Query 040541
Match_columns 69
No_of_seqs 101 out of 115
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 15:07:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040541.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040541hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 32.2 20 0.0015 18.4 2.7 17 47-63 14-30 (37)
2 d1hbnb2 d.58.31.2 (B:2-188) Be 25.8 7.1 0.00052 26.2 0.1 29 21-50 111-142 (187)
3 d1uf3a_ d.159.1.6 (A:) Hypothe 20.0 19 0.0014 20.2 1.3 15 22-38 214-228 (228)
4 d1e32a3 d.31.1.1 (A:107-200) M 17.1 24 0.0017 20.8 1.2 24 17-40 40-63 (94)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 15.7 58 0.0043 15.7 2.3 15 48-62 7-21 (30)
6 d1jb0m_ f.23.19.1 (M:) Subunit 12.4 23 0.0017 17.5 0.1 12 11-22 10-21 (31)
7 d1tmka_ c.37.1.1 (A:) Thymidyl 11.7 76 0.0055 18.9 2.5 23 27-49 1-23 (214)
8 d1rqpa1 b.141.1.1 (A:193-298) 10.3 18 0.0013 20.7 -0.9 15 28-42 13-29 (106)
9 d1e6yb2 d.58.31.2 (B:2002-2185 10.0 20 0.0015 23.8 -0.8 29 21-50 108-139 (184)
10 d1e6vb2 d.58.31.2 (B:7-189) Be 9.7 29 0.0021 23.0 -0.1 30 21-50 107-138 (183)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=32.21 E-value=20 Score=18.35 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 040541 47 HSLLYFALVCVFFLAVK 63 (69)
Q Consensus 47 Ha~ifF~l~~if~~ai~ 63 (69)
+|-+|.+++.||.+++-
T Consensus 14 rtsLy~GlLlifvl~vL 30 (37)
T d2axtl1 14 RTSLYLGLLLILVLALL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 45678888888888763
No 2
>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=25.75 E-value=7.1 Score=26.23 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=24.2
Q ss_pred eeEEecCCCc---eeeeecccchHHHHHHHHHH
Q 040541 21 LLFQVPGRHR---CVEFGNFQTSGAAIMVHSLL 50 (69)
Q Consensus 21 LLfQ~PG~~r---~veFgn~~Tsg~si~vHa~i 50 (69)
+|.|+|-+ | --||..--|+..+.++|++|
T Consensus 111 llvqvPs~-Ri~~aa~Y~v~~t~~~~A~~~aIi 142 (187)
T d1hbnb2 111 ALVQVPSA-RFDVAAEYSAAPLVTATAFVQAII 142 (187)
T ss_dssp EEEECCHH-HHHTCSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HHhhhhhhhHHHHHHHHHHHHHHH
Confidence 78999954 5 56888888999999999987
No 3
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}
Probab=20.04 E-value=19 Score=20.22 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=10.6
Q ss_pred eEEecCCCceeeeeccc
Q 040541 22 LFQVPGRHRCVEFGNFQ 38 (69)
Q Consensus 22 LfQ~PG~~r~veFgn~~ 38 (69)
+.++.++. +||||.+
T Consensus 214 ~i~~~~~~--ie~~~~~ 228 (228)
T d1uf3a_ 214 LLDLRARK--LETGNVR 228 (228)
T ss_dssp EEETTTTE--EEEEECC
T ss_pred EEEccCCE--EEEEeeC
Confidence 56666654 9999864
No 4
>d1e32a3 d.31.1.1 (A:107-200) Membrane fusion atpase p97 domain 2, P97-Nc {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.10 E-value=24 Score=20.81 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=19.9
Q ss_pred hccceeEEecCCCceeeeecccch
Q 040541 17 LSPGLLFQVPGRHRCVEFGNFQTS 40 (69)
Q Consensus 17 LsPGLLfQ~PG~~r~veFgn~~Ts 40 (69)
++.|=.|.+-|..|.|||-=++|.
T Consensus 40 v~~gD~f~v~g~~r~VEFKVv~~d 63 (94)
T d1e32a3 40 IRKGDIFLVRGGMRAVEFKVVETD 63 (94)
T ss_dssp EETTCEEEEEETTEEEEEEEEEES
T ss_pred ccCCCEEEEccCCeeEEEEEEeec
Confidence 467889999999999999766653
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.73 E-value=58 Score=15.70 Aligned_cols=15 Identities=20% Similarity=0.817 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHh
Q 040541 48 SLLYFALVCVFFLAV 62 (69)
Q Consensus 48 a~ifF~l~~if~~ai 62 (69)
.+||-+++.+|..|+
T Consensus 7 v~ifac~i~lfffai 21 (30)
T d2axtt1 7 VFIFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777777777765
No 6
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=12.37 E-value=23 Score=17.51 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=8.2
Q ss_pred HHHHHHhcccee
Q 040541 11 VILFVLLSPGLL 22 (69)
Q Consensus 11 vvLFvlLsPGLL 22 (69)
++|-+.|.||.|
T Consensus 10 valvial~pg~l 21 (31)
T d1jb0m_ 10 VALVIALLPAVL 21 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456677888865
No 7
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.66 E-value=76 Score=18.93 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=18.3
Q ss_pred CCCceeeeecccchHHHHHHHHH
Q 040541 27 GRHRCVEFGNFQTSGAAIMVHSL 49 (69)
Q Consensus 27 G~~r~veFgn~~Tsg~si~vHa~ 49 (69)
||++.+-|=...-||+|-.++.+
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L 23 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNIL 23 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEECCCCCcHHHHHHHH
Confidence 78888888888888888877754
No 8
>d1rqpa1 b.141.1.1 (A:193-298) 5'-fluoro-5'-deoxyadenosine synthase {Streptomyces cattleya [TaxId: 29303]}
Probab=10.29 E-value=18 Score=20.75 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=10.5
Q ss_pred CCceee--eecccchHH
Q 040541 28 RHRCVE--FGNFQTSGA 42 (69)
Q Consensus 28 ~~r~ve--Fgn~~Tsg~ 42 (69)
+=..+| |||..||..
T Consensus 13 ~V~~iDh~FGN~iTNI~ 29 (106)
T d1rqpa1 13 VVSAIDHPFGNVWTNIH 29 (106)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEecCCCcEEEecC
Confidence 334567 999999853
No 9
>d1e6yb2 d.58.31.2 (B:2002-2185) Beta chain {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=9.96 E-value=20 Score=23.82 Aligned_cols=29 Identities=34% Similarity=0.547 Sum_probs=23.5
Q ss_pred eeEEecCCCce---eeeecccchHHHHHHHHHH
Q 040541 21 LLFQVPGRHRC---VEFGNFQTSGAAIMVHSLL 50 (69)
Q Consensus 21 LLfQ~PG~~r~---veFgn~~Tsg~si~vHa~i 50 (69)
+|.|+|-+ |. -||..--|+..+.++|++|
T Consensus 108 llvqvPs~-Ri~~aa~Y~~~~t~~~~A~~~aIi 139 (184)
T d1e6yb2 108 LLIQSPKS-RIIAGADFMSATTVGAAAVTQTIM 139 (184)
T ss_dssp EEEECCHH-HHHTSSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-HHhhhcchhHHHHHHHHHHHHHHH
Confidence 78899954 42 4788888999999999987
No 10
>d1e6vb2 d.58.31.2 (B:7-189) Beta chain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=9.72 E-value=29 Score=23.02 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=23.7
Q ss_pred eeEEecCCCc--eeeeecccchHHHHHHHHHH
Q 040541 21 LLFQVPGRHR--CVEFGNFQTSGAAIMVHSLL 50 (69)
Q Consensus 21 LLfQ~PG~~r--~veFgn~~Tsg~si~vHa~i 50 (69)
+|.|+|-+.- --||----|+..+.++|++|
T Consensus 107 llvqvPs~Ri~~aa~y~v~~~~~~~A~~~aIi 138 (183)
T d1e6vb2 107 LLVQLPSERVKVMADPYSGTLQAGMAVVHAII 138 (183)
T ss_dssp EEEECCHHHHTTCSSSSTHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 7889995421 35788888999999999986
Done!