Query 040542
Match_columns 250
No_of_seqs 168 out of 1471
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 15:07:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 100.0 4.7E-29 1.6E-33 189.6 10.3 102 28-131 5-108 (108)
2 2e79_A Ginkbilobin-2; DUF26 fo 100.0 9.3E-29 3.2E-33 188.0 10.0 102 28-131 5-108 (108)
3 3a2e_A Ginkbilobin-2; domain 2 99.9 6.4E-28 2.2E-32 183.3 10.8 106 137-244 3-108 (108)
4 2e79_A Ginkbilobin-2; DUF26 fo 99.9 3.8E-27 1.3E-31 179.1 10.9 107 136-244 2-108 (108)
5 1gff_3 Bacteriophage G4 capsid 16.5 58 0.002 16.9 1.1 10 111-120 11-20 (26)
6 1m06_J J protein, small core p 7.0 82 0.0028 16.4 -0.3 10 111-120 10-19 (26)
7 2xk0_A Polycomb protein PCL; t 6.8 2E+02 0.0068 19.0 1.4 12 119-130 41-52 (69)
8 3nt8_A Ancylostoma secreted pr 6.5 2.8E+02 0.0096 24.3 2.8 18 154-171 236-253 (424)
9 2a3m_A COG3005: nitrate/TMAO r 6.2 1.2E+02 0.0041 22.3 0.1 7 1-7 1-7 (130)
10 2kqs_B Death domain-associated 5.1 1.9E+02 0.0066 15.2 0.5 11 191-201 3-13 (26)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.96 E-value=4.7e-29 Score=189.59 Aligned_cols=102 Identities=22% Similarity=0.454 Sum_probs=92.4
Q ss_pred CcccccCCCCcccCCCChHHHHHHHHHHHhhhcccCC-CCeeeeeccC-CCCeEEEEEeccCCCCccchHHHHHHHHHHH
Q 040542 28 PLDELCLSEMGNFTKKSKYKANLDRVLSTISSNTKIS-YGFYTASYGR-NNDQVNAMALCRGDVNPNSCRSCIKTSAVEL 105 (250)
Q Consensus 28 ~~~~~C~~~~~~~~~~s~f~~nl~~ll~~L~~~a~~~-~~f~~~~~g~-~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~ 105 (250)
.+++.|++ ++|+++++|++||+.||+.|+++++.+ .+|++...+. ++++||||+||++|+++++|+.||+.|+.++
T Consensus 5 ~v~~~Cn~--~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~ 82 (108)
T 3a2e_A 5 FVSSACNT--QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRI 82 (108)
T ss_dssp EEEEEECS--SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTH
T ss_pred eeeeecCC--CccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 56788976 499999999999999999999998654 3477777664 5699999999999999999999999999999
Q ss_pred hhhCCCCcceEEEeceeEEEEccccc
Q 040542 106 RKHCPNQKEAVIWYDYCMLRYSNRYF 131 (250)
Q Consensus 106 ~~~C~~~~~a~i~~~~C~lrys~~~F 131 (250)
++.||+++||+||+++|+||||+++|
T Consensus 83 ~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 83 FSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHCCCCceEEEECCCEEEEEeCCcC
Confidence 99999999999999999999999998
No 2
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.95 E-value=9.3e-29 Score=188.00 Aligned_cols=102 Identities=22% Similarity=0.456 Sum_probs=94.5
Q ss_pred CcccccCCCCcccCCCChHHHHHHHHHHHhhhcccCC-CCeeeeeccCCC-CeEEEEEeccCCCCccchHHHHHHHHHHH
Q 040542 28 PLDELCLSEMGNFTKKSKYKANLDRVLSTISSNTKIS-YGFYTASYGRNN-DQVNAMALCRGDVNPNSCRSCIKTSAVEL 105 (250)
Q Consensus 28 ~~~~~C~~~~~~~~~~s~f~~nl~~ll~~L~~~a~~~-~~f~~~~~g~~~-~~vygl~qC~~Dls~~~C~~Cl~~a~~~~ 105 (250)
++++.|++ ++|++++.|++||+.||+.|+.+++.+ .+|+++++|.+| ++||||+||+||+++++|+.||+.|+.++
T Consensus 5 ~~~~~C~~--~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~~~ 82 (108)
T 2e79_A 5 FVSSACNT--QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRI 82 (108)
T ss_dssp EEEEEECS--SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTH
T ss_pred eeeeeCCC--CeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Confidence 77899987 499999999999999999999998644 358988888776 89999999999999999999999999999
Q ss_pred hhhCCCCcceEEEeceeEEEEccccc
Q 040542 106 RKHCPNQKEAVIWYDYCMLRYSNRYF 131 (250)
Q Consensus 106 ~~~C~~~~~a~i~~~~C~lrys~~~F 131 (250)
++.||+++||+||+++|+||||+++|
T Consensus 83 ~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 83 FSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHhCCCCceEEEECCCeEEEEeCCCC
Confidence 99999999999999999999999987
No 3
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.95 E-value=6.4e-28 Score=183.34 Aligned_cols=106 Identities=22% Similarity=0.408 Sum_probs=95.3
Q ss_pred CCCceeecccccCCChhhHHHHHHHHHHHHHHHhhcCCCcccccccccccCCCccEEEEeccCCCCChhhHHHHHHHHHh
Q 040542 137 FGPWFWMYNLHNVSDATTFNRDVATLLNILKNKATSGDNCRKFATGNATTTNSLTIYALVQCTPDLEKQQCIDCLNNATA 216 (250)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~s~~~fa~~~~~~~~~~~vYglaQC~~Dls~~dC~~CL~~a~~ 216 (250)
.......||.+++++++.|+++|+.||..|+.+++. +..+|+++..+..+.++||||+||++|+++++|+.||+.++.
T Consensus 3 t~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~--s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~ 80 (108)
T 3a2e_A 3 TAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAF--SGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVN 80 (108)
T ss_dssp CCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGG--TTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cceeeeecCCCccCCCChHHHHHHHHHHHHHhhCcc--ccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 345567899999999999999999999999999864 456777776654567899999999999999999999999999
Q ss_pred hccccCCCCcceEEECCCeeEeeecCCC
Q 040542 217 LLPKCCDGRQGGRVIAPSCNFRYEIGRF 244 (250)
Q Consensus 217 ~~~~~c~~~~gg~v~~~~C~lRYe~~~F 244 (250)
+++++|++++||+||+++|+||||+++|
T Consensus 81 ~~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 81 RIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp THHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 9999999999999999999999999998
No 4
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.94 E-value=3.8e-27 Score=179.08 Aligned_cols=107 Identities=21% Similarity=0.407 Sum_probs=95.0
Q ss_pred cCCCceeecccccCCChhhHHHHHHHHHHHHHHHhhcCCCcccccccccccCCCccEEEEeccCCCCChhhHHHHHHHHH
Q 040542 136 EFGPWFWMYNLHNVSDATTFNRDVATLLNILKNKATSGDNCRKFATGNATTTNSLTIYALVQCTPDLEKQQCIDCLNNAT 215 (250)
Q Consensus 136 d~~~~~~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~s~~~fa~~~~~~~~~~~vYglaQC~~Dls~~dC~~CL~~a~ 215 (250)
+..+.+..|+.+++++++.|++++..||..|+.+|+. +..+|++++.+..+.++||||+||+|||++++|+.||+.++
T Consensus 2 ~t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~--~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~ 79 (108)
T 2e79_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAF--SGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLV 79 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGG--TTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhc--CCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHH
Confidence 3456788899888898999999999999999999864 33568888765333479999999999999999999999999
Q ss_pred hhccccCCCCcceEEECCCeeEeeecCCC
Q 040542 216 ALLPKCCDGRQGGRVIAPSCNFRYEIGRF 244 (250)
Q Consensus 216 ~~~~~~c~~~~gg~v~~~~C~lRYe~~~F 244 (250)
.+++++|++++||+||+++|+||||+++|
T Consensus 80 ~~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 80 NRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp TTHHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 99999999999999999999999999998
No 5
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=16.54 E-value=58 Score=16.90 Aligned_cols=10 Identities=40% Similarity=0.856 Sum_probs=8.4
Q ss_pred CCcceEEEec
Q 040542 111 NQKEAVIWYD 120 (250)
Q Consensus 111 ~~~~a~i~~~ 120 (250)
.++||+.||.
T Consensus 11 r~kgarlwyv 20 (26)
T 1gff_3 11 KSKGARLWYV 20 (26)
T ss_pred CCCceEEEEe
Confidence 4789999985
No 6
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=7.02 E-value=82 Score=16.40 Aligned_cols=10 Identities=40% Similarity=0.883 Sum_probs=7.9
Q ss_pred CCcceEEEec
Q 040542 111 NQKEAVIWYD 120 (250)
Q Consensus 111 ~~~~a~i~~~ 120 (250)
..+||+.||.
T Consensus 10 r~kgarlwyv 19 (26)
T 1m06_J 10 RRKGARLWYV 19 (26)
T ss_dssp CCSSSCCCCS
T ss_pred cCCceEEEEE
Confidence 4689999985
No 7
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=6.83 E-value=2e+02 Score=19.02 Aligned_cols=12 Identities=17% Similarity=0.509 Sum_probs=9.7
Q ss_pred eceeEEEEcccc
Q 040542 119 YDYCMLRYSNRY 130 (250)
Q Consensus 119 ~~~C~lrys~~~ 130 (250)
-.+|++||++.+
T Consensus 41 ~~~ClV~FeD~S 52 (69)
T 2xk0_A 41 SDQYLIRFDDQS 52 (69)
T ss_dssp SSCEEEEETTCC
T ss_pred CceEEEEecCCc
Confidence 457999999974
No 8
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}
Probab=6.51 E-value=2.8e+02 Score=24.26 Aligned_cols=18 Identities=6% Similarity=0.176 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 040542 154 TFNRDVATLLNILKNKAT 171 (250)
Q Consensus 154 ~f~~~l~~ll~~l~~~a~ 171 (250)
.+.+.+-...+.++...+
T Consensus 236 ~~~~~iL~~HN~~R~~~a 253 (424)
T 3nt8_A 236 SVRDTFLSVHNEFRSSVA 253 (424)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 466666666677766654
No 9
>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound cytochrome C subunit; tetraheme cytochrome, electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A*
Probab=6.20 E-value=1.2e+02 Score=22.31 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=0.0
Q ss_pred CCcchhH
Q 040542 1 MASSRLP 7 (250)
Q Consensus 1 ~~~~~~~ 7 (250)
|..+.++
T Consensus 1 Mkk~~~~ 7 (130)
T 2a3m_A 1 MRKSLFA 7 (130)
T ss_dssp -------
T ss_pred CchhHHH
Confidence 4443333
No 10
>2kqs_B Death domain-associated protein 6; SUMO, SIM, DAXX, nucleus, phosphoprotein, UBL conjugation PA apoptosis, transcription, transcription regulation; NMR {Homo sapiens}
Probab=5.10 E-value=1.9e+02 Score=15.24 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=7.5
Q ss_pred cEEEEeccCCC
Q 040542 191 TIYALVQCTPD 201 (250)
Q Consensus 191 ~vYglaQC~~D 201 (250)
++..+.||.|+
T Consensus 3 kv~~~tqcdP~ 13 (26)
T 2kqs_B 3 KTSVATQCDPE 13 (26)
T ss_pred cccccccCCcc
Confidence 35667788775
Done!