Query 040542
Match_columns 250
No_of_seqs 168 out of 1471
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 09:26:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01657 Stress-antifung: Salt 99.9 3.1E-27 6.8E-32 180.0 8.4 102 30-131 1-106 (106)
2 PF01657 Stress-antifung: Salt 99.9 1.4E-25 3.1E-30 170.8 8.9 101 142-244 2-106 (106)
3 PF07172 GRP: Glycine rich pro 88.5 0.39 8.5E-06 35.6 2.5 21 1-21 1-22 (95)
4 PF15284 PAGK: Phage-encoded v 28.2 51 0.0011 22.3 2.0 15 1-15 1-15 (61)
5 PF15240 Pro-rich: Proline-ric 23.3 53 0.0012 27.2 1.7 15 7-21 2-16 (179)
6 PF10731 Anophelin: Thrombin i 18.3 1.4E+02 0.003 20.2 2.5 11 1-11 1-11 (65)
7 PHA00008 J DNA packaging prote 17.0 87 0.0019 17.2 1.1 10 111-120 11-20 (26)
8 PHA02291 hypothetical protein 15.3 1.4E+02 0.0031 22.6 2.3 16 1-16 1-16 (132)
9 PF04726 Microvir_J: Microviru 13.0 79 0.0017 16.9 0.3 10 111-120 10-19 (24)
10 KOG0320 Predicted E3 ubiquitin 10.9 1.5E+02 0.0033 24.6 1.5 44 67-111 119-172 (187)
No 1
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.94 E-value=3.1e-27 Score=180.00 Aligned_cols=102 Identities=37% Similarity=0.788 Sum_probs=78.0
Q ss_pred ccccC-CCCccc-CCCChHHHHHHHHHHHhhhcccCC--CCeeeeeccCCCCeEEEEEeccCCCCccchHHHHHHHHHHH
Q 040542 30 DELCL-SEMGNF-TKKSKYKANLDRVLSTISSNTKIS--YGFYTASYGRNNDQVNAMALCRGDVNPNSCRSCIKTSAVEL 105 (250)
Q Consensus 30 ~~~C~-~~~~~~-~~~s~f~~nl~~ll~~L~~~a~~~--~~f~~~~~g~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~ 105 (250)
|+.|+ +..++| +++++|++||+.||..|+.+++.. .+|++++.|.++++||||+||++|+++++|+.||+.|+.++
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 47898 432577 578889999999999999997643 47999998888999999999999999999999999999999
Q ss_pred hhhCCCCcceEEEeceeEEEEccccc
Q 040542 106 RKHCPNQKEAVIWYDYCMLRYSNRYF 131 (250)
Q Consensus 106 ~~~C~~~~~a~i~~~~C~lrys~~~F 131 (250)
++.|+.++||+||++.|+||||+++|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999998
No 2
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.92 E-value=1.4e-25 Score=170.84 Aligned_cols=101 Identities=39% Similarity=0.696 Sum_probs=77.1
Q ss_pred eecc---cccC-CChhhHHHHHHHHHHHHHHHhhcCCCcccccccccccCCCccEEEEeccCCCCChhhHHHHHHHHHhh
Q 040542 142 WMYN---LHNV-SDATTFNRDVATLLNILKNKATSGDNCRKFATGNATTTNSLTIYALVQCTPDLEKQQCIDCLNNATAL 217 (250)
Q Consensus 142 ~~~~---~~~~-~~~~~f~~~l~~ll~~l~~~a~~~~s~~~fa~~~~~~~~~~~vYglaQC~~Dls~~dC~~CL~~a~~~ 217 (250)
..|+ .+++ +++..|++++..||..|+.+++.. .+.+|++++.+ .++++||||+||++||+++||+.||+.++.+
T Consensus 2 ~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~-~~~~f~~~~~~-~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~ 79 (106)
T PF01657_consen 2 HFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASS-SSKGFATGSAG-SGPDTVYGLAQCRGDLSPSDCRACLADAVAN 79 (106)
T ss_dssp --E---SSB----TT-THHHHHHHHHHHHHHHGGGT-T-TEEEEEE---ST---EEEEEEE-TTS-HHHHHHHHHHHHCC
T ss_pred CcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhc-cccCcEEeecC-CCCCeEEEEEEcCCCCChhhhHHHHHHHHHH
Confidence 4566 3444 456679999999999999998642 24789999875 5788999999999999999999999999999
Q ss_pred ccccCCCCcceEEECCCeeEeeecCCC
Q 040542 218 LPKCCDGRQGGRVIAPSCNFRYEIGRF 244 (250)
Q Consensus 218 ~~~~c~~~~gg~v~~~~C~lRYe~~~F 244 (250)
++++|+.++||+|++++|+||||+|+|
T Consensus 80 ~~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 80 ISSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHHhCCCCceEEEECCCEEEEEECCCC
Confidence 999999999999999999999999998
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=88.47 E-value=0.39 Score=35.64 Aligned_cols=21 Identities=24% Similarity=0.225 Sum_probs=13.4
Q ss_pred CCcchhHHHHHHHHHH-HHhhh
Q 040542 1 MASSRLPLFLCSIVLQ-LVAHT 21 (250)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~ 21 (250)
|+||.+|+|.|++.++ ++++.
T Consensus 1 MaSK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhh
Confidence 9999887777665333 33433
No 4
>PF15284 PAGK: Phage-encoded virulence factor
Probab=28.25 E-value=51 Score=22.30 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=7.1
Q ss_pred CCcchhHHHHHHHHH
Q 040542 1 MASSRLPLFLCSIVL 15 (250)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (250)
|...+.+++.+++.|
T Consensus 1 Mkk~ksifL~l~~~L 15 (61)
T PF15284_consen 1 MKKFKSIFLALVFIL 15 (61)
T ss_pred ChHHHHHHHHHHHHH
Confidence 554555554444433
No 5
>PF15240 Pro-rich: Proline-rich
Probab=23.33 E-value=53 Score=27.22 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhhh
Q 040542 7 PLFLCSIVLQLVAHT 21 (250)
Q Consensus 7 ~~~~~~~~~~~~~~~ 21 (250)
|+|||.+.||.+++|
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 444444444333333
No 6
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=18.29 E-value=1.4e+02 Score=20.22 Aligned_cols=11 Identities=36% Similarity=0.329 Sum_probs=6.4
Q ss_pred CCcchhHHHHH
Q 040542 1 MASSRLPLFLC 11 (250)
Q Consensus 1 ~~~~~~~~~~~ 11 (250)
|++|.+++-||
T Consensus 1 MA~Kl~vialL 11 (65)
T PF10731_consen 1 MASKLIVIALL 11 (65)
T ss_pred CcchhhHHHHH
Confidence 77776544443
No 7
>PHA00008 J DNA packaging protein
Probab=17.05 E-value=87 Score=17.17 Aligned_cols=10 Identities=40% Similarity=0.883 Sum_probs=8.3
Q ss_pred CCcceEEEec
Q 040542 111 NQKEAVIWYD 120 (250)
Q Consensus 111 ~~~~a~i~~~ 120 (250)
..+||+.||.
T Consensus 11 r~KGARLWYV 20 (26)
T PHA00008 11 RRKGARLWYV 20 (26)
T ss_pred ccCceEEEEe
Confidence 4789999985
No 8
>PHA02291 hypothetical protein
Probab=15.30 E-value=1.4e+02 Score=22.59 Aligned_cols=16 Identities=6% Similarity=0.289 Sum_probs=10.2
Q ss_pred CCcchhHHHHHHHHHH
Q 040542 1 MASSRLPLFLCSIVLQ 16 (250)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (250)
|+++..|+-+|++.+|
T Consensus 1 MS~K~~iFYiL~~~VL 16 (132)
T PHA02291 1 MSRKASIFYILVVIVL 16 (132)
T ss_pred CCcchhhHHHHHHHHH
Confidence 8888777665554333
No 9
>PF04726 Microvir_J: Microvirus J protein; InterPro: IPR006815 This small protein is involved in DNA packaging, interacting with DNA via its hydrophobic C terminus. In bacteriophage phi-X174, J is present in 60 copies, and forms an S-shaped polypeptide chain without any secondary structure. It is thought to interact with DNA through simple charge interactions [].; GO: 0003677 DNA binding, 0019073 viral DNA genome packaging, 0019028 viral capsid; PDB: 1M06_J 1GFF_3 1RB8_J 2BPA_3.
Probab=13.04 E-value=79 Score=16.94 Aligned_cols=10 Identities=40% Similarity=0.900 Sum_probs=4.4
Q ss_pred CCcceEEEec
Q 040542 111 NQKEAVIWYD 120 (250)
Q Consensus 111 ~~~~a~i~~~ 120 (250)
..+||+.||.
T Consensus 10 ~~kgarlwyv 19 (24)
T PF04726_consen 10 KRKGARLWYV 19 (24)
T ss_dssp SSSSS----S
T ss_pred ccCceEEEEe
Confidence 4689999985
No 10
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=10.90 E-value=1.5e+02 Score=24.59 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=29.1
Q ss_pred eeeeeccCCCCeEEEEEeccCCCCcc----------chHHHHHHHHHHHhhhCCC
Q 040542 67 FYTASYGRNNDQVNAMALCRGDVNPN----------SCRSCIKTSAVELRKHCPN 111 (250)
Q Consensus 67 f~~~~~g~~~~~vygl~qC~~Dls~~----------~C~~Cl~~a~~~~~~~C~~ 111 (250)
+-.+..+..+..+|+=--|.-+.+.. -|+.|+..|++...+ ||.
T Consensus 119 ~~k~v~~~~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~-CP~ 172 (187)
T KOG0320|consen 119 RDKDVDPLRKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNK-CPT 172 (187)
T ss_pred ccccccccccccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCC-CCC
Confidence 33333333344567777777666433 499999999998876 885
Done!