Query 040541
Match_columns 69
No_of_seqs 101 out of 115
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 15:06:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kv5_A FST, putative uncharact 31.9 21 0.00071 19.2 1.3 10 5-14 10-19 (33)
2 3arc_L Photosystem II reaction 18.0 1.2E+02 0.004 16.6 2.7 16 48-63 15-30 (37)
3 3lti_A DNA-directed RNA polyme 14.4 79 0.0027 23.4 1.8 8 17-24 4-11 (296)
4 1e6y_B Methyl-coenzyme M reduc 12.5 41 0.0014 26.6 -0.2 29 21-50 108-139 (433)
5 1v54_D Cytochrome C oxidase su 11.6 91 0.0031 21.0 1.3 19 2-20 76-94 (147)
6 1hbn_B Methyl-coenzyme M reduc 11.6 45 0.0016 26.4 -0.2 29 21-50 111-142 (442)
7 1cse_I Eglin C; complex(serine 11.4 49 0.0017 19.1 -0.1 8 33-40 2-9 (70)
8 1xd7_A YWNA; structural genomi 11.1 1.4E+02 0.0049 18.2 2.1 18 36-53 2-19 (145)
9 2y69_D Cytochrome C oxidase su 9.1 1.2E+02 0.0043 20.8 1.3 18 2-19 98-115 (169)
10 4eai_A 5'-AMP-activated protei 8.2 1.1E+02 0.0037 19.4 0.6 41 22-62 63-104 (106)
No 1
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=31.87 E-value=21 Score=19.17 Aligned_cols=10 Identities=40% Similarity=0.903 Sum_probs=8.4
Q ss_pred hhHHHHHHHH
Q 040541 5 GPVFVAVILF 14 (69)
Q Consensus 5 gPV~i~vvLF 14 (69)
||+++|++|=
T Consensus 10 aPivVGvvl~ 19 (33)
T 2kv5_A 10 APIFVGLVLE 19 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7999999874
No 2
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=17.96 E-value=1.2e+02 Score=16.57 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 040541 48 SLLYFALVCVFFLAVK 63 (69)
Q Consensus 48 a~ifF~l~~if~~ai~ 63 (69)
|-+|.+++.||.+|+-
T Consensus 15 TSLy~GLLlifvlavl 30 (37)
T 3arc_L 15 TSLYLGLLLILVLALL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4478888888888763
No 3
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=14.41 E-value=79 Score=23.37 Aligned_cols=8 Identities=50% Similarity=1.286 Sum_probs=7.0
Q ss_pred hccceeEE
Q 040541 17 LSPGLLFQ 24 (69)
Q Consensus 17 LsPGLLfQ 24 (69)
+|||.-|+
T Consensus 4 ~SPGv~f~ 11 (296)
T 3lti_A 4 MSPGVFFD 11 (296)
T ss_dssp CCCEEEEE
T ss_pred CCCEEEEe
Confidence 69999997
No 4
>1e6y_B Methyl-coenzyme M reductase I beta subunit; biological methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET: MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP: a.89.1.1 d.58.31.2
Probab=12.47 E-value=41 Score=26.64 Aligned_cols=29 Identities=34% Similarity=0.547 Sum_probs=23.8
Q ss_pred eeEEecCCCce---eeeecccchHHHHHHHHHH
Q 040541 21 LLFQVPGRHRC---VEFGNFQTSGAAIMVHSLL 50 (69)
Q Consensus 21 LLfQ~PG~~r~---veFgn~~Tsg~si~vHa~i 50 (69)
+|.|+|-+ |. -||-.--|+..+.++|++|
T Consensus 108 llvqvPs~-R~~~aa~y~~~~~~~a~A~~~aIi 139 (433)
T 1e6y_B 108 LLIQSPKS-RIIAGADFMSATTVGAAAVTQTIM 139 (433)
T ss_dssp EEEECCHH-HHHTSSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HhhhhhhhhHHHHHHHHHHHHHHH
Confidence 78999944 54 6888888999999999987
No 5
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=11.62 E-value=91 Score=20.98 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=13.1
Q ss_pred CCchhHHHHHHHHHHhccc
Q 040541 2 SDWGPVFVAVILFVLLSPG 20 (69)
Q Consensus 2 ~DWgPV~i~vvLFvlLsPG 20 (69)
.+|.+|+-++.+|+-+|=+
T Consensus 76 gewK~v~g~v~~~i~~s~~ 94 (147)
T 1v54_D 76 NEWKTVVGAAMFFIGFTAL 94 (147)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 4688888777777766533
No 6
>1hbn_B Methyl-coenzyme M reductase I beta subunit; methanogenesis, biological methanogenesis, NI-enzyme, oxidoreductase; HET: MHS AGM MGN F43 TP7; 1.16A {Methanothermobacterthermautotrophicus} SCOP: a.89.1.1 d.58.31.2 PDB: 1hbm_B* 1hbo_B* 1hbu_B* 1mro_B* 3m1v_B* 3m2r_B* 3m2u_B* 3m2v_B* 3m30_B* 3m32_B* 3pot_B* 1e6v_B*
Probab=11.60 E-value=45 Score=26.45 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=23.8
Q ss_pred eeEEecCCCce---eeeecccchHHHHHHHHHH
Q 040541 21 LLFQVPGRHRC---VEFGNFQTSGAAIMVHSLL 50 (69)
Q Consensus 21 LLfQ~PG~~r~---veFgn~~Tsg~si~vHa~i 50 (69)
+|.|+|-+ |. -||----|+..+.++|++|
T Consensus 111 llvqvPs~-R~~~aa~y~~~~~~~a~A~~~aii 142 (442)
T 1hbn_B 111 ALVQVPSA-RFDVAAEYSAAPLVTATAFVQAII 142 (442)
T ss_dssp EEEECCHH-HHHTCSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HhhhhcchhHHHHHHHHHHHHHHH
Confidence 78999954 54 6888888999999999987
No 7
>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B
Probab=11.39 E-value=49 Score=19.14 Aligned_cols=8 Identities=50% Similarity=0.621 Sum_probs=1.4
Q ss_pred eeecccch
Q 040541 33 EFGNFQTS 40 (69)
Q Consensus 33 eFgn~~Ts 40 (69)
|||+.|||
T Consensus 2 ~~~~~k~s 9 (70)
T 1cse_I 2 EFGSELKS 9 (70)
T ss_dssp ------CB
T ss_pred CcCCCCCc
Confidence 78888876
No 8
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=11.06 E-value=1.4e+02 Score=18.25 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=11.5
Q ss_pred cccchHHHHHHHHHHHHH
Q 040541 36 NFQTSGAAIMVHSLLYFA 53 (69)
Q Consensus 36 n~~Tsg~si~vHa~ifF~ 53 (69)
.|+|+....-+|+++|.+
T Consensus 2 ~M~s~~~~yAl~~L~~La 19 (145)
T 1xd7_A 2 SLINSRLAVAIHILSLIS 19 (145)
T ss_dssp ----CHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 467777888899988865
No 9
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=9.11 E-value=1.2e+02 Score=20.79 Aligned_cols=18 Identities=22% Similarity=0.621 Sum_probs=12.7
Q ss_pred CCchhHHHHHHHHHHhcc
Q 040541 2 SDWGPVFVAVILFVLLSP 19 (69)
Q Consensus 2 ~DWgPV~i~vvLFvlLsP 19 (69)
.+|.+|+-++.+|+-+|=
T Consensus 98 gEWK~V~ggv~~~i~~s~ 115 (169)
T 2y69_D 98 NEWKTVVGAAMFFIGFTA 115 (169)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 468888877777766553
No 10
>4eai_A 5'-AMP-activated protein kinase catalytic subunit linker, 5'-AMP-activated protein...; AMPK, transferase; HET: AMP; 2.29A {Rattus norvegicus} PDB: 4eaj_A* 4eak_A* 4eal_A*
Probab=8.15 E-value=1.1e+02 Score=19.38 Aligned_cols=41 Identities=20% Similarity=0.415 Sum_probs=29.0
Q ss_pred eEEecCCCceeeeecccchHH-HHHHHHHHHHHHHHHHHHHh
Q 040541 22 LFQVPGRHRCVEFGNFQTSGA-AIMVHSLLYFALVCVFFLAV 62 (69)
Q Consensus 22 LfQ~PG~~r~veFgn~~Tsg~-si~vHa~ifF~l~~if~~ai 62 (69)
|+|++-++--+||-++..+.. +--=|+.+||=+++-++..+
T Consensus 63 LYkv~~~~YLLDfq~i~g~~~~~~~~~~~~F~d~ca~li~~l 104 (106)
T 4eai_A 63 LYQVDSRTYLLDFRSIDDGGGGGGGSHTIEFFEMCANLIKIL 104 (106)
T ss_dssp EEECSSSCEEEEEEECCSSCCCSSSCHHHHHHHHHHHHHHHC
T ss_pred EEEecCCcEEEEEEeccCCCCCCCCcCcEeHHHHHHHHHHHH
Confidence 788987777899988877310 01136899999988877653
Done!