcC
Confidence 79999999531 0011125668999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||.... ...+...+...... +.+..++..+.+++.+||..||++|||+.||++.|+++
T Consensus 251 g~~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l 311 (325)
T 3kul_A 251 GERPYWNMT--NRDVISSVEEGYRL-----------------PAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDAL 311 (325)
T ss_dssp SCCTTTTSC--HHHHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCcccCC--HHHHHHHHHcCCCC-----------------CCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 999986532 11222222221111 01123345678999999999999999999999999998
Q ss_pred HHHhh
Q 040540 658 KVKFL 662 (669)
Q Consensus 658 ~~~~~ 662 (669)
.....
T Consensus 312 ~~~~~ 316 (325)
T 3kul_A 312 IRSPE 316 (325)
T ss_dssp HHSCC
T ss_pred HhCcc
Confidence 76643
No 92
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=99.94 E-value=1.2e-27 Score=250.17 Aligned_cols=191 Identities=24% Similarity=0.412 Sum_probs=150.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||+++++++|......++||||+++|+|.++++..+..+++.++..|+.++++||+|||..
T Consensus 91 ~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---- 166 (373)
T 2qol_A 91 RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM---- 166 (373)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 4577899999999999999999999998899999999999999999987666799999999999999999999954
Q ss_pred CeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+|+|||+|+... .....+|..|+|||++.+..++.++|||||||++|||++
T Consensus 167 ~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~ 246 (373)
T 2qol_A 167 GYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSY 246 (373)
T ss_dssp TCCCSCCCGGGEEECTTCCEEECCC----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred CeeCCCCCcceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhC
Confidence 799999995410 001124668999999988889999999999999999998
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||.... ...+...+..... .+.+..++..+.+++.+||+.||.+||+|.+|+++|+++
T Consensus 247 g~~P~~~~~--~~~~~~~i~~~~~-----------------~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~ 307 (373)
T 2qol_A 247 GERPYWEMS--NQDVIKAVDEGYR-----------------LPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKL 307 (373)
T ss_dssp C-CTTTTCC--HHHHHHHHHTTEE-----------------CCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCCC--HHHHHHHHHcCCC-----------------CCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHH
Confidence 999997532 1122222221110 001123345678999999999999999999999999998
Q ss_pred HHH
Q 040540 658 KVK 660 (669)
Q Consensus 658 ~~~ 660 (669)
...
T Consensus 308 ~~~ 310 (373)
T 2qol_A 308 IRN 310 (373)
T ss_dssp HHC
T ss_pred HhC
Confidence 754
No 93
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=99.94 E-value=4.3e-27 Score=239.66 Aligned_cols=194 Identities=23% Similarity=0.353 Sum_probs=149.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCC--ccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNY--FLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~--~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++..... .+++..+..++.++++|++|||..
T Consensus 79 ~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-- 156 (309)
T 3p86_A 79 NEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR-- 156 (309)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC--
Confidence 3567899999999999999999999998899999999999999999986432 389999999999999999999954
Q ss_pred CCCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 525 SAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 525 ~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.++++|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+
T Consensus 157 ~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~ 236 (309)
T 3p86_A 157 NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQ 236 (309)
T ss_dssp SSCCCCTTCCGGGEEECTTCCEEECCCC-----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCC
T ss_pred CCCEECCCCChhhEEEeCCCcEEECCCCCCccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCC
Confidence 2349999999541 012235899999999999988999999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||..... ......+...... .. .+......+.+++.+||+.||.+|||+.++++.|+.+..
T Consensus 237 ~Pf~~~~~--~~~~~~~~~~~~~-------~~---------~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~ 298 (309)
T 3p86_A 237 QPWGNLNP--AQVVAAVGFKCKR-------LE---------IPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIK 298 (309)
T ss_dssp CTTTTSCH--HHHHHHHHHSCCC-------CC---------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC
T ss_pred CCCCCCCH--HHHHHHHHhcCCC-------CC---------CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 99975321 1122222111100 00 011233457899999999999999999999999998864
Q ss_pred H
Q 040540 660 K 660 (669)
Q Consensus 660 ~ 660 (669)
.
T Consensus 299 ~ 299 (309)
T 3p86_A 299 S 299 (309)
T ss_dssp -
T ss_pred h
Confidence 4
No 94
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=99.94 E-value=4.7e-27 Score=239.23 Aligned_cols=196 Identities=22% Similarity=0.357 Sum_probs=151.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|+|++++++++. .+..++||||+++|+|.+++......+++.++..|+.++++||+|||..
T Consensus 77 ~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---- 151 (307)
T 3lb7_A 77 QAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAK---- 151 (307)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEEecCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 45678999999999999999999875 4557899999999999999987667799999999999999999999954
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCcccccc---CCCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+|+|+|+|+.. ......||+.|+|||++. ...++.++|||||||++|||+
T Consensus 152 ~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~ell 231 (307)
T 3lb7_A 152 NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELM 231 (307)
T ss_dssp TCCCSCCCSSSEEECTTSCEEECCCCSSCC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CEeeCCCChhhEEEcCCCCEEEccCCCceecccccccccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHH
Confidence 79999999541 011225899999999875 566889999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCC-CccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPH-RLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
||+.||..... ...+...+...... ..... ...++..+.+++.+||+.+|++||++.||++.|+
T Consensus 232 tg~~Pf~~~~~-~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~ 296 (307)
T 3lb7_A 232 TGELPYSHINN-RDQIIFMVGRGYASPDLSKL--------------YKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 296 (307)
T ss_dssp HSSCTTTTCCC-HHHHHHHHHHTCCCCCSTTS--------------CSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHH
T ss_pred hCCCCCccCCc-HHHHHHHHhcCCCCcchhhh--------------hcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHH
Confidence 99999976322 11122222222111 11110 1123356789999999999999999999999999
Q ss_pred HhHHHhh
Q 040540 656 KIKVKFL 662 (669)
Q Consensus 656 ~~~~~~~ 662 (669)
.+...++
T Consensus 297 ~l~~~~p 303 (307)
T 3lb7_A 297 LLQHSLP 303 (307)
T ss_dssp HHHTTCC
T ss_pred HHHhhcc
Confidence 9876653
No 95
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.93 E-value=1e-26 Score=232.24 Aligned_cols=191 Identities=24% Similarity=0.352 Sum_probs=153.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+.+++|||++++++++......++||||+++|+|.+++......+++..+..++.++++|++|||..
T Consensus 50 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---- 125 (269)
T 4hcu_A 50 EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---- 125 (269)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhC----
Confidence 3567899999999999999999999998889999999999999999987667789999999999999999999954
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|+|+|+.. ......||+.|+|||...+..++.++||||+|+++|||+| |+
T Consensus 126 ~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~ 205 (269)
T 4hcu_A 126 CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGK 205 (269)
T ss_dssp TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CeecCCcchheEEEcCCCCEEeccccccccccccccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCC
Confidence 79999999541 0111235678999999988889999999999999999999 99
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||.... ...+...+........ +......+.+++.+||+.||++||++.|+++.|+++.+
T Consensus 206 ~p~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~ 266 (269)
T 4hcu_A 206 IPYENRS--NSEVVEDISTGFRLYK-----------------PRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 266 (269)
T ss_dssp CTTTTCC--HHHHHHHHHTTCCCCC-----------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCCC--HHHHHHHHhcCccCCC-----------------CCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHH
Confidence 9987532 1122222222211100 11123457899999999999999999999999999876
Q ss_pred H
Q 040540 660 K 660 (669)
Q Consensus 660 ~ 660 (669)
+
T Consensus 267 ~ 267 (269)
T 4hcu_A 267 S 267 (269)
T ss_dssp C
T ss_pred c
Confidence 4
No 96
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=99.93 E-value=9e-28 Score=243.41 Aligned_cols=205 Identities=23% Similarity=0.390 Sum_probs=150.6
Q ss_pred ccCchhhhhhccccccccceecccccc--ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN--PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+.++..++|||++++++++.. ....++||||+++|+|.+++......+++..+..++.++++|++|||.
T Consensus 56 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~--- 132 (295)
T 3ugc_A 56 RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT--- 132 (295)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhc---
Confidence 456789999999999999999998855 345789999999999999998766679999999999999999999995
Q ss_pred CCCeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+|+... .....|+..|+|||.+.+..++.++|||||||++|||+
T Consensus 133 -~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~ 211 (295)
T 3ugc_A 133 -KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELF 211 (295)
T ss_dssp -TTCCCSCCSGGGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred -CCcccCCCCHhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHH
Confidence 4799999995410 01123667799999998888999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCcccccccc---ccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTN---LVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
||..|+..... .+................ ......+.+.+..++..+.+++.+||+.||++|||+.|+++.
T Consensus 212 ~g~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~ 285 (295)
T 3ugc_A 212 TYIEKSKSPPA------EFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALR 285 (295)
T ss_dssp HTTCTTCSHHH------HHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred hcccccCCChH------HHHhhhcCccccchhHHHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence 99998764210 000000000000000000 000000111123445678899999999999999999999999
Q ss_pred HHHhHHHh
Q 040540 654 LKKIKVKF 661 (669)
Q Consensus 654 l~~~~~~~ 661 (669)
|+++.+.+
T Consensus 286 L~~l~~~l 293 (295)
T 3ugc_A 286 VDQIRDNM 293 (295)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhc
Confidence 99998765
No 97
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=99.93 E-value=2e-26 Score=234.71 Aligned_cols=196 Identities=24% Similarity=0.378 Sum_probs=149.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCC--ccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNY--FLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~--~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+..+.+++|||++++++++.. ..++||||+++|+|.+++..... .+++.....++.++++|++|||..+
T Consensus 46 ~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~- 122 (307)
T 2eva_A 46 KAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQ- 122 (307)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCS-
T ss_pred HHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCC-
Confidence 456789999999999999999998874 47899999999999999986432 4688889999999999999999631
Q ss_pred CCCeeecCCCCcc-----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 525 SAPIIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 525 ~~~i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
..+++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.|
T Consensus 123 ~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p 202 (307)
T 2eva_A 123 PKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKP 202 (307)
T ss_dssp SSCCCCCCCSGGGEEEETTTTEEEECCCCC------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCT
T ss_pred CCCeecCCCChhHEEEeCCCCEEEEcccccccccccccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 2579999999541 01122489999999999988899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHHHh
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~~~ 661 (669)
|.........+...+....... . ....+..+.+++.+||+.||++|||+.|+++.|+.+.+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~--------~---------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 265 (307)
T 2eva_A 203 FDEIGGPAFRIMWAVHNGTRPP--------L---------IKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYF 265 (307)
T ss_dssp TTTTCSSHHHHHHHHHTTCCCC--------C---------BTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGC
T ss_pred chhhCccHHHHHHHHhcCCCCC--------c---------ccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhc
Confidence 9764322211111111111110 0 1122345789999999999999999999999999987665
Q ss_pred h
Q 040540 662 L 662 (669)
Q Consensus 662 ~ 662 (669)
.
T Consensus 266 ~ 266 (307)
T 2eva_A 266 P 266 (307)
T ss_dssp C
T ss_pred c
Confidence 3
No 98
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-26 Score=237.70 Aligned_cols=246 Identities=24% Similarity=0.224 Sum_probs=142.8
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
+++..+++.+.+...+...+..+++|++|+|++|.+.+..|..|..+++|++|+|++|++.+..| +..+++|++|+|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 45666777777765555555666777888888888777666777777788888888777765443 7777777777777
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCC
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLI 211 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 211 (669)
+|++++.. ..++|++|++++|.+++..+.. +++|++|++++|.+++..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---------------------------~~~L~~L~l~~N~l~~~~ 136 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---------------------------GQGKKNIYLANNKITMLR 136 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---------------------------CSSCEEEECCSSCCCSGG
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---------------------------cCCCCEEECCCCCCCCcc
Confidence 77776422 2255555555555554433222 334455555555555444
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCC
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNL 291 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 291 (669)
|..+..+++|++|++++|.+++..+..+...+++|++|++++|.+.+.. ....+++|+.|++++|.+.+..+ .+..+
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l 213 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSA 213 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGG
T ss_pred chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhccc
Confidence 4444445555555555555544334444334555555555555554431 12235566666666666654333 35566
Q ss_pred CCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCc-cccchh
Q 040540 292 RHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLG-GILPQL 343 (669)
Q Consensus 292 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~ 343 (669)
++|+.|++++|+++..+ ..+..+++|+.|++++|++. +..+..
T Consensus 214 ~~L~~L~L~~N~l~~l~---------~~~~~l~~L~~L~l~~N~~~~~~~~~~ 257 (317)
T 3o53_A 214 AGVTWISLRNNKLVLIE---------KALRFSQNLEHFDLRGNGFHCGTLRDF 257 (317)
T ss_dssp TTCSEEECTTSCCCEEC---------TTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred CcccEEECcCCcccchh---------hHhhcCCCCCEEEccCCCccCcCHHHH
Confidence 66666666666665432 12345566777777777766 333333
No 99
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=99.93 E-value=4.5e-26 Score=232.32 Aligned_cols=201 Identities=25% Similarity=0.374 Sum_probs=155.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC--CCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH--NYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~--~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+..+..++|||++++++++......++||||+++|+|.+++... ...+++..+..++.++++||+|||..
T Consensus 75 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-- 152 (307)
T 2nru_A 75 QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN-- 152 (307)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC--
Confidence 35678999999999999999999999988999999999999999999742 34689999999999999999999954
Q ss_pred CCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 525 SAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 525 ~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
+++|+|+++.. ......||+.|+|||...+ .++.++|||||||++|||+|
T Consensus 153 --~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~ 229 (307)
T 2nru_A 153 --HHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIIT 229 (307)
T ss_dssp --TEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHH
T ss_pred --CeecCCCCHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHH
Confidence 79999998531 0112358999999998765 48899999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhC--CCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESL--PHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
|+.||....... .+..+..... ...+.+.+++.+.. .+......+.+++.+||..||.+|||+.+|++.|+
T Consensus 230 g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~ 302 (307)
T 2nru_A 230 GLPAVDEHREPQ-LLLDIKEEIEDEEKTIEDYIDKKMND------ADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQ 302 (307)
T ss_dssp CCCSBCTTBSSS-BTTHHHHHHHTTSCCHHHHSCSSCSC------CCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHH
T ss_pred CCCCcccCcchH-HHHHHHHHhhhhhhhhhhhccccccc------cchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence 999997643322 1222222111 11222333333221 24456778899999999999999999999999999
Q ss_pred HhHH
Q 040540 656 KIKV 659 (669)
Q Consensus 656 ~~~~ 659 (669)
++..
T Consensus 303 ~l~~ 306 (307)
T 2nru_A 303 EMTA 306 (307)
T ss_dssp HHC-
T ss_pred HHhc
Confidence 8864
No 100
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=99.93 E-value=5.7e-26 Score=230.83 Aligned_cols=198 Identities=24% Similarity=0.310 Sum_probs=145.6
Q ss_pred chhhhhhcc--ccccccceecccccc----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 450 DSECEVLRN--VRHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 450 ~~e~~~l~~--l~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
..|.+++.. ++|||++++++++.. ....++||||+++|+|.++++. ..+++..+..|+.++++|++|||...
T Consensus 48 ~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~~i~~~l~~lH~~~ 125 (301)
T 3q4u_A 48 FRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL--TTLDTVSCLRIVLSIASGLAHLHIEI 125 (301)
T ss_dssp HHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEECCCTTCBHHHHHTT--CCBCHHHHHHHHHHHHHHHHHHHSCB
T ss_pred HHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehhhccCCCHHHHHhh--cccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555544 789999999998654 3457899999999999999964 45899999999999999999999321
Q ss_pred ----CCCCeeecCCCCcc-----------------------------cccccccccccCccccccCC------CcCcccc
Q 040540 524 ----SSAPIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEG------IVSAKCD 564 (669)
Q Consensus 524 ----~~~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~------~~~~~~D 564 (669)
...+++|||+|+.. ......||+.|+|||++.+. .++.++|
T Consensus 126 ~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~D 205 (301)
T 3q4u_A 126 FGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVD 205 (301)
T ss_dssp CSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHH
T ss_pred hhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhh
Confidence 14689999999531 01112689999999998776 4567999
Q ss_pred chhhHHHHHHHHhC----------CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHh
Q 040540 565 VYSYGVLLMETFTR----------KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLAL 634 (669)
Q Consensus 565 v~s~Gvil~el~tg----------~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 634 (669)
||||||++|||+|| +.||....................... +.+... ......+..+.+++.
T Consensus 206 vwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~l~~li~ 277 (301)
T 3q4u_A 206 IWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQR----PNIPNR----WFSDPTLTSLAKLMK 277 (301)
T ss_dssp HHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCC----CCCCGG----GGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCCC----CCCChh----hccCccHHHHHHHHH
Confidence 99999999999999 888866544443333332222111111 111110 113456778899999
Q ss_pred hcccCCCCCCCCHHHHHHHHHHh
Q 040540 635 DCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 635 ~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
+||+.||++|||+.||++.|+++
T Consensus 278 ~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 278 ECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp HHCCSSGGGSCCHHHHHHHHHHH
T ss_pred HHhhcChhhCCCHHHHHHHHhcc
Confidence 99999999999999999999876
No 101
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=99.93 E-value=1.3e-26 Score=238.46 Aligned_cols=189 Identities=19% Similarity=0.320 Sum_probs=150.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||+++++++|.... .++++||+++|+|.+++......+++..+..++.++++||+|||..
T Consensus 62 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---- 136 (327)
T 3poz_A 62 KEILDEAYVMASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---- 136 (327)
T ss_dssp HHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC----
Confidence 45678999999999999999999998654 6789999999999999987777799999999999999999999954
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
+|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+| |
T Consensus 137 ~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g 216 (327)
T 3poz_A 137 RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 216 (327)
T ss_dssp TCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred CeeCCCCChheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcC
Confidence 79999999541 0111236779999999999899999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||.... ...+...+....... .+..+...+.+++.+||+.||.+||+|.|+++.|+++.
T Consensus 217 ~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~ 277 (327)
T 3poz_A 217 SKPYDGIP--ASEISSILEKGERLP-----------------QPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMA 277 (327)
T ss_dssp CCTTTTCC--GGGHHHHHHTTCCCC-----------------CCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHH
T ss_pred CCCccCCC--HHHHHHHHHcCCCCC-----------------CCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 99997632 222333333221110 01123346789999999999999999999999999876
Q ss_pred H
Q 040540 659 V 659 (669)
Q Consensus 659 ~ 659 (669)
.
T Consensus 278 ~ 278 (327)
T 3poz_A 278 R 278 (327)
T ss_dssp T
T ss_pred h
Confidence 4
No 102
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.5e-26 Score=235.03 Aligned_cols=236 Identities=20% Similarity=0.211 Sum_probs=201.2
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|.+.+..|..|..+++|++|+|++|.+.+..| +..+++|++|++++|++.+.. ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEEC
Confidence 478999999999998888889999999999999999987665 899999999999999998432 3489999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCcccc-CCCCCCEEEccCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIG-SLQNLKNLDLADNKLSG 209 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~N~l~~ 209 (669)
++|++++..+.. +++|+.|++++|.+++..+..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+++
T Consensus 107 ~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 999999765543 67899999999999998888999999999999999999988777764 78999999999999987
Q ss_pred CCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCcc-ccCcccc
Q 040540 210 LIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFS-GHIPNTF 288 (669)
Q Consensus 210 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~-~~~p~~~ 288 (669)
. | ....+++|++|++++|.++ .+|..+. .+++|++|++++|++. .+|..+..+++|+.|++++|.+. +.+|..+
T Consensus 184 ~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 184 V-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp E-E-CCCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred c-c-cccccccCCEEECCCCcCC-cchhhhc-ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 6 3 3345889999999999997 4565555 6889999999999887 46777888889999999999887 6677777
Q ss_pred CCCCCCCEEEccC
Q 040540 289 GNLRHLSVLNVMM 301 (669)
Q Consensus 289 ~~l~~L~~L~l~~ 301 (669)
..+++|+.+++..
T Consensus 259 ~~~~~L~~l~l~~ 271 (317)
T 3o53_A 259 SKNQRVQTVAKQT 271 (317)
T ss_dssp HTCHHHHHHHHHH
T ss_pred hccccceEEECCC
Confidence 7788888777763
No 103
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.9e-25 Score=244.05 Aligned_cols=235 Identities=26% Similarity=0.303 Sum_probs=156.3
Q ss_pred CCCCCCCCCcccee------eCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEE
Q 040540 32 WSISYPICSWAGIS------CGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMS 105 (669)
Q Consensus 32 w~~~~~~c~~~g~~------c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 105 (669)
|....++|.|.|.. |.+....++.|++++++++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+
T Consensus 15 W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~ 87 (622)
T 3g06_A 15 WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLE 87 (622)
T ss_dssp HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEE
Confidence 87777889986532 2112245889999999998 6676665 79999999999998 4555 578999999
Q ss_pred ccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcc
Q 040540 106 LAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQG 185 (669)
Q Consensus 106 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~ 185 (669)
|++|+++ .+|. .+++|++|+|++|++++ +|. .+++|+.|++++|.+++ +|.. +++|++|++++|.+++
T Consensus 88 Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 88 VSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS 155 (622)
T ss_dssp ECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred cCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC
Confidence 9999988 4665 67899999999999885 444 56778888888887764 4443 3677777777777764
Q ss_pred cCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCcccc
Q 040540 186 QIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSIT 265 (669)
Q Consensus 186 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~ 265 (669)
+|. .+.+|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.+.. +|..
T Consensus 156 -l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~-l~~~-- 219 (622)
T 3g06_A 156 -LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTS-LPAL-- 219 (622)
T ss_dssp -CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS-CCCC--
T ss_pred -cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCcccc-cCCC--
Confidence 343 23567777777777775 34 345667777777776653 443 23566666666666553 3321
Q ss_pred CCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCcccc
Q 040540 266 NATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTT 306 (669)
Q Consensus 266 ~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 306 (669)
+++|+.|++++|.+++ +| ..+++|+.|++++|+++.
T Consensus 220 -~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~ 255 (622)
T 3g06_A 220 -PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS 255 (622)
T ss_dssp -CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC
T ss_pred -CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc
Confidence 2456666666665553 33 233455555555555543
No 104
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=99.93 E-value=1.8e-26 Score=247.72 Aligned_cols=192 Identities=26% Similarity=0.366 Sum_probs=152.4
Q ss_pred cccCchhhhhhccccccccceecccccccc-ccceeeccCCCCChHHhhhcCCC-ccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPD-FKALVLEFMPNGSLEKWLYSHNY-FLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-~~~lv~ey~~~g~L~~~l~~~~~-~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+.+..|+.++.+++|||+++++++|.... ..++|||||++|+|.++++..+. .+++..+..++.|+++|++|||.
T Consensus 230 ~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~-- 307 (450)
T 1k9a_A 230 AQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG-- 307 (450)
T ss_dssp SHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh--
Confidence 346778999999999999999999986654 67999999999999999986433 47899999999999999999995
Q ss_pred CCCCeeecCCCCcc----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCC
Q 040540 524 SSAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKR 580 (669)
Q Consensus 524 ~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~ 580 (669)
.+++|||+|+.. ......++..|+|||++.+..++.++|||||||++|||+| |+.
T Consensus 308 --~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~ 385 (450)
T 1k9a_A 308 --NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRV 385 (450)
T ss_dssp --TTEECSCCCGGGEEECTTSCEEECCCTTCEECC------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred --CCeeCCCCCHhhEEECCCCCEEEeeCCCcccccccccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 479999999541 0111246789999999998899999999999999999999 999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
||...... .+...+...... +.+..++..+.+++.+||..||++|||+.++++.|+++...
T Consensus 386 P~~~~~~~--~~~~~i~~~~~~-----------------~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 386 PYPRIPLK--DVVPRVEKGYKM-----------------DAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp SSTTSCTT--THHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHH--HHHHHHHcCCCC-----------------CCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 99764322 233333222111 11223445678999999999999999999999999998765
No 105
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=99.93 E-value=7.9e-27 Score=243.80 Aligned_cols=198 Identities=12% Similarity=0.088 Sum_probs=150.5
Q ss_pred chhhhhhccccccccceeccccccc----cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 450 DSECEVLRNVRHRNLIKIISSCSNP----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 450 ~~e~~~l~~l~h~niv~l~~~~~~~----~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
..|+..+..++|+|++++++++... ...++||||+ +++|.+++......+++..+..|+.|+++||+|||..
T Consensus 96 ~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~--- 171 (364)
T 3op5_A 96 IQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEH--- 171 (364)
T ss_dssp HHHHHHHTTCSCCCSCCEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHhhccCCCCCeEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---
Confidence 3455667788999999999998764 4578999999 9999999987667799999999999999999999954
Q ss_pred CCeeecCCCCccc----------------------------------ccccccccccCccccccCCCcCccccchhhHHH
Q 040540 526 APIIHCEGEDSVT----------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 526 ~~i~h~d~~~~~~----------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
+|+|||+|+... .....||+.|+|||++.+..++.++|||||||+
T Consensus 172 -~iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~ 250 (364)
T 3op5_A 172 -EYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYC 250 (364)
T ss_dssp -TEECCCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHH
T ss_pred -CeEEecCCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHH
Confidence 899999985310 011238999999999998889999999999999
Q ss_pred HHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHH
Q 040540 572 LMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAA 651 (669)
Q Consensus 572 l~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~ 651 (669)
+|||+||+.||....... ....+........+...+++.+. ....+..+.+++.+||+.||.+||++.+++
T Consensus 251 l~el~~g~~Pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~li~~cl~~~p~~RP~~~~l~ 321 (364)
T 3op5_A 251 MIQWLTGHLPWEDNLKDP-KYVRDSKIRYRENIASLMDKCFP--------AANAPGEIAKYMETVKLLDYTEKPLYENLR 321 (364)
T ss_dssp HHHHHHSCCTTGGGTTCH-HHHHHHHHHHHHCHHHHHHHHSC--------TTCCCHHHHHHHHHHHTCCTTCCCCHHHHH
T ss_pred HHHHHhCCCCccccccCH-HHHHHHHHHhhhhHHHHHHHhcc--------cccCHHHHHHHHHHHhcCCCCCCCCHHHHH
Confidence 999999999997633222 22222222211111112111110 012345688999999999999999999999
Q ss_pred HHHHHhHHHh
Q 040540 652 AKLKKIKVKF 661 (669)
Q Consensus 652 ~~l~~~~~~~ 661 (669)
+.|+++....
T Consensus 322 ~~l~~~~~~~ 331 (364)
T 3op5_A 322 DILLQGLKAI 331 (364)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999987654
No 106
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=99.93 E-value=1.7e-26 Score=241.32 Aligned_cols=194 Identities=18% Similarity=0.338 Sum_probs=151.4
Q ss_pred ccCchhhhhhccccccccceecccccc-ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN-PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+.++..++|||+++++++|.. .+..++||||+++|+|.++++.....+++.+...++.|+++|++|||..
T Consensus 135 ~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~--- 211 (373)
T 3c1x_A 135 SQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK--- 211 (373)
T ss_dssp HHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHC---
Confidence 457789999999999999999998754 4577899999999999999987666789999999999999999999954
Q ss_pred CCeeecCCCCcc-----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 526 APIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 526 ~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+
T Consensus 212 -~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ell 290 (373)
T 3c1x_A 212 -KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELM 290 (373)
T ss_dssp -TCCCSCCCGGGEEECTTCCEEECCC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred -CEecCccchheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 79999999531 001123677899999998888999999999999999999
Q ss_pred h-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 577 T-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 577 t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
| |..||.... ...+...+....... . +..++..+.+++.+||+.||++||++.|+++.|+
T Consensus 291 t~~~~p~~~~~--~~~~~~~~~~~~~~~-----~------------p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~ 351 (373)
T 3c1x_A 291 TRGAPPYPDVN--TFDITVYLLQGRRLL-----Q------------PEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRIS 351 (373)
T ss_dssp TTSCCSCTTSC--SSCHHHHHHTTCCCC-----C------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred hCcCCCCCCCC--HHHHHHHHHcCCCCC-----C------------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 9 677776532 222333332221110 0 1122345789999999999999999999999999
Q ss_pred HhHHHhhh
Q 040540 656 KIKVKFLD 663 (669)
Q Consensus 656 ~~~~~~~~ 663 (669)
++...+.+
T Consensus 352 ~i~~~~~~ 359 (373)
T 3c1x_A 352 AIFSTFIG 359 (373)
T ss_dssp HHHHTCCS
T ss_pred HHHHhccc
Confidence 99877544
No 107
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=99.93 E-value=1.2e-26 Score=240.61 Aligned_cols=196 Identities=22% Similarity=0.353 Sum_probs=151.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-----------------------CccCHH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-----------------------YFLDIL 503 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-----------------------~~l~~~ 503 (669)
+.+..|+..+..++|||++++++++......++||||+++|+|.+++.... ..+++.
T Consensus 95 ~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (343)
T 1luf_A 95 ADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCA 174 (343)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEEEccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHH
Confidence 456789999999999999999999999999999999999999999997632 468899
Q ss_pred HHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccC
Q 040540 504 ERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSE 556 (669)
Q Consensus 504 ~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~ 556 (669)
++..|+.++++||+|||.. +++|+|+|+.. ......||+.|+|||++.+
T Consensus 175 ~~~~i~~qi~~~l~~LH~~----~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~ 250 (343)
T 1luf_A 175 EQLCIARQVAAGMAYLSER----KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFY 250 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHT----TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC----CeecCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhcc
Confidence 9999999999999999954 79999999541 0112247888999999988
Q ss_pred CCcCccccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 557 GIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 557 ~~~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
..++.++|||||||++|||+| |+.||.... ...+...+....... .+..++..+.+++.+
T Consensus 251 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~ 311 (343)
T 1luf_A 251 NRYTTESDVWAYGVVLWEIFSYGLQPYYGMA--HEEVIYYVRDGNILA-----------------CPENCPLELYNLMRL 311 (343)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC--HHHHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHH
T ss_pred CCcCcccccHHHHHHHHHHHhcCCCcCCCCC--hHHHHHHHhCCCcCC-----------------CCCCCCHHHHHHHHH
Confidence 889999999999999999999 999987532 111222222111100 011233467899999
Q ss_pred cccCCCCCCCCHHHHHHHHHHhHHHhhhhh
Q 040540 636 CCMESPDKRMHMTDAAAKLKKIKVKFLDDV 665 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~~l~~~~~~~~~~~ 665 (669)
||+.||++||++.+|++.|+++.++....+
T Consensus 312 ~l~~~p~~Rps~~~~~~~L~~~~~~~~~~~ 341 (343)
T 1luf_A 312 CWSKLPADRPSFCSIHRILQRMCERAEGTV 341 (343)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHTTC------
T ss_pred HcccCcccCCCHHHHHHHHHHHHhhhhhhc
Confidence 999999999999999999999987765443
No 108
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=99.93 E-value=3.4e-26 Score=230.83 Aligned_cols=191 Identities=25% Similarity=0.454 Sum_probs=147.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|+|++++++++.... ++||||+++|+|.+++.+....+++..+..++.++++|++|||.. .+
T Consensus 68 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~--~~ 143 (287)
T 4f0f_A 68 QEFQREVFIMSNLNHPNIVKLYGLMHNPP--RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQ--NP 143 (287)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEETTTT--EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTS--SS
T ss_pred HHHHHHHHHHHhCCCCCchhhheeecCCC--eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhC--CC
Confidence 45678999999999999999999886554 699999999999999987777899999999999999999999954 23
Q ss_pred CeeecCCCCccc---------------------------ccccccccccCcccccc--CCCcCccccchhhHHHHHHHHh
Q 040540 527 PIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGS--EGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~--~~~~~~~~Dv~s~Gvil~el~t 577 (669)
+++|+|+|+... .....||+.|+|||++. ...++.++||||+||++|||++
T Consensus 144 ~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~ 223 (287)
T 4f0f_A 144 PIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILT 223 (287)
T ss_dssp CCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHH
T ss_pred CeecCCCCcceEEEeccCCCCceeEEeCCCCccccccccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHc
Confidence 499999985310 11234899999999984 4558899999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||.................... +.+ +...+..+.+++.+||+.||++|||+.|+++.|+++
T Consensus 224 g~~pf~~~~~~~~~~~~~~~~~~~~-------~~~---------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 224 GEGPFDEYSYGKIKFINMIREEGLR-------PTI---------PEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp SSCTTTTCCCCHHHHHHHHHHSCCC-------CCC---------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred CCCCCccccccHHHHHHHHhccCCC-------CCC---------CcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 9999976433332222222221100 001 112345678999999999999999999999999864
No 109
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.3e-26 Score=242.02 Aligned_cols=190 Identities=22% Similarity=0.361 Sum_probs=151.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC------CccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN------YFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~------~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|+.++..++|||++++++++......++||||+++|+|.++++..+ ..+++.++..++.++++||+|||.
T Consensus 120 ~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~ 199 (367)
T 3l9p_A 120 DFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE 199 (367)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHh
Confidence 46678999999999999999999998888999999999999999997532 358899999999999999999995
Q ss_pred CCCCCCeeecCCCCcc------------------------------cccccccccccCccccccCCCcCccccchhhHHH
Q 040540 522 GHSSAPIIHCEGEDSV------------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
. +|+|||+|+.. ......||+.|+|||++.+..++.++|||||||+
T Consensus 200 ~----~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~i 275 (367)
T 3l9p_A 200 N----HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL 275 (367)
T ss_dssp T----TCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHH
T ss_pred C----CeeCCCCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHH
Confidence 4 79999999531 0111246889999999988889999999999999
Q ss_pred HHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 572 LMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 572 l~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
+|||+| |+.||.... ...+...+........ +..++..+.+++.+||+.||.+||++.+|
T Consensus 276 l~ellt~g~~pf~~~~--~~~~~~~i~~~~~~~~-----------------~~~~~~~l~~li~~~l~~dP~~Rps~~ei 336 (367)
T 3l9p_A 276 LWEIFSLGYMPYPSKS--NQEVLEFVTSGGRMDP-----------------PKNCPGPVYRIMTQCWQHQPEDRPNFAII 336 (367)
T ss_dssp HHHHHTTSCCSSTTCC--HHHHHHHHHTTCCCCC-----------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHHHHhCCCCCCCCCC--HHHHHHHHHcCCCCCC-----------------CccCCHHHHHHHHHHcCCCHhHCcCHHHH
Confidence 999998 999986532 2222332222211100 11223457899999999999999999999
Q ss_pred HHHHHHhHHH
Q 040540 651 AAKLKKIKVK 660 (669)
Q Consensus 651 ~~~l~~~~~~ 660 (669)
++.|+.+.+.
T Consensus 337 l~~l~~~~~~ 346 (367)
T 3l9p_A 337 LERIEYCTQD 346 (367)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhC
Confidence 9999988654
No 110
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.93 E-value=2e-26 Score=256.02 Aligned_cols=196 Identities=17% Similarity=0.329 Sum_probs=155.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||+++++++|.. +..++|||||++|+|.+++......+++..+..|+.++++||+|||..
T Consensus 381 ~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---- 455 (613)
T 2ozo_A 381 EEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---- 455 (613)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 457789999999999999999999876 557899999999999999987667799999999999999999999954
Q ss_pred CeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+|+|||+|+... .....+|+.|+|||++....++.++|||||||++|||+|
T Consensus 456 ~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~ 535 (613)
T 2ozo_A 456 NFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSY 535 (613)
T ss_dssp TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred CEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHC
Confidence 799999995310 001124578999999988889999999999999999998
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||..... ..+...+...... +.+..++..+.+++.+||..||++||+|.+|++.|+.+
T Consensus 536 G~~Pf~~~~~--~~~~~~i~~~~~~-----------------~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 596 (613)
T 2ozo_A 536 GQKPYKKMKG--PEVMAFIEQGKRM-----------------ECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 596 (613)
T ss_dssp SCCTTTTCCS--HHHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCH--HHHHHHHHcCCCC-----------------CCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 9999976432 2233333322111 11223445688999999999999999999999999998
Q ss_pred HHHhhhhhh
Q 040540 658 KVKFLDDVA 666 (669)
Q Consensus 658 ~~~~~~~~~ 666 (669)
......+.+
T Consensus 597 ~~~~~~~~~ 605 (613)
T 2ozo_A 597 YYSLASKVE 605 (613)
T ss_dssp HHHHSCSCC
T ss_pred HHHhccccC
Confidence 777655443
No 111
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=99.93 E-value=1.8e-26 Score=230.28 Aligned_cols=191 Identities=24% Similarity=0.321 Sum_probs=150.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++......++||||+++++|.+++...+..+++..+..++.++++|++|||..
T Consensus 48 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---- 123 (268)
T 3sxs_A 48 DEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESH---- 123 (268)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 3467899999999999999999999988889999999999999999987666789999999999999999999954
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|+|+|+.. ......||+.|+|||...+..++.++||||+|+++|||+| |+
T Consensus 124 ~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~ 203 (268)
T 3sxs_A 124 QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGK 203 (268)
T ss_dssp TEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTC
T ss_pred CeecCCcCcceEEECCCCCEEEccCccceecchhhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCC
Confidence 79999999541 0111235667999999988889999999999999999999 99
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||..... ......+...... .. +...+..+.+++.+||+.||++|||+.|+++.|+.+++
T Consensus 204 ~p~~~~~~--~~~~~~~~~~~~~-----~~------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (268)
T 3sxs_A 204 MPYDLYTN--SEVVLKVSQGHRL-----YR------------PHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLRE 264 (268)
T ss_dssp CTTTTSCH--HHHHHHHHTTCCC-----CC------------CTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC
T ss_pred CCccccCh--HHHHHHHHcCCCC-----CC------------CCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhh
Confidence 99865321 1111111111110 00 11123457899999999999999999999999999876
Q ss_pred H
Q 040540 660 K 660 (669)
Q Consensus 660 ~ 660 (669)
+
T Consensus 265 ~ 265 (268)
T 3sxs_A 265 K 265 (268)
T ss_dssp -
T ss_pred c
Confidence 5
No 112
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=99.93 E-value=8.8e-27 Score=236.12 Aligned_cols=182 Identities=20% Similarity=0.241 Sum_probs=143.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.++|||++++++++...+..++||||+++|+|.+++.+. .+++.....++.++++|++|||.. +
T Consensus 63 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~----~ 136 (297)
T 3fxz_A 63 LIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLHSN----Q 136 (297)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECCCCCCHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHhC----C
Confidence 4567899999999999999999999888899999999999999999763 488999999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.||
T Consensus 137 i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf 216 (297)
T 3fxz_A 137 VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPY 216 (297)
T ss_dssp EECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred ceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999531 112235899999999999989999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
....... .+........+. . ..+......+.+++.+||+.||++|||+.|+++
T Consensus 217 ~~~~~~~-~~~~~~~~~~~~-~---------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 217 LNENPLR-ALYLIATNGTPE-L---------------QNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp TTSCHHH-HHHHHHHHCSCC-C---------------SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCHHH-HHHHHHhCCCCC-C---------------CCccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 6532111 111111111110 0 012233456789999999999999999999976
No 113
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=99.93 E-value=2.2e-26 Score=235.72 Aligned_cols=185 Identities=18% Similarity=0.222 Sum_probs=146.9
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++......++||||+++|+|.+++......+++.+...++.++++|++|||. .+
T Consensus 47 ~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~----~g 122 (321)
T 1tki_A 47 LVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHS----HN 122 (321)
T ss_dssp HHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 45679999999999999999999998899999999999999999998766679999999999999999999995 48
Q ss_pred eeecCCCCccc--------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
++|||+|+... .....||+.|+|||++.+..++.++||||+||++|||++|+.|
T Consensus 123 ivH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~p 202 (321)
T 1tki_A 123 IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINP 202 (321)
T ss_dssp EECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCT
T ss_pred CCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 99999985310 1122489999999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|.... ...+...+...... . . ...+...+..+.+++.+|+..||.+|||+.|+++
T Consensus 203 f~~~~--~~~~~~~i~~~~~~-~--------~-----~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 203 FLAET--NQQIIENIMNAEYT-F--------D-----EEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp TCCSS--HHHHHHHHHHTCCC-C--------C-----HHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CcCCC--HHHHHHHHHcCCCC-C--------C-----hhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 97532 11121111111100 0 0 0012234556889999999999999999999987
No 114
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=99.93 E-value=3e-26 Score=230.39 Aligned_cols=191 Identities=20% Similarity=0.310 Sum_probs=149.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++. .+..++||||+++|+|.+++......+++..+..++.++++|++|||..
T Consensus 61 ~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---- 135 (281)
T 1mp8_A 61 EKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK---- 135 (281)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCccceEEEEEc-cCccEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 35667899999999999999999874 4567899999999999999987666799999999999999999999954
Q ss_pred CeeecCCCCccc--------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|+|+|+... .....+|+.|+|||++....++.++|||||||++|||++ |+
T Consensus 136 ~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~ 215 (281)
T 1mp8_A 136 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 215 (281)
T ss_dssp TCCCSCCSGGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSC
T ss_pred CeecccccHHHEEECCCCCEEECccccccccCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCC
Confidence 799999995410 111235678999999988889999999999999999997 99
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||..... ..+...+....... .+...+..+.+++.+||+.||++|||+.|+++.|+++.+
T Consensus 216 ~pf~~~~~--~~~~~~i~~~~~~~-----------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 276 (281)
T 1mp8_A 216 KPFQGVKN--NDVIGRIENGERLP-----------------MPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE 276 (281)
T ss_dssp CTTTTCCG--GGHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCcCCH--HHHHHHHHcCCCCC-----------------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 99876322 22333222211110 011234567899999999999999999999999999876
Q ss_pred Hh
Q 040540 660 KF 661 (669)
Q Consensus 660 ~~ 661 (669)
..
T Consensus 277 ~~ 278 (281)
T 1mp8_A 277 EE 278 (281)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 115
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=8.4e-25 Score=219.15 Aligned_cols=221 Identities=22% Similarity=0.186 Sum_probs=149.3
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCc
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNF 135 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 135 (669)
.+.++.++. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++.+..+..|.++++|++|+|++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 334444443 3444432 4688888888888877777888888888888888888877777888888888888888888
Q ss_pred cccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCccc-CCccccCCCCCCEEEccCCCCCCCCCcc
Q 040540 136 TGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQ-IPTEIGSLQNLKNLDLADNKLSGLIPPT 214 (669)
Q Consensus 136 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 214 (669)
++..+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+. +|..++.+++|++|++++|.+++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 877777788888888888888877776666677777777777777777653 5777777777777777777777666666
Q ss_pred ccCCCCCc----EEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCcc
Q 040540 215 IFNISTMR----ILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFS 281 (669)
Q Consensus 215 ~~~l~~L~----~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 281 (669)
+..+.+|+ .|++++|.+++ ++...+ ...+|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNF-IQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCE-ECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred hhhhhhccccceeeecCCCcccc-cCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 55555554 56666666552 333322 1234555555555555444444444555555555555444
No 116
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=99.93 E-value=2.3e-26 Score=249.61 Aligned_cols=190 Identities=22% Similarity=0.336 Sum_probs=152.5
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+.|..|+.++..++|||+++++++|......++|||||++|+|.++++.. ...+++..+..|+.|+++||+|||.
T Consensus 260 ~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~--- 336 (495)
T 1opk_A 260 VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK--- 336 (495)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHh---
Confidence 345778999999999999999999999988999999999999999999863 3468999999999999999999995
Q ss_pred CCCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 525 SAPIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 525 ~~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
.+|+|||+|+.. ......++..|+|||++....++.++|||||||++|||+|
T Consensus 337 -~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~ 415 (495)
T 1opk_A 337 -KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATY 415 (495)
T ss_dssp -TTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTT
T ss_pred -CCcccCCCChhhEEECCCCcEEEeecccceeccCCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhC
Confidence 479999999531 0011235678999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||.... ...+.+.+...... +.+..++..+.+++.+||+.||++||||.+|++.|+.+
T Consensus 416 g~~p~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~ 476 (495)
T 1opk_A 416 GMSPYPGID--LSQVYELLEKDYRM-----------------ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 476 (495)
T ss_dssp SCCSSTTCC--GGGHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred CCCCCCCCC--HHHHHHHHHcCCCC-----------------CCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 999987643 22233333322111 11223345678999999999999999999999999987
Q ss_pred H
Q 040540 658 K 658 (669)
Q Consensus 658 ~ 658 (669)
.
T Consensus 477 ~ 477 (495)
T 1opk_A 477 F 477 (495)
T ss_dssp C
T ss_pred H
Confidence 4
No 117
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=99.93 E-value=1.8e-26 Score=240.81 Aligned_cols=192 Identities=24% Similarity=0.397 Sum_probs=149.6
Q ss_pred ccCchhhhhhccc-cccccceecccccccc-ccceeeccCCCCChHHhhhcCCC--------------------------
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPD-FKALVLEFMPNGSLEKWLYSHNY-------------------------- 498 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~-~~~lv~ey~~~g~L~~~l~~~~~-------------------------- 498 (669)
+.+..|+.++..+ +|||+++++++|.... ..++||||+++|+|.++++....
T Consensus 70 ~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (359)
T 3vhe_A 70 RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDL 149 (359)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------
T ss_pred HHHHHHHHHHHhhcCCcceeeeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhh
Confidence 4567899999999 7899999999987754 47899999999999999975321
Q ss_pred ---------------------------------------ccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc--
Q 040540 499 ---------------------------------------FLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV-- 537 (669)
Q Consensus 499 ---------------------------------------~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~-- 537 (669)
.+++.....++.++++||+|||.. +|+|+|+|+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~----~ivH~Dikp~NIl 225 (359)
T 3vhe_A 150 KRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR----KCIHRDLAARNIL 225 (359)
T ss_dssp ----------------------------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT----TCCCSCCSGGGEE
T ss_pred hccccccCccccccccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC----CcccCCCChhhEE
Confidence 288889999999999999999954 79999999531
Q ss_pred -------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCCCCCcCCCCCcc
Q 040540 538 -------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMS 591 (669)
Q Consensus 538 -------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~ 591 (669)
......||+.|+|||++.+..++.++|||||||++|||+| |+.||....... .
T Consensus 226 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-~ 304 (359)
T 3vhe_A 226 LSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-E 304 (359)
T ss_dssp ECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH-H
T ss_pred EcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhH-H
Confidence 0112347889999999988889999999999999999999 999997643222 2
Q ss_pred HHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHHH
Q 040540 592 LRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 592 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
+...+........ +......+.+++.+||+.||++||||.||++.|+++.+.
T Consensus 305 ~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 356 (359)
T 3vhe_A 305 FCRRLKEGTRMRA-----------------PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 356 (359)
T ss_dssp HHHHHHHTCCCCC-----------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCC-----------------CCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence 2222222211111 112234578999999999999999999999999998765
No 118
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=99.93 E-value=7.7e-26 Score=232.45 Aligned_cols=191 Identities=18% Similarity=0.295 Sum_probs=149.3
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+.+..|+..+..++|+|+++++++|. ....++||||+++|+|.+++...+..+++..+..++.++++||+|||..
T Consensus 59 ~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~--- 134 (325)
T 3kex_A 59 FQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEH--- 134 (325)
T ss_dssp BCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhC---
Confidence 346778899999999999999999886 4567899999999999999987666789999999999999999999954
Q ss_pred CCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 526 APIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 526 ~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+|+|||+|+.. ......||..|+|||++.+..++.++|||||||++|||+|
T Consensus 135 -~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~ 213 (325)
T 3kex_A 135 -GMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTF 213 (325)
T ss_dssp -TCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred -CCCCCccchheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhC
Confidence 79999999541 0112246779999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||..... ..+...+......... ..+...+.+++.+||+.||.+||++.|+++.|+++
T Consensus 214 g~~p~~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~ 274 (325)
T 3kex_A 214 GAEPYAGLRL--AEVPDLLEKGERLAQP-----------------QICTIDVYMVMVKCWMIDENIRPTFKELANEFTRM 274 (325)
T ss_dssp SCCTTTTSCT--THHHHHHHTTCBCCCC-----------------TTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHH
T ss_pred CCCCccccCH--HHHHHHHHcCCCCCCC-----------------CcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 9999976332 2233333322111111 11122457899999999999999999999999987
Q ss_pred HHH
Q 040540 658 KVK 660 (669)
Q Consensus 658 ~~~ 660 (669)
...
T Consensus 275 ~~~ 277 (325)
T 3kex_A 275 ARD 277 (325)
T ss_dssp TTS
T ss_pred Hhc
Confidence 543
No 119
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=99.93 E-value=5.1e-26 Score=229.04 Aligned_cols=191 Identities=19% Similarity=0.319 Sum_probs=152.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|+|++++++++......++||||+++|+|.+++......+++.++..++.++++|++|||..
T Consensus 64 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---- 139 (283)
T 3gen_A 64 DEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---- 139 (283)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 3466899999999999999999999998899999999999999999987556789999999999999999999954
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|+|+|+.. ......||+.|+|||++.+..++.++||||+|+++|||+| |+
T Consensus 140 ~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~ 219 (283)
T 3gen_A 140 QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGK 219 (283)
T ss_dssp TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTC
T ss_pred CccCCCCccceEEEcCCCCEEEccccccccccccccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCC
Confidence 79999999541 0111235678999999988889999999999999999999 99
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||.... .......+........ +......+.+++.+||+.||++|||+.|+++.|+++.+
T Consensus 220 ~p~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~ 280 (283)
T 3gen_A 220 MPYERFT--NSETAEHIAQGLRLYR-----------------PHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMD 280 (283)
T ss_dssp CTTTTSC--HHHHHHHHHTTCCCCC-----------------CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCccccC--hhHHHHHHhcccCCCC-----------------CCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhh
Confidence 9987532 1112222222111100 11123457899999999999999999999999999876
Q ss_pred H
Q 040540 660 K 660 (669)
Q Consensus 660 ~ 660 (669)
.
T Consensus 281 ~ 281 (283)
T 3gen_A 281 E 281 (283)
T ss_dssp H
T ss_pred c
Confidence 4
No 120
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=99.93 E-value=4.9e-26 Score=236.05 Aligned_cols=196 Identities=20% Similarity=0.321 Sum_probs=151.0
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCC----------------------ccCHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNY----------------------FLDIL 503 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~----------------------~l~~~ 503 (669)
+.+..|+.++..+ +|||++++++++...+..++||||+++|+|.+++..... .+++.
T Consensus 93 ~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (344)
T 1rjb_A 93 EALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFE 172 (344)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHH
T ss_pred HHHHHHHHHHHhhcCCCCeeeEEEEEeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHH
Confidence 4567899999999 899999999999999999999999999999999986432 37889
Q ss_pred HHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccC
Q 040540 504 ERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSE 556 (669)
Q Consensus 504 ~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~ 556 (669)
.+..++.++++||+|||. .+|+|+|+|+.. ......||+.|+|||++.+
T Consensus 173 ~~~~i~~qi~~aL~~LH~----~~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~ 248 (344)
T 1rjb_A 173 DLLCFAYQVAKGMEFLEF----KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFE 248 (344)
T ss_dssp HHHHHHHHHHHHHHHHHH----TTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh----CCcccCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhcc
Confidence 999999999999999995 489999999541 0112236778999999988
Q ss_pred CCcCccccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 557 GIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 557 ~~~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
..++.++|||||||++|||+| |+.||..... ...+...+........ +...+..+.+++.+
T Consensus 249 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~~-~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~ 310 (344)
T 1rjb_A 249 GIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV-DANFYKLIQNGFKMDQ-----------------PFYATEEIYIIMQS 310 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC-SHHHHHHHHTTCCCCC-----------------CTTCCHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHcCCCCCcccCCc-HHHHHHHHhcCCCCCC-----------------CCCCCHHHHHHHHH
Confidence 889999999999999999998 9999976432 2223333332211110 11223467899999
Q ss_pred cccCCCCCCCCHHHHHHHHHHhHHHhhhh
Q 040540 636 CCMESPDKRMHMTDAAAKLKKIKVKFLDD 664 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~~l~~~~~~~~~~ 664 (669)
||..||.+|||+.|+++.|+.+.....++
T Consensus 311 ~l~~dp~~Rps~~~l~~~l~~~~~~~~~~ 339 (344)
T 1rjb_A 311 CWAFDSRKRPSFPNLTSFLGCQLADAEEA 339 (344)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHHC------
T ss_pred HcCCCchhCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987765443
No 121
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=99.93 E-value=4.2e-26 Score=233.33 Aligned_cols=191 Identities=26% Similarity=0.393 Sum_probs=152.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-----------------------CccCHH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-----------------------YFLDIL 503 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-----------------------~~l~~~ 503 (669)
+.+..|+..+..++|||++++++++......++||||+++|+|.+++.... ..+++.
T Consensus 71 ~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (314)
T 2ivs_A 71 RDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMG 150 (314)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHH
T ss_pred HHHHHHHHHHhhCCCCceeeEEEEEecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHH
Confidence 456779999999999999999999999999999999999999999997532 247889
Q ss_pred HHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccC
Q 040540 504 ERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSE 556 (669)
Q Consensus 504 ~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~ 556 (669)
++..++.++++|++|||.. +++|+|+|+.. ......||+.|+|||...+
T Consensus 151 ~~~~i~~qi~~~l~~lH~~----~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~ 226 (314)
T 2ivs_A 151 DLISFAWQISQGMQYLAEM----KLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFD 226 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHT----TEECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC----CCcccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcC
Confidence 9999999999999999954 79999999531 0111236788999999988
Q ss_pred CCcCccccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 557 GIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 557 ~~~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
..++.++|||||||++|||+| |+.||..... ..+...+........ +...+..+.+++.+
T Consensus 227 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~~~li~~ 287 (314)
T 2ivs_A 227 HIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP--ERLFNLLKTGHRMER-----------------PDNCSEEMYRLMLQ 287 (314)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG--GGHHHHHHTTCCCCC-----------------CTTCCHHHHHHHHH
T ss_pred CCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHhhcCCcCCC-----------------CccCCHHHHHHHHH
Confidence 889999999999999999999 9999976322 223333332211110 11233567899999
Q ss_pred cccCCCCCCCCHHHHHHHHHHhHHH
Q 040540 636 CCMESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
||+.||++||++.|+++.|+++..+
T Consensus 288 ~l~~dp~~Rps~~~l~~~l~~~~~~ 312 (314)
T 2ivs_A 288 CWKQEPDKRPVFADISKDLEKMMVK 312 (314)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HccCChhhCcCHHHHHHHHHHHHhh
Confidence 9999999999999999999998654
No 122
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.93 E-value=6.3e-26 Score=226.25 Aligned_cols=191 Identities=24% Similarity=0.346 Sum_probs=152.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++......++||||+++++|.+++......+++..+..++.++++|+.|||..
T Consensus 48 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---- 123 (267)
T 3t9t_A 48 EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---- 123 (267)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 3567899999999999999999999988899999999999999999987666789999999999999999999954
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|+|+++.. ......||..|+|||+..+..++.++||||+|+++|||+| |+
T Consensus 124 ~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~ 203 (267)
T 3t9t_A 124 CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGK 203 (267)
T ss_dssp TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CcccCCCchheEEECCCCCEEEcccccccccccccccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCC
Confidence 79999999541 0111236678999999988889999999999999999999 89
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||.... .......+........ +......+.+++.+||+.||++||++.|+++.|+++.+
T Consensus 204 ~p~~~~~--~~~~~~~i~~~~~~~~-----------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (267)
T 3t9t_A 204 IPYENRS--NSEVVEDISTGFRLYK-----------------PRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 264 (267)
T ss_dssp CTTTTCC--HHHHHHHHHTTCCCCC-----------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCCC--HHHHHHHHhcCCcCCC-----------------CccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 9986532 1112222222211100 11123457899999999999999999999999999876
Q ss_pred H
Q 040540 660 K 660 (669)
Q Consensus 660 ~ 660 (669)
+
T Consensus 265 ~ 265 (267)
T 3t9t_A 265 S 265 (267)
T ss_dssp C
T ss_pred c
Confidence 4
No 123
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=99.93 E-value=5.1e-26 Score=229.76 Aligned_cols=194 Identities=20% Similarity=0.298 Sum_probs=146.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++...+..++||||+++|+|.+++......+++..+..++.++++||+|||..
T Consensus 57 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---- 132 (289)
T 4fvq_A 57 ESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEEN---- 132 (289)
T ss_dssp HHHHHHHHHHHTSCCTTBCCEEEEECCTTCCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeEEEEEEEeCCCCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhC----
Confidence 3567789999999999999999999998899999999999999999987666689999999999999999999954
Q ss_pred CeeecCCCCccc-----------------------------ccccccccccCccccccC-CCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSVT-----------------------------QTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~~-----------------------------~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+|+... .....||+.|+|||++.+ ..++.++|||||||++|||+
T Consensus 133 ~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~ 212 (289)
T 4fvq_A 133 TLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEIC 212 (289)
T ss_dssp TCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSCHHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHH
T ss_pred CeECCCcCcceEEEecCCcccccccceeeeccCcccccccCccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHH
Confidence 799999995410 001137889999999887 66899999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~ 656 (669)
||..|+..... ........... ..... .....+.+++.+||+.||++|||+.|+++.|++
T Consensus 213 ~g~~~~~~~~~-~~~~~~~~~~~--~~~~~-----------------~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~ 272 (289)
T 4fvq_A 213 SGGDKPLSALD-SQRKLQFYEDR--HQLPA-----------------PKAAELANLINNCMDYEPDHRPSFRAIIRDLNS 272 (289)
T ss_dssp TTTCCTTTTSC-HHHHHHHHHTT--CCCCC-----------------CSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHT
T ss_pred cCCCCCccccc-hHHHHHHhhcc--CCCCC-----------------CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence 96555432111 11111111111 11110 011235789999999999999999999999999
Q ss_pred hHHHhhhh
Q 040540 657 IKVKFLDD 664 (669)
Q Consensus 657 ~~~~~~~~ 664 (669)
+.......
T Consensus 273 l~~p~~~~ 280 (289)
T 4fvq_A 273 LFTPDLVP 280 (289)
T ss_dssp CC------
T ss_pred hcCCCCCC
Confidence 87654433
No 124
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=99.93 E-value=6e-26 Score=238.62 Aligned_cols=192 Identities=23% Similarity=0.377 Sum_probs=153.2
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMI 510 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~ 510 (669)
+.+..|+.++..+ +|||+++++++|...+..++||||+++|+|.+++.... ..+++.++..|+.
T Consensus 119 ~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 198 (382)
T 3tt0_A 119 SDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAY 198 (382)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchhhhheeeeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHH
Confidence 4566899999999 89999999999999999999999999999999997643 3589999999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccc
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKC 563 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~ 563 (669)
++++||+|||.. +|+|||+|+.. ......||+.|+|||++.+..++.++
T Consensus 199 qi~~aL~~LH~~----~ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~ 274 (382)
T 3tt0_A 199 QVARGMEYLASK----KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQS 274 (382)
T ss_dssp HHHHHHHHHHHT----TCCCSCCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHhC----CEecCCCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchh
Confidence 999999999954 79999999531 01112367889999999988899999
Q ss_pred cchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 564 DVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 564 Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
|||||||++|||+| |+.||.... ...+...+........ +..+...+.+++.+||+.||+
T Consensus 275 DiwslG~il~ellt~g~~p~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~dP~ 335 (382)
T 3tt0_A 275 DVWSFGVLLWEIFTLGGSPYPGVP--VEELFKLLKEGHRMDK-----------------PSNCTNELYMMMRDCWHAVPS 335 (382)
T ss_dssp HHHHHHHHHHHHHTTSCCSSTTCC--HHHHHHHHHTTCCCCC-----------------CSSCCHHHHHHHHHHTCSSGG
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHcCCCCCC-----------------CccCCHHHHHHHHHHcCCChh
Confidence 99999999999999 999986532 2222333322211110 112234678999999999999
Q ss_pred CCCCHHHHHHHHHHhHHHh
Q 040540 643 KRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 643 ~Rps~~~v~~~l~~~~~~~ 661 (669)
+|||+.||++.|+++....
T Consensus 336 ~Rps~~ell~~L~~~~~~~ 354 (382)
T 3tt0_A 336 QRPTFKQLVEDLDRIVALT 354 (382)
T ss_dssp GSCCHHHHHHHHHHHHHHS
T ss_pred hCcCHHHHHHHHHHHHHHH
Confidence 9999999999999998664
No 125
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=99.93 E-value=3.7e-25 Score=228.71 Aligned_cols=195 Identities=23% Similarity=0.310 Sum_probs=143.8
Q ss_pred ccccccccceeccccccc----cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC----CCCCe
Q 040540 457 RNVRHRNLIKIISSCSNP----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH----SSAPI 528 (669)
Q Consensus 457 ~~l~h~niv~l~~~~~~~----~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~----~~~~i 528 (669)
..++|+|++++++++... ...++||||+++|+|.++++.. .+++..+..++.++++|++|||... ..+++
T Consensus 86 ~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~i 163 (337)
T 3mdy_A 86 VLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKST--TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAI 163 (337)
T ss_dssp TTCCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCE
T ss_pred HhhcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCE
Confidence 335899999999988765 6678999999999999999753 5899999999999999999999531 12389
Q ss_pred eecCCCCcc-----------------------------cccccccccccCccccccCCCcCcc------ccchhhHHHHH
Q 040540 529 IHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEGIVSAK------CDVYSYGVLLM 573 (669)
Q Consensus 529 ~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~------~Dv~s~Gvil~ 573 (669)
+|||+|+.. ......||+.|+|||++.+..++.+ +|||||||++|
T Consensus 164 vH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~ 243 (337)
T 3mdy_A 164 AHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILW 243 (337)
T ss_dssp ECSCCCGGGEEECTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHH
T ss_pred EecccchHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHH
Confidence 999999531 0012358999999999877665554 99999999999
Q ss_pred HHHhC----------CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 574 ETFTR----------KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 574 el~tg----------~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||+|| +.||....................... +.... .....+++..+.+++.+||+.||++
T Consensus 244 el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~l~~li~~~l~~dP~~ 315 (337)
T 3mdy_A 244 EVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLR----PSFPN----RWSSDECLRQMGKLMTECWAHNPAS 315 (337)
T ss_dssp HHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCC----CCCCG----GGGGSHHHHHHHHHHHHHSCSSGGG
T ss_pred HHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccC----ccccc----cchhhHHHHHHHHHHHHhhhhChhh
Confidence 99999 666655433333332222221111111 11111 1113467788999999999999999
Q ss_pred CCCHHHHHHHHHHhHHHh
Q 040540 644 RMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 644 Rps~~~v~~~l~~~~~~~ 661 (669)
|||+.||++.|+++.+..
T Consensus 316 Rps~~ell~~L~~l~~~~ 333 (337)
T 3mdy_A 316 RLTALRVKKTLAKMSESQ 333 (337)
T ss_dssp SCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhhc
Confidence 999999999999987753
No 126
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.3e-25 Score=242.95 Aligned_cols=149 Identities=22% Similarity=0.198 Sum_probs=79.4
Q ss_pred CCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeee
Q 040540 74 LSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLR 153 (669)
Q Consensus 74 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 153 (669)
+++|++|+|++|.+.+..|..|+.+++|++|+|++|.+.+..| ++.+++|++|+|++|.+++..+ .++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3466667777666666666666666666666666666665443 6666666666666666653221 24555555
Q ss_pred cccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCcccc-CCCCCcEEEcccCCCc
Q 040540 154 AEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIF-NISTMRILTLESNQLS 232 (669)
Q Consensus 154 l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~l~~L~~L~l~~n~l~ 232 (669)
+++|.+++..+. .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 555555443332 224444455555554444444444444444444444444444444433 3444444444444443
No 127
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=99.92 E-value=6e-26 Score=232.07 Aligned_cols=196 Identities=20% Similarity=0.307 Sum_probs=154.4
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCC-----------------ccCHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNY-----------------FLDILERLNI 508 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~-----------------~l~~~~~~~i 508 (669)
+.+..|+..+..+ +|||++++++++...+..++||||+++|+|.+++..... .+++..+..+
T Consensus 71 ~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (313)
T 1t46_A 71 EALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSF 150 (313)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCCeeeEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHH
Confidence 4567899999999 999999999999999999999999999999999976432 4889999999
Q ss_pred HHhHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCc
Q 040540 509 MIDVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSA 561 (669)
Q Consensus 509 ~~~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~ 561 (669)
+.++++|++|||.. +++|+|+|+.. ......||+.|+|||++.+..++.
T Consensus 151 ~~qi~~~l~~lH~~----~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~ 226 (313)
T 1t46_A 151 SYQVAKGMAFLASK----NCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTF 226 (313)
T ss_dssp HHHHHHHHHHHHHT----TCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCH
T ss_pred HHHHHHHHHHHHHC----CeecCCCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCCh
Confidence 99999999999954 79999999531 011223677899999998888999
Q ss_pred cccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCC
Q 040540 562 KCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMES 640 (669)
Q Consensus 562 ~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~ 640 (669)
++|||||||++|||+| |+.||...... ..+...+........ +...+..+.+++.+||+.|
T Consensus 227 ~~Di~slG~il~ellt~g~~p~~~~~~~-~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~d 288 (313)
T 1t46_A 227 ESDVWSYGIFLWELFSLGSSPYPGMPVD-SKFYKMIKEGFRMLS-----------------PEHAPAEMYDIMKTCWDAD 288 (313)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSSTTCCSS-HHHHHHHHHTCCCCC-----------------CTTSCHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcccch-hHHHHHhccCCCCCC-----------------cccCCHHHHHHHHHHcCCC
Confidence 9999999999999999 99998764322 222233332221110 1122345789999999999
Q ss_pred CCCCCCHHHHHHHHHHhHHHhhhh
Q 040540 641 PDKRMHMTDAAAKLKKIKVKFLDD 664 (669)
Q Consensus 641 P~~Rps~~~v~~~l~~~~~~~~~~ 664 (669)
|.+|||+.|+++.|+++.....++
T Consensus 289 p~~Rps~~ell~~L~~~~~~~~~~ 312 (313)
T 1t46_A 289 PLKRPTFKQIVQLIEKQISESTNH 312 (313)
T ss_dssp GGGSCCHHHHHHHHHHHHHHTCC-
T ss_pred chhCcCHHHHHHHHHHHHHHhhcC
Confidence 999999999999999988765443
No 128
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=99.92 E-value=2.9e-26 Score=246.47 Aligned_cols=191 Identities=20% Similarity=0.353 Sum_probs=150.2
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+.+..|+.++..++|||++++++++. ....++|||||++|+|.++++... ..+++..+..++.++++||+|||..
T Consensus 227 ~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-- 303 (454)
T 1qcf_A 227 VEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR-- 303 (454)
T ss_dssp HHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC--
Confidence 356778999999999999999999886 566789999999999999998532 3578889999999999999999954
Q ss_pred CCCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 525 SAPIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 525 ~~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+++|||+|+.. ......+|..|+|||++....++.++|||||||++|||+|
T Consensus 304 --~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~ 381 (454)
T 1qcf_A 304 --NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTY 381 (454)
T ss_dssp --TCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred --CccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhC
Confidence 79999999531 0111235678999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||.... ...+...+...... +.+..++..+.+++.+||..||++||||.+|++.|+++
T Consensus 382 g~~P~~~~~--~~~~~~~i~~~~~~-----------------~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~ 442 (454)
T 1qcf_A 382 GRIPYPGMS--NPEVIRALERGYRM-----------------PRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDF 442 (454)
T ss_dssp SCCSSTTCC--HHHHHHHHHHTCCC-----------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred CCCCCCCCC--HHHHHHHHHcCCCC-----------------CCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHH
Confidence 999997532 12222223222111 11223345678999999999999999999999999987
Q ss_pred HHH
Q 040540 658 KVK 660 (669)
Q Consensus 658 ~~~ 660 (669)
...
T Consensus 443 ~~~ 445 (454)
T 1qcf_A 443 YTA 445 (454)
T ss_dssp SSS
T ss_pred Hhc
Confidence 543
No 129
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=99.92 E-value=8.6e-26 Score=231.46 Aligned_cols=182 Identities=19% Similarity=0.272 Sum_probs=145.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|++++++++......++||||+++|+|.+++.. ..+++..+..++.++++|++|||. .+
T Consensus 88 ~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~--~~l~~~~~~~i~~qi~~~L~~LH~----~~ 161 (321)
T 2c30_A 88 LLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ--VRLNEEQIATVCEAVLQALAYLHA----QG 161 (321)
T ss_dssp HHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 466799999999999999999999988889999999999999999874 458999999999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.||
T Consensus 162 ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf 241 (321)
T 2c30_A 162 VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPY 241 (321)
T ss_dssp EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred eecCCCCHHHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 9999998531 112235899999999999888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.... .......+....+.... ........+.+++.+||+.||++|||+.|+++
T Consensus 242 ~~~~--~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 242 FSDS--PVQAMKRLRDSPPPKLK---------------NSHKVSPVLRDFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp TTSC--HHHHHHHHHHSSCCCCT---------------TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCC--HHHHHHHHhcCCCCCcC---------------ccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 6532 12222222222211110 01122345789999999999999999999986
No 130
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=99.92 E-value=3.5e-26 Score=230.91 Aligned_cols=192 Identities=22% Similarity=0.358 Sum_probs=145.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|+|++++++++. ....++||||+++++|.+++......+++..+..++.++++||+|||..
T Consensus 65 ~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---- 139 (289)
T 3og7_A 65 QAFKNEVGVLRKTRHVNILLFMGYST-APQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAK---- 139 (289)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCcEEEEEeecc-CCccEEEEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 45678999999999999999999654 4567899999999999999987667799999999999999999999954
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCcccccc---CCCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+|+.. ......||+.|+|||++. ...++.++|||||||++|||+
T Consensus 140 ~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~ 219 (289)
T 3og7_A 140 SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELM 219 (289)
T ss_dssp TCCCSCCCGGGEEEETTTEEEECCCC------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHH
T ss_pred CcccccCccceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHH
Confidence 79999999541 001124899999999886 566888999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhC-CCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESL-PHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
+|+.||..... ...+...+.... +...... ...++..+.+++.+||+.||++|||+.|++++|+
T Consensus 220 ~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~ 284 (289)
T 3og7_A 220 TGQLPYSNINN-RDQIIEMVGRGSLSPDLSKV--------------RSNCPKRMKRLMAECLKKKRDERPSFPRILAEIE 284 (289)
T ss_dssp HSSCTTSSCCC-HHHHHHHHHHTSCCCCTTSS--------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HCCCCccccch-HHHHHHHhcccccCcchhhc--------------cccCCHHHHHHHHHHccCChhhCCCHHHHHHHHH
Confidence 99999976322 222333332221 1111100 1123456789999999999999999999999999
Q ss_pred HhH
Q 040540 656 KIK 658 (669)
Q Consensus 656 ~~~ 658 (669)
++.
T Consensus 285 ~l~ 287 (289)
T 3og7_A 285 ELA 287 (289)
T ss_dssp HTT
T ss_pred HHh
Confidence 874
No 131
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=99.92 E-value=7.5e-26 Score=234.93 Aligned_cols=185 Identities=18% Similarity=0.201 Sum_probs=145.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++.. ...+++.....++.+++.|++|||. .
T Consensus 60 ~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH~----~ 134 (361)
T 2yab_A 60 EEIEREVSILRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQ-KESLSEEEATSFIKQILDGVNYLHT----K 134 (361)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHTT-CSCCBHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEEEEEEcCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 3466899999999999999999999998999999999999999999975 3468999999999999999999995 4
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+|+|||+|+.. ......||+.|+|||++.+..++.++||||+||++|||++|
T Consensus 135 givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g 214 (361)
T 2yab_A 135 KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 214 (361)
T ss_dssp TEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred CcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhC
Confidence 79999998531 01223589999999999988899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||.... ...+...+...... . + .+.+...+..+.+++.+|+..||.+|||+.|+++
T Consensus 215 ~~Pf~~~~--~~~~~~~i~~~~~~-~----~---------~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 215 ASPFLGDT--KQETLANITAVSYD-F----D---------EEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp CCSSCCSS--HHHHHHHHHTTCCC-C----C---------HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCCCCCC--HHHHHHHHHhcCCC-C----C---------chhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 99996532 11111111111000 0 0 0112234456789999999999999999999985
No 132
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=99.92 E-value=7.7e-26 Score=235.52 Aligned_cols=185 Identities=17% Similarity=0.221 Sum_probs=146.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++... ..+++.+...++.++++|++|||..
T Consensus 73 ~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~al~~lH~~---- 147 (362)
T 2bdw_A 73 QKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR-EFYSEADASHCIQQILESIAYCHSN---- 147 (362)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTTC-SCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 35667999999999999999999999999999999999999999999753 4689999999999999999999954
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||++|+
T Consensus 148 ~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~ 227 (362)
T 2bdw_A 148 GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGY 227 (362)
T ss_dssp TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred CeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCC
Confidence 79999998531 011235899999999999888999999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||.... ...+...+........ .+.+...+..+.+++.+||+.||++||++.|+++
T Consensus 228 ~Pf~~~~--~~~~~~~i~~~~~~~~--------------~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 284 (362)
T 2bdw_A 228 PPFWDED--QHRLYAQIKAGAYDYP--------------SPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 284 (362)
T ss_dssp CSSCCSS--HHHHHHHHHHTCCCCC--------------TTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CCCCCCC--HHHHHHHHHhCCCCCC--------------cccccCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 9986532 1122222222111100 0112233456789999999999999999999875
No 133
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.92 E-value=9e-26 Score=227.67 Aligned_cols=194 Identities=16% Similarity=0.333 Sum_probs=153.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++ ..+..++||||+++++|.+++......+++..+..++.++++|+.|||..
T Consensus 55 ~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---- 129 (287)
T 1u59_A 55 EEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---- 129 (287)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 4567899999999999999999998 44567899999999999999986666799999999999999999999954
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+++|+|+++.. ......||+.|+|||++.+..++.++|||||||++|||+|
T Consensus 130 ~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~ 209 (287)
T 1u59_A 130 NFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSY 209 (287)
T ss_dssp TEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTT
T ss_pred CEeeCCCchheEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcC
Confidence 79999999531 0011235788999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||.... ...+...+....... .+...+..+.+++.+||+.||++||++.|+++.|+++
T Consensus 210 g~~p~~~~~--~~~~~~~i~~~~~~~-----------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 270 (287)
T 1u59_A 210 GQKPYKKMK--GPEVMAFIEQGKRME-----------------CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 270 (287)
T ss_dssp SCCTTTTCC--THHHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCcccCC--HHHHHHHHhcCCcCC-----------------CCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 999997632 222333332221110 0112345678999999999999999999999999999
Q ss_pred HHHhhhh
Q 040540 658 KVKFLDD 664 (669)
Q Consensus 658 ~~~~~~~ 664 (669)
.......
T Consensus 271 ~~~~~~~ 277 (287)
T 1u59_A 271 YYSLASK 277 (287)
T ss_dssp HHHHHTT
T ss_pred HHhcCCc
Confidence 7765443
No 134
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=99.92 E-value=5.1e-26 Score=237.77 Aligned_cols=191 Identities=17% Similarity=0.210 Sum_probs=149.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++......+++..+..++.|+++||+|||..
T Consensus 131 ~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---- 206 (373)
T 2x4f_A 131 EEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQM---- 206 (373)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 4567899999999999999999999998899999999999999999987666799999999999999999999954
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+|+|||+|+.. ......||+.|+|||++....++.++|||||||++|||+||+.
T Consensus 207 ~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~ 286 (373)
T 2x4f_A 207 YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLS 286 (373)
T ss_dssp TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCC
Confidence 79999998541 0112248999999999988889999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH--HHHHh
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA--KLKKI 657 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~--~l~~~ 657 (669)
||..... ...+.......... . . .........+.+++.+|++.||.+|||+.|+++ .+++.
T Consensus 287 pf~~~~~-~~~~~~i~~~~~~~--~----~---------~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~~~ 349 (373)
T 2x4f_A 287 PFLGDND-AETLNNILACRWDL--E----D---------EEFQDISEEAKEFISKLLIKEKSWRISASEALKHPWLSDH 349 (373)
T ss_dssp TTCCSSH-HHHHHHHHHTCCCS--C----S---------GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHCH
T ss_pred CCCCCCH-HHHHHHHHhccCCC--C----h---------hhhccCCHHHHHHHHHHcCCChhhCCCHHHHhcCcCcCCC
Confidence 9975321 11112222111100 0 0 001223456789999999999999999999987 44443
No 135
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=99.92 E-value=8.3e-26 Score=236.75 Aligned_cols=185 Identities=21% Similarity=0.258 Sum_probs=146.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++......++||||+++|+|.+++......+++.....++.++++||+|||. .+
T Consensus 94 ~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~----~g 169 (387)
T 1kob_A 94 TVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHE----HS 169 (387)
T ss_dssp HHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 46679999999999999999999999899999999999999999998766679999999999999999999995 47
Q ss_pred eeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.|
T Consensus 170 ivHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~P 249 (387)
T 1kob_A 170 IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSP 249 (387)
T ss_dssp EECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCS
T ss_pred eeecccchHHeEEecCCCCceEEEecccceecCCCcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCC
Confidence 9999998531 01122589999999999988899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|.... .......+...... .++. .+...+..+.+++.+||+.||.+|||+.|+++
T Consensus 250 f~~~~--~~~~~~~i~~~~~~-----~~~~---------~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 250 FAGED--DLETLQNVKRCDWE-----FDED---------AFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp SCCSS--HHHHHHHHHHCCCC-----CCSS---------TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred CCCCC--HHHHHHHHHhCCCC-----CCcc---------ccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence 97532 11122222111100 0000 01123456789999999999999999999986
No 136
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.92 E-value=8.9e-26 Score=232.69 Aligned_cols=190 Identities=22% Similarity=0.384 Sum_probs=151.4
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|||++++++++......++||||+++|+|.+++......+++..+..++.++++||+|||.. +
T Consensus 92 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~----~ 167 (333)
T 1mqb_A 92 DFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANM----N 167 (333)
T ss_dssp HHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC----C
Confidence 566799999999999999999999988899999999999999999987666799999999999999999999954 7
Q ss_pred eeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 528 IIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 528 i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
++|+|+|+... .....||+.|+|||++.+..++.++|||||||++|||+| |
T Consensus 168 ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g 247 (333)
T 1mqb_A 168 YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYG 247 (333)
T ss_dssp CCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred eeCCCCChheEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCC
Confidence 99999985410 001124678999999988889999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||.... ...+...+...... +.+...+..+.+++.+||+.||++||++.|+++.|+++.
T Consensus 248 ~~pf~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~ 308 (333)
T 1mqb_A 248 ERPYWELS--NHEVMKAINDGFRL-----------------PTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLI 308 (333)
T ss_dssp CCTTTTCC--HHHHHHHHHTTCCC-----------------CCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred CCCcccCC--HHHHHHHHHCCCcC-----------------CCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 99986532 11222222221110 001123346789999999999999999999999999987
Q ss_pred HH
Q 040540 659 VK 660 (669)
Q Consensus 659 ~~ 660 (669)
..
T Consensus 309 ~~ 310 (333)
T 1mqb_A 309 RA 310 (333)
T ss_dssp HS
T ss_pred hc
Confidence 54
No 137
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.92 E-value=4.5e-26 Score=235.10 Aligned_cols=181 Identities=22% Similarity=0.262 Sum_probs=139.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+.++..++|||++++++++...+..++||||+++|+|.+++... ..+++.+...++.|++.|++|||..
T Consensus 53 ~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH~~---- 127 (347)
T 3zgw_A 53 PRIKTEIEALKNLRHQHICQLYHVLETANKIFMVLEYCPGGELFDYIISQ-DRLSEEETRVVFRQIVSAVAYVHSQ---- 127 (347)
T ss_dssp CHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 34668999999999999999999999999999999999999999999753 4589999999999999999999954
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg~ 579 (669)
+|+|||+|+.. ......||+.|+|||++.+..+ +.++||||+||++|||++|+
T Consensus 128 givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~ 207 (347)
T 3zgw_A 128 GYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGNKDYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGF 207 (347)
T ss_dssp TCBCCCCCGGGEEECTTSCEEECCCTTCBC--------------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSS
T ss_pred CeEeCCccHHHEEEcCCCCEEEEeccCcccccCCCCccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCC
Confidence 79999999531 0122358999999999988765 89999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||.... ...+...+...... . +......+.+++.+||+.||++|||++|+++
T Consensus 208 ~Pf~~~~--~~~~~~~i~~~~~~-~-----------------p~~~s~~~~~li~~~L~~dP~~Rps~~eil~ 260 (347)
T 3zgw_A 208 LPFDDDN--VMALYKKIMRGKYD-V-----------------PKWLSPSSILLLQQMLQVDPKKRISMKNLLN 260 (347)
T ss_dssp CSSCCSS--HHHHHHHHHHTCCC-C-----------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCCCC--HHHHHHHHHcCCCC-C-----------------CCCCCHHHHHHHHHHcccCHhHCcCHHHHhc
Confidence 9997521 11122222211110 0 1112345678999999999999999999986
No 138
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=99.92 E-value=1.5e-25 Score=225.36 Aligned_cols=191 Identities=19% Similarity=0.268 Sum_probs=150.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++.. ...++||||+++++|.+++......+++.....++.++++|++|||. .
T Consensus 58 ~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~----~ 132 (281)
T 3cc6_A 58 EKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLES----I 132 (281)
T ss_dssp HHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 456779999999999999999998764 45689999999999999998766678999999999999999999995 4
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+++|+|+++.. ......||+.|+|||+..+..++.++||||||+++|||+| |+
T Consensus 133 ~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~ 212 (281)
T 3cc6_A 133 NCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGK 212 (281)
T ss_dssp TCCCCCCSGGGEEEEETTEEEECCCCGGGCC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CcccCCCccceEEECCCCcEEeCccCCCcccccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCC
Confidence 79999999541 0111236778999999988889999999999999999999 99
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||.... .......+........ +...+..+.+++.+||..||++||++.|+++.|+++..
T Consensus 213 ~p~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~ 273 (281)
T 3cc6_A 213 QPFFWLE--NKDVIGVLEKGDRLPK-----------------PDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQ 273 (281)
T ss_dssp CTTTTSC--GGGHHHHHHHTCCCCC-----------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCcccCC--hHHHHHHHhcCCCCCC-----------------CCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHH
Confidence 9997532 2223333322211100 11223457899999999999999999999999999876
Q ss_pred Hh
Q 040540 660 KF 661 (669)
Q Consensus 660 ~~ 661 (669)
..
T Consensus 274 ~~ 275 (281)
T 3cc6_A 274 ME 275 (281)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 139
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=99.92 E-value=1.6e-25 Score=227.18 Aligned_cols=198 Identities=10% Similarity=0.017 Sum_probs=153.3
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
..+..|+..+..+ +|++++.+++++......++||||+ +++|.+++...+..+++..+..|+.|+++|++|||.
T Consensus 50 ~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~---- 124 (298)
T 1csn_A 50 PQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHE---- 124 (298)
T ss_dssp CCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 3566788888888 7999999999998888899999999 899999998766679999999999999999999994
Q ss_pred CCeeecCCCCcc-------------------------------------cccccccccccCccccccCCCcCccccchhh
Q 040540 526 APIIHCEGEDSV-------------------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSY 568 (669)
Q Consensus 526 ~~i~h~d~~~~~-------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~ 568 (669)
.+++|+|+|+.. ......||+.|+|||++.+..++.++|||||
T Consensus 125 ~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~sl 204 (298)
T 1csn_A 125 KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEAL 204 (298)
T ss_dssp TTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHH
T ss_pred CCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHH
Confidence 489999998430 0112248899999999998889999999999
Q ss_pred HHHHHHHHhCCCCCCcCCCCCc-cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 569 GVLLMETFTRKRPTDEMFTGEM-SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 569 Gvil~el~tg~~p~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
||++|||++|+.||........ .....+...... ... .......+..+.+++.+||+.||++||++
T Consensus 205 G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~-------~~~------~~~~~~~~~~l~~li~~~l~~dp~~RP~~ 271 (298)
T 1csn_A 205 GHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQS-------TPL------RELCAGFPEEFYKYMHYARNLAFDATPDY 271 (298)
T ss_dssp HHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHH-------SCH------HHHTTTSCHHHHHHHHHHHHCCTTCCCCH
T ss_pred HHHHHHHHcCCCCcchhhccccHHHHHHHHhhccC-------ccH------HHHHhhCcHHHHHHHHHHhcCCcccCCCH
Confidence 9999999999999976432211 111111110000 000 00011334578899999999999999999
Q ss_pred HHHHHHHHHhHHHhh
Q 040540 648 TDAAAKLKKIKVKFL 662 (669)
Q Consensus 648 ~~v~~~l~~~~~~~~ 662 (669)
.+|++.|+++.....
T Consensus 272 ~~l~~~l~~~~~~~~ 286 (298)
T 1csn_A 272 DYLQGLFSKVLERLN 286 (298)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999987653
No 140
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=99.92 E-value=3.1e-25 Score=229.75 Aligned_cols=204 Identities=19% Similarity=0.306 Sum_probs=151.9
Q ss_pred cCchhhhhhcc--ccccccceecccccccc----ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRN--VRHRNLIKIISSCSNPD----FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~--l~h~niv~l~~~~~~~~----~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|.+++.. ++|||++++++++.... ..++||||+++|+|.+++.+ ..+++.++..++.++++|++|||.
T Consensus 80 ~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~~i~~~l~~lH~ 157 (342)
T 1b6c_B 80 SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR--YTVTVEGMIKLALSTASGLAHLHM 157 (342)
T ss_dssp HHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEECCCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEEeecCCCcHHHHHhc--cCccHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665 78999999999987765 67899999999999999975 358999999999999999999993
Q ss_pred CC----CCCCeeecCCCCcc-----------------------------cccccccccccCccccccCC------CcCcc
Q 040540 522 GH----SSAPIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEG------IVSAK 562 (669)
Q Consensus 522 ~~----~~~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~------~~~~~ 562 (669)
.. ...+++|+|+|+.. ......||+.|+|||++.+. .++.+
T Consensus 158 ~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~ 237 (342)
T 1b6c_B 158 EIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKR 237 (342)
T ss_dssp CBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHH
T ss_pred HHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCc
Confidence 21 13589999998530 01223589999999998765 34478
Q ss_pred ccchhhHHHHHHHHhC----------CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHH
Q 040540 563 CDVYSYGVLLMETFTR----------KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDL 632 (669)
Q Consensus 563 ~Dv~s~Gvil~el~tg----------~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 632 (669)
+|||||||++|||+|| +.||............+......... .+.+... ....++...+.++
T Consensus 238 ~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~l~~l 309 (342)
T 1b6c_B 238 ADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKL----RPNIPNR----WQSCEALRVMAKI 309 (342)
T ss_dssp HHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCC----CCCCCGG----GGTSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHHHHh----CCCCccc----ccchhHHHHHHHH
Confidence 9999999999999999 67876544333334333333222111 1111110 0123567788999
Q ss_pred HhhcccCCCCCCCCHHHHHHHHHHhHHHh
Q 040540 633 ALDCCMESPDKRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 633 ~~~c~~~~P~~Rps~~~v~~~l~~~~~~~ 661 (669)
+.+||+.||++|||+.||++.|+++.++.
T Consensus 310 i~~cl~~dp~~Rps~~~i~~~L~~i~~~~ 338 (342)
T 1b6c_B 310 MRECWYANGAARLTALRIKKTLSQLSQQE 338 (342)
T ss_dssp HHHHCCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred HHHHhccChhhCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998764
No 141
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=99.92 E-value=3.8e-26 Score=234.29 Aligned_cols=181 Identities=19% Similarity=0.223 Sum_probs=143.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+.+|+.+++.++|||++++++++......++||||+++|+|.+++... ..+++.....++.|+++|++|||. .
T Consensus 59 ~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~al~~lH~----~ 133 (328)
T 3fe3_A 59 QKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAH-GRMKEKEARSKFRQIVSAVQYCHQ----K 133 (328)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEECCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 34567999999999999999999999989999999999999999999754 458999999999999999999995 4
Q ss_pred CeeecCCCCcc------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|+|||+|+.. ......||+.|+|||++.+..+ +.++||||+||++|||+||+.|
T Consensus 134 ~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~p 213 (328)
T 3fe3_A 134 RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 213 (328)
T ss_dssp TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCS
T ss_pred CEeccCCCHHHEEEcCCCCEEEeeccCceecCCCCccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCC
Confidence 79999999541 1123358999999999988775 4899999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|.... ...+...+...... . +...+..+.+++.+|++.||.+|||++|+++
T Consensus 214 f~~~~--~~~~~~~i~~~~~~-~-----------------p~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 214 FDGQN--LKELRERVLRGKYR-I-----------------PFYMSTDCENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp SCCSS--HHHHHHHHHHCCCC-C-----------------CTTSCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred CCCCC--HHHHHHHHHhCCCC-C-----------------CCCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 97532 11122222111100 0 1112345789999999999999999999975
No 142
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=99.92 E-value=1.3e-25 Score=231.71 Aligned_cols=195 Identities=18% Similarity=0.308 Sum_probs=153.0
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcC-------------CCccCHHHHHHHHHhH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-------------NYFLDILERLNIMIDV 512 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-------------~~~l~~~~~~~i~~~i 512 (669)
+.+..|+.++..+ +|||++++++++......++||||+++|+|.+++... ...+++.....++.++
T Consensus 94 ~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi 173 (333)
T 2i1m_A 94 EALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQV 173 (333)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCeeeEEEEEecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHH
Confidence 3567899999999 8999999999999999999999999999999999752 2357889999999999
Q ss_pred HhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccc
Q 040540 513 GSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDV 565 (669)
Q Consensus 513 ~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv 565 (669)
++||+|||.. +++|+|+|+.. ......||+.|+|||++.+..++.++||
T Consensus 174 ~~~l~~lH~~----~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di 249 (333)
T 2i1m_A 174 AQGMAFLASK----NCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDV 249 (333)
T ss_dssp HHHHHHHHHT----TEECSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHH
T ss_pred HHHHHHHhcC----CcccCCcccceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHH
Confidence 9999999954 89999999541 0111236778999999988889999999
Q ss_pred hhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCC
Q 040540 566 YSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644 (669)
Q Consensus 566 ~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~R 644 (669)
|||||++|||+| |+.||...... ..+...+........ +...+..+.+++.+||+.||.+|
T Consensus 250 ~slG~il~el~t~g~~p~~~~~~~-~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~~p~~R 311 (333)
T 2i1m_A 250 WSYGILLWEIFSLGLNPYPGILVN-SKFYKLVKDGYQMAQ-----------------PAFAPKNIYSIMQACWALEPTHR 311 (333)
T ss_dssp HHHHHHHHHHTTTSCCSSTTCCSS-HHHHHHHHHTCCCCC-----------------CTTCCHHHHHHHHHHTCSSGGGS
T ss_pred HHHHHHHHHHHcCCCCCCcccchh-HHHHHHHhcCCCCCC-----------------CCCCCHHHHHHHHHHhccChhhC
Confidence 999999999999 89998763322 222333333221110 11123457899999999999999
Q ss_pred CCHHHHHHHHHHhHHHhhh
Q 040540 645 MHMTDAAAKLKKIKVKFLD 663 (669)
Q Consensus 645 ps~~~v~~~l~~~~~~~~~ 663 (669)
||+.||++.|+++.....+
T Consensus 312 ps~~~l~~~L~~~~~~~~~ 330 (333)
T 2i1m_A 312 PTFQQICSFLQEQAQEDRR 330 (333)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhhhc
Confidence 9999999999998776543
No 143
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=99.92 E-value=7.7e-26 Score=231.92 Aligned_cols=184 Identities=17% Similarity=0.229 Sum_probs=145.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|+|++++++++......++||||+++|+|.+++.. ...+++..+..++.++++||+|||. .
T Consensus 50 ~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~aL~~LH~----~ 124 (323)
T 3tki_A 50 ENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLHG----I 124 (323)
T ss_dssp -CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGSBT-TTBCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEcCCCCcHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 3566789999999999999999999999999999999999999999975 3458999999999999999999995 4
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg 578 (669)
+|+|+|+|+.. ......||+.|+|||++.+..+ +.++||||+||++|||+||
T Consensus 125 givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g 204 (323)
T 3tki_A 125 GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAG 204 (323)
T ss_dssp TEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHS
T ss_pred CccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhC
Confidence 79999999531 0113358999999999887665 7899999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||............|....... +.+......+.+++.+|++.||++|||+.|+++
T Consensus 205 ~~pf~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 205 ELPWDQPSDSCQEYSDWKEKKTYL-----------------NPWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp SCSCSSSCTTSHHHHHHHTTCTTS-----------------TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCCCchHHHHHHHHhcccccC-----------------CccccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 999976443333333332211100 001223445679999999999999999999975
No 144
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=99.92 E-value=2.8e-25 Score=225.34 Aligned_cols=195 Identities=20% Similarity=0.300 Sum_probs=153.2
Q ss_pred ccCchhhhhhccccccccceecccccccccc-ceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFK-ALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~-~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+..+..++|||++++++++...+.. +++|||+.+|+|.+++......+++..+..++.++++|++|||..
T Consensus 67 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~--- 143 (298)
T 3pls_A 67 EAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQ--- 143 (298)
T ss_dssp HHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC---
Confidence 4567899999999999999999998765554 899999999999999987667789999999999999999999954
Q ss_pred CCeeecCCCCcc-----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 526 APIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 526 ~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+|+.. ......||+.|+|||...+..++.++|||||||++|||+
T Consensus 144 -~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~ 222 (298)
T 3pls_A 144 -KFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELL 222 (298)
T ss_dssp -TCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred -CcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHh
Confidence 79999999531 011124688999999999888999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKK 656 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~ 656 (669)
||..|+... .....+...+........ +...+..+.+++.+||+.||.+|||+.++++.|++
T Consensus 223 ~g~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~ 284 (298)
T 3pls_A 223 TRGAPPYRH-IDPFDLTHFLAQGRRLPQ-----------------PEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQ 284 (298)
T ss_dssp HTSCCTTTT-SCGGGHHHHHHTTCCCCC-----------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred hCCCCCCcc-CCHHHHHHHhhcCCCCCC-----------------CccchHHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence 966664432 222334433333221111 11223457899999999999999999999999999
Q ss_pred hHHHhhh
Q 040540 657 IKVKFLD 663 (669)
Q Consensus 657 ~~~~~~~ 663 (669)
+...+..
T Consensus 285 ~~~~l~~ 291 (298)
T 3pls_A 285 IVSALLG 291 (298)
T ss_dssp HHHHCCS
T ss_pred HHHHHhc
Confidence 9887643
No 145
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=99.92 E-value=2e-25 Score=226.54 Aligned_cols=193 Identities=19% Similarity=0.351 Sum_probs=149.3
Q ss_pred ccCchhhhhhccccccccceeccccc-cccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCS-NPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~-~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+..+++++|||+++++++|. .....++||||+++|+|.++++.....+++..+..++.++++|++|||..
T Consensus 71 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~--- 147 (298)
T 3f66_A 71 SQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK--- 147 (298)
T ss_dssp HHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---
Confidence 45678999999999999999999864 45677899999999999999987667789999999999999999999954
Q ss_pred CCeeecCCCCcc-----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 526 APIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 526 ~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+|+.. ......||+.|+|||...+..++.++||||+|+++|||+
T Consensus 148 -~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~ 226 (298)
T 3f66_A 148 -KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELM 226 (298)
T ss_dssp -TCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred -CccCCCCchheEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHH
Confidence 79999999531 011223677899999998888999999999999999999
Q ss_pred hC-CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 577 TR-KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 577 tg-~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
+| ..||.... ................ +...+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 227 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~ 287 (298)
T 3f66_A 227 TRGAPPYPDVN--TFDITVYLLQGRRLLQ-----------------PEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRIS 287 (298)
T ss_dssp TTSCCSSTTSC--TTTHHHHHHTTCCCCC-----------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred hCCCCCCccCC--HHHHHHHHhcCCCCCC-----------------CccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 95 55554422 2222222222211100 1112345789999999999999999999999999
Q ss_pred HhHHHhh
Q 040540 656 KIKVKFL 662 (669)
Q Consensus 656 ~~~~~~~ 662 (669)
++...+.
T Consensus 288 ~~~~~~~ 294 (298)
T 3f66_A 288 AIFSTFI 294 (298)
T ss_dssp HHHHTSC
T ss_pred HHHHhhc
Confidence 9987654
No 146
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=99.92 E-value=1.1e-25 Score=231.14 Aligned_cols=185 Identities=18% Similarity=0.209 Sum_probs=145.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++.. ...+++..+..++.++++||.|||. .
T Consensus 59 ~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~al~~lH~----~ 133 (326)
T 2y0a_A 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAE-KESLTEEEATEFLKQILNGVYYLHS----L 133 (326)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHTT-SSCCBHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEEcCCCCCHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHH----C
Confidence 3566899999999999999999999998899999999999999999975 3568999999999999999999995 4
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||++|
T Consensus 134 ~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g 213 (326)
T 2y0a_A 134 QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213 (326)
T ss_dssp TEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred CeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHC
Confidence 79999998531 01123489999999999888899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||..... ......+...... ... ..+...+..+.+++.+||+.||++|||+.|+++
T Consensus 214 ~~pf~~~~~--~~~~~~~~~~~~~---------~~~-----~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 214 ASPFLGDTK--QETLANVSAVNYE---------FED-----EYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp CCSSCCSSH--HHHHHHHHHTCCC---------CCH-----HHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred cCCCCCCCH--HHHHHHHHhcCCC---------cCc-----cccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 999965321 1111111111000 000 011233456789999999999999999999986
No 147
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=99.92 E-value=1.4e-25 Score=239.12 Aligned_cols=185 Identities=16% Similarity=0.178 Sum_probs=146.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++...+..++||||+++|+|.+.+... ..+++.....++.+++.|++|||..
T Consensus 55 ~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~i~~~-~~~~e~~~~~i~~qil~aL~~lH~~---- 129 (444)
T 3soa_A 55 QKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAR-EYYSEADASHCIQQILEAVLHCHQM---- 129 (444)
T ss_dssp HHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEECCCBCCBHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEEEeCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 34668999999999999999999999999999999999999999999864 4589999999999999999999954
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+|+|||+|+.. ......||+.|+|||++.+..++.++||||+||++|||++|
T Consensus 130 givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G 209 (444)
T 3soa_A 130 GVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVG 209 (444)
T ss_dssp TCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHS
T ss_pred CccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhC
Confidence 79999999531 01123589999999999988899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||.... ...+...+........ .+.+...+..+.+++.+|++.||++|||+.|+++
T Consensus 210 ~~Pf~~~~--~~~~~~~i~~~~~~~~--------------~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 210 YPPFWDED--QHRLYQQIKAGAYDFP--------------SPEWDTVTPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp SCSCCCSS--HHHHHHHHHHTCCCCC--------------TTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCCCCcc--HHHHHHHHHhCCCCCC--------------ccccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 99996522 2222222222111100 0112233456789999999999999999999986
No 148
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=99.92 E-value=1.1e-25 Score=233.57 Aligned_cols=185 Identities=18% Similarity=0.209 Sum_probs=144.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++.. .+..+++.....++.|+++||+|||.
T Consensus 71 ~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~-- 148 (351)
T 3c0i_A 71 EDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHD-- 148 (351)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH--
Confidence 3567899999999999999999999988899999999999999988864 23458899999999999999999995
Q ss_pred CCCCeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 524 SSAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 524 ~~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
.+|+|||+|+.. ......||+.|+|||++.+..++.++||||+||++|||
T Consensus 149 --~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l 226 (351)
T 3c0i_A 149 --NNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFIL 226 (351)
T ss_dssp --TTEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHH
T ss_pred --CCceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHH
Confidence 479999998530 01123589999999999988899999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
++|+.||.... ..+...+...... .. ...+...+..+.+++.+||+.||++|||+.|+++
T Consensus 227 l~g~~pf~~~~---~~~~~~i~~~~~~-----~~---------~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 227 LSGCLPFYGTK---ERLFEGIIKGKYK-----MN---------PRQWSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp HHSSCSSCSSH---HHHHHHHHHTCCC-----CC---------HHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHCCCCCCCcH---HHHHHHHHcCCCC-----CC---------ccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 99999997521 1111111111000 00 0012233456889999999999999999999975
No 149
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=99.92 E-value=2e-25 Score=229.28 Aligned_cols=190 Identities=19% Similarity=0.313 Sum_probs=150.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||+++++++|.... .++++||+++|+|.+++......+++..+..++.++++||+|||..
T Consensus 62 ~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---- 136 (327)
T 3lzb_A 62 KEILDEAYVMASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---- 136 (327)
T ss_dssp HHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC----
Confidence 35667999999999999999999987654 6789999999999999987667799999999999999999999954
Q ss_pred CeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 527 PIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
+|+|+|+|+... .....||+.|+|||++.+..++.++|||||||++|||+| |
T Consensus 137 ~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g 216 (327)
T 3lzb_A 137 RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 216 (327)
T ss_dssp TCCCSCCCGGGEEEEETTEEEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred CCcCCCCCHHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCC
Confidence 799999995410 111235778999999998889999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||.... ...+...+....... .+......+.+++.+||+.||.+||++.|+++.|+++.
T Consensus 217 ~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 277 (327)
T 3lzb_A 217 SKPYDGIP--ASEISSILEKGERLP-----------------QPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMA 277 (327)
T ss_dssp CCTTTTCC--GGGHHHHHHTTCCCC-----------------CCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCC--HHHHHHHHHcCCCCC-----------------CCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 99997632 222333333221111 01122345789999999999999999999999999986
Q ss_pred HH
Q 040540 659 VK 660 (669)
Q Consensus 659 ~~ 660 (669)
..
T Consensus 278 ~~ 279 (327)
T 3lzb_A 278 RD 279 (327)
T ss_dssp TS
T ss_pred hC
Confidence 43
No 150
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.5e-23 Score=231.34 Aligned_cols=267 Identities=24% Similarity=0.293 Sum_probs=197.8
Q ss_pred CCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeec
Q 040540 75 SFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRA 154 (669)
Q Consensus 75 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 154 (669)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+|++|++++ +|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 46899999999998 6777665 79999999999998 5665 57899999999999984 555 7789999999
Q ss_pred ccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccc
Q 040540 155 EFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGR 234 (669)
Q Consensus 155 ~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (669)
++|.+++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|.+++. |. .+++|+.|++++|.++ .
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~ 175 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT-S 175 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-C
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC-C
Confidence 9999875 444 57889999999999885 5543 47899999999998864 43 3467889999999887 4
Q ss_pred cchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCccc
Q 040540 235 LPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQW 314 (669)
Q Consensus 235 ~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 314 (669)
+| ..+++|+.|++++|++.+ +|.. .++|+.|++++|.+.. +|. .+++|+.|++++|++++.+
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp------ 237 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP------ 237 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC------
T ss_pred Cc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC------
Confidence 66 246788889999888875 3432 4678888888888873 443 2467888888888777643
Q ss_pred ccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCch
Q 040540 315 SFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPH 394 (669)
Q Consensus 315 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~ 394 (669)
..+++|+.|++++|.++.. |. .+.+|..|++++|.++ .+|..+..+++|+.+++++|.+.+..|.
T Consensus 238 ------~~l~~L~~L~Ls~N~L~~l-p~-------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 238 ------VLPSELKELMVSGNRLTSL-PM-------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp ------CCCTTCCEEECCSSCCSCC-CC-------CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ------CCCCcCcEEECCCCCCCcC-Cc-------ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 2346778888888877643 22 2355666667766666 4556666666666666666666666655
Q ss_pred hhcC
Q 040540 395 DLCH 398 (669)
Q Consensus 395 ~~~~ 398 (669)
.+..
T Consensus 303 ~l~~ 306 (622)
T 3g06_A 303 ALRE 306 (622)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
No 151
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=99.92 E-value=1.2e-25 Score=232.97 Aligned_cols=186 Identities=20% Similarity=0.241 Sum_probs=139.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++... ..+++.+...++.++++||.|||..
T Consensus 93 ~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~L~~LH~~---- 167 (349)
T 2w4o_A 93 KIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVEK-GYYSERDAADAVKQILEAVAYLHEN---- 167 (349)
T ss_dssp ------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTTC-SSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 35667999999999999999999999988999999999999999999754 4589999999999999999999954
Q ss_pred CeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+++|+|+|+... .....||+.|+|||++.+..++.++|||||||++|||++|+
T Consensus 168 ~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~ 247 (349)
T 2w4o_A 168 GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGF 247 (349)
T ss_dssp TCCCCCCCGGGEEESSSSTTCCEEECCCC----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred CeEecCCCcccEEEecCCCCCCEEEccCccccccCcccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCC
Confidence 799999985310 11234899999999999888999999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||........ +...+...... ... +.+.+....+.+++.+|++.||++|||+.|+++
T Consensus 248 ~pf~~~~~~~~-~~~~i~~~~~~----~~~----------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 248 EPFYDERGDQF-MFRRILNCEYY----FIS----------PWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp CTTCCTTCHHH-HHHHHHTTCCC----CCT----------TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCCCCCcccHH-HHHHHHhCCCc----cCC----------chhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 99965322111 11111111000 000 011233456789999999999999999999986
No 152
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=99.92 E-value=1.2e-25 Score=227.51 Aligned_cols=193 Identities=17% Similarity=0.296 Sum_probs=148.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++...+..++||||+++|+|.+++... ..+++..+..++.++++|++|||..
T Consensus 56 ~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---- 130 (294)
T 4eqm_A 56 KRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESH-GPLSVDTAINFTNQILDGIKHAHDM---- 130 (294)
T ss_dssp HHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEEeCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 45678999999999999999999999888999999999999999999754 4689999999999999999999954
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+++|+|+|+.. ......||+.|+|||.+.+..++.++||||+||++|||+||+.
T Consensus 131 ~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~ 210 (294)
T 4eqm_A 131 RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEP 210 (294)
T ss_dssp TCCCCCCCGGGEEECTTSCEEECCCSSSTTC-------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSC
T ss_pred CcccCCCCHHHEEECCCCCEEEEeCCCccccccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCC
Confidence 79999999541 0111248999999999998889999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-CHHHHHHHHHHhHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-HMTDAAAKLKKIKV 659 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-s~~~v~~~l~~~~~ 659 (669)
||..... . .............. . .....+.+..+.+++.+|++.||.+|| +++++.+.|+.+..
T Consensus 211 pf~~~~~----~-~~~~~~~~~~~~~~-----~-----~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~ 275 (294)
T 4eqm_A 211 PFNGETA----V-SIAIKHIQDSVPNV-----T-----TDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLH 275 (294)
T ss_dssp SSCSSCH----H-HHHHHHHSSCCCCH-----H-----HHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSS
T ss_pred CCCCCCh----H-HHHHHHhhccCCCc-----c-----hhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHh
Confidence 9975321 1 11111111111000 0 001123345678999999999999999 99999999988753
No 153
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=99.92 E-value=6.7e-26 Score=243.34 Aligned_cols=190 Identities=23% Similarity=0.385 Sum_probs=148.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+.++..++|||++++++++.. ...++|||||++|+|.++++.. +..+++.++..++.++++||+|||.
T Consensus 224 ~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---- 298 (452)
T 1fmk_A 224 EAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---- 298 (452)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 457789999999999999999999876 6678999999999999999752 3458999999999999999999995
Q ss_pred CCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 526 APIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
.+++|||+|+.. ......++..|+|||++....++.++|||||||++|||+| |
T Consensus 299 ~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g 378 (452)
T 1fmk_A 299 MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKG 378 (452)
T ss_dssp TTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCeeCCCCChhhEEECCCCCEEECCCccceecCCCceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCC
Confidence 479999999531 0011235678999999988889999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||..... ..+...+...... +.+..++..+.+++.+||+.||++|||++++++.|+++.
T Consensus 379 ~~P~~~~~~--~~~~~~i~~~~~~-----------------~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~ 439 (452)
T 1fmk_A 379 RVPYPGMVN--REVLDQVERGYRM-----------------PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF 439 (452)
T ss_dssp CCSSTTCCH--HHHHHHHHTTCCC-----------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred CCCCCCCCH--HHHHHHHHcCCCC-----------------CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence 999875321 1122222221110 112233456789999999999999999999999999875
Q ss_pred HH
Q 040540 659 VK 660 (669)
Q Consensus 659 ~~ 660 (669)
..
T Consensus 440 ~~ 441 (452)
T 1fmk_A 440 TS 441 (452)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 154
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=99.92 E-value=1.6e-25 Score=231.01 Aligned_cols=192 Identities=21% Similarity=0.376 Sum_probs=151.3
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMI 510 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~ 510 (669)
+.+..|+..+..+ +|||++++++++...+..++||||+++|+|.+++.... ..+++.++..++.
T Consensus 85 ~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (334)
T 2pvf_A 85 SDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTY 164 (334)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCEeeEEEEEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHH
Confidence 3566789999999 89999999999999999999999999999999998643 2378999999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccc
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKC 563 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~ 563 (669)
++++||+|||.. +++|+|+|+.. ......||+.|+|||++.+..++.++
T Consensus 165 qi~~aL~~LH~~----~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~ 240 (334)
T 2pvf_A 165 QLARGMEYLASQ----KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQS 240 (334)
T ss_dssp HHHHHHHHHHHT----TEECSCCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHH
T ss_pred HHHHHHHHHHhC----CeeCCCCccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHH
Confidence 999999999954 79999998531 01112367789999999888899999
Q ss_pred cchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 564 DVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 564 Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
|||||||++|||+| |+.||.... ...+...+........ +..+...+.+++.+||+.||.
T Consensus 241 Di~slG~il~ellt~g~~p~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~dp~ 301 (334)
T 2pvf_A 241 DVWSFGVLMWEIFTLGGSPYPGIP--VEELFKLLKEGHRMDK-----------------PANCTNELYMMMRDCWHAVPS 301 (334)
T ss_dssp HHHHHHHHHHHHHTTSCCSSTTCC--HHHHHHHHHHTCCCCC-----------------CTTCCHHHHHHHHHHTCSSGG
T ss_pred HHHHHHHHHHHHHhCCCCCcCcCC--HHHHHHHHhcCCCCCC-----------------CccCCHHHHHHHHHHccCChh
Confidence 99999999999999 999986532 1122222222211110 112234578999999999999
Q ss_pred CCCCHHHHHHHHHHhHHHh
Q 040540 643 KRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 643 ~Rps~~~v~~~l~~~~~~~ 661 (669)
+||++.|+++.|+++....
T Consensus 302 ~Rps~~ell~~L~~l~~~~ 320 (334)
T 2pvf_A 302 QRPTFKQLVEDLDRILTLT 320 (334)
T ss_dssp GSCCHHHHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHhcc
Confidence 9999999999999987654
No 155
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.92 E-value=8.2e-27 Score=237.28 Aligned_cols=203 Identities=18% Similarity=0.278 Sum_probs=135.5
Q ss_pred Cchhhhhhcc--ccccccceecccccccc----ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 449 FDSECEVLRN--VRHRNLIKIISSCSNPD----FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 449 ~~~e~~~l~~--l~h~niv~l~~~~~~~~----~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+..|.+++.. ++|||++++++++.... ..++||||+++|+|.+++... .+++..+..++.+++.|++|||..
T Consensus 42 ~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~i~~~l~~lH~~ 119 (303)
T 3gxj_A 42 WFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHME 119 (303)
T ss_dssp HHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEEEEEECCTTCCHHHHHHHC--CBCC-CHHHHC-CHHHHHC-CCCC
T ss_pred HHHHHHHHHHHhccCcceeeeeeecccCCCccceeEEEEeccCCCCHHHHHhcc--CcchHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665 79999999999987765 678999999999999999753 477788899999999999999932
Q ss_pred C----CCCCeeecCCCCcc-----------------------------cccccccccccCccccccCC------CcCccc
Q 040540 523 H----SSAPIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEG------IVSAKC 563 (669)
Q Consensus 523 ~----~~~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~------~~~~~~ 563 (669)
. ...+++|||+|+.. ......||+.|+|||++.+. .++.++
T Consensus 120 ~~~~~~~~~ivH~Dlkp~Nil~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~ 199 (303)
T 3gxj_A 120 IVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRA 199 (303)
T ss_dssp BCSTTCBC-CCCSCCCGGGC-CCTTCCC-BCCCCC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHH
T ss_pred HhhhccCCCEeeCcCCHHHeEECCCCCEEEeecCcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcch
Confidence 1 14689999999531 00112589999999998765 455789
Q ss_pred cchhhHHHHHHHHhC----------CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHH
Q 040540 564 DVYSYGVLLMETFTR----------KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLA 633 (669)
Q Consensus 564 Dv~s~Gvil~el~tg----------~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 633 (669)
|||||||++|||+|| +.||..................... ..+.+.. .....+++..+.+++
T Consensus 200 DiwslG~il~el~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~l~~li 271 (303)
T 3gxj_A 200 DIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQK----LRPNIPN----RWQSCEALRVMAKIM 271 (303)
T ss_dssp HHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTTCC-CCCCC-CHHHHTTSC----CCCCCCG----GGGSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccccceeeccccccCCCCccHHHHHHHHHHhh----cCCCccc----cccchhhHHHHHHHH
Confidence 999999999999999 5666443221111111111111110 1111111 011336677899999
Q ss_pred hhcccCCCCCCCCHHHHHHHHHHhHHHh
Q 040540 634 LDCCMESPDKRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 634 ~~c~~~~P~~Rps~~~v~~~l~~~~~~~ 661 (669)
.+||+.||++|||+.||+++|+++.+..
T Consensus 272 ~~cl~~dP~~Rps~~~i~~~L~~l~~~~ 299 (303)
T 3gxj_A 272 RECWYANGAARLTALRIKKTLSQLSQQE 299 (303)
T ss_dssp HTTCCSSGGGSCCHHHHHHHHHC-CCC-
T ss_pred HHHhccCcccCCCHHHHHHHHHHhhhhc
Confidence 9999999999999999999999887553
No 156
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=99.92 E-value=2.3e-25 Score=229.44 Aligned_cols=197 Identities=13% Similarity=0.075 Sum_probs=152.6
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
..+..|+.++..+ +|+|++++++++......++||||+ +++|.+++......+++..+..|+.++++||+|||..
T Consensus 49 ~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~--- 124 (330)
T 2izr_A 49 PQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSK--- 124 (330)
T ss_dssp CCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC---
Confidence 3566899999999 9999999999998888899999999 8999999987566799999999999999999999954
Q ss_pred CCeeecCCCCcc-----------------------------c--------ccccccccccCccccccCCCcCccccchhh
Q 040540 526 APIIHCEGEDSV-----------------------------T--------QTTTMATIGYMAPEYGSEGIVSAKCDVYSY 568 (669)
Q Consensus 526 ~~i~h~d~~~~~-----------------------------~--------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~ 568 (669)
+|+|||+|+.. . .....||+.|+|||++.+..++.++|||||
T Consensus 125 -~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~sl 203 (330)
T 2izr_A 125 -NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEAL 203 (330)
T ss_dssp -TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHH
T ss_pred -CeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHH
Confidence 79999998430 0 023358999999999999889999999999
Q ss_pred HHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 569 GVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 569 Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
||++|||++|+.||....... ..+.......... ..... ......+ .+.+++.+||+.||.+||++.
T Consensus 204 G~il~ell~g~~Pf~~~~~~~--~~~~~~~i~~~~~------~~~~~----~~~~~~p-~~~~li~~~l~~~p~~RP~~~ 270 (330)
T 2izr_A 204 GHMFMYFLRGSLPWQGLKADT--LKERYQKIGDTKR------ATPIE----VLCENFP-EMATYLRYVRRLDFFEKPDYD 270 (330)
T ss_dssp HHHHHHHHHSSCTTTTCCCSS--HHHHHHHHHHHHH------HSCHH----HHTTTCH-HHHHHHHHHHHCCTTCCCCHH
T ss_pred HHHHHHHhcCCCCcccccccc--HHHHHHHHHhhhc------cCCHH----HHhccCh-HHHHHHHHHHhCCCCCCCCHH
Confidence 999999999999997643222 1111110000000 00000 0001122 788999999999999999999
Q ss_pred HHHHHHHHhHHHh
Q 040540 649 DAAAKLKKIKVKF 661 (669)
Q Consensus 649 ~v~~~l~~~~~~~ 661 (669)
+|.+.|+++..+.
T Consensus 271 ~l~~~l~~~~~~~ 283 (330)
T 2izr_A 271 YLRKLFTDLFDRK 283 (330)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999999887664
No 157
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=99.92 E-value=1.3e-25 Score=236.93 Aligned_cols=201 Identities=19% Similarity=0.238 Sum_probs=143.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+.+++.++||||+++++++...+..++|||||++|+|.+++... ...+++.....|+.|+++||+|||..
T Consensus 71 ~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~--- 147 (389)
T 3gni_B 71 TFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM--- 147 (389)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---
Confidence 34667999999999999999999999999999999999999999999763 24589999999999999999999954
Q ss_pred CCeeecCCCCcc--------------------------------cccccccccccCccccccC--CCcCccccchhhHHH
Q 040540 526 APIIHCEGEDSV--------------------------------TQTTTMATIGYMAPEYGSE--GIVSAKCDVYSYGVL 571 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------------------~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gvi 571 (669)
+|+|||+|+.. ......||+.|+|||++.+ ..++.++|||||||+
T Consensus 148 -~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~i 226 (389)
T 3gni_B 148 -GYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGIT 226 (389)
T ss_dssp -TEECCCCSGGGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHH
T ss_pred -CeecCCCCHHHEEEcCCCCEEEcccccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHH
Confidence 79999999541 0111258889999999887 569999999999999
Q ss_pred HHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCcc-------------------ccccccc--------cchhhhhhhhHH
Q 040540 572 LMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLS-------------------EVVDTNL--------VREEQAFSAKMD 624 (669)
Q Consensus 572 l~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~-------------------~~~~~~~--------~~~~~~~~~~~~ 624 (669)
+|||++|+.||........ +........+.... ......+ .......+.+..
T Consensus 227 l~el~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (389)
T 3gni_B 227 ACELANGHVPFKDMPATQM-LLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRT 305 (389)
T ss_dssp HHHHHHSSCTTTTCCSTTH-HHHC--------------------------------------------------------
T ss_pred HHHHHHCCCCCCCCCHHHH-HHHHhcCCCCccccccccccccccccccccccccccccccccCccccccCCCCCCccccc
Confidence 9999999999976332221 11111111100000 0000000 000011112334
Q ss_pred HHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 625 CLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 625 ~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
....+.+++.+||+.||++|||+.|+++
T Consensus 306 ~s~~~~~li~~~L~~dP~~Rpta~ell~ 333 (389)
T 3gni_B 306 FSPHFHHFVEQCLQRNPDARPSASTLLN 333 (389)
T ss_dssp CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred cCHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence 5567899999999999999999999985
No 158
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=99.92 E-value=4.4e-26 Score=227.94 Aligned_cols=190 Identities=25% Similarity=0.372 Sum_probs=144.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++......++||||+++++|.+++.. ..+++.....++.++++|++|||..+ ..
T Consensus 51 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~i~~~l~~~l~~lH~~~-~~ 127 (271)
T 3dtc_A 51 ENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSG--KRIPPDILVNWAVQIARGMNYLHDEA-IV 127 (271)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEEECCTTEEHHHHHTS--SCCCHHHHHHHHHHHHHHHHHHHHSS-SS
T ss_pred HHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEEcCCCCCHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhCC-CC
Confidence 3566789999999999999999999999899999999999999999964 46899999999999999999999652 12
Q ss_pred CeeecCCCCccc-------------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 527 PIIHCEGEDSVT-------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 527 ~i~h~d~~~~~~-------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
+++|+|+|+... .....||+.|+|||...+..++.++||||||+++|||
T Consensus 128 ~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l 207 (271)
T 3dtc_A 128 PIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWEL 207 (271)
T ss_dssp CCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHH
T ss_pred ceeecCCchHHEEEecccccccccCcceEEccCCcccccccccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHH
Confidence 499999985310 1122478999999999888899999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLK 655 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~ 655 (669)
+||+.||..... ......+... ... .. .+...+..+.+++.+||+.||++|||+.|+++.|+
T Consensus 208 ~~g~~p~~~~~~--~~~~~~~~~~---~~~----~~---------~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~ 269 (271)
T 3dtc_A 208 LTGEVPFRGIDG--LAVAYGVAMN---KLA----LP---------IPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLT 269 (271)
T ss_dssp HHCCCTTTTSCH--HHHHHHHHTS---CCC----CC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HhCCCCCCCCCH--HHHHHhhhcC---CCC----CC---------CCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHh
Confidence 999999975321 1111111110 000 00 01123356789999999999999999999999998
Q ss_pred Hh
Q 040540 656 KI 657 (669)
Q Consensus 656 ~~ 657 (669)
++
T Consensus 270 ~l 271 (271)
T 3dtc_A 270 TI 271 (271)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 159
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=99.92 E-value=5.9e-25 Score=225.35 Aligned_cols=194 Identities=19% Similarity=0.262 Sum_probs=149.2
Q ss_pred cccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 446 FRSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 446 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+.+..|+..+..++|+|++++++++......++||||+++++|.+++...+..+++..+..++.++++|++|||..
T Consensus 73 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~--- 149 (319)
T 2y4i_B 73 LKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAK--- 149 (319)
T ss_dssp CCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---
Confidence 34677899999999999999999999998889999999999999999987666789999999999999999999954
Q ss_pred CCeeecCCCCcc-----------------------------cccccccccccCccccccC---------CCcCccccchh
Q 040540 526 APIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSE---------GIVSAKCDVYS 567 (669)
Q Consensus 526 ~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~---------~~~~~~~Dv~s 567 (669)
+++|+|+++.. ......||+.|+|||++.. ..++.++||||
T Consensus 150 -~i~H~dlkp~NIl~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~s 228 (319)
T 2y4i_B 150 -GILHKDLKSKNVFYDNGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFA 228 (319)
T ss_dssp -TCCCCCCCSTTEEEC--CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHH
T ss_pred -CccccCCChhhEEEeCCCEEEeecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHH
Confidence 79999998541 0011238899999998764 34789999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 568 YGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|||++|||+||+.||..... ..+...+........ ... ..+..+.+++.+||..||++|||+
T Consensus 229 lG~il~el~~g~~p~~~~~~--~~~~~~~~~~~~~~~---~~~-------------~~~~~l~~li~~~l~~~p~~Rpt~ 290 (319)
T 2y4i_B 229 LGTIWYELHAREWPFKTQPA--EAIIWQMGTGMKPNL---SQI-------------GMGKEISDILLFCWAFEQEERPTF 290 (319)
T ss_dssp HHHHHHHHHHSSCSSSSCCH--HHHHHHHHTTCCCCC---CCS-------------SCCTTHHHHHHHHHCSSTTTSCCH
T ss_pred HHHHHHHHHhCCCCCCCCCH--HHHHHHhccCCCCCC---CcC-------------CCCHHHHHHHHHHhcCChhhCcCH
Confidence 99999999999999975321 111111111111110 000 112346799999999999999999
Q ss_pred HHHHHHHHHhHHHh
Q 040540 648 TDAAAKLKKIKVKF 661 (669)
Q Consensus 648 ~~v~~~l~~~~~~~ 661 (669)
.+++++|+++..+.
T Consensus 291 ~~l~~~l~~l~~~~ 304 (319)
T 2y4i_B 291 TKLMDMLEKLPKRN 304 (319)
T ss_dssp HHHHHHHTTC----
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987664
No 160
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=8.3e-24 Score=211.91 Aligned_cols=223 Identities=22% Similarity=0.241 Sum_probs=177.1
Q ss_pred EEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeeccccc
Q 040540 79 SLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNI 158 (669)
Q Consensus 79 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (669)
..+..+..+. .+|..+. ++|++|++++|++.+..+..|.++++|++|+|++|++++..+..+.++++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 4556666665 4666554 579999999999998777789999999999999999998888889999999999999999
Q ss_pred ccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC-CCccccCCCCCcEEEcccCCCccccch
Q 040540 159 IGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL-IPPTIFNISTMRILTLESNQLSGRLPS 237 (669)
Q Consensus 159 l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~ 237 (669)
+.+..+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+++. +|..+.++++|++|++++|.+++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 9988888999999999999999999887777899999999999999999874 588899999999999999998754444
Q ss_pred hhhccCCCCC----eeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCcccc
Q 040540 238 TIGHSLRNIE----YLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTT 306 (669)
Q Consensus 238 ~~~~~l~~L~----~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 306 (669)
.+. .+.+|+ +|++++|.+.+..+..+. ..+|+.|++++|.+.+..+..|..+++|+.|++++|.++.
T Consensus 168 ~~~-~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 168 DLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp GGH-HHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred Hhh-hhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 443 455555 777888887765554443 3467777777777776555556667777777777666543
No 161
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=99.92 E-value=9e-26 Score=233.25 Aligned_cols=203 Identities=20% Similarity=0.258 Sum_probs=140.7
Q ss_pred hhhhhccccccccceecccc-----ccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC---
Q 040540 452 ECEVLRNVRHRNLIKIISSC-----SNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH--- 523 (669)
Q Consensus 452 e~~~l~~l~h~niv~l~~~~-----~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~--- 523 (669)
++..+..++|+|++++++.+ ......++||||+++|+|.+++.... .++..+..|+.++++||+|||...
T Consensus 57 ~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~~L~~LH~~~~~~ 134 (336)
T 3g2f_A 57 NIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHT--SDWVSSCRLAHSVTRGLAYLHTELPRG 134 (336)
T ss_dssp HHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHHCCBCCG
T ss_pred HHHHHHhccCcchhhheecccccccCCCceEEEEEecCCCCcHHHHHhhcc--cchhHHHHHHHHHHHHHHHHHhhhccc
Confidence 33345568999999998743 22345689999999999999997543 588899999999999999999431
Q ss_pred --CCCCeeecCCCCcc--------------c-------------------ccccccccccCccccccC-------CCcCc
Q 040540 524 --SSAPIIHCEGEDSV--------------T-------------------QTTTMATIGYMAPEYGSE-------GIVSA 561 (669)
Q Consensus 524 --~~~~i~h~d~~~~~--------------~-------------------~~~~~gt~~y~aPE~~~~-------~~~~~ 561 (669)
..++|+|||+|+.. . .....||+.|+|||++.+ ..++.
T Consensus 135 ~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~ 214 (336)
T 3g2f_A 135 DHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALK 214 (336)
T ss_dssp GGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHH
T ss_pred cccccceeecccccceEEEcCCCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCccccccccccc
Confidence 12289999999531 0 012248999999999876 45678
Q ss_pred cccchhhHHHHHHHHhCCCCCCcCCCC-Cc--c----------HHHHHHHhCCCCccccccccccchhhhhhhhHHHHHH
Q 040540 562 KCDVYSYGVLLMETFTRKRPTDEMFTG-EM--S----------LRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLS 628 (669)
Q Consensus 562 ~~Dv~s~Gvil~el~tg~~p~~~~~~~-~~--~----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (669)
++|||||||++|||+||+.|+...... .. . ...+.......... +.+.. .......++..
T Consensus 215 ~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~ 287 (336)
T 3g2f_A 215 QVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQR----PKFPE---AWKENSLAVRS 287 (336)
T ss_dssp HHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCC----CCCCT---TCCCCSHHHHH
T ss_pred ccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccC----CCCCc---ccccccchHHH
Confidence 999999999999999998776432211 10 0 00000000000000 11100 01112345667
Q ss_pred HHHHHhhcccCCCCCCCCHHHHHHHHHHhHHHhhh
Q 040540 629 IMDLALDCCMESPDKRMHMTDAAAKLKKIKVKFLD 663 (669)
Q Consensus 629 ~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~~~~~ 663 (669)
+.+++.+||+.||++|||+.||++.|+++...+.+
T Consensus 288 l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~ 322 (336)
T 3g2f_A 288 LKETIEDCWDQDAEARLTAQXAEERMAELMMIWER 322 (336)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999876543
No 162
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=99.92 E-value=6.3e-25 Score=225.08 Aligned_cols=206 Identities=20% Similarity=0.207 Sum_probs=149.9
Q ss_pred cCchhhhhhccccccccceecccccccc--ccceeeccCCCCChHHhhhcCCC--ccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPD--FKALVLEFMPNGSLEKWLYSHNY--FLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv~ey~~~g~L~~~l~~~~~--~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+..|+.++..++|||++++++++.... ..++||||+++|+|.+++..... .+++.....++.++++||+|||..
T Consensus 53 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~- 131 (319)
T 4euu_A 53 VQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN- 131 (319)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence 4557899999999999999999887654 66899999999999999986332 389999999999999999999954
Q ss_pred CCCCeeecCCCCccc----------------------------ccccccccccCcccccc--------CCCcCccccchh
Q 040540 524 SSAPIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGS--------EGIVSAKCDVYS 567 (669)
Q Consensus 524 ~~~~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~--------~~~~~~~~Dv~s 567 (669)
+|+|+|+|+... .....||+.|+|||++. +..++.++||||
T Consensus 132 ---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~Diws 208 (319)
T 4euu_A 132 ---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWS 208 (319)
T ss_dssp ---TEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHH
T ss_pred ---CEecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHH
Confidence 799999985411 11234899999999875 467899999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCC--ccHHHHHHHhCCCC-ccccc---ccccc---chhhhhhhhHHHHHHHHHHHhhccc
Q 040540 568 YGVLLMETFTRKRPTDEMFTGE--MSLRRWVKESLPHR-LSEVV---DTNLV---REEQAFSAKMDCLLSIMDLALDCCM 638 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~--~~l~~~~~~~~~~~-~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~l~~~c~~ 638 (669)
|||++|||+||+.||....... ..+..-+....+.. +...- ...+. ...............+.+++.+|++
T Consensus 209 lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~ 288 (319)
T 4euu_A 209 IGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILE 288 (319)
T ss_dssp HHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhcc
Confidence 9999999999999996532211 12222222222221 11110 00000 0000112245667788999999999
Q ss_pred CCCCCCCCHHHHHHHHHHh
Q 040540 639 ESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 639 ~~P~~Rps~~~v~~~l~~~ 657 (669)
.||++|||+.|+++...+.
T Consensus 289 ~dP~~R~s~~ell~h~~d~ 307 (319)
T 4euu_A 289 ADQEKCWGFDQFFAETSDI 307 (319)
T ss_dssp CCTTTSCCHHHHHHHHHHH
T ss_pred CChhhhccHHHhhhccHHH
Confidence 9999999999999877654
No 163
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=99.92 E-value=3.8e-25 Score=226.07 Aligned_cols=194 Identities=20% Similarity=0.365 Sum_probs=148.3
Q ss_pred ccCchhhhhhccccccccceecccccccc-----ccceeeccCCCCChHHhhhc-----CCCccCHHHHHHHHHhHHhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD-----FKALVLEFMPNGSLEKWLYS-----HNYFLDILERLNIMIDVGSAL 516 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----~~~lv~ey~~~g~L~~~l~~-----~~~~l~~~~~~~i~~~i~~~l 516 (669)
+.+..|+..+..++|||++++++++.... ..++||||+++|+|.+++.. ....+++..+..++.++++||
T Consensus 81 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL 160 (313)
T 3brb_A 81 EEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGM 160 (313)
T ss_dssp HHHHHHHHHHHTCCCTTBCCCCEEEEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHH
Confidence 45677999999999999999999987644 34899999999999999853 235689999999999999999
Q ss_pred hhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhH
Q 040540 517 EYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYG 569 (669)
Q Consensus 517 ~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G 569 (669)
.|||. .+++|+|+|+.. ......|++.|+|||...+..++.++||||||
T Consensus 161 ~~LH~----~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG 236 (313)
T 3brb_A 161 EYLSN----RNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFG 236 (313)
T ss_dssp HHHHT----TTCCCCCCSGGGEEECTTSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHH
T ss_pred HHHHh----CCcccCCCCcceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHH
Confidence 99994 479999999541 00112367789999999888899999999999
Q ss_pred HHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 570 VLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 570 vil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
+++|||+| |+.||.... ...+...+........ +...+..+.+++.+||..||++|||+.
T Consensus 237 ~il~el~~~g~~p~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~dp~~Rps~~ 297 (313)
T 3brb_A 237 VTMWEIATRGMTPYPGVQ--NHEMYDYLLHGHRLKQ-----------------PEDCLDELYEIMYSCWRTDPLDRPTFS 297 (313)
T ss_dssp HHHHHHHTTSCCSSTTCC--GGGHHHHHHTTCCCCC-----------------BTTCCHHHHHHHHHTTCSSGGGSCCHH
T ss_pred HHHHHHHhcCCCCCccCC--HHHHHHHHHcCCCCCC-----------------CccccHHHHHHHHHHcCCChhhCcCHH
Confidence 99999999 888986532 2223332222211100 112334678999999999999999999
Q ss_pred HHHHHHHHhHHHhhh
Q 040540 649 DAAAKLKKIKVKFLD 663 (669)
Q Consensus 649 ~v~~~l~~~~~~~~~ 663 (669)
++++.|+++...+++
T Consensus 298 ~l~~~L~~l~~~lp~ 312 (313)
T 3brb_A 298 VLRLQLEKLLESLPD 312 (313)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999877653
No 164
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=99.92 E-value=8.3e-26 Score=234.18 Aligned_cols=197 Identities=13% Similarity=0.100 Sum_probs=148.3
Q ss_pred cCchhhhhhccccccccceecccccc----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+..|+..+..++|+|++++++++.. ....++||||+ +++|.+++...+ .+++.++..|+.|+++||+|||..
T Consensus 94 ~~~~e~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH~~- 170 (345)
T 2v62_A 94 DCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYIHEN- 170 (345)
T ss_dssp HHHHHHHHHHTCSCCCCCCEEEEEEEESSSCEEEEEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhccccccCcceeecccccccCCCcEEEEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhC-
Confidence 35567788888999999999999877 67789999999 999999998644 789999999999999999999954
Q ss_pred CCCCeeecCCCCccc----------------------------------ccccccccccCccccccCCCcCccccchhhH
Q 040540 524 SSAPIIHCEGEDSVT----------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYG 569 (669)
Q Consensus 524 ~~~~i~h~d~~~~~~----------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~G 569 (669)
+|+|||+|+... .....||+.|+|||++.+..++.++||||||
T Consensus 171 ---~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG 247 (345)
T 2v62_A 171 ---EYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILG 247 (345)
T ss_dssp ---TEECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHH
T ss_pred ---CeeCCCcCHHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHH
Confidence 899999984300 0223589999999999988899999999999
Q ss_pred HHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 570 VLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 570 vil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|++|||+||+.||.........+........ ......+... ......+..+.+++.+||..||++||++.+
T Consensus 248 ~il~ell~g~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ 318 (345)
T 2v62_A 248 YCMLRWLCGKLPWEQNLKDPVAVQTAKTNLL-DELPQSVLKW--------APSGSSCCEIAQFLVCAHSLAYDEKPNYQA 318 (345)
T ss_dssp HHHHHHHHSSCTTGGGTTCHHHHHHHHHHHH-HTTTHHHHHH--------SCTTSCCHHHHHHHHHHHTCCTTCCCCHHH
T ss_pred HHHHHHHhCCCCccccccccHHHHHHHHhhc-ccccHHHHhh--------ccccccHHHHHHHHHHHhhcCcccCCCHHH
Confidence 9999999999999653322222211111110 0000000000 000133457889999999999999999999
Q ss_pred HHHHHHHhHH
Q 040540 650 AAAKLKKIKV 659 (669)
Q Consensus 650 v~~~l~~~~~ 659 (669)
|++.|+++..
T Consensus 319 l~~~L~~~~~ 328 (345)
T 2v62_A 319 LKKILNPHGI 328 (345)
T ss_dssp HHHHHCTTCC
T ss_pred HHHHHhccCC
Confidence 9999987643
No 165
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=99.91 E-value=3.1e-25 Score=228.15 Aligned_cols=180 Identities=20% Similarity=0.177 Sum_probs=142.6
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|..++..++|||++++++++...+..++||||+++|+|.+++... ..+++.....++.+++.||+|||.. +
T Consensus 51 ~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~----~ 125 (337)
T 1o6l_A 51 HTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE-RVFTEERARFYGAEIVSALEYLHSR----D 125 (337)
T ss_dssp HHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 4567888999999999999999999999999999999999999999753 4588999999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+.. .....+||+.|+|||++.+..++.++||||+||++|||++|+.||
T Consensus 126 ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf 205 (337)
T 1o6l_A 126 VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPF 205 (337)
T ss_dssp CBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred eecCcCCHHHEEECCCCCEEEeeccchhhcccCCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCC
Confidence 9999999530 112345999999999999988999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
.... ...+...+.... ... +......+.+++.+|++.||.+|| +++||++
T Consensus 206 ~~~~--~~~~~~~i~~~~-~~~-----------------p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 206 YNQD--HERLFELILMEE-IRF-----------------PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp CCSS--HHHHHHHHHHCC-CCC-----------------CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred CCCC--HHHHHHHHHcCC-CCC-----------------CCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 6532 111211111110 000 112234578999999999999999 8888865
No 166
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=99.91 E-value=1.8e-25 Score=249.06 Aligned_cols=190 Identities=20% Similarity=0.324 Sum_probs=148.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++||||++++++|.. +..++|||||++|+|.+++... ..+++..+..|+.++++||+|||..
T Consensus 415 ~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~g~L~~~l~~~-~~l~~~~~~~i~~qi~~~L~yLH~~---- 488 (635)
T 4fl3_A 415 DELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAELGPLNKYLQQN-RHVKDKNIIELVHQVSMGMKYLEES---- 488 (635)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTTEEHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCCCCHHHHHhhC-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 457789999999999999999999864 4568999999999999999753 4689999999999999999999954
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+|+|||+|+.. ......||+.|+|||++....++.++|||||||++|||+|
T Consensus 489 ~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~ 568 (635)
T 4fl3_A 489 NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSY 568 (635)
T ss_dssp TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhC
Confidence 79999999541 0111235678999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||..... ..+...+....... .+..++..+.+++.+||+.||++||++.+|++.|+++
T Consensus 569 G~~Pf~~~~~--~~~~~~i~~~~~~~-----------------~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 629 (635)
T 4fl3_A 569 GQKPYRGMKG--SEVTAMLEKGERMG-----------------CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 629 (635)
T ss_dssp TCCSSTTCCH--HHHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCH--HHHHHHHHcCCCCC-----------------CCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 9999976322 12222222221110 1223345678999999999999999999999999987
Q ss_pred HHHh
Q 040540 658 KVKF 661 (669)
Q Consensus 658 ~~~~ 661 (669)
...+
T Consensus 630 ~~~l 633 (635)
T 4fl3_A 630 YYDV 633 (635)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 167
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=99.91 E-value=6.4e-26 Score=230.59 Aligned_cols=201 Identities=20% Similarity=0.357 Sum_probs=147.9
Q ss_pred ccCchhhhhhccccccccceeccccccc--cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+..+..++|+|++++++++... ...++||||+++|+|.+++......+++..+..++.++++|++|||.
T Consensus 68 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~--- 144 (302)
T 4e5w_A 68 ADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGS--- 144 (302)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhc---
Confidence 4566799999999999999999998775 56789999999999999997666678999999999999999999995
Q ss_pred CCCeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+|+.. ......||..|+|||++.+..++.++||||+|+++|||+
T Consensus 145 -~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~ 223 (302)
T 4e5w_A 145 -RQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELL 223 (302)
T ss_dssp -TTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHH
T ss_pred -CCcccCCCchheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHH
Confidence 479999999541 011224777899999998888999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCcccc---ccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEV---VDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
||+.|+.... ..+.....+...... +...+ ....+.+.+...+..+.+++.+||+.||.+|||+.|++++
T Consensus 224 ~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 296 (302)
T 4e5w_A 224 TYCDSDSSPM------ALFLKMIGPTHGQMTVTRLVNTL-KEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEG 296 (302)
T ss_dssp TTTCGGGSHH------HHHHHHHCSCCGGGHHHHHHHHH-HTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred HccCCCcchh------hHHhhccCCcccccCHHHHHHHH-hccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence 9999864311 111110000000000 00000 0000011122344568899999999999999999999999
Q ss_pred HHHhH
Q 040540 654 LKKIK 658 (669)
Q Consensus 654 l~~~~ 658 (669)
|+++.
T Consensus 297 L~~ll 301 (302)
T 4e5w_A 297 FEALL 301 (302)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99874
No 168
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=99.91 E-value=5.7e-26 Score=233.54 Aligned_cols=205 Identities=23% Similarity=0.392 Sum_probs=149.5
Q ss_pred ccCchhhhhhccccccccceecccccccc--ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD--FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+..+..++|+|++++++++.... ..++||||+++|+|.+++......+++.++..++.++++||+|||.
T Consensus 87 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~--- 163 (326)
T 2w1i_A 87 RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT--- 163 (326)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEECC----CCEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh---
Confidence 45678999999999999999999886643 6789999999999999998766678999999999999999999995
Q ss_pred CCCeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+|+... .....|+..|+|||...+..++.++|||||||++|||+
T Consensus 164 -~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~ 242 (326)
T 2w1i_A 164 -KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELF 242 (326)
T ss_dssp -TTEECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHH
T ss_pred -CCEeccCCCcceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHH
Confidence 4899999995410 01123667799999998888999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCcccccccc---ccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTN---LVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
||+.|+.... ..+.+.............. ......+.+.+..++..+.+++.+||+.||++|||+.|+++.
T Consensus 243 tg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~ 316 (326)
T 2w1i_A 243 TYIEKSKSPP------AEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALR 316 (326)
T ss_dssp HTTCGGGSHH------HHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred hcCCCCCCCH------HHHHHhhccccchhhhHHHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence 9999875321 0000000000000000000 000000001122344568899999999999999999999999
Q ss_pred HHHhHHHh
Q 040540 654 LKKIKVKF 661 (669)
Q Consensus 654 l~~~~~~~ 661 (669)
|+++++.+
T Consensus 317 L~~l~~~l 324 (326)
T 2w1i_A 317 VDQIRDQM 324 (326)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
No 169
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=99.91 E-value=3.1e-25 Score=228.20 Aligned_cols=192 Identities=25% Similarity=0.406 Sum_probs=150.2
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCC---------------CccCHHHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------------YFLDILERLNIMI 510 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------~~l~~~~~~~i~~ 510 (669)
+.+..|+.++..+ +|||++++++++...+..++||||+++|+|.+++.... ..+++..+..++.
T Consensus 70 ~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 149 (327)
T 1fvr_A 70 RDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 149 (327)
T ss_dssp CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCchhhhceeeeeCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHH
Confidence 4567799999999 89999999999998889999999999999999997643 3689999999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccch
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVY 566 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~ 566 (669)
++++||+|||. .+++|+|+|+.. ......+++.|+|||++.+..++.++|||
T Consensus 150 qi~~aL~~LH~----~~ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~ 225 (327)
T 1fvr_A 150 DVARGMDYLSQ----KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVW 225 (327)
T ss_dssp HHHHHHHHHHH----TTEECSCCSGGGEEECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHH
T ss_pred HHHHHHHHHHh----CCccCCCCccceEEEcCCCeEEEcccCcCccccccccccCCCCCccccChhhhccccCCchhcch
Confidence 99999999995 489999999541 01112367889999999888899999999
Q ss_pred hhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 567 SYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 567 s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
||||++|||+| |+.||..... ..+...+..... .. .+......+.+++.+||+.||++||
T Consensus 226 slG~il~ellt~g~~pf~~~~~--~~~~~~~~~~~~--------~~---------~~~~~~~~l~~li~~~l~~dp~~Rp 286 (327)
T 1fvr_A 226 SYGVLLWEIVSLGGTPYCGMTC--AELYEKLPQGYR--------LE---------KPLNCDDEVYDLMRQCWREKPYERP 286 (327)
T ss_dssp HHHHHHHHHHTTSCCTTTTCCH--HHHHHHGGGTCC--------CC---------CCTTBCHHHHHHHHHHTCSSGGGSC
T ss_pred HHHHHHHHHHcCCCCCCCCCcH--HHHHHHhhcCCC--------CC---------CCCCCCHHHHHHHHHHccCChhhCc
Confidence 99999999998 9999865321 111111111100 00 0112335678999999999999999
Q ss_pred CHHHHHHHHHHhHHHh
Q 040540 646 HMTDAAAKLKKIKVKF 661 (669)
Q Consensus 646 s~~~v~~~l~~~~~~~ 661 (669)
|+.|+++.|+++....
T Consensus 287 s~~ell~~L~~~~~~~ 302 (327)
T 1fvr_A 287 SFAQILVSLNRMLEER 302 (327)
T ss_dssp CHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999987653
No 170
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=99.91 E-value=2e-25 Score=229.14 Aligned_cols=193 Identities=18% Similarity=0.321 Sum_probs=150.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC---------CccCHHHHHHHHHhHHhhhhh
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN---------YFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------~~l~~~~~~~i~~~i~~~l~~ 518 (669)
.+..|+..+..++|+|++++++++......++||||+++|+|.+++...+ ..+++..+..++.++++||+|
T Consensus 74 ~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~ 153 (322)
T 1p4o_A 74 EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAY 153 (322)
T ss_dssp HHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEeeeEEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 46679999999999999999999998889999999999999999997521 346889999999999999999
Q ss_pred hhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHH
Q 040540 519 LRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
||.. +++|+|+|+.. ......||+.|+|||++.+..++.++||||+||+
T Consensus 154 lH~~----~i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i 229 (322)
T 1p4o_A 154 LNAN----KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVV 229 (322)
T ss_dssp HHHT----TCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHC----CCccCCCccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHH
Confidence 9954 79999998531 0011236788999999988889999999999999
Q ss_pred HHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 572 LMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 572 l~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
+|||+| |+.||.... ...+...+....... .+...+..+.+++.+||+.||.+|||+.|+
T Consensus 230 l~el~~~g~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dp~~Rps~~e~ 290 (322)
T 1p4o_A 230 LWEIATLAEQPYQGLS--NEQVLRFVMEGGLLD-----------------KPDNCPDMLFELMRMCWQYNPKMRPSFLEI 290 (322)
T ss_dssp HHHHHHTSCCTTTTSC--HHHHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHHHHhcCCCccccCC--HHHHHHHHHcCCcCC-----------------CCCCCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence 999999 888986532 112222222111000 011233457899999999999999999999
Q ss_pred HHHHHHhHHHhhh
Q 040540 651 AAKLKKIKVKFLD 663 (669)
Q Consensus 651 ~~~l~~~~~~~~~ 663 (669)
++.|+++.....+
T Consensus 291 l~~L~~~~~~~~~ 303 (322)
T 1p4o_A 291 ISSIKEEMEPGFR 303 (322)
T ss_dssp HHHHGGGSCTTHH
T ss_pred HHHHHHhhccCCc
Confidence 9999987554443
No 171
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=99.91 E-value=2.5e-25 Score=228.50 Aligned_cols=192 Identities=19% Similarity=0.376 Sum_probs=146.9
Q ss_pred ccCchhhhhhccccccccceecccccccccc------ceeeccCCCCChHHhhhcC-----CCccCHHHHHHHHHhHHhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFK------ALVLEFMPNGSLEKWLYSH-----NYFLDILERLNIMIDVGSA 515 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~------~lv~ey~~~g~L~~~l~~~-----~~~l~~~~~~~i~~~i~~~ 515 (669)
+.+..|+..+..++|||++++++++...... ++||||+++|+|.+++... ...+++..+..++.++++|
T Consensus 70 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~a 149 (323)
T 3qup_A 70 EEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACG 149 (323)
T ss_dssp HHHHHHHHHHTTCCCTTBCCCCEEEECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCceehhhceeeccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHH
Confidence 4567899999999999999999998776554 8999999999999999642 2258999999999999999
Q ss_pred hhhhhcCCCCCCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhh
Q 040540 516 LEYLRHGHSSAPIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSY 568 (669)
Q Consensus 516 l~~lh~~~~~~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~ 568 (669)
++|||.. +++|+|+|+... .....|++.|+|||.+.+..++.++|||||
T Consensus 150 l~~LH~~----~ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl 225 (323)
T 3qup_A 150 MEYLSSR----NFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAF 225 (323)
T ss_dssp HHHHHHT----TCCCSCCSGGGEEECTTSCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHcC----CcccCCCCcceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhH
Confidence 9999954 799999995410 011235678999999988889999999999
Q ss_pred HHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 569 GVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 569 Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
||++|||+| |+.||.... ...+...+....... .+...+..+.+++.+||+.||++|||+
T Consensus 226 G~il~ell~~g~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dp~~Rps~ 286 (323)
T 3qup_A 226 GVTMWEIMTRGQTPYAGIE--NAEIYNYLIGGNRLK-----------------QPPECMEEVYDLMYQCWSADPKQRPSF 286 (323)
T ss_dssp HHHHHHHHTTSCCTTTTCC--GGGHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHTTCSSGGGSCCH
T ss_pred HHHHHHHHhCCCCCccccC--hHHHHHHHhcCCCCC-----------------CCCccCHHHHHHHHHHccCChhhCcCH
Confidence 999999999 899987632 222222222211100 011233467899999999999999999
Q ss_pred HHHHHHHHHhHHHh
Q 040540 648 TDAAAKLKKIKVKF 661 (669)
Q Consensus 648 ~~v~~~l~~~~~~~ 661 (669)
.++++.|+++....
T Consensus 287 ~~l~~~l~~~l~~~ 300 (323)
T 3qup_A 287 TCLRMELENILGHL 300 (323)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
No 172
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=99.91 E-value=3.5e-25 Score=226.04 Aligned_cols=195 Identities=21% Similarity=0.238 Sum_probs=149.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
..+..|+..+..++|+|++++++++...+..++||||+++|+|.+++.. ....+++.....++.++++|+.|||..
T Consensus 77 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~- 155 (310)
T 2wqm_A 77 ADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR- 155 (310)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC-
Confidence 3566799999999999999999999988899999999999999999964 345689999999999999999999954
Q ss_pred CCCCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 524 SSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 524 ~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+++.. ......||+.|+|||++.+..++.++||||||+++|||++|
T Consensus 156 ---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g 232 (310)
T 2wqm_A 156 ---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAAL 232 (310)
T ss_dssp ---TCCCCCCCGGGEEECTTSCEEECCC------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred ---CeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhC
Confidence 79999998531 01122488999999999888899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||.........+...+... ... ... .......+.+++.+||..||++|||+.+|++.|++++
T Consensus 233 ~~p~~~~~~~~~~~~~~~~~~---~~~-----~~~--------~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~ 296 (310)
T 2wqm_A 233 QSPFYGDKMNLYSLCKKIEQC---DYP-----PLP--------SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMH 296 (310)
T ss_dssp SCTTC---CCHHHHHHHHHTT---CSC-----CCC--------TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCcccchhHHHHHHHhhcc---cCC-----CCc--------ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 999865322221222222111 100 000 1122345789999999999999999999999999998
Q ss_pred HHh
Q 040540 659 VKF 661 (669)
Q Consensus 659 ~~~ 661 (669)
+..
T Consensus 297 ~~~ 299 (310)
T 2wqm_A 297 ACT 299 (310)
T ss_dssp HHH
T ss_pred Hhh
Confidence 764
No 173
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=99.91 E-value=4.4e-25 Score=227.05 Aligned_cols=191 Identities=21% Similarity=0.352 Sum_probs=150.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC------CccCHHHHHHHHHhHHhhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN------YFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~------~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
..+..|+..+..++|||++++++++......++||||+++|+|.+++.... ..+++.++..++.++++|+.|||
T Consensus 78 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH 157 (327)
T 2yfx_A 78 LDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE 157 (327)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh
Confidence 356678999999999999999999999888999999999999999998643 34889999999999999999999
Q ss_pred cCCCCCCeeecCCCCccc------------------------------ccccccccccCccccccCCCcCccccchhhHH
Q 040540 521 HGHSSAPIIHCEGEDSVT------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGV 570 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~~------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gv 570 (669)
.. +++|+|+++... .....||+.|+|||++.+..++.++|||||||
T Consensus 158 ~~----~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ 233 (327)
T 2yfx_A 158 EN----HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGV 233 (327)
T ss_dssp HT----TCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHH
T ss_pred hC----CeecCcCCHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHH
Confidence 54 799999985310 01124678899999998888999999999999
Q ss_pred HHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 571 LLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 571 il~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
++|||+| |+.||.... ...+...+........ +......+.+++.+||+.||.+||++.|
T Consensus 234 il~ellt~g~~p~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~dp~~Rps~~~ 294 (327)
T 2yfx_A 234 LLWEIFSLGYMPYPSKS--NQEVLEFVTSGGRMDP-----------------PKNCPGPVYRIMTQCWQHQPEDRPNFAI 294 (327)
T ss_dssp HHHHHHTTSCCSSTTCC--HHHHHHHHHTTCCCCC-----------------CTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred HHHHHHcCCCCCCCCcC--HHHHHHHHhcCCCCCC-----------------CCCCCHHHHHHHHHHhcCChhhCcCHHH
Confidence 9999999 999986532 1222333322211100 1122345789999999999999999999
Q ss_pred HHHHHHHhHHH
Q 040540 650 AAAKLKKIKVK 660 (669)
Q Consensus 650 v~~~l~~~~~~ 660 (669)
+++.|+.+...
T Consensus 295 ll~~l~~~~~~ 305 (327)
T 2yfx_A 295 ILERIEYCTQD 305 (327)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999988654
No 174
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=99.91 E-value=2.3e-25 Score=225.12 Aligned_cols=192 Identities=20% Similarity=0.329 Sum_probs=150.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++ .....++||||+++++|.+++... ..+++.....++.++++|++|||..
T Consensus 63 ~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH~~---- 136 (291)
T 1xbb_A 63 DELLAEANVMQQLDNPYIVRMIGIC-EAESWMLVMEMAELGPLNKYLQQN-RHVKDKNIIELVHQVSMGMKYLEES---- 136 (291)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEEEEEECCTTEEHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcEEEEEeCCCCCHHHHHHhC-cCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 4567899999999999999999998 455678999999999999999864 4589999999999999999999954
Q ss_pred CeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+++|+|+++... .....||+.|+|||.+.+..++.++||||||+++|||+|
T Consensus 137 ~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~ 216 (291)
T 1xbb_A 137 NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSY 216 (291)
T ss_dssp TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTT
T ss_pred CeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhc
Confidence 799999995410 011125678999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||.... ...+...+....... .+...+..+.+++.+||+.||++||++.++++.|+++
T Consensus 217 g~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 277 (291)
T 1xbb_A 217 GQKPYRGMK--GSEVTAMLEKGERMG-----------------CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 277 (291)
T ss_dssp TCCSSTTCC--HHHHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CCCCCCCCC--HHHHHHHHHcCCCCC-----------------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 999987532 222233322221110 0112345678999999999999999999999999998
Q ss_pred HHHhhh
Q 040540 658 KVKFLD 663 (669)
Q Consensus 658 ~~~~~~ 663 (669)
-....+
T Consensus 278 ~~~~~~ 283 (291)
T 1xbb_A 278 YYDVVN 283 (291)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 776544
No 175
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=99.91 E-value=2.9e-25 Score=224.05 Aligned_cols=191 Identities=21% Similarity=0.335 Sum_probs=152.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+..+..++|+|++++++++......++||||+++|+|.+++... ...+++..+..++.++++|++|||..
T Consensus 54 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--- 130 (288)
T 3kfa_A 54 EEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK--- 130 (288)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC---
Confidence 45678999999999999999999999988999999999999999999763 34689999999999999999999954
Q ss_pred CCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 526 APIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
+++|+|+++.. ......||+.|+|||+..+..++.++||||+|+++|||++ |
T Consensus 131 -~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g 209 (288)
T 3kfa_A 131 -NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 209 (288)
T ss_dssp -TCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred -CccCCCCCcceEEEcCCCCEEEccCccceeccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCC
Confidence 79999999541 0111236778999999988889999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||.... ...+...+....... .+...+..+.+++.+|+..||.+|||+.|+++.|+++.
T Consensus 210 ~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~ 270 (288)
T 3kfa_A 210 MSPYPGID--LSQVYELLEKDYRME-----------------RPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF 270 (288)
T ss_dssp CCSSTTCC--GGGHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCC--HHHHHHHHhccCCCC-----------------CCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHH
Confidence 99987532 222333332221110 01123356789999999999999999999999999886
Q ss_pred HH
Q 040540 659 VK 660 (669)
Q Consensus 659 ~~ 660 (669)
..
T Consensus 271 ~~ 272 (288)
T 3kfa_A 271 QE 272 (288)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 176
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=5.1e-24 Score=212.74 Aligned_cols=203 Identities=20% Similarity=0.214 Sum_probs=120.3
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
.++.|+++++.+.. + +.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..++++++|++|+|+
T Consensus 42 ~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 45666666666542 1 2355666666666666666542 356666666666666666665555556666666666666
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCC
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLI 211 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 211 (669)
+|++++..+..+.++++|++|++++|.+++..+..++.+++|++|++++|++++..+..++.+++|++|++++|.+++..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 66666555555666666666666666666555555566666666666666666555555566666666666666666555
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccC
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITN 266 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 266 (669)
|..+..+++|+.|++++|.+.+ .++++++|+++.|++.|.+|.+++.
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred HHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCcccc
Confidence 5555556666666666665543 2334555555555555555554443
No 177
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=99.91 E-value=5.8e-25 Score=224.29 Aligned_cols=199 Identities=20% Similarity=0.201 Sum_probs=145.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++......++||||++ |++.+++......+++.....++.++++||+|||. .+
T Consensus 65 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~----~~ 139 (311)
T 3niz_A 65 TAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEFME-KDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQ----HR 139 (311)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEECCS-EEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcCCC-CCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 45679999999999999999999999899999999998 58999888766678999999999999999999995 48
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
|+|+|+|+.. ......||+.|+|||++.+ ..++.++||||+||++|||++|+.|
T Consensus 140 ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p 219 (311)
T 3niz_A 140 ILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPL 219 (311)
T ss_dssp EECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred cccCCCchHhEEECCCCCEEEccCcCceecCCCcccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCC
Confidence 9999999531 0112358999999999876 5689999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhC---CCCccccccc--------cccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESL---PHRLSEVVDT--------NLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
|....... .+.......- +..+....+. .................++.+++.+|++.||++|||++|+
T Consensus 220 f~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el 298 (311)
T 3niz_A 220 FPGVTDDD-QLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDA 298 (311)
T ss_dssp CCCSSTTT-HHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred CCCCChHH-HHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHH
Confidence 97643222 2222222111 1111110000 0000000000111234567899999999999999999999
Q ss_pred HH
Q 040540 651 AA 652 (669)
Q Consensus 651 ~~ 652 (669)
++
T Consensus 299 l~ 300 (311)
T 3niz_A 299 MN 300 (311)
T ss_dssp HT
T ss_pred hc
Confidence 75
No 178
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=99.91 E-value=2.7e-25 Score=228.34 Aligned_cols=179 Identities=19% Similarity=0.275 Sum_probs=141.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+.+|+..+..++|||++++++++..+...++||||+ +|+|.+++... ..+++.+...++.+++.|+.|||.. +
T Consensus 55 ~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~E~~-~g~l~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH~~----g 128 (336)
T 3h4j_B 55 RVEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEYA-GGELFDYIVEK-KRMTEDEGRRFFQQIICAIEYCHRH----K 128 (336)
T ss_dssp HHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCC-CEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEECC-CCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 4667999999999999999999999999999999999 68999998753 4589999999999999999999954 7
Q ss_pred eeecCCCCcc------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|||+|+.. ......||+.|+|||++.+..+ +.++||||+||++|||++|+.||
T Consensus 129 ivH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf 208 (336)
T 3h4j_B 129 IVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPF 208 (336)
T ss_dssp CCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred eEecCCchhhEEEcCCCCEEEEEeccceeccCCcccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCC
Confidence 9999999541 1123458999999999988765 78999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
........ ...+..... ..+...+..+.+++.+|++.||.+|||++|+++
T Consensus 209 ~~~~~~~~--------------~~~i~~~~~------~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 209 DDEFIPNL--------------FKKVNSCVY------VMPDFLSPGAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp BCSSSTTC--------------BCCCCSSCC------CCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred CCccHHHH--------------HHHHHcCCC------CCcccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 75322111 000000000 011223456789999999999999999999975
No 179
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=99.91 E-value=6.1e-25 Score=226.74 Aligned_cols=185 Identities=21% Similarity=0.238 Sum_probs=142.6
Q ss_pred Cchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
...|+.++.++ +|||++++++++......++||||+++|+|.+++... ..+++.....++.+++.|++|||.. +
T Consensus 62 ~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~i~~~-~~~~~~~~~~~~~qi~~al~~lH~~----g 136 (342)
T 2qr7_A 62 PTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQ-KFFSEREASAVLFTITKTVEYLHAQ----G 136 (342)
T ss_dssp CHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred hHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 45678888777 7999999999999999999999999999999999754 4589999999999999999999954 7
Q ss_pred eeecCCCCcc-----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 528 IIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 528 i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
|+|||+|+.. ......||+.|+|||++.+..|+.++||||+||++|||++|
T Consensus 137 ivHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g 216 (342)
T 2qr7_A 137 VVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTG 216 (342)
T ss_dssp EECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcC
Confidence 9999998431 01123579999999999887799999999999999999999
Q ss_pred CCCCCcCCCCC-ccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGE-MSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||....... ..+...+...... ... ..+...+..+.+++.+|+..||++||++.|+++
T Consensus 217 ~~Pf~~~~~~~~~~~~~~i~~~~~~---------~~~-----~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 217 YTPFANGPDDTPEEILARIGSGKFS---------LSG-----GYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp SCSSCSSTTSCHHHHHHHHHHCCCC---------CCS-----TTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHccCCcc---------cCc-----cccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 99997532111 1122222211100 000 012233456789999999999999999999875
No 180
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=99.91 E-value=3.5e-25 Score=222.27 Aligned_cols=192 Identities=26% Similarity=0.361 Sum_probs=148.0
Q ss_pred ccCchhhhhhccccccccceeccccccc-cccceeeccCCCCChHHhhhcCCC-ccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP-DFKALVLEFMPNGSLEKWLYSHNY-FLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~-~~~~lv~ey~~~g~L~~~l~~~~~-~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+..+..++|+|++++++++... ...++||||+++|+|.+++..... .+++.....++.++++|++|||..
T Consensus 59 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-- 136 (278)
T 1byg_A 59 QAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN-- 136 (278)
T ss_dssp HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhC--
Confidence 4567899999999999999999987554 468999999999999999975332 378889999999999999999954
Q ss_pred CCCeeecCCCCcc----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CCCC
Q 040540 525 SAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RKRP 581 (669)
Q Consensus 525 ~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~~p 581 (669)
+++|+|+++.. ......+++.|+|||+..+..++.++||||||+++|||+| |+.|
T Consensus 137 --~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p 214 (278)
T 1byg_A 137 --NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 214 (278)
T ss_dssp --TCCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred --CccccCCCcceEEEeCCCcEEEeeccccccccccccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCC
Confidence 79999998541 0112246788999999988889999999999999999999 9999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHHHh
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~~~ 661 (669)
|..... ..+...+...... . .+...+..+.+++.+||..||++||++.|+++.|++++.+.
T Consensus 215 ~~~~~~--~~~~~~~~~~~~~--------~---------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~~ 275 (278)
T 1byg_A 215 YPRIPL--KDVVPRVEKGYKM--------D---------APDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTHE 275 (278)
T ss_dssp CTTSCG--GGHHHHHTTTCCC--------C---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred CCCCCH--HHHHHHHhcCCCC--------C---------CcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhhh
Confidence 875322 2222222111100 0 01223456789999999999999999999999999998763
No 181
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=99.91 E-value=2.6e-25 Score=223.19 Aligned_cols=182 Identities=19% Similarity=0.285 Sum_probs=126.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++......++||||+++++|.+++......+++..+..++.++++|++|||..
T Consensus 56 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---- 131 (278)
T 3cok_A 56 QRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSH---- 131 (278)
T ss_dssp HHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 3466789999999999999999999988889999999999999999987667789999999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......||+.|+|||+..+..++.++||||||+++|||+||+.|
T Consensus 132 ~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p 211 (278)
T 3cok_A 132 GILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPP 211 (278)
T ss_dssp TEECSSCCGGGEEECTTCCEEECCCTTCEECC----------------------------CTHHHHHHHHHHHHHHSSCS
T ss_pred CeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 79999998531 01123489999999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|........ + .. ....... .+......+.+++.+||+.||++|||+.++++
T Consensus 212 ~~~~~~~~~-~----~~--------~~~~~~~-------~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 212 FDTDTVKNT-L----NK--------VVLADYE-------MPSFLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp SCCCSCC------------------CCSSCCC-------CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CCChhHHHH-H----HH--------HhhcccC-------CccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 975322110 0 00 0000000 01122346789999999999999999999976
No 182
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=99.91 E-value=4.9e-25 Score=225.59 Aligned_cols=193 Identities=24% Similarity=0.389 Sum_probs=149.4
Q ss_pred ccCchhhhhhccc-cccccceecccccccc-ccceeeccCCCCChHHhhhcCCC---------------ccCHHHHHHHH
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPD-FKALVLEFMPNGSLEKWLYSHNY---------------FLDILERLNIM 509 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~-~~~lv~ey~~~g~L~~~l~~~~~---------------~l~~~~~~~i~ 509 (669)
+.+..|+..+..+ +|||++++++++...+ ..++||||+++|+|.+++..... .+++..+..++
T Consensus 75 ~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (316)
T 2xir_A 75 RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS 154 (316)
T ss_dssp HHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCeeeEEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHH
Confidence 3566789999988 7899999999987654 47899999999999999986432 27889999999
Q ss_pred HhHHhhhhhhhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCcc
Q 040540 510 IDVGSALEYLRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAK 562 (669)
Q Consensus 510 ~~i~~~l~~lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~ 562 (669)
.++++|+.|||.. +++|+|+|+.. ......||+.|+|||++.+..++.+
T Consensus 155 ~qi~~al~~lH~~----~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~ 230 (316)
T 2xir_A 155 FQVAKGMEFLASR----KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQ 230 (316)
T ss_dssp HHHHHHHHHHHHT----TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHH
T ss_pred HHHHHHHHHHHhC----CcccccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccch
Confidence 9999999999954 79999999541 0112246788999999988889999
Q ss_pred ccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCC
Q 040540 563 CDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESP 641 (669)
Q Consensus 563 ~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P 641 (669)
+|||||||++|||+| |+.||....... .+...+........ +......+.+++.+||+.||
T Consensus 231 ~Di~slG~il~~l~t~g~~p~~~~~~~~-~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~dp 292 (316)
T 2xir_A 231 SDVWSFGVLLWEIFSLGASPYPGVKIDE-EFCRRLKEGTRMRA-----------------PDYTTPEMYQTMLDCWHGEP 292 (316)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSTTCCCSH-HHHHHHHHTCCCCC-----------------CTTCCHHHHHHHHHHTCSSG
T ss_pred hHHHHHHHHHHHHHhCCCCCCcccchhH-HHHHHhccCccCCC-----------------CCCCCHHHHHHHHHHcCCCh
Confidence 999999999999999 999987643222 22222222211111 11123457899999999999
Q ss_pred CCCCCHHHHHHHHHHhHHHh
Q 040540 642 DKRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 642 ~~Rps~~~v~~~l~~~~~~~ 661 (669)
.+|||+.|+++.|+.+.+..
T Consensus 293 ~~Rps~~ell~~L~~~~~~~ 312 (316)
T 2xir_A 293 SQRPTFSELVEHLGNLLQAN 312 (316)
T ss_dssp GGSCCHHHHHHHHHHHHHHH
T ss_pred hhCcCHHHHHHHHHHHHhhh
Confidence 99999999999999987653
No 183
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=99.91 E-value=7.4e-25 Score=228.73 Aligned_cols=182 Identities=21% Similarity=0.252 Sum_probs=141.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++.. ...+++.....++.+++.||.|||..
T Consensus 60 ~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~~LH~~---- 134 (384)
T 4fr4_A 60 RNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQ-NVHFKEETVKLFICELVMALDYLQNQ---- 134 (384)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 3456799999999999999999999999999999999999999999985 44689999999999999999999954
Q ss_pred CeeecCCCCcc------------------------cccccccccccCccccccC---CCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSE---GIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+|+|||+|+.. ......||+.|+|||++.. ..|+.++||||+||++|||+||+
T Consensus 135 givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~ 214 (384)
T 4fr4_A 135 RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGR 214 (384)
T ss_dssp TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSS
T ss_pred CceeccCcHHHeEECCCCCEEEeccceeeeccCCCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCC
Confidence 79999999531 1223469999999999864 35899999999999999999999
Q ss_pred CCCCcCCCCC-ccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC-HHHHH
Q 040540 580 RPTDEMFTGE-MSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH-MTDAA 651 (669)
Q Consensus 580 ~p~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps-~~~v~ 651 (669)
.||....... ..+.......... .+......+.+++.+||+.||.+||+ ++++.
T Consensus 215 ~Pf~~~~~~~~~~~~~~~~~~~~~------------------~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~ 270 (384)
T 4fr4_A 215 RPYHIRSSTSSKEIVHTFETTVVT------------------YPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQ 270 (384)
T ss_dssp CSSCCCTTSCHHHHHHHHHHCCCC------------------CCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHH
T ss_pred CCCCCCCCccHHHHHHHHhhcccC------------------CCCcCCHHHHHHHHHHhcCCHhHhcccHHHHH
Confidence 9997532221 1111111111100 01123356789999999999999998 66654
No 184
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=9.7e-27 Score=259.88 Aligned_cols=201 Identities=15% Similarity=0.074 Sum_probs=100.2
Q ss_pred CCCCCCEEeCCCCcCcccCCcccCCC--CCCCEEEccCCc-CCc-cCCccccCCcccccccccccCcccc----CCcccC
Q 040540 73 NLSFLVSLDISENNFHGHLPKELGQL--RRLRVMSLAYNK-LSG-SFPSWIGVLSKLRILRLDYNNFTGP----IPNSLF 144 (669)
Q Consensus 73 ~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~n~-l~~-~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~ 144 (669)
.+++|++|+|++|.+++..+..+... .+|++|+|++|. +.. .++....++++|++|+|++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 56677777777776665555444442 336666666665 110 1222233566666666666666543 222344
Q ss_pred CCCCCCeeeccccccc----ccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCC---CCCCccccC
Q 040540 145 NLSRLEMLRAEFNIIG----GTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLS---GLIPPTIFN 217 (669)
Q Consensus 145 ~l~~L~~L~l~~n~l~----~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~---~~~p~~~~~ 217 (669)
++++|+.|++++|.++ +.++..+.++++|++|++++|.+.+ +|..+..+++|++|+++.+... +..+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 5666666666666665 2334444556666666666666653 4455555666666666542221 122233444
Q ss_pred CCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCC-ccccCCCCCCEEeCC
Q 040540 218 ISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIP-NSITNATKLIGLDLG 276 (669)
Q Consensus 218 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~ls 276 (669)
+++|+.++++++.. +.+|..+. .+++|++|++++|.+.+... ..+..+++|+.|+++
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cccccccCccccch-hHHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 44455555444322 12333222 34445555555444332211 123344444444444
No 185
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=99.91 E-value=2.3e-25 Score=231.64 Aligned_cols=200 Identities=11% Similarity=0.080 Sum_probs=150.0
Q ss_pred cCchhhhhhcccccccccee---------------cccccc-ccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHH
Q 040540 448 SFDSECEVLRNVRHRNLIKI---------------ISSCSN-PDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMI 510 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l---------------~~~~~~-~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~ 510 (669)
.+..|+..+..++|+|++++ ++++.. ....++||||+ +++|.+++... ...+++.++..|+.
T Consensus 88 ~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~ 166 (352)
T 2jii_A 88 RLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVAC 166 (352)
T ss_dssp THHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccchhhhhhhhccCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHH
Confidence 56789999999999999984 444443 56779999999 89999999864 35689999999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCcc----------------------------------cccccccccccCccccccC
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSV----------------------------------TQTTTMATIGYMAPEYGSE 556 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~----------------------------------~~~~~~gt~~y~aPE~~~~ 556 (669)
|+++||+|||.. +++|||+|+.. ......||+.|+|||++.+
T Consensus 167 qi~~~L~~LH~~----~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 242 (352)
T 2jii_A 167 RLLDALEFLHEN----EYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKG 242 (352)
T ss_dssp HHHHHHHHHHHT----TCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTT
T ss_pred HHHHHHHHHHhC----CccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHcc
Confidence 999999999954 89999998430 0011258999999999998
Q ss_pred CCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhc
Q 040540 557 GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDC 636 (669)
Q Consensus 557 ~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c 636 (669)
..++.++|||||||++|||+||+.||.........+........ .......+.... +...+..+.+++.+|
T Consensus 243 ~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~l~~li~~~ 313 (352)
T 2jii_A 243 CGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFV-DKPGPFVGPCGH--------WIRPSETLQKYLKVV 313 (352)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHH-HSCCCEECTTSC--------EECCCHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHHhcc-CChhhhhhhccc--------cCCCcHHHHHHHHHH
Confidence 88999999999999999999999999764323322322222111 011111111000 112235678999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHhHHHh
Q 040540 637 CMESPDKRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 637 ~~~~P~~Rps~~~v~~~l~~~~~~~ 661 (669)
|+.||++||++.+|++.|+++....
T Consensus 314 l~~dp~~Rps~~~l~~~L~~~~~~~ 338 (352)
T 2jii_A 314 MALTYEEKPPYAMLRNNLEALLQDL 338 (352)
T ss_dssp HTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred HhCChhhCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998765
No 186
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=99.91 E-value=1.2e-24 Score=220.32 Aligned_cols=195 Identities=14% Similarity=0.112 Sum_probs=149.7
Q ss_pred cCchhhhhhccccccccceecccc-ccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSC-SNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..++|++++..+..+ ......++||||+ +++|.+++......+++..+..++.++++|++|||..
T Consensus 50 ~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---- 124 (296)
T 4hgt_A 50 QLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---- 124 (296)
T ss_dssp CHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEcc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 466788999999998888877766 4466678999999 8999999986666799999999999999999999954
Q ss_pred CeeecCCCCccc-----------------------------------ccccccccccCccccccCCCcCccccchhhHHH
Q 040540 527 PIIHCEGEDSVT-----------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 527 ~i~h~d~~~~~~-----------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
+++|+|+|+... .....||+.|+|||+..+..++.++|||||||+
T Consensus 125 ~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~i 204 (296)
T 4hgt_A 125 NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYV 204 (296)
T ss_dssp TEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHH
T ss_pred CeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHH
Confidence 799999985310 012358999999999999889999999999999
Q ss_pred HHHHHhCCCCCCcCCCCC-ccH-HHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 572 LMETFTRKRPTDEMFTGE-MSL-RRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 572 l~el~tg~~p~~~~~~~~-~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
+|||++|+.||....... ... ........+.. .. ......+..+.+++.+||+.||++||++.+
T Consensus 205 l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~--------~~------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ 270 (296)
T 4hgt_A 205 LMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP--------IE------VLCKGYPSEFATYLNFCRSLRFDDKPDYSY 270 (296)
T ss_dssp HHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSC--------HH------HHTTTSCHHHHHHHHHHHTSCTTCCCCHHH
T ss_pred HHHHhcCCCCCcccchhhhhhhhhhhhcccccch--------hh------hhhccCCHHHHHHHHHHHhcCCCCCCCHHH
Confidence 999999999997643221 111 11111110000 00 001122456889999999999999999999
Q ss_pred HHHHHHHhHHHh
Q 040540 650 AAAKLKKIKVKF 661 (669)
Q Consensus 650 v~~~l~~~~~~~ 661 (669)
|++.|+++..+.
T Consensus 271 l~~~l~~~~~~~ 282 (296)
T 4hgt_A 271 LRQLFRNLFHRQ 282 (296)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 187
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=99.91 E-value=2e-25 Score=244.43 Aligned_cols=189 Identities=23% Similarity=0.387 Sum_probs=148.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.|..|+.++..++|+|+++++++|.. ...++|||||++|+|.++++.. +..+++.++..|+.++++||+|||.
T Consensus 307 ~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~---- 381 (535)
T 2h8h_A 307 EAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---- 381 (535)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 457789999999999999999999876 6678999999999999999752 3458999999999999999999995
Q ss_pred CCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 526 APIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
.+|+|||+|+.. ......++..|+|||++....++.++|||||||++|||+| |
T Consensus 382 ~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g 461 (535)
T 2h8h_A 382 MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKG 461 (535)
T ss_dssp TTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTT
T ss_pred CCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCC
Confidence 479999999531 0111235678999999988889999999999999999999 9
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||..... ..+...+...... +.+..+...+.+++.+||+.||++|||+.+|++.|+++.
T Consensus 462 ~~P~~~~~~--~~~~~~i~~~~~~-----------------~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~ 522 (535)
T 2h8h_A 462 RVPYPGMVN--REVLDQVERGYRM-----------------PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF 522 (535)
T ss_dssp CCSSTTCCH--HHHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred CCCCCCCCH--HHHHHHHHcCCCC-----------------CCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence 999875321 1222222221110 111233456789999999999999999999999999875
Q ss_pred H
Q 040540 659 V 659 (669)
Q Consensus 659 ~ 659 (669)
.
T Consensus 523 ~ 523 (535)
T 2h8h_A 523 T 523 (535)
T ss_dssp C
T ss_pred h
Confidence 4
No 188
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.8e-23 Score=206.23 Aligned_cols=202 Identities=25% Similarity=0.251 Sum_probs=134.0
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecc
Q 040540 76 FLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAE 155 (669)
Q Consensus 76 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (669)
..+++++++|.++ .+|..+. ++|+.|++++|++.+..+..|.++++|++|+|++|.++...+..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4678888888887 4665554 578888888888887666778888888888888888876555556777777777777
Q ss_pred cccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCcccc
Q 040540 156 FNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRL 235 (669)
Q Consensus 156 ~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 235 (669)
+|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--- 170 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK--- 170 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc---
Confidence 77777666666677777777777777777666666677777777777777766554444555555555555555554
Q ss_pred chhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccc
Q 040540 236 PSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLT 305 (669)
Q Consensus 236 p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 305 (669)
+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.
T Consensus 171 ----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 171 ----------------------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ----------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ----------------------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 333334444455555555555554444444555555555555555543
No 189
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=99.91 E-value=5e-25 Score=226.09 Aligned_cols=189 Identities=20% Similarity=0.228 Sum_probs=130.4
Q ss_pred cCchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+..+..+. |||++++++++......++||||+++|+|.+++... ..+++.++..|+.++++|++|||. .
T Consensus 51 ~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH~----~ 125 (325)
T 3kn6_A 51 NTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKK-KHFSETEASYIMRKLVSAVSHMHD----V 125 (325)
T ss_dssp HHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred hHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 4456888888887 999999999999998999999999999999999864 568999999999999999999995 4
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+|+|||+|+.. ......||+.|+|||++.+..++.++||||+||++|||++|
T Consensus 126 ~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g 205 (325)
T 3kn6_A 126 GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSG 205 (325)
T ss_dssp TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC----------------------CCCCHHHHHHHHHHHHHHHHHS
T ss_pred CCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhC
Confidence 79999999531 01123478999999999988899999999999999999999
Q ss_pred CCCCCcCCCC--CccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTG--EMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||...... .....+.......... ... .+.+...+..+.+++.+|+..||.+|||+.|+++
T Consensus 206 ~~pf~~~~~~~~~~~~~~~~~~i~~~~~------~~~-----~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 206 QVPFQSHDRSLTCTSAVEIMKKIKKGDF------SFE-----GEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp SCTTC-------CCCHHHHHHHHTTTCC------CCC-----SHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred CCCCCCCccccccccHHHHHHHHHcCCC------CCC-----cccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 9999753321 1111222221111110 000 0113345567889999999999999999998863
No 190
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=99.91 E-value=8.3e-25 Score=227.73 Aligned_cols=186 Identities=19% Similarity=0.239 Sum_probs=138.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+.+|+..++.++|||++++++++......++||||+++|+|.+++... ..+++.....++.++++||+|||. .+
T Consensus 62 ~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~ql~~~L~~LH~----~~ 136 (361)
T 3uc3_A 62 NVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNA-GRFSEDEARFFFQQLLSGVSYCHS----MQ 136 (361)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4567899999999999999999999999999999999999999999753 458999999999999999999995 47
Q ss_pred eeecCCCCcc--------------------------cccccccccccCccccccCCCcCcc-ccchhhHHHHHHHHhCCC
Q 040540 528 IIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAK-CDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 528 i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~-~Dv~s~Gvil~el~tg~~ 580 (669)
|+|||+|+.. ......||+.|+|||++.+..+..+ +||||+||++|||++|+.
T Consensus 137 ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~ 216 (361)
T 3uc3_A 137 ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAY 216 (361)
T ss_dssp CCSCCCCGGGEEECSSSSCCEEECCCCCC---------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSC
T ss_pred cccCCCCHHHEEEcCCCCceEEEeecCccccccccCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCC
Confidence 9999998531 0122358999999999988776655 899999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||...... ......+......... .+........+.+++.+||+.||.+|||+.|+++
T Consensus 217 Pf~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~ 274 (361)
T 3uc3_A 217 PFEDPEEP-RDYRKTIQRILSVKYS-------------IPDDIRISPECCHLISRIFVADPATRISIPEIKT 274 (361)
T ss_dssp SCC----C-CCHHHHHHHHHTTCCC-------------CCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred CCCCCccH-HHHHHHHHHHhcCCCC-------------CCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHh
Confidence 99764322 2222222221111100 0001112345789999999999999999999976
No 191
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=99.91 E-value=7.6e-25 Score=224.83 Aligned_cols=198 Identities=15% Similarity=0.181 Sum_probs=143.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++......++||||++ |+|.+++...+..+++.....++.++++||+|||. .+
T Consensus 46 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~----~~ 120 (324)
T 3mtl_A 46 TAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHR----QK 120 (324)
T ss_dssp CCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEECCS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred hHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecccc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 45578999999999999999999999999999999998 69999998776778999999999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
|+|+|+|+.. ......||+.|+|||++.+ ..++.++||||+||++|||+||+.|
T Consensus 121 ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~p 200 (324)
T 3mtl_A 121 VLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPL 200 (324)
T ss_dssp EEESSCCGGGEEECTTCCEEECSSSEEECC------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred ccCCCcCHHHEEECCCCCEEEccCcccccccCCccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 9999999541 0112257999999998876 5689999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCC----CCccccccccc--------cchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLP----HRLSEVVDTNL--------VREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|..... ......+..... ..+........ ................+.+++.+|++.||++|||++|
T Consensus 201 f~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e 278 (324)
T 3mtl_A 201 FPGSTV--EEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAED 278 (324)
T ss_dssp CCCSSH--HHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred CCCCCH--HHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHH
Confidence 976321 122222222111 11111111000 0000000111233456789999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
+++
T Consensus 279 ~l~ 281 (324)
T 3mtl_A 279 AMK 281 (324)
T ss_dssp HTT
T ss_pred Hhc
Confidence 976
No 192
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=99.91 E-value=9.7e-25 Score=222.82 Aligned_cols=180 Identities=19% Similarity=0.184 Sum_probs=142.2
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|..++..++|||++++++++......++||||+++|+|.+++... ..+++.....++.+++.||+|||. .+
T Consensus 52 ~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~----~~ 126 (318)
T 1fot_A 52 HTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS-QRFPNPVAKFYAAEVCLALEYLHS----KD 126 (318)
T ss_dssp HHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHT-SSCCHHHHHHHHHHHHHHHHHHHT----TT
T ss_pred HHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4556888999999999999999999988999999999999999999854 458899999999999999999994 48
Q ss_pred eeecCCCCcc----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcC
Q 040540 528 IIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 528 i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~ 585 (669)
|+|||+|+.. ...+..||+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 127 ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 206 (318)
T 1fot_A 127 IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS 206 (318)
T ss_dssp EECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred ccccCCChheEEEcCCCCEEEeecCcceecCCccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence 9999999541 112346999999999999888999999999999999999999999653
Q ss_pred CCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
. .......+.... ... +......+.+++.+|++.||++|| +++|+++
T Consensus 207 ~--~~~~~~~i~~~~-~~~-----------------p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 207 N--TMKTYEKILNAE-LRF-----------------PPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp S--HHHHHHHHHHCC-CCC-----------------CTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred C--HHHHHHHHHhCC-CCC-----------------CCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 2 111111111110 000 112234578999999999999999 7888764
No 193
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=99.91 E-value=1.4e-24 Score=229.11 Aligned_cols=186 Identities=19% Similarity=0.238 Sum_probs=136.8
Q ss_pred Cchhhhhh-ccccccccceecccccc----ccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 449 FDSECEVL-RNVRHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 449 ~~~e~~~l-~~l~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+..|+..+ +..+|+|++++++++.. ....++|||||++|+|.+++.... ..+++..+..|+.++++||+|||.
T Consensus 101 ~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~- 179 (400)
T 1nxk_A 101 ARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS- 179 (400)
T ss_dssp HHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 44567665 44589999999998754 566799999999999999998643 368999999999999999999995
Q ss_pred CCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 523 HSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
.+|+|||+|+.. .....+||+.|+|||++.+..|+.++|||||||++|||
T Consensus 180 ---~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el 256 (400)
T 1nxk_A 180 ---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYIL 256 (400)
T ss_dssp ---TTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-----------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHH
T ss_pred ---CCccccCcCcceEEEecCCCCccEEEEecccccccCCCCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHH
Confidence 479999998431 01223579999999999988999999999999999999
Q ss_pred HhCCCCCCcCCCCC--ccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 576 FTRKRPTDEMFTGE--MSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 576 ~tg~~p~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
++|+.||....... ..+...+...... . + .+.+......+.+++.+||+.||++|||+.|+++
T Consensus 257 l~g~~pf~~~~~~~~~~~~~~~i~~~~~~-~-----~--------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 321 (400)
T 1nxk_A 257 LCGYPPFYSNHGLAISPGMKTRIRMGQYE-F-----P--------NPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 321 (400)
T ss_dssp HHSSCSCCCCTTCSSCCSHHHHHHHTCCC-C-----C--------TTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HhCCCCCCCCccccccHHHHHHHHcCccc-C-----C--------CcccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 99999997643221 1122222221100 0 0 0012233456789999999999999999999986
No 194
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=99.91 E-value=1.5e-24 Score=219.85 Aligned_cols=195 Identities=14% Similarity=0.105 Sum_probs=149.3
Q ss_pred cCchhhhhhccccccccceeccccc-cccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCS-NPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~-~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..++|++.+..+..+. .....++||||+ +++|.+++......+++..+..++.++++|++|||..
T Consensus 50 ~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---- 124 (296)
T 3uzp_A 50 QLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---- 124 (296)
T ss_dssp HHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 4667899999999988887776664 456678999999 8999999986566799999999999999999999954
Q ss_pred CeeecCCCCccc-----------------------------------ccccccccccCccccccCCCcCccccchhhHHH
Q 040540 527 PIIHCEGEDSVT-----------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 527 ~i~h~d~~~~~~-----------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
+++|+|+|+... .....||+.|+|||+..+..++.++|||||||+
T Consensus 125 ~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~i 204 (296)
T 3uzp_A 125 NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYV 204 (296)
T ss_dssp TEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHH
T ss_pred CeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHH
Confidence 799999984310 122358999999999999889999999999999
Q ss_pred HHHHHhCCCCCCcCCCC-CccHH-HHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 572 LMETFTRKRPTDEMFTG-EMSLR-RWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 572 l~el~tg~~p~~~~~~~-~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
+|||+||+.||...... ..... .......+... .......+..+.+++.+||+.||++||++.+
T Consensus 205 l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ 270 (296)
T 3uzp_A 205 LMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPI--------------EVLCKGYPSEFATYLNFCRSLRFDDKPDYSY 270 (296)
T ss_dssp HHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCH--------------HHHTTTSCHHHHHHHHHHHTSCTTCCCCHHH
T ss_pred HHHHHhCCCCCCCcCchhhhhhhhhhcccccCCch--------------HHHHhhCCHHHHHHHHHHHhcCcCcCCCHHH
Confidence 99999999999764321 11111 11111110000 0001223456889999999999999999999
Q ss_pred HHHHHHHhHHHh
Q 040540 650 AAAKLKKIKVKF 661 (669)
Q Consensus 650 v~~~l~~~~~~~ 661 (669)
|++.|+++..+.
T Consensus 271 l~~~l~~~~~~~ 282 (296)
T 3uzp_A 271 LRQLFRNLFHRQ 282 (296)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999987764
No 195
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.91 E-value=1e-24 Score=231.66 Aligned_cols=185 Identities=22% Similarity=0.235 Sum_probs=139.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+.++.+++|||++++++++... ..++||||+++|+|.+++.. ...+++.....++.|+++||+|||..
T Consensus 185 ~~~~~E~~~l~~l~hpniv~l~~~~~~~-~~~lv~e~~~~g~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~LH~~---- 258 (419)
T 3i6u_A 185 LNVETEIEILKKLNHPCIIKIKNFFDAE-DYYIVLELMEGGELFDKVVG-NKRLKEATCKLYFYQMLLAVQYLHEN---- 258 (419)
T ss_dssp CCHHHHHHHHHHCCCTTBCCCCEEEESS-EEEEEEECCTTCBGGGGTSS-SCCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEecC-ceEEEEEcCCCCcHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 3567899999999999999999987644 46899999999999999975 35689999999999999999999954
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccC---CCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSE---GIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gvil~el~ 576 (669)
+|+|||+|+.. ......||+.|+|||++.+ ..++.++|||||||++|||+
T Consensus 259 ~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~ll 338 (419)
T 3i6u_A 259 GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICL 338 (419)
T ss_dssp TCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHH
T ss_pred CccccCCChHhEEEecCCCcceEEEeecccceecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHH
Confidence 79999999531 0112358999999999853 56889999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||+.||.... ....+...+......... ..+......+.+++.+|++.||++|||+.|+++
T Consensus 339 tg~~pf~~~~-~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 339 SGYPPFSEHR-TQVSLKDQITSGKYNFIP--------------EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp HSSCSSCCCS-SSCCHHHHHHTTCCCCCH--------------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HCCCCCCCCc-chHHHHHHHhcCCCCCCc--------------hhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 9999997632 222333333222111000 012234456889999999999999999999986
No 196
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3.5e-24 Score=213.98 Aligned_cols=224 Identities=22% Similarity=0.227 Sum_probs=184.7
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccC
Q 040540 55 ALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNN 134 (669)
Q Consensus 55 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 134 (669)
.+++..+.+.... .+..+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+ + ..++.+++|++|+|++|.
T Consensus 23 ~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 23 KANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSC
T ss_pred HHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCc
Confidence 4455555555443 35678899999999999873 3 358889999999999999986 3 478999999999999999
Q ss_pred ccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCcc
Q 040540 135 FTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPT 214 (669)
Q Consensus 135 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 214 (669)
+++..+..+.++++|++|++++|.+.+..+..++++++|++|++++|.+++..+..++.+++|++|++++|.+++..+..
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 176 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence 99877778899999999999999999888888899999999999999999888878889999999999999999887777
Q ss_pred ccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCC
Q 040540 215 IFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLR 292 (669)
Q Consensus 215 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~ 292 (669)
+..+++|++|++++|.+++..|..+. .+++|++|++++|.+.+. ++.|+.++++.|.+.|.+|..++.+.
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFD-RLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred hcCCccCCEEECCCCcCCccCHHHHh-CCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 88899999999999998864444343 688899999998877644 44677888888888888888776554
No 197
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=99.91 E-value=3.2e-25 Score=229.50 Aligned_cols=183 Identities=23% Similarity=0.244 Sum_probs=142.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||++ |++.+++......+++..+..++.++++||+|||..
T Consensus 99 ~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---- 173 (348)
T 1u5q_A 99 QDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH---- 173 (348)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEEecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 456789999999999999999999998889999999998 789888876566799999999999999999999954
Q ss_pred CeeecCCCCcc---------------------cccccccccccCcccccc---CCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 527 PIIHCEGEDSV---------------------TQTTTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+|+|+|+|+.. ......||+.|+|||++. ...++.++|||||||++|||+||+.||
T Consensus 174 ~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~ 253 (348)
T 1u5q_A 174 NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL 253 (348)
T ss_dssp TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CeeeCCCCHHHEEECCCCCEEEeeccCceecCCCCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 79999999541 112335899999999874 567899999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
...... ..+........+. .. ....+..+.+++.+||+.||++|||+.++++
T Consensus 254 ~~~~~~-~~~~~~~~~~~~~---------~~--------~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~ 305 (348)
T 1u5q_A 254 FNMNAM-SALYHIAQNESPA---------LQ--------SGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK 305 (348)
T ss_dssp TTSCHH-HHHHHHHHSCCCC---------CC--------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCCChH-HHHHHHHhcCCCC---------CC--------CCCCCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 653211 1111111111110 00 0112345689999999999999999999975
No 198
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=99.91 E-value=4.3e-25 Score=222.82 Aligned_cols=199 Identities=19% Similarity=0.186 Sum_probs=142.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++...+..++||||+++ +|.+++......+++.....++.|+++|++|||. .+
T Consensus 46 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~----~~ 120 (288)
T 1ob3_A 46 TTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHD----RR 120 (288)
T ss_dssp HHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred hHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEecCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 455799999999999999999999988899999999984 9999998765678999999999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
|+|+|+|+.. ......||+.|+|||++.+ ..++.++||||+||++|||+||+.|
T Consensus 121 i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~p 200 (288)
T 1ob3_A 121 VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPL 200 (288)
T ss_dssp CCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred eecCCCCHHHEEEcCCCCEEEeECccccccCccccccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 9999999541 0112358999999999876 4589999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhC-C--CCcccc-----ccccccch--hhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESL-P--HRLSEV-----VDTNLVRE--EQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAA 651 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~-~--~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~ 651 (669)
|..... ...+....+..- + ..+... .++..... .+...........+.+++.+|++.||++|||+.|++
T Consensus 201 f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l 279 (288)
T 1ob3_A 201 FPGVSE-ADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQAL 279 (288)
T ss_dssp CCCSSH-HHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CCCCCH-HHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHh
Confidence 976321 111222211110 0 000000 00000000 000000122345678999999999999999999987
Q ss_pred H
Q 040540 652 A 652 (669)
Q Consensus 652 ~ 652 (669)
+
T Consensus 280 ~ 280 (288)
T 1ob3_A 280 E 280 (288)
T ss_dssp T
T ss_pred c
Confidence 5
No 199
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=99.91 E-value=1.5e-25 Score=229.47 Aligned_cols=202 Identities=22% Similarity=0.344 Sum_probs=150.2
Q ss_pred ccCchhhhhhccccccccceeccccccc--cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP--DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+.++..++|||++++++++... ...++||||+++|+|.+++... .+++..+..++.+++.|++|||..
T Consensus 78 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~i~~~l~~~l~~LH~~-- 153 (318)
T 3lxp_A 78 SGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRH--SIGLAQLLLFAQQICEGMAYLHAQ-- 153 (318)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEEEECCCTTCBHHHHGGGS--CCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEEEEecccCCcHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHHhC--
Confidence 3567899999999999999999998763 5668999999999999999754 389999999999999999999954
Q ss_pred CCCeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+|+.. ......||..|+|||++.+..++.++||||+||++|||+
T Consensus 154 --~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll 231 (318)
T 3lxp_A 154 --HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELL 231 (318)
T ss_dssp --TEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHH
T ss_pred --CccCCCCchheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 79999999531 011123677899999998888999999999999999999
Q ss_pred hCCCCCCcCCCCCccH-----HHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHH
Q 040540 577 TRKRPTDEMFTGEMSL-----RRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAA 651 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~ 651 (669)
||+.||.......... ...... ...+.+... .+.+.+..++..+.+++.+||+.||++|||+.|++
T Consensus 232 ~g~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell 302 (318)
T 3lxp_A 232 THCDSSQSPPTKFLELIGIAQGQMTVL----RLTELLERG-----ERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLI 302 (318)
T ss_dssp TTTCGGGSHHHHHHHHHCSCCHHHHHH----HHHHHHHTT-----CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred hCCCcccccchhhhhhhcccccchhHH----HHHHHHhcc-----cCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHH
Confidence 9999986421100000 000000 000000000 00111223445788999999999999999999999
Q ss_pred HHHHHhHHHhhh
Q 040540 652 AKLKKIKVKFLD 663 (669)
Q Consensus 652 ~~l~~~~~~~~~ 663 (669)
+.|+++.+++..
T Consensus 303 ~~L~~l~~~~~~ 314 (318)
T 3lxp_A 303 PILKTVHEKYQG 314 (318)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHhhcc
Confidence 999999888754
No 200
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=99.91 E-value=2e-25 Score=225.65 Aligned_cols=191 Identities=22% Similarity=0.315 Sum_probs=147.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++.... .++||||+++|+|.+++......+++.....++.++++|+.|||..
T Consensus 66 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---- 140 (291)
T 1u46_A 66 DDFIREVNAMHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESK---- 140 (291)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSSS-CEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCcccEEEEEccCC-ceeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhC----
Confidence 45678999999999999999999987655 7899999999999999987656789999999999999999999954
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT- 577 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t- 577 (669)
+++|+|+++.. ......||..|+|||+..+..++.++||||||+++|||++
T Consensus 141 ~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~ 220 (291)
T 1u46_A 141 RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTY 220 (291)
T ss_dssp TEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTT
T ss_pred CcccCCCchheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhC
Confidence 79999999541 0011236778999999988889999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHh
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKI 657 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~ 657 (669)
|+.||..... ..+...+..... . .+.+...+..+.+++.+||..||++|||+.++++.|+++
T Consensus 221 g~~p~~~~~~--~~~~~~~~~~~~-~---------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 282 (291)
T 1u46_A 221 GQEPWIGLNG--SQILHKIDKEGE-R---------------LPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA 282 (291)
T ss_dssp SCCTTTTCCH--HHHHHHHHTSCC-C---------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCcccCCH--HHHHHHHHccCC-C---------------CCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHh
Confidence 9999865321 112221111100 0 001122345678999999999999999999999999988
Q ss_pred HHH
Q 040540 658 KVK 660 (669)
Q Consensus 658 ~~~ 660 (669)
.+.
T Consensus 283 ~~~ 285 (291)
T 1u46_A 283 QPT 285 (291)
T ss_dssp C--
T ss_pred Ccc
Confidence 654
No 201
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.2e-23 Score=207.48 Aligned_cols=192 Identities=20% Similarity=0.235 Sum_probs=171.6
Q ss_pred CCCCccceeeCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCC
Q 040540 37 PICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFP 116 (669)
Q Consensus 37 ~~c~~~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 116 (669)
.+|.|.|..|.. ..+.++++++++. .+|..+. ++|+.|+|++|.+.+..+..|.++++|++|+|++|++.+..|
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 356888888953 3567999999997 5565554 689999999999999888899999999999999999998888
Q ss_pred ccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCC
Q 040540 117 SWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQN 196 (669)
Q Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~ 196 (669)
..|.++++|++|+|++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..|+.+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 88999999999999999999888888999999999999999999887778899999999999999999887778999999
Q ss_pred CCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccc
Q 040540 197 LKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGR 234 (669)
Q Consensus 197 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 234 (669)
|++|+|++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999999988888889999999999999998764
No 202
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=99.91 E-value=1e-24 Score=233.85 Aligned_cols=180 Identities=22% Similarity=0.276 Sum_probs=143.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+.+|+.+++.++|||++++++++......++||||+++|+|.+++.. ...+++.....++.|+++|++|||. .+
T Consensus 62 ~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH~----~g 136 (476)
T 2y94_A 62 KIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICK-NGRLDEKESRRLFQQILSGVDYCHR----HM 136 (476)
T ss_dssp HHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSSEEHHHHTTS-SSSCCHHHHHHHHHHHHHHHHHHHT----TT
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 466799999999999999999999998999999999999999999975 3468999999999999999999994 48
Q ss_pred eeecCCCCcc------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+.. ......||+.|+|||++.+..+ +.++||||+||++|||++|+.||
T Consensus 137 ivHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf 216 (476)
T 2y94_A 137 VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPF 216 (476)
T ss_dssp EECSCCSGGGEEECTTCCEEECCCSSCEECCTTCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSS
T ss_pred CCcccccHHHEEEecCCCeEEEeccchhhccccccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCC
Confidence 9999999531 1123468999999999988765 78999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.... ...+...+...... .+......+.+++.+||+.||.+|||+.|+++
T Consensus 217 ~~~~--~~~~~~~i~~~~~~------------------~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 217 DDDH--VPTLFKKICDGIFY------------------TPQYLNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp CCSS--SHHHHHHHHTTCCC------------------CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCC--HHHHHHHHhcCCcC------------------CCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 7532 11122222111100 01112345789999999999999999999986
No 203
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=99.91 E-value=2.3e-25 Score=226.06 Aligned_cols=182 Identities=22% Similarity=0.241 Sum_probs=139.3
Q ss_pred ccCchhhhhhccccccccceecccccc--ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN--PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+.++..++|||++++++++.. ....++||||+++|+|.+++.. ..+++.+...++.++++||+|||..
T Consensus 81 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-- 156 (298)
T 2zv2_A 81 EQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL--KPLSEDQARFYFQDLIKGIEYLHYQ-- 156 (298)
T ss_dssp CHHHHHHHHHHTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS--SCCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHC--
Confidence 457789999999999999999999876 5567899999999999987653 4689999999999999999999954
Q ss_pred CCCeeecCCCCcc-------------------------cccccccccccCccccccCCC---cCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGI---VSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+|+.. ......||+.|+|||++.+.. ++.++|||||||++|||+
T Consensus 157 --~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~ 234 (298)
T 2zv2_A 157 --KIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFV 234 (298)
T ss_dssp --TEECCCCCGGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHH
T ss_pred --CeeccCCCHHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHH
Confidence 79999999531 012235899999999987654 478999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||.... ...+...+...... . + ........+.+++.+||+.||++|||+.|+++
T Consensus 235 ~g~~pf~~~~--~~~~~~~~~~~~~~-~-----~----------~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 235 FGQCPFMDER--IMCLHSKIKSQALE-F-----P----------DQPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp HSSCSSCCSS--HHHHHHHHHHCCCC-C-----C----------SSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HCCCCCCCcc--HHHHHHHHhcccCC-C-----C----------CccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 9999986521 11111111111100 0 0 01122345789999999999999999999864
No 204
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=99.91 E-value=4.4e-25 Score=227.08 Aligned_cols=197 Identities=24% Similarity=0.329 Sum_probs=147.8
Q ss_pred ccCchhhhhhccccccccceeccccc--cccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCS--NPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+.++..++|+|++++++++. .....++||||+++|+|.+++......+++..+..|+.++++|++|||.
T Consensus 69 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~--- 145 (327)
T 3lxl_A 69 RDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGS--- 145 (327)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcCCCceeEEEEEEecCCCceEEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh---
Confidence 34678999999999999999999876 3456789999999999999998755678999999999999999999995
Q ss_pred CCCeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||+
T Consensus 146 -~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll 224 (327)
T 3lxl_A 146 -RRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELF 224 (327)
T ss_dssp -TTEECSCCSGGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHH
T ss_pred -CCccCCCCChhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHH
Confidence 489999999541 011123777899999998888999999999999999999
Q ss_pred hCCCCCCcCCCC----------CccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 577 TRKRPTDEMFTG----------EMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 577 tg~~p~~~~~~~----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
+|+.||.....+ ........... ... .+.+.+...+..+.+++.+||+.||++|||
T Consensus 225 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~~~~~~~l~~li~~~l~~dP~~Rps 290 (327)
T 3lxl_A 225 TYCDKSCSPSAEFLRMMGCERDVPALSRLLELL---------EEG-----QRLPAPPACPAEVHELMKLCWAPSPQDRPS 290 (327)
T ss_dssp TTTCGGGSHHHHHHHHCC----CCHHHHHHHHH---------HTT-----CCCCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred hCCCCCccccchhhhhcccccccccHHHHHHHh---------hcc-----cCCCCCCcccHHHHHHHHHHcCCChhhCcC
Confidence 999998542110 00000000000 000 001112234566889999999999999999
Q ss_pred HHHHHHHHHHhHHHh
Q 040540 647 MTDAAAKLKKIKVKF 661 (669)
Q Consensus 647 ~~~v~~~l~~~~~~~ 661 (669)
+.|+++.|+++....
T Consensus 291 ~~ell~~L~~~~~~~ 305 (327)
T 3lxl_A 291 FSALGPQLDMLWSGS 305 (327)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999886554
No 205
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=99.91 E-value=9.8e-25 Score=224.82 Aligned_cols=176 Identities=25% Similarity=0.280 Sum_probs=141.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCC-ChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNG-SLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g-~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+.++..++|||++++++++......++||||+.+| +|.+++... ..+++..+..|+.++++||+|||..
T Consensus 74 ~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~~~~lv~e~~~~g~~l~~~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~--- 149 (335)
T 3dls_A 74 GKVTLEIAILSRVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRH-PRLDEPLASYIFRQLVSAVGYLRLK--- 149 (335)
T ss_dssp EEEEHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTSCBHHHHHHTC-CCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEeeCCEEEEEEEeCCCCccHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhC---
Confidence 45677999999999999999999999999999999999777 999999753 4589999999999999999999954
Q ss_pred CCeeecCCCCcc------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhCCC
Q 040540 526 APIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 526 ~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+|+|+|+|+.. ......||+.|+|||++.+..+ +.++|||||||++|||++|+.
T Consensus 150 -~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~ 228 (335)
T 3dls_A 150 -DIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEEN 228 (335)
T ss_dssp -TEECSCCSGGGEEECTTSCEEECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSC
T ss_pred -CeEEeccCHHHEEEcCCCcEEEeecccceECCCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCC
Confidence 79999999531 1122358999999999988776 889999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAK 653 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~ 653 (669)
||...... ......+ +......+.+++.+||+.||++|||+.|+++-
T Consensus 229 pf~~~~~~---------------~~~~~~~-----------~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 229 PFCELEET---------------VEAAIHP-----------PYLVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp SCSSGGGG---------------TTTCCCC-----------SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred chhhHHHH---------------HhhccCC-----------CcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 99652110 0000000 11123457899999999999999999999873
No 206
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=99.91 E-value=9.5e-25 Score=223.57 Aligned_cols=194 Identities=20% Similarity=0.260 Sum_probs=148.4
Q ss_pred ccCchhhhhhccccccccceeccccc----cccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCS----NPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~----~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
+.+..|+.++..++|||++++++++. .....++||||+++|+|.+++.. .+..+++..+..++.++++||+||
T Consensus 71 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~L 150 (317)
T 2buj_A 71 EEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAI 150 (317)
T ss_dssp HHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45668999999999999999999886 34567899999999999999975 356789999999999999999999
Q ss_pred hcCCCCCCeeecCCCCcccc----------------------------------cccccccccCccccccCCC---cCcc
Q 040540 520 RHGHSSAPIIHCEGEDSVTQ----------------------------------TTTMATIGYMAPEYGSEGI---VSAK 562 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~~~----------------------------------~~~~gt~~y~aPE~~~~~~---~~~~ 562 (669)
|.. +++|+|+++.... ....||+.|+|||++.... ++.+
T Consensus 151 H~~----~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~ 226 (317)
T 2buj_A 151 HAK----GYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDER 226 (317)
T ss_dssp HHT----TEECCCCCGGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTH
T ss_pred HhC----CcccCCCCHHHEEEcCCCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCch
Confidence 954 7999999954100 0113589999999987543 6889
Q ss_pred ccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 563 CDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 563 ~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
+|||||||++|||++|+.||.........+.......... +.....+..+.+++.+||+.||.
T Consensus 227 ~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~~l~~dp~ 289 (317)
T 2buj_A 227 TDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSI-----------------PQSPRHSSALWQLLNSMMTVDPH 289 (317)
T ss_dssp HHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC--C-----------------CCCTTSCHHHHHHHHHHTCSSGG
T ss_pred hhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhccCCC-----------------CccccCCHHHHHHHHHHhhcChh
Confidence 9999999999999999999864322222222222211000 00112234678999999999999
Q ss_pred CCCCHHHHHHHHHHhHHHh
Q 040540 643 KRMHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 643 ~Rps~~~v~~~l~~~~~~~ 661 (669)
+||++.|+++.|+.+.+..
T Consensus 290 ~Rps~~~ll~~L~~~~~~~ 308 (317)
T 2buj_A 290 QRPHIPLLLSQLEALQPPA 308 (317)
T ss_dssp GSCCHHHHHHHHHHTCCCC
T ss_pred hCCCHHHHHHHhhhcCCCC
Confidence 9999999999999887543
No 207
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=99.91 E-value=1e-24 Score=219.49 Aligned_cols=187 Identities=19% Similarity=0.254 Sum_probs=144.6
Q ss_pred cCchhhhhhccccccccceecccccc----------------ccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHH
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSN----------------PDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMI 510 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~----------------~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~ 510 (669)
.+..|+..+..++|||++++++++.. ....++||||+++|+|.+++... ...+++..+..++.
T Consensus 50 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~ 129 (284)
T 2a19_B 50 KAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFE 129 (284)
T ss_dssp GGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHH
Confidence 45678999999999999999988743 34478999999999999999753 35689999999999
Q ss_pred hHHhhhhhhhcCCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccch
Q 040540 511 DVGSALEYLRHGHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVY 566 (669)
Q Consensus 511 ~i~~~l~~lh~~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~ 566 (669)
++++|+.|||.. +++|+|+++.. ......||+.|+|||+..+..++.++|||
T Consensus 130 qi~~~l~~lH~~----~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~ 205 (284)
T 2a19_B 130 QITKGVDYIHSK----KLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLY 205 (284)
T ss_dssp HHHHHHHHHHHT----TEECSCCSGGGEEEEETTEEEECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHH
T ss_pred HHHHHHHHHHhC----CeeeccCCHHHEEEcCCCCEEECcchhheeccccccccccCCcccccChhhhccCCCcchhhhH
Confidence 999999999954 79999999531 11223589999999999888899999999
Q ss_pred hhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 567 SYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 567 s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
||||++|||+||+.|+... ..+.......... ......+.+++.+||..||.+|||
T Consensus 206 slG~il~~l~~~~~~~~~~-------~~~~~~~~~~~~~-----------------~~~~~~~~~li~~~l~~dp~~Rps 261 (284)
T 2a19_B 206 ALGLILAELLHVCDTAFET-------SKFFTDLRDGIIS-----------------DIFDKKEKTLLQKLLSKKPEDRPN 261 (284)
T ss_dssp HHHHHHHHHHSCCSSHHHH-------HHHHHHHHTTCCC-----------------TTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred HHHHHHHHHHhcCCcchhH-------HHHHHHhhccccc-----------------ccCCHHHHHHHHHHccCChhhCcC
Confidence 9999999999999886431 1111111011010 011234678999999999999999
Q ss_pred HHHHHHHHHHhHHHhh
Q 040540 647 MTDAAAKLKKIKVKFL 662 (669)
Q Consensus 647 ~~~v~~~l~~~~~~~~ 662 (669)
+.|+++.|+.++....
T Consensus 262 ~~e~l~~l~~~~~~~~ 277 (284)
T 2a19_B 262 TSEILRTLTVWKKSPE 277 (284)
T ss_dssp HHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhhCCC
Confidence 9999999999876643
No 208
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.91 E-value=9.2e-25 Score=244.19 Aligned_cols=190 Identities=19% Similarity=0.315 Sum_probs=149.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++. .+..++||||+++|+|.+++...+..+++..+..++.++++||+|||..
T Consensus 436 ~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---- 510 (656)
T 2j0j_A 436 EKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESK---- 510 (656)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEe-cCceEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 45667899999999999999999885 4567899999999999999987666799999999999999999999954
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-CC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-RK 579 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g~ 579 (669)
+|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||++ |+
T Consensus 511 givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~ 590 (656)
T 2j0j_A 511 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 590 (656)
T ss_dssp TCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CccccccchHhEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCC
Confidence 79999999541 0011235678999999988889999999999999999997 99
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKV 659 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~ 659 (669)
.||.... ...+...+....... .+..++..+.+++.+||..||++|||+.|+++.|+++.+
T Consensus 591 ~Pf~~~~--~~~~~~~i~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~ 651 (656)
T 2j0j_A 591 KPFQGVK--NNDVIGRIENGERLP-----------------MPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE 651 (656)
T ss_dssp CTTTTCC--HHHHHHHHHHTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCCC--HHHHHHHHHcCCCCC-----------------CCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence 9987532 112222222221110 011234567899999999999999999999999999865
Q ss_pred H
Q 040540 660 K 660 (669)
Q Consensus 660 ~ 660 (669)
.
T Consensus 652 ~ 652 (656)
T 2j0j_A 652 E 652 (656)
T ss_dssp H
T ss_pred H
Confidence 4
No 209
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=99.91 E-value=7e-25 Score=226.91 Aligned_cols=180 Identities=17% Similarity=0.105 Sum_probs=142.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|..++..++|||++++++++......++||||+++|+|.+++.+. ..+++.....++.+++.||+|||. .+
T Consensus 87 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~----~~ 161 (350)
T 1rdq_E 87 HTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRI-GRFSEPHARFYAAQIVLTFEYLHS----LD 161 (350)
T ss_dssp HHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4567889999999999999999999988999999999999999999854 358999999999999999999995 47
Q ss_pred eeecCCCCcc----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcC
Q 040540 528 IIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 528 i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~ 585 (669)
|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 162 ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~ 241 (350)
T 1rdq_E 162 LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD 241 (350)
T ss_dssp EECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cccccCccceEEECCCCCEEEcccccceeccCCcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCC
Confidence 9999999541 112346999999999999888999999999999999999999999753
Q ss_pred CCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC-----HHHHHH
Q 040540 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH-----MTDAAA 652 (669)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps-----~~~v~~ 652 (669)
. ...+...+..... .. +......+.+++.+||+.||.+||+ ++||++
T Consensus 242 ~--~~~~~~~i~~~~~-~~-----------------p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 242 Q--PIQIYEKIVSGKV-RF-----------------PSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp S--HHHHHHHHHHCCC-CC-----------------CTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred C--HHHHHHHHHcCCC-CC-----------------CCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 2 1112111111110 00 1122345789999999999999998 777754
No 210
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=99.91 E-value=9.1e-25 Score=230.67 Aligned_cols=209 Identities=20% Similarity=0.194 Sum_probs=151.8
Q ss_pred cCchhhhhhccccccccceecccccccc--ccceeeccCCCCChHHhhhcCC--CccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPD--FKALVLEFMPNGSLEKWLYSHN--YFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv~ey~~~g~L~~~l~~~~--~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+..|+.++..++|||++++++++.... ..++||||+++|+|.+++.... ..+++..+..++.+++.||+|||..
T Consensus 53 ~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~- 131 (396)
T 4eut_A 53 VQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN- 131 (396)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence 4557899999999999999999887654 6689999999999999998632 2389999999999999999999954
Q ss_pred CCCCeeecCCCCccc----------------------------ccccccccccCccccccC--------CCcCccccchh
Q 040540 524 SSAPIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSE--------GIVSAKCDVYS 567 (669)
Q Consensus 524 ~~~~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~s 567 (669)
+|+|||+|+... .....||+.|+|||++.+ ..++.++||||
T Consensus 132 ---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwS 208 (396)
T 4eut_A 132 ---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWS 208 (396)
T ss_dssp ---TEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHH
T ss_pred ---CEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHH
Confidence 799999995411 112348999999998764 45788999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCC--ccHHHHHHHhCCCCcccccccccc-------chhhhhhhhHHHHHHHHHHHhhccc
Q 040540 568 YGVLLMETFTRKRPTDEMFTGE--MSLRRWVKESLPHRLSEVVDTNLV-------REEQAFSAKMDCLLSIMDLALDCCM 638 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~c~~ 638 (669)
|||++|||+||+.||....... ..+..-+....+......+..... ...............+.+++.+||+
T Consensus 209 lG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~ 288 (396)
T 4eut_A 209 IGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILE 288 (396)
T ss_dssp HHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhc
Confidence 9999999999999996533222 112222222222211111100000 0000011235677788999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhHHH
Q 040540 639 ESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 639 ~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
.||++||++.|+++.++++..+
T Consensus 289 ~dP~~R~s~~e~l~~l~~il~~ 310 (396)
T 4eut_A 289 ADQEKCWGFDQFFAETSDILHR 310 (396)
T ss_dssp CCTTTSCCHHHHHHHHHHHHTC
T ss_pred cChhhhccHHHHHHHHHHHhhc
Confidence 9999999999999999887654
No 211
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=99.91 E-value=1.2e-24 Score=218.40 Aligned_cols=192 Identities=20% Similarity=0.332 Sum_probs=148.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+..+..++|||++++++++. .+..++||||+++++|.+++.... ..+++..+..++.++++|++|||.
T Consensus 53 ~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---- 127 (279)
T 1qpc_A 53 DAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE---- 127 (279)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 35667999999999999999999876 445789999999999999997532 258999999999999999999995
Q ss_pred CCeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh-C
Q 040540 526 APIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT-R 578 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t-g 578 (669)
.+++|+|+++.. ......|+..|+|||+..+..++.++||||||+++|||+| |
T Consensus 128 ~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g 207 (279)
T 1qpc_A 128 RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 207 (279)
T ss_dssp TTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTT
T ss_pred CCeeccCCCHhhEEEcCCCCEEECCCcccccccCcccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCC
Confidence 479999998531 0011235678999999988889999999999999999999 8
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIK 658 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~ 658 (669)
+.||.... ...+...+....... .+...+..+.+++.+|+..||++|||+.++++.|+++.
T Consensus 208 ~~p~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~ 268 (279)
T 1qpc_A 208 RIPYPGMT--NPEVIQNLERGYRMV-----------------RPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFF 268 (279)
T ss_dssp CCSSTTCC--HHHHHHHHHTTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCcccC--HHHHHHHHhcccCCC-----------------CcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHH
Confidence 99986532 112222222211110 01122346789999999999999999999999999987
Q ss_pred HHhh
Q 040540 659 VKFL 662 (669)
Q Consensus 659 ~~~~ 662 (669)
....
T Consensus 269 ~~~~ 272 (279)
T 1qpc_A 269 TATE 272 (279)
T ss_dssp HHC-
T ss_pred Hhcc
Confidence 6643
No 212
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=3.7e-23 Score=208.16 Aligned_cols=201 Identities=23% Similarity=0.245 Sum_probs=98.1
Q ss_pred ccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCC
Q 040540 71 FGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLE 150 (669)
Q Consensus 71 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 150 (669)
+.++++++++++++|.++ .+|..+. +.++.|+|++|.+.+..|..|.++++|++|+|++|.+++..+. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 344555555555555554 2333332 3455555555555544455555555555555555555532221 4445555
Q ss_pred eeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCC
Q 040540 151 MLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQ 230 (669)
Q Consensus 151 ~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 230 (669)
+|++++|.+. .+|..+..+++|++|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 5555555444 344445555555555555555554444555555555555555555554444444444555555555554
Q ss_pred CccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCC
Q 040540 231 LSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNS 279 (669)
Q Consensus 231 l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~ 279 (669)
++ .+|...+..+++|++|++++|++. .+|..+....+|+.+++++|.
T Consensus 160 l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred CC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 44 333333333444555555544443 233333333444444444443
No 213
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=99.91 E-value=1.4e-24 Score=222.70 Aligned_cols=185 Identities=18% Similarity=0.205 Sum_probs=144.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++++|.+++.. ...+++..+..++.++++|++|||..
T Consensus 60 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~aL~~lH~~---- 134 (321)
T 2a2a_A 60 EEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQ-KESLSEEEATSFIKQILDGVNYLHTK---- 134 (321)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHT-CSCEEHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEEcCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 3467899999999999999999999988899999999999999999975 35689999999999999999999954
Q ss_pred CeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+++.. ......||+.|+|||++.+..++.++|||||||++|||+||
T Consensus 135 ~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g 214 (321)
T 2a2a_A 135 KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 214 (321)
T ss_dssp TEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred CeecCCCChHHEEEecCCCCcCCEEEccCccceecCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHC
Confidence 79999998531 01122489999999999888899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||..... ......+...... . ++ ......+..+.+++.+|++.||++|||+.|+++
T Consensus 215 ~~pf~~~~~--~~~~~~i~~~~~~-~----~~---------~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 215 ASPFLGDTK--QETLANITSVSYD-F----DE---------EFFSHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp CCSSCCSSH--HHHHHHHHTTCCC-C----CH---------HHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred CCCCCCCCH--HHHHHHHHhcccc-c----Ch---------hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 999965321 1111111111000 0 00 001223456789999999999999999999986
No 214
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=99.91 E-value=1.6e-24 Score=217.14 Aligned_cols=184 Identities=17% Similarity=0.235 Sum_probs=144.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|+|++++++++......++||||+++++|.+++.. ...+++.....++.++++|++|||. .
T Consensus 50 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~i~~~l~~lH~----~ 124 (276)
T 2yex_A 50 ENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLHG----I 124 (276)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSBT-TTBCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEecCCCcHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 3456789999999999999999999888888999999999999999974 3468999999999999999999995 4
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+++.. ......||+.|+|||+..+..+ +.++||||||+++|||+||
T Consensus 125 ~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g 204 (276)
T 2yex_A 125 GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAG 204 (276)
T ss_dssp TEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHS
T ss_pred CeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhC
Confidence 79999998531 0112358999999999987664 7899999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||.........+..|...... . +.+......+.+++.+|++.||++|||+.|+++
T Consensus 205 ~~p~~~~~~~~~~~~~~~~~~~~------~-----------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 205 ELPWDQPSDSCQEYSDWKEKKTY------L-----------NPWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp SCCCSCSCTTSHHHHHHHTTCTT------S-----------TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCCCchHHHHHHHhhhcccc------c-----------CchhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 99997644333333333221100 0 001123345789999999999999999999975
No 215
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=99.91 E-value=1.1e-24 Score=228.17 Aligned_cols=181 Identities=18% Similarity=0.206 Sum_probs=137.5
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..+ +|||++++++++......++||||+++|+|.+++... ..+++..+..++.+++.||+|||..
T Consensus 98 ~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH~~---- 172 (396)
T 4dc2_A 98 WVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ-RKLPEEHARFYSAEISLALNYLHER---- 172 (396)
T ss_dssp HHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEEEEcCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 355677777766 8999999999999999999999999999999999753 4589999999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|+|||+|+.. ...+.+||+.|+|||++.+..++.++||||+||++|||++|+.|
T Consensus 173 givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~P 252 (396)
T 4dc2_A 173 GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSP 252 (396)
T ss_dssp TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CEEeccCCHHHEEECCCCCEEEeecceeeecccCCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCC
Confidence 79999999531 12234699999999999999999999999999999999999999
Q ss_pred CCcCCCCCc---cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 582 TDEMFTGEM---SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 582 ~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|........ ....++...+ ....+ ..+......+.+++.+||+.||.+||++
T Consensus 253 f~~~~~~~~~~~~~~~~~~~~i-------~~~~~-------~~p~~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 253 FDIVGSSDNPDQNTEDYLFQVI-------LEKQI-------RIPRSLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp STTTTC------CCHHHHHHHH-------HHCCC-------CCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred CcccccccccchhhHHHHHHHH-------hcccc-------CCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence 964321110 0011111000 00000 0011234567899999999999999996
No 216
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=99.90 E-value=1.4e-24 Score=218.58 Aligned_cols=185 Identities=17% Similarity=0.227 Sum_probs=144.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|+|++++++++......++||||+++|+|.+++... ..+++.....++.++++|+.|||..
T Consensus 50 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~---- 124 (284)
T 3kk8_A 50 QKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR-EFYSEADASHCIQQILESIAYCHSN---- 124 (284)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 34667899999999999999999999888899999999999999998753 4589999999999999999999954
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+++|+|+++.. ......||+.|+|||+..+..++.++||||+|+++|||++|+
T Consensus 125 ~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~ 204 (284)
T 3kk8_A 125 GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGY 204 (284)
T ss_dssp TEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSS
T ss_pred CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCC
Confidence 79999998531 011235899999999999888999999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||.... ...+...+........ . +........+.+++.+|++.||++|||+.|+++
T Consensus 205 ~pf~~~~--~~~~~~~~~~~~~~~~----~----------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 205 PPFWDED--QHRLYAQIKAGAYDYP----S----------PEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp CSSCCSS--HHHHHHHHHHTCCCCC----T----------TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCCc--hhHHHHHHHhccccCC----c----------hhhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 9996532 1112222222111100 0 001223356789999999999999999999976
No 217
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.90 E-value=8.4e-25 Score=234.72 Aligned_cols=182 Identities=20% Similarity=0.159 Sum_probs=138.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+.++..++|||++++++++...+..++|||||++|+|.+++... ..+++.....++.++++||+|||. ..
T Consensus 193 ~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~---~~ 268 (446)
T 4ejn_A 193 AHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE-RVFSEDRARFYGAEIVSALDYLHS---EK 268 (446)
T ss_dssp --------CCCCCSCTTSCCEEEEEEETTEEEEEECCCSSCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHH---HT
T ss_pred HHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEEeeCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHhh---cC
Confidence 34567888999999999999999999988999999999999999999753 468999999999999999999995 14
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||++|+.|
T Consensus 269 giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~P 348 (446)
T 4ejn_A 269 NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 348 (446)
T ss_dssp CCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CEEECCCCHHHEEECCCCCEEEccCCCceeccCCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCC
Confidence 79999999531 11233589999999999988999999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
|.... ...+...+..... .. +......+.+++.+||+.||.+|| +++|+++
T Consensus 349 f~~~~--~~~~~~~i~~~~~-~~-----------------p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 349 FYNQD--HEKLFELILMEEI-RF-----------------PRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp SCCSS--HHHHHHHHHHCCC-CC-----------------CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred CCCCC--HHHHHHHHHhCCC-CC-----------------CccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 96532 1112222111100 00 112234578999999999999999 9999875
No 218
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=99.90 E-value=1.3e-24 Score=218.74 Aligned_cols=193 Identities=18% Similarity=0.221 Sum_probs=147.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++......++||||+++++|.+++... ..+++..+..++.++++|++|||. .
T Consensus 53 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~----~ 127 (283)
T 3bhy_A 53 EEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEK-ESLTEDEATQFLKQILDGVHYLHS----K 127 (283)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCeeehhheecCCCeEEEEEeecCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 35677999999999999999999999888899999999999999999753 458999999999999999999995 4
Q ss_pred CeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+++... .....||+.|+|||++.+..++.++||||||+++|||++|
T Consensus 128 ~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g 207 (283)
T 3bhy_A 128 RIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 207 (283)
T ss_dssp TEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC--------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred CccCCCCChHHEEEecCCCCCCceEEEecccceeccCCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHC
Confidence 899999985310 0112478899999999888899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH--HHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA--KLKK 656 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~--~l~~ 656 (669)
+.||..... ......+..... . ... ......+..+.+++.+||+.||++||++.|+++ .++.
T Consensus 208 ~~p~~~~~~--~~~~~~~~~~~~-~--------~~~-----~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~ 271 (283)
T 3bhy_A 208 ASPFLGETK--QETLTNISAVNY-D--------FDE-----EYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKA 271 (283)
T ss_dssp SCTTCCSSH--HHHHHHHHTTCC-C--------CCH-----HHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHH
T ss_pred CCCCCCcch--HHHHHHhHhccc-C--------Ccc-----hhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHH
Confidence 999865321 111111111100 0 000 011223456789999999999999999999987 4666
Q ss_pred hHHH
Q 040540 657 IKVK 660 (669)
Q Consensus 657 ~~~~ 660 (669)
+...
T Consensus 272 ~~~~ 275 (283)
T 3bhy_A 272 IRRR 275 (283)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 5544
No 219
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=99.90 E-value=5.9e-25 Score=224.10 Aligned_cols=193 Identities=16% Similarity=0.179 Sum_probs=145.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++...+..++||||+++++|.+++... ..+++..+..++.++++|++|||..
T Consensus 79 ~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---- 153 (309)
T 2h34_A 79 TRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQ-GPLAPPRAVAIVRQIGSALDAAHAA---- 153 (309)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCCCEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEEEEecCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 45667899999999999999999999888999999999999999999853 4589999999999999999999954
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+++|+|+++.. ......||+.|+|||++.+..++.++||||||+++|||+||+.
T Consensus 154 ~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~ 233 (309)
T 2h34_A 154 GATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSP 233 (309)
T ss_dssp TCCCSCCCGGGEEECTTSCEEECSCCC----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSC
T ss_pred cCCcCCCChHHEEEcCCCCEEEecCccCccccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCC
Confidence 79999998531 0112358899999999998889999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-CHHHHHHHHHHhHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-HMTDAAAKLKKIKV 659 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-s~~~v~~~l~~~~~ 659 (669)
||..... ..+...+....+. ... .+...+..+.+++.+||+.||++|| +++++++.|+++..
T Consensus 234 pf~~~~~--~~~~~~~~~~~~~--~~~-------------~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~ 296 (309)
T 2h34_A 234 PYQGDQL--SVMGAHINQAIPR--PST-------------VRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALA 296 (309)
T ss_dssp SSCSCHH--HHHHHHHHSCCCC--GGG-------------TSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC
T ss_pred CCCCchH--HHHHHHhccCCCC--ccc-------------cCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHH
Confidence 9975221 1111111111110 000 0122334578999999999999999 99999999998754
Q ss_pred Hh
Q 040540 660 KF 661 (669)
Q Consensus 660 ~~ 661 (669)
..
T Consensus 297 ~~ 298 (309)
T 2h34_A 297 TA 298 (309)
T ss_dssp --
T ss_pred hh
Confidence 43
No 220
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=99.90 E-value=9.4e-25 Score=229.73 Aligned_cols=183 Identities=19% Similarity=0.278 Sum_probs=138.1
Q ss_pred ccCchhhhhhcccc--ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVR--HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+.++..++ |+|++++++++......++||| +.+++|.+++... ..+++.++..|+.++++||+|||.
T Consensus 99 ~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E-~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~lH~--- 173 (390)
T 2zmd_A 99 DSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQ--- 173 (390)
T ss_dssp HHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEE-CCSEEHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEe-cCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH---
Confidence 45678999999986 5999999999998889999999 5678999999864 468888999999999999999994
Q ss_pred CCCeeecCCCCcc--------------------------cccccccccccCccccccC-----------CCcCccccchh
Q 040540 525 SAPIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSE-----------GIVSAKCDVYS 567 (669)
Q Consensus 525 ~~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~s 567 (669)
.+|+|||+|+.. .....+||+.|+|||++.+ ..++.++||||
T Consensus 174 -~~ivHrDlkp~NIll~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwS 252 (390)
T 2zmd_A 174 -HGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS 252 (390)
T ss_dssp -TTCCCCCCCGGGEEESSSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHH
T ss_pred -CCeeecCCCHHHEEEECCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHH
Confidence 479999999541 0123359999999998764 36889999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 568 YGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|||++|||++|+.||...... ...+............ +......+.+++.+||+.||.+|||+
T Consensus 253 lGvil~ell~G~~Pf~~~~~~----~~~~~~~~~~~~~~~~-------------~~~~~~~~~~li~~~L~~dP~~Rps~ 315 (390)
T 2zmd_A 253 LGCILYYMTYGKTPFQQIINQ----ISKLHAIIDPNHEIEF-------------PDIPEKDLQDVLKCCLKRDPKQRISI 315 (390)
T ss_dssp HHHHHHHHHHSSCTTTTCCCH----HHHHHHHHCTTSCCCC-------------CCCSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred HHHHHHHHHHCCCcchhhhHH----HHHHHHHhCccccCCC-------------CccchHHHHHHHHHHcccChhhCCCH
Confidence 999999999999999653211 1111111111000000 01112457899999999999999999
Q ss_pred HHHHH
Q 040540 648 TDAAA 652 (669)
Q Consensus 648 ~~v~~ 652 (669)
.|+++
T Consensus 316 ~ell~ 320 (390)
T 2zmd_A 316 PELLA 320 (390)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 99975
No 221
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=99.90 E-value=1.3e-24 Score=219.82 Aligned_cols=200 Identities=17% Similarity=0.160 Sum_probs=142.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++......++||||+++ ++.+.+......+++.....++.++++|++|||.. +
T Consensus 47 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~----~ 121 (292)
T 3o0g_A 47 SALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR----N 121 (292)
T ss_dssp HHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEecCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC----C
Confidence 456789999999999999999999988899999999984 67777765566799999999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCC-cCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGI-VSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
|+|+|+|+.. ......||+.|+|||++.+.. ++.++||||+||++|||+||+.|
T Consensus 122 ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p 201 (292)
T 3o0g_A 122 VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRP 201 (292)
T ss_dssp EECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCC
T ss_pred eecCCCCHHHEEEcCCCCEEEeecccceecCCccccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCC
Confidence 9999999531 112235899999999987765 89999999999999999999988
Q ss_pred CCcCCCCCccHHHHHHHhCCC---Ccccccc-------ccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPH---RLSEVVD-------TNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAA 651 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~---~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~ 651 (669)
+.........+....+..... .+..... +..................+.+++.+|++.||++|||++|++
T Consensus 202 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l 281 (292)
T 3o0g_A 202 LFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEAL 281 (292)
T ss_dssp SCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHh
Confidence 654222222222222211110 0000000 000000000001123445678999999999999999999997
Q ss_pred H
Q 040540 652 A 652 (669)
Q Consensus 652 ~ 652 (669)
+
T Consensus 282 ~ 282 (292)
T 3o0g_A 282 Q 282 (292)
T ss_dssp T
T ss_pred c
Confidence 5
No 222
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=99.90 E-value=6.5e-25 Score=233.06 Aligned_cols=187 Identities=16% Similarity=0.179 Sum_probs=143.3
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|..++..++|||+++++++|......++|||||++|+|.+++.+....+++.....++.+++.||+|||. .
T Consensus 119 ~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~----~ 194 (437)
T 4aw2_A 119 ACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQ----L 194 (437)
T ss_dssp CCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHh----C
Confidence 346678899999999999999999999999999999999999999998755678999999999999999999995 4
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCcccccc-----CCCcCccccchhhHHHHHHH
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGS-----EGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gvil~el 575 (669)
+|+|||+|+.. .....+||+.|||||++. ...|+.++|||||||++|||
T Consensus 195 giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~el 274 (437)
T 4aw2_A 195 HYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEM 274 (437)
T ss_dssp TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHH
T ss_pred CeEecccCHHHeeEcCCCCEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHH
Confidence 79999999530 011246999999999986 45689999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC--CCCHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK--RMHMTDAAA 652 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~--Rps~~~v~~ 652 (669)
+||+.||....... .+...+........ +.. .......+.+++.+|++.+|++ ||+++|+++
T Consensus 275 ltG~~Pf~~~~~~~-~~~~i~~~~~~~~~-----p~~---------~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 275 LYGETPFYAESLVE-TYGKIMNHKERFQF-----PTQ---------VTDVSENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp HHSSCTTCCSSHHH-HHHHHHTHHHHCCC-----CSS---------CCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred HhCCCCCCCCChhH-HHHhhhhccccccC-----Ccc---------cccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 99999997532111 11111110000000 000 0112346789999999988888 999999875
No 223
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=99.90 E-value=1.7e-24 Score=217.41 Aligned_cols=180 Identities=19% Similarity=0.268 Sum_probs=141.9
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|||++++++++......++||||+++|+|.+++... ..+++..+..++.+++.|++|||. .+
T Consensus 55 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~-~~~~~~~~~~~~~qi~~~l~~LH~----~~ 129 (279)
T 3fdn_A 55 QLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANALSYCHS----KR 129 (279)
T ss_dssp HHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHT----TT
T ss_pred HHHHHHHHHHcCCCCCCcchhheEecCCEEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 4567899999999999999999999888899999999999999999753 458999999999999999999994 48
Q ss_pred eeecCCCCcc-----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 528 IIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 528 i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
++|+|+++.. ......||+.|+|||.+.+..++.++||||+|+++|||++|+.||..
T Consensus 130 i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~ 209 (279)
T 3fdn_A 130 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEA 209 (279)
T ss_dssp CEECCCCGGGEEECTTSCEEECSCCEESCC--------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCC
T ss_pred EecccCChHhEEEcCCCCEEEEeccccccCCcccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCC
Confidence 9999999541 11223589999999999888899999999999999999999999875
Q ss_pred CCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 585 MFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
... ......+.... ... +......+.+++.+||+.||.+|||+.|+++
T Consensus 210 ~~~--~~~~~~~~~~~-~~~-----------------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 257 (279)
T 3fdn_A 210 NTY--QETYKRISRVE-FTF-----------------PDFVTEGARDLISRLLKHNPSQRPMLREVLE 257 (279)
T ss_dssp SSH--HHHHHHHHHTC-CCC-----------------CTTSCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred CcH--HHHHHHHHhCC-CCC-----------------CCcCCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 321 11111111110 000 1112345689999999999999999999986
No 224
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=99.90 E-value=1.3e-24 Score=217.85 Aligned_cols=184 Identities=19% Similarity=0.232 Sum_probs=142.9
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||+++++|.+++... ..+++.....++.++++|++|||..
T Consensus 51 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~---- 125 (277)
T 3f3z_A 51 DRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHK-RVFRESDAARIMKDVLSAVAYCHKL---- 125 (277)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEeccCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 35667999999999999999999999988899999999999999998753 4589999999999999999999954
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+++|+|+++.. ......||+.|+|||++.+. ++.++||||+|+++|||+||+
T Consensus 126 ~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~ 204 (277)
T 3f3z_A 126 NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGY 204 (277)
T ss_dssp TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSS
T ss_pred CccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccchhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCC
Confidence 79999998531 01123589999999988654 899999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||..... ......+...... ... ......+..+.+++.+|++.||++|||+.|+++
T Consensus 205 ~p~~~~~~--~~~~~~~~~~~~~---------~~~-----~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 205 PPFSAPTD--SEVMLKIREGTFT---------FPE-----KDWLNVSPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp CSSCCSSH--HHHHHHHHHCCCC---------CCH-----HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred CCCCCCCH--HHHHHHHHhCCCC---------CCc-----hhhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 99975321 1121111111100 000 001133456789999999999999999999975
No 225
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=99.90 E-value=6.7e-25 Score=223.06 Aligned_cols=185 Identities=19% Similarity=0.261 Sum_probs=141.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++......++||||+++++|.+++......+++..+..++.++++|+.|||..
T Consensus 61 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---- 136 (302)
T 2j7t_A 61 EDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSK---- 136 (302)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcC----
Confidence 4566789999999999999999999988899999999999999999986556789999999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccc-----cCCCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYG-----SEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~-----~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+++.. ......||+.|+|||++ ....++.++|||||||++|||+
T Consensus 137 ~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~ 216 (302)
T 2j7t_A 137 RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMA 216 (302)
T ss_dssp TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHH
T ss_pred CcccCCCCHHHEEECCCCCEEEEECCCCccccccccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHh
Confidence 79999999541 01123589999999987 3566889999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||...... ..+........+. .. .+...+..+.+++.+||..||++|||+.|+++
T Consensus 217 ~g~~p~~~~~~~-~~~~~~~~~~~~~---------~~-------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 217 QIEPPHHELNPM-RVLLKIAKSDPPT---------LL-------TPSKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp HSSCTTTTSCHH-HHHHHHHHSCCCC---------CS-------SGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred cCCCCCccCCHH-HHHHHHhccCCcc---------cC-------CccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 999998753211 1111111111110 00 01122345789999999999999999999986
No 226
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=99.90 E-value=6.2e-25 Score=227.47 Aligned_cols=175 Identities=21% Similarity=0.180 Sum_probs=135.6
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..+ .|||++++++++......++||||+++|+|.+++... ..+++.....++.+++.||+|||..
T Consensus 69 ~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~---- 143 (353)
T 3txo_A 69 CTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKS-RRFDEARARFYAAEIISALMFLHDK---- 143 (353)
T ss_dssp HHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 345677778776 6999999999999999999999999999999999754 4589999999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|+|||+|+.. .....+||+.|+|||++.+..|+.++||||+||++|||++|+.|
T Consensus 144 givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~P 223 (353)
T 3txo_A 144 GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAP 223 (353)
T ss_dssp TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCS
T ss_pred CCcccCCCHHHEEECCCCCEEEccccceeecccCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCC
Confidence 79999999541 11233599999999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|.... ...+...+...... . +......+.+++.+|++.||.+||++
T Consensus 224 f~~~~--~~~~~~~i~~~~~~-~-----------------p~~~~~~~~~li~~lL~~dP~~R~~~ 269 (353)
T 3txo_A 224 FEAEN--EDDLFEAILNDEVV-Y-----------------PTWLHEDATGILKSFMTKNPTMRLGS 269 (353)
T ss_dssp SCCSS--HHHHHHHHHHCCCC-C-----------------CTTSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred CCCCC--HHHHHHHHHcCCCC-C-----------------CCCCCHHHHHHHHHHhhhCHHHccCC
Confidence 97532 11122211111000 0 11123457899999999999999998
No 227
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=99.90 E-value=8.4e-25 Score=226.44 Aligned_cols=183 Identities=20% Similarity=0.301 Sum_probs=137.6
Q ss_pred ccCchhhhhhccccc--cccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRH--RNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h--~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
..+..|+.++..++| +|++++++++......++||| +.+|+|.+++... ..+++.++..|+.++++||+|||..
T Consensus 52 ~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~al~~lH~~-- 127 (343)
T 3dbq_A 52 DSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQH-- 127 (343)
T ss_dssp HHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEC-CCSEEHHHHHHHS-CCCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEEe-CCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhC--
Confidence 456779999999976 999999999999999999999 4578999999864 4689999999999999999999954
Q ss_pred CCCeeecCCCCcc--------------------------cccccccccccCccccccC-----------CCcCccccchh
Q 040540 525 SAPIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSE-----------GIVSAKCDVYS 567 (669)
Q Consensus 525 ~~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~s 567 (669)
+|+|||+|+.. ......||+.|+|||++.+ ..++.++||||
T Consensus 128 --~iiHrDikp~NIll~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Diws 205 (343)
T 3dbq_A 128 --GIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS 205 (343)
T ss_dssp --TCCCCCCCGGGEEEETTEEEECCCSSSCCC------------CCCCSSCCHHHHHHCC-----------CCHHHHHHH
T ss_pred --CeecCCCCcceEEEECCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHH
Confidence 79999999541 0113359999999998754 56889999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 568 YGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|||++|||++|+.||.........+...+........ +......+.+++.+||+.||.+|||+
T Consensus 206 lG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~L~~dp~~Rpt~ 268 (343)
T 3dbq_A 206 LGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEF-----------------PDIPEKDLQDVLKCCLKRDPKQRISI 268 (343)
T ss_dssp HHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCC-----------------CCCSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred HHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCcccCC-----------------cccCCHHHHHHHHHHcCCChhHCCCH
Confidence 9999999999999997532211111111110000000 11112356899999999999999999
Q ss_pred HHHHH
Q 040540 648 TDAAA 652 (669)
Q Consensus 648 ~~v~~ 652 (669)
.|+++
T Consensus 269 ~e~l~ 273 (343)
T 3dbq_A 269 PELLA 273 (343)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99975
No 228
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=99.90 E-value=1e-24 Score=221.77 Aligned_cols=191 Identities=21% Similarity=0.247 Sum_probs=136.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc-------CCCccCHHHHHHHHHhHHhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS-------HNYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~-------~~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
+.+..|+..+..++|||++++++++...+..++||||+++|+|.+++.. ....+++..+..++.++++|+.||
T Consensus 58 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~l 137 (303)
T 2vwi_A 58 DELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYL 137 (303)
T ss_dssp --------CCCCCCCTTBCCEEEEEESSSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3566788899999999999999999988899999999999999999974 234589999999999999999999
Q ss_pred hcCCCCCCeeecCCCCccc------------------------------ccccccccccCccccccC-CCcCccccchhh
Q 040540 520 RHGHSSAPIIHCEGEDSVT------------------------------QTTTMATIGYMAPEYGSE-GIVSAKCDVYSY 568 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~~------------------------------~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~ 568 (669)
|.. +++|+|+++... .....||+.|+|||+..+ ..++.++|||||
T Consensus 138 H~~----~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~sl 213 (303)
T 2vwi_A 138 HKN----GQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSF 213 (303)
T ss_dssp HHT----TCCCCCCSGGGEEECTTCCEEECCCHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHH
T ss_pred HhC----CCCCCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHH
Confidence 954 799999985310 012258999999998865 568999999999
Q ss_pred HHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccc-cccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 569 GVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSE-VVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 569 Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
||++|||+||+.||...... ..........+..... ..++.. .......+.+++.+||+.||++||++
T Consensus 214 G~il~~l~~g~~pf~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~li~~~l~~dp~~Rps~ 282 (303)
T 2vwi_A 214 GITAIELATGAAPYHKYPPM--KVLMLTLQNDPPSLETGVQDKEM---------LKKYGKSFRKMISLCLQKDPEKRPTA 282 (303)
T ss_dssp HHHHHHHHHSSCTTTTSCGG--GHHHHHHTSSCCCTTC-----CC---------CCCCCHHHHHHHHHHCCSSGGGSCCH
T ss_pred HHHHHHHHhCCCCCccCchh--hHHHHHhccCCCccccccccchh---------hhhhhHHHHHHHHHHccCChhhCcCH
Confidence 99999999999999763221 1111111111111111 111111 11223457899999999999999999
Q ss_pred HHHHH
Q 040540 648 TDAAA 652 (669)
Q Consensus 648 ~~v~~ 652 (669)
.|+++
T Consensus 283 ~~ll~ 287 (303)
T 2vwi_A 283 AELLR 287 (303)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 99986
No 229
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=99.90 E-value=6.3e-25 Score=226.46 Aligned_cols=178 Identities=21% Similarity=0.210 Sum_probs=139.3
Q ss_pred Cchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
+..|..++..+ +|||++++++++......++||||+++|+|.+++... ..+++..+..++.+++.||+|||.. +
T Consensus 64 ~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~----~ 138 (345)
T 1xjd_A 64 TMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC-HKFDLSRATFYAAEIILGLQFLHSK----G 138 (345)
T ss_dssp HHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 44577777766 8999999999999999999999999999999999753 4589999999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+.. .....+||+.|+|||++.+..++.++||||+||++|||++|+.||
T Consensus 139 ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf 218 (345)
T 1xjd_A 139 IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPF 218 (345)
T ss_dssp CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred eEeCCCChhhEEECCCCCEEEeEChhhhhcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCC
Confidence 9999999530 112336899999999999888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH-HHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT-DAA 651 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~-~v~ 651 (669)
.... ...+...+....+. . +......+.+++.+|++.||++||++. |+.
T Consensus 219 ~~~~--~~~~~~~i~~~~~~-~-----------------p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 219 HGQD--EEELFHSIRMDNPF-Y-----------------PRWLEKEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp CCSS--HHHHHHHHHHCCCC-C-----------------CTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred CCCC--HHHHHHHHHhCCCC-C-----------------CcccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 7532 11122222111110 0 111234578999999999999999987 554
No 230
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=99.90 E-value=1.6e-24 Score=222.59 Aligned_cols=180 Identities=19% Similarity=0.161 Sum_probs=138.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++...+..++||||+++|+|.+++... ..+++.....++.+++.||+|||.. +
T Consensus 67 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~al~~lH~~----~ 141 (327)
T 3a62_A 67 HTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLERE-GIFMEDTACFYLAEISMALGHLHQK----G 141 (327)
T ss_dssp ----HHHHHHHCCCTTBCCEEEEEECSSCEEEEEECCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHhCCCCCccceeEEEEcCCEEEEEEeCCCCCcHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhC----C
Confidence 4567899999999999999999999999999999999999999999753 4578889999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||
T Consensus 142 ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf 221 (327)
T 3a62_A 142 IIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPF 221 (327)
T ss_dssp CCCCCCCTTTEEECTTSCEEECCCSCC----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred EEcccCCHHHeEECCCCcEEEEeCCcccccccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCC
Confidence 9999999541 011235899999999998888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
..... ......+...... . +......+.+++.+||+.||++|| ++.|+++
T Consensus 222 ~~~~~--~~~~~~i~~~~~~-~-----------------p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 222 TGENR--KKTIDKILKCKLN-L-----------------PPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp CCSSH--HHHHHHHHHTCCC-C-----------------CTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred CCCCH--HHHHHHHHhCCCC-C-----------------CCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 75321 1111111111000 0 112234578999999999999999 6667654
No 231
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=99.90 E-value=5.3e-25 Score=231.94 Aligned_cols=183 Identities=16% Similarity=0.181 Sum_probs=141.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|..++..++|||++++++++......++|||||++|+|.++++.. .+++.....++.+++.||+|||. .+
T Consensus 115 ~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~--~~~e~~~~~~~~qi~~aL~~LH~----~g 188 (410)
T 3v8s_A 115 FFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNY--DVPEKWARFYTAEVVLALDAIHS----MG 188 (410)
T ss_dssp THHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4567899999999999999999999999999999999999999999753 47888899999999999999995 47
Q ss_pred eeecCCCCcc--------------------------cccccccccccCccccccCCC----cCccccchhhHHHHHHHHh
Q 040540 528 IIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGI----VSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 528 i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~s~Gvil~el~t 577 (669)
|+|||+|+.. ...+.+||+.|+|||++.+.. |+.++|||||||++|||+|
T Consensus 189 ivHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~ 268 (410)
T 3v8s_A 189 FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLV 268 (410)
T ss_dssp EECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHH
T ss_pred eEeccCCHHHeeECCCCCEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHh
Confidence 9999999530 112346999999999987654 8899999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC--CCCHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK--RMHMTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~--Rps~~~v~~ 652 (669)
|+.||...... ......+..... ..++.....+..+.+++.+|+..+|.+ ||+++||++
T Consensus 269 G~~Pf~~~~~~-~~~~~i~~~~~~---------------~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 269 GDTPFYADSLV-GTYSKIMNHKNS---------------LTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp SSCTTCCSSHH-HHHHHHHTHHHH---------------CCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred CCCCCCCCChh-hHHHHHHhcccc---------------ccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 99999753211 011111110000 001111123456789999999999988 999999875
No 232
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=99.90 E-value=1.5e-24 Score=221.97 Aligned_cols=199 Identities=20% Similarity=0.226 Sum_probs=142.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC-----CCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-----NYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-----~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
.+..|+.++..++|||++++++++...+..++||||++ |+|.+++... ...+++..+..++.|+++||+|||.
T Consensus 49 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~- 126 (317)
T 2pmi_A 49 TAIREISLMKELKHENIVRLYDVIHTENKLTLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHE- 126 (317)
T ss_dssp HHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 45679999999999999999999999889999999998 6999998642 1358889999999999999999995
Q ss_pred CCCCCeeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHH
Q 040540 523 HSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~ 576 (669)
.+|+|||+|+.. ......||+.|+|||++.+ ..++.++|||||||++|||+
T Consensus 127 ---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~ 203 (317)
T 2pmi_A 127 ---NKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMI 203 (317)
T ss_dssp ---TTEECCCCCGGGEEECTTCCEEECCCSSCEETTSCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHH
T ss_pred ---CCeeeCCCChHHeEEcCCCCEEECcCccceecCCCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHH
Confidence 489999999531 0122358999999999876 45899999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHh-CC-CC-cccc-----ccccccc-------hhhhhhhhHHHHHHHHHHHhhcccCCC
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKES-LP-HR-LSEV-----VDTNLVR-------EEQAFSAKMDCLLSIMDLALDCCMESP 641 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~-~~-~~-~~~~-----~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~c~~~~P 641 (669)
||+.||...... ..+....... .+ .. +... ..+.+.. .......+......+.+++.+|++.||
T Consensus 204 ~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP 282 (317)
T 2pmi_A 204 TGKPLFPGTNDE-EQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNP 282 (317)
T ss_dssp HSSCSCCCSSHH-HHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSG
T ss_pred hCCCCCCCCChH-HHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCc
Confidence 999999753211 1111111111 01 00 0000 0000000 000000011234568899999999999
Q ss_pred CCCCCHHHHHH
Q 040540 642 DKRMHMTDAAA 652 (669)
Q Consensus 642 ~~Rps~~~v~~ 652 (669)
++|||+.|+++
T Consensus 283 ~~Rpt~~e~l~ 293 (317)
T 2pmi_A 283 DMRLSAKQALH 293 (317)
T ss_dssp GGSCCHHHHTT
T ss_pred ccCCCHHHHhC
Confidence 99999999875
No 233
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=99.90 E-value=2.6e-24 Score=234.02 Aligned_cols=183 Identities=21% Similarity=0.237 Sum_probs=143.7
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||+++++++|......++||||+++|+|.+++... ..+++..+..|+.++++||+|||.. +
T Consensus 82 ~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~----~ 156 (494)
T 3lij_A 82 KLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHR-MKFNEVDAAVIIKQVLSGVTYLHKH----N 156 (494)
T ss_dssp HHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 4567999999999999999999999999999999999999999998753 4589999999999999999999954 7
Q ss_pred eeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 528 IIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 528 i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
|+|||+|+.. ......||+.|+|||++. ..|+.++||||+||++|||++|+.
T Consensus 157 ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~ 235 (494)
T 3lij_A 157 IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYP 235 (494)
T ss_dssp EECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred ceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCC
Confidence 9999999531 112235899999999876 468999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||.... ...+...+...... .. .+.+...+..+.+++.+||+.||.+|||+.|+++
T Consensus 236 pf~~~~--~~~~~~~i~~~~~~-~~-------------~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 236 PFGGQT--DQEILRKVEKGKYT-FD-------------SPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp SSCCSS--HHHHHHHHHHTCCC-CC-------------SGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCCCC--HHHHHHHHHhCCCC-CC-------------chhcccCCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence 997532 11222222221110 00 0112233456789999999999999999999985
No 234
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=99.90 E-value=1.2e-24 Score=219.17 Aligned_cols=184 Identities=23% Similarity=0.252 Sum_probs=140.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++.. .+..+++..+..|+.++++||+|||..
T Consensus 65 ~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~- 143 (285)
T 3is5_A 65 EQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ- 143 (285)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence 4566799999999999999999999988889999999999999999864 235689999999999999999999954
Q ss_pred CCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 524 SSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 524 ~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+++.. ......||+.|+|||++. ..++.++||||+||++|||+
T Consensus 144 ---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll 219 (285)
T 3is5_A 144 ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLL 219 (285)
T ss_dssp ---TCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHH
T ss_pred ---CEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHH
Confidence 79999998531 011234889999999875 45889999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||..... ..+........+... .. .......+.+++.+|++.||++|||+.||++
T Consensus 220 ~g~~pf~~~~~--~~~~~~~~~~~~~~~---------~~------~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 220 TGCLPFTGTSL--EEVQQKATYKEPNYA---------VE------CRPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp HSSCSSCCSSH--HHHHHHHHHCCCCCC---------C--------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred hCCCCCCCCCH--HHHHhhhccCCcccc---------cc------cCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 99999975321 112221111111100 00 0012345679999999999999999999975
No 235
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=99.90 E-value=1.8e-24 Score=220.62 Aligned_cols=175 Identities=15% Similarity=0.126 Sum_probs=133.5
Q ss_pred hhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCee
Q 040540 451 SECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPII 529 (669)
Q Consensus 451 ~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~ 529 (669)
.|...+... +|+|+++++++|......++||||+ +++|.+++...+..+++..+..|+.+++.||+|||.. +|+
T Consensus 105 ~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~----~iv 179 (311)
T 3p1a_A 105 AEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQ----GLV 179 (311)
T ss_dssp HHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT----TEE
T ss_pred HHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEEecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC----CEe
Confidence 344444444 8999999999999999999999999 5799999987666799999999999999999999954 799
Q ss_pred ecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcC
Q 040540 530 HCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEM 585 (669)
Q Consensus 530 h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~ 585 (669)
|+|+|+.. ......||+.|+|||++.+ .++.++|||||||++|||++|..|+...
T Consensus 180 H~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~ 258 (311)
T 3p1a_A 180 HLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG 258 (311)
T ss_dssp CCCCSGGGEEECGGGCEEECCCTTCEECC------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH
T ss_pred cCCCCHHHEEECCCCCEEEccceeeeecccCCCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence 99999541 1112348999999998876 6899999999999999999997765431
Q ss_pred CCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 586 FTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
. .|.. ..... ..+ ..+......+.+++.+|++.||++|||+.|+++
T Consensus 259 ----~---~~~~-~~~~~----~~~---------~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 259 ----E---GWQQ-LRQGY----LPP---------EFTAGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp ----H---HHHH-HTTTC----CCH---------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ----c---HHHH-HhccC----CCc---------ccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 0 1110 00000 000 012234456889999999999999999999975
No 236
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=99.90 E-value=4e-25 Score=225.67 Aligned_cols=190 Identities=18% Similarity=0.272 Sum_probs=140.0
Q ss_pred cCchhhhhhccccccccceecccccccccc----ceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFK----ALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~----~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
.+..|+..+..++|||++++++++...... ++||||+++|+|.+++... ..+++.+...++.++++||+|||..
T Consensus 58 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~- 135 (311)
T 3ork_A 58 RFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVIADACQALNFSHQN- 135 (311)
T ss_dssp HHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEEEEECCCEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence 466789999999999999999988765544 8999999999999999753 4589999999999999999999954
Q ss_pred CCCCeeecCCCCcc----------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 524 SSAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 524 ~~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
+++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||
T Consensus 136 ---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~l 212 (311)
T 3ork_A 136 ---GIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEV 212 (311)
T ss_dssp ---TCCCCCCCGGGEEEETTSCEEECCCSCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred ---CCCcCCCCHHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHH
Confidence 79999999531 00112489999999999988899999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHH-HHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDA-AAKL 654 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v-~~~l 654 (669)
+||+.||....... ............ + .......+..+.+++.+||+.||++||++.++ ...+
T Consensus 213 l~g~~pf~~~~~~~-~~~~~~~~~~~~-------~--------~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l 276 (311)
T 3ork_A 213 LTGEPPFTGDSPVS-VAYQHVREDPIP-------P--------SARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADL 276 (311)
T ss_dssp HHSSCSCCCSSHHH-HHHHHHHCCCCC-------H--------HHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHH
T ss_pred HhCCCCCCCCChHH-HHHHHhcCCCCC-------c--------ccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHH
Confidence 99999996532111 011111110000 0 00112234567899999999999999965554 4555
Q ss_pred HHhH
Q 040540 655 KKIK 658 (669)
Q Consensus 655 ~~~~ 658 (669)
.++.
T Consensus 277 ~~~~ 280 (311)
T 3ork_A 277 VRVH 280 (311)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 237
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=99.90 E-value=1.9e-24 Score=218.27 Aligned_cols=185 Identities=21% Similarity=0.340 Sum_probs=139.4
Q ss_pred ccCchhhhhhccccccccceecccccc----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+.+..|+.++..++|||++++++++.. ....++||||+++|+|.+++... ..+++.....++.++++|+.|||..
T Consensus 70 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~ 148 (290)
T 1t4h_A 70 QRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF-KVMKIKVLRSWCRQILKGLQFLHTR 148 (290)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEEEEecCCCCHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 346679999999999999999998754 45578999999999999999753 4588999999999999999999954
Q ss_pred CCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 523 HSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
.++++|+|+++.. ......||+.|+|||++.+ .++.++||||+||++|||+||
T Consensus 149 --~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g 225 (290)
T 1t4h_A 149 --TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATS 225 (290)
T ss_dssp --SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHS
T ss_pred --CCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccccccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhC
Confidence 2349999998541 0112348999999998764 589999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||..... ................. +......+.+++.+||+.||.+|||+.|+++
T Consensus 226 ~~pf~~~~~----~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 226 EYPYSECQN----AAQIYRRVTSGVKPASF-------------DKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp SCTTTTCSS----HHHHHHHHTTTCCCGGG-------------GGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCCCCcCc----HHHHHHHHhccCCcccc-------------CCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 999965321 11121111111000000 1122345789999999999999999999975
No 238
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=99.90 E-value=3.1e-24 Score=233.00 Aligned_cols=183 Identities=20% Similarity=0.221 Sum_probs=143.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++......++||||+++|+|.+.+... ..+++.....|+.++++|+.|||.. +
T Consensus 67 ~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~i~~qi~~al~~lH~~----~ 141 (486)
T 3mwu_A 67 TILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR-KRFSEHDAARIIKQVFSGITYMHKH----N 141 (486)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEEcCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 4567999999999999999999999999999999999999999998754 4589999999999999999999954 7
Q ss_pred eeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCC
Q 040540 528 IIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 528 i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
|+|||+|+.. .....+||+.|+|||++.+ .|+.++||||+||++|||++|+.
T Consensus 142 ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~ 220 (486)
T 3mwu_A 142 IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTP 220 (486)
T ss_dssp CCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSC
T ss_pred eEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCC
Confidence 9999998531 0112358999999999875 58999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||.... ...+...+....... ..+.+...+..+.+++.+||+.||.+|||+.|+++
T Consensus 221 pf~~~~--~~~~~~~i~~~~~~~--------------~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 221 PFYGKN--EYDILKRVETGKYAF--------------DLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp SSCCSS--HHHHHHHHHHTCCCS--------------CSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred CCCCCC--HHHHHHHHHhCCCCC--------------CCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 996532 112222222211000 00112334556789999999999999999999986
No 239
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.90 E-value=1.5e-24 Score=224.84 Aligned_cols=186 Identities=22% Similarity=0.236 Sum_probs=139.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC------------------------------
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH------------------------------ 496 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~------------------------------ 496 (669)
+.+..|+.++..++|||++++++++......++||||+++|+|.+++...
T Consensus 73 ~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (345)
T 3hko_A 73 ERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAING 152 (345)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCcceeehhhccCCeEEEEEeCCCCCcHHHHHHHhhccccccccccccccccccccccccccccc
Confidence 45677999999999999999999999999999999999999999998520
Q ss_pred ---------CCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc------------------------------
Q 040540 497 ---------NYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV------------------------------ 537 (669)
Q Consensus 497 ---------~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~------------------------------ 537 (669)
...+++.....|+.++++|++|||.. +++|+|+|+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~----~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~ 228 (345)
T 3hko_A 153 SIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQ----GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEY 228 (345)
T ss_dssp CC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHHT----TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHHHHHC----CccccCCChhhEEEecCCCceEEEeeccccccccccCcccc
Confidence 11234566778999999999999954 79999998531
Q ss_pred -cccccccccccCccccccC--CCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccc
Q 040540 538 -TQTTTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVR 614 (669)
Q Consensus 538 -~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 614 (669)
......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... ..+.......... .
T Consensus 229 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~~~~~~~~~--~--------- 296 (345)
T 3hko_A 229 YGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDA-DTISQVLNKKLCF--E--------- 296 (345)
T ss_dssp ------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHCCCCT--T---------
T ss_pred ccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChH-HHHHHHHhccccc--C---------
Confidence 0112358999999999865 66899999999999999999999999753211 1111111111100 0
Q ss_pred hhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 615 EEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 615 ~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.+........+.+++.+||+.||.+||++.|+++
T Consensus 297 ----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 330 (345)
T 3hko_A 297 ----NPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQ 330 (345)
T ss_dssp ----SGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred ----CcccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 0011223456789999999999999999999976
No 240
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=99.90 E-value=2.8e-24 Score=219.79 Aligned_cols=185 Identities=21% Similarity=0.222 Sum_probs=145.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|||++++++++......++||||+++|+|.+++......+++.....++.++++|+.|||..
T Consensus 69 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---- 144 (314)
T 3com_A 69 QEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFM---- 144 (314)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 3566789999999999999999999888888999999999999999975556789999999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......||+.|+|||++.+..++.++||||||+++|||++|+.|
T Consensus 145 ~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p 224 (314)
T 3com_A 145 RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPP 224 (314)
T ss_dssp TEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCT
T ss_pred CCcCCCcCHHHEEECCCCCEEEeecccchhhhhhccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCC
Confidence 79999998531 01223589999999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|..... ...........+... . .+......+.+++.+||..||.+|||+.++++
T Consensus 225 ~~~~~~--~~~~~~~~~~~~~~~--------~-------~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 225 YADIHP--MRAIFMIPTNPPPTF--------R-------KPELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp TTTSCH--HHHHHHHHHSCCCCC--------S-------SGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCCCCh--HHHHHHHhcCCCccc--------C-------CcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 875321 111111111111110 0 01122346789999999999999999999976
No 241
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=99.90 E-value=1.8e-24 Score=234.85 Aligned_cols=184 Identities=22% Similarity=0.262 Sum_probs=145.2
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+.++..++|||++++++++......++||||+.+|+|.+++... ..+++..+..|+.++++|+.|||..
T Consensus 71 ~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---- 145 (484)
T 3nyv_A 71 ESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISR-KRFSEVDAARIIRQVLSGITYMHKN---- 145 (484)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTC-SCCBHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 35668999999999999999999999999999999999999999999754 4589999999999999999999954
Q ss_pred CeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+|+|||+|+... .....||+.|+|||++.+ .++.++||||+||++|||++|+
T Consensus 146 ~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~ 224 (484)
T 3nyv_A 146 KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGC 224 (484)
T ss_dssp TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSS
T ss_pred CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCC
Confidence 799999995410 112258999999998865 6899999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||.... ...+...+....... ..+.+...+..+.+++.+|++.||.+|||+.|+++
T Consensus 225 ~pf~~~~--~~~~~~~i~~~~~~~--------------~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 225 PPFNGAN--EYDILKKVEKGKYTF--------------ELPQWKKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp CSSCCSS--HHHHHHHHHHCCCCC--------------CSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCCCC--HHHHHHHHHcCCCCC--------------CCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 9997532 222222222211100 00112334566889999999999999999999975
No 242
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=99.90 E-value=1.6e-24 Score=223.77 Aligned_cols=181 Identities=18% Similarity=0.207 Sum_probs=137.2
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..+ +|||++++++++......++||||+++|+|.+++... ..+++.....++.+++.||+|||. .
T Consensus 55 ~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH~----~ 129 (345)
T 3a8x_A 55 WVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ-RKLPEEHARFYSAEISLALNYLHE----R 129 (345)
T ss_dssp HHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 355678888777 8999999999999989999999999999999999753 458999999999999999999995 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|+|||+|+.. .....+||+.|+|||++.+..++.++||||+||++|||++|+.|
T Consensus 130 ~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~p 209 (345)
T 3a8x_A 130 GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSP 209 (345)
T ss_dssp TCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CceecCCCHHHEEECCCCCEEEEeccccccccCCCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCC
Confidence 79999999530 11233699999999999988899999999999999999999999
Q ss_pred CCcCCCCCc---cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 582 TDEMFTGEM---SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 582 ~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|........ .....+...+ ..... ..+......+.+++.+||+.||.+||++
T Consensus 210 f~~~~~~~~~~~~~~~~~~~~i-------~~~~~-------~~p~~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 210 FDIVGSSDNPDQNTEDYLFQVI-------LEKQI-------RIPRSLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp TTTTTC-------CHHHHHHHH-------HHCCC-------CCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred cCCcccccccccccHHHHHHHH-------HcCCC-------CCCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence 965321110 0001110000 00000 0011234467899999999999999996
No 243
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=99.90 E-value=1.5e-24 Score=226.00 Aligned_cols=181 Identities=23% Similarity=0.213 Sum_probs=135.4
Q ss_pred Cchhhhh-hccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEV-LRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~-l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
+..|... +..++|||++++++++...+..++||||+++|+|.+++.+. ..+++.....++.+++.||+|||. .+
T Consensus 85 ~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~----~g 159 (373)
T 2r5t_A 85 IMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRE-RCFLEPRARFYAAEIASALGYLHS----LN 159 (373)
T ss_dssp ------CCBCCCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 3445544 56789999999999999999999999999999999999753 457888888999999999999995 47
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+.. .....+||+.|+|||++.+..++.++|||||||++|||++|+.||
T Consensus 160 ivHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf 239 (373)
T 2r5t_A 160 IVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPF 239 (373)
T ss_dssp CCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred ceecCCCHHHEEECCCCCEEEeeCccccccccCCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCC
Confidence 9999999530 112346999999999999888999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
..... ..+.+.+... +... +......+.+++.+|++.||.+||++.+.++.+
T Consensus 240 ~~~~~--~~~~~~i~~~-~~~~-----------------~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i 291 (373)
T 2r5t_A 240 YSRNT--AEMYDNILNK-PLQL-----------------KPNITNSARHLLEGLLQKDRTKRLGAKDDFMEI 291 (373)
T ss_dssp CCSBH--HHHHHHHHHS-CCCC-----------------CSSSCHHHHHHHHHHTCSSGGGSTTTTTTHHHH
T ss_pred CCCCH--HHHHHHHHhc-ccCC-----------------CCCCCHHHHHHHHHHcccCHHhCCCCCCCHHHH
Confidence 65321 1111111111 0000 111234578999999999999999986544443
No 244
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=99.90 E-value=1.9e-24 Score=221.18 Aligned_cols=186 Identities=23% Similarity=0.276 Sum_probs=140.6
Q ss_pred cCchhhhhhcc-ccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRN-VRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~-l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+..+.+ .+|||++++++++...+..++||||+++|+|.+++... ..+++.....++.++++||+|||..
T Consensus 56 ~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---- 130 (316)
T 2ac3_A 56 RVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKR-RHFNELEASVVVQDVASALDFLHNK---- 130 (316)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEcCCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 45678888887 47999999999999888999999999999999999753 4589999999999999999999954
Q ss_pred CeeecCCCCccc-----------------------------------ccccccccccCccccccC-----CCcCccccch
Q 040540 527 PIIHCEGEDSVT-----------------------------------QTTTMATIGYMAPEYGSE-----GIVSAKCDVY 566 (669)
Q Consensus 527 ~i~h~d~~~~~~-----------------------------------~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~ 566 (669)
+++|+|+|+... .....||+.|+|||++.. ..++.++|||
T Consensus 131 ~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Diw 210 (316)
T 2ac3_A 131 GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLW 210 (316)
T ss_dssp TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHH
T ss_pred CceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccH
Confidence 799999985310 001238999999999864 4588999999
Q ss_pred hhHHHHHHHHhCCCCCCcCCCCCc-------------cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHH
Q 040540 567 SYGVLLMETFTRKRPTDEMFTGEM-------------SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLA 633 (669)
Q Consensus 567 s~Gvil~el~tg~~p~~~~~~~~~-------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 633 (669)
||||++|||+||+.||........ .+...+..... .... ..+......+.+++
T Consensus 211 slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~-----~~~~~~~~~~~~li 276 (316)
T 2ac3_A 211 SLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKY---------EFPD-----KDWAHISCAAKDLI 276 (316)
T ss_dssp HHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCC---------CCCH-----HHHTTSCHHHHHHH
T ss_pred hHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCc---------ccCc-----hhcccCCHHHHHHH
Confidence 999999999999999976432210 01111111100 0000 00122345688999
Q ss_pred hhcccCCCCCCCCHHHHHH
Q 040540 634 LDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 634 ~~c~~~~P~~Rps~~~v~~ 652 (669)
.+|++.||++|||+.|+++
T Consensus 277 ~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 277 SKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp HHHSCSSTTTSCCHHHHHH
T ss_pred HHHhhCChhhCCCHHHHhc
Confidence 9999999999999999986
No 245
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=99.90 E-value=2.5e-24 Score=234.74 Aligned_cols=184 Identities=22% Similarity=0.254 Sum_probs=144.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++|||||++|+|.+++... ..+++..+..|+.+++.||+|||..
T Consensus 91 ~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---- 165 (504)
T 3q5i_A 91 EEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINR-HKFDECDAANIMKQILSGICYLHKH---- 165 (504)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 34667999999999999999999999999999999999999999999753 4589999999999999999999954
Q ss_pred CeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+|+|||+|+.. ......||+.|+|||++. ..++.++||||+||++|||++|+
T Consensus 166 ~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~ 244 (504)
T 3q5i_A 166 NIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGY 244 (504)
T ss_dssp TEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSS
T ss_pred CeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCC
Confidence 79999998531 112235899999999876 45899999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||.... ...+...+...... ...+.+...+..+.+++.+|++.||.+|||+.|+++
T Consensus 245 ~pf~~~~--~~~~~~~i~~~~~~--------------~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 245 PPFGGQN--DQDIIKKVEKGKYY--------------FDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp CSSCCSS--HHHHHHHHHHCCCC--------------CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCCCCC--HHHHHHHHHcCCCC--------------CCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 9997532 11122222211100 001112334567889999999999999999999975
No 246
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=99.90 E-value=2.6e-24 Score=233.93 Aligned_cols=183 Identities=21% Similarity=0.252 Sum_probs=144.2
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..++|||++++++++......++||||+++|+|.+++...+ ..+++..+..++.+++.||+|||..
T Consensus 230 ~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~---- 305 (576)
T 2acx_A 230 MALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE---- 305 (576)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 35678999999999999999999999899999999999999999997643 3489999999999999999999954
Q ss_pred CeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 527 PIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+|+|||+|+.. .....+||+.|+|||++.+..|+.++|||||||++|||++|+.||
T Consensus 306 gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF 385 (576)
T 2acx_A 306 RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPF 385 (576)
T ss_dssp TEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSS
T ss_pred CEeccCCchheEEEeCCCCeEEEecccceecccCccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCC
Confidence 79999999530 112346999999999999888999999999999999999999999
Q ss_pred CcCCCCCc--cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 583 DEMFTGEM--SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
........ .+...+.. .+... +...+..+.+++.+|++.||.+|| +++||++
T Consensus 386 ~~~~~~~~~~~i~~~i~~-~~~~~-----------------p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 386 QQRKKKIKREEVERLVKE-VPEEY-----------------SERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp SCSSSCCCHHHHHHHHHH-CCCCC-----------------CTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred cccccchhHHHHHHHhhc-ccccC-----------------CccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 76432211 11221111 11111 112234678999999999999999 6777764
No 247
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=99.90 E-value=2.4e-24 Score=227.11 Aligned_cols=186 Identities=18% Similarity=0.209 Sum_probs=141.0
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|..++..++|+|++++++++......++||||+++|+|.+++.+.+..+++..+..++.+++.||+|||. .
T Consensus 106 ~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~----~ 181 (412)
T 2vd5_A 106 SCFREERDVLVNGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHR----L 181 (412)
T ss_dssp CCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 456678889999999999999999999999999999999999999998655578999999999999999999995 4
Q ss_pred CeeecCCCCcc--------------------------cccccccccccCcccccc-------CCCcCccccchhhHHHHH
Q 040540 527 PIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGS-------EGIVSAKCDVYSYGVLLM 573 (669)
Q Consensus 527 ~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~-------~~~~~~~~Dv~s~Gvil~ 573 (669)
+|+|||+|+.. .....+||+.|+|||++. ...|+.++|||||||++|
T Consensus 182 giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvily 261 (412)
T 2vd5_A 182 GYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAY 261 (412)
T ss_dssp TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHH
T ss_pred CeeecccCHHHeeecCCCCEEEeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHH
Confidence 79999999530 011236999999999986 356899999999999999
Q ss_pred HHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCC---CCHHHH
Q 040540 574 ETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR---MHMTDA 650 (669)
Q Consensus 574 el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~R---ps~~~v 650 (669)
||++|+.||....... .+...+........ +. .+...+..+.+++.+|+. +|.+| |+++|+
T Consensus 262 elltG~~Pf~~~~~~~-~~~~i~~~~~~~~~-----p~---------~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei 325 (412)
T 2vd5_A 262 EMFYGQTPFYADSTAE-TYGKIVHYKEHLSL-----PL---------VDEGVPEEARDFIQRLLC-PPETRLGRGGAGDF 325 (412)
T ss_dssp HHHHSSCTTCCSSHHH-HHHHHHTHHHHCCC-----C-------------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHH
T ss_pred HHHhCCCCCCCCCHHH-HHHHHHhcccCcCC-----Cc---------cccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHH
Confidence 9999999997532111 01111110000000 00 012234567899999999 99998 588887
Q ss_pred HH
Q 040540 651 AA 652 (669)
Q Consensus 651 ~~ 652 (669)
++
T Consensus 326 ~~ 327 (412)
T 2vd5_A 326 RT 327 (412)
T ss_dssp HT
T ss_pred hc
Confidence 54
No 248
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=99.90 E-value=3.2e-24 Score=221.92 Aligned_cols=175 Identities=19% Similarity=0.151 Sum_probs=137.1
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..+ +||+++++++++...+..++||||+++|+|.+++... ..+++.....++.+++.||+|||. .
T Consensus 66 ~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~----~ 140 (353)
T 2i0e_A 66 CTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV-GRFKEPHAVFYAAEIAIGLFFLQS----K 140 (353)
T ss_dssp HHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 345677778776 7999999999999989999999999999999999853 358999999999999999999995 4
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+|+|||+|+.. .....+||+.|+|||++.+..++.++||||+||++|||++|+.|
T Consensus 141 givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~P 220 (353)
T 2i0e_A 141 GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAP 220 (353)
T ss_dssp TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCS
T ss_pred CEEeccCCHHHEEEcCCCcEEEEeCCcccccccCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCC
Confidence 79999999530 11234599999999999988899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|.... ...+.+.+...... . +...+..+.+++.+|+..||.+||++
T Consensus 221 f~~~~--~~~~~~~i~~~~~~-~-----------------p~~~s~~~~~li~~lL~~dP~~R~~~ 266 (353)
T 2i0e_A 221 FEGED--EDELFQSIMEHNVA-Y-----------------PKSMSKEAVAICKGLMTKHPGKRLGC 266 (353)
T ss_dssp SCCSS--HHHHHHHHHHCCCC-C-----------------CTTSCHHHHHHHHHHTCSCTTSCTTC
T ss_pred CCCCC--HHHHHHHHHhCCCC-C-----------------CCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence 97532 11122211111000 0 11223467899999999999999964
No 249
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=99.90 E-value=8.9e-25 Score=228.83 Aligned_cols=173 Identities=9% Similarity=0.042 Sum_probs=121.2
Q ss_pred ccceeeccCCCCChHHhhhcCCCccCHHHH------HHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc------------
Q 040540 476 FKALVLEFMPNGSLEKWLYSHNYFLDILER------LNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV------------ 537 (669)
Q Consensus 476 ~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~------~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~------------ 537 (669)
..++|||||+ |+|.+++...+....+..+ ..++.++++||+|||. .+|+|||+|+..
T Consensus 162 ~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~----~~ivHrDikp~NIll~~~~~~kL~ 236 (371)
T 3q60_A 162 NYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQS----KGLVHGHFTPDNLFIMPDGRLMLG 236 (371)
T ss_dssp EEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHH----TTEEETTCSGGGEEECTTSCEEEC
T ss_pred eEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHH----CCCccCcCCHHHEEECCCCCEEEE
Confidence 3689999999 8999999864444565566 7788999999999995 479999999541
Q ss_pred ---------ccc-ccccccccCccccccC--CCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCcc
Q 040540 538 ---------TQT-TTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLS 605 (669)
Q Consensus 538 ---------~~~-~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~ 605 (669)
... ...||+.|+|||++.+ ..++.++|||||||++|||+||+.||......... ...
T Consensus 237 DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~-----------~~~ 305 (371)
T 3q60_A 237 DVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKG-----------SWK 305 (371)
T ss_dssp CGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTT-----------CCC
T ss_pred ecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCccccc-----------chh
Confidence 011 3357899999999987 67999999999999999999999999764322110 000
Q ss_pred ccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH--HHHHhHHHhhhh
Q 040540 606 EVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA--KLKKIKVKFLDD 664 (669)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~--~l~~~~~~~~~~ 664 (669)
.............++.....+..+.+++.+||+.||++|||+.|+++ .++++.......
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~~~~ 366 (371)
T 3q60_A 306 RPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQNEISSS 366 (371)
T ss_dssp BCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHHHHHHhhh
Confidence 00000000001111112234567889999999999999999999975 455555444333
No 250
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=99.90 E-value=3.2e-24 Score=218.27 Aligned_cols=184 Identities=22% Similarity=0.265 Sum_probs=144.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|||++++++++......++||||+++|+|.+++... ..+++.....++.++++|++|||.. +
T Consensus 52 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~----~ 126 (304)
T 2jam_A 52 SLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILER-GVYTEKDASLVIQQVLSAVKYLHEN----G 126 (304)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcCCCccHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 4567899999999999999999999888899999999999999999753 4588999999999999999999954 7
Q ss_pred eeecCCCCccc--------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSVT--------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
++|+|+++... .....||+.|+|||++.+..++.++||||+||++|||++|+.|
T Consensus 127 i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p 206 (304)
T 2jam_A 127 IVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPP 206 (304)
T ss_dssp CCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred ccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCC
Confidence 99999885311 0112378999999999988899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|.... ...+...+...... .. . +.+...+..+.+++.+|+..||++|||+.|+++
T Consensus 207 f~~~~--~~~~~~~i~~~~~~-~~----~---------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 207 FYEET--ESKLFEKIKEGYYE-FE----S---------PFWDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp TTTSC--HHHHHHHHHHCCCC-CC----T---------TTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred CCCCC--HHHHHHHHHcCCCC-CC----c---------cccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 86532 11222222221110 00 0 011223456789999999999999999999986
No 251
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=99.90 E-value=2.6e-24 Score=221.37 Aligned_cols=199 Identities=16% Similarity=0.131 Sum_probs=140.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|||++++++++......++||||++ |+|.+++... ..+++..+..|+.++++||+|||..
T Consensus 78 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~-~~~~~~~~~~i~~ql~~~l~~LH~~---- 151 (329)
T 3gbz_A 78 GTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAE-NDLKKYMDKN-PDVSMRVIKSFLYQLINGVNFCHSR---- 151 (329)
T ss_dssp --CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred hhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEEEecCC-CCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 356689999999999999999999999999999999998 5999999754 3589999999999999999999954
Q ss_pred CeeecCCCCccc------------------------------ccccccccccCccccccCC-CcCccccchhhHHHHHHH
Q 040540 527 PIIHCEGEDSVT------------------------------QTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 527 ~i~h~d~~~~~~------------------------------~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el 575 (669)
+|+|+|+|+... .....||+.|+|||++.+. .++.++||||+||++|||
T Consensus 152 ~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el 231 (329)
T 3gbz_A 152 RCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEM 231 (329)
T ss_dssp TCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHH
T ss_pred CEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHH
Confidence 799999995410 1122468999999998774 489999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHh-CCCC--ccccc--------cccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCC
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKES-LPHR--LSEVV--------DTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~-~~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~R 644 (669)
++|+.||..... ...+...+... .+.. +.... .+..................+.+++.+|++.||++|
T Consensus 232 l~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R 310 (329)
T 3gbz_A 232 LMKTPLFPGDSE-IDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKR 310 (329)
T ss_dssp HHSSCSSCCSSH-HHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGS
T ss_pred HHCCCCcCCCCH-HHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhC
Confidence 999999965321 11122222211 1110 00000 000000000000111234567899999999999999
Q ss_pred CCHHHHHH
Q 040540 645 MHMTDAAA 652 (669)
Q Consensus 645 ps~~~v~~ 652 (669)
||+.|+++
T Consensus 311 ~t~~e~l~ 318 (329)
T 3gbz_A 311 ISAKNALE 318 (329)
T ss_dssp CCHHHHHT
T ss_pred CCHHHHhC
Confidence 99999975
No 252
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=99.90 E-value=2.5e-24 Score=224.67 Aligned_cols=132 Identities=23% Similarity=0.276 Sum_probs=112.5
Q ss_pred cCchhhhhhcccc-----ccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVR-----HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~-----h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|..++..++ |+|++++++++......++||||+ +++|.+++.... ..+++.....++.|+++||+|||.
T Consensus 77 ~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~ 155 (360)
T 3llt_A 77 SAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRK 155 (360)
T ss_dssp HHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcccCCCCCCeecccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445777777775 999999999999888999999999 899999998643 358899999999999999999995
Q ss_pred CCCCCCeeecCCCCccc-----------------------------------------------ccccccccccCccccc
Q 040540 522 GHSSAPIIHCEGEDSVT-----------------------------------------------QTTTMATIGYMAPEYG 554 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~~-----------------------------------------------~~~~~gt~~y~aPE~~ 554 (669)
.+|+|||+|+... .....||+.|+|||++
T Consensus 156 ----~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~ 231 (360)
T 3llt_A 156 ----MSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVI 231 (360)
T ss_dssp ----TTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHH
T ss_pred ----CCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHH
Confidence 4799999985411 1122478999999999
Q ss_pred cCCCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 555 SEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 555 ~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
.+..++.++|||||||++|||+||+.||..
T Consensus 232 ~~~~~~~~~DiwslG~il~ell~g~~pf~~ 261 (360)
T 3llt_A 232 LNLGWDVSSDMWSFGCVLAELYTGSLLFRT 261 (360)
T ss_dssp TTCCCCTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred cCCCCCCccchHHHHHHHHHHHHCCCCCCC
Confidence 998999999999999999999999999975
No 253
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=99.90 E-value=1.5e-24 Score=226.24 Aligned_cols=134 Identities=22% Similarity=0.256 Sum_probs=115.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|+|++++++++......++||||+++|+|.+++... ..+++.....++.++++|++|||+. .
T Consensus 76 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~~i~~~l~~lh~~---~ 151 (360)
T 3eqc_A 76 NQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-GRIPEQILGKVSIAVIKGLTYLREK---H 151 (360)
T ss_dssp HHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEECCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHh---C
Confidence 45678999999999999999999999888899999999999999999754 3588999999999999999999952 2
Q ss_pred CeeecCCCCcc-----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 527 PIIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 527 ~i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
+++|+|+|+.. ......||+.|+|||++.+..++.++|||||||++|||+||+.||.
T Consensus 152 ~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~ 231 (360)
T 3eqc_A 152 KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIP 231 (360)
T ss_dssp CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSS
T ss_pred CEEcCCccHHHEEECCCCCEEEEECCCCcccccccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence 69999999541 1122358999999999998889999999999999999999999996
Q ss_pred c
Q 040540 584 E 584 (669)
Q Consensus 584 ~ 584 (669)
.
T Consensus 232 ~ 232 (360)
T 3eqc_A 232 P 232 (360)
T ss_dssp C
T ss_pred C
Confidence 5
No 254
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=99.90 E-value=2.1e-24 Score=216.17 Aligned_cols=179 Identities=21% Similarity=0.258 Sum_probs=134.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..++.++|||++++++++...+..++||||+ ++++.+++... ..+++.++..++.++++|+.|||.. +
T Consensus 59 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~----~ 132 (275)
T 2eue_A 59 RIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYA-GNELFDYIVQR-DKMSEQEARRFFQQIISAVEYCHRH----K 132 (275)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEEECC-CEEHHHHHHTS-SSCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEehhc-CCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 4567899999999999999999999888999999999 67888888754 4589999999999999999999954 7
Q ss_pred eeecCCCCcc------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+++.. ......||+.|+|||++.+..+ +.++||||+||++|||++|+.||
T Consensus 133 i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf 212 (275)
T 2eue_A 133 IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPF 212 (275)
T ss_dssp CCCCCCSGGGEEECTTSCEEECCSSCC---------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSS
T ss_pred CeeccCChHhEEECCCCCEEEeecccceeccCcccccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCC
Confidence 9999999541 0122348999999999887664 78999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.... ...+...+...... . +......+.+++.+|++.||.+|||+.|+++
T Consensus 213 ~~~~--~~~~~~~~~~~~~~-~-----------------~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 213 DDES--IPVLFKNISNGVYT-L-----------------PKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp CCSS--HHHHHHHHHHTCCC-C-----------------CTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CCCC--HHHHHHHHHhCCCC-C-----------------CccCCHHHHHHHHHHhhcCHhHCCCHHHHhh
Confidence 7532 11111111111110 0 1122345789999999999999999999975
No 255
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=99.90 E-value=3.9e-24 Score=215.28 Aligned_cols=180 Identities=22% Similarity=0.274 Sum_probs=142.8
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|+|++++++++......++||||+++|+|.+++... ..+++.....++.++++|+.|||. .+
T Consensus 60 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~----~~ 134 (284)
T 2vgo_A 60 QLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKH-GRFDEQRSATFMEELADALHYCHE----RK 134 (284)
T ss_dssp HHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHT----TT
T ss_pred HHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEEEeCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH----CC
Confidence 4667899999999999999999999888899999999999999999754 358899999999999999999994 48
Q ss_pred eeecCCCCcc-----------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCc
Q 040540 528 IIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDE 584 (669)
Q Consensus 528 i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~ 584 (669)
++|+|+++.. ......||+.|+|||++.+..++.++||||||+++|||++|+.||..
T Consensus 135 i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~ 214 (284)
T 2vgo_A 135 VIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDS 214 (284)
T ss_dssp EECCCCSGGGEEECTTCCEEECCCTTCEECSSSCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCC
T ss_pred ceecCCCHHHEEEcCCCCEEEecccccccCcccccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCC
Confidence 9999998531 11223589999999999988899999999999999999999999975
Q ss_pred CCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 585 MFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
... ......+... . ... +......+.+++.+|++.||.+||++.|+++
T Consensus 215 ~~~--~~~~~~~~~~---~------~~~---------~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 215 PSH--TETHRRIVNV---D------LKF---------PPFLSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp SSH--HHHHHHHHTT---C------CCC---------CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCH--hHHHHHHhcc---c------cCC---------CCcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 321 1111111110 0 000 1122345789999999999999999999976
No 256
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.90 E-value=4.7e-24 Score=217.43 Aligned_cols=198 Identities=21% Similarity=0.226 Sum_probs=138.8
Q ss_pred Cchhhhhhcccc---ccccceecccccccc-----ccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhh
Q 040540 449 FDSECEVLRNVR---HRNLIKIISSCSNPD-----FKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 449 ~~~e~~~l~~l~---h~niv~l~~~~~~~~-----~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~l 519 (669)
+..|+..+..++ |||+++++++|.... ..++||||+. |+|.+++.... ..+++..+..|+.++++||+||
T Consensus 58 ~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~l 136 (308)
T 3g33_A 58 TVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFL 136 (308)
T ss_dssp HHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 445666666654 999999999986644 4689999997 69999998643 2489999999999999999999
Q ss_pred hcCCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 520 RHGHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
|.. +++|+|+|+.. ......||+.|+|||++.+..++.++||||+||++|||
T Consensus 137 H~~----~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l 212 (308)
T 3g33_A 137 HAN----CIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEM 212 (308)
T ss_dssp HHT----TCCCSCCCTTTEEECTTSCEEECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHT
T ss_pred HHC----CcccCCCCHHHEEEcCCCCEEEeeCccccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHH
Confidence 954 79999999541 11223589999999999888899999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHh-CCC--Ccccccc---ccccc--hhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKES-LPH--RLSEVVD---TNLVR--EEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~-~~~--~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
++|+.||..... ...+....... .+. .+..... ..... .........+....+.+++.+|++.||++|||+
T Consensus 213 ~~g~~pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~ 291 (308)
T 3g33_A 213 FRRKPLFCGNSE-ADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISA 291 (308)
T ss_dssp TTSSCSCCCSSH-HHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCH
T ss_pred HhCCCCCCCCCH-HHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCH
Confidence 999999975321 11122222211 111 0100000 00000 000000112344567899999999999999999
Q ss_pred HHHHH
Q 040540 648 TDAAA 652 (669)
Q Consensus 648 ~~v~~ 652 (669)
.|+++
T Consensus 292 ~e~l~ 296 (308)
T 3g33_A 292 FRALQ 296 (308)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 99975
No 257
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=99.90 E-value=2.3e-24 Score=216.40 Aligned_cols=189 Identities=19% Similarity=0.218 Sum_probs=141.7
Q ss_pred ccCchhhhhhccccccccceeccccc--cccccceeeccCCCCChHHhhhcC---CCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCS--NPDFKALVLEFMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~lv~ey~~~g~L~~~l~~~---~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
+.+..|+..+..++|||++++++++. .....++||||+++|+|.+++... ...+++..+..++.++++|++|||.
T Consensus 50 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~ 129 (279)
T 2w5a_A 50 QMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR 129 (279)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 35677999999999999999999874 356779999999999999999752 3458999999999999999999996
Q ss_pred CC-CCCCeeecCCCCccc-------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHH
Q 040540 522 GH-SSAPIIHCEGEDSVT-------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 522 ~~-~~~~i~h~d~~~~~~-------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el 575 (669)
.+ ...+++|+|+++... .....||+.|+|||...+..++.++||||||+++|||
T Consensus 130 ~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l 209 (279)
T 2w5a_A 130 RSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYEL 209 (279)
T ss_dssp HC------CCCCCSGGGEEECSSSCEEECCCCHHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHH
T ss_pred ccCCCCeeEEeccchhhEEEcCCCCEEEecCchheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHH
Confidence 42 113499999985410 0112478999999999888899999999999999999
Q ss_pred HhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHH
Q 040540 576 FTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKL 654 (669)
Q Consensus 576 ~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l 654 (669)
+||+.||.... ...+...+........ +......+.+++.+||+.||.+||++.|+++.+
T Consensus 210 ~~g~~p~~~~~--~~~~~~~i~~~~~~~~-----------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~ 269 (279)
T 2w5a_A 210 CALMPPFTAFS--QKELAGKIREGKFRRI-----------------PYRYSDELNEIITRMLNLKDYHRPSVEEILENP 269 (279)
T ss_dssp HHSSCSSCCSS--HHHHHHHHHHTCCCCC-----------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred HHCCCCCcccC--HHHHHHHHhhcccccC-----------------CcccCHHHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence 99999987532 1222222222211110 112234578999999999999999999998754
No 258
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=99.90 E-value=5.1e-24 Score=216.66 Aligned_cols=181 Identities=20% Similarity=0.253 Sum_probs=144.1
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..+..++|+|++++++++......++||||+++++|.+++.. ..+++.....++.++++|+.|||..
T Consensus 65 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---- 138 (303)
T 3a7i_A 65 EDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEP--GPLDETQIATILREILKGLDYLHSE---- 138 (303)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEeCCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 4567789999999999999999999888889999999999999999964 4589999999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......||+.|+|||+..+..++.++||||||+++|||++|+.|
T Consensus 139 ~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p 218 (303)
T 3a7i_A 139 KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPP 218 (303)
T ss_dssp TEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCccCCCChheEEECCCCCEEEeecccceecCccccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCC
Confidence 79999998431 11223589999999999988899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|.... .......+....+... +......+.+++.+||+.||++|||+.|+++
T Consensus 219 ~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 270 (303)
T 3a7i_A 219 HSELH--PMKVLFLIPKNNPPTL-----------------EGNYSKPLKEFVEACLNKEPSFRPTAKELLK 270 (303)
T ss_dssp TTTSC--HHHHHHHHHHSCCCCC-----------------CSSCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred CCCcC--HHHHHHHhhcCCCCCC-----------------ccccCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence 86532 1112222222111111 0112345789999999999999999999987
No 259
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=99.89 E-value=2.7e-24 Score=223.30 Aligned_cols=200 Identities=18% Similarity=0.220 Sum_probs=146.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHh------hhcC-CCccCHHHHHHHHHhHHhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKW------LYSH-NYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~------l~~~-~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
+.+..|+.++..++|||++++++++...+..++||||+++|+|.++ +... ...+++..+..++.++++|+.||
T Consensus 88 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~l 167 (348)
T 2pml_X 88 DDFKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYI 167 (348)
T ss_dssp HHHHHHHHHHTTCCCTTBCCCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999999999 6542 45789999999999999999999
Q ss_pred hcCCCCCCeeecCCCCcc-----------------------cccccccccccCccccccCC-CcCc-cccchhhHHHHHH
Q 040540 520 RHGHSSAPIIHCEGEDSV-----------------------TQTTTMATIGYMAPEYGSEG-IVSA-KCDVYSYGVLLME 574 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~-----------------------~~~~~~gt~~y~aPE~~~~~-~~~~-~~Dv~s~Gvil~e 574 (669)
|. ..+++|+|+++.. ......||..|+|||+..+. .++. ++|||||||++||
T Consensus 168 H~---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~ 244 (348)
T 2pml_X 168 HN---EKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYV 244 (348)
T ss_dssp HH---TSCEECCCCCGGGEEECTTSCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHH
T ss_pred hc---cCCEeecCCChHhEEEcCCCcEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHH
Confidence 95 1489999998531 11223589999999999876 5666 9999999999999
Q ss_pred HHhCCCCCCcCCCCCccHHHHHHHhCCC---CccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHH
Q 040540 575 TFTRKRPTDEMFTGEMSLRRWVKESLPH---RLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAA 651 (669)
Q Consensus 575 l~tg~~p~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~ 651 (669)
|++|+.||...... ..+...+...... .......+..... ...........+.+++.+||+.||++|||+.|++
T Consensus 245 l~~g~~pf~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l 321 (348)
T 2pml_X 245 MFYNVVPFSLKISL-VELFNNIRTKNIEYPLDRNHFLYPLTNKK--STCSNNFLSNEDIDFLKLFLRKNPAERITSEDAL 321 (348)
T ss_dssp HHHSSCSSCCSSCS-HHHHHHHTSCCCCCCCSSSSSTTTTCC----------CCCHHHHHHHHHHCCSSGGGSCCHHHHH
T ss_pred HHhCCCCCCCCCcH-HHHHHHHhccCcCCccchhhhhccccccc--cccchhhcCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 99999999763321 2222222211110 0000000000000 0000123445788999999999999999999998
Q ss_pred H
Q 040540 652 A 652 (669)
Q Consensus 652 ~ 652 (669)
+
T Consensus 322 ~ 322 (348)
T 2pml_X 322 K 322 (348)
T ss_dssp T
T ss_pred c
Confidence 7
No 260
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=99.89 E-value=3.5e-24 Score=218.74 Aligned_cols=196 Identities=15% Similarity=0.123 Sum_probs=140.1
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|||++++++++......++||||+++++|.+++.. ...+++.....++.++++|++|||.. +
T Consensus 48 ~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~i~~~l~~~l~~lH~~----~ 122 (311)
T 4agu_A 48 IALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRY-QRGVPEHLVKSITWQTLQAVNFCHKH----N 122 (311)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHhCCCCCccchhheeecCCeEEEEEEeCCCchHHHHHhh-hcCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 456789999999999999999999988889999999999999998874 35589999999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
++|+|+++.. ......||+.|+|||++.+ ..++.++||||+||++|||+||+.|
T Consensus 123 ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p 202 (311)
T 4agu_A 123 CIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPL 202 (311)
T ss_dssp EECCCCSGGGEEECTTSCEEECCCTTCEECC------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCC
Confidence 9999999531 0122358899999999876 5689999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCC-------------cc--ccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 582 TDEMFTGEMSLRRWVKESLPHR-------------LS--EVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
|..... ......+....... .. ..-++.-.. .........+..+.+++.+||+.||++|||
T Consensus 203 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt 278 (311)
T 4agu_A 203 WPGKSD--VDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDME--PLELKFPNISYPALGLLKGCLHMDPTERLT 278 (311)
T ss_dssp CCCSSH--HHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCC--CHHHHCTTCCHHHHHHHHHHCCSSTTTSCC
T ss_pred CCCCCH--HHHHHHHHHHhcccccccccccccccccccCcCCCccccc--hhhhhcccccHHHHHHHHHHccCChhhcCC
Confidence 975321 11111111111000 00 000000000 000001234456789999999999999999
Q ss_pred HHHHHH
Q 040540 647 MTDAAA 652 (669)
Q Consensus 647 ~~~v~~ 652 (669)
++|+++
T Consensus 279 ~~ell~ 284 (311)
T 4agu_A 279 CEQLLH 284 (311)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999985
No 261
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=99.89 E-value=3.5e-24 Score=216.88 Aligned_cols=185 Identities=22% Similarity=0.298 Sum_probs=140.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC--CccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN--YFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~--~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
+.+..|+..+..++|||++++++++......++||||+++++|.+++.... ...++.....++.++++|++|||..
T Consensus 64 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-- 141 (295)
T 2clq_A 64 QPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN-- 141 (295)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC--
Confidence 346678999999999999999999988888999999999999999998643 3456888889999999999999954
Q ss_pred CCCeeecCCCCcc--------------------------cccccccccccCccccccCCC--cCccccchhhHHHHHHHH
Q 040540 525 SAPIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSEGI--VSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 525 ~~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+++.. ......||+.|+|||+..+.. ++.++||||||+++|||+
T Consensus 142 --~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~ 219 (295)
T 2clq_A 142 --QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMA 219 (295)
T ss_dssp --TEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHH
T ss_pred --CEEccCCChhhEEEECCCCCEEEeecccccccCCCCCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 79999998431 011235889999999986643 789999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||+.||.........+......... +.+ +......+.+++.+||+.||++||++.|+++
T Consensus 220 ~g~~pf~~~~~~~~~~~~~~~~~~~--------~~~---------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 220 TGKPPFYELGEPQAAMFKVGMFKVH--------PEI---------PESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp HTSCTTGGGSSHHHHHHHHHHHCCC--------CCC---------CTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred HCCCCccCCCchhHHHHhhcccccc--------ccc---------cccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 9999996532211111111111100 111 1122345789999999999999999999975
No 262
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=99.89 E-value=6.8e-24 Score=221.27 Aligned_cols=184 Identities=23% Similarity=0.283 Sum_probs=142.1
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..+ +|||++++++++......++||||+++|+|.+++... ..+++..+..++.++++||.|||..
T Consensus 145 ~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~l~~~~~~~i~~qi~~~L~~LH~~---- 219 (365)
T 2y7j_A 145 ATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEK-VALSEKETRSIMRSLLEAVSFLHAN---- 219 (365)
T ss_dssp HHHHHHHHHHHHTTCTTBCCEEEEEEBSSEEEEEECCCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhcCCCCEeEEEEEEeeCCEEEEEEEeCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhC----
Confidence 456788889888 7999999999998888999999999999999999753 4589999999999999999999954
Q ss_pred CeeecCCCCcc------------------------cccccccccccCccccccC------CCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSE------GIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+++.. ......||+.|+|||++.+ ..++.++|||||||++|||+
T Consensus 220 gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell 299 (365)
T 2y7j_A 220 NIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLL 299 (365)
T ss_dssp TEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHH
T ss_pred CeecCCCCHHHEEECCCCCEEEEecCcccccCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHH
Confidence 79999998531 1122358999999998753 35889999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||+.||.... ...+...+....... ..+.+...+..+.+++.+|++.||++|||+.|+++
T Consensus 300 ~g~~pf~~~~--~~~~~~~i~~~~~~~--------------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 300 AGSPPFWHRR--QILMLRMIMEGQYQF--------------SSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp HSSCSSCCSS--HHHHHHHHHHTCCCC--------------CHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HCCCCCCCCC--HHHHHHHHHhCCCCC--------------CCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 9999996521 111222221111000 00112233456789999999999999999999975
No 263
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=1.8e-25 Score=249.68 Aligned_cols=377 Identities=15% Similarity=0.098 Sum_probs=207.7
Q ss_pred CCEEEEEcCCCCCcccccccccCC--CCCCEEeCCCCc-Ccc-cCCcccCCCCCCCEEEccCCcCCcc----CCccccCC
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNL--SFLVSLDISENN-FHG-HLPKELGQLRRLRVMSLAYNKLSGS----FPSWIGVL 122 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l--~~L~~L~Ls~N~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l 122 (669)
..++.|+|+++.+++..+..+..+ .+|++|+|++|. +.. .++.....+++|++|+|++|.+.+. ++..+.++
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 346667777666665544444442 337777777665 111 1122233566777777777766544 23334556
Q ss_pred cccccccccccCcc----ccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCc---ccCCccccCCC
Q 040540 123 SKLRILRLDYNNFT----GPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQ---GQIPTEIGSLQ 195 (669)
Q Consensus 123 ~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~---~~~p~~~~~l~ 195 (669)
++|++|+|++|.++ +.++..+.++++|+.|++++|.+.+ +|..+.++++|++|+++..... +..+..+..++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 67777777777765 2334445566777777777766654 5566666777777777643322 23334556666
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeC
Q 040540 196 NLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDL 275 (669)
Q Consensus 196 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 275 (669)
+|+.|+++++. .+.+|..+..+++|++|++++|.+++.....+...+++|++|+++++-..+.++..+..+++|+.|++
T Consensus 271 ~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 77777776643 23455666666777777777776654433333345677777777633222223333345666777777
Q ss_pred C-----------CCCcccc-CccccCCCCCCCEEEccCCccccCCCCCcccccccccC-CCCCCCEEECc----CCCCcc
Q 040540 276 G-----------FNSFSGH-IPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLT-NCRNLSNLALA----SNPLGG 338 (669)
Q Consensus 276 s-----------~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~-~l~~L~~L~l~----~n~l~~ 338 (669)
+ .|.+++. ++..+..+++|+.|++..|++++.. +..+. .+++|+.|+++ .|.+++
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~--------~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES--------LESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH--------HHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH--------HHHHHhhCCCCcEEEEeecCCCccccC
Confidence 6 2444432 1222334666777777656554321 11222 25667777775 445544
Q ss_pred ccch-hHhhhhccccccceEeecCcc--cCCCCCcccc-ccCCCcEEecCCCccccc-CchhhcCCCCCCeeeCcCCccc
Q 040540 339 ILPQ-LIGNFSASLQNIYAFELGFND--LNGTIPTSIG-TLQQLQGFYVPENNLQGY-VPHDLCHLERLNILNLSGNKLS 413 (669)
Q Consensus 339 ~~~~-~~~~~~~~l~~l~~l~l~~n~--l~~~~~~~~~-~l~~L~~l~l~~n~~~~~-~p~~~~~l~~L~~L~ls~n~l~ 413 (669)
.... .+......+++|+.|+++++. +++.....+. .+++|+.|++++|.+++. ++..+..+++|+.|++++|.++
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 2111 122222335666777765432 4333333332 256677777777766652 3344456677777777777765
Q ss_pred ee-CcccccCCCCCCEEECCCCcce
Q 040540 414 GH-IPPCLASLTSLRELHLGSNKLS 437 (669)
Q Consensus 414 ~~-~p~~l~~l~~L~~L~l~~N~l~ 437 (669)
+. ++.....+++|++|++++|+++
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHHHHHHhcCccCeeECcCCcCC
Confidence 43 2333345677777777777755
No 264
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=99.89 E-value=7.1e-24 Score=229.97 Aligned_cols=180 Identities=18% Similarity=0.183 Sum_probs=140.3
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcC---CCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~---~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+..|..++..++|||++++++++......++||||+++|+|.+++... ...+++.....++.+++.||+|||.
T Consensus 231 ~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~--- 307 (543)
T 3c4z_A 231 GAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQ--- 307 (543)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHH---
Confidence 4567899999999999999999999888899999999999999999753 3468999999999999999999995
Q ss_pred CCCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 525 SAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 525 ~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.+|+|||+|+.. .....+||+.|+|||++.+..|+.++||||+||++|||+||+
T Consensus 308 -~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~ 386 (543)
T 3c4z_A 308 -RNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAAR 386 (543)
T ss_dssp -TTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSS
T ss_pred -cCCcccCCChHHEEEeCCCCEEEeecceeeeccCCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCC
Confidence 479999999530 012236999999999999988999999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
.||....... .............. ..+...+..+.+++.+|++.||.+||++
T Consensus 387 ~PF~~~~~~~-~~~~~~~~i~~~~~---------------~~p~~~s~~~~~li~~lL~~dP~~R~~~ 438 (543)
T 3c4z_A 387 GPFRARGEKV-ENKELKQRVLEQAV---------------TYPDKFSPASKDFCEALLQKDPEKRLGF 438 (543)
T ss_dssp CSSCCTTCCC-CHHHHHHHHHHCCC---------------CCCTTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred CCCCCCccch-hHHHHHHHHhhccc---------------CCCcccCHHHHHHHHHhccCCHhHCCCC
Confidence 9997642211 11111111110000 0011234567899999999999999976
No 265
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=99.89 E-value=6.3e-24 Score=217.90 Aligned_cols=185 Identities=23% Similarity=0.258 Sum_probs=141.6
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+.++..++|||++++++++.... .++||||+++|+|.+++.. ...+++.....++.++++||+|||. .
T Consensus 60 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~----~ 133 (322)
T 2ycf_A 60 LNVETEIEILKKLNHPCIIKIKNFFDAED-YYIVLELMEGGELFDKVVG-NKRLKEATCKLYFYQMLLAVQYLHE----N 133 (322)
T ss_dssp -CHHHHHHHHHHCCCTTBCCEEEEEESSS-EEEEEECCTTEETHHHHST-TCCCCHHHHHHHHHHHHHHHHHHHH----T
T ss_pred hhHHHHHHHHHhCCCCCCceEeeEEcCCc-eEEEEecCCCCcHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHH----C
Confidence 35678999999999999999999886554 7899999999999999975 3568999999999999999999995 4
Q ss_pred CeeecCCCCccc---------------------------ccccccccccCcccccc---CCCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGS---EGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+++... .....||+.|+|||++. ...++.++|||||||++|||+
T Consensus 134 ~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~ 213 (322)
T 2ycf_A 134 GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICL 213 (322)
T ss_dssp TEECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHH
T ss_pred CeeccCCCHHHEEEecCCCCCeEEEccCccceecccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHH
Confidence 799999985310 01124789999999863 456889999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||..... ...+...+........ + ..+......+.+++.+||..||++||++.|+++
T Consensus 214 ~g~~pf~~~~~-~~~~~~~~~~~~~~~~-----~---------~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 214 SGYPPFSEHRT-QVSLKDQITSGKYNFI-----P---------EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp HSSCSSCSTTC-SSCHHHHHHHTCCCCC-----H---------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred hCCCCCcccch-HHHHHHHHHhCccccC-----c---------hhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 99999976332 2233333332211100 0 011233456789999999999999999999985
No 266
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=99.89 E-value=6.1e-24 Score=228.32 Aligned_cols=194 Identities=13% Similarity=0.107 Sum_probs=146.1
Q ss_pred cCchhhhhhccccccccc-eeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLI-KIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv-~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|..++..++|.+.+ .+..++......++||||+ +++|.+++......+++..+..|+.|++.||+|||..
T Consensus 48 ~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---- 122 (483)
T 3sv0_A 48 QLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSK---- 122 (483)
T ss_dssp CHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 466788899989875544 4444555667779999999 8999999986566799999999999999999999954
Q ss_pred CeeecCCCCccc-----------------------------------ccccccccccCccccccCCCcCccccchhhHHH
Q 040540 527 PIIHCEGEDSVT-----------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 527 ~i~h~d~~~~~~-----------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
+|+|||+|+... .....||+.|+|||++.+..++.++|||||||+
T Consensus 123 gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvi 202 (483)
T 3sv0_A 123 SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYV 202 (483)
T ss_dssp TEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHH
T ss_pred CEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHH
Confidence 799999984310 013358999999999999899999999999999
Q ss_pred HHHHHhCCCCCCcCCCCCc-cHHHH-HHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 572 LMETFTRKRPTDEMFTGEM-SLRRW-VKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 572 l~el~tg~~p~~~~~~~~~-~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
+|||++|+.||........ ..... ...... ..+. ......+..+.+++.+||+.+|++||++.+
T Consensus 203 l~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~--------~~~~------~l~~~~p~~l~~li~~cl~~dP~~RPs~~e 268 (483)
T 3sv0_A 203 LMYFLRGSLPWQGLKAGTKKQKYEKISEKKVA--------TSIE------ALCRGYPTEFASYFHYCRSLRFDDKPDYSY 268 (483)
T ss_dssp HHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHH--------SCHH------HHHTTSCHHHHHHHHHHHTCCTTCCCCHHH
T ss_pred HHHHHhCCCCCccccchhHHHHHHHHhhcccc--------ccHH------HHhcCCcHHHHHHHHHHhcCChhhCcCHHH
Confidence 9999999999976432221 11111 111100 0000 001223457889999999999999999999
Q ss_pred HHHHHHHhHHH
Q 040540 650 AAAKLKKIKVK 660 (669)
Q Consensus 650 v~~~l~~~~~~ 660 (669)
|++.|+++...
T Consensus 269 l~~~L~~l~~~ 279 (483)
T 3sv0_A 269 LKRLFRDLFIR 279 (483)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 267
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=99.89 E-value=8.2e-24 Score=218.02 Aligned_cols=181 Identities=19% Similarity=0.242 Sum_probs=136.4
Q ss_pred ccCchhhhhhccccccccceecccccccc---------------------------------------------------
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD--------------------------------------------------- 475 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~--------------------------------------------------- 475 (669)
+.+..|+.++..++|||++++++++....
T Consensus 49 ~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (332)
T 3qd2_B 49 EKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQ 128 (332)
T ss_dssp HHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHHHC-----------------------------------------
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhhhhhhhccccccccccCCCcccccccceeeccccCccccccccc
Confidence 45678999999999999999999874432
Q ss_pred ------ccceeeccCCCCChHHhhhcCC--CccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc----------
Q 040540 476 ------FKALVLEFMPNGSLEKWLYSHN--YFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV---------- 537 (669)
Q Consensus 476 ------~~~lv~ey~~~g~L~~~l~~~~--~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~---------- 537 (669)
..++||||+++|+|.+++.... ...++.....++.|+++||+|||. .+++|||+|+..
T Consensus 129 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~----~~ivH~Dlkp~NIll~~~~~~k 204 (332)
T 3qd2_B 129 PSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHS----KGLMHRDLKPSNIFFTMDDVVK 204 (332)
T ss_dssp ---CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHH----TTEECCCCCGGGEEECTTCCEE
T ss_pred CCCCCceEEEEEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHHh----CCeeecCCCcccEEEeCCCCEE
Confidence 2689999999999999998643 235666788999999999999995 479999999531
Q ss_pred ---------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCc
Q 040540 538 ---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEM 590 (669)
Q Consensus 538 ---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~ 590 (669)
......||+.|+|||++.+..++.++|||||||++|||++|..|+... .
T Consensus 205 L~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~----~ 280 (332)
T 3qd2_B 205 VGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER----V 280 (332)
T ss_dssp ECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH----H
T ss_pred EeecCcccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH----H
Confidence 001235899999999999888999999999999999999997764220 0
Q ss_pred cHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 591 SLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 591 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
......... ... .........+.+++.+||+.||++|||+.|+++
T Consensus 281 ~~~~~~~~~-----------~~~------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 281 RIITDVRNL-----------KFP------LLFTQKYPQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp HHHHHHHTT-----------CCC------HHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred HHHHHhhcc-----------CCC------cccccCChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 011111100 000 112344556789999999999999999999975
No 268
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=99.89 E-value=2.8e-24 Score=217.58 Aligned_cols=181 Identities=18% Similarity=0.196 Sum_probs=142.4
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+..++.++|+|++++++++...+..++||||+++++|.+++... ..+++.++..++.++++|++|||..
T Consensus 60 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---- 134 (294)
T 2rku_A 60 EKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRR-KALTEPEARYYLRQIVLGCQYLHRN---- 134 (294)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 34667899999999999999999999888899999999999999998753 4589999999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......||+.|+|||...+..++.++||||||+++|||+||+.|
T Consensus 135 ~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p 214 (294)
T 2rku_A 135 RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPP 214 (294)
T ss_dssp TEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CccccCCChHhEEEcCCCCEEEEeccCceecccCccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 79999998431 01123488999999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|...... .....+... .. .+ +......+.+++.+||+.||++|||+.|+++
T Consensus 215 ~~~~~~~--~~~~~~~~~---~~------~~---------~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 265 (294)
T 2rku_A 215 FETSCLK--ETYLRIKKN---EY------SI---------PKHINPVAASLIQKMLQTDPTARPTINELLN 265 (294)
T ss_dssp TCCSSHH--HHHHHHHTT---CC------CC---------CTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred CCCCCHH--HHHHHHhhc---cC------CC---------ccccCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 9753211 111111110 00 00 1112345788999999999999999999976
No 269
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=4e-22 Score=200.56 Aligned_cols=203 Identities=24% Similarity=0.228 Sum_probs=152.3
Q ss_pred ccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCC
Q 040540 94 ELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKL 173 (669)
Q Consensus 94 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L 173 (669)
.+.++++|+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..+.++++|++|++++|.+++..+. +.+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 4678889999999999988 5665553 6889999999999988888899999999999999988765443 778888
Q ss_pred CEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeeccc
Q 040540 174 VNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALST 253 (669)
Q Consensus 174 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~ 253 (669)
++|++++|.+. .+|..+..+++|++|++++|++++..|..|.++++|++|++++|.++ .+|...+..+++|++|++++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCC
Confidence 88888888887 66777888888888888888888777777777888888888888776 34544444567777777777
Q ss_pred CcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCcc
Q 040540 254 NNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNL 304 (669)
Q Consensus 254 n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l 304 (669)
|++++..+..+..+++|+.|++++|.+. .+|..+....+|+.+++.+|.+
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 7776555555666677777777777666 4455555555566666555544
No 270
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=99.89 E-value=4.3e-24 Score=221.35 Aligned_cols=199 Identities=20% Similarity=0.204 Sum_probs=144.0
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+.++..++|||++++++++......++||||+++ +|.+++......+++.....++.++++|++|||.. +
T Consensus 58 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~----~ 132 (346)
T 1ua2_A 58 TALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQH----W 132 (346)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHhhCCCCCCCeEEEEEeeCCceEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 456799999999999999999999988899999999985 89999987666788889999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
++|+|+|+.. ......||+.|+|||++.+. .++.++|||||||++|||++|..|
T Consensus 133 ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~ 212 (346)
T 1ua2_A 133 ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPF 212 (346)
T ss_dssp CCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCS
T ss_pred EECCCCCHHHEEEcCCCCEEEEecccceeccCCcccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCC
Confidence 9999998531 11223589999999998664 589999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHh-CCC--Ccccc---ccccccchh---hhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKES-LPH--RLSEV---VDTNLVREE---QAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~-~~~--~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|..... ...+....... .+. .+... .+....... +...........+.+++.+|++.||++|||+.|+++
T Consensus 213 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 291 (346)
T 1ua2_A 213 LPGDSD-LDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK 291 (346)
T ss_dssp SCCSSH-HHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred CCCCCH-HHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence 865321 11122222211 111 11100 000000000 000011233467899999999999999999999986
No 271
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=99.89 E-value=1e-23 Score=221.71 Aligned_cols=198 Identities=18% Similarity=0.162 Sum_probs=139.3
Q ss_pred Cchhhhhhccccccccceecccccc--------------------------------------ccccceeeccCCCCChH
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSN--------------------------------------PDFKALVLEFMPNGSLE 490 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~--------------------------------------~~~~~lv~ey~~~g~L~ 490 (669)
..+|+.+++.++|+|++++++++.. ....++||||++ |+|.
T Consensus 47 ~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~ 125 (383)
T 3eb0_A 47 KNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLH 125 (383)
T ss_dssp CCHHHHHHTTCCCTTBCCEEEEEEEC-------------------------------------CCEEEEEECCCS-EEHH
T ss_pred HHHHHHHHHHcCCCCccchhheeeecCcccccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHH
Confidence 4579999999999999999998733 234779999998 6888
Q ss_pred Hhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc-------------------------ccccc
Q 040540 491 KWLYS---HNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV-------------------------TQTTT 542 (669)
Q Consensus 491 ~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~-------------------------~~~~~ 542 (669)
+.+.. .+..+++.....++.|+++||+|||. .+|+|||+|+.. .....
T Consensus 126 ~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~----~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~ 201 (383)
T 3eb0_A 126 KVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHS----LGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAY 201 (383)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT----TTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH----CcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCc
Confidence 87763 45678999999999999999999994 489999998531 11223
Q ss_pred ccccccCccccccCC-CcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCC----------Ccccccccc
Q 040540 543 MATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPH----------RLSEVVDTN 611 (669)
Q Consensus 543 ~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~~ 611 (669)
.||+.|+|||++.+. .++.++||||+||++|||++|+.||..... ...+...++..-.. ...+..-+.
T Consensus 202 ~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~ 280 (383)
T 3eb0_A 202 ICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETS-IDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPT 280 (383)
T ss_dssp CCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCC
T ss_pred ccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHhCCCCHHHHHHhCcccccccCCc
Confidence 578999999988764 489999999999999999999999975321 11122222111100 000011111
Q ss_pred ccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 612 LVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.....+...+...+..+.+++.+||+.||.+|||+.|+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (383)
T 3eb0_A 281 LKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMA 321 (383)
T ss_dssp CCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred cCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 11111001112234556889999999999999999999985
No 272
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=99.89 E-value=3.3e-24 Score=221.18 Aligned_cols=181 Identities=18% Similarity=0.184 Sum_probs=142.7
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|+.++..++|+|++++++++...+..++||||+++++|.+++... ..+++.++..++.++++||+|||..
T Consensus 86 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~---- 160 (335)
T 2owb_A 86 EKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRR-KALTEPEARYYLRQIVLGCQYLHRN---- 160 (335)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEecCCCCCHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 34667899999999999999999999988999999999999999998753 4589999999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
+++|+|+++.. ......||+.|+|||++.+..++.++|||||||++|||++|+.|
T Consensus 161 ~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p 240 (335)
T 2owb_A 161 RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPP 240 (335)
T ss_dssp TEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEecCCCchhEEEcCCCCEEEeeccCceecccCcccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCC
Confidence 79999998531 01123589999999999888899999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|...... .....+.... ... +......+.+++.+||+.||++||++.|+++
T Consensus 241 f~~~~~~--~~~~~~~~~~-~~~-----------------~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 241 FETSCLK--ETYLRIKKNE-YSI-----------------PKHINPVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp TCCSSHH--HHHHHHHHTC-CCC-----------------CTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred CCCCCHH--HHHHHHhcCC-CCC-----------------CccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 9653211 1111111110 000 1112245678999999999999999999976
No 273
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=99.89 E-value=1e-23 Score=224.05 Aligned_cols=198 Identities=17% Similarity=0.148 Sum_probs=138.3
Q ss_pred Cchhhhhhccccccccceecccccc------ccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhh
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSN------PDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~------~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
..+|+.+++.++|+|++++++++.. ....++||||+++ ++.+.+.. ....+++.....++.|+++||+||
T Consensus 94 ~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~L 172 (420)
T 1j1b_A 94 KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYI 172 (420)
T ss_dssp CCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999888743 2235789999985 67666642 346789999999999999999999
Q ss_pred hcCCCCCCeeecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHH
Q 040540 520 RHGHSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLM 573 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~ 573 (669)
|. .+|+|||+|+.. .....+||+.|+|||++.+. .|+.++|||||||++|
T Consensus 173 H~----~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ 248 (420)
T 1j1b_A 173 HS----FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLA 248 (420)
T ss_dssp HT----TTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHH
T ss_pred HH----CCccccCCChhhEEEeCCCCeEEeccchhhhhcccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHH
Confidence 94 489999999430 11233589999999998764 6999999999999999
Q ss_pred HHHhCCCCCCcCCCCCccHHHHHHHhCC----------CCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 574 ETFTRKRPTDEMFTGEMSLRRWVKESLP----------HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 574 el~tg~~p~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||++|+.||.... ....+...++..-. ....+...+.+................+.+++.+||+.||.+
T Consensus 249 ell~G~~pf~~~~-~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~ 327 (420)
T 1j1b_A 249 ELLLGQPIFPGDS-GVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTA 327 (420)
T ss_dssp HHHHSSCSSCCSS-HHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGG
T ss_pred HHHhCCCCCCCCC-HHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhH
Confidence 9999999997632 11122222221110 001111111111110000001123457889999999999999
Q ss_pred CCCHHHHHH
Q 040540 644 RMHMTDAAA 652 (669)
Q Consensus 644 Rps~~~v~~ 652 (669)
||++.|+++
T Consensus 328 R~t~~e~l~ 336 (420)
T 1j1b_A 328 RLTPLEACA 336 (420)
T ss_dssp SCCHHHHHT
T ss_pred CCCHHHHhC
Confidence 999999975
No 274
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=99.89 E-value=7.2e-24 Score=217.88 Aligned_cols=185 Identities=16% Similarity=0.177 Sum_probs=141.2
Q ss_pred cCchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 448 SFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 448 ~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.+..|+..+..++ |||++++++++......++||||+++|+|.+++... ...+++..+..++.++++||+|||..
T Consensus 74 ~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~--- 150 (327)
T 3lm5_A 74 EILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN--- 150 (327)
T ss_dssp HHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---
Confidence 4567888888884 699999999999988999999999999999998643 35689999999999999999999954
Q ss_pred CCeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhC
Q 040540 526 APIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 526 ~~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+|+... .....||+.|+|||++.+..++.++||||+||++|||+||
T Consensus 151 -givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g 229 (327)
T 3lm5_A 151 -NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTH 229 (327)
T ss_dssp -TEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred -CeecCcCChHHEEEecCCCCCcEEEeeCccccccCCccccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhC
Confidence 799999985310 1122589999999999988899999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||..... ......+...... ... +........+.+++.+||+.||++|||++|+++
T Consensus 230 ~~pf~~~~~--~~~~~~i~~~~~~-~~~-------------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 230 TSPFVGEDN--QETYLNISQVNVD-YSE-------------ETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp SCSSCCSSH--HHHHHHHHHTCCC-CCT-------------TTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CCCCCCCCc--hHHHHHHHhcccc-cCc-------------hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence 999965321 1111111111100 000 001123445789999999999999999999975
No 275
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=99.89 E-value=6.2e-24 Score=212.87 Aligned_cols=180 Identities=21% Similarity=0.291 Sum_probs=135.5
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|||++++++++......++||||+++++|.+++... ..+++.....++.++++|++|||.. +
T Consensus 57 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~----~ 131 (276)
T 2h6d_A 57 KIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKH-GRVEEMEARRLFQQILSAVDYCHRH----M 131 (276)
T ss_dssp HHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEEeccCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 4567899999999999999999999888999999999999999999754 3588999999999999999999954 7
Q ss_pred eeecCCCCcc------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
++|+|+++.. ......||+.|+|||...+..+ +.++||||||+++|||++|+.||
T Consensus 132 i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~ 211 (276)
T 2h6d_A 132 VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPF 211 (276)
T ss_dssp SSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred CccCCCChhhEEECCCCCEEEeecccccccCCCcceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCC
Confidence 9999998531 0112347899999999887664 68999999999999999999998
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.... ...+...+...... . +......+.+++.+|++.||++|||+.|+++
T Consensus 212 ~~~~--~~~~~~~~~~~~~~-~-----------------~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~ 261 (276)
T 2h6d_A 212 DDEH--VPTLFKKIRGGVFY-I-----------------PEYLNRSVATLLMHMLQVDPLKRATIKDIRE 261 (276)
T ss_dssp CCSS--HHHHHHHHHHCCCC-C-----------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred CCCc--HHHHHHHhhcCccc-C-----------------chhcCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence 6532 11122222221110 0 1112345679999999999999999999987
No 276
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=99.89 E-value=8.2e-24 Score=219.89 Aligned_cols=185 Identities=21% Similarity=0.168 Sum_probs=140.2
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
+.+..|+.++..+ .|+|++++++++......++||||+++|+|.+++... ..+++.....++.|+++||.|||..
T Consensus 103 ~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~--- 178 (355)
T 1vzo_A 103 EHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQR-ERFTEHEVQIYVGEIVLALEHLHKL--- 178 (355)
T ss_dssp GGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHccCCCceeEEEEEEeeCceEEEEeecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC---
Confidence 4566789999998 5999999999998888899999999999999999753 4588999999999999999999954
Q ss_pred CCeeecCCCCcc--------------------------cccccccccccCccccccC--CCcCccccchhhHHHHHHHHh
Q 040540 526 APIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 526 ~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gvil~el~t 577 (669)
+|+|||+|+.. ......||+.|+|||++.+ ..++.++|||||||++|||+|
T Consensus 179 -~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~ 257 (355)
T 1vzo_A 179 -GIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLT 257 (355)
T ss_dssp -TCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHH
T ss_pred -CcccCCCCHHHEEECCCCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHH
Confidence 79999999530 0112358999999999875 347899999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-----CHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-----HMTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-----s~~~v~~ 652 (669)
|+.||....... ............. +. .+.+....+.+++.+||..||.+|| ++.|+++
T Consensus 258 g~~pf~~~~~~~-~~~~~~~~~~~~~------~~---------~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~ 321 (355)
T 1vzo_A 258 GASPFTVDGEKN-SQAEISRRILKSE------PP---------YPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE 321 (355)
T ss_dssp SSCTTSCTTSCC-CHHHHHHHHHHCC------CC---------CCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred CCCCCccCCccc-hHHHHHHHHhccC------CC---------CCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHc
Confidence 999997532221 1222221111000 00 0112234578999999999999999 8888876
No 277
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=99.89 E-value=1.7e-24 Score=227.12 Aligned_cols=185 Identities=13% Similarity=0.171 Sum_probs=133.4
Q ss_pred ccCchhh---hhhccccccccceeccccc-------ccc-----------------ccceeeccCCCCChHHhhhcCC--
Q 040540 447 RSFDSEC---EVLRNVRHRNLIKIISSCS-------NPD-----------------FKALVLEFMPNGSLEKWLYSHN-- 497 (669)
Q Consensus 447 ~~~~~e~---~~l~~l~h~niv~l~~~~~-------~~~-----------------~~~lv~ey~~~g~L~~~l~~~~-- 497 (669)
+.+..|+ ..+..++|||++++++.+. .++ ..++||||+ +|+|.+++...+
T Consensus 118 ~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~ 196 (377)
T 3byv_A 118 KQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSH 196 (377)
T ss_dssp HHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhcccc
Confidence 4566788 5666778999999985443 221 367999999 589999997532
Q ss_pred ----CccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc----------------------cccccccccccCcc
Q 040540 498 ----YFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV----------------------TQTTTMATIGYMAP 551 (669)
Q Consensus 498 ----~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aP 551 (669)
..+++..+..|+.|+++||+|||.. +|+|||+|+.. ......| +.|+||
T Consensus 197 ~~~~~~l~~~~~~~i~~qi~~aL~~LH~~----~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aP 271 (377)
T 3byv_A 197 SSTHKSLVHHARLQLTLQVIRLLASLHHY----GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVS-RGFEPP 271 (377)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHT----TEECSCCCGGGEEECTTCCEEECCGGGCEETTCEEECCCC-TTCCCH
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhC----CeecCCCCHHHEEEcCCCCEEEEechhheecCCcccCCCC-cCccCh
Confidence 2344678889999999999999954 79999999541 1122347 999999
Q ss_pred ccccCC-----------CcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhh
Q 040540 552 EYGSEG-----------IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFS 620 (669)
Q Consensus 552 E~~~~~-----------~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (669)
|++.+. .++.++|||||||++|||+||+.||........ ...+.. .
T Consensus 272 E~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~~-------------~~~~~~-~--------- 328 (377)
T 3byv_A 272 ELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGG-------------SEWIFR-S--------- 328 (377)
T ss_dssp HHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------CC-------------SGGGGS-S---------
T ss_pred hhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccccc-------------hhhhhh-h---------
Confidence 999877 799999999999999999999999965321110 011110 0
Q ss_pred hhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH--HHHHhHHHh
Q 040540 621 AKMDCLLSIMDLALDCCMESPDKRMHMTDAAA--KLKKIKVKF 661 (669)
Q Consensus 621 ~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~--~l~~~~~~~ 661 (669)
....+..+.+++.+||+.||++|||+.|+++ .++++....
T Consensus 329 -~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~~~~ 370 (377)
T 3byv_A 329 -CKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLRTEL 370 (377)
T ss_dssp -CCCCCHHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHHHHHHH
T ss_pred -ccCCCHHHHHHHHHHcCCCchhCCCHHHHhhChHHHHHHHHH
Confidence 0122345789999999999999999999986 555555443
No 278
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=99.89 E-value=2.3e-23 Score=217.63 Aligned_cols=186 Identities=14% Similarity=0.054 Sum_probs=143.0
Q ss_pred cCchhhhhhcccc---ccccceeccccccccccceeeccCCCCChHHhhhc----CCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 448 SFDSECEVLRNVR---HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS----HNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 448 ~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~----~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
.+..|...+..++ |+|++.+++++...+..++|||||++|+|.+++.. ....+++..+..|+.|+++||+|||
T Consensus 110 ~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH 189 (365)
T 3e7e_A 110 EFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH 189 (365)
T ss_dssp HHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh
Confidence 3445666665555 99999999999999999999999999999999974 3456999999999999999999999
Q ss_pred cCCCCCCeeecCCCCcc--------------------------------------cccccccccccCccccccCCCcCcc
Q 040540 521 HGHSSAPIIHCEGEDSV--------------------------------------TQTTTMATIGYMAPEYGSEGIVSAK 562 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~--------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~ 562 (669)
. .+|+|||+|+.. .....+||+.|||||++.+..++.+
T Consensus 190 ~----~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~ 265 (365)
T 3e7e_A 190 D----CEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQ 265 (365)
T ss_dssp T----TTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTH
T ss_pred h----CCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCcc
Confidence 4 479999998431 0112248999999999999889999
Q ss_pred ccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCC
Q 040540 563 CDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPD 642 (669)
Q Consensus 563 ~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~ 642 (669)
+|||||||++|||+||+.||.....+.. .+...+.. .+ ......+++.+|++.+|.
T Consensus 266 ~DiwslG~il~elltg~~pf~~~~~~~~----------------~~~~~~~~----~~----~~~~~~~~~~~~l~~~p~ 321 (365)
T 3e7e_A 266 IDYFGVAATVYCMLFGTYMKVKNEGGEC----------------KPEGLFRR----LP----HLDMWNEFFHVMLNIPDC 321 (365)
T ss_dssp HHHHHHHHHHHHHHHSSCCCEEEETTEE----------------EECSCCTT----CS----SHHHHHHHHHHHHCCCCT
T ss_pred ccHHHHHHHHHHHHhCCCccccCCCCce----------------eechhccc----cC----cHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999854222111 00011110 00 123456889999999999
Q ss_pred CC-CCHHHHHHHHHHhHHHh
Q 040540 643 KR-MHMTDAAAKLKKIKVKF 661 (669)
Q Consensus 643 ~R-ps~~~v~~~l~~~~~~~ 661 (669)
+| |+++++.+.|+++.+..
T Consensus 322 ~r~~~~~~l~~~l~~~l~~~ 341 (365)
T 3e7e_A 322 HHLPSLDLLRQKLKKVFQQH 341 (365)
T ss_dssp TCCCCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHh
Confidence 98 58899998888876553
No 279
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=99.89 E-value=2.8e-23 Score=223.14 Aligned_cols=195 Identities=19% Similarity=0.151 Sum_probs=137.7
Q ss_pred ccCchhhhhhccccccccceecccccccc------ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD------FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
+.+.+|+.+++.++||||+++++++.... ..++|||||++ ++.+.+.. .+++..+..++.|+++||+|||
T Consensus 106 ~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~~-~l~~~~~~---~l~~~~~~~~~~qil~aL~~lH 181 (464)
T 3ttj_A 106 KRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH 181 (464)
T ss_dssp HHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSE-EHHHHHTS---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCeEEEEEeCCCC-CHHHHHhh---cCCHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999886543 45899999985 57777753 3888999999999999999999
Q ss_pred cCCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 521 HGHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.. +|+|||+|+.. .....+||+.|+|||++.+..|+.++||||+||++|||+
T Consensus 182 ~~----~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell 257 (464)
T 3ttj_A 182 SA----GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 257 (464)
T ss_dssp HT----TCCCCCCCGGGEEECTTSCEEECCCCCC-----CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHH
T ss_pred HC----CcccCCCChHhEEEeCCCCEEEEEEEeeeecCCCcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 54 79999999541 122346899999999999989999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhC-C--------------------CC----ccccccccccchhhhhhhhHHHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESL-P--------------------HR----LSEVVDTNLVREEQAFSAKMDCLLSIMD 631 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~-~--------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (669)
+|+.||.+.... ..+...++..- + .. +.......+.. ............+.+
T Consensus 258 ~g~~pF~g~~~~-~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~d 334 (464)
T 3ttj_A 258 RHKILFPGRDYI-DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFP--ADSEHNKLKASQARD 334 (464)
T ss_dssp HSSCSSCCSSHH-HHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSC--CSSHHHHHHHHHHHH
T ss_pred hCCCCCCCCCHH-HHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccc--cccccccccCHHHHH
Confidence 999999753210 11111111100 0 00 00000000000 000112234667899
Q ss_pred HHhhcccCCCCCCCCHHHHHH
Q 040540 632 LALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 632 l~~~c~~~~P~~Rps~~~v~~ 652 (669)
++.+|++.||++|||++|+++
T Consensus 335 Ll~~mL~~dP~~R~ta~e~L~ 355 (464)
T 3ttj_A 335 LLSKMLVIDPAKRISVDDALQ 355 (464)
T ss_dssp HHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHcCCChhhCCCHHHHhc
Confidence 999999999999999999986
No 280
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=99.89 E-value=8.6e-24 Score=213.47 Aligned_cols=180 Identities=20% Similarity=0.190 Sum_probs=134.5
Q ss_pred hhhhhccccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCe
Q 040540 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGHSSAPI 528 (669)
Q Consensus 452 e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i 528 (669)
+...++..+|||++++++++......++||||++ |+|.+++.. .+..+++..+..|+.++++|++|||.. .++
T Consensus 56 ~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~~i 131 (290)
T 3fme_A 56 LDISMRTVDCPFTVTFYGALFREGDVWICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSK---LSV 131 (290)
T ss_dssp HHHHHTTCCCTTBCCEEEEEECSSSEEEEEECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---SCC
T ss_pred HHHHHHhCCCCeEEEEeeeeeccCCEEEEEehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhc---CCe
Confidence 3444777899999999999999889999999998 588888754 456789999999999999999999942 279
Q ss_pred eecCCCCcc------------------------cccccccccccCccccc----cCCCcCccccchhhHHHHHHHHhCCC
Q 040540 529 IHCEGEDSV------------------------TQTTTMATIGYMAPEYG----SEGIVSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 529 ~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+|+|+|+.. ......||+.|+|||++ .+..++.++||||+||++|||+||+.
T Consensus 132 ~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~ 211 (290)
T 3fme_A 132 IHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRF 211 (290)
T ss_dssp CCCCCSGGGCEECTTCCEEBCCC---------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSC
T ss_pred ecCCCCHHHEEECCCCCEEEeecCCcccccccccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCC
Confidence 999999541 01122589999999995 45668999999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
||.........+........+... ....+..+.+++.+|++.||++|||+.|+++
T Consensus 212 p~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 212 PYDSWGTPFQQLKQVVEEPSPQLP-----------------ADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp SSCCCSCHHHHHHHHHHSCCCCCC-----------------TTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CccccCchHHHHHHHhccCCCCcc-----------------cccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 997532222222222222111100 1122345789999999999999999999987
No 281
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=99.89 E-value=5e-24 Score=219.55 Aligned_cols=199 Identities=20% Similarity=0.180 Sum_probs=143.7
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+..|+..+..++|||++++++++......++||||++++++.+++.. ...+++.....++.++++|++|||.. +
T Consensus 70 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~----~ 144 (331)
T 4aaa_A 70 IAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELF-PNGLDYQVVQKYLFQIINGIGFCHSH----N 144 (331)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHS-TTCCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEecCCcchHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHHC----C
Confidence 456789999999999999999999988889999999999999888764 34589999999999999999999954 7
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHHHHHhCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
++|+|+++.. ......||+.|+|||++.+. .++.++||||+||++|||+||+.|
T Consensus 145 ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p 224 (331)
T 4aaa_A 145 IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPL 224 (331)
T ss_dssp CCCCCCCGGGEEECTTSCEEECCCTTC------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred EEccCcChheEEEcCCCcEEEEeCCCceeecCCccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCC
Confidence 9999999541 01223589999999998775 689999999999999999999999
Q ss_pred CCcCCCCCccHHHHHHHhCC------------CCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 582 TDEMFTGEMSLRRWVKESLP------------HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
|...... ..+...+...-. ........+.+.............+..+.+++.+||+.||++|||+.|
T Consensus 225 f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e 303 (331)
T 4aaa_A 225 FPGDSDI-DQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAE 303 (331)
T ss_dssp CCCSSHH-HHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGG
T ss_pred CCCCCcH-HHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHH
Confidence 9753211 111111111000 000000011111110001112234567899999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
+++
T Consensus 304 ll~ 306 (331)
T 4aaa_A 304 LLH 306 (331)
T ss_dssp GGG
T ss_pred Hhc
Confidence 986
No 282
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=99.89 E-value=6.6e-24 Score=219.23 Aligned_cols=189 Identities=20% Similarity=0.230 Sum_probs=128.2
Q ss_pred ccCchhhhhhcccc-ccccceeccccc--------cccccceeeccCCCCChHHhhhc--CCCccCHHHHHHHHHhHHhh
Q 040540 447 RSFDSECEVLRNVR-HRNLIKIISSCS--------NPDFKALVLEFMPNGSLEKWLYS--HNYFLDILERLNIMIDVGSA 515 (669)
Q Consensus 447 ~~~~~e~~~l~~l~-h~niv~l~~~~~--------~~~~~~lv~ey~~~g~L~~~l~~--~~~~l~~~~~~~i~~~i~~~ 515 (669)
+.+..|+..+..+. |||++++++++. .....+++|||+. |+|.+++.. ....+++..+..|+.+++.|
T Consensus 70 ~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~ 148 (337)
T 3ll6_A 70 RAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRA 148 (337)
T ss_dssp HHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCChhhccccccccccccccCCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Confidence 34667888898886 999999998873 3445689999996 799999864 34568999999999999999
Q ss_pred hhhhhcCCCCCCeeecCCCCccc--------------c-----------------------cccccccccCccccc---c
Q 040540 516 LEYLRHGHSSAPIIHCEGEDSVT--------------Q-----------------------TTTMATIGYMAPEYG---S 555 (669)
Q Consensus 516 l~~lh~~~~~~~i~h~d~~~~~~--------------~-----------------------~~~~gt~~y~aPE~~---~ 555 (669)
|+|||.. .++++|+|+|+... . ....||+.|+|||++ .
T Consensus 149 l~~LH~~--~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~ 226 (337)
T 3ll6_A 149 VQHMHRQ--KPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYS 226 (337)
T ss_dssp HHHHHTS--SSCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC-------------------------------CCT
T ss_pred HHHHHhC--CCCEEEccCCcccEEECCCCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccc
Confidence 9999954 23499999995310 0 022488999999998 4
Q ss_pred CCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhh
Q 040540 556 EGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALD 635 (669)
Q Consensus 556 ~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (669)
+..++.++|||||||++|||+||+.||...... ........... .......+.+++.+
T Consensus 227 ~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~-----~~~~~~~~~~~-----------------~~~~~~~~~~li~~ 284 (337)
T 3ll6_A 227 NFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL-----RIVNGKYSIPP-----------------HDTQYTVFHSLIRA 284 (337)
T ss_dssp TSCSSHHHHHHHHHHHHHHHHHSSCCC-----------------CCCCT-----------------TCCSSGGGHHHHHH
T ss_pred cCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH-----HhhcCcccCCc-----------------ccccchHHHHHHHH
Confidence 566899999999999999999999998652211 11111110000 01111236789999
Q ss_pred cccCCCCCCCCHHHHHHHHHHhHHH
Q 040540 636 CCMESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
||+.||.+||++.|+++.|+++...
T Consensus 285 ~l~~~p~~Rps~~e~l~~l~~~~~~ 309 (337)
T 3ll6_A 285 MLQVNPEERLSIAEVVHQLQEIAAA 309 (337)
T ss_dssp HSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HccCChhhCcCHHHHHHHHHHHHhc
Confidence 9999999999999999999998765
No 283
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.2e-23 Score=212.40 Aligned_cols=226 Identities=18% Similarity=0.164 Sum_probs=178.1
Q ss_pred CCCCEEeCCCCcCcccCCc---ccCCCCCCCEEEccCCcCCccCCccc--cCCcccccccccccCccccCC----cccCC
Q 040540 75 SFLVSLDISENNFHGHLPK---ELGQLRRLRVMSLAYNKLSGSFPSWI--GVLSKLRILRLDYNNFTGPIP----NSLFN 145 (669)
Q Consensus 75 ~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~ 145 (669)
..++.|.+.++.+....-. .+..+++|++|++++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3578888888776532111 12234669999999999998888887 889999999999999987555 34567
Q ss_pred CCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCccc--C--CccccCCCCCCEEEccCCCCCCCCCc----cccC
Q 040540 146 LSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQ--I--PTEIGSLQNLKNLDLADNKLSGLIPP----TIFN 217 (669)
Q Consensus 146 l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~--~--p~~~~~l~~L~~L~l~~N~l~~~~p~----~~~~ 217 (669)
+++|++|++++|.+.+..|..++.+++|++|++++|++.+. + +..++.+++|++|++++|.++.. +. .+.+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhc
Confidence 89999999999999888888999999999999999998652 2 23346888999999999999743 32 2467
Q ss_pred CCCCcEEEcccCCCccccchhhhcc--CCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCC
Q 040540 218 ISTMRILTLESNQLSGRLPSTIGHS--LRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLS 295 (669)
Q Consensus 218 l~~L~~L~l~~n~l~~~~p~~~~~~--l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~ 295 (669)
+++|++|++++|.+++..|..+..- +++|++|++++|+++ .+|..+. ++|+.|++++|.+.+. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 8999999999999987777666531 269999999999998 5676664 7999999999999864 43 67889999
Q ss_pred EEEccCCcccc
Q 040540 296 VLNVMMNNLTT 306 (669)
Q Consensus 296 ~L~l~~N~l~~ 306 (669)
.|++++|.++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999998865
No 284
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=99.89 E-value=1.5e-23 Score=218.84 Aligned_cols=197 Identities=20% Similarity=0.194 Sum_probs=140.4
Q ss_pred ccCchhhhhhccccccccceecccccccc------ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD------FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
+.+.+|+.++..++|||++++++++.... ..++||||+ +++|.++++. ..+++.....++.|+++||+|||
T Consensus 69 ~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~~~~qi~~~L~~LH 145 (367)
T 1cm8_A 69 KRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKH--EKLGEDRIQFLVYQMLKGLRYIH 145 (367)
T ss_dssp HHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceEEEEEecC-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 34667999999999999999999887653 358999999 7899999975 35888999999999999999999
Q ss_pred cCCCCCCeeecCCCCcc----------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHh
Q 040540 521 HGHSSAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~t 577 (669)
.. +|+|||+|+.. .....+||+.|+|||++.+ ..++.++||||+||++|||++
T Consensus 146 ~~----~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~ 221 (367)
T 1cm8_A 146 AA----GIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMIT 221 (367)
T ss_dssp HT----TEECCCCCGGGEEECTTCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HC----CccccCcCHHHEEEcCCCCEEEEeeecccccccccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHh
Confidence 54 79999999541 1223468999999999877 679999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhC-CC-Ccccccc-----------ccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCC
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESL-PH-RLSEVVD-----------TNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKR 644 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~-~~-~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~R 644 (669)
|+.||...... ..+...+.... +. .....+. +...... ...........+.+++.+|++.||++|
T Consensus 222 g~~pf~~~~~~-~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~mL~~dP~~R 299 (367)
T 1cm8_A 222 GKTLFKGSDHL-DQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKD-FASILTNASPLAVNLLEKMLVLDAEQR 299 (367)
T ss_dssp SSCSSCCSSHH-HHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCC-GGGTCTTCCHHHHHHHHHHSCSSTTTS
T ss_pred CCCCCCCCCHH-HHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCC-HHHHCCCCCHHHHHHHHHHccCChhHC
Confidence 99999753210 11111111100 00 0000000 0000000 000012334568899999999999999
Q ss_pred CCHHHHHH
Q 040540 645 MHMTDAAA 652 (669)
Q Consensus 645 ps~~~v~~ 652 (669)
||++|+++
T Consensus 300 ~t~~e~l~ 307 (367)
T 1cm8_A 300 VTAGEALA 307 (367)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHhc
Confidence 99999987
No 285
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=99.89 E-value=1.2e-23 Score=212.24 Aligned_cols=180 Identities=13% Similarity=0.164 Sum_probs=138.3
Q ss_pred ccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcC---CCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSH---NYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~---~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
..+..|+..+..+ +|||++++++++...+..++||||+++|+|.+++... ...+++..+..|+.++++||+|||.
T Consensus 55 ~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~- 133 (289)
T 1x8b_A 55 QNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHS- 133 (289)
T ss_dssp HHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHh-
Confidence 3455677788877 8999999999999888999999999999999999753 2458999999999999999999995
Q ss_pred CCCCCeeecCCCCccc----------------------------------------ccccccccccCccccccCC-CcCc
Q 040540 523 HSSAPIIHCEGEDSVT----------------------------------------QTTTMATIGYMAPEYGSEG-IVSA 561 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~~----------------------------------------~~~~~gt~~y~aPE~~~~~-~~~~ 561 (669)
.+++|+|+|+... .....||+.|+|||++.+. .++.
T Consensus 134 ---~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~ 210 (289)
T 1x8b_A 134 ---MSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLP 210 (289)
T ss_dssp ---TTEECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTCSCCCCCCGGGCCHHHHTTCCTTHH
T ss_pred ---CCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCccccCCCccccChhHhcCCCCCCc
Confidence 4799999985311 1112478999999998775 5778
Q ss_pred cccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCC
Q 040540 562 KCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESP 641 (669)
Q Consensus 562 ~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P 641 (669)
++|||||||++|||++|+.|+... . ....+...... .+ +......+.+++.+||+.||
T Consensus 211 ~~Di~slG~il~~l~~~~~~~~~~----~-~~~~~~~~~~~--------~~---------~~~~~~~~~~li~~~l~~dp 268 (289)
T 1x8b_A 211 KADIFALALTVVCAAGAEPLPRNG----D-QWHEIRQGRLP--------RI---------PQVLSQEFTELLKVMIHPDP 268 (289)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCSSS----H-HHHHHHTTCCC--------CC---------SSCCCHHHHHHHHHHTCSSG
T ss_pred hhhHHHHHHHHHHHhcCCCCCcch----h-HHHHHHcCCCC--------CC---------CcccCHHHHHHHHHHhCCCc
Confidence 999999999999999999775431 1 11111111110 01 11123457899999999999
Q ss_pred CCCCCHHHHHH
Q 040540 642 DKRMHMTDAAA 652 (669)
Q Consensus 642 ~~Rps~~~v~~ 652 (669)
++|||+.|+++
T Consensus 269 ~~Rps~~~ll~ 279 (289)
T 1x8b_A 269 ERRPSAMALVK 279 (289)
T ss_dssp GGSCCHHHHHT
T ss_pred ccCCCHHHHhh
Confidence 99999999975
No 286
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=99.89 E-value=8.1e-24 Score=217.96 Aligned_cols=198 Identities=18% Similarity=0.197 Sum_probs=140.9
Q ss_pred ccCchhhhhhcccc-ccccceecccccc--ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVR-HRNLIKIISSCSN--PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~-h~niv~l~~~~~~--~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+..|+.++..++ |+|++++++++.. ....++||||+++++|.+++.. +++.+...++.++++|++|||.
T Consensus 75 ~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~----~~~~~~~~~~~qi~~~l~~lH~-- 148 (330)
T 3nsz_A 75 KKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQT----LTDYDIRFYMYEILKALDYCHS-- 148 (330)
T ss_dssp HHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECCCCCCHHHHGGG----CCHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEeccCchhHHHHHHh----CCHHHHHHHHHHHHHHHHHHHh--
Confidence 34667999999997 9999999999877 5567899999999999999863 7888999999999999999995
Q ss_pred CCCCeeecCCCCcc-------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHh
Q 040540 524 SSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 524 ~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+++|+|+|+.. ......||..|+|||++.+ ..++.++||||+||++|||++
T Consensus 149 --~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~ 226 (330)
T 3nsz_A 149 --MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIF 226 (330)
T ss_dssp --TTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH
T ss_pred --CCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHh
Confidence 479999999531 1122358899999999877 668999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHH------------HhCCC---Cccccccccc---cchhhhhhhhHHHHHHHHHHHhhcccC
Q 040540 578 RKRPTDEMFTGEMSLRRWVK------------ESLPH---RLSEVVDTNL---VREEQAFSAKMDCLLSIMDLALDCCME 639 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~------------~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~c~~~ 639 (669)
|+.||.........+..... ..... ...+...... .........+......+.+++.+|++.
T Consensus 227 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~ 306 (330)
T 3nsz_A 227 RKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRY 306 (330)
T ss_dssp TCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCS
T ss_pred CCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcC
Confidence 99999643222111211111 11000 0000000000 000000011122456789999999999
Q ss_pred CCCCCCCHHHHHH
Q 040540 640 SPDKRMHMTDAAA 652 (669)
Q Consensus 640 ~P~~Rps~~~v~~ 652 (669)
||++|||++|+++
T Consensus 307 dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 307 DHQSRLTAREAME 319 (330)
T ss_dssp SGGGSCCHHHHHT
T ss_pred CcccCCCHHHHhc
Confidence 9999999999976
No 287
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.4e-23 Score=223.30 Aligned_cols=183 Identities=18% Similarity=0.238 Sum_probs=136.4
Q ss_pred cCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+.++..+ +||||+++++++......++|||||+ |+|.+++........+.+...++.|+++||+|||..
T Consensus 63 ~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---- 137 (432)
T 3p23_A 63 FADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSL---- 137 (432)
T ss_dssp ECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHC----
Confidence 356789999888 79999999999998888999999997 699999987655555566778999999999999954
Q ss_pred CeeecCCCCccc---------------------------------ccccccccccCccccccC---CCcCccccchhhHH
Q 040540 527 PIIHCEGEDSVT---------------------------------QTTTMATIGYMAPEYGSE---GIVSAKCDVYSYGV 570 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------------~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~s~Gv 570 (669)
+|+|||+|+... .....||+.|+|||++.+ ..++.++|||||||
T Consensus 138 ~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~ 217 (432)
T 3p23_A 138 NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGC 217 (432)
T ss_dssp TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHH
T ss_pred cCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHH
Confidence 799999985310 011248999999999873 55788999999999
Q ss_pred HHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHH
Q 040540 571 LLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTD 649 (669)
Q Consensus 571 il~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~ 649 (669)
++|||+| |+.||...... .... ........... ........+.+++.+||+.||.+|||+.|
T Consensus 218 il~ellt~g~~pf~~~~~~---~~~~---~~~~~~~~~~~-----------~~~~~~~~~~~li~~~L~~dP~~Rps~~e 280 (432)
T 3p23_A 218 VFYYVISEGSHPFGKSLQR---QANI---LLGACSLDCLH-----------PEKHEDVIARELIEKMIAMDPQKRPSAKH 280 (432)
T ss_dssp HHHHHHTTSCBTTBSTTTH---HHHH---HTTCCCCTTSC-----------TTCHHHHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred HHHHHHcCCCCCcchhhHH---HHHH---HhccCCccccC-----------ccccccHHHHHHHHHHHhCCHhhCCCHHH
Confidence 9999999 89898542211 1111 11110000010 01233455789999999999999999999
Q ss_pred HHH
Q 040540 650 AAA 652 (669)
Q Consensus 650 v~~ 652 (669)
|++
T Consensus 281 vl~ 283 (432)
T 3p23_A 281 VLK 283 (432)
T ss_dssp HHT
T ss_pred HHh
Confidence 984
No 288
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=99.89 E-value=1e-23 Score=218.16 Aligned_cols=181 Identities=21% Similarity=0.236 Sum_probs=136.4
Q ss_pred hhhhh-hccccccccceeccccccccccceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 451 SECEV-LRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 451 ~e~~~-l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.|... +..++|+|++++++++...+..++||||+++ +|.+++.. ....+++..+..|+.++++||+|||.. .
T Consensus 98 ~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~---~ 173 (340)
T 3an0_A 98 MDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSK---L 173 (340)
T ss_dssp HHHHHHHTTCCCTTTCCEEEEEECSSCEEEEECCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHH---T
T ss_pred HHHHHHHhhcCCCcEEEEeeEEEeCCcEEEEHHHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhc---C
Confidence 34443 6778999999999999988899999999984 99988864 456789999999999999999999942 3
Q ss_pred CeeecCCCCccc------------------------ccccccccccCcccccc----CCCcCccccchhhHHHHHHHHhC
Q 040540 527 PIIHCEGEDSVT------------------------QTTTMATIGYMAPEYGS----EGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 527 ~i~h~d~~~~~~------------------------~~~~~gt~~y~aPE~~~----~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
+++|+|+|+... .....||+.|+|||++. ...++.++|||||||++|||+||
T Consensus 174 ~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg 253 (340)
T 3an0_A 174 SVIHRDVKPSNVLINALGQVKMCDFGISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAIL 253 (340)
T ss_dssp CCCCCSCCSTTEEECSTTCEEECCCSHHHHHSCHHHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred CeecCCCCHHHEEECCCCCEEEeeCCCceecccccccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHC
Confidence 799999996410 11135899999999864 34689999999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||.........+...+....+. .. .......+.+++.+||..||++||++.|+++
T Consensus 254 ~~p~~~~~~~~~~~~~~~~~~~~~---------~~--------~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 254 RFPYDSWGTPFQQLKQVVEEPSPQ---------LP--------ADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp SCSSCCCSCHHHHHHHHHHSCCCC---------CC--------GGGSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCCCccccchHHHHHHHhcCCCCC---------CC--------cccCCHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 999975322111122222111110 00 1122346789999999999999999999976
No 289
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.5e-22 Score=198.03 Aligned_cols=196 Identities=15% Similarity=0.112 Sum_probs=155.8
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCc-CCccCCccccCCcccccccccc-cCccccCCcccCCCCCCCeee
Q 040540 76 FLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK-LSGSFPSWIGVLSKLRILRLDY-NNFTGPIPNSLFNLSRLEMLR 153 (669)
Q Consensus 76 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~ 153 (669)
+|++|++++|.+++..+..|..+++|++|++++|+ +.+..+..|.++++|++|+|++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78888888888887777788888888888888886 7766666788888888888888 888877777888888888888
Q ss_pred cccccccccCCcccCCCCCCC---EEEcccC-CCcccCCccccCCCCCC-EEEccCCCCCCCCCccccCCCCCcEEEccc
Q 040540 154 AEFNIIGGTIPSRIGNLRKLV---NLGLWSC-NLQGQIPTEIGSLQNLK-NLDLADNKLSGLIPPTIFNISTMRILTLES 228 (669)
Q Consensus 154 l~~n~l~~~~p~~~~~L~~L~---~L~l~~n-~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 228 (669)
+++|.+.+ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ +|++++|.++ .+|...+..++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 88888876 665 78888887 8999988 88877777788888899 9999999888 4455444447889999999
Q ss_pred CC-CccccchhhhccC-CCCCeeecccCcccccCCccccCCCCCCEEeCCCC
Q 040540 229 NQ-LSGRLPSTIGHSL-RNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFN 278 (669)
Q Consensus 229 n~-l~~~~p~~~~~~l-~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n 278 (669)
|. ++ .+|...+..+ ++|++|++++|++++..+. .+++|+.|+++++
T Consensus 189 n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcc-cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 95 76 5655555567 8899999999988754433 5677888888765
No 290
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=99.88 E-value=1.4e-23 Score=213.01 Aligned_cols=199 Identities=20% Similarity=0.202 Sum_probs=142.7
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+..+..++|||++++++++...+..++||||++ |+|.+++.... ..+++.....++.++++|++|||..
T Consensus 48 ~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---- 122 (299)
T 2r3i_A 48 TAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---- 122 (299)
T ss_dssp HHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEEccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 45678999999999999999999998888999999998 69999997543 4588899999999999999999954
Q ss_pred CeeecCCCCcc-------------------------cccccccccccCccccccCCC-cCccccchhhHHHHHHHHhCCC
Q 040540 527 PIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGI-VSAKCDVYSYGVLLMETFTRKR 580 (669)
Q Consensus 527 ~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gvil~el~tg~~ 580 (669)
+++|+|+++.. ......||+.|+|||+..+.. ++.++|||||||++|||+||+.
T Consensus 123 ~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~ 202 (299)
T 2r3i_A 123 RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRA 202 (299)
T ss_dssp TCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CccCCCCCHHHeEEcCCCCEEECcchhhhhccCCccccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCC
Confidence 79999998531 112235799999999987755 7899999999999999999999
Q ss_pred CCCcCCCCCccHHHHHHHhC-CCC--cccc-----ccccccch-hhhh-hhhHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q 040540 581 PTDEMFTGEMSLRRWVKESL-PHR--LSEV-----VDTNLVRE-EQAF-SAKMDCLLSIMDLALDCCMESPDKRMHMTDA 650 (669)
Q Consensus 581 p~~~~~~~~~~l~~~~~~~~-~~~--~~~~-----~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v 650 (669)
||..... ...+....+... +.. +... ..+..... ...+ .........+.+++.+|++.||++|||+.|+
T Consensus 203 pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~ 281 (299)
T 2r3i_A 203 LFPGDSE-IDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAA 281 (299)
T ss_dssp SCCCSSH-HHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred CCCCccH-HHHHHHHHHHhCCCchhhhhHhhcCcccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHH
Confidence 9975321 111222222111 110 0000 00000000 0000 0011234567899999999999999999999
Q ss_pred HH
Q 040540 651 AA 652 (669)
Q Consensus 651 ~~ 652 (669)
++
T Consensus 282 l~ 283 (299)
T 2r3i_A 282 LA 283 (299)
T ss_dssp HT
T ss_pred hc
Confidence 76
No 291
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3e-24 Score=223.84 Aligned_cols=267 Identities=15% Similarity=0.148 Sum_probs=155.3
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCC----cccCCCC-CCCEEEccCCcCCccCCccccCC-----ccc
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLP----KELGQLR-RLRVMSLAYNKLSGSFPSWIGVL-----SKL 125 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L 125 (669)
++++.++++|.+|..+...++|++|||++|.+.+..+ ..|..++ +|++|+|++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677888888777766666678888888888876665 6677777 78888888888877666666664 788
Q ss_pred ccccccccCccccCCcccC----CC-CCCCeeecccccccccCCcccC----C-CCCCCEEEcccCCCcccC----Cccc
Q 040540 126 RILRLDYNNFTGPIPNSLF----NL-SRLEMLRAEFNIIGGTIPSRIG----N-LRKLVNLGLWSCNLQGQI----PTEI 191 (669)
Q Consensus 126 ~~L~L~~n~l~~~~p~~~~----~l-~~L~~L~l~~n~l~~~~p~~~~----~-L~~L~~L~l~~n~l~~~~----p~~~ 191 (669)
++|+|++|.+++..+..++ .+ ++|++|++++|.+++..+..+. . .++|++|++++|.++... +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 8888888887765555333 33 6677777777766655443332 2 246666666666665322 2223
Q ss_pred cCCC-CCCEEEccCCCCCCCCCccccC----C-CCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCcccc
Q 040540 192 GSLQ-NLKNLDLADNKLSGLIPPTIFN----I-STMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSIT 265 (669)
Q Consensus 192 ~~l~-~L~~L~l~~N~l~~~~p~~~~~----l-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~ 265 (669)
..++ +|++|++++|.+++..+..+.. . ++|++|++++|.+++.-.. .++..+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~---------------------~l~~~l~ 221 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA---------------------ELAYIFS 221 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH---------------------HHHHHHH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH---------------------HHHHHHh
Confidence 3333 5666666666665544433322 2 3555555555555421100 0122222
Q ss_pred C-CCCCCEEeCCCCCccccCc----cccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCcccc
Q 040540 266 N-ATKLIGLDLGFNSFSGHIP----NTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGIL 340 (669)
Q Consensus 266 ~-l~~L~~L~ls~n~l~~~~p----~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 340 (669)
. .++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+...... ........+..+++|+.|++++|++....
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~-~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE-QCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH-HHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHH-HHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 2 2345555555555544322 2345566677777777764433210 00112234556777888888888887664
Q ss_pred chhH
Q 040540 341 PQLI 344 (669)
Q Consensus 341 ~~~~ 344 (669)
+..+
T Consensus 301 ~~~~ 304 (362)
T 3goz_A 301 SIPI 304 (362)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 4433
No 292
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=99.88 E-value=1.7e-23 Score=220.57 Aligned_cols=198 Identities=17% Similarity=0.155 Sum_probs=136.2
Q ss_pred Cchhhhhhccccccccceecccccccc------ccceeeccCCCCChHHhhh---cCCCccCHHHHHHHHHhHHhhhhhh
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPD------FKALVLEFMPNGSLEKWLY---SHNYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~lv~ey~~~g~L~~~l~---~~~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
..+|+.+++.++|+|++++++++.... ..++||||++++ +.+.+. .....+++.....++.|+++||+||
T Consensus 79 ~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~L 157 (394)
T 4e7w_A 79 KNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPET-VYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYI 157 (394)
T ss_dssp CCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEECCSEE-HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeeccCcc-HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 346999999999999999999885432 367999999864 444433 1345689999999999999999999
Q ss_pred hcCCCCCCeeecCCCCcc-------------------------cccccccccccCccccccCC-CcCccccchhhHHHHH
Q 040540 520 RHGHSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEG-IVSAKCDVYSYGVLLM 573 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~s~Gvil~ 573 (669)
|. .+|+|||+|+.. ......||+.|+|||++.+. .++.++||||+||++|
T Consensus 158 H~----~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ 233 (394)
T 4e7w_A 158 HS----IGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMA 233 (394)
T ss_dssp HH----TTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHH
T ss_pred HH----CCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 95 479999999531 11233589999999988764 5899999999999999
Q ss_pred HHHhCCCCCCcCCCCCccHHHHHHHhC-CC---------CccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 574 ETFTRKRPTDEMFTGEMSLRRWVKESL-PH---------RLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 574 el~tg~~p~~~~~~~~~~l~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||++|+.||..... ...+...++..- +. .......+.+.........+......+.+++.+||+.||.+
T Consensus 234 ell~g~~pf~~~~~-~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~ 312 (394)
T 4e7w_A 234 ELMQGQPLFPGESG-IDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSA 312 (394)
T ss_dssp HHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGG
T ss_pred HHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhh
Confidence 99999999975321 111222222110 00 00000000111000000011224457899999999999999
Q ss_pred CCCHHHHHH
Q 040540 644 RMHMTDAAA 652 (669)
Q Consensus 644 Rps~~~v~~ 652 (669)
|||+.|+++
T Consensus 313 R~t~~e~l~ 321 (394)
T 4e7w_A 313 RLTAIEALC 321 (394)
T ss_dssp SCCHHHHHT
T ss_pred CCCHHHHhc
Confidence 999999975
No 293
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=99.88 E-value=2.8e-23 Score=221.22 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=111.2
Q ss_pred cCchhhhhhccc------cccccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhh
Q 040540 448 SFDSECEVLRNV------RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 448 ~~~~e~~~l~~l------~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
.+..|+.++..+ .|+|++++++.+......++||||+. ++|.+++.... ..+++..+..|+.++++||+|||
T Consensus 139 ~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH 217 (429)
T 3kvw_A 139 QAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALH 217 (429)
T ss_dssp HHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344566666655 57799999999998889999999997 69999997643 35899999999999999999999
Q ss_pred cCCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 521 HGHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.. +|+|||+|+.. .....+||+.|+|||++.+..++.++|||||||++|||+
T Consensus 218 ~~----~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell 293 (429)
T 3kvw_A 218 KN----RIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELL 293 (429)
T ss_dssp HH----TEECSCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHH
T ss_pred HC----CeecCCCCHHHeEEccCCCcceEEeecccceecCCcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHH
Confidence 54 79999999531 112335899999999999988999999999999999999
Q ss_pred hCCCCCCcC
Q 040540 577 TRKRPTDEM 585 (669)
Q Consensus 577 tg~~p~~~~ 585 (669)
||+.||...
T Consensus 294 tG~~pf~~~ 302 (429)
T 3kvw_A 294 TGYPLLPGE 302 (429)
T ss_dssp HSSCSSCCS
T ss_pred hCCCCCCCC
Confidence 999999753
No 294
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=99.88 E-value=2e-23 Score=211.73 Aligned_cols=184 Identities=22% Similarity=0.238 Sum_probs=141.9
Q ss_pred cCchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 448 SFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 448 ~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
.+..|+.++.++. |||++++++++......++||||+++++|.+++... ..+++.....++.++++|++|||..
T Consensus 69 ~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---- 143 (298)
T 1phk_A 69 ATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK-VTLSEKETRKIMRALLEVICALHKL---- 143 (298)
T ss_dssp HHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhcCCCCEeeeeeeeccCCeEEEEEeccCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 4567888999996 999999999999888999999999999999999753 4689999999999999999999954
Q ss_pred CeeecCCCCcc------------------------cccccccccccCcccccc------CCCcCccccchhhHHHHHHHH
Q 040540 527 PIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGS------EGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 527 ~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~s~Gvil~el~ 576 (669)
+++|+|+++.. ......||+.|+|||++. ...++.++||||||+++|||+
T Consensus 144 ~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~ 223 (298)
T 1phk_A 144 NIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLL 223 (298)
T ss_dssp TEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHH
T ss_pred CcccCCCCcceEEEcCCCcEEEecccchhhcCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHH
Confidence 79999998531 112235899999999874 455889999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||.... .......+....... .. +.....+..+.+++.+||+.||.+|||+.|+++
T Consensus 224 ~g~~p~~~~~--~~~~~~~~~~~~~~~----~~----------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 224 AGSPPFWHRK--QMLMLRMIMSGNYQF----GS----------PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp HSSCSSCCSS--HHHHHHHHHHTCCCC----CT----------TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred HCCCCCcCcc--HHHHHHHHhcCCccc----Cc----------ccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 9999986532 111222221111100 00 011233456789999999999999999999975
No 295
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=99.88 E-value=2.3e-23 Score=209.40 Aligned_cols=186 Identities=11% Similarity=0.080 Sum_probs=139.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
+.+..|...+..++|+|++++++++...+..++||||+++++|.++++.. ....+..+|+.++++||+|||..
T Consensus 76 ~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~---~~~~~~~~i~~ql~~aL~~lH~~---- 148 (286)
T 3uqc_A 76 QETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAAHRA---- 148 (286)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEEEecCCCCHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHC----
Confidence 45678889999999999999999999888899999999999999999642 34557888999999999999954
Q ss_pred CeeecCCCCcccc-----cccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCC
Q 040540 527 PIIHCEGEDSVTQ-----TTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLP 601 (669)
Q Consensus 527 ~i~h~d~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~ 601 (669)
+|+|||+|+.... ...+++.+|++| ++.++|||||||++|||+||+.||.........
T Consensus 149 givH~Dikp~NIll~~~g~~kl~~~~~~~~-------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~---------- 211 (286)
T 3uqc_A 149 GVALSIDHPSRVRVSIDGDVVLAYPATMPD-------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGL---------- 211 (286)
T ss_dssp TCCCCCCSGGGEEEETTSCEEECSCCCCTT-------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCS----------
T ss_pred CCccCCCCcccEEEcCCCCEEEEeccccCC-------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhh----------
Confidence 7999999976432 223467788875 689999999999999999999999763321100
Q ss_pred CCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHhHHH
Q 040540 602 HRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAAKLKKIKVK 660 (669)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~~l~~~~~~ 660 (669)
......+....... .....+.+..+.+++.+||+.||++| |+.|+++.|+++...
T Consensus 212 ~~~~~~~~~~~~~~---~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~ 266 (286)
T 3uqc_A 212 APAERDTAGQPIEP---ADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAV 266 (286)
T ss_dssp EECCBCTTSCBCCH---HHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC-
T ss_pred HHHHHHhccCCCCh---hhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhcc
Confidence 00000000000000 00112344568899999999999999 999999999998644
No 296
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.6e-22 Score=196.33 Aligned_cols=194 Identities=15% Similarity=0.183 Sum_probs=107.9
Q ss_pred CCCEEEccCCcCCccCCccccCCcccccccccccC-ccccCCcccCCCCCCCeeeccc-ccccccCCcccCCCCCCCEEE
Q 040540 100 RLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNN-FTGPIPNSLFNLSRLEMLRAEF-NIIGGTIPSRIGNLRKLVNLG 177 (669)
Q Consensus 100 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~L~~L~~L~ 177 (669)
+|++|++++|++.+..+..|+++++|++|++++|+ +++..+..|.++++|++|++++ |.+.+..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55566666666655444455566666666666664 5544444555666666666665 555555555555666666666
Q ss_pred cccCCCcccCCccccCCCCCC---EEEccCC-CCCCCCCccccCCCCCc-EEEcccCCCccccchhhhccCCCCCeeecc
Q 040540 178 LWSCNLQGQIPTEIGSLQNLK---NLDLADN-KLSGLIPPTIFNISTMR-ILTLESNQLSGRLPSTIGHSLRNIEYLALS 252 (669)
Q Consensus 178 l~~n~l~~~~p~~~~~l~~L~---~L~l~~N-~l~~~~p~~~~~l~~L~-~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls 252 (669)
+++|.+++ +|. +..+++|+ +|++++| .+++..+..|.++++|+ .|++++|.++ .+|...+.. ++|++|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence 66666554 443 55555555 6666666 55555444555566666 6666666655 455444432 556666666
Q ss_pred cCc-ccccCCccccCC-CCCCEEeCCCCCccccCccccCCCCCCCEEEcc
Q 040540 253 TNN-LIGKIPNSITNA-TKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVM 300 (669)
Q Consensus 253 ~n~-l~~~~p~~~~~l-~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~ 300 (669)
+|+ +.+..+..|..+ ++|+.|++++|.+.+..+. .+++|+.|++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~ 234 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIAR 234 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECT
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeecc
Confidence 663 554444555555 5666666666665532222 34455555554
No 297
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.88 E-value=3.2e-23 Score=232.41 Aligned_cols=174 Identities=20% Similarity=0.165 Sum_probs=137.4
Q ss_pred Cchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 449 FDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 449 ~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
+..|..++..+ +|++++.+++++...+..++||||+++|+|.++++.. ..+++..+..|+.+++.||+|||. .+
T Consensus 388 ~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~----~g 462 (674)
T 3pfq_A 388 TMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV-GRFKEPHAVFYAAEIAIGLFFLQS----KG 462 (674)
T ss_dssp HHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH----TS
T ss_pred HHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEEEeCcCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh----CC
Confidence 44567777766 7999999999999888999999999999999999864 458999999999999999999995 48
Q ss_pred eeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 528 IIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 528 i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+|||+|+.. ...+..||+.|||||++.+..|+.++|||||||++|||+||+.||
T Consensus 463 IiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf 542 (674)
T 3pfq_A 463 IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPF 542 (674)
T ss_dssp EECCCCCSTTEEECSSSCEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSS
T ss_pred eEeccCChhhEEEcCCCcEEEeecceeeccccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCC
Confidence 9999999541 112346999999999999999999999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
.... ...+.+.+... . + ..+......+.+++.+|++.||++||++
T Consensus 543 ~~~~--~~~~~~~i~~~---~--------~-------~~p~~~s~~~~~li~~lL~~dP~~R~~~ 587 (674)
T 3pfq_A 543 EGED--EDELFQSIMEH---N--------V-------AYPKSMSKEAVAICKGLMTKHPGKRLGC 587 (674)
T ss_dssp CCSS--HHHHHHHHHSS---C--------C-------CCCTTSCHHHHHHHHHHSCSSSTTCTTC
T ss_pred CCCC--HHHHHHHHHhC---C--------C-------CCCccCCHHHHHHHHHHccCCHHHCCCC
Confidence 7532 11122211111 0 0 0011234567899999999999999997
No 298
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=99.88 E-value=1.6e-23 Score=220.61 Aligned_cols=197 Identities=21% Similarity=0.253 Sum_probs=137.7
Q ss_pred cCchhhhhhcccc-ccccceecccccccc--ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 448 SFDSECEVLRNVR-HRNLIKIISSCSNPD--FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 448 ~~~~e~~~l~~l~-h~niv~l~~~~~~~~--~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+..|+..+..+. |+|++++++++...+ ..++|||||+ |+|.++++. ..+++..+..++.|+++||+|||..
T Consensus 54 ~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~--~~~~~~~~~~i~~qi~~~L~~LH~~-- 128 (388)
T 3oz6_A 54 RTFREIMILTELSGHENIVNLLNVLRADNDRDVYLVFDYME-TDLHAVIRA--NILEPVHKQYVVYQLIKVIKYLHSG-- 128 (388)
T ss_dssp HHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEEEEECCS-EEHHHHHHH--TCCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEEEecccC-cCHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC--
Confidence 4557888888887 999999999986543 6799999998 699999975 3588899999999999999999954
Q ss_pred CCCeeecCCCCcc--------------c--------------------------------ccccccccccCccccccC-C
Q 040540 525 SAPIIHCEGEDSV--------------T--------------------------------QTTTMATIGYMAPEYGSE-G 557 (669)
Q Consensus 525 ~~~i~h~d~~~~~--------------~--------------------------------~~~~~gt~~y~aPE~~~~-~ 557 (669)
+|+|||+|+.. . ....+||+.|+|||++.+ .
T Consensus 129 --~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~ 206 (388)
T 3oz6_A 129 --GLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGST 206 (388)
T ss_dssp --TEECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCC
T ss_pred --CEEeCCCCHHHeEEcCCCCEEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCC
Confidence 79999999531 0 012368999999999876 6
Q ss_pred CcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHh-CCCC--ccccccc------------------cccch-
Q 040540 558 IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKES-LPHR--LSEVVDT------------------NLVRE- 615 (669)
Q Consensus 558 ~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~-~~~~--~~~~~~~------------------~~~~~- 615 (669)
.++.++||||+||++|||++|+.||...... ..+...+... .|.. +..+..+ .....
T Consensus 207 ~~~~~~DiwSlG~il~ell~g~~pf~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (388)
T 3oz6_A 207 KYTKGIDMWSLGCILGEILCGKPIFPGSSTM-NQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIF 285 (388)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCH
T ss_pred CCCChhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhC
Confidence 6899999999999999999999999753211 1111111110 0100 0000000 00000
Q ss_pred ------hhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 616 ------EQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 616 ------~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
......+..+...+.+++.+||+.||++|||++|+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~e~l~ 328 (388)
T 3oz6_A 286 TKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALK 328 (388)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred cchhhhcccccccccCCHHHHHHHHHhhccCcccCCCHHHHhC
Confidence 0000001133457889999999999999999999975
No 299
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=99.88 E-value=5.2e-23 Score=213.81 Aligned_cols=198 Identities=18% Similarity=0.213 Sum_probs=139.6
Q ss_pred cCchhhhhhccccccccceecccccc--------ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhh
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSN--------PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYL 519 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~--------~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~l 519 (669)
.+..|+.++..++|+|++++++++.. ....++||||++ |++.+.+......+++.++..|+.++++||+||
T Consensus 62 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~L 140 (351)
T 3mi9_A 62 TALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCE-HDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYI 140 (351)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEEEEEC--------CEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcccHhheeeccccccccCCceEEEEEeccC-CCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999998865 345789999998 588888876666799999999999999999999
Q ss_pred hcCCCCCCeeecCCCCcc-----------------------------cccccccccccCccccccC-CCcCccccchhhH
Q 040540 520 RHGHSSAPIIHCEGEDSV-----------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYG 569 (669)
Q Consensus 520 h~~~~~~~i~h~d~~~~~-----------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~G 569 (669)
|.. +|+|+|+|+.. ......||+.|+|||++.+ ..++.++||||||
T Consensus 141 H~~----~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG 216 (351)
T 3mi9_A 141 HRN----KILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAG 216 (351)
T ss_dssp HHT----TEECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHH
T ss_pred HHC----CeeCCCCCHHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHH
Confidence 954 79999999531 0112357999999998876 4589999999999
Q ss_pred HHHHHHHhCCCCCCcCCCCCccHHHHHHH---hCCCC-cccccccc----c---cchhhhhhh---hHHHHHHHHHHHhh
Q 040540 570 VLLMETFTRKRPTDEMFTGEMSLRRWVKE---SLPHR-LSEVVDTN----L---VREEQAFSA---KMDCLLSIMDLALD 635 (669)
Q Consensus 570 vil~el~tg~~p~~~~~~~~~~l~~~~~~---~~~~~-~~~~~~~~----~---~~~~~~~~~---~~~~~~~~~~l~~~ 635 (669)
|++|||+||+.||..... ......+.. ..+.. ....-... + ......... .......+.+++.+
T Consensus 217 ~il~ell~g~~pf~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 294 (351)
T 3mi9_A 217 CIMAEMWTRSPIMQGNTE--QHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDK 294 (351)
T ss_dssp HHHHHHHHSSCSCCCSSH--HHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCh--HHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHH
Confidence 999999999999976321 111111111 11111 11100000 0 000000000 00113457899999
Q ss_pred cccCCCCCCCCHHHHHH
Q 040540 636 CCMESPDKRMHMTDAAA 652 (669)
Q Consensus 636 c~~~~P~~Rps~~~v~~ 652 (669)
|++.||++|||+.|+++
T Consensus 295 ~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 295 LLVLDPAQRIDSDDALN 311 (351)
T ss_dssp HSCSSGGGSCCHHHHHT
T ss_pred HhcCChhhCCCHHHHhC
Confidence 99999999999999976
No 300
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=99.88 E-value=4.8e-23 Score=216.47 Aligned_cols=133 Identities=19% Similarity=0.190 Sum_probs=109.7
Q ss_pred Cchhhhhhcccc-cc-----ccceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhc
Q 040540 449 FDSECEVLRNVR-HR-----NLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 449 ~~~e~~~l~~l~-h~-----niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
+..|...+..++ |+ +++++++++......++||||++ |+|.+++.... ..+++..+..++.+++.|+.|||.
T Consensus 97 ~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~ 175 (382)
T 2vx3_A 97 AQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLAT 175 (382)
T ss_dssp HHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcccccceeEEEeeeeeccCCceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 445666666664 33 48888999888889999999997 59999998643 458999999999999999999994
Q ss_pred CCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHh
Q 040540 522 GHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
. ..+|+|||+|+.. ......||+.|+|||++.+..++.++|||||||++|||+|
T Consensus 176 ~--~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt 253 (382)
T 2vx3_A 176 P--ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHT 253 (382)
T ss_dssp T--TTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH
T ss_pred C--CCCEEcCCCCcccEEEecCCCCcEEEEeccCceecccccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHh
Confidence 2 4689999999541 1122358999999999999889999999999999999999
Q ss_pred CCCCCCc
Q 040540 578 RKRPTDE 584 (669)
Q Consensus 578 g~~p~~~ 584 (669)
|+.||..
T Consensus 254 g~~pf~~ 260 (382)
T 2vx3_A 254 GEPLFSG 260 (382)
T ss_dssp SSCSSCC
T ss_pred CCCCCCC
Confidence 9999975
No 301
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=99.88 E-value=7.5e-23 Score=214.07 Aligned_cols=194 Identities=18% Similarity=0.128 Sum_probs=136.7
Q ss_pred ccCchhhhhhccccccccceecccccccc------ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPD------FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
+.+..|+..+..++|||++++++++.... ..++||||++ |+|.+++.. .+++.....++.|+++||+|||
T Consensus 69 ~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~lH 144 (371)
T 2xrw_A 69 KRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMD-ANLCQVIQM---ELDHERMSYLLYQMLCGIKHLH 144 (371)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCEEEEEEECCS-EEHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccceEEeeccccccccccceEEEEEcCC-CCHHHHHhh---ccCHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999886654 5689999998 588888863 3788899999999999999999
Q ss_pred cCCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHH
Q 040540 521 HGHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~ 576 (669)
.. +|+|||+|+.. ......||+.|+|||++.+..++.++||||+||++|||+
T Consensus 145 ~~----~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~ 220 (371)
T 2xrw_A 145 SA----GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMI 220 (371)
T ss_dssp HT----TCCCSCCCGGGEEECTTSCEEECCCCC----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHH
T ss_pred HC----CeecccCCHHHEEEcCCCCEEEEEeecccccccccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHH
Confidence 54 79999999541 012235899999999999888999999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCcc--------------------------ccccccccchhhhhhhhHHHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLS--------------------------EVVDTNLVREEQAFSAKMDCLLSIM 630 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (669)
||+.||..... ......+......... ......... ............+.
T Consensus 221 ~g~~pf~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 296 (371)
T 2xrw_A 221 KGGVLFPGTDH--IDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFP--ADSEHNKLKASQAR 296 (371)
T ss_dssp HSSCSSCCSSH--HHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSC--CSSHHHHHHHHHHH
T ss_pred hCCCCCCCCCH--HHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCc--ccccccccccHHHH
Confidence 99999975321 1111111110000000 000000000 00011234466789
Q ss_pred HHHhhcccCCCCCCCCHHHHHH
Q 040540 631 DLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 631 ~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+++.+|++.||++|||++|+++
T Consensus 297 ~li~~mL~~dP~~R~t~~e~l~ 318 (371)
T 2xrw_A 297 DLLSKMLVIDASKRISVDEALQ 318 (371)
T ss_dssp HHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHHHHCcCChhhCCCHHHHhC
Confidence 9999999999999999999986
No 302
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=99.88 E-value=2.6e-23 Score=220.03 Aligned_cols=202 Identities=18% Similarity=0.220 Sum_probs=141.3
Q ss_pred ccCchhhhhhcccc--------ccccceeccccc----cccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHH
Q 040540 447 RSFDSECEVLRNVR--------HRNLIKIISSCS----NPDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVG 513 (669)
Q Consensus 447 ~~~~~e~~~l~~l~--------h~niv~l~~~~~----~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~ 513 (669)
+.+..|+.++..++ |+|++++++.+. .....++||||+ ++++.+++... ...+++.....|+.|++
T Consensus 78 ~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~ 156 (397)
T 1wak_A 78 ETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVL 156 (397)
T ss_dssp HHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 34567888888876 788999999887 556789999999 46676666543 35689999999999999
Q ss_pred hhhhhhhcCCCCCCeeecCCCCccc-------------------------------------------------------
Q 040540 514 SALEYLRHGHSSAPIIHCEGEDSVT------------------------------------------------------- 538 (669)
Q Consensus 514 ~~l~~lh~~~~~~~i~h~d~~~~~~------------------------------------------------------- 538 (669)
+||+|||.. .+|+|||+|+...
T Consensus 157 ~aL~~lH~~---~givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (397)
T 1wak_A 157 QGLDYLHTK---CRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKL 233 (397)
T ss_dssp HHHHHHHHT---TCEECCCCSGGGEEECCCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGC
T ss_pred HHHHHHHHh---CCEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCccccccccccccccccccc
Confidence 999999952 2799999995411
Q ss_pred ----------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCcc-----HHHHHH
Q 040540 539 ----------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMS-----LRRWVK 597 (669)
Q Consensus 539 ----------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~-----l~~~~~ 597 (669)
.....||+.|+|||++.+..++.++|||||||++|||+||+.||......... +.....
T Consensus 234 ~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~ 313 (397)
T 1wak_A 234 KVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIE 313 (397)
T ss_dssp CEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHH
T ss_pred ceEeccccccccccccCccCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHH
Confidence 01124799999999999888999999999999999999999999754322211 111111
Q ss_pred H--hCCCC-----------------ccccccc---cccc-hhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 598 E--SLPHR-----------------LSEVVDT---NLVR-EEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 598 ~--~~~~~-----------------~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
. ..+.. .....+. .+.. .......+.+....+.+++.+||+.||++|||+.||++
T Consensus 314 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 314 LLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp HHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred hcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 0 00000 0000000 0000 00011224566778999999999999999999999975
No 303
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=99.88 E-value=3e-23 Score=216.55 Aligned_cols=200 Identities=17% Similarity=0.148 Sum_probs=140.0
Q ss_pred ccCchhhhhhccccccccceecccccc-----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN-----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~-----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
+.+..|+.++..++|||++++++++.. ....++||||++ |++.+++......+++..+..++.++++|+.|||.
T Consensus 74 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~ 152 (362)
T 3pg1_A 74 KRVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHE 152 (362)
T ss_dssp HHHHHHHHHHHHCCCTTBCCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCccceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999998843 335689999998 79999998766679999999999999999999995
Q ss_pred CCCCCCeeecCCCCcc------------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHH
Q 040540 522 GHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETF 576 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~ 576 (669)
. +++|+|+|+.. ......||+.|+|||++.+ ..++.++||||+||++|||+
T Consensus 153 ~----~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~ 228 (362)
T 3pg1_A 153 A----GVVHRDLHPGNILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMF 228 (362)
T ss_dssp T----TCCCCCCCGGGEEECTTCCEEECCTTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHH
T ss_pred C----cCEecCCChHHEEEcCCCCEEEEecCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHH
Confidence 4 79999999541 1112358899999998876 66899999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCcc-----------ccccccccchh--hhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLS-----------EVVDTNLVREE--QAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
||+.||...... ..+...+......... +.+........ ............+.+++.+|++.||++
T Consensus 229 ~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~ 307 (362)
T 3pg1_A 229 NRKALFRGSTFY-NQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQR 307 (362)
T ss_dssp HSSCSCCCSSHH-HHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGG
T ss_pred hCCCCCCCCCHH-HHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhh
Confidence 999999753211 1111111111100000 00000000000 000011223456889999999999999
Q ss_pred CCCHHHHHH
Q 040540 644 RMHMTDAAA 652 (669)
Q Consensus 644 Rps~~~v~~ 652 (669)
|||+.|+++
T Consensus 308 Rpt~~ell~ 316 (362)
T 3pg1_A 308 RISTEQALR 316 (362)
T ss_dssp SCCHHHHHT
T ss_pred CCCHHHHHc
Confidence 999999986
No 304
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=99.88 E-value=2.6e-23 Score=209.67 Aligned_cols=184 Identities=20% Similarity=0.231 Sum_probs=141.8
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+..+..++|||++++++++......++||||+++++|.+++... ..+++.....++.++++|+.|||..
T Consensus 66 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH~~---- 140 (287)
T 2wei_A 66 STILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR-KRFSEHDAARIIKQVFSGITYMHKH---- 140 (287)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEEEccCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC----
Confidence 34667899999999999999999999888899999999999999998753 3589999999999999999999954
Q ss_pred CeeecCCCCccc---------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 527 PIIHCEGEDSVT---------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 527 ~i~h~d~~~~~~---------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
+++|+|+++... .....||+.|+|||...+. ++.++||||||+++|||++|+
T Consensus 141 ~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~ 219 (287)
T 2wei_A 141 NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGT 219 (287)
T ss_dssp TCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSCSCHHHHHTTCCHHHHTTC-CCTHHHHHHHHHHHHHHHHSS
T ss_pred CeeccCCChhhEEEecCCCcccEEEeccCcceeecCCCccccccCcccccChHHhcCC-CCCchhhHhHHHHHHHHHhCC
Confidence 799999985310 0112378899999988654 889999999999999999999
Q ss_pred CCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 580 RPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 580 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.||.... ...+...+...... . . .+.....+..+.+++.+|+..||++|||+.|+++
T Consensus 220 ~p~~~~~--~~~~~~~~~~~~~~-~------~-------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 220 PPFYGKN--EYDILKRVETGKYA-F------D-------LPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp CSSCCSS--HHHHHHHHHHCCCC-C------C-------SGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred CCCCCCC--HHHHHHHHHcCCCC-C------C-------chhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 9987532 11222222211100 0 0 0011223456789999999999999999999986
No 305
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=206.63 Aligned_cols=226 Identities=19% Similarity=0.216 Sum_probs=183.4
Q ss_pred CCCCEEEccCCcCCcc-CCc--cccCCcccccccccccCccccCCccc--CCCCCCCeeecccccccccCC----cccCC
Q 040540 99 RRLRVMSLAYNKLSGS-FPS--WIGVLSKLRILRLDYNNFTGPIPNSL--FNLSRLEMLRAEFNIIGGTIP----SRIGN 169 (669)
Q Consensus 99 ~~L~~L~L~~n~l~~~-~p~--~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~l~~n~l~~~~p----~~~~~ 169 (669)
..++.|.+.++.+... +.. .+..+++|++|+|++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4578888888877531 111 12335679999999999999999988 899999999999999987665 44567
Q ss_pred CCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC--C--CccccCCCCCcEEEcccCCCccccch---hhhcc
Q 040540 170 LRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL--I--PPTIFNISTMRILTLESNQLSGRLPS---TIGHS 242 (669)
Q Consensus 170 L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--~--p~~~~~l~~L~~L~l~~n~l~~~~p~---~~~~~ 242 (669)
+++|++|++++|.+.+..|..|+.+++|++|++++|.+.+. + +..+..+++|++|++++|.++ .++. .+...
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 99999999999999988889999999999999999998752 2 223468899999999999996 3333 34446
Q ss_pred CCCCCeeecccCcccccCCccccCC---CCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccc
Q 040540 243 LRNIEYLALSTNNLIGKIPNSITNA---TKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSS 319 (669)
Q Consensus 243 l~~L~~L~ls~n~l~~~~p~~~~~l---~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 319 (669)
+++|++|++++|++.+..|..+..+ ++|+.|++++|.+. .+|..+. ++|+.|++++|++++.+ .
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~----------~ 289 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP----------Q 289 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC----------C
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc----------h
Confidence 8999999999999998888777776 69999999999998 5676664 79999999999998752 2
Q ss_pred cCCCCCCCEEECcCCCCcc
Q 040540 320 LTNCRNLSNLALASNPLGG 338 (669)
Q Consensus 320 l~~l~~L~~L~l~~n~l~~ 338 (669)
+..+++|+.|++++|+++.
T Consensus 290 ~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTSCCCCSCEECSSTTTSC
T ss_pred hhhCCCccEEECcCCCCCC
Confidence 3567899999999999864
No 306
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=99.88 E-value=2.2e-23 Score=214.97 Aligned_cols=182 Identities=18% Similarity=0.184 Sum_probs=118.0
Q ss_pred hhccccccccceecccccc----ccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcCCCCCCee
Q 040540 455 VLRNVRHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHGHSSAPII 529 (669)
Q Consensus 455 ~l~~l~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~ 529 (669)
.+....|+|++++++++.. ....++||||+++|+|.+++.... ..+++.++..++.++++||.|||.. +++
T Consensus 75 ~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~----~iv 150 (336)
T 3fhr_A 75 HWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH----NIA 150 (336)
T ss_dssp HHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHT----TEE
T ss_pred HHHhcCCCChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC----Cee
Confidence 3456689999999998865 445789999999999999998643 3689999999999999999999954 799
Q ss_pred ecCCCCccc--------------------------ccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 530 HCEGEDSVT--------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 530 h~d~~~~~~--------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
|+|+|+... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.
T Consensus 151 H~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~ 230 (336)
T 3fhr_A 151 HRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFY 230 (336)
T ss_dssp CSCCSGGGEEESCSSTTCCEEECCCTTCEEC----------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-
T ss_pred cCCCCHHHEEEEecCCCceEEEeccccceeccccccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence 999985310 112247899999999988889999999999999999999999996
Q ss_pred cCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 584 EMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
........ ............ ... .+.+...+..+.+++.+|++.||.+|||+.|+++
T Consensus 231 ~~~~~~~~--~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 231 SNTGQAIS--PGMKRRIRLGQY-----GFP-----NPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp ---------------------------CCC-----TTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred Cccchhhh--hhHHHhhhcccc-----ccC-----chhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 53221110 000000000000 000 0111234456789999999999999999999987
No 307
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=99.88 E-value=3.4e-23 Score=221.08 Aligned_cols=184 Identities=18% Similarity=0.216 Sum_probs=132.3
Q ss_pred Cchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCcc------CHHHHHHHHHhHHhhhhhhhc
Q 040540 449 FDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFL------DILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 449 ~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l------~~~~~~~i~~~i~~~l~~lh~ 521 (669)
+..|+.++..+ +|||++++++++......++|||||. |+|.+++....... .+..+..|+.|++.||+|||.
T Consensus 55 ~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~ 133 (434)
T 2rio_A 55 ALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHS 133 (434)
T ss_dssp HHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHH
Confidence 45688888776 89999999999988889999999996 69999998643211 222356799999999999995
Q ss_pred CCCCCCeeecCCCCccc------------------------------------------ccccccccccCccccccC---
Q 040540 522 GHSSAPIIHCEGEDSVT------------------------------------------QTTTMATIGYMAPEYGSE--- 556 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~~------------------------------------------~~~~~gt~~y~aPE~~~~--- 556 (669)
.+|+|||+|+... .....||+.|+|||++.+
T Consensus 134 ----~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~ 209 (434)
T 2rio_A 134 ----LKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNN 209 (434)
T ss_dssp ----TTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCT
T ss_pred ----CCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccc
Confidence 4799999984310 011258999999998865
Q ss_pred ----CCcCccccchhhHHHHHHHHh-CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHH
Q 040540 557 ----GIVSAKCDVYSYGVLLMETFT-RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMD 631 (669)
Q Consensus 557 ----~~~~~~~Dv~s~Gvil~el~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (669)
..++.++|||||||++|||+| |+.||...... ........... . ... ..........+.+
T Consensus 210 ~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~---~~~i~~~~~~~--~-----~~~-----~~~~~~~~~~~~~ 274 (434)
T 2rio_A 210 LQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSR---ESNIIRGIFSL--D-----EMK-----CLHDRSLIAEATD 274 (434)
T ss_dssp TSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTH---HHHHHHTCCCC--C-----CCT-----TCCCHHHHHHHHH
T ss_pred cccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhh---HHHHhcCCCCc--c-----ccc-----ccccccchHHHHH
Confidence 568999999999999999999 99998653221 11122211110 0 000 0012345677899
Q ss_pred HHhhcccCCCCCCCCHHHHHH
Q 040540 632 LALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 632 l~~~c~~~~P~~Rps~~~v~~ 652 (669)
++.+||+.||.+|||+.||++
T Consensus 275 li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 275 LISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp HHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHhhCChhhCCCHHHHHh
Confidence 999999999999999999985
No 308
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.8e-24 Score=222.05 Aligned_cols=235 Identities=17% Similarity=0.196 Sum_probs=147.4
Q ss_pred CCCccceeeCCCCCCEEEEEcCCCCCcccccccccCC--CCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCcc-
Q 040540 38 ICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNL--SFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGS- 114 (669)
Q Consensus 38 ~c~~~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~- 114 (669)
+..|.++.|+. ..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+.
T Consensus 36 c~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 36 CKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp CHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred HHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence 33698887753 45788999988776 3445666 7889999999988876665 55788888888888888765
Q ss_pred CCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc-cccc-cCCcccCCCCCCCEEEcccC-CCccc-CCcc
Q 040540 115 FPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN-IIGG-TIPSRIGNLRKLVNLGLWSC-NLQGQ-IPTE 190 (669)
Q Consensus 115 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~-~~p~~~~~L~~L~~L~l~~n-~l~~~-~p~~ 190 (669)
+|..+..+++|++|+|++|.+++..|..++.+++|++|++++| .+++ .++..+.++++|++|++++| .+++. ++..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 7777888888888888888887777777777777777777777 4554 24555566666666666666 55543 3444
Q ss_pred ccCCC-CCCEEEccCC--CCC-CCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccC
Q 040540 191 IGSLQ-NLKNLDLADN--KLS-GLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITN 266 (669)
Q Consensus 191 ~~~l~-~L~~L~l~~N--~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 266 (669)
+..++ +|++|++++| .++ +.+|..+..+++|++|++++|.. +++..+..+..
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~------------------------l~~~~~~~l~~ 245 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM------------------------LKNDCFQEFFQ 245 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT------------------------CCGGGGGGGGG
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc------------------------CCHHHHHHHhC
Confidence 55555 6666666665 333 22333444444444444444441 33334444444
Q ss_pred CCCCCEEeCCCCC-ccccCccccCCCCCCCEEEccCC
Q 040540 267 ATKLIGLDLGFNS-FSGHIPNTFGNLRHLSVLNVMMN 302 (669)
Q Consensus 267 l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~l~~N 302 (669)
+++|+.|++++|. +.......+..+++|+.|++++|
T Consensus 246 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 246 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 5555555555553 11111123455566666666555
No 309
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=99.88 E-value=2.6e-23 Score=216.77 Aligned_cols=197 Identities=20% Similarity=0.213 Sum_probs=134.0
Q ss_pred ccCchhhhhhccccccccceeccccccc------cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP------DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~------~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
+.+.+|+..++.++|||++++++++... ...++|+||+ +++|.++++. ..+++..+..++.|+++||+|||
T Consensus 73 ~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH 149 (367)
T 2fst_X 73 KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKC--QKLTDDHVQFLIYQILRGLKYIH 149 (367)
T ss_dssp HHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECC-CEECC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCeEEEEeccc-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999987643 4568999999 6899999875 45899999999999999999999
Q ss_pred cCCCCCCeeecCCCCcc----------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHh
Q 040540 521 HGHSSAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~t 577 (669)
. .+|+|||+|+.. ......||+.|+|||++.+ ..++.++||||+||++|||++
T Consensus 150 ~----~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~ 225 (367)
T 2fst_X 150 S----ADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLT 225 (367)
T ss_dssp H----TTCCCCCCCGGGEEECTTCCEEECC---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHH
T ss_pred H----CCeeeCCCCHhhEEECCCCCEEEeeccccccccccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHh
Confidence 5 479999999541 1123368999999999876 678999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccc-----------cccc-hhhhh-hhhHHHHHHHHHHHhhcccCCCCCC
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDT-----------NLVR-EEQAF-SAKMDCLLSIMDLALDCCMESPDKR 644 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~-~~~~~~~~~~~~l~~~c~~~~P~~R 644 (669)
|+.||.... .......+.........+.+.. .+.. ....+ .........+.+++.+|++.||++|
T Consensus 226 g~~pf~~~~--~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R 303 (367)
T 2fst_X 226 GRTLFPGTD--HIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKR 303 (367)
T ss_dssp SSCSCCCSS--HHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGS
T ss_pred CCCCCCCCC--HHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccC
Confidence 999997532 1111111111110000000000 0000 00000 0011234567899999999999999
Q ss_pred CCHHHHHH
Q 040540 645 MHMTDAAA 652 (669)
Q Consensus 645 ps~~~v~~ 652 (669)
||+.|+++
T Consensus 304 ~t~~e~L~ 311 (367)
T 2fst_X 304 ITAAQALA 311 (367)
T ss_dssp CCHHHHHT
T ss_pred cCHHHHhc
Confidence 99999976
No 310
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=4e-24 Score=225.21 Aligned_cols=245 Identities=17% Similarity=0.196 Sum_probs=122.3
Q ss_pred ccccccCCCCCCEEeCCCCcCcccCC----cccCCCCCCCEEEccCCc---CCccCCccc-------cCCcccccccccc
Q 040540 67 IPLHFGNLSFLVSLDISENNFHGHLP----KELGQLRRLRVMSLAYNK---LSGSFPSWI-------GVLSKLRILRLDY 132 (669)
Q Consensus 67 ~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~n~---l~~~~p~~~-------~~l~~L~~L~L~~ 132 (669)
++..+..+++|++|+|++|.+.+..+ ..+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34455666777777777777765433 335567777777777753 334445443 4556666666666
Q ss_pred cCccc----cCCcccCCCCCCCeeecccccccccCCcccC----CC---------CCCCEEEcccCCCc-ccCC---ccc
Q 040540 133 NNFTG----PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIG----NL---------RKLVNLGLWSCNLQ-GQIP---TEI 191 (669)
Q Consensus 133 n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~----~L---------~~L~~L~l~~n~l~-~~~p---~~~ 191 (669)
|.+++ .+|..+..+++|++|++++|.++...+..+. .+ ++|++|++++|.++ +.+| ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 66654 3444555555555555555555432222222 22 45555555555544 2222 233
Q ss_pred cCCCCCCEEEccCCCCC--C---CCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCccc----ccCCc
Q 040540 192 GSLQNLKNLDLADNKLS--G---LIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLI----GKIPN 262 (669)
Q Consensus 192 ~~l~~L~~L~l~~N~l~--~---~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~----~~~p~ 262 (669)
..+++|++|++++|.++ | ..|..+..++ +|++|+|++|.++ +.+|.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-------------------------~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-------------------------ELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-------------------------TCCEEECCSSCCHHHHHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC-------------------------CccEEECcCCCCCcHHHHHHHH
Confidence 34445555555555444 1 1222334444 4444444444443 23344
Q ss_pred cccCCCCCCEEeCCCCCcccc----Ccccc--CCCCCCCEEEccCCccccCCCCCccccccccc-CCCCCCCEEECcCCC
Q 040540 263 SITNATKLIGLDLGFNSFSGH----IPNTF--GNLRHLSVLNVMMNNLTTESSSADQWSFLSSL-TNCRNLSNLALASNP 335 (669)
Q Consensus 263 ~~~~l~~L~~L~ls~n~l~~~----~p~~~--~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~n~ 335 (669)
.+..+++|+.|++++|.+.+. ++..+ +.+++|+.|++++|.++.... ..+...+ .++++|+.|++++|+
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~----~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV----RTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH----HHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH----HHHHHHHHhcCCCceEEEccCCc
Confidence 444455555555555555433 33333 225556666666665543100 0011122 335666777777777
Q ss_pred Ccccc
Q 040540 336 LGGIL 340 (669)
Q Consensus 336 l~~~~ 340 (669)
+++..
T Consensus 315 l~~~~ 319 (386)
T 2ca6_A 315 FSEED 319 (386)
T ss_dssp SCTTS
T ss_pred CCcch
Confidence 66554
No 311
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=99.88 E-value=6.3e-23 Score=210.87 Aligned_cols=199 Identities=22% Similarity=0.252 Sum_probs=139.4
Q ss_pred cCchhhhhhccc---cccccceeccccc-----cccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhh
Q 040540 448 SFDSECEVLRNV---RHRNLIKIISSCS-----NPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 448 ~~~~e~~~l~~l---~h~niv~l~~~~~-----~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~ 518 (669)
.+..|+..+..+ +|||++++++++. .....++||||++ |+|.+++.... ..+++..+..++.++++||+|
T Consensus 57 ~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~ 135 (326)
T 1blx_A 57 STIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDF 135 (326)
T ss_dssp THHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHH
Confidence 344567666665 8999999999886 4567789999998 69999997643 348999999999999999999
Q ss_pred hhcCCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCcCccccchhhHHHHHH
Q 040540 519 LRHGHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLME 574 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~e 574 (669)
||.. +++|+|+++.. ......||+.|+|||++.+..++.++|||||||++||
T Consensus 136 lH~~----gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ 211 (326)
T 1blx_A 136 LHSH----RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAE 211 (326)
T ss_dssp HHHT----TCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHH
T ss_pred HHHC----CceeccCCHHHeEEcCCCCEEEecCcccccccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHH
Confidence 9954 79999998531 0122358999999999988889999999999999999
Q ss_pred HHhCCCCCCcCCCCCccHHHHHHHh-CCC--Ccccccc-c--ccc--chhhhhhhhHHHHHHHHHHHhhcccCCCCCCCC
Q 040540 575 TFTRKRPTDEMFTGEMSLRRWVKES-LPH--RLSEVVD-T--NLV--REEQAFSAKMDCLLSIMDLALDCCMESPDKRMH 646 (669)
Q Consensus 575 l~tg~~p~~~~~~~~~~l~~~~~~~-~~~--~~~~~~~-~--~~~--~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps 646 (669)
|+||+.||..... ...+...+... .+. .+..... + ... ..........+....+.+++.+||+.||++|||
T Consensus 212 l~~g~~pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt 290 (326)
T 1blx_A 212 MFRRKPLFRGSSD-VDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRIS 290 (326)
T ss_dssp HHHSSCSCCCSSH-HHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCC
T ss_pred HHcCCCCCCCCCH-HHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCC
Confidence 9999999975321 11112222111 110 0000000 0 000 000000011234456789999999999999999
Q ss_pred HHHHHH
Q 040540 647 MTDAAA 652 (669)
Q Consensus 647 ~~~v~~ 652 (669)
+.|+++
T Consensus 291 ~~e~l~ 296 (326)
T 1blx_A 291 AYSALS 296 (326)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999985
No 312
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.6e-23 Score=213.74 Aligned_cols=184 Identities=19% Similarity=0.219 Sum_probs=136.2
Q ss_pred ccCchhhhhhccc-cccccceecccccc------ccccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHhHHhhhhh
Q 040540 447 RSFDSECEVLRNV-RHRNLIKIISSCSN------PDFKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 447 ~~~~~e~~~l~~l-~h~niv~l~~~~~~------~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~i~~~l~~ 518 (669)
..+..|+..+..+ +|+|++++++++.. ....++||||+++|+|.+++... ...+++.....++.+++.||+|
T Consensus 65 ~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~ 144 (326)
T 2x7f_A 65 EEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSH 144 (326)
T ss_dssp HHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHH
Confidence 3466788888888 79999999998865 45678999999999999999864 2468888999999999999999
Q ss_pred hhcCCCCCCeeecCCCCcc-------------------------cccccccccccCcccccc-----CCCcCccccchhh
Q 040540 519 LRHGHSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGS-----EGIVSAKCDVYSY 568 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~ 568 (669)
||.. +++|+|+++.. ......||+.|+|||++. ...++.++|||||
T Consensus 145 lH~~----~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~sl 220 (326)
T 2x7f_A 145 LHQH----KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSL 220 (326)
T ss_dssp HHHT----TCCCCCCSGGGEEECTTCCEEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHH
T ss_pred HHHC----CccccCCcHHHEEEcCCCCEEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHH
Confidence 9954 79999998531 011235899999999886 4568899999999
Q ss_pred HHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHH
Q 040540 569 GVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMT 648 (669)
Q Consensus 569 Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~ 648 (669)
||++|||+||+.||..... ......+....... .. ....+..+.+++.+||..||.+||++.
T Consensus 221 G~il~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~---~~-------------~~~~~~~l~~li~~~l~~dp~~Rps~~ 282 (326)
T 2x7f_A 221 GITAIEMAEGAPPLCDMHP--MRALFLIPRNPAPR---LK-------------SKKWSKKFQSFIESCLVKNHSQRPATE 282 (326)
T ss_dssp HHHHHHHHHSSCTTTTSCH--HHHHHHHHHSCCCC---CS-------------CSCSCHHHHHHHHHHCCSSGGGSCCHH
T ss_pred HHHHHHHHhCCCCCCCCcH--HHHHHHhhcCcccc---CC-------------ccccCHHHHHHHHHHhccChhhCCCHH
Confidence 9999999999999865321 11111111111100 00 011234578999999999999999999
Q ss_pred HHHH
Q 040540 649 DAAA 652 (669)
Q Consensus 649 ~v~~ 652 (669)
++++
T Consensus 283 ~ll~ 286 (326)
T 2x7f_A 283 QLMK 286 (326)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 9987
No 313
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=99.88 E-value=4.3e-23 Score=213.23 Aligned_cols=198 Identities=16% Similarity=0.187 Sum_probs=141.8
Q ss_pred cCchhhhhhccccccc------cceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhh
Q 040540 448 SFDSECEVLRNVRHRN------LIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~n------iv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
.+..|+..+..++|++ ++++++++......++||||+ +++|.+++...+ ..+++.....++.|+++||+|||
T Consensus 57 ~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH 135 (339)
T 1z57_A 57 AARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH 135 (339)
T ss_dssp HHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4556888888887765 889999998888999999999 799999998643 36889999999999999999999
Q ss_pred cCCCCCCeeecCCCCccc-----------------------------------------ccccccccccCccccccCCCc
Q 040540 521 HGHSSAPIIHCEGEDSVT-----------------------------------------QTTTMATIGYMAPEYGSEGIV 559 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~~-----------------------------------------~~~~~gt~~y~aPE~~~~~~~ 559 (669)
. .+++|+|+|+... .....||+.|+|||++.+..+
T Consensus 136 ~----~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~ 211 (339)
T 1z57_A 136 S----NKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGW 211 (339)
T ss_dssp H----TTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCC
T ss_pred H----CCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCccccccccCCccccChHHhhCCCC
Confidence 5 4799999985311 012247999999999998889
Q ss_pred CccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHh---CCCCcc------cccc-------c----------ccc
Q 040540 560 SAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKES---LPHRLS------EVVD-------T----------NLV 613 (669)
Q Consensus 560 ~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~---~~~~~~------~~~~-------~----------~~~ 613 (669)
+.++|||||||++|||+||+.||..... ......+... .+.... .... . ...
T Consensus 212 ~~~~Di~slG~il~el~~g~~pf~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (339)
T 1z57_A 212 SQPCDVWSIGCILIEYYLGFTVFPTHDS--KEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACK 289 (339)
T ss_dssp CTHHHHHHHHHHHHHHHHSSCSCCCSCH--HHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCC
T ss_pred CcchhhHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCc
Confidence 9999999999999999999999975321 1111111111 110000 0000 0 000
Q ss_pred chhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 614 REEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
...............+.+++.+||+.||++|||+.|+++
T Consensus 290 ~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 328 (339)
T 1z57_A 290 PLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALK 328 (339)
T ss_dssp CGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred chhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhc
Confidence 000000112345677899999999999999999999975
No 314
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=99.88 E-value=3.4e-23 Score=211.53 Aligned_cols=183 Identities=20% Similarity=0.296 Sum_probs=137.1
Q ss_pred ccCchhhhhhcccc--ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 447 RSFDSECEVLRNVR--HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 447 ~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
..+..|+..+..++ |+|++++++++......++||| +.+++|.+++... ..+++..+..++.++++||.|||..
T Consensus 71 ~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-- 146 (313)
T 3cek_A 71 DSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQH-- 146 (313)
T ss_dssp HHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEEEC-CCSEEHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEEEe-cCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC--
Confidence 45677899999887 4999999999999889999999 5678999999864 4688999999999999999999954
Q ss_pred CCCeeecCCCCcc--------------------------cccccccccccCccccccC-----------CCcCccccchh
Q 040540 525 SAPIIHCEGEDSV--------------------------TQTTTMATIGYMAPEYGSE-----------GIVSAKCDVYS 567 (669)
Q Consensus 525 ~~~i~h~d~~~~~--------------------------~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~s 567 (669)
+++|+|+++.. ......||+.|+|||++.+ ..++.++||||
T Consensus 147 --~ivH~dlkp~NIl~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~s 224 (313)
T 3cek_A 147 --GIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS 224 (313)
T ss_dssp --TCCCCCCCGGGEEEETTEEEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHH
T ss_pred --CceecCCCcccEEEECCeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHH
Confidence 79999999541 0112358999999998765 46888999999
Q ss_pred hHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCH
Q 040540 568 YGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHM 647 (669)
Q Consensus 568 ~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~ 647 (669)
|||++|||++|+.||.........+.... ...... .. +......+.+++.+||+.||.+||++
T Consensus 225 lG~il~el~~g~~pf~~~~~~~~~~~~~~----~~~~~~----~~---------~~~~~~~l~~li~~~l~~dp~~Rps~ 287 (313)
T 3cek_A 225 LGCILYYMTYGKTPFQQIINQISKLHAII----DPNHEI----EF---------PDIPEKDLQDVLKCCLKRDPKQRISI 287 (313)
T ss_dssp HHHHHHHHHHSSCTTTTCCSHHHHHHHHH----CTTSCC----CC---------CCCSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHH----hccccc----CC---------cccchHHHHHHHHHHccCCcccCcCH
Confidence 99999999999999975322111111111 110000 00 01112457899999999999999999
Q ss_pred HHHHH
Q 040540 648 TDAAA 652 (669)
Q Consensus 648 ~~v~~ 652 (669)
.|+++
T Consensus 288 ~ell~ 292 (313)
T 3cek_A 288 PELLA 292 (313)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 99986
No 315
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=99.87 E-value=5.8e-23 Score=214.46 Aligned_cols=197 Identities=20% Similarity=0.166 Sum_probs=139.1
Q ss_pred ccCchhhhhhccccccccceeccccccc-----cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP-----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
+.+..|+.++..++|||++++++++... ...++||||+. |+|.+++.. ..+++..+..|+.++++||+|||.
T Consensus 70 ~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~iv~e~~~-~~L~~~l~~--~~~~~~~~~~i~~qi~~aL~~LH~ 146 (364)
T 3qyz_A 70 QRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLME-TDLYKLLKT--QHLSNDHICYFLYQILRGLKYIHS 146 (364)
T ss_dssp HHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCS-EEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCccceeEEecCCccccceEEEEEcccC-cCHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566799999999999999999988654 35689999998 699999975 348999999999999999999995
Q ss_pred CCCCCCeeecCCCCcc----------------------------cccccccccccCccccccC-CCcCccccchhhHHHH
Q 040540 522 GHSSAPIIHCEGEDSV----------------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLL 572 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~----------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil 572 (669)
. +|+|+|+|+.. ......||+.|+|||++.+ ..++.++||||+||++
T Consensus 147 ~----~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il 222 (364)
T 3qyz_A 147 A----NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCIL 222 (364)
T ss_dssp T----TEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHH
T ss_pred C----CeecCCCChHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHH
Confidence 4 79999999531 0122368999999998655 4589999999999999
Q ss_pred HHHHhCCCCCCcCCCCCccHHHHHHHhCCCCcccccccc-----------cc--chhhhhhhhHHHHHHHHHHHhhcccC
Q 040540 573 METFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTN-----------LV--REEQAFSAKMDCLLSIMDLALDCCME 639 (669)
Q Consensus 573 ~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~l~~~c~~~ 639 (669)
|||+||+.||..... ......+.........+.+... .. ...+...........+.+++.+|++.
T Consensus 223 ~ell~g~~pf~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~ 300 (364)
T 3qyz_A 223 AEMLSNRPIFPGKHY--LDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTF 300 (364)
T ss_dssp HHHHHSSCSSCCSSG--GGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCS
T ss_pred HHHHHCCCCCCCCCh--HHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCC
Confidence 999999999976322 1121111111100000000000 00 00000000112345688999999999
Q ss_pred CCCCCCCHHHHHH
Q 040540 640 SPDKRMHMTDAAA 652 (669)
Q Consensus 640 ~P~~Rps~~~v~~ 652 (669)
||++|||+.|+++
T Consensus 301 dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 301 NPHKRIEVEQALA 313 (364)
T ss_dssp STTTSCCHHHHHT
T ss_pred ChhhCCCHHHHhc
Confidence 9999999999976
No 316
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=99.87 E-value=7.8e-23 Score=208.06 Aligned_cols=181 Identities=21% Similarity=0.255 Sum_probs=135.0
Q ss_pred ccCchhhhhhccccccccceeccccc--cccccceeeccCCCCChHHhhhc-CCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCS--NPDFKALVLEFMPNGSLEKWLYS-HNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~lv~ey~~~g~L~~~l~~-~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+..|+..+..++|+|++++++++. .....++||||++++ +.+++.. ....+++.....++.++++|++|||..
T Consensus 51 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~- 128 (305)
T 2wtk_C 51 ANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ- 128 (305)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEECC---CEEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHC-
Confidence 35678999999999999999999884 455779999999976 7777754 344689999999999999999999954
Q ss_pred CCCCeeecCCCCcc---------------------------cccccccccccCccccccCCC--cCccccchhhHHHHHH
Q 040540 524 SSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGI--VSAKCDVYSYGVLLME 574 (669)
Q Consensus 524 ~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~s~Gvil~e 574 (669)
+++|+|+++.. ......||+.|+|||+..+.. ++.++|||||||++||
T Consensus 129 ---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~ 205 (305)
T 2wtk_C 129 ---GIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYN 205 (305)
T ss_dssp ---TEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHH
T ss_pred ---CeeecCCCcccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHH
Confidence 79999998531 001234899999999987643 4789999999999999
Q ss_pred HHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 575 TFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 575 l~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|++|+.||.... ...+...+...... + +......+.+++.+||..||++|||+.|+++
T Consensus 206 l~~g~~p~~~~~--~~~~~~~i~~~~~~---------~---------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 263 (305)
T 2wtk_C 206 ITTGLYPFEGDN--IYKLFENIGKGSYA---------I---------PGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQ 263 (305)
T ss_dssp HHHSSCSCCCSS--HHHHHHHHHHCCCC---------C---------CSSSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred HHhCCCCCCCch--HHHHHHHHhcCCCC---------C---------CCccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 999999987521 11111111111100 0 1122345679999999999999999999986
No 317
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=99.87 E-value=8.9e-23 Score=219.90 Aligned_cols=126 Identities=20% Similarity=0.281 Sum_probs=103.4
Q ss_pred ccCchhhhhhccccccccceecccccc-----ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN-----PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~-----~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
+.+.+|+.++..++|+||+++++++.. ....++||||+. |+|.++++. ...+++.....|+.|+++||+|||.
T Consensus 97 ~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~-~~~l~~~~~~~~~~qi~~aL~~LH~ 174 (458)
T 3rp9_A 97 KRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIAD-SDFKKLFRT-PVYLTELHIKTLLYNLLVGVKYVHS 174 (458)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEECCCS-EEHHHHHHS-SCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceEEEEEeccc-cchhhhccc-CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 456689999999999999999998844 346799999985 799999975 4568999999999999999999995
Q ss_pred CCCCCCeeecCCCCcc----------------------------------------------------cccccccccccC
Q 040540 522 GHSSAPIIHCEGEDSV----------------------------------------------------TQTTTMATIGYM 549 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~----------------------------------------------------~~~~~~gt~~y~ 549 (669)
. +|+|||+|+.. ..+..+||+.|+
T Consensus 175 ~----~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~ 250 (458)
T 3rp9_A 175 A----GILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYR 250 (458)
T ss_dssp T----TCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC---------------------------CCCTTC
T ss_pred C----CcCCCCCChhhEEECCCCCEeecccccchhccCccccccccccCccccccccccccccccccccccCCccccccc
Confidence 4 79999999530 011235799999
Q ss_pred ccccc-cCCCcCccccchhhHHHHHHHHhC
Q 040540 550 APEYG-SEGIVSAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 550 aPE~~-~~~~~~~~~Dv~s~Gvil~el~tg 578 (669)
|||++ ....|+.++|||||||++|||+||
T Consensus 251 aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 251 APELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp CHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred ChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 99976 456699999999999999999994
No 318
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=215.61 Aligned_cols=200 Identities=17% Similarity=0.155 Sum_probs=135.5
Q ss_pred cCchhhhhhccccccccceeccccc--cccccceeeccCCCCChHHhhhcC--------CCccCHHHHHHHHHhHHhhhh
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCS--NPDFKALVLEFMPNGSLEKWLYSH--------NYFLDILERLNIMIDVGSALE 517 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~lv~ey~~~g~L~~~l~~~--------~~~l~~~~~~~i~~~i~~~l~ 517 (669)
.+.+|+.+++.++|||++++++++. .....++||||+. |+|.+++... ...+++..+..|+.+++.||+
T Consensus 64 ~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~ 142 (405)
T 3rgf_A 64 SACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIH 142 (405)
T ss_dssp HHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999984 4667899999997 5888888631 224889999999999999999
Q ss_pred hhhcCCCCCCeeecCCCCccc--------------------------------ccccccccccCccccccC-CCcCcccc
Q 040540 518 YLRHGHSSAPIIHCEGEDSVT--------------------------------QTTTMATIGYMAPEYGSE-GIVSAKCD 564 (669)
Q Consensus 518 ~lh~~~~~~~i~h~d~~~~~~--------------------------------~~~~~gt~~y~aPE~~~~-~~~~~~~D 564 (669)
|||.. +|+|||+|+... .....||+.|+|||++.+ ..++.++|
T Consensus 143 ~LH~~----~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~D 218 (405)
T 3rgf_A 143 YLHAN----WVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAID 218 (405)
T ss_dssp HHHHT----TCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHH
T ss_pred HHHhC----CEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhh
Confidence 99954 799999985310 012357999999999877 45899999
Q ss_pred chhhHHHHHHHHhCCCCCCcCCCCC--------ccHHHHHHHh-CCCC--ccccccc--------cccchhhhhhh----
Q 040540 565 VYSYGVLLMETFTRKRPTDEMFTGE--------MSLRRWVKES-LPHR--LSEVVDT--------NLVREEQAFSA---- 621 (669)
Q Consensus 565 v~s~Gvil~el~tg~~p~~~~~~~~--------~~l~~~~~~~-~~~~--~~~~~~~--------~~~~~~~~~~~---- 621 (669)
||||||++|||+||+.||.....+. ..+...+... .+.. +..+..- ...........
T Consensus 219 iwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (405)
T 3rgf_A 219 IWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKY 298 (405)
T ss_dssp HHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHH
T ss_pred hHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhh
Confidence 9999999999999999996532210 1111111111 1110 1100000 00000000000
Q ss_pred ----hHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 622 ----KMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 622 ----~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.......+.+++.+|++.||.+|||++|+++
T Consensus 299 ~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~ 333 (405)
T 3rgf_A 299 MEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQ 333 (405)
T ss_dssp HHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence 0001346789999999999999999999976
No 319
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=99.87 E-value=1.7e-22 Score=211.79 Aligned_cols=201 Identities=16% Similarity=0.185 Sum_probs=139.5
Q ss_pred cCchhhhhhcccc-----------ccccceecccccccc----ccceeeccCCCCChHHhhhcC-CCccCHHHHHHHHHh
Q 040540 448 SFDSECEVLRNVR-----------HRNLIKIISSCSNPD----FKALVLEFMPNGSLEKWLYSH-NYFLDILERLNIMID 511 (669)
Q Consensus 448 ~~~~e~~~l~~l~-----------h~niv~l~~~~~~~~----~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~i~~~ 511 (669)
.+..|+..+..+. |+|++++++++.... ..++||||+ +++|.+++... ...+++.....|+.+
T Consensus 61 ~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~q 139 (373)
T 1q8y_A 61 AAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQ 139 (373)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHH
Confidence 3456777776665 899999999887543 678999999 89999999763 345899999999999
Q ss_pred HHhhhhhhhcCCCCCCeeecCCCCccc----------------------------ccccccccccCccccccCCCcCccc
Q 040540 512 VGSALEYLRHGHSSAPIIHCEGEDSVT----------------------------QTTTMATIGYMAPEYGSEGIVSAKC 563 (669)
Q Consensus 512 i~~~l~~lh~~~~~~~i~h~d~~~~~~----------------------------~~~~~gt~~y~aPE~~~~~~~~~~~ 563 (669)
++.||+|||.. .+|+|+|+|+... .....||+.|+|||++.+..++.++
T Consensus 140 i~~aL~~lH~~---~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~ 216 (373)
T 1q8y_A 140 LLLGLDYMHRR---CGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGA 216 (373)
T ss_dssp HHHHHHHHHHT---TCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHH
T ss_pred HHHHHHHHHhc---CCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCCCCCCCCCCccccCcHHHhCCCCCchH
Confidence 99999999952 2799999995410 1223589999999999988899999
Q ss_pred cchhhHHHHHHHHhCCCCCCcCCCCC-----ccHHHHHHHh--CCCC-----------------cccccccccc---c-h
Q 040540 564 DVYSYGVLLMETFTRKRPTDEMFTGE-----MSLRRWVKES--LPHR-----------------LSEVVDTNLV---R-E 615 (669)
Q Consensus 564 Dv~s~Gvil~el~tg~~p~~~~~~~~-----~~l~~~~~~~--~~~~-----------------~~~~~~~~~~---~-~ 615 (669)
|||||||++|||+||+.||....... ..+...+... .|.. ...+...... . .
T Consensus 217 Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (373)
T 1q8y_A 217 DIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVL 296 (373)
T ss_dssp HHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhh
Confidence 99999999999999999997532111 1111111100 0000 0000000000 0 0
Q ss_pred hhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 616 EQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 616 ~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
......+......+.+++.+||+.||++|||++|+++
T Consensus 297 ~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 333 (373)
T 1q8y_A 297 TEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN 333 (373)
T ss_dssp HHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred hhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhh
Confidence 0111223567788999999999999999999999976
No 320
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=99.87 E-value=9.3e-23 Score=213.32 Aligned_cols=197 Identities=18% Similarity=0.164 Sum_probs=139.2
Q ss_pred ccCchhhhhhccccccccceecccccccccc------ceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFK------ALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~------~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
+.+..|+..+..++|||++++++++...... ++||||+. ++|.+++.. .+++..+..++.++++|++|||
T Consensus 86 ~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~aL~~LH 161 (371)
T 4exu_A 86 KRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMGM---EFSEEKIQYLVYQMLKGLKYIH 161 (371)
T ss_dssp HHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCCEEEEECCC-EEHHHHTTS---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeEEEEEcccc-ccHHHHhhc---CCCHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999998776544 89999998 689888853 3899999999999999999999
Q ss_pred cCCCCCCeeecCCCCcc----------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHh
Q 040540 521 HGHSSAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~t 577 (669)
.. +|+|+|+|+.. ......||+.|+|||++.+ ..++.++||||+||++|||+|
T Consensus 162 ~~----~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~ 237 (371)
T 4exu_A 162 SA----GVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLT 237 (371)
T ss_dssp HT----TCCCSCCCGGGEEECTTCCEEECSTTCC--------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHH
T ss_pred HC----CCcCCCcCHHHeEECCCCCEEEEecCcccccccCcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHh
Confidence 54 79999999541 1122358999999999877 678999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhC-CC-Ccccccccc--------ccc-hh-hhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESL-PH-RLSEVVDTN--------LVR-EE-QAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~-~~-~~~~~~~~~--------~~~-~~-~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
|+.||...... ..+...+...- +. .....+... +.. .. ............+.+++.+|++.||++||
T Consensus 238 g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp 316 (371)
T 4exu_A 238 GKTLFKGKDYL-DQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRL 316 (371)
T ss_dssp SSCSCCCSSHH-HHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSC
T ss_pred CCCCCCCCChH-HHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcC
Confidence 99999753211 11111111110 00 000000000 000 00 00001123356788999999999999999
Q ss_pred CHHHHHH
Q 040540 646 HMTDAAA 652 (669)
Q Consensus 646 s~~~v~~ 652 (669)
|+.|+++
T Consensus 317 t~~ell~ 323 (371)
T 4exu_A 317 TAAQALT 323 (371)
T ss_dssp CHHHHHT
T ss_pred CHHHHhc
Confidence 9999976
No 321
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=2.7e-22 Score=218.65 Aligned_cols=215 Identities=22% Similarity=0.325 Sum_probs=145.4
Q ss_pred cccCCCCCCCCCC-----Cccce-eeCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCC
Q 040540 27 ALANNWSISYPIC-----SWAGI-SCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRR 100 (669)
Q Consensus 27 ~l~~~w~~~~~~c-----~~~g~-~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 100 (669)
.+.. |.....+| .|.++ .|.. .+++.|++++|++++ +|..+ +++|++|+|++|.++ .+| ..+++
T Consensus 32 ~l~~-W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~ 101 (571)
T 3cvr_A 32 AWDK-WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPAS 101 (571)
T ss_dssp HHHH-HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTT
T ss_pred HHHH-HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCC
Confidence 3444 76666778 68888 6754 479999999999987 77655 378999999999998 566 45789
Q ss_pred CCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEccc
Q 040540 101 LRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWS 180 (669)
Q Consensus 101 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~ 180 (669)
|++|+|++|++++ +|. +.+ +|++|+|++|++++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++
T Consensus 102 L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 102 LEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCC
Confidence 9999999999986 776 665 89999999999986 555 57788888888888775 554 466777777777
Q ss_pred CCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccC
Q 040540 181 CNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKI 260 (669)
Q Consensus 181 n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~ 260 (669)
|.+++ +|. |. ++|+.|+|++|.++ .+|. +.. +| ....+.|++|+|++|+++ .+
T Consensus 170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L------------------~~~~~~L~~L~Ls~N~l~-~l 222 (571)
T 3cvr_A 170 NQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RN------------------HHSEETEIFFRCRENRIT-HI 222 (571)
T ss_dssp SCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------------------------CCEEEECCSSCCC-CC
T ss_pred CCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hh------------------hcccccceEEecCCCcce-ec
Confidence 77765 555 54 67777777777776 3444 332 33 001112255555555544 24
Q ss_pred CccccCCCCCCEEeCCCCCccccCccccCC
Q 040540 261 PNSITNATKLIGLDLGFNSFSGHIPNTFGN 290 (669)
Q Consensus 261 p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 290 (669)
|..+..+++|+.|++++|.+++.+|..+..
T Consensus 223 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 223 PENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred CHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 444444555555555555555555554443
No 322
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3e-21 Score=190.27 Aligned_cols=177 Identities=20% Similarity=0.229 Sum_probs=117.8
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecc
Q 040540 76 FLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAE 155 (669)
Q Consensus 76 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (669)
..++++++++.++ .+|..+. +.|+.|+|++|.+.+..|..|.++++|++|+|++|.+++..|..+.++++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4567888888887 4565554 578888888888887777778888888888888888887767677777777777777
Q ss_pred cccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCcccc
Q 040540 156 FNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRL 235 (669)
Q Consensus 156 ~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 235 (669)
+|.+++..+..+..+++|++|++++|++++..+..|..+++|++|+|++|.+++..+..+..+++|++|++++|.+++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 77777666666677777777777777776655555666677777777777766555545555555555555555554222
Q ss_pred chhhhccCCCCCeeecccCcc
Q 040540 236 PSTIGHSLRNIEYLALSTNNL 256 (669)
Q Consensus 236 p~~~~~~l~~L~~L~ls~n~l 256 (669)
+..+ ..+++|++|++++|.+
T Consensus 172 ~~~~-~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 172 HGAF-DRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTT-TTCTTCCEEECCSCCB
T ss_pred HHHH-hCCCCCCEEEeeCCce
Confidence 2222 2344444444444443
No 323
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=99.87 E-value=1.1e-22 Score=211.80 Aligned_cols=198 Identities=17% Similarity=0.195 Sum_probs=139.7
Q ss_pred cCchhhhhhccccccc------cceeccccccccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhh
Q 040540 448 SFDSECEVLRNVRHRN------LIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~n------iv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
.+..|+..+..++|++ ++.+++++......++||||+ ++++.+++.... ..+++..+..++.|+++||+|||
T Consensus 62 ~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH 140 (355)
T 2eu9_A 62 AARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH 140 (355)
T ss_dssp HHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4556888888888776 788888888888899999999 567777776543 46899999999999999999999
Q ss_pred cCCCCCCeeecCCCCccc-----------------------------------------ccccccccccCccccccCCCc
Q 040540 521 HGHSSAPIIHCEGEDSVT-----------------------------------------QTTTMATIGYMAPEYGSEGIV 559 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~~-----------------------------------------~~~~~gt~~y~aPE~~~~~~~ 559 (669)
. .+|+|+|+|+... .....||+.|+|||++.+..+
T Consensus 141 ~----~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~ 216 (355)
T 2eu9_A 141 E----NQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGW 216 (355)
T ss_dssp T----TTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCC
T ss_pred H----CCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCccccccccccCCcCCCcccCCeeeecCCC
Confidence 4 4899999985411 112358999999999998889
Q ss_pred CccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhC---CCCc------ccc-------cccccc----------
Q 040540 560 SAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESL---PHRL------SEV-------VDTNLV---------- 613 (669)
Q Consensus 560 ~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~---~~~~------~~~-------~~~~~~---------- 613 (669)
+.++|||||||++|||+||+.||..... ......+.... |... ... .+....
T Consensus 217 ~~~~Di~slG~il~el~~g~~pf~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (355)
T 2eu9_A 217 AQPCDVWSIGCILFEYYRGFTLFQTHEN--REHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCK 294 (355)
T ss_dssp CTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCC
T ss_pred CCccchHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCC
Confidence 9999999999999999999999975321 11111111111 1000 000 000000
Q ss_pred chhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 614 REEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
...............+.+++.+||+.||++|||+.|+++
T Consensus 295 ~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 333 (355)
T 2eu9_A 295 PLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALL 333 (355)
T ss_dssp CGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred cccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence 000000112234567889999999999999999999974
No 324
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=99.87 E-value=1.6e-22 Score=215.77 Aligned_cols=131 Identities=19% Similarity=0.228 Sum_probs=108.7
Q ss_pred ccCchhhhhhccccccccceeccccccc-----cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNP-----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
+.+.+|+.++..++|+|++++++++... ...++||||+. |+|.++++. ...+++.....++.|+++||+|||.
T Consensus 70 ~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~-~~~l~~~~~~~i~~qil~aL~~LH~ 147 (432)
T 3n9x_A 70 KRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIAD-SDLKKLFKT-PIFLTEEHIKTILYNLLLGENFIHE 147 (432)
T ss_dssp HHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEECCS-EEHHHHHHS-SCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeEEEEEecCC-cCHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566899999999999999999998765 46799999997 699999975 4568999999999999999999995
Q ss_pred CCCCCCeeecCCCCcc-----------------------------------------------cccccccccccCccccc
Q 040540 522 GHSSAPIIHCEGEDSV-----------------------------------------------TQTTTMATIGYMAPEYG 554 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~-----------------------------------------------~~~~~~gt~~y~aPE~~ 554 (669)
. +|+|||+|+.. ..+..+||+.|+|||++
T Consensus 148 ~----givHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~ 223 (432)
T 3n9x_A 148 S----GIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELI 223 (432)
T ss_dssp T----TEECCCCCGGGEEECTTCCEEECCCTTCEEC-------------------------------CCCCCTTCCHHHH
T ss_pred C----CCCCCCCCHHHeEECCCCCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHH
Confidence 4 79999999530 01334689999999985
Q ss_pred -cCCCcCccccchhhHHHHHHHHhCCCCCC
Q 040540 555 -SEGIVSAKCDVYSYGVLLMETFTRKRPTD 583 (669)
Q Consensus 555 -~~~~~~~~~Dv~s~Gvil~el~tg~~p~~ 583 (669)
....|+.++||||+||++|||++|..|+.
T Consensus 224 ~~~~~~~~~~DiwSlG~il~ell~g~~p~~ 253 (432)
T 3n9x_A 224 LLQENYTKSIDIWSTGCIFAELLNMLQSHI 253 (432)
T ss_dssp TTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred hcCCCCCcccccchHHHHHHHHHhcccccc
Confidence 45669999999999999999998766553
No 325
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=99.87 E-value=1.4e-22 Score=222.40 Aligned_cols=196 Identities=19% Similarity=0.211 Sum_probs=138.4
Q ss_pred ccCchhhhhhccccccccceecccccc------ccccceeeccCCCCChHHhhhcCC--CccCHHHHHHHHHhHHhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN------PDFKALVLEFMPNGSLEKWLYSHN--YFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~------~~~~~lv~ey~~~g~L~~~l~~~~--~~l~~~~~~~i~~~i~~~l~~ 518 (669)
+.+..|+.++..++|||++++++++.. ....++||||+++|+|.+++.... ..+++..+..|+.++++|++|
T Consensus 57 ~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~y 136 (676)
T 3qa8_A 57 ERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRY 136 (676)
T ss_dssp HHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHH
Confidence 356779999999999999999988755 667789999999999999998633 257888899999999999999
Q ss_pred hhcCCCCCCeeecCCCCcc---------------------------cccccccccccCccccccCCCcCccccchhhHHH
Q 040540 519 LRHGHSSAPIIHCEGEDSV---------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVL 571 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~---------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvi 571 (669)
||. .+++|+|+++.. ......||+.|+|||++.+..++.++|||||||+
T Consensus 137 LHs----~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGvi 212 (676)
T 3qa8_A 137 LHE----NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTL 212 (676)
T ss_dssp HHH----TTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHH
T ss_pred HHH----CCCccCCCCHHHeEeecCCCceeEEEcccccccccccccccccccCCcccCChHHhccCCCCchhHHHHHHHH
Confidence 995 479999998531 0112358999999999998899999999999999
Q ss_pred HHHHHhCCCCCCcCCCCCccHHHHHHHhCCC-----Ccccccccccc--ch-hhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 040540 572 LMETFTRKRPTDEMFTGEMSLRRWVKESLPH-----RLSEVVDTNLV--RE-EQAFSAKMDCLLSIMDLALDCCMESPDK 643 (669)
Q Consensus 572 l~el~tg~~p~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~l~~~c~~~~P~~ 643 (669)
+|||+||+.||.... ....|....... ...+....... .. .............+.+++.+|+..||++
T Consensus 213 LyeLltG~~Pf~~~~----~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~k 288 (676)
T 3qa8_A 213 AFECITGFRPFLPNW----QPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQ 288 (676)
T ss_dssp HHHHHSSCSSCCSSC----HHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC-
T ss_pred HHHHHHCCCCCCccc----chhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhh
Confidence 999999999986421 111111100000 00000000000 00 0000112345667899999999999999
Q ss_pred CCCHHHH
Q 040540 644 RMHMTDA 650 (669)
Q Consensus 644 Rps~~~v 650 (669)
|||+.|+
T Consensus 289 RPTa~el 295 (676)
T 3qa8_A 289 RGTDPQN 295 (676)
T ss_dssp --CCTTC
T ss_pred CcCHHHH
Confidence 9999884
No 326
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=99.87 E-value=9e-23 Score=209.06 Aligned_cols=197 Identities=16% Similarity=0.179 Sum_probs=138.6
Q ss_pred ccCchhhhhhccccccccceeccccc--------------cccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCS--------------NPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDV 512 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~--------------~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i 512 (669)
+.+..|+.++..++|||++++++++. .....++||||++ |+|.+++.. ..+++.....++.++
T Consensus 53 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~--~~~~~~~~~~~~~qi 129 (320)
T 2i6l_A 53 KHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYME-TDLANVLEQ--GPLLEEHARLFMYQL 129 (320)
T ss_dssp HHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----CCSCSEEEEEEECCS-EEHHHHHTT--CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccccccCceeEEeeccC-CCHHHHhhc--CCccHHHHHHHHHHH
Confidence 45668999999999999999988763 3456789999998 699999964 458889999999999
Q ss_pred HhhhhhhhcCCCCCCeeecCCCCccc-----------------------------ccccccccccCccccccC-CCcCcc
Q 040540 513 GSALEYLRHGHSSAPIIHCEGEDSVT-----------------------------QTTTMATIGYMAPEYGSE-GIVSAK 562 (669)
Q Consensus 513 ~~~l~~lh~~~~~~~i~h~d~~~~~~-----------------------------~~~~~gt~~y~aPE~~~~-~~~~~~ 562 (669)
++|++|||.. +++|+|+|+... .....||..|+|||...+ ..++.+
T Consensus 130 ~~~l~~lH~~----~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~ 205 (320)
T 2i6l_A 130 LRGLKYIHSA----NVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKA 205 (320)
T ss_dssp HHHHHHHHHT----TCBCCCCSGGGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHH
T ss_pred HHHHHHHHhC----CEecCCCCHHHEEEcCCCCeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCch
Confidence 9999999954 799999985310 011236888999998765 678999
Q ss_pred ccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccc-----------cccccccch-hhhhhhhHHHHHHHH
Q 040540 563 CDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSE-----------VVDTNLVRE-EQAFSAKMDCLLSIM 630 (669)
Q Consensus 563 ~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~~~~~~~ 630 (669)
+|||||||++|||+||+.||..... ......+....+..... .+....... .+...........+.
T Consensus 206 ~Di~slG~il~el~~g~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (320)
T 2i6l_A 206 IDMWAAGCIFAEMLTGKTLFAGAHE--LEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAV 283 (320)
T ss_dssp HHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHH
T ss_pred hhhHhHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHH
Confidence 9999999999999999999975321 11112122221110000 000000000 000000123456788
Q ss_pred HHHhhcccCCCCCCCCHHHHHH
Q 040540 631 DLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 631 ~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+++.+|++.||++|||+.|+++
T Consensus 284 ~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 284 DFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp HHHHTTSCSSGGGSCCHHHHHT
T ss_pred HHHHHHcCCCccccCCHHHHhC
Confidence 9999999999999999999976
No 327
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=99.86 E-value=8.2e-23 Score=207.58 Aligned_cols=184 Identities=17% Similarity=0.209 Sum_probs=133.4
Q ss_pred ccCchhhhhhccccccccceecccccc-------------ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHH
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSN-------------PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVG 513 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~-------------~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~ 513 (669)
+.+..|+..+..++|||++++++++.. ....++||||+++|+|.+++......+++.....++.+++
T Consensus 47 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~ 126 (303)
T 1zy4_A 47 STILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQIL 126 (303)
T ss_dssp HHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC------CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHH
Confidence 456679999999999999999987643 4567899999999999999987666788889999999999
Q ss_pred hhhhhhhcCCCCCCeeecCCCCcc-----------------c----------------------ccccccccccCccccc
Q 040540 514 SALEYLRHGHSSAPIIHCEGEDSV-----------------T----------------------QTTTMATIGYMAPEYG 554 (669)
Q Consensus 514 ~~l~~lh~~~~~~~i~h~d~~~~~-----------------~----------------------~~~~~gt~~y~aPE~~ 554 (669)
+|++|||.. +++|+|+++.. . .....||+.|+|||++
T Consensus 127 ~~l~~LH~~----~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~ 202 (303)
T 1zy4_A 127 EALSYIHSQ----GIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVL 202 (303)
T ss_dssp HHHHHHHHT----TCCCSCCCGGGEEECTTSCEEECCCCCCSCTTC-------------------------CTTSCHHHH
T ss_pred HHHHHHHhC----CeecccCCHHhEEEcCCCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccc
Confidence 999999954 79999998431 0 0122488999999998
Q ss_pred cCC-CcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHH
Q 040540 555 SEG-IVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLA 633 (669)
Q Consensus 555 ~~~-~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 633 (669)
.+. .++.++|||||||++|||++ |+.... +.......+..... .. .+.. +...+..+.+++
T Consensus 203 ~~~~~~~~~~Di~slG~il~~l~~---p~~~~~-~~~~~~~~~~~~~~-~~----~~~~---------~~~~~~~~~~li 264 (303)
T 1zy4_A 203 DGTGHYNEKIDMYSLGIIFFEMIY---PFSTGM-ERVNILKKLRSVSI-EF----PPDF---------DDNKMKVEKKII 264 (303)
T ss_dssp TSCSCCCTHHHHHHHHHHHHHHHS---CCSSHH-HHHHHHHHHHSTTC-CC----CTTC---------CTTTSHHHHHHH
T ss_pred cCCCCCcchhhHHHHHHHHHHHHh---ccCCch-hHHHHHHhcccccc-cc----Cccc---------cccchHHHHHHH
Confidence 764 68999999999999999998 443210 11111111111100 00 0111 122334578999
Q ss_pred hhcccCCCCCCCCHHHHHH
Q 040540 634 LDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 634 ~~c~~~~P~~Rps~~~v~~ 652 (669)
.+||+.||++|||+.|+++
T Consensus 265 ~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 265 RLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp HHHTCSSGGGSCCHHHHHH
T ss_pred HHHHhcCcccCcCHHHHhC
Confidence 9999999999999999987
No 328
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=99.86 E-value=5.3e-23 Score=210.62 Aligned_cols=181 Identities=19% Similarity=0.183 Sum_probs=128.7
Q ss_pred hhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeec
Q 040540 452 ECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHC 531 (669)
Q Consensus 452 e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~ 531 (669)
+...+...+|||++++++++......++||||+ ++.+..+.......+++.....++.++++|+.|||.. .+++|+
T Consensus 74 ~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~~i~H~ 149 (318)
T 2dyl_A 74 LDVVLKSHDCPYIVQCFGTFITNTDVFIAMELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEK---HGVIHR 149 (318)
T ss_dssp HHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH---HCCCCC
T ss_pred HHHHHHhcCCCceeeEEEEEecCCcEEEEEecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhh---CCEEeC
Confidence 344567779999999999999988999999999 4555555544455689999999999999999999952 269999
Q ss_pred CCCCcc------------------------cccccccccccCcccccc-----CCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 532 EGEDSV------------------------TQTTTMATIGYMAPEYGS-----EGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 532 d~~~~~------------------------~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
|+++.. ......||+.|+|||++. ...++.++|||||||++|||++|+.||
T Consensus 150 dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf 229 (318)
T 2dyl_A 150 DVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPY 229 (318)
T ss_dssp CCCGGGEEECTTSCEEECCCTTC--------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CCCHHHEEECCCCCEEEEECCCchhccCCccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCC
Confidence 998531 011235899999999984 456889999999999999999999999
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
.........+..... ..+.... ........+.+++.+||+.||.+||++.|+++
T Consensus 230 ~~~~~~~~~~~~~~~-~~~~~~~---------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 230 KNCKTDFEVLTKVLQ-EEPPLLP---------------GHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp TTCCSHHHHHHHHHH-SCCCCCC---------------SSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCCCccHHHHHHHhc-cCCCCCC---------------ccCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 753221111111111 1111100 01112345789999999999999999999976
No 329
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=99.86 E-value=2.2e-22 Score=209.32 Aligned_cols=197 Identities=20% Similarity=0.158 Sum_probs=138.2
Q ss_pred cCchhhhhhccccccccceeccccccc-----cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNP-----DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
.+..|+.++..++|+|++++++++... ...++||||+. |+|.+++.. ..+++..+..++.++++||+|||.
T Consensus 55 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH~- 130 (353)
T 2b9h_A 55 RTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELMQ-TDLHRVIST--QMLSDDHIQYFIYQTLRAVKVLHG- 130 (353)
T ss_dssp HHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEEEEECCCS-EEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCcCCCcCCeeeeecccccCccceEEEEEeccC-ccHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 456789999999999999999887653 56789999998 699999975 358999999999999999999995
Q ss_pred CCCCCeeecCCCCccc-----------------------------------ccccccccccCccccccC-CCcCccccch
Q 040540 523 HSSAPIIHCEGEDSVT-----------------------------------QTTTMATIGYMAPEYGSE-GIVSAKCDVY 566 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~~-----------------------------------~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~ 566 (669)
.+++|+|+|+... .....||+.|+|||++.. ..++.++|||
T Consensus 131 ---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~ 207 (353)
T 2b9h_A 131 ---SNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVW 207 (353)
T ss_dssp ---TTEECSCCCGGGEEECTTCCEEECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHH
T ss_pred ---CCeecCCCCHHHeEEcCCCcEEEEecccccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHH
Confidence 4799999985310 011257999999998754 6789999999
Q ss_pred hhHHHHHHHHhCCCCCCcCCCCCccHHHHHHH-hCCCC--cccccc-c-------cccc--hhhhhhhhHHHHHHHHHHH
Q 040540 567 SYGVLLMETFTRKRPTDEMFTGEMSLRRWVKE-SLPHR--LSEVVD-T-------NLVR--EEQAFSAKMDCLLSIMDLA 633 (669)
Q Consensus 567 s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~-~~~~~--~~~~~~-~-------~~~~--~~~~~~~~~~~~~~~~~l~ 633 (669)
||||++|||++|+.||...... ..+...... ..+.. ....+. . .+.. ..............+.+++
T Consensus 208 slG~il~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 286 (353)
T 2b9h_A 208 SCGCILAELFLRRPIFPGRDYR-HQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLL 286 (353)
T ss_dssp HHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCcH-HHHHHHHHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHH
Confidence 9999999999999999753211 111111111 00100 000000 0 0000 0000001123456778999
Q ss_pred hhcccCCCCCCCCHHHHHH
Q 040540 634 LDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 634 ~~c~~~~P~~Rps~~~v~~ 652 (669)
.+||+.||++|||+.|+++
T Consensus 287 ~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 287 QRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp HHHSCSSGGGSCCHHHHHT
T ss_pred HHhcCcCcccCCCHHHHhc
Confidence 9999999999999999976
No 330
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.7e-23 Score=220.44 Aligned_cols=234 Identities=19% Similarity=0.227 Sum_probs=181.8
Q ss_pred CCEEEEEcCCCCCccccc----ccccCCCCCCEEeCCCC---cCcccCCccc-------CCCCCCCEEEccCCcCCc---
Q 040540 51 QRVTALNLSDMGLGGTIP----LHFGNLSFLVSLDISEN---NFHGHLPKEL-------GQLRRLRVMSLAYNKLSG--- 113 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~----~~~~~l~~L~~L~Ls~N---~l~~~~p~~l-------~~l~~L~~L~L~~n~l~~--- 113 (669)
..++.|+|++|.+++..+ ..+..+++|++|+|++| ++.+.+|..+ ..+++|++|+|++|.+.+
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 468999999999987643 45789999999999996 4556666655 789999999999999987
Q ss_pred -cCCccccCCcccccccccccCccccCCcccC----CC---------CCCCeeeccccccc-ccCC---cccCCCCCCCE
Q 040540 114 -SFPSWIGVLSKLRILRLDYNNFTGPIPNSLF----NL---------SRLEMLRAEFNIIG-GTIP---SRIGNLRKLVN 175 (669)
Q Consensus 114 -~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~l~~n~l~-~~~p---~~~~~L~~L~~ 175 (669)
.+|..+..+++|++|+|++|.++...+..+. .+ ++|++|++++|.++ +.+| ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 4788899999999999999999755444443 34 89999999999997 4455 46778999999
Q ss_pred EEcccCCCcc-----cCCccccCCCCCCEEEccCCCCC----CCCCccccCCCCCcEEEcccCCCccc----cchhhh-c
Q 040540 176 LGLWSCNLQG-----QIPTEIGSLQNLKNLDLADNKLS----GLIPPTIFNISTMRILTLESNQLSGR----LPSTIG-H 241 (669)
Q Consensus 176 L~l~~n~l~~-----~~p~~~~~l~~L~~L~l~~N~l~----~~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~-~ 241 (669)
|++++|.++. ..|..+..+++|++|+|++|.++ +.+|..+..+++|++|++++|.+++. ++..+. .
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 9999999973 34557889999999999999996 56777888888999999999988754 344432 1
Q ss_pred cCCCCCeeecccCcccc----cCCccc-cCCCCCCEEeCCCCCccccC
Q 040540 242 SLRNIEYLALSTNNLIG----KIPNSI-TNATKLIGLDLGFNSFSGHI 284 (669)
Q Consensus 242 ~l~~L~~L~ls~n~l~~----~~p~~~-~~l~~L~~L~ls~n~l~~~~ 284 (669)
.+++|++|+|++|.+.+ .+|..+ .++++|+.|++++|.+.+..
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 25677777777777765 355544 44566666666666665444
No 331
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.8e-22 Score=206.09 Aligned_cols=175 Identities=19% Similarity=0.206 Sum_probs=134.1
Q ss_pred ccCchhhhhhccc----cccccceeccccccccccceeecc-CCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNV----RHRNLIKIISSCSNPDFKALVLEF-MPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l----~h~niv~l~~~~~~~~~~~lv~ey-~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
..+..|+..+.++ +|+|++++++++...+..++|||| +++++|.+++.+. ..+++..+..++.++++||+|||.
T Consensus 79 ~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~ 157 (312)
T 2iwi_A 79 VTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEK-GPLGEGPSRCFFGQVVAAIQHCHS 157 (312)
T ss_dssp CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-----CEEEEECCSSEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCCCeeeEEEEEecCCeEEEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888 899999999999888889999999 7899999999863 458999999999999999999995
Q ss_pred CCCCCCeeecCCCCcc------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHH
Q 040540 522 GHSSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETF 576 (669)
Q Consensus 522 ~~~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~ 576 (669)
. +++|+|+++.. ......||..|+|||++.+..+ +.++|||||||++|||+
T Consensus 158 ~----~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~ 233 (312)
T 2iwi_A 158 R----GVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMV 233 (312)
T ss_dssp H----TEECCCCSGGGEEEETTTTEEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHH
T ss_pred C----CeeecCCChhhEEEeCCCCeEEEEEcchhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHH
Confidence 4 79999998431 1122348899999998877665 45999999999999999
Q ss_pred hCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 577 TRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 577 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+|+.||... ........ . + +......+.+++.+||+.||++|||+.|+++
T Consensus 234 ~g~~pf~~~-------~~~~~~~~--~--------~---------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 234 CGDIPFERD-------QEILEAEL--H--------F---------PAHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp HSSCSCCSH-------HHHHHTCC--C--------C---------CTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred HCCCCCCCh-------HHHhhhcc--C--------C---------cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 999998642 11111000 0 0 1122345789999999999999999999986
No 332
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=2.9e-23 Score=216.46 Aligned_cols=269 Identities=16% Similarity=0.175 Sum_probs=165.6
Q ss_pred EEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCC----ccccCCc-ccccccccccCccccCCcccCCC-----CC
Q 040540 79 SLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFP----SWIGVLS-KLRILRLDYNNFTGPIPNSLFNL-----SR 148 (669)
Q Consensus 79 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~ 148 (669)
.+++++|.+++.+|..+...++|++|+|++|.+.+..+ +.+.+++ +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45778888888777777777778888888888876555 6667777 78888888887776555555443 55
Q ss_pred CCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCC-CCCCEEEccCCCCCCCCCcccc----C-CCCCc
Q 040540 149 LEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSL-QNLKNLDLADNKLSGLIPPTIF----N-ISTMR 222 (669)
Q Consensus 149 L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p~~~~----~-l~~L~ 222 (669)
|++|++++|.+++..+..+... +..+ ++|++|++++|.+++..+..+. . .++|+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKT--------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred ccEEECcCCcCChHHHHHHHHH--------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence 5555555555554443322221 1122 4455555555555443333322 1 13555
Q ss_pred EEEcccCCCccc----cchhhhccCC-CCCeeecccCcccccCCccc----cCC-CCCCEEeCCCCCcccc----Ccccc
Q 040540 223 ILTLESNQLSGR----LPSTIGHSLR-NIEYLALSTNNLIGKIPNSI----TNA-TKLIGLDLGFNSFSGH----IPNTF 288 (669)
Q Consensus 223 ~L~l~~n~l~~~----~p~~~~~~l~-~L~~L~ls~n~l~~~~p~~~----~~l-~~L~~L~ls~n~l~~~----~p~~~ 288 (669)
+|++++|.+++. ++..+. .++ +|++|++++|++.+..+..+ ... ++|+.|++++|.+... ++..+
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 220 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF 220 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred EEEccCCcCCHHHHHHHHHHHh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence 555555555432 222222 233 67777777777665554433 333 5788888888888753 44455
Q ss_pred CC-CCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhh---hccccccceEeecCccc
Q 040540 289 GN-LRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNF---SASLQNIYAFELGFNDL 364 (669)
Q Consensus 289 ~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~~l~~l~~l~l~~n~l 364 (669)
.. .++|+.|++++|.+++.... .+...+..+++|+.|++++|.+.+..+...... ...++.|+.+++++|.+
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPSLE----NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCCHH----HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred hcCCCCceEEECcCCCCCcHHHH----HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 54 46999999999998765210 112334677899999999998665554433322 23467788999999998
Q ss_pred CCCCCccc
Q 040540 365 NGTIPTSI 372 (669)
Q Consensus 365 ~~~~~~~~ 372 (669)
....+..+
T Consensus 297 ~~~~~~~~ 304 (362)
T 3goz_A 297 HPSHSIPI 304 (362)
T ss_dssp CGGGCHHH
T ss_pred CCcchHHH
Confidence 87644443
No 333
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=4.2e-23 Score=213.12 Aligned_cols=255 Identities=18% Similarity=0.220 Sum_probs=159.6
Q ss_pred CCEEeCCCCcCcccCCcccCCC--CCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeec
Q 040540 77 LVSLDISENNFHGHLPKELGQL--RRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRA 154 (669)
Q Consensus 77 L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 154 (669)
++.||+++|.+. |..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.+++.
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~---------------- 108 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS---------------- 108 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH----------------
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH----------------
Confidence 566677766654 3344444 5666666666666554443 33456666666666555433
Q ss_pred ccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCC-CCCC-CCCccccCCCCCcEEEcccC-CC
Q 040540 155 EFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADN-KLSG-LIPPTIFNISTMRILTLESN-QL 231 (669)
Q Consensus 155 ~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N-~l~~-~~p~~~~~l~~L~~L~l~~n-~l 231 (669)
.+|..+..+++|++|++++|.+++..|..++.+++|++|++++| .+++ .++..+.++++|++|++++| .+
T Consensus 109 -------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 109 -------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp -------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred -------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 03344444455555555555555445555555555555555555 3443 13444555666666666666 55
Q ss_pred ccc-cchhhhccCC-CCCeeecccC--ccc-ccCCccccCCCCCCEEeCCCCC-ccccCccccCCCCCCCEEEccCCc-c
Q 040540 232 SGR-LPSTIGHSLR-NIEYLALSTN--NLI-GKIPNSITNATKLIGLDLGFNS-FSGHIPNTFGNLRHLSVLNVMMNN-L 304 (669)
Q Consensus 232 ~~~-~p~~~~~~l~-~L~~L~ls~n--~l~-~~~p~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~l~~N~-l 304 (669)
++. ++..+. .++ +|++|++++| .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +
T Consensus 182 ~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 182 TEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred ChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 543 344343 567 7888888877 344 3456667788999999999999 777777889999999999999985 2
Q ss_pred ccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccc
Q 040540 305 TTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGT 374 (669)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~ 374 (669)
... .+..+..+++|+.|++++| +... .+..+. ..+..+++++|.+++..|..++.
T Consensus 261 ~~~--------~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~---~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 261 IPE--------TLLELGEIPTLKTLQVFGI-VPDG---TLQLLK---EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CGG--------GGGGGGGCTTCCEEECTTS-SCTT---CHHHHH---HHSTTSEESCCCSCCTTCSSCSS
T ss_pred CHH--------HHHHHhcCCCCCEEeccCc-cCHH---HHHHHH---hhCcceEEecccCccccCCcccc
Confidence 111 1234677999999999998 3322 222221 23566778999999988887764
No 334
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=99.86 E-value=1e-22 Score=208.53 Aligned_cols=175 Identities=17% Similarity=0.178 Sum_probs=138.0
Q ss_pred ccCchhhhhhcccc--ccccceeccccccccccceeeccCCC-CChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCC
Q 040540 447 RSFDSECEVLRNVR--HRNLIKIISSCSNPDFKALVLEFMPN-GSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGH 523 (669)
Q Consensus 447 ~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~lv~ey~~~-g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~ 523 (669)
+.+..|+.++..++ |+|++++++++..++..++||||+.+ ++|.+++... ..+++..+..++.++++||+|||.
T Consensus 91 ~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~~L~~~l~~~-~~l~~~~~~~i~~qi~~~L~~LH~-- 167 (320)
T 3a99_A 91 TRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITER-GALQEELARSFFWQVLEAVRHCHN-- 167 (320)
T ss_dssp CEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHhhccCCCCceEEEEEEecCCcEEEEEEcCCCCccHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHH--
Confidence 35667888998886 59999999999998899999999976 8999999753 458999999999999999999995
Q ss_pred CCCCeeecCCCCcc------------------------cccccccccccCccccccCCCc-CccccchhhHHHHHHHHhC
Q 040540 524 SSAPIIHCEGEDSV------------------------TQTTTMATIGYMAPEYGSEGIV-SAKCDVYSYGVLLMETFTR 578 (669)
Q Consensus 524 ~~~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~s~Gvil~el~tg 578 (669)
.+++|+|+|+.. ......||+.|+|||++.+..+ +.++|||||||++|||+||
T Consensus 168 --~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g 245 (320)
T 3a99_A 168 --CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCG 245 (320)
T ss_dssp --TTEECCCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHS
T ss_pred --CCcEeCCCCHHHEEEeCCCCCEEEeeCccccccccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHC
Confidence 479999998531 0112358999999999877665 7889999999999999999
Q ss_pred CCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 579 KRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 579 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
+.||.... ....... .. +......+.+++.+||+.||++|||+.|+++
T Consensus 246 ~~pf~~~~-------~~~~~~~------~~-------------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 246 DIPFEHDE-------EIIRGQV------FF-------------RQRVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp SCSCCSHH-------HHHHCCC------CC-------------SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCCChh-------hhhcccc------cc-------------cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 99986421 1111100 00 0112345789999999999999999999986
No 335
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=99.86 E-value=5.3e-22 Score=206.99 Aligned_cols=200 Identities=14% Similarity=0.093 Sum_probs=135.0
Q ss_pred Cchhhhhhccccccccceeccccccccc-------cceeeccCCCCChHHhhhc---CCCccCHHHHHHHHHhHHhhhhh
Q 040540 449 FDSECEVLRNVRHRNLIKIISSCSNPDF-------KALVLEFMPNGSLEKWLYS---HNYFLDILERLNIMIDVGSALEY 518 (669)
Q Consensus 449 ~~~e~~~l~~l~h~niv~l~~~~~~~~~-------~~lv~ey~~~g~L~~~l~~---~~~~l~~~~~~~i~~~i~~~l~~ 518 (669)
...++..+..++|||++++++++..... .++||||+++ ++.+.+.. ....+++.....++.+++.|+.|
T Consensus 66 ~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~ 144 (360)
T 3e3p_A 66 ELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGC 144 (360)
T ss_dssp HHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcccHHHhhhccccccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHH
Confidence 3455666778899999999998855332 6899999985 55554432 44568888999999999999999
Q ss_pred hhcCCCCCCeeecCCCCcc-------------------------cccccccccccCccccccCCC-cCccccchhhHHHH
Q 040540 519 LRHGHSSAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGI-VSAKCDVYSYGVLL 572 (669)
Q Consensus 519 lh~~~~~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~s~Gvil 572 (669)
||.. ..+|+|+|+|+.. ......||+.|+|||++.+.. ++.++|||||||++
T Consensus 145 lH~~--~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il 222 (360)
T 3e3p_A 145 LHLP--SVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIF 222 (360)
T ss_dssp HTST--TTCCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHH
T ss_pred HhCC--CCCeecCcCCHHHEEEeCCCCcEEEeeCCCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHH
Confidence 9932 4589999999531 111235899999999886644 89999999999999
Q ss_pred HHHHhCCCCCCcCCCCCccHHHHHHHhCCCC--cccccccc-----------ccchhhhhhhhHHHHHHHHHHHhhcccC
Q 040540 573 METFTRKRPTDEMFTGEMSLRRWVKESLPHR--LSEVVDTN-----------LVREEQAFSAKMDCLLSIMDLALDCCME 639 (669)
Q Consensus 573 ~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~c~~~ 639 (669)
|||+||+.||..... ...+...++...... ....+++. ..-..............+.+++.+||+.
T Consensus 223 ~ell~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~ 301 (360)
T 3e3p_A 223 AEMMLGEPIFRGDNS-AGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQY 301 (360)
T ss_dssp HHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCS
T ss_pred HHHHhCCCCcCCCCh-HHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhcc
Confidence 999999999976321 111222222111100 00000000 0000000000112456789999999999
Q ss_pred CCCCCCCHHHHHH
Q 040540 640 SPDKRMHMTDAAA 652 (669)
Q Consensus 640 ~P~~Rps~~~v~~ 652 (669)
||.+|||+.|+++
T Consensus 302 dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 302 LPEERMKPYEALC 314 (360)
T ss_dssp SGGGSCCHHHHTT
T ss_pred CccccCCHHHHhc
Confidence 9999999999976
No 336
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=99.86 E-value=2.2e-22 Score=209.16 Aligned_cols=197 Identities=19% Similarity=0.192 Sum_probs=137.1
Q ss_pred ccCchhhhhhccccccccceeccccccccc------cceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDF------KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~------~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
+.+..|+..+..++|||++++++++..... .++||||++ |+|.+++.. .+++.....++.++++||+|||
T Consensus 68 ~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~LH 143 (353)
T 3coi_A 68 KRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMGL---KFSEEKIQYLVYQMLKGLKYIH 143 (353)
T ss_dssp HHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECCS-EEGGGTTTS---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcccHhheEecccccccceeEEEEecccc-CCHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999998876543 489999998 689888753 3899999999999999999999
Q ss_pred cCCCCCCeeecCCCCcc----------------------cccccccccccCccccccC-CCcCccccchhhHHHHHHHHh
Q 040540 521 HGHSSAPIIHCEGEDSV----------------------TQTTTMATIGYMAPEYGSE-GIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~----------------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~s~Gvil~el~t 577 (669)
.. +++|+|+++.. ......||+.|+|||++.+ ..++.++|||||||++|||++
T Consensus 144 ~~----~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~ 219 (353)
T 3coi_A 144 SA----GVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLT 219 (353)
T ss_dssp HT----TCCCSSCCGGGEEECTTCCEEECSTTCTTC--------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHH
T ss_pred HC----CcccCCCCHHHEeECCCCcEEEeecccccCCCCCccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHh
Confidence 54 79999999541 1122358999999998876 668999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHh-CCC-Cccccccc--------cccc-hhhhh-hhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 578 RKRPTDEMFTGEMSLRRWVKES-LPH-RLSEVVDT--------NLVR-EEQAF-SAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~-~~~-~~~~~~~~--------~~~~-~~~~~-~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
|+.||...... ..+...++.. .+. .....+.. .+.. ....+ .........+.+++.+|++.||++||
T Consensus 220 g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rp 298 (353)
T 3coi_A 220 GKTLFKGKDYL-DQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRL 298 (353)
T ss_dssp SSCSSBSSCHH-HHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSC
T ss_pred CCCCCCCCCHH-HHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCC
Confidence 99999753211 1111111110 000 00000000 0000 00000 00123456788999999999999999
Q ss_pred CHHHHHH
Q 040540 646 HMTDAAA 652 (669)
Q Consensus 646 s~~~v~~ 652 (669)
|+.|+++
T Consensus 299 t~~e~l~ 305 (353)
T 3coi_A 299 TAAQALT 305 (353)
T ss_dssp CHHHHHT
T ss_pred CHHHHhc
Confidence 9999975
No 337
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=99.86 E-value=4.6e-23 Score=211.98 Aligned_cols=184 Identities=18% Similarity=0.173 Sum_probs=119.6
Q ss_pred hhhh-hhccccccccceeccccccccccceeeccCCCCChHHhhhc----CCCccCHHHHHHHHHhHHhhhhhhhcCCCC
Q 040540 451 SECE-VLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYS----HNYFLDILERLNIMIDVGSALEYLRHGHSS 525 (669)
Q Consensus 451 ~e~~-~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~----~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~ 525 (669)
.|.. .++.++|||++++++++...+..++||||++ |+|.+++.. ....+++.....++.++++|+.|||..
T Consensus 69 ~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--- 144 (327)
T 3aln_A 69 MDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMS-TSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKEN--- 144 (327)
T ss_dssp HHHHHHHSSCCCTTBCCEEEEEECSSEEEEEECCCS-EEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEeecC-CChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhcc---
Confidence 3444 6677899999999999998888999999998 488887753 245689999999999999999999952
Q ss_pred CCeeecCCCCcc------------------------cccccccccccCccccc----cCCCcCccccchhhHHHHHHHHh
Q 040540 526 APIIHCEGEDSV------------------------TQTTTMATIGYMAPEYG----SEGIVSAKCDVYSYGVLLMETFT 577 (669)
Q Consensus 526 ~~i~h~d~~~~~------------------------~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~s~Gvil~el~t 577 (669)
.+++|+|+++.. ......||+.|+|||++ .+..++.++|||||||++|||++
T Consensus 145 ~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~ 224 (327)
T 3aln_A 145 LKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELAT 224 (327)
T ss_dssp HSCCCSCCCGGGEEEETTTEEEECCCSSSCC------------------------------CCSHHHHHHHHHHHHHHHH
T ss_pred CCEeECCCCHHHEEEcCCCCEEEccCCCceecccccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHH
Confidence 279999999541 01122589999999998 45668999999999999999999
Q ss_pred CCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 578 RKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 578 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
|+.||........ ...... ....+.+... ........+.+++.+||+.||++||++.|+++
T Consensus 225 g~~pf~~~~~~~~----~~~~~~-----~~~~~~~~~~-----~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 225 GRFPYPKWNSVFD----QLTQVV-----KGDPPQLSNS-----EEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp SCCCSSCC-----------CCCC-----CSCCCCCCCC-----SSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCCCCCCcchHHH----HHHHHh-----cCCCCCCCCc-----ccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 9999975321110 000000 0000111000 01123456789999999999999999999976
No 338
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.6e-21 Score=186.37 Aligned_cols=181 Identities=22% Similarity=0.241 Sum_probs=145.2
Q ss_pred CCCccceeeCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCc
Q 040540 38 ICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPS 117 (669)
Q Consensus 38 ~c~~~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 117 (669)
.|.|.++.|.. +++. .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++.+..+.
T Consensus 6 ~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (208)
T 2o6s_A 6 SCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70 (208)
T ss_dssp EEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred EECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence 46787777753 3333 233322 35788999999988877777788889999999999988866666
Q ss_pred cccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCC
Q 040540 118 WIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNL 197 (669)
Q Consensus 118 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L 197 (669)
.|..+++|++|+|++|++++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 78888999999999999887666678889999999999998887777778889999999999999987777778889999
Q ss_pred CEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhh
Q 040540 198 KNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIG 240 (669)
Q Consensus 198 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 240 (669)
++|++++|.+.+. +++|+.|+++.|.++|.+|..++
T Consensus 151 ~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 151 QYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTS
T ss_pred cEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCc
Confidence 9999999987754 45788888999999999998776
No 339
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.8e-21 Score=196.42 Aligned_cols=192 Identities=21% Similarity=0.309 Sum_probs=93.6
Q ss_pred cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 72 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
..+++|++|++++|.+.. +| .+..+++|++|++++|.+.+..+ +..+++|++|+|++|.+++. +.+..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 345556666666665553 33 35556666666666666553322 55666666666666665532 23555555555
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l 231 (669)
|++++|.+.+. + .+..+++|++|++++|.+++..+ ++.+++|++|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 55555555432 1 25555555555555555543322 4555555555555555554222 44445555555555544
Q ss_pred ccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCc
Q 040540 232 SGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSF 280 (669)
Q Consensus 232 ~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l 280 (669)
++ ++. + ..+++|++|++++|++.+..+ +..+++|+.|++++|.+
T Consensus 186 ~~-~~~-l-~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 186 SD-ISP-L-ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CC-CGG-G-GGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEE
T ss_pred Cc-Chh-h-cCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCee
Confidence 42 221 1 134444444444444433221 33344444444444433
No 340
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.85 E-value=5e-22 Score=224.35 Aligned_cols=179 Identities=18% Similarity=0.247 Sum_probs=138.0
Q ss_pred cCchhhhhhccccccccceeccccccccc-----cceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDF-----KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~-----~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
.+..|+..+..++||||+++++++...+. .++||||+++++|.+++.. .+++.++..|+.++++||.|||..
T Consensus 125 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~aL~~lH~~ 201 (681)
T 2pzi_A 125 MAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPALSYLHSI 201 (681)
T ss_dssp HHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEEEEEECCCCEECC----C---CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCceeEEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHC
Confidence 46678999999999999999999877655 5899999999999998764 589999999999999999999954
Q ss_pred CCCCCeeecCCCCcc--------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCC
Q 040540 523 HSSAPIIHCEGEDSV--------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPT 582 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~--------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~ 582 (669)
+|+|||+|+.. ......||+.|+|||++.+. ++.++|||||||++|||++|..|+
T Consensus 202 ----giiHrDlkp~NIll~~~~~kl~DFG~a~~~~~~~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~ 276 (681)
T 2pzi_A 202 ----GLVYNDLKPENIMLTEEQLKLIDLGAVSRINSFGYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTR 276 (681)
T ss_dssp ----TEECCCCSGGGEEECSSCEEECCCTTCEETTCCSCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEE
T ss_pred ----CCeecccChHHeEEeCCcEEEEecccchhcccCCccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCC
Confidence 79999999641 11233599999999988665 488999999999999999999887
Q ss_pred CcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC-CHHHHHHHHHHhHHH
Q 040540 583 DEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM-HMTDAAAKLKKIKVK 660 (669)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp-s~~~v~~~l~~~~~~ 660 (669)
........ + .. .........+.+++.+||+.||++|| +++++...+.++...
T Consensus 277 ~~~~~~~~----------~------------~~----~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~ 329 (681)
T 2pzi_A 277 NGRYVDGL----------P------------ED----DPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLRE 329 (681)
T ss_dssp TTEECSSC----------C------------TT----CHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHHH
T ss_pred cccccccc----------c------------cc----ccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHHH
Confidence 54221110 0 00 00122345678999999999999999 577777777776544
No 341
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1e-20 Score=180.73 Aligned_cols=181 Identities=19% Similarity=0.201 Sum_probs=152.3
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 78 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
+.++.+++.++ .+|..+ .++|++|++++|++.+..+..|+++++|++|+|++|++++..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 56788888887 455444 468999999999999777778899999999999999999776677889999999999999
Q ss_pred cccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccch
Q 040540 158 IIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPS 237 (669)
Q Consensus 158 ~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 237 (669)
.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 9997777778999999999999999988777778899999999999999998777678888999999999998764
Q ss_pred hhhccCCCCCeeecccCcccccCCccccCCCC
Q 040540 238 TIGHSLRNIEYLALSTNNLIGKIPNSITNATK 269 (669)
Q Consensus 238 ~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~ 269 (669)
.+++|++|+++.|+++|.+|..++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3567888888888888888877765543
No 342
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.1e-20 Score=192.08 Aligned_cols=191 Identities=25% Similarity=0.392 Sum_probs=167.0
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|+++++++.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|++.+ + ..+..+++|++|+|
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEEC
Confidence 468999999999975 44 68999999999999999986554 9999999999999999985 3 36999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|++++. | .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++.
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 99999864 4 39999999999999999986544 8899999999999999986544 89999999999999999976
Q ss_pred CCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccc
Q 040540 211 IPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIG 258 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~ 258 (669)
.+ +..+++|++|++++|.+++..+ +. .+++|++|++++|.+++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~-~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVSP--LA-NTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCGG--GT-TCTTCCEEEEEEEEEEC
T ss_pred hh--hcCCCCCCEEEccCCccCcccc--cc-CCCCCCEEEccCCeeec
Confidence 44 8899999999999999985443 43 68999999999999875
No 343
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=5.8e-24 Score=237.51 Aligned_cols=375 Identities=13% Similarity=0.106 Sum_probs=182.9
Q ss_pred CCEEEEEcCCCCCccc---cccc------------ccCCCCCCEEeCCCCcCcccCCcccC-CCCCCCEEEccCC-cCCc
Q 040540 51 QRVTALNLSDMGLGGT---IPLH------------FGNLSFLVSLDISENNFHGHLPKELG-QLRRLRVMSLAYN-KLSG 113 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~---~~~~------------~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~ 113 (669)
.+++.|+++++..... .|.. ...+++|++|+|++|.+++..+..+. .+++|+.|+|++| .+..
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 5677777777653211 1111 23567788888888777766655554 5778888888777 3432
Q ss_pred c-CCccccCCcccccccccccCccccCCccc----CCCCCCCeeeccccc--ccc-cCCcccCCCCCCCEEEcccCCCcc
Q 040540 114 S-FPSWIGVLSKLRILRLDYNNFTGPIPNSL----FNLSRLEMLRAEFNI--IGG-TIPSRIGNLRKLVNLGLWSCNLQG 185 (669)
Q Consensus 114 ~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~l~~n~--l~~-~~p~~~~~L~~L~~L~l~~n~l~~ 185 (669)
. ++..+.++++|++|+|++|.+++..+..+ ..+++|+.|++++|. ++. .++..+.++++|++|++++|...+
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 2 34444567788888888877765443333 356678888887775 211 112223446778888887774333
Q ss_pred cCCccccCCCCCCEEEccCCCC-------CCCCCccccC------------------------CCCCcEEEcccCCCccc
Q 040540 186 QIPTEIGSLQNLKNLDLADNKL-------SGLIPPTIFN------------------------ISTMRILTLESNQLSGR 234 (669)
Q Consensus 186 ~~p~~~~~l~~L~~L~l~~N~l-------~~~~p~~~~~------------------------l~~L~~L~l~~n~l~~~ 234 (669)
.+|..+..+++|++|++..+.. .+ ++..+.+ +++|++|++++|.+++.
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~ 304 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH
Confidence 4666666777777777554421 11 1223334 44555555555554332
Q ss_pred cchhhhccCCCCCeeecccCccccc-CCccccCCCCCCEEeCC---------CCCccccCcccc-CCCCCCCEEEccCCc
Q 040540 235 LPSTIGHSLRNIEYLALSTNNLIGK-IPNSITNATKLIGLDLG---------FNSFSGHIPNTF-GNLRHLSVLNVMMNN 303 (669)
Q Consensus 235 ~p~~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~ls---------~n~l~~~~p~~~-~~l~~L~~L~l~~N~ 303 (669)
....+...+++|++|++++| +... ++.....+++|+.|+++ .+.+++.....+ ..+++|+.|.+..|.
T Consensus 305 ~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~ 383 (594)
T 2p1m_B 305 DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ 383 (594)
T ss_dssp HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC
T ss_pred HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC
Confidence 22222224455555555544 2111 11111234455555442 122222111111 124455555444444
Q ss_pred cccCCCCCccccccccc-CCCCCCCEEECc--C----CCCcccc-chhHhhhhccccccceEeecCcccCCCCCccccc-
Q 040540 304 LTTESSSADQWSFLSSL-TNCRNLSNLALA--S----NPLGGIL-PQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGT- 374 (669)
Q Consensus 304 l~~~~~~~~~~~~~~~l-~~l~~L~~L~l~--~----n~l~~~~-~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~- 374 (669)
++... +..+ ..+++|+.|+++ + +.++... ...+......+++|+.|++++ .+++.....+..
T Consensus 384 l~~~~--------~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~ 454 (594)
T 2p1m_B 384 MTNAA--------LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTY 454 (594)
T ss_dssp CCHHH--------HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHH
T ss_pred cCHHH--------HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHh
Confidence 33210 0111 134555555555 2 2222111 011111122344555555544 333322222322
Q ss_pred cCCCcEEecCCCcccccCchhh-cCCCCCCeeeCcCCccceeCcc-cccCCCCCCEEECCCCcc
Q 040540 375 LQQLQGFYVPENNLQGYVPHDL-CHLERLNILNLSGNKLSGHIPP-CLASLTSLRELHLGSNKL 436 (669)
Q Consensus 375 l~~L~~l~l~~n~~~~~~p~~~-~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~l~~N~l 436 (669)
+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++|+.|++++|++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 4556666666665544333333 3455666666666665433222 223355666666666654
No 344
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=4.5e-21 Score=198.73 Aligned_cols=200 Identities=17% Similarity=0.107 Sum_probs=132.0
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCC-ccccCCccccc-cccccc
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFP-SWIGVLSKLRI-LRLDYN 133 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~L~~n 133 (669)
++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++|+. +.+++|
T Consensus 14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 344455665 455544 3578999999999986666778999999999999999876555 56788888764 666778
Q ss_pred CccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEccc-CCCcccCCccccCCC-CCCEEEccCCCCCCCC
Q 040540 134 NFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWS-CNLQGQIPTEIGSLQ-NLKNLDLADNKLSGLI 211 (669)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~-n~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~ 211 (669)
+++...|..|..+++|++|++++|.+....+..+....++..|++.+ +++....+..|..+. .++.|++++|.++. +
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-I 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-E
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-C
Confidence 88877777888888888888888888766666666666777777755 345544444555543 46667777777664 3
Q ss_pred CccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCccccc
Q 040540 212 PPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGK 259 (669)
Q Consensus 212 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~ 259 (669)
|...+...+|+.+++++|...+.+|...+..+++|++|++++|+++..
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 333344445566665543222355554444555555555555555433
No 345
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=99.84 E-value=3e-21 Score=195.65 Aligned_cols=188 Identities=16% Similarity=0.198 Sum_probs=130.6
Q ss_pred Cchhhhhh-ccccccccceecccccc----ccccceeeccCCCCChHHhhhcCC-CccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 449 FDSECEVL-RNVRHRNLIKIISSCSN----PDFKALVLEFMPNGSLEKWLYSHN-YFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 449 ~~~e~~~l-~~l~h~niv~l~~~~~~----~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
+..|+..+ +..+|||++++++++.. ....++||||+++|+|.+++.... ..+++.....++.+++.|++|||.
T Consensus 57 ~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~- 135 (299)
T 3m2w_A 57 ARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS- 135 (299)
T ss_dssp HHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh-
Confidence 44677776 55689999999998866 667899999999999999998643 468999999999999999999995
Q ss_pred CCCCCeeecCCCCccccccc------ccccccCccccccCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHH
Q 040540 523 HSSAPIIHCEGEDSVTQTTT------MATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWV 596 (669)
Q Consensus 523 ~~~~~i~h~d~~~~~~~~~~------~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~ 596 (669)
.+++|+|+|+....... +--..|-..+...+..++.++||||+||++|||+||+.||........
T Consensus 136 ---~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~------ 206 (299)
T 3m2w_A 136 ---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTGEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI------ 206 (299)
T ss_dssp ---TTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTTCGGGGHHHHHHHHHHHHHHHHSSCSCCC------------
T ss_pred ---CCcccCCCCHHHEEEecCCCCCcEEEeccccccccccccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhh------
Confidence 47999999976322111 101112122334456789999999999999999999999965321110
Q ss_pred HHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 597 KESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
. ............. ...+.+...+..+.+++.+||+.||.+|||+.|+++
T Consensus 207 ~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 207 S---PGMKTRIRMGQYE---FPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp ----CCSCCSSCTTCCS---SCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred h---HHHHHHHhhcccc---CCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 0 0000000000000 000112334567889999999999999999999986
No 346
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.3e-20 Score=195.39 Aligned_cols=235 Identities=20% Similarity=0.160 Sum_probs=185.5
Q ss_pred CCccceeeCCC---------CCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCC-cccCCCCCCCE-EEcc
Q 040540 39 CSWAGISCGSR---------HQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLP-KELGQLRRLRV-MSLA 107 (669)
Q Consensus 39 c~~~g~~c~~~---------~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~-L~L~ 107 (669)
|.|..|.|... ...++.|+|++|+|+...+..|.++++|++|+|++|.+.+.+| ..|.++++|+. +.++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67888888542 2468999999999987666689999999999999999877665 56889998775 6777
Q ss_pred CCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeeccc-ccccccCCcccCCCC-CCCEEEcccCCCcc
Q 040540 108 YNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEF-NIIGGTIPSRIGNLR-KLVNLGLWSCNLQG 185 (669)
Q Consensus 108 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~L~-~L~~L~l~~n~l~~ 185 (669)
+|++....|+.|..+++|++|++++|++++..+..+....++..+++.. +.+....+..|..+. .++.|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 8999988889999999999999999999977777777888888999865 566666666777765 68999999999985
Q ss_pred cCCccccCCCCCCEEEccC-CCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccc
Q 040540 186 QIPTEIGSLQNLKNLDLAD-NKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSI 264 (669)
Q Consensus 186 ~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~ 264 (669)
..+ ......+|+.|++++ |.++...+..|.++++|++|++++|+++ .+|... +.+|+.|.+.++.-.+.+| .+
T Consensus 169 i~~-~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 169 IHN-SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG---LENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp ECT-TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS---CTTCCEEECTTCTTCCCCC-CT
T ss_pred CCh-hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhh---hccchHhhhccCCCcCcCC-Cc
Confidence 544 444567899999986 5666554557889999999999999997 677654 4566666655554444566 36
Q ss_pred cCCCCCCEEeCCCCC
Q 040540 265 TNATKLIGLDLGFNS 279 (669)
Q Consensus 265 ~~l~~L~~L~ls~n~ 279 (669)
.++++|+.++++++.
T Consensus 243 ~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 243 EKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCSCCEEECSCHH
T ss_pred hhCcChhhCcCCCCc
Confidence 777888888887654
No 347
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=6.7e-20 Score=199.80 Aligned_cols=181 Identities=24% Similarity=0.310 Sum_probs=108.8
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecc
Q 040540 76 FLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAE 155 (669)
Q Consensus 76 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (669)
+|+.|++++|.+++ +|..+. ++|++|+|++|++. .+| ..+++|++|+|++|+|++ +|. +++ +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 67777777777765 555442 56777777777766 455 345666677777766664 444 443 55555555
Q ss_pred cccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCcccc
Q 040540 156 FNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRL 235 (669)
Q Consensus 156 ~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 235 (669)
+|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-------------------------l 175 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-------------------------L 175 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-------------------------C
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-------------------------c
Confidence 555554 333 34455555555555543 332 23444455555444443 4
Q ss_pred chhhhccCCCCCeeecccCcccccCCccccC-----CCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccC
Q 040540 236 PSTIGHSLRNIEYLALSTNNLIGKIPNSITN-----ATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTE 307 (669)
Q Consensus 236 p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~-----l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 307 (669)
|. +. ++|++|+|++|+++ .+|. +.. ...|+.|++++|.+. .+|..+..+++|+.|++++|.+++.
T Consensus 176 p~-l~---~~L~~L~Ls~N~L~-~lp~-~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 176 PE-LP---ESLEALDVSTNLLE-SLPA-VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CC-CC---TTCCEEECCSSCCS-SCCC-CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred ch-hh---CCCCEEECcCCCCC-chhh-HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 43 21 45555555555554 3333 332 122499999999998 5787787899999999999998764
No 348
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=1.7e-21 Score=220.37 Aligned_cols=217 Identities=18% Similarity=0.193 Sum_probs=100.9
Q ss_pred hhhHHHHHHHHhhcCCCcccccCCCCCC-CCCCCccceeeCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCc
Q 040540 8 TTDQSSLLAFKAHAFDYRSALANNWSIS-YPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENN 86 (669)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~l~~~w~~~-~~~c~~~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~ 86 (669)
+.++++|+++..........-..+|... ...+.|.+..+.. .+++.|+|.++.+... +.. .|+.++|+.|.
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~ 202 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYS 202 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhh-----HhhcCccCccc
Confidence 3467889998866533332222335433 3456788776654 5789999999888753 322 23444444444
Q ss_pred Ccc---------cCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 87 FHG---------HLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 87 l~~---------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
+.+ ..|..+..+..|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..+++|++|++|++++|
T Consensus 203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred ccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence 432 34666777777777777777776 56666667777777777777777 66666777777777777777
Q ss_pred cccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCC-CcEEEcccCCCccccc
Q 040540 158 IIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNIST-MRILTLESNQLSGRLP 236 (669)
Q Consensus 158 ~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~p 236 (669)
.++ .+|..|++|++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..+.. +..+++++|.++|.+|
T Consensus 281 ~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 281 RLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred cCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 766 55666666666777776666665 55656666666666666666666665555543321 1124455555555444
No 349
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=2.1e-22 Score=224.90 Aligned_cols=376 Identities=13% Similarity=0.136 Sum_probs=252.5
Q ss_pred CCEEEEEcCCCCCccccccccc-CCCCCCEEeCCCC-cCccc-CCcccCCCCCCCEEEccCCcCCccCCcccc----CCc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFG-NLSFLVSLDISEN-NFHGH-LPKELGQLRRLRVMSLAYNKLSGSFPSWIG----VLS 123 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~-~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~----~l~ 123 (669)
.+++.|+++++.+++..+..+. .+++|++|+|++| .+... ++..+.++++|++|+|++|.+.+..+.++. .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4789999999988877666665 6889999999998 45432 444455789999999999987765444443 567
Q ss_pred ccccccccccC--cccc-CCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCC------------------
Q 040540 124 KLRILRLDYNN--FTGP-IPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCN------------------ 182 (669)
Q Consensus 124 ~L~~L~L~~n~--l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~------------------ 182 (669)
+|++|++++|. ++.. ++..+.++++|+.|++++|...+.+|..+..+++|++|+++.+.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 89999999886 2211 12223456889999998873333366677777778887755442
Q ss_pred --------Cc----ccCCccccCCCCCCEEEccCCCCCCCCCc-cccCCCCCcEEEcccCCCccccchhhhccCCCCCee
Q 040540 183 --------LQ----GQIPTEIGSLQNLKNLDLADNKLSGLIPP-TIFNISTMRILTLESNQLSGRLPSTIGHSLRNIEYL 249 (669)
Q Consensus 183 --------l~----~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L 249 (669)
+. +.+|..+..+++|++|++++|.+++.... .+..+++|+.|++++| +.......+...+++|++|
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence 11 12344444678999999999997653222 3558899999999998 4433333344458999999
Q ss_pred eccc---------CcccccCCccc-cCCCCCCEEeCCCCCccccCccccC-CCCCCCEEEccC------CccccCCCCCc
Q 040540 250 ALST---------NNLIGKIPNSI-TNATKLIGLDLGFNSFSGHIPNTFG-NLRHLSVLNVMM------NNLTTESSSAD 312 (669)
Q Consensus 250 ~ls~---------n~l~~~~p~~~-~~l~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~L~l~~------N~l~~~~~~~~ 312 (669)
++++ +.+++.....+ ..+++|+.|+++.|.+++..+..+. .+++|+.|+++. |.++..+.
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~--- 420 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL--- 420 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT---
T ss_pred EEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch---
Confidence 9843 34433222222 2478999999998988866555554 588999999983 34432210
Q ss_pred ccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccc-cccCCCcEEecCCCccccc
Q 040540 313 QWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSI-GTLQQLQGFYVPENNLQGY 391 (669)
Q Consensus 313 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~l~~L~~l~l~~n~~~~~ 391 (669)
...+...+..+++|+.|++++ .+.+.....+. ..+++|+.|++++|.+++.....+ ..+++|+.|++++|.+++.
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~---~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG---TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH---HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred hhHHHHHHhhCCCccEEeecC-cccHHHHHHHH---HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 001112245678999999977 55543333332 246789999999999876544444 6689999999999998654
Q ss_pred Cch-hhcCCCCCCeeeCcCCccceeCcccc-cCCCCCCEEECCCC
Q 040540 392 VPH-DLCHLERLNILNLSGNKLSGHIPPCL-ASLTSLRELHLGSN 434 (669)
Q Consensus 392 ~p~-~~~~l~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~l~~N 434 (669)
... ....+++|+.|++++|.++......+ ..++.|+...+..+
T Consensus 497 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 497 ALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 443 34458899999999999854433333 34566665555443
No 350
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=2.1e-19 Score=174.18 Aligned_cols=162 Identities=22% Similarity=0.198 Sum_probs=117.7
Q ss_pred CCCCCCCCCccceeeCCCCCCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcC
Q 040540 32 WSISYPICSWAGISCGSRHQRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKL 111 (669)
Q Consensus 32 w~~~~~~c~~~g~~c~~~~~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 111 (669)
|......|+|.++.|.. +++. .+|..+. ++|++|+|++|.+.+..|..|..+++|++|+|++|++
T Consensus 12 ~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp CCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 55566789998877753 3332 4444333 7899999999999988888899999999999999999
Q ss_pred CccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccc
Q 040540 112 SGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEI 191 (669)
Q Consensus 112 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~ 191 (669)
....+..|.++++|++|+|++|++++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+..|
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 7666677888999999999999888666666677777777777777766 556666666666666666666665555556
Q ss_pred cCCCCCCEEEccCCCCCC
Q 040540 192 GSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 192 ~~l~~L~~L~l~~N~l~~ 209 (669)
..+++|+.|++++|.+.+
T Consensus 156 ~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTCTTCCEEECTTSCBCT
T ss_pred hCCCCCCEEEeeCCCccC
Confidence 666666666666666554
No 351
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=99.80 E-value=1.5e-20 Score=199.32 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=107.0
Q ss_pred ceeeccCCCCChHHhhh------cCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc--------------
Q 040540 478 ALVLEFMPNGSLEKWLY------SHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV-------------- 537 (669)
Q Consensus 478 ~lv~ey~~~g~L~~~l~------~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~-------------- 537 (669)
+++|+++ +++|.+++. .....+++..+..|+.|+++||+|||. .+|+|||+|+..
T Consensus 181 ~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~----~~iiHrDiKp~NILl~~~~~~kL~DF 255 (413)
T 3dzo_A 181 FFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH----YGLVHTYLRPVDIVLDQRGGVFLTGF 255 (413)
T ss_dssp EEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH----TTEECSCCCGGGEEECTTCCEEECCG
T ss_pred EEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHh----CCcccCCcccceEEEecCCeEEEEec
Confidence 4556654 589999984 234567888999999999999999995 479999999641
Q ss_pred --------cccccccccccCccccc----------cCCCcCccccchhhHHHHHHHHhCCCCCCcCCCCCccHHHHHHHh
Q 040540 538 --------TQTTTMATIGYMAPEYG----------SEGIVSAKCDVYSYGVLLMETFTRKRPTDEMFTGEMSLRRWVKES 599 (669)
Q Consensus 538 --------~~~~~~gt~~y~aPE~~----------~~~~~~~~~Dv~s~Gvil~el~tg~~p~~~~~~~~~~l~~~~~~~ 599 (669)
......| +.|+|||++ ....++.++|||||||++|||+||+.||........
T Consensus 256 G~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~~--------- 325 (413)
T 3dzo_A 256 EHLVRDGASAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGG--------- 325 (413)
T ss_dssp GGCEETTEEECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGSC---------
T ss_pred cceeecCCccccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhhh---------
Confidence 1122357 999999998 555688999999999999999999999975321110
Q ss_pred CCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q 040540 600 LPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRMHMTDAAA 652 (669)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rps~~~v~~ 652 (669)
...++. . ....+..+.+++.+||+.||++||++.|+++
T Consensus 326 ----~~~~~~----~-------~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l~ 363 (413)
T 3dzo_A 326 ----SEWIFR----S-------CKNIPQPVRALLEGFLRYPKEDRLLPLQAME 363 (413)
T ss_dssp ----SGGGGS----S-------CCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ----HHHHHh----h-------cccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 011110 0 0112356789999999999999999888854
No 352
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=7.6e-19 Score=168.96 Aligned_cols=152 Identities=22% Similarity=0.263 Sum_probs=108.8
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
+.++++++++. .+|..+. ++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34677777776 3455443 67889999999988777778888888999999988888777888888888888888888
Q ss_pred CccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCC
Q 040540 134 NFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLS 208 (669)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 208 (669)
+++...+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888555555666777777777776666666666666666666666666666555555555556666666555554
No 353
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=8.8e-19 Score=168.54 Aligned_cols=153 Identities=20% Similarity=0.228 Sum_probs=100.6
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCC-cccCCCCCCCEEEccCCcCCccCCccccCCcccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLP-KELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 132 (669)
+.++++++.++. +|..+. ..+++|+|++|.+++..| ..|..+++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 367888888764 555443 346788888888876654 3467778888888888887766666777777777777777
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
|.+++..|..|.++++|++|++++|.+.+..|..|..+++|++|++++|++++..|..|..+++|+.|++++|.+.+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 77776655556666666666666666665555555555555555555555555555555555555555555555543
No 354
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=4.1e-19 Score=184.78 Aligned_cols=176 Identities=24% Similarity=0.192 Sum_probs=142.7
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccC-CCCCCCEEEccCCcCCccCCccccCCcccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELG-QLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 132 (669)
+.++++++++.. +|..+. ..++.|+|++|.+++..+..|. .+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 468888888874 565543 4589999999999988888887 899999999999999987788899999999999999
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccc---cCCCCCCEEEccCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEI---GSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~---~~l~~L~~L~l~~N~l~~ 209 (669)
|++++..+..|.++++|++|++++|.+.+..|..|.++++|++|+|++|++++..+..| ..+++|+.|+|++|.+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99998777788889999999999999888888888888888888888888886555445 567888888888888887
Q ss_pred CCCccccCCCC--CcEEEcccCCCc
Q 040540 210 LIPPTIFNIST--MRILTLESNQLS 232 (669)
Q Consensus 210 ~~p~~~~~l~~--L~~L~l~~n~l~ 232 (669)
..+..+..++. ++.|++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 66566666665 366777777664
No 355
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=7.6e-19 Score=168.98 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=141.5
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCC-ccccCCcccccccccccCccccCCcccCCCCCCCeeeccc
Q 040540 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFP-SWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEF 156 (669)
Q Consensus 78 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 156 (669)
+++++++|.++. +|..+. ..+++|+|++|++++..| ..|..+++|++|+|++|++++..+..|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 589999999974 676554 457899999999997755 5689999999999999999988888999999999999999
Q ss_pred ccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccc
Q 040540 157 NIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLP 236 (669)
Q Consensus 157 n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 236 (669)
|.+++..+..|.++++|++|++++|++++..|..|..+++|++|+|++|.+++..|..|..+++|+.|++++|.+.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99998888889999999999999999999999999999999999999999999999999999999999999999876544
No 356
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.1e-18 Score=167.89 Aligned_cols=152 Identities=22% Similarity=0.219 Sum_probs=129.5
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 78 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
+.+++++|.++ .+|..+. ..|+.|++++|++.+..+..|..+++|++|+|++|++++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57889999887 5666554 68999999999998777778999999999999999999888888999999999999999
Q ss_pred cccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCc
Q 040540 158 IIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLS 232 (669)
Q Consensus 158 ~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~ 232 (669)
.++...+..|..+++|++|++++|.+++..|..|..+++|++|+|++|.+++..+..+..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 988766667788889999999999988888888888888899999888888877777888888888888888765
No 357
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=2.7e-21 Score=211.94 Aligned_cols=190 Identities=18% Similarity=0.165 Sum_probs=106.2
Q ss_pred cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCc-------------CCccCCccccCCccccccc-ccccCccc
Q 040540 72 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK-------------LSGSFPSWIGVLSKLRILR-LDYNNFTG 137 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~l~~ 137 (669)
...++|+.|+|++|.+. .+|..++++++|+.|++++|. +.+.+|..++++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34555555555555554 455555555555555554443 3344444555555555555 4444332
Q ss_pred cCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccC
Q 040540 138 PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFN 217 (669)
Q Consensus 138 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 217 (669)
+|+.+.+..|.+....+ ..|+.|++++|.+++ +|. ++.+++|+.|+|++|.++ .+|..+.+
T Consensus 424 ----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 22333334444432211 136667777776664 454 666667777777777666 45666666
Q ss_pred CCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccC-CccccCCCCCCEEeCCCCCccccCc
Q 040540 218 ISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKI-PNSITNATKLIGLDLGFNSFSGHIP 285 (669)
Q Consensus 218 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~ls~n~l~~~~p 285 (669)
+++|+.|++++|.+++ +| .+. .+++|++|+|++|++++.. |..+..+++|+.|++++|.+++.+|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~-~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCEEECCCCCCCC-Cc-ccC-CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 6666666666666664 55 343 4666666666666666554 6666666666666666666655433
No 358
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.4e-18 Score=180.83 Aligned_cols=175 Identities=23% Similarity=0.249 Sum_probs=136.1
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCcccc-CCcccccccccccCccccCCcccCCCCCCCeeeccc
Q 040540 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIG-VLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEF 156 (669)
Q Consensus 78 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 156 (669)
+++++++|.+. .+|..+. ..++.|+|++|++++..+..+. ++++|++|+|++|++++..|..|.++++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57899999987 4666554 4589999999999987777787 899999999999999988888899999999999999
Q ss_pred ccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccc---cCCCCCcEEEcccCCCcc
Q 040540 157 NIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTI---FNISTMRILTLESNQLSG 233 (669)
Q Consensus 157 n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~---~~l~~L~~L~l~~n~l~~ 233 (669)
|.+.+..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+..+ ..+++|+.|++++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 99988777788889999999999999988888888888899999999998886544444 45777777777777776
Q ss_pred ccchhhhccCCC--CCeeecccCcc
Q 040540 234 RLPSTIGHSLRN--IEYLALSTNNL 256 (669)
Q Consensus 234 ~~p~~~~~~l~~--L~~L~ls~n~l 256 (669)
.+|...+..++. ++.|+|++|.+
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ccCHHHhhhccHhhcceEEecCCCc
Confidence 344333324444 25556665554
No 359
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=8.7e-19 Score=176.32 Aligned_cols=185 Identities=24% Similarity=0.347 Sum_probs=102.0
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCc
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNF 135 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 135 (669)
+.+..+.+.+..+ +..+++|++|++++|.+... + .+..+++|++|++++|++.+..+ +.++++|++|+|++|.+
T Consensus 29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 3444444443322 34566677777777766533 3 36666777777777777664333 66677777777777766
Q ss_pred cccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccc
Q 040540 136 TGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTI 215 (669)
Q Consensus 136 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 215 (669)
++ + +.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++..| +
T Consensus 103 ~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 103 KD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp CC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence 54 2 2355666666666666655542 3455556666666666665543 345555666666666666554433 4
Q ss_pred cCCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCccc
Q 040540 216 FNISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLI 257 (669)
Q Consensus 216 ~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~ 257 (669)
..+++|+.|++++|.+++ ++. +. .+++|+.|++++|.+.
T Consensus 175 ~~l~~L~~L~L~~N~i~~-l~~-l~-~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISD-LRA-LA-GLKNLDVLELFSQECL 213 (291)
T ss_dssp TTCTTCCEEECCSSCCCB-CGG-GT-TCTTCSEEEEEEEEEE
T ss_pred cCCCccCEEECCCCcCCC-Chh-hc-cCCCCCEEECcCCccc
Confidence 555555555555555542 222 22 3444555555444443
No 360
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.1e-18 Score=192.51 Aligned_cols=172 Identities=25% Similarity=0.369 Sum_probs=82.6
Q ss_pred cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 72 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
..|++|+.|++++|.+.. +| .+..+++|+.|+|++|++.+..| +..+++|+.|+|++|.+++ + +.+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 344455555555555442 22 24445555555555555543322 4455555555555555543 1 23445555555
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l 231 (669)
|++++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 55555554431 2344555555555555555433 334555555555555555554433 44555555555555555
Q ss_pred ccccchhhhccCCCCCeeecccCcccc
Q 040540 232 SGRLPSTIGHSLRNIEYLALSTNNLIG 258 (669)
Q Consensus 232 ~~~~p~~~~~~l~~L~~L~ls~n~l~~ 258 (669)
++ +| .+. .+++|+.|+|++|.+.+
T Consensus 188 ~~-l~-~l~-~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 188 SD-LR-ALA-GLKNLDVLELFSQECLN 211 (605)
T ss_dssp CB-CG-GGT-TCTTCSEEECCSEEEEC
T ss_pred CC-Ch-HHc-cCCCCCEEEccCCcCcC
Confidence 43 22 222 34555555555555543
No 361
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.9e-18 Score=173.81 Aligned_cols=169 Identities=24% Similarity=0.330 Sum_probs=150.3
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|++.+ +| .+..+++|++|+|
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 4689999999999755 3 58899999999999999987555 9999999999999999985 33 4999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
++|++++. +.+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..| +..+++|+.|++++|.+++.
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence 99999864 5688999999999999999875 679999999999999999987655 89999999999999999974
Q ss_pred CCccccCCCCCcEEEcccCCCcc
Q 040540 211 IPPTIFNISTMRILTLESNQLSG 233 (669)
Q Consensus 211 ~p~~~~~l~~L~~L~l~~n~l~~ 233 (669)
| .+..+++|+.|++++|.++.
T Consensus 194 -~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 194 -R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -G-GGTTCTTCSEEEEEEEEEEC
T ss_pred -h-hhccCCCCCEEECcCCcccC
Confidence 4 48999999999999999863
No 362
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=4.8e-18 Score=164.49 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=131.3
Q ss_pred CCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeeccc
Q 040540 77 LVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEF 156 (669)
Q Consensus 77 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 156 (669)
-+.++.+++.+. .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+++...+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 356888888886 5666554 8899999999999988899999999999999999999866667788999999999999
Q ss_pred ccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCcccc
Q 040540 157 NIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRL 235 (669)
Q Consensus 157 n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 235 (669)
|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|+|++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9998777777888999999999999988 67888888899999999999998777777888888888888888876543
No 363
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=2.5e-18 Score=189.58 Aligned_cols=193 Identities=22% Similarity=0.295 Sum_probs=153.3
Q ss_pred CCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeee
Q 040540 74 LSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLR 153 (669)
Q Consensus 74 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 153 (669)
+..+..+++..+.+.+..+ +..+..|+.|++++|.+.. +| .+..+++|+.|+|++|++++..| +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 3345556777777765544 4678889999999999874 44 58889999999999999986554 88999999999
Q ss_pred cccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCcc
Q 040540 154 AEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSG 233 (669)
Q Consensus 154 l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 233 (669)
+++|.+.+ + ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++
T Consensus 94 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 99998875 3 3688899999999999998753 4588889999999999998875 678888889999999888876
Q ss_pred ccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCcccc
Q 040540 234 RLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGH 283 (669)
Q Consensus 234 ~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ 283 (669)
..| +. .+++|+.|+|++|++.+. ..+..+++|+.|+|++|.+.+.
T Consensus 168 ~~~--l~-~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP--LA-GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG--GT-TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred chh--hc-cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 555 43 688888888888888764 3577888888888888887754
No 364
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=3.7e-18 Score=161.32 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=98.2
Q ss_pred cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 72 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
+.+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..|..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 55667777777777776 444 4677777777777777554 3346677777777777777777666666777777777
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l 231 (669)
|++++|.+++..|..++.+++|++|++++|.+.+.+| .+..+++|++|++++|.+++. + .+..+++|+.|++++|.+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 7777776666666666666667777776666223444 466666666666666666642 2 455555555555555554
No 365
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=6.3e-19 Score=199.34 Aligned_cols=219 Identities=19% Similarity=0.171 Sum_probs=125.9
Q ss_pred CCCCEEeCCCCcCcccCCcccCCCCCCCEE-----EccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCC
Q 040540 75 SFLVSLDISENNFHGHLPKELGQLRRLRVM-----SLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRL 149 (669)
Q Consensus 75 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L-----~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 149 (669)
+.++.|+|++|.+.. .+..+.....|+.+ +++.|.+. ..|+.+..+.+|+.|+|++|.++ .+|..++++++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 567889999998875 34433333333332 33334443 45788999999999999999998 788888899999
Q ss_pred CeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccC
Q 040540 150 EMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESN 229 (669)
Q Consensus 150 ~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n 229 (669)
++|++++|.++ .+|..|++|++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..|.++++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 99999999999 89999999999999999999998 78999999999999999999998 67888999999999999999
Q ss_pred CCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCC--------CccccCccccCCCCCCCEEEccC
Q 040540 230 QLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFN--------SFSGHIPNTFGNLRHLSVLNVMM 301 (669)
Q Consensus 230 ~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n--------~l~~~~p~~~~~l~~L~~L~l~~ 301 (669)
.+++.+|..+...-.....+++++|.+.+.+|..+ ..|+++.| .+.+..+..+..+..+....+++
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l------~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~ 400 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER------RFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSY 400 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------------------------------------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcccc------ceeEeecccccccccCCccccccchhhcccccceeeeec
Confidence 99998888775321223347899999998888654 45566665 22333333344455555555555
Q ss_pred Cccc
Q 040540 302 NNLT 305 (669)
Q Consensus 302 N~l~ 305 (669)
|.+.
T Consensus 401 Nil~ 404 (727)
T 4b8c_D 401 NTLC 404 (727)
T ss_dssp -CCC
T ss_pred cccc
Confidence 5543
No 366
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=9.7e-18 Score=158.41 Aligned_cols=152 Identities=13% Similarity=0.175 Sum_probs=132.8
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
.+++.|++++|++. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|++.+..|..++.+++|++|+|
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 46899999999998 555 6899999999999999775 4457999999999999999999888999999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
++|.+++..|..+..+++|++|++++|...+.+| .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 9999998889999999999999999998444555 68999999999999999986 44 68899999999999999864
No 367
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=5.5e-20 Score=201.62 Aligned_cols=206 Identities=19% Similarity=0.162 Sum_probs=153.7
Q ss_pred CCCCCCCEEEccCCcCCccCCccccCCcccccccccccC-------------ccccCCcccCCCCCCCeee-cccccccc
Q 040540 96 GQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNN-------------FTGPIPNSLFNLSRLEMLR-AEFNIIGG 161 (669)
Q Consensus 96 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-l~~n~l~~ 161 (669)
..++.|+.|+|++|++. .+|+.++++++|+.|++++|. +.+..|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 56778888888888886 678888888888888887765 3445555566666666665 444432
Q ss_pred cCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhc
Q 040540 162 TIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGH 241 (669)
Q Consensus 162 ~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 241 (669)
..|..+.+++|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+.
T Consensus 423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~- 483 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA- 483 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG-
T ss_pred ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh-
Confidence 223334455555553322 248999999999997 565 899999999999999998 7888777
Q ss_pred cCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccC-ccccCCCCCCCEEEccCCccccCCCCCccccccccc
Q 040540 242 SLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHI-PNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSL 320 (669)
Q Consensus 242 ~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l 320 (669)
.+++|++|+|++|++++ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.+++.+.... ..+
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~-----~l~ 556 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE-----RLA 556 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT-----HHH
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH-----HHH
Confidence 69999999999999987 56 7889999999999999998876 8889999999999999998887643221 112
Q ss_pred CCCCCCCEEE
Q 040540 321 TNCRNLSNLA 330 (669)
Q Consensus 321 ~~l~~L~~L~ 330 (669)
..+++|+.|+
T Consensus 557 ~~lp~L~~L~ 566 (567)
T 1dce_A 557 EMLPSVSSIL 566 (567)
T ss_dssp HHCTTCSEEE
T ss_pred HHCcccCccC
Confidence 2356666664
No 368
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.9e-17 Score=162.49 Aligned_cols=165 Identities=19% Similarity=0.255 Sum_probs=96.9
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccc
Q 040540 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132 (669)
Q Consensus 53 v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 132 (669)
++.++++++++.+.. .+..+++|++|++++|.++. +| .+..+++|++|+|++|++.+..| +.++++|++|+|++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 445666666665433 46677777777777777763 34 56677777777777777765433 77777777777777
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIP 212 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 212 (669)
|++++ +|.. .. ++|+.|++++|.+++. ..+..+++|++|++++|++++. + .++.+++|++|++++|.+++.
T Consensus 95 N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 95 NRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 77764 3322 22 5666666666655542 2355555555555555555543 2 355555555555555555543
Q ss_pred ccccCCCCCcEEEcccCCCc
Q 040540 213 PTIFNISTMRILTLESNQLS 232 (669)
Q Consensus 213 ~~~~~l~~L~~L~l~~n~l~ 232 (669)
..+..+++|+.|++++|.++
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCccc
Confidence 33444444444444444443
No 369
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.70 E-value=1.4e-18 Score=178.99 Aligned_cols=167 Identities=13% Similarity=0.007 Sum_probs=116.2
Q ss_pred ccccceecccccc-------------ccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh-cCCCCC
Q 040540 461 HRNLIKIISSCSN-------------PDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLR-HGHSSA 526 (669)
Q Consensus 461 h~niv~l~~~~~~-------------~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh-~~~~~~ 526 (669)
|||++++++++.. ....++||||+++|++.+.+.+ ..+++.....|+.|+++||+||| ..
T Consensus 108 hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~---- 181 (336)
T 2vuw_A 108 PPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT--KLSSLATAKSILHQLTASLAVAEASL---- 181 (336)
T ss_dssp CHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT--TCCCHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred cHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHhC----
Confidence 6666666666654 6778999999999987777754 45799999999999999999999 43
Q ss_pred CeeecCCCCccc----------------------------------------ccccccccccCccccccCCCcCccccch
Q 040540 527 PIIHCEGEDSVT----------------------------------------QTTTMATIGYMAPEYGSEGIVSAKCDVY 566 (669)
Q Consensus 527 ~i~h~d~~~~~~----------------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~ 566 (669)
+|+|||+|+... ....+||+.|||||++.+.. +.++|||
T Consensus 182 ~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~~~~gt~~y~aPE~~~g~~-~~~~Diw 260 (336)
T 2vuw_A 182 RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDG-DYQFDIY 260 (336)
T ss_dssp CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETTEEECCCCTTCSGGGCCCS-SHHHHHH
T ss_pred CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCCcEEEeecccChhhhcCCC-ccceehh
Confidence 799999995310 01125899999999998765 8899999
Q ss_pred hhHHH-HHHHHhCCCCCCcCCCCCccHHHHHHHhCCCCccccccccccchhhhhhhhHHHHHHHHHHHhhcccCCCCCCC
Q 040540 567 SYGVL-LMETFTRKRPTDEMFTGEMSLRRWVKESLPHRLSEVVDTNLVREEQAFSAKMDCLLSIMDLALDCCMESPDKRM 645 (669)
Q Consensus 567 s~Gvi-l~el~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~~~~P~~Rp 645 (669)
|+|++ .+++.+|..||...... ..+.+.+...... . .. ...+.+...+..+.+++.+|++.|
T Consensus 261 sl~~~~~~~~~~g~~p~~~~~~~-~~~~~~~~~~~~~--~----~~-----~~~~~~~~~s~~~~dli~~~L~~d----- 323 (336)
T 2vuw_A 261 RLMKKENNNRWGEYHPYSNVLWL-HYLTDKMLKQMTF--K----TK-----CNTPAMKQIKRKIQEFHRTMLNFS----- 323 (336)
T ss_dssp HHHHHHHTTCTTSCCTHHHHHHH-HHHHHHHHHTCCC--S----SC-----CCSHHHHHHHHHHHHHHHHGGGSS-----
T ss_pred hhhCCCCcccccccCCCcchhhh-hHHHHhhhhhhcc--C----cc-----cchhhhhhcCHHHHHHHHHHhccC-----
Confidence 98777 77889999987431000 0001111100000 0 00 001224567788999999999976
Q ss_pred CHHHHH
Q 040540 646 HMTDAA 651 (669)
Q Consensus 646 s~~~v~ 651 (669)
|++|++
T Consensus 324 sa~e~l 329 (336)
T 2vuw_A 324 SATDLL 329 (336)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 888886
No 370
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1.4e-16 Score=149.71 Aligned_cols=129 Identities=23% Similarity=0.310 Sum_probs=71.8
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCc-ccCCCCCCCEEEccCCcCCccCCccccCCcccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPK-ELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 132 (669)
+.+++++++++ .+|..+.. +|++|++++|.+.+..+. .|+.+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666663 44544332 666666666666654443 255666666666666666555555555555555555555
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
|++++..| ..|.++++|++|++++|++++..|..|..+++|++|++++|.+++
T Consensus 88 N~l~~~~~------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISN------------------------KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECS------------------------SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCH------------------------HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 55554443 334444445555555555555555555555555666665555554
No 371
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.6e-17 Score=164.28 Aligned_cols=169 Identities=19% Similarity=0.294 Sum_probs=105.9
Q ss_pred CCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCee
Q 040540 73 NLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEML 152 (669)
Q Consensus 73 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 152 (669)
.+..++.+++++|.+.+.. .+..+++|++|++++|.+. .+| .+..+++|++|+|++|++++..| +.++++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4556677788888887543 4677888888888888887 455 67788888888888888875443 7777777777
Q ss_pred ecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCc
Q 040540 153 RAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLS 232 (669)
Q Consensus 153 ~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~ 232 (669)
++++|.+++ +|.. .. ++|++|++++|.+++. + .+..+++|+.|++++|++++. + .+..+++|+.|++++|.++
T Consensus 91 ~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCcc-cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 777777764 3322 22 6666666666666642 2 366666666666666666643 2 4555555555555555554
Q ss_pred cccchhhhccCCCCCeeecccCccc
Q 040540 233 GRLPSTIGHSLRNIEYLALSTNNLI 257 (669)
Q Consensus 233 ~~~p~~~~~~l~~L~~L~ls~n~l~ 257 (669)
+. ..+. .+++|++|++++|.+.
T Consensus 164 ~~--~~l~-~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 NT--GGLT-RLKKVNWIDLTGQKCV 185 (263)
T ss_dssp BC--TTST-TCCCCCEEEEEEEEEE
T ss_pred ch--HHhc-cCCCCCEEeCCCCccc
Confidence 32 1121 3444444444444443
No 372
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.3e-16 Score=149.85 Aligned_cols=114 Identities=21% Similarity=0.238 Sum_probs=87.0
Q ss_pred ccccccccccCccccCCc-ccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEc
Q 040540 124 KLRILRLDYNNFTGPIPN-SLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDL 202 (669)
Q Consensus 124 ~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 202 (669)
+|++|+|++|++++..+. .+..+++|++|++++|.+++..|..|.++++|++|++++|++++..|..|..+++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 444444555544433332 2455555555555555555666777788888888888889999888888999999999999
Q ss_pred cCCCCCCCCCccccCCCCCcEEEcccCCCccccch
Q 040540 203 ADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPS 237 (669)
Q Consensus 203 ~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 237 (669)
++|.+++..|..+..+++|++|++++|.+.+..+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 99999999999999999999999999999876553
No 373
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=1.8e-16 Score=145.57 Aligned_cols=130 Identities=22% Similarity=0.201 Sum_probs=49.6
Q ss_pred CCCEEeCCCCcCc-ccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeec
Q 040540 76 FLVSLDISENNFH-GHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRA 154 (669)
Q Consensus 76 ~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 154 (669)
+|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|+|++|.+++.+|..+.++++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3444444444443 33333333444444444444443322 33333444444444444443333333333333333333
Q ss_pred cccccccc-CCcccCCCCCCCEEEcccCCCcccCC---ccccCCCCCCEEEccCCCC
Q 040540 155 EFNIIGGT-IPSRIGNLRKLVNLGLWSCNLQGQIP---TEIGSLQNLKNLDLADNKL 207 (669)
Q Consensus 155 ~~n~l~~~-~p~~~~~L~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~l~~N~l 207 (669)
++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 33333221 11233334444444444444433222 2344444444444444443
No 374
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=3.1e-16 Score=143.93 Aligned_cols=133 Identities=20% Similarity=0.185 Sum_probs=91.0
Q ss_pred CCCCCCEEEccCCcCC-ccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCE
Q 040540 97 QLRRLRVMSLAYNKLS-GSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVN 175 (669)
Q Consensus 97 ~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~ 175 (669)
..++|+.|++++|.+. +.+|..+..+++|++|+|++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3477889999999887 67888888888899999988888754 66777777777777777776666666666667777
Q ss_pred EEcccCCCcccC-CccccCCCCCCEEEccCCCCCCCCC---ccccCCCCCcEEEcccCCC
Q 040540 176 LGLWSCNLQGQI-PTEIGSLQNLKNLDLADNKLSGLIP---PTIFNISTMRILTLESNQL 231 (669)
Q Consensus 176 L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p---~~~~~l~~L~~L~l~~n~l 231 (669)
|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 777766666432 2456666666666666666665433 2455555555555555544
No 375
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=1.4e-16 Score=143.04 Aligned_cols=125 Identities=21% Similarity=0.210 Sum_probs=53.5
Q ss_pred CCCEEeCCCCcCc-ccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeec
Q 040540 76 FLVSLDISENNFH-GHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRA 154 (669)
Q Consensus 76 ~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 154 (669)
+|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..++.+++|++|+|++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444444 34444444444444444444444432 33444444444444444444333333333344444444
Q ss_pred cccccccc-CCcccCCCCCCCEEEcccCCCcccCC---ccccCCCCCCEEEc
Q 040540 155 EFNIIGGT-IPSRIGNLRKLVNLGLWSCNLQGQIP---TEIGSLQNLKNLDL 202 (669)
Q Consensus 155 ~~n~l~~~-~p~~~~~L~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~l 202 (669)
++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 44433321 22334444444444444444443333 23444455555544
No 376
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=2.5e-15 Score=140.96 Aligned_cols=126 Identities=24% Similarity=0.337 Sum_probs=65.6
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccC
Q 040540 55 ALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNN 134 (669)
Q Consensus 55 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 134 (669)
.++++++++. .+|..+. ++|++|++++|.++ .+|..|..+++|++|+|++|++++..+..|.++++|++|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4666666665 3443332 35666666666655 444555555555555555555555444555555555555555555
Q ss_pred ccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCC
Q 040540 135 FTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLS 208 (669)
Q Consensus 135 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 208 (669)
+++.. |..|.++++|++|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus 90 l~~i~------------------------~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIP------------------------PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCC------------------------TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeC------------------------HHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 54433 334444444444444444444433444555555555555555543
No 377
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=3.3e-16 Score=140.58 Aligned_cols=128 Identities=19% Similarity=0.151 Sum_probs=116.4
Q ss_pred CCEEEEEcCCCCCc-ccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccc
Q 040540 51 QRVTALNLSDMGLG-GTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 51 ~~v~~L~ls~~~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 129 (669)
.+++.|++++|++. +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|++.+.+|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56899999999998 78888899999999999999999876 7789999999999999999987898888999999999
Q ss_pred ccccCcccc-CCcccCCCCCCCeeecccccccccCC---cccCCCCCCCEEEccc
Q 040540 130 LDYNNFTGP-IPNSLFNLSRLEMLRAEFNIIGGTIP---SRIGNLRKLVNLGLWS 180 (669)
Q Consensus 130 L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p---~~~~~L~~L~~L~l~~ 180 (669)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999874 45889999999999999999987766 5789999999998863
No 378
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=4.3e-15 Score=137.51 Aligned_cols=127 Identities=21% Similarity=0.238 Sum_probs=68.6
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCc
Q 040540 56 LNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNF 135 (669)
Q Consensus 56 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 135 (669)
++++++++.. +|..+ .++|++|++++|.+.+..+..|+.+++|++|++++|++++..+..|+.+++|++|+|++|++
T Consensus 12 l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 12 IRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp EECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 4444455542 33322 25677777777777655555566666666666666666654445556666666666666655
Q ss_pred cccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 136 TGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 136 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 89 ~~~~~~------------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 89 QSLPNG------------------------VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCTT------------------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccCHH------------------------HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 543333 33344444444444444443333334455555555555555554
No 379
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=4.3e-15 Score=139.37 Aligned_cols=109 Identities=25% Similarity=0.307 Sum_probs=98.5
Q ss_pred CCEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccc
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRL 130 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 130 (669)
..++.|++++|.++ .+|..|..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 57999999999997 67788999999999999999999888889999999999999999999888889999999999999
Q ss_pred cccCccccCCcccCCCCCCCeeeccccccc
Q 040540 131 DYNNFTGPIPNSLFNLSRLEMLRAEFNIIG 160 (669)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 160 (669)
++|.+++..+..|..+++|+.|++++|.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 999999766666778888888888877764
No 380
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.59 E-value=8.8e-17 Score=176.24 Aligned_cols=127 Identities=16% Similarity=-0.003 Sum_probs=90.8
Q ss_pred cccCchhhhhhccc-cccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCC
Q 040540 446 FRSFDSECEVLRNV-RHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHS 524 (669)
Q Consensus 446 ~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~ 524 (669)
.+.|.+|+++++++ .|+|++++++++......||||||++|++|.++|.+. .+++.. +|+.||+.||+|+|.
T Consensus 285 ~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~~~-~~l~~~---~I~~QIl~AL~ylH~--- 357 (569)
T 4azs_A 285 KYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAAG-EEIDRE---KILGSLLRSLAALEK--- 357 (569)
T ss_dssp HHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHHTT-CCCCHH---HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHHhC-CCCCHH---HHHHHHHHHHHHHHH---
Confidence 35688899999999 7999999999999999999999999999999999854 456543 589999999999995
Q ss_pred CCCeeecCCCCcc-------------------------cccccccccccCccccccCCCcCccccchhhHHHHHHHHhCC
Q 040540 525 SAPIIHCEGEDSV-------------------------TQTTTMATIGYMAPEYGSEGIVSAKCDVYSYGVLLMETFTRK 579 (669)
Q Consensus 525 ~~~i~h~d~~~~~-------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~s~Gvil~el~tg~ 579 (669)
.+|||||+|+.. ...+.+||++|||||++.+. +..++|+||.|++.+++.+|.
T Consensus 358 -~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~ 435 (569)
T 4azs_A 358 -QGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPW 435 (569)
T ss_dssp -TTCEESCCCGGGEEECTTSCEEECCCTTEESCC---CCSHHHHHHHHHHHHHHC------------------CCCCTTH
T ss_pred -CCceeccCchHhEEECCCCCEEEeecccCeeCCCCCccccCceechhhccHHHhCCC-CCCcccccccccchhhhcccc
Confidence 489999999541 11234699999999998754 677899999999988876654
Q ss_pred CC
Q 040540 580 RP 581 (669)
Q Consensus 580 ~p 581 (669)
.|
T Consensus 436 ~~ 437 (569)
T 4azs_A 436 SN 437 (569)
T ss_dssp HH
T ss_pred ch
Confidence 43
No 381
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.3e-14 Score=134.29 Aligned_cols=113 Identities=22% Similarity=0.206 Sum_probs=79.3
Q ss_pred ccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEcc
Q 040540 124 KLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLA 203 (669)
Q Consensus 124 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 203 (669)
+|++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444443333344445555555555555554445556778888888888888887777778899999999999
Q ss_pred CCCCCCCCCccccCCCCCcEEEcccCCCccccc
Q 040540 204 DNKLSGLIPPTIFNISTMRILTLESNQLSGRLP 236 (669)
Q Consensus 204 ~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 236 (669)
+|.+++..+..+..+++|++|++++|.+.+..|
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999997766667788899999999998876554
No 382
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=5.1e-15 Score=151.76 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=59.0
Q ss_pred CCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCC-EEEccCCccccCCCCCcccccccccC
Q 040540 243 LRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLS-VLNVMMNNLTTESSSADQWSFLSSLT 321 (669)
Q Consensus 243 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~~~l~ 321 (669)
+++|+.+++++|+++...+..|.++.+|+.+++.+| +....+.+|.++++|+ .+++.. +++.++. ..+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~--------~aF~ 294 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF--------GAFM 294 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT--------TTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch--------hhhh
Confidence 567777777777776666666777777777777776 5545556677777777 777755 4443322 3456
Q ss_pred CCCCCCEEECcCCCCccccchhH
Q 040540 322 NCRNLSNLALASNPLGGILPQLI 344 (669)
Q Consensus 322 ~l~~L~~L~l~~n~l~~~~~~~~ 344 (669)
+|++|+.+++..|.+..+.+..+
T Consensus 295 ~c~~L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 295 GCDNLRYVLATGDKITTLGDELF 317 (329)
T ss_dssp TCTTEEEEEECSSCCCEECTTTT
T ss_pred CCccCCEEEeCCCccCccchhhh
Confidence 67777777777776665554433
No 383
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=1.1e-14 Score=149.11 Aligned_cols=260 Identities=13% Similarity=0.039 Sum_probs=165.2
Q ss_pred CEEEEEcCCCCCcccccccccC-CCCCCEEeCCCCcCc--ccCCcccCCCCCCCEEEccCCcCCccCCccccC-------
Q 040540 52 RVTALNLSDMGLGGTIPLHFGN-LSFLVSLDISENNFH--GHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGV------- 121 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~-l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~------- 121 (669)
+++.|.++++- .+.-...+.. +++|++|||++|.+. ...+..+ +.++.+.+..|.+ .+..|.+
T Consensus 26 ~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 26 SITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGVTK 98 (329)
T ss_dssp HCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTEEE
T ss_pred ceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhccccccccc
Confidence 46777776431 1111112333 788999999999887 3222222 2245555555533 2345555
Q ss_pred -CcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCC----cccCCccccCCC-
Q 040540 122 -LSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNL----QGQIPTEIGSLQ- 195 (669)
Q Consensus 122 -l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l----~~~~p~~~~~l~- 195 (669)
+++|+.|+|.+ .++..-+..|.++++|+.++++.|.+....+.+|.++.++..+....+.. ...-...|..+.
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 88888888877 77766666788888888888888877766677777776666665544211 111111222222
Q ss_pred -------------------------CCCEEEccCCCCCCCCCccc-cCCCCCcEEEcccCCCccccchhhhccCCCCCee
Q 040540 196 -------------------------NLKNLDLADNKLSGLIPPTI-FNISTMRILTLESNQLSGRLPSTIGHSLRNIEYL 249 (669)
Q Consensus 196 -------------------------~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L 249 (669)
++..+.+.++-.. .....+ ..+++|+.+++++|.++ .+|...+.++.+|+.|
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEE
Confidence 3334443332111 001111 13678888888888876 6787777788888888
Q ss_pred ecccCcccccCCccccCCCCCC-EEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCE
Q 040540 250 ALSTNNLIGKIPNSITNATKLI-GLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSN 328 (669)
Q Consensus 250 ~ls~n~l~~~~p~~~~~l~~L~-~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~ 328 (669)
++.+| +....+.+|.++.+|+ .+++.. .+....+.+|.++++|+.+++..|+++..+. ..+.+|++|+.
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~--------~aF~~~~~L~~ 325 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD--------ELFGNGVPSKL 325 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT--------TTTCTTCCCCE
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch--------hhhcCCcchhh
Confidence 88887 6666677888888898 888887 5665666788888999999888888877643 34677888888
Q ss_pred EEC
Q 040540 329 LAL 331 (669)
Q Consensus 329 L~l 331 (669)
++.
T Consensus 326 ly~ 328 (329)
T 3sb4_A 326 IYK 328 (329)
T ss_dssp EEC
T ss_pred hcc
Confidence 764
No 384
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=9.6e-15 Score=135.01 Aligned_cols=85 Identities=16% Similarity=0.136 Sum_probs=41.0
Q ss_pred ccCCCCCCEEeCCCCcCcccCCcccCCCC-CCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCC
Q 040540 71 FGNLSFLVSLDISENNFHGHLPKELGQLR-RLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRL 149 (669)
Q Consensus 71 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 149 (669)
+.+..+|++|++++|.+.. +|. +..+. +|++|++++|.+.+. +.+..+++|++|+|++|.+++..|..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4455556666666665552 233 23322 555555555555532 345555555555555555553322222444444
Q ss_pred Ceeecccccc
Q 040540 150 EMLRAEFNII 159 (669)
Q Consensus 150 ~~L~l~~n~l 159 (669)
++|++++|.+
T Consensus 91 ~~L~L~~N~i 100 (176)
T 1a9n_A 91 TELILTNNSL 100 (176)
T ss_dssp CEEECCSCCC
T ss_pred CEEECCCCcC
Confidence 4444444443
No 385
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=5.9e-17 Score=153.10 Aligned_cols=132 Identities=25% Similarity=0.311 Sum_probs=79.4
Q ss_pred CEEEEEcCCCCCcccccc------cccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccc
Q 040540 52 RVTALNLSDMGLGGTIPL------HFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKL 125 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 125 (669)
.++.++++.+.+.|.+|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 344455555555555554 66677777777777777765 45 6666777777777777766 456666666777
Q ss_pred ccccccccCccccCCcccCCCCCCCeeecccccccccCC-cccCCCCCCCEEEcccCCCcccCC
Q 040540 126 RILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIP-SRIGNLRKLVNLGLWSCNLQGQIP 188 (669)
Q Consensus 126 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~L~~L~~L~l~~n~l~~~~p 188 (669)
++|+|++|++++ +| .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.+|
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 777777777664 33 45556666666666666553221 345555555555555555544433
No 386
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=5.1e-17 Score=153.54 Aligned_cols=133 Identities=25% Similarity=0.319 Sum_probs=77.7
Q ss_pred ccCCCCCCEEeCCCCcCcccCCc------ccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccC
Q 040540 71 FGNLSFLVSLDISENNFHGHLPK------ELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLF 144 (669)
Q Consensus 71 ~~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 144 (669)
+.....++.++++.|.+.|..|. .+..+++|++|++++|++.+ +| .+.++++|++|+|++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 45566777777777777777665 67777777777777777764 55 6677777777777777766 4555555
Q ss_pred CCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCC-ccccCCCCCCEEEccCCCCC
Q 040540 145 NLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIP-TEIGSLQNLKNLDLADNKLS 208 (669)
Q Consensus 145 ~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~ 208 (669)
.+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.++
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 55556666665555543 22 34444445555554444442211 23444444444444444443
No 387
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=4.8e-14 Score=130.29 Aligned_cols=132 Identities=20% Similarity=0.219 Sum_probs=76.6
Q ss_pred ccCCCCCCCEEEccCCcCCccCCccccCCc-ccccccccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCC
Q 040540 94 ELGQLRRLRVMSLAYNKLSGSFPSWIGVLS-KLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRK 172 (669)
Q Consensus 94 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~ 172 (669)
.+.++.+|+.|++++|++.. +|. +..+. +|++|+|++|.+++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 35567788888888888873 454 44444 788888888887754 45666666666666666665443333455556
Q ss_pred CCEEEcccCCCcccCCc--cccCCCCCCEEEccCCCCCCCCCcc----ccCCCCCcEEEcccCCC
Q 040540 173 LVNLGLWSCNLQGQIPT--EIGSLQNLKNLDLADNKLSGLIPPT----IFNISTMRILTLESNQL 231 (669)
Q Consensus 173 L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~~~~p~~----~~~l~~L~~L~l~~n~l 231 (669)
|++|++++|.+. .+|. .+..+++|+.|++++|.++. +|.. +..+++|+.|+++.|..
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 666666666553 3333 45555555555555555542 2322 44444455554444443
No 388
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=2.6e-13 Score=124.31 Aligned_cols=105 Identities=20% Similarity=0.180 Sum_probs=78.3
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
+.++++++++.. +|..+ .++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 567888888864 55544 377888888888888777888888888888888888888666667788888888888888
Q ss_pred CccccCCcccCCCCCCCeeecccccccc
Q 040540 134 NFTGPIPNSLFNLSRLEMLRAEFNIIGG 161 (669)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 161 (669)
++++..+..|.++++|++|++++|.+.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 8876555556666666666666666543
No 389
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.44 E-value=5.2e-12 Score=132.22 Aligned_cols=264 Identities=7% Similarity=0.032 Sum_probs=200.8
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccc
Q 040540 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDY 132 (669)
Q Consensus 53 v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 132 (669)
++.+.+. +++..+-...|.+. +|+.+++..| +......+|.+. +|+.+.+.. .+...-+..|.++.+|+.++|.+
T Consensus 115 l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 115 YNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp CSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred ccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence 3444443 24444445567774 7999999876 766667778774 799999985 66655667899999999999999
Q ss_pred cCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCC
Q 040540 133 NNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIP 212 (669)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 212 (669)
|+++......|. ..+|+.+.+..+ +...-..+|.++.+|+.+.+..+ ++..-...|.. .+|+.+.+ .+.++....
T Consensus 190 n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~ 264 (401)
T 4fdw_A 190 TKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIAS 264 (401)
T ss_dssp SCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECT
T ss_pred CcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEECh
Confidence 999855444555 689999999854 66667788999999999999864 56566667777 78999999 556776677
Q ss_pred ccccCCCCCcEEEcccCCCc----cccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCcccc
Q 040540 213 PTIFNISTMRILTLESNQLS----GRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTF 288 (669)
Q Consensus 213 ~~~~~l~~L~~L~l~~n~l~----~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~ 288 (669)
..|.++++|+.+++.+|.+. ..++...+.++++|+.+++. +.+.......|.++.+|+.+.+..| +...-..+|
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 88999999999999988763 23777777789999999998 4577667788999999999999665 555566789
Q ss_pred CCCCCCCEEEccCCccccCCCCCcccccccccCCC-CCCCEEECcCCCCc
Q 040540 289 GNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNC-RNLSNLALASNPLG 337 (669)
Q Consensus 289 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~n~l~ 337 (669)
.++ +|+.+.+..|.+..... ..+..+ .++..+.+..+.+.
T Consensus 343 ~~~-~L~~l~l~~n~~~~l~~--------~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTTPPQVFE--------KVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSS-CCCEEEECCSSCCBCCC--------SSCCCSCTTCCEEEECGGGHH
T ss_pred CCC-CCCEEEEcCCCCccccc--------ccccCCCCCccEEEeCHHHHH
Confidence 999 99999999887765432 224445 36788888776543
No 390
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=5e-13 Score=122.46 Aligned_cols=106 Identities=22% Similarity=0.260 Sum_probs=63.7
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 78 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
++|++++|.++. +|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~------------------ 70 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP------------------ 70 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC------------------
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC------------------
Confidence 566677766653 444432 56666666666666555566666666666666666665433
Q ss_pred cccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCC
Q 040540 158 IIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGL 210 (669)
Q Consensus 158 ~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 210 (669)
+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.++..
T Consensus 71 ------~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 71 ------AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp ------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ------hhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 33445555555666666666655555566667777777777776644
No 391
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=5.1e-13 Score=122.84 Aligned_cols=104 Identities=20% Similarity=0.190 Sum_probs=76.2
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 54 TALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 54 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
+.+++++++++ .+|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56888888884 5665553 77888888888888777888888888888888888888655566777888888888888
Q ss_pred CccccCCcccCCCCCCCeeeccccccc
Q 040540 134 NFTGPIPNSLFNLSRLEMLRAEFNIIG 160 (669)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~l~~n~l~ 160 (669)
++++..+..|..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 877544444666666666666666554
No 392
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=1.4e-11 Score=128.93 Aligned_cols=251 Identities=11% Similarity=0.052 Sum_probs=196.1
Q ss_pred cCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCe
Q 040540 72 GNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEM 151 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 151 (669)
.....++.+.+.+ .++.....+|.+. +|+.+.+..+ +...-...|.+ .+|+.+.+.. .++..-+..|.++++|+.
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3457788888875 4665667778875 7999999876 66555667877 5799999986 777677788999999999
Q ss_pred eecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCC
Q 040540 152 LRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQL 231 (669)
Q Consensus 152 L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l 231 (669)
+++..|.+.......|. ..+|+.+.+.. .+...-...|..+++|+.+++..| ++..-...|.+ .+|+.+.+.+ .+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Cc
Confidence 99999998876666776 58999999984 477677788999999999999875 55555556666 8999999954 44
Q ss_pred ccccchhhhccCCCCCeeecccCccc-----ccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCcccc
Q 040540 232 SGRLPSTIGHSLRNIEYLALSTNNLI-----GKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTT 306 (669)
Q Consensus 232 ~~~~p~~~~~~l~~L~~L~ls~n~l~-----~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 306 (669)
+ .++...+..+.+|+.+++.+|.+. ...+..|..+++|+.+++.. .+...-..+|.++++|+.+.+..| ++.
T Consensus 260 ~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 260 T-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp C-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred c-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 4 677777778999999999887764 35567899999999999994 466566778999999999999644 544
Q ss_pred CCCCCcccccccccCCCCCCCEEECcCCCCccccchhH
Q 040540 307 ESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLI 344 (669)
Q Consensus 307 ~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 344 (669)
... ..+.+| +|+.+.+.+|.+....+..+
T Consensus 337 I~~--------~aF~~~-~L~~l~l~~n~~~~l~~~~F 365 (401)
T 4fdw_A 337 INF--------SAFNNT-GIKEVKVEGTTPPQVFEKVW 365 (401)
T ss_dssp ECT--------TSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred EcH--------HhCCCC-CCCEEEEcCCCCcccccccc
Confidence 432 347788 99999999998765544433
No 393
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=7.7e-13 Score=121.61 Aligned_cols=105 Identities=17% Similarity=0.207 Sum_probs=64.2
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 78 VSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 78 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
+.+++++|.+. .+|..+. ++|++|+|++|++.+..|..|+++++|++|+|++|+|++..+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----------------- 74 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT----------------- 74 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh-----------------
Confidence 56677777664 4555443 566666666666666556666666666666666666654333
Q ss_pred cccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 158 IIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 158 ~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+..
T Consensus 75 -------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 75 -------GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp -------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred -------hHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 334555555555566666655444456666677777777776664
No 394
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.28 E-value=2.9e-13 Score=147.51 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=103.7
Q ss_pred cCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCC
Q 040540 448 SFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAP 527 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~ 527 (669)
.+.+|+.++.+++|||++++..++......++||||+++|+|.+++.. +..|+.|+++|++|||. .+
T Consensus 385 ~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVmE~~~ggsL~~~l~~---------~~~i~~qi~~aL~~LH~----~g 451 (540)
T 3en9_A 385 RTAREARYLALVKDFGIPAPYIFDVDLDNKRIMMSYINGKLAKDVIED---------NLDIAYKIGEIVGKLHK----ND 451 (540)
T ss_dssp HHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEEECCCSEEHHHHSTT---------CTHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEEECCCCCCHHHHHHH---------HHHHHHHHHHHHHHHHH----Cc
Confidence 467899999999999999766666677778999999999999999975 55799999999999995 47
Q ss_pred eeecCCCCccc------------------------------ccccccccccCccccccC--CCcCccccchhhHHHHHHH
Q 040540 528 IIHCEGEDSVT------------------------------QTTTMATIGYMAPEYGSE--GIVSAKCDVYSYGVLLMET 575 (669)
Q Consensus 528 i~h~d~~~~~~------------------------------~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~s~Gvil~el 575 (669)
|+|||+|+... .....||+.|||||++.. ..|+.++|+|+..+-..|.
T Consensus 452 IiHrDiKp~NILl~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~ 531 (540)
T 3en9_A 452 VIHNDLTTSNFIFDKDLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKD 531 (540)
T ss_dssp EECTTCCTTSEEESSSEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred CccCCCCHHHEEECCeEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999996410 123358999999999976 5688999999999999999
Q ss_pred HhCCCCCC
Q 040540 576 FTRKRPTD 583 (669)
Q Consensus 576 ~tg~~p~~ 583 (669)
+.++.+|.
T Consensus 532 v~~r~rY~ 539 (540)
T 3en9_A 532 VERRARYV 539 (540)
T ss_dssp HHTCSCCC
T ss_pred HHhccccC
Confidence 99888874
No 395
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=1.6e-11 Score=126.66 Aligned_cols=103 Identities=19% Similarity=0.175 Sum_probs=85.8
Q ss_pred EEcCCC-CCcccccccccCCCCCCEEeCCC-CcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 56 LNLSDM-GLGGTIPLHFGNLSFLVSLDISE-NNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 56 L~ls~~-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
++++++ ++.+ +|. +..+++|++|+|++ |.+.+..+..|.++++|+.|+|++|+|++..|..|++|++|++|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455666 6764 677 99999999999996 9999888888999999999999999999988889999999999999999
Q ss_pred CccccCCcccCCCCCCCeeecccccccc
Q 040540 134 NFTGPIPNSLFNLSRLEMLRAEFNIIGG 161 (669)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 161 (669)
+|++..+..+..++ |+.|++.+|.+..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99865555555555 8888888877653
No 396
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=5.1e-13 Score=138.48 Aligned_cols=111 Identities=18% Similarity=0.158 Sum_probs=56.9
Q ss_pred CCCCCEEeCCCCcCcccCCcccCC-----CCCCCEEEccCCcCCccCCcc-ccCCcccccccccccCccccCCccc----
Q 040540 74 LSFLVSLDISENNFHGHLPKELGQ-----LRRLRVMSLAYNKLSGSFPSW-IGVLSKLRILRLDYNNFTGPIPNSL---- 143 (669)
Q Consensus 74 l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~---- 143 (669)
++.|++|+|++|.++......+.. ..+|+.|+|++|.+....... ...+.+|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 356777777777776443333222 257777777777765332222 2345667777777777654322222
Q ss_pred -CCCCCCCeeecccccccc----cCCcccCCCCCCCEEEcccCCCc
Q 040540 144 -FNLSRLEMLRAEFNIIGG----TIPSRIGNLRKLVNLGLWSCNLQ 184 (669)
Q Consensus 144 -~~l~~L~~L~l~~n~l~~----~~p~~~~~L~~L~~L~l~~n~l~ 184 (669)
...++|+.|++++|.++. .++..+..+++|++|+|++|.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 123445555555555432 12222334444444444444443
No 397
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=3.2e-11 Score=124.37 Aligned_cols=103 Identities=19% Similarity=0.167 Sum_probs=56.8
Q ss_pred EeCCCC-cCcccCCcccCCCCCCCEEEccC-CcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccc
Q 040540 80 LDISEN-NFHGHLPKELGQLRRLRVMSLAY-NKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFN 157 (669)
Q Consensus 80 L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (669)
++++++ .++. +|. +..+++|+.|+|++ |.+.+..|..|++|++|++|+|++|+|++..|..|.+|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l----------- 79 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT----------- 79 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC-----------
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCC-----------
Confidence 455555 5553 455 66666666666664 66655555556666666666666666555544444444
Q ss_pred cccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 158 IIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 158 ~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
++|++|+|++|++++..+..|..++ |+.|+|.+|.+..
T Consensus 80 -------------~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 80 -------------PRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp -------------SCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred -------------cCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 4555555555555544444444443 6666666666653
No 398
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.18 E-value=1.8e-09 Score=113.33 Aligned_cols=312 Identities=10% Similarity=0.021 Sum_probs=169.8
Q ss_pred cccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCC
Q 040540 68 PLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLS 147 (669)
Q Consensus 68 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 147 (669)
..+|.+.++|+.+.+..+ ++.....+|.++.+|+.+++..+ +...-...|.++.+|+.+.+..+ ++..-...|.+..
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 446888888888888753 66566677888888888888755 44344567788888888776543 4434444555554
Q ss_pred CCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 040540 148 RLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLE 227 (669)
Q Consensus 148 ~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 227 (669)
.+........ ...-..+|.++.+|+.+.+..+. .......|..+.+|+.+++..| ++......+.+...|+.+.+.
T Consensus 141 ~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 141 FKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 3333322221 12223456677777777775433 3344455666667777666544 333334445555555555554
Q ss_pred cCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccC
Q 040540 228 SNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTE 307 (669)
Q Consensus 228 ~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 307 (669)
.+... +....+ ...+|+.+.+..+ +.......+..+..++.+.+..+... .....|.....++.+....+.+..
T Consensus 217 ~~~~~--i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~- 290 (394)
T 4fs7_A 217 NSLYY--LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE- 290 (394)
T ss_dssp TTCCE--ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT-
T ss_pred CCceE--eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc-
Confidence 43321 111111 2234444444322 12222334445555555555444322 223344444444444433221110
Q ss_pred CCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCc
Q 040540 308 SSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENN 387 (669)
Q Consensus 308 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~ 387 (669)
..+..+.+|+.+.+.. + +...-..+|..+.+|+.+.++++
T Consensus 291 ----------~~F~~~~~L~~i~l~~----------------------------~-i~~I~~~aF~~c~~L~~i~lp~~- 330 (394)
T 4fs7_A 291 ----------KTFYGCSSLTEVKLLD----------------------------S-VKFIGEEAFESCTSLVSIDLPYL- 330 (394)
T ss_dssp ----------TTTTTCTTCCEEEECT----------------------------T-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred ----------cccccccccccccccc----------------------------c-cceechhhhcCCCCCCEEEeCCc-
Confidence 1123344444443322 1 22223345666777777777644
Q ss_pred ccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCC
Q 040540 388 LQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGS 433 (669)
Q Consensus 388 ~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~ 433 (669)
++..-...|.++.+|+.+++..+ +......+|.++.+|+.+++..
T Consensus 331 v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 331 VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 55555667778888888888766 5556666788888888887753
No 399
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.15 E-value=8.2e-13 Score=136.94 Aligned_cols=158 Identities=17% Similarity=0.152 Sum_probs=107.9
Q ss_pred CCEEEEEcCCCCCcccccccccC-----CCCCCEEeCCCCcCcccCCccc-CCCCCCCEEEccCCcCCccCCccc-----
Q 040540 51 QRVTALNLSDMGLGGTIPLHFGN-----LSFLVSLDISENNFHGHLPKEL-GQLRRLRVMSLAYNKLSGSFPSWI----- 119 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~----- 119 (669)
..++.|+|++|.++......+.. ..+|++|+|++|.+.......+ ..+++|+.|+|++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 46899999999998654433332 3799999999999875433333 346789999999999975433333
Q ss_pred cCCcccccccccccCccc----cCCcccCCCCCCCeeeccccccccc----CCcccCCCCCCCEEEcccCCCccc----C
Q 040540 120 GVLSKLRILRLDYNNFTG----PIPNSLFNLSRLEMLRAEFNIIGGT----IPSRIGNLRKLVNLGLWSCNLQGQ----I 187 (669)
Q Consensus 120 ~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~L~~L~~L~l~~n~l~~~----~ 187 (669)
...++|++|+|++|.++. .++..+..+++|++|++++|.++.. ++..+...++|++|+|++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 346889999999999975 2445567889999999999998753 244455556666666666666532 2
Q ss_pred CccccCCCCCCEEEccCCCCC
Q 040540 188 PTEIGSLQNLKNLDLADNKLS 208 (669)
Q Consensus 188 p~~~~~l~~L~~L~l~~N~l~ 208 (669)
...+...++|++|+|++|.++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 222233345555555555544
No 400
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.07 E-value=1e-08 Score=107.55 Aligned_cols=295 Identities=10% Similarity=-0.004 Sum_probs=152.7
Q ss_pred CcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcc
Q 040540 87 FHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSR 166 (669)
Q Consensus 87 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 166 (669)
++.+-..+|.++.+|+.+.+..+ +...-..+|.++.+|+.++|..+ ++..-...|.++.+|+.+.+..+ +...-..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 44445567888888888888643 55444567888888888888654 55444556777777777665433 22223334
Q ss_pred cCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcccCCCccccchhhhccCCCC
Q 040540 167 IGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRILTLESNQLSGRLPSTIGHSLRNI 246 (669)
Q Consensus 167 ~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L 246 (669)
|.+...+....... ....-...|..+++|+.+.+..+. .......|.+..+|+.+.+..|
T Consensus 136 F~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~----------------- 195 (394)
T 4fs7_A 136 FKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN----------------- 195 (394)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-----------------
T ss_pred eecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-----------------
Confidence 44443322222111 111223345555555555554332 2222333444444444444433
Q ss_pred CeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCC
Q 040540 247 EYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNL 326 (669)
Q Consensus 247 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L 326 (669)
+.......|.++..|+.+.+..+... +...+....+|+.+.+..+ ++.... ..+..+..+
T Consensus 196 ---------~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~--------~~f~~~~~l 255 (394)
T 4fs7_A 196 ---------LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGK--------SVFYGCTDL 255 (394)
T ss_dssp ---------CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECS--------STTTTCSSC
T ss_pred ---------ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceeccc--------ccccccccc
Confidence 22222334444444444444333221 1112222334444444211 111100 123344555
Q ss_pred CEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCccccccCCCcEEecCCCcccccCchhhcCCCCCCeee
Q 040540 327 SNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILN 406 (669)
Q Consensus 327 ~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ 406 (669)
+.+.+..+... .....+ .....+.........+ ....|..+.+|+.+.++++ ++..-...|.++.+|+.++
T Consensus 256 ~~~~~~~~~~~-i~~~~F----~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~ 326 (394)
T 4fs7_A 256 ESISIQNNKLR-IGGSLF----YNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSID 326 (394)
T ss_dssp CEEEECCTTCE-ECSCTT----TTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEEC
T ss_pred eeEEcCCCcce-eecccc----ccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEE
Confidence 55555443221 111111 1122233333332221 2245667788998888765 5656667788999999999
Q ss_pred CcCCccceeCcccccCCCCCCEEECCCC
Q 040540 407 LSGNKLSGHIPPCLASLTSLRELHLGSN 434 (669)
Q Consensus 407 ls~n~l~~~~p~~l~~l~~L~~L~l~~N 434 (669)
+..+ +......+|.++.+|+.+.+..|
T Consensus 327 lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 327 LPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred eCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 9765 66666778999999999998765
No 401
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=5.9e-10 Score=114.41 Aligned_cols=102 Identities=15% Similarity=0.184 Sum_probs=58.5
Q ss_pred CCEEEEEcCCCCCcc-c-------ccccccCCCCCCEEeCCCCcCc---------ccCCcccCCCCCCCEEEccCCcCCc
Q 040540 51 QRVTALNLSDMGLGG-T-------IPLHFGNLSFLVSLDISENNFH---------GHLPKELGQLRRLRVMSLAYNKLSG 113 (669)
Q Consensus 51 ~~v~~L~ls~~~l~~-~-------~~~~~~~l~~L~~L~Ls~N~l~---------~~~p~~l~~l~~L~~L~L~~n~l~~ 113 (669)
.+|+.|.+......| . +..+...+++|+.|.+..+... +.+...+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 467788877655442 1 2334567788999988765321 123344556677777777776311
Q ss_pred cCCccccCCcccccccccccCccccCCcccC--CCCCCCeeecc
Q 040540 114 SFPSWIGVLSKLRILRLDYNNFTGPIPNSLF--NLSRLEMLRAE 155 (669)
Q Consensus 114 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~l~ 155 (669)
.++. +. +++|+.|+|..+.++......+. .+++|+.|+++
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 2333 32 66777777776665533222232 56666666654
No 402
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.77 E-value=2.1e-06 Score=89.69 Aligned_cols=316 Identities=12% Similarity=0.136 Sum_probs=163.7
Q ss_pred ccccCCC-CCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCc---CCccCCccccCCcccccccccccCccccCCcccC
Q 040540 69 LHFGNLS-FLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK---LSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLF 144 (669)
Q Consensus 69 ~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 144 (669)
.+|.+.. .|+++.+..+ ++.+-..+|.++.+|+.+.+..|. +...-...|.+..+|+.+.+..+ ++..-...|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 3566663 5888888754 666667789999999999988764 44333567888888888877654 5545556778
Q ss_pred CCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEE
Q 040540 145 NLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSGLIPPTIFNISTMRIL 224 (669)
Q Consensus 145 ~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 224 (669)
.+.+|+.+.+..+ +...-...|....+|+.+.+..+ +...-...|.. .+|+.+.+..+. +......+.+..++...
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTI 210 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEE
T ss_pred hhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhcccccee
Confidence 8888888887643 33344556777888888877644 33333334433 567777765433 22334455566666666
Q ss_pred EcccCCCccccchhhhc-------------cCCCCCeeecccCcccccCCccccCCCCCCEEeCCCCCccccCccccCCC
Q 040540 225 TLESNQLSGRLPSTIGH-------------SLRNIEYLALSTNNLIGKIPNSITNATKLIGLDLGFNSFSGHIPNTFGNL 291 (669)
Q Consensus 225 ~l~~n~l~~~~p~~~~~-------------~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 291 (669)
....+... .+...+.. ....+..+.+. +.+...-...|..+..|+.+.+..+... .-...|.+.
T Consensus 211 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c 287 (394)
T 4gt6_A 211 TSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNC 287 (394)
T ss_dssp EECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTC
T ss_pred cccccccc-cccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccce-ecCcccccc
Confidence 55444322 11111110 00111122221 1111222334455555555555433221 223344455
Q ss_pred CCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccceEeecCcccCCCCCcc
Q 040540 292 RHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIYAFELGFNDLNGTIPTS 371 (669)
Q Consensus 292 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~ 371 (669)
++|+.+.+. +.++..+. ..+.+|.+|+.+.+..+ ++..-..+
T Consensus 288 ~~L~~i~l~-~~i~~I~~--------~aF~~c~~L~~i~lp~~-----------------------------v~~I~~~a 329 (394)
T 4gt6_A 288 PALQDIEFS-SRITELPE--------SVFAGCISLKSIDIPEG-----------------------------ITQILDDA 329 (394)
T ss_dssp TTCCEEECC-TTCCEECT--------TTTTTCTTCCEEECCTT-----------------------------CCEECTTT
T ss_pred cccccccCC-CcccccCc--------eeecCCCCcCEEEeCCc-----------------------------ccEehHhH
Confidence 555555443 22222211 12344444444444221 11122234
Q ss_pred ccccCCCcEEecCCCcccccCchhhcCCCCCCeeeCcCCccceeCcccccCCCCCCEEECCCCc
Q 040540 372 IGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGHIPPCLASLTSLRELHLGSNK 435 (669)
Q Consensus 372 ~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~N~ 435 (669)
|..+.+|+.+.++.+ ++..-...|.++.+|+.+++.++.... ..+....+|+.+.+..|.
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 556666777776543 444445667777777777777665432 345555666666655443
No 403
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.70 E-value=4.1e-09 Score=108.15 Aligned_cols=132 Identities=16% Similarity=0.190 Sum_probs=70.2
Q ss_pred CCCCCEEEcccCCCcccCCcccc--CCCCCCEEEccC--CCCCCC-----CCccc--cCCCCCcEEEcccCCCccccchh
Q 040540 170 LRKLVNLGLWSCNLQGQIPTEIG--SLQNLKNLDLAD--NKLSGL-----IPPTI--FNISTMRILTLESNQLSGRLPST 238 (669)
Q Consensus 170 L~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~l~~--N~l~~~-----~p~~~--~~l~~L~~L~l~~n~l~~~~p~~ 238 (669)
+.+|++|++..|.+.......++ .+++|++|+|+. |...+. +...+ ..+++|++|++.+|.+.+..+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 45566666655554432222222 456666666542 111111 00111 23567777777777765433333
Q ss_pred hhc--cCCCCCeeecccCccccc----CCccccCCCCCCEEeCCCCCccccCccccCC-CCCCCEEEccCCc
Q 040540 239 IGH--SLRNIEYLALSTNNLIGK----IPNSITNATKLIGLDLGFNSFSGHIPNTFGN-LRHLSVLNVMMNN 303 (669)
Q Consensus 239 ~~~--~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~-l~~L~~L~l~~N~ 303 (669)
++. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++...-..+.. + ...++++.++
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 331 366788888888877653 2333345678888888888776433222221 1 3457777766
No 404
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.61 E-value=1.1e-09 Score=106.48 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=41.5
Q ss_pred CCcccccccccccCccc--cCCcccCCCCCCCeeecccccccccCCcccCCCC--CCCEEEcccCCCcccCCc-------
Q 040540 121 VLSKLRILRLDYNNFTG--PIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLR--KLVNLGLWSCNLQGQIPT------- 189 (669)
Q Consensus 121 ~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~--~L~~L~l~~n~l~~~~p~------- 189 (669)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|.+.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 34445555555555544 2233344455555555555554433 1222222 677777777777665542
Q ss_pred cccCCCCCCEEE
Q 040540 190 EIGSLQNLKNLD 201 (669)
Q Consensus 190 ~~~~l~~L~~L~ 201 (669)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356677787775
No 405
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.54 E-value=5e-06 Score=86.88 Aligned_cols=306 Identities=10% Similarity=0.085 Sum_probs=165.1
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCc---CcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccc
Q 040540 53 VTALNLSDMGLGGTIPLHFGNLSFLVSLDISENN---FHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILR 129 (669)
Q Consensus 53 v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 129 (669)
++.+.+.. +++.+-..+|.+.++|+.+.+..|. ++..-..+|..+.+|+.+.+..+ +...-...|.+..+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 56666653 3554555679999999999998763 65555677888999998888655 3434456788899999999
Q ss_pred ccccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCCCCC
Q 040540 130 LDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADNKLSG 209 (669)
Q Consensus 130 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 209 (669)
+..+ ++..-...|..+.+|+.+.+..+ +...-..+|.. .+|+.+.+..+-. ..-...|....++.......+....
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccceeccccccccc
Confidence 8654 44455567888899999888654 33233344443 5688777754432 2444556666777776655443321
Q ss_pred CCCcccc--------------CCCCCcEEEcccCCCccccchhhhccCCCCCeeecccCcccccCCccccCCCCCCEEeC
Q 040540 210 LIPPTIF--------------NISTMRILTLESNQLSGRLPSTIGHSLRNIEYLALSTNNLIGKIPNSITNATKLIGLDL 275 (669)
Q Consensus 210 ~~p~~~~--------------~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 275 (669)
. ...+. ....+..+.+..+ +. .+....+.....|+.+.+..+. .......|.++..|+.+.+
T Consensus 220 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l 295 (394)
T 4gt6_A 220 I-DNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEF 295 (394)
T ss_dssp S-SSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEEC
T ss_pred c-cceeecccccccccccccccccccceEEcCCc-ce-EcccceeeecccccEEeccccc-ceecCcccccccccccccC
Confidence 1 11100 1112222222211 11 1222333345666666665432 2233455666677777776
Q ss_pred CCCCccccCccccCCCCCCCEEEccCCccccCCCCCcccccccccCCCCCCCEEECcCCCCccccchhHhhhhccccccc
Q 040540 276 GFNSFSGHIPNTFGNLRHLSVLNVMMNNLTTESSSADQWSFLSSLTNCRNLSNLALASNPLGGILPQLIGNFSASLQNIY 355 (669)
Q Consensus 276 s~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~ 355 (669)
.. .+...-..+|.++.+|+.+.+..+ ++.... ..+.+|.+|+.+.+..+ +..+.... +....+|.
T Consensus 296 ~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~--------~aF~~C~~L~~i~ip~s-v~~I~~~a----F~~C~~L~ 360 (394)
T 4gt6_A 296 SS-RITELPESVFAGCISLKSIDIPEG-ITQILD--------DAFAGCEQLERIAIPSS-VTKIPESA----FSNCTALN 360 (394)
T ss_dssp CT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT--------TTTTTCTTCCEEEECTT-CCBCCGGG----GTTCTTCC
T ss_pred CC-cccccCceeecCCCCcCEEEeCCc-ccEehH--------hHhhCCCCCCEEEECcc-cCEEhHhH----hhCCCCCC
Confidence 53 333334456666777777766432 332221 23556677777766543 33222222 22345566
Q ss_pred eEeecCcccCCCCCccccccCCCcEEecCCC
Q 040540 356 AFELGFNDLNGTIPTSIGTLQQLQGFYVPEN 386 (669)
Q Consensus 356 ~l~l~~n~l~~~~~~~~~~l~~L~~l~l~~n 386 (669)
.+++..+.... ..+.....|+.+.++.+
T Consensus 361 ~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 361 NIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EEEESSCHHHH---HTCBCCCCC--------
T ss_pred EEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 66665443221 22334445555555444
No 406
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.39 E-value=5e-08 Score=94.80 Aligned_cols=80 Identities=24% Similarity=0.291 Sum_probs=48.1
Q ss_pred CCCCCCCEEEccCCcCCc--cCCccccCCcccccccccccCccccCCcccCCCC--CCCeeecccccccccCCc------
Q 040540 96 GQLRRLRVMSLAYNKLSG--SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLS--RLEMLRAEFNIIGGTIPS------ 165 (669)
Q Consensus 96 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~l~~n~l~~~~p~------ 165 (669)
.++++|+.|+|++|++++ .+|..+..+++|++|+|++|+|++. ..+..+. +|++|++++|.+.+..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 345666666666666665 3445556666667777776666643 2233333 677777777776665542
Q ss_pred -ccCCCCCCCEEE
Q 040540 166 -RIGNLRKLVNLG 177 (669)
Q Consensus 166 -~~~~L~~L~~L~ 177 (669)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 255667777664
No 407
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.33 E-value=4.1e-08 Score=90.81 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=37.3
Q ss_pred ccccCCCCCCEEeCCCC-cCccc----CCcccCCCCCCCEEEccCCcCCcc----CCccccCCcccccccccccCcc
Q 040540 69 LHFGNLSFLVSLDISEN-NFHGH----LPKELGQLRRLRVMSLAYNKLSGS----FPSWIGVLSKLRILRLDYNNFT 136 (669)
Q Consensus 69 ~~~~~l~~L~~L~Ls~N-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~ 136 (669)
..+...+.|++|+|++| .+... +...+...+.|++|+|++|.+... +.+.+...++|++|+|++|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34555666677777766 65432 233345556666666666666421 2233344455666666666654
No 408
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=98.30 E-value=7.5e-08 Score=95.56 Aligned_cols=106 Identities=12% Similarity=0.088 Sum_probs=75.5
Q ss_pred ccCchhhhhhccccccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCC
Q 040540 447 RSFDSECEVLRNVRHRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSA 526 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~ 526 (669)
..+..|+.++..++ | +++++.+. .+..++||||+++|+|.+ +.. . +...++.++++|+.|||. .
T Consensus 149 ~~~~~E~~~l~~l~--~-~~v~~~~~-~~~~~lvmE~~~g~~L~~-l~~-----~--~~~~i~~qi~~~l~~lH~----~ 212 (282)
T 1zar_A 149 RSARNEFRALQKLQ--G-LAVPKVYA-WEGNAVLMELIDAKELYR-VRV-----E--NPDEVLDMILEEVAKFYH----R 212 (282)
T ss_dssp HHHHHHHHHHHHTT--T-SSSCCEEE-EETTEEEEECCCCEEGGG-CCC-----S--CHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHhcc--C-CCcCeEEe-ccceEEEEEecCCCcHHH-cch-----h--hHHHHHHHHHHHHHHHHH----C
Confidence 34668999999888 4 66666543 456699999999999998 532 1 234699999999999994 4
Q ss_pred CeeecCCCCccccc-----------ccccccccCccccccC----------CCcCccccchhh
Q 040540 527 PIIHCEGEDSVTQT-----------TTMATIGYMAPEYGSE----------GIVSAKCDVYSY 568 (669)
Q Consensus 527 ~i~h~d~~~~~~~~-----------~~~gt~~y~aPE~~~~----------~~~~~~~Dv~s~ 568 (669)
+|+|||+|+..... ....+..|+|||++.+ .+|+.++|+|.+
T Consensus 213 giiHrDlkp~NILl~~~~vkl~DFG~a~~~~~~~a~e~l~rdv~~i~~~f~~~~~~~~~~~~~ 275 (282)
T 1zar_A 213 GIVHGDLSQYNVLVSEEGIWIIDFPQSVEVGEEGWREILERDVRNIITYFSRTYRTEKDINSA 275 (282)
T ss_dssp TEECSCCSTTSEEEETTEEEECCCTTCEETTSTTHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred CCEeCCCCHHHEEEECCcEEEEECCCCeECCCCCHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Confidence 89999999763211 1124667899998753 345566666643
No 409
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.16 E-value=2.2e-07 Score=85.87 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=69.2
Q ss_pred CcccCCCCCCCEEEccCC-cCCc----cCCccccCCcccccccccccCccccCCcccCCCCCCCeeecccccccccCCcc
Q 040540 92 PKELGQLRRLRVMSLAYN-KLSG----SFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSR 166 (669)
Q Consensus 92 p~~l~~l~~L~~L~L~~n-~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 166 (669)
...+...+.|++|+|++| .+.. .+...+...++|++|+|++|.+...-.. .+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~--------------------~l~~~ 88 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF--------------------ALAEM 88 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH--------------------HHHHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH--------------------HHHHH
Confidence 344566778888888887 7653 1234445556677777777766521110 11222
Q ss_pred cCCCCCCCEEEcccCCCccc----CCccccCCCCCCEEEc--cCCCCCCC----CCccccCCCCCcEEEcccCCCc
Q 040540 167 IGNLRKLVNLGLWSCNLQGQ----IPTEIGSLQNLKNLDL--ADNKLSGL----IPPTIFNISTMRILTLESNQLS 232 (669)
Q Consensus 167 ~~~L~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l--~~N~l~~~----~p~~~~~l~~L~~L~l~~n~l~ 232 (669)
+...++|++|+|++|.+... +...+...++|++|+| ++|.++.. +...+...++|++|++++|.+.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 33334555566666655432 3344555566777777 66776643 2234445577888888888764
No 410
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.13 E-value=0.00018 Score=74.54 Aligned_cols=121 Identities=8% Similarity=0.004 Sum_probs=66.0
Q ss_pred CEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCccccccccc
Q 040540 52 RVTALNLSDMGLGGTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLD 131 (669)
Q Consensus 52 ~v~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 131 (669)
+++.+.+. .+++.+-..+|.+..+|+.++|..+ ++..-..+|.++ +|+.+.+..+ +...-...|.. .+|+.+.+.
T Consensus 47 ~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFP 121 (379)
T ss_dssp GCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECC
T ss_pred CCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCC
Confidence 45666664 3455444567888889999988754 665556667776 5777776543 33222334444 467777776
Q ss_pred ccCccccCCcccCCCCCCCeeecccccccccCCcccCCCCCCCEEEccc
Q 040540 132 YNNFTGPIPNSLFNLSRLEMLRAEFNIIGGTIPSRIGNLRKLVNLGLWS 180 (669)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~ 180 (669)
.+ ++..-...|.+ .+|+.+.+..+ +...-...+....+++...+..
T Consensus 122 ~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 122 GA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp TT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred Cc-ccccccccccc-ceeeeeeccce-eeccccchhccccccccccccc
Confidence 54 22222222333 24544444322 2223334455566666655543
No 411
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.12 E-value=0.0008 Score=69.52 Aligned_cols=127 Identities=6% Similarity=-0.075 Sum_probs=68.6
Q ss_pred ccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCccccCCcccCCCCCCC
Q 040540 71 FGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFTGPIPNSLFNLSRLE 150 (669)
Q Consensus 71 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 150 (669)
+....+|+.+.+.. .++.+...+|.++.+|+.++|..+ +...-...|.+. +|+.+.+..+ ++..-...|. ..+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~-~~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQ-GTDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTT-TCCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceec-cCCcc
Confidence 55667888888875 466566677999999999999754 543444566665 5666665433 4422223333 34677
Q ss_pred eeecccccccccCCcccCCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCC
Q 040540 151 MLRAEFNIIGGTIPSRIGNLRKLVNLGLWSCNLQGQIPTEIGSLQNLKNLDLADN 205 (669)
Q Consensus 151 ~L~l~~n~l~~~~p~~~~~L~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N 205 (669)
.+.+..+. ...-...|.+. +|+...+.. .++..-...|....+++...+..+
T Consensus 117 ~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 117 DFEFPGAT-TEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp EEECCTTC-CEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTT
T ss_pred cccCCCcc-ccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccc
Confidence 77665432 11122223322 344443332 222233344555555665555443
No 412
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.53 E-value=2.1e-05 Score=70.61 Aligned_cols=61 Identities=8% Similarity=0.072 Sum_probs=32.4
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCc-CCccCCccccCC----cccccccccccC-cc
Q 040540 76 FLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNK-LSGSFPSWIGVL----SKLRILRLDYNN-FT 136 (669)
Q Consensus 76 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~ 136 (669)
.|++||++++.++..--..+..+++|+.|+|++|. ++..--..+..+ ++|++|+|++|. +|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 46666666666554444445566666666666664 432222223333 246666666653 44
No 413
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.32 E-value=5.6e-05 Score=67.86 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=14.7
Q ss_pred CCCEEEccCCcCCccCCccccCCccccccccccc
Q 040540 100 RLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYN 133 (669)
Q Consensus 100 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 133 (669)
+|+.||++++.++..--..+.++++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555544322222334444444444443
No 414
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=96.81 E-value=0.00015 Score=70.53 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=55.5
Q ss_pred cCchhhhhhccccccccc--eeccccccccccceeeccCCC-C----ChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhh
Q 040540 448 SFDSECEVLRNVRHRNLI--KIISSCSNPDFKALVLEFMPN-G----SLEKWLYSHNYFLDILERLNIMIDVGSALEYLR 520 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~niv--~l~~~~~~~~~~~lv~ey~~~-g----~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh 520 (669)
.+..|+..+..+.|+++. ..+. ....++||||+.+ | +|.++... .++.....++.++++|+.|||
T Consensus 116 ~~~~E~~~l~~l~~~~i~~p~~~~----~~~~~lVmE~~g~~g~~~~~L~~~~~~----~~~~~~~~i~~qi~~~l~~lH 187 (258)
T 1zth_A 116 WTEKEFRNLERAKEAGVSVPQPYT----YMKNVLLMEFIGEDELPAPTLVELGRE----LKELDVEGIFNDVVENVKRLY 187 (258)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCEEE----EETTEEEEECCEETTEECCBHHHHGGG----GGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEE----cCCCEEEEEecCCCCCccccHHHHhhc----cChHHHHHHHHHHHHHHHHHH
Confidence 456788889888887642 2222 2456899999942 4 67666532 223456789999999999999
Q ss_pred cCCCCCCeeecCCCCcc
Q 040540 521 HGHSSAPIIHCEGEDSV 537 (669)
Q Consensus 521 ~~~~~~~i~h~d~~~~~ 537 (669)
.. .+|+|||+|+..
T Consensus 188 ~~---~givHrDlkp~N 201 (258)
T 1zth_A 188 QE---AELVHADLSEYN 201 (258)
T ss_dssp HT---SCEECSSCSTTS
T ss_pred HH---CCEEeCCCCHHH
Confidence 32 379999999764
No 415
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.52 E-value=0.0034 Score=53.53 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=36.0
Q ss_pred EEEcCCCCCc-ccccccccCCCCCCEEeCCCCcCcccCCcccCCCCCCCEEEccCCcCC
Q 040540 55 ALNLSDMGLG-GTIPLHFGNLSFLVSLDISENNFHGHLPKELGQLRRLRVMSLAYNKLS 112 (669)
Q Consensus 55 ~L~ls~~~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 112 (669)
.++.++++++ ..+|..+. .+|++|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5777777775 34553322 35777777777777655666677777777777777653
No 416
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.19 E-value=0.0089 Score=50.87 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=47.2
Q ss_pred CEEeCCCCcCc-ccCCcccCCCCCCCEEEccCCcCCccCCccccCCcccccccccccCcc
Q 040540 78 VSLDISENNFH-GHLPKELGQLRRLRVMSLAYNKLSGSFPSWIGVLSKLRILRLDYNNFT 136 (669)
Q Consensus 78 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 136 (669)
.+++.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47889999886 35665443 46999999999999777788999999999999999886
No 417
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.16 E-value=0.0011 Score=60.63 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=32.8
Q ss_pred cCCCCCCEEeCCCC-cCccc----CCcccCCCCCCCEEEccCCcCCc----cCCccccCCcccccccccccCcc
Q 040540 72 GNLSFLVSLDISEN-NFHGH----LPKELGQLRRLRVMSLAYNKLSG----SFPSWIGVLSKLRILRLDYNNFT 136 (669)
Q Consensus 72 ~~l~~L~~L~Ls~N-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~ 136 (669)
.+-+.|++|+|++| .+... +-..+..-+.|+.|+|++|++.. .+.+.+..-+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34455666666654 44321 22334455566666666666542 12233334455666666666554
No 418
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=95.92 E-value=0.0021 Score=65.64 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=39.3
Q ss_pred cceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcCCCCCCeeecCCCCcc
Q 040540 477 KALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHGHSSAPIIHCEGEDSV 537 (669)
Q Consensus 477 ~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~i~h~d~~~~~ 537 (669)
.+|||||++++++.++... + ....++.+++.++.|+|. .+|||||+|+..
T Consensus 186 ~~LVME~i~G~~L~~l~~~-----~--~~~~l~~qll~~l~~lH~----~gIVHrDLKp~N 235 (397)
T 4gyi_A 186 HTIVMSLVDALPMRQVSSV-----P--DPASLYADLIALILRLAK----HGLIHGDFNEFN 235 (397)
T ss_dssp TEEEEECCSCEEGGGCCCC-----S--CHHHHHHHHHHHHHHHHH----TTEECSCCSTTS
T ss_pred ceEEEEecCCccHhhhccc-----H--HHHHHHHHHHHHHHHHHH----CCCcCCCCCHHH
Confidence 3699999999888766432 1 234678999999999995 479999999764
No 419
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.80 E-value=0.0014 Score=59.91 Aligned_cols=84 Identities=13% Similarity=0.157 Sum_probs=61.5
Q ss_pred CCCEEEEEcCCC-CCccc----ccccccCCCCCCEEeCCCCcCccc----CCcccCCCCCCCEEEccCCcCCcc----CC
Q 040540 50 HQRVTALNLSDM-GLGGT----IPLHFGNLSFLVSLDISENNFHGH----LPKELGQLRRLRVMSLAYNKLSGS----FP 116 (669)
Q Consensus 50 ~~~v~~L~ls~~-~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p 116 (669)
...++.|+|+++ ++... +...+..-+.|+.|+|++|.+... +...+..-+.|+.|+|++|.|... +-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 357899999985 77532 345577778999999999999743 333455678899999999999742 23
Q ss_pred ccccCCccccccccccc
Q 040540 117 SWIGVLSKLRILRLDYN 133 (669)
Q Consensus 117 ~~~~~l~~L~~L~L~~n 133 (669)
+.+..-+.|++|+|++|
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 44555567888888765
No 420
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=94.03 E-value=0.14 Score=47.09 Aligned_cols=95 Identities=12% Similarity=0.062 Sum_probs=56.5
Q ss_pred CCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc-CCCCC-------CeeecCCCCcccccc-cccccccCccccccC
Q 040540 486 NGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH-GHSSA-------PIIHCEGEDSVTQTT-TMATIGYMAPEYGSE 556 (669)
Q Consensus 486 ~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~-------~i~h~d~~~~~~~~~-~~gt~~y~aPE~~~~ 556 (669)
+-+|.+.|...+.++.+.+...+..|.++++.-.-. ..... -.+|+|..-...... ......+.+||...
T Consensus 32 ~vSL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~~~~~~~i~~~~~i~l~~dG~V~f~~~~s~~~~~~~~~pe~~~- 110 (229)
T 2yle_A 32 ALSLEEILRLYNQPINEEQAWAVCYQCCGSLRAAARRRQPRHRVRSAAQIRVWRDGAVTLAPAADDAGEPPPVAGKLGY- 110 (229)
T ss_dssp EEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSGGGEEEETTSCEEECCC------------CCSS-
T ss_pred cccHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccCCceecCCcceEEecCCceecccccccccccCCCChhhcc-
Confidence 458999999888999999999999999988866511 00001 123444332211111 12234466888653
Q ss_pred CCcCccccchhhHHHHHHHHhCCCC
Q 040540 557 GIVSAKCDVYSYGVLLMETFTRKRP 581 (669)
Q Consensus 557 ~~~~~~~Dv~s~Gvil~el~tg~~p 581 (669)
...+.+.=|||+|+++|.-+--..|
T Consensus 111 ~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 111 SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 3356889999999999998875554
No 421
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=87.39 E-value=0.19 Score=48.27 Aligned_cols=68 Identities=6% Similarity=0.009 Sum_probs=50.2
Q ss_pred cCchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|...+..+. +..+.++++++......++||||++|.++.+.+.. ......++.++++++..||.
T Consensus 55 ~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~~------~~~~~~~~~~l~~~l~~LH~ 123 (263)
T 3tm0_A 55 DVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYED------EQSPEKIIELYAECIRLFHS 123 (263)
T ss_dssp CHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHHHHCCT------TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEecCCeehhhccCC------cccHHHHHHHHHHHHHHHhC
Confidence 4667888887774 56667788877777778999999999999876421 11234677888888888886
No 422
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=75.39 E-value=1.4 Score=41.69 Aligned_cols=66 Identities=14% Similarity=0.127 Sum_probs=43.2
Q ss_pred ccCchhhhhhccccccc--cceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 447 RSFDSECEVLRNVRHRN--LIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
..+..|...+..+.+.+ +.+++++....+..++||||+++.++. ... .+ ...++.++++.+..+|.
T Consensus 58 ~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~--~~~----~~---~~~~~~~l~~~l~~lh~ 125 (264)
T 1nd4_A 58 NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL--SSH----LA---PAEKVSIMADAMRRLHT 125 (264)
T ss_dssp SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT--TSC----CC---HHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC--cCc----CC---HhHHHHHHHHHHHHHhC
Confidence 34567888888776544 344667666666678999999998884 211 11 22456667777777774
No 423
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=70.36 E-value=2.7 Score=42.25 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=52.0
Q ss_pred cCchhhhhhcccc--ccccceeccccccc---cccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVR--HRNLIKIISSCSNP---DFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~--h~niv~l~~~~~~~---~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|..++..+. +..+.++++.+... +..++||||+++..+.+... ..++..++..++.++++.|..||.
T Consensus 82 ~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme~v~G~~l~~~~~---~~l~~~~~~~~~~~l~~~La~LH~ 157 (359)
T 3dxp_A 82 AIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIMEFVSGRVLWDQSL---PGMSPAERTAIYDEMNRVIAAMHT 157 (359)
T ss_dssp CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEECCCCBCCCCTTC---TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEEecCCeecCCCcc---ccCCHHHHHHHHHHHHHHHHHHhC
Confidence 4566888887776 34466777777655 34789999999877754221 236777888899999999999996
No 424
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=36.72 E-value=27 Score=34.03 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=46.2
Q ss_pred cCchhhhhhccccc----cccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 448 SFDSECEVLRNVRH----RNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 448 ~~~~e~~~l~~l~h----~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
.+..|...+..+.+ ..+.++++. +..++||||+++.++.+... ..++..++..++.++++.+..||..
T Consensus 73 ~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme~i~G~~l~~~~~---~~l~~~~~~~~~~~l~~~La~LH~~ 144 (320)
T 3r70_A 73 SQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMKYIKGERITYEQY---HKLSEKEKDALAYDEATFLKELHSI 144 (320)
T ss_dssp HHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEECCCCBCCCHHHH---TTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEeecCCcccccccc---ccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 35667777766654 112233333 45689999999988864432 1256677888999999999999954
No 425
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=30.66 E-value=35 Score=33.05 Aligned_cols=72 Identities=8% Similarity=-0.029 Sum_probs=48.7
Q ss_pred cCchhhhhhcccccc---ccceeccccc-cccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 448 SFDSECEVLRNVRHR---NLIKIISSCS-NPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 448 ~~~~e~~~l~~l~h~---niv~l~~~~~-~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
.+..|...+..+.+. .+.+.+.++. ..+..+++|||++|..+.+.... .++..++..++.++++.+..||..
T Consensus 55 ~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~l~~~~~~---~l~~~~~~~~~~~lg~~La~LH~~ 130 (306)
T 3tdw_A 55 ELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQILGEDGMA---VLPDDAKDRLALQLAEFMNELSAF 130 (306)
T ss_dssp HHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSEECHHHHHT---TSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCeECchhhhh---hCCHHHHHHHHHHHHHHHHHHhcC
Confidence 456788888877643 2333444442 34456799999999888764321 246677788888999999999853
No 426
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=27.94 E-value=22 Score=33.50 Aligned_cols=70 Identities=19% Similarity=0.029 Sum_probs=47.5
Q ss_pred cCchhhhhhcccc-ccccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 448 SFDSECEVLRNVR-HRNLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 448 ~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
.+..|...++.+. +--+.++++++..++..++|||++++.++.+..... ...+..+..++++.+.-||..
T Consensus 65 ~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~~~~~~~~-----~~~~~~~~~~l~~~L~~Lh~~ 135 (272)
T 4gkh_A 65 DVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEY-----PDSGENIVDALAVFLRRLHSI 135 (272)
T ss_dssp HHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEHHHHHHHC-----GGGHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccccccccCC-----HHHHHHHHHHHHHHHHHhcCC
Confidence 3455666665553 223456677777777789999999998887765431 123446778888999999853
No 427
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=27.29 E-value=42 Score=32.28 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=46.8
Q ss_pred cCchhhhhhcccc-ccc--cceecccccccc---ccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhc
Q 040540 448 SFDSECEVLRNVR-HRN--LIKIISSCSNPD---FKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRH 521 (669)
Q Consensus 448 ~~~~e~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~ 521 (669)
.+..|...+..+. +.. +.+++....... ..++||||++|.++.+... ..++..++..++.++++.+..||.
T Consensus 56 ~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G~~l~~~~~---~~l~~~~~~~~~~~l~~~la~LH~ 132 (304)
T 3sg8_A 56 NLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPLTPLLL---NNLPKQSQNQAAKDLARFLSELHS 132 (304)
T ss_dssp HHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCCEECCHHHH---HTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCCeECCcccc---ccCCHHHHHHHHHHHHHHHHHHHc
Confidence 4566777777663 222 223333333222 3478999999988865433 236777888899999999999995
No 428
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=25.03 E-value=37 Score=33.54 Aligned_cols=75 Identities=12% Similarity=0.023 Sum_probs=47.6
Q ss_pred cCchhhhhhccccc---cccceeccccccc---cccceeeccCCCCChHHhhhcC---C--CccCHHHHHHHHHhHHhhh
Q 040540 448 SFDSECEVLRNVRH---RNLIKIISSCSNP---DFKALVLEFMPNGSLEKWLYSH---N--YFLDILERLNIMIDVGSAL 516 (669)
Q Consensus 448 ~~~~e~~~l~~l~h---~niv~l~~~~~~~---~~~~lv~ey~~~g~L~~~l~~~---~--~~l~~~~~~~i~~~i~~~l 516 (669)
.+..|...+..+.. ..+.++++++... ...++||||+++..+.+.+... . ..++..++..++.++++.+
T Consensus 73 ~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~g~~~~v~e~l~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 152 (357)
T 3ats_A 73 RLDHQFEVIRLVGELTDVPVPRVRWIETTGDVLGTPFFLMDYVEGVVPPDVMPYTFGDNWFADAPAERQRQLQDATVAAL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTTSSCEEEEECCCCBCCCBTTBGGGSCSTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCCcEEEEccCCCccCCceEEEEecCCCChhhcCcccccccccCCCCHHHHHHHHHHHHHHH
Confidence 45567777776643 2345566665543 3457999999987776543110 0 0245566677888999999
Q ss_pred hhhhcC
Q 040540 517 EYLRHG 522 (669)
Q Consensus 517 ~~lh~~ 522 (669)
.-||..
T Consensus 153 a~LH~~ 158 (357)
T 3ats_A 153 ATLHSI 158 (357)
T ss_dssp HHHTTC
T ss_pred HHHhCC
Confidence 999853
No 429
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=22.80 E-value=29 Score=19.23 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhHHHhhhhhhc
Q 040540 647 MTDAAAKLKKIKVKFLDDVAA 667 (669)
Q Consensus 647 ~~~v~~~l~~~~~~~~~~~~~ 667 (669)
|+||++.++.+.++-.+.+.|
T Consensus 4 MkDvlql~qQy~qsh~qa~rA 24 (26)
T 1kdl_A 4 MKDVLRLIEQYVSSHTHAMKX 24 (26)
T ss_dssp HHHHHHHHHHHTTTTCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 778888888776665554444
No 430
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=20.51 E-value=49 Score=31.67 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=39.7
Q ss_pred ccCchhhhhhcccccc---ccceeccccccccccceeeccCCCCChHHhhhcCCCccCHHHHHHHHHhHHhhhhhhhcC
Q 040540 447 RSFDSECEVLRNVRHR---NLIKIISSCSNPDFKALVLEFMPNGSLEKWLYSHNYFLDILERLNIMIDVGSALEYLRHG 522 (669)
Q Consensus 447 ~~~~~e~~~l~~l~h~---niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~i~~~i~~~l~~lh~~ 522 (669)
..+..|...++.+++. .+.++++.. ..++||||++++.+.. ....++++.|+-||..
T Consensus 56 ~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~g~~~~~---------------~~~~~lg~~LA~LH~~ 115 (288)
T 3d1u_A 56 GLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDERPPTP---------------EAAERFGHQLAAMHLA 115 (288)
T ss_dssp THHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCCCCCCH---------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEecccCCCCh---------------HHHHHHHHHHHHHHcC
Confidence 3467899999888765 345555442 3689999999876421 2356788889999964
Done!