BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040542
         (250 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A2E|A Chain A, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
 pdb|3A2E|B Chain B, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
 pdb|3A2E|C Chain C, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
 pdb|3A2E|D Chain D, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
          Length = 108

 Score = 38.5 bits (88), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 4/101 (3%)

Query: 145 NLHNVSDATTFNRDV-ATLLNILKNKATSGDNCRKFATGNATTTNSLTIYALVQCTPDLE 203
           N   +   + FNR++ A L ++ +N A SG +   + T  A +  + T Y    C   + 
Sbjct: 11  NTQKIPSGSPFNRNLRAMLADLRQNTAFSGYD---YKTSRAGSGGAPTAYGRATCKQSIS 67

Query: 204 KQQCIDCLNNATALLPKCCDGRQGGRVIAPSCNFRYEIGRF 244
           +  C  CL+N    +   C+   G RV    C  +YE   F
Sbjct: 68  QSDCTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108



 Score = 27.7 bits (60), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 44  SKYKANLDRVLSTISSNTKIS-YGFYTASYGRNNDQVN-AMALCRGDVNPNSCRSCIKTS 101
           S +  NL  +L+ +  NT  S Y + T+  G          A C+  ++ + C +C+   
Sbjct: 19  SPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNL 78

Query: 102 AVELRKHCPNQKEAVIWYDYCMLRYSNRYF 131
              +   C N   A +    C ++Y  R F
Sbjct: 79  VNRIFSICNNAIGARVQLVDCFIQYEQRSF 108


>pdb|3AII|A Chain A, Archaeal Non-Discriminating Glutamyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus
          Length = 553

 Score = 30.4 bits (67), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 86  RGDVNPNSCRSCIKTSAVELRKHCPNQKEAV 116
           RG  NP +    + ++  ELRK  P  KEAV
Sbjct: 20  RGRANPGAVMGAVMSNEPELRKMAPQVKEAV 50


>pdb|1Y7W|A Chain A, Crystal Structure Of A Halotolerant Carbonic Anhydrase
           From Dunaliella Salina
 pdb|1Y7W|B Chain B, Crystal Structure Of A Halotolerant Carbonic Anhydrase
           From Dunaliella Salina
          Length = 291

 Score = 29.3 bits (64), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 10  LCSIVLQLVAHTIAQQDTPLDELCLSEMGNFTKKSKYKANLDRVLSTISSNTKISYGFYT 69
           +  I   L  H + Q+  P D +  +++       KY  N D  L+++ +  +   G  T
Sbjct: 140 INGIHYPLELHIVMQEQDPAD-VATAQLAVIGIMYKYSENGDAFLNSLQTQIEGKIGDGT 198

Query: 70  ASYGRNNDQVNAMALCRGDVNPNSCRSCIKTSAVELRKHCPNQKEAVIWYDYCMLRYSNR 129
           ASYG     ++ +     +V      S +K +  +     P   E V W+ +   R   R
Sbjct: 199 ASYGDTGVSIDNI-----NVKTQLLPSSLKYAGYDGSLTTPGCDERVKWHVFTTPREVTR 253


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.134    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,206,671
Number of Sequences: 62578
Number of extensions: 279434
Number of successful extensions: 564
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 8
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)