Query 040542
Match_columns 250
No_of_seqs 168 out of 1471
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 15:07:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040542.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040542hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g25a_ g.44.1.1 (A:) TFIIH Ma 5.6 97 0.0071 18.0 1.0 21 91-111 28-48 (65)
2 d1rmda2 g.44.1.1 (A:1-86) V(D) 4.6 1.5E+02 0.011 18.5 1.5 21 91-111 43-63 (86)
3 d2baia1 g.87.1.1 (A:1-32) Poly 4.2 2.4E+02 0.018 13.8 1.8 15 197-211 9-23 (32)
4 d1l8na2 d.92.2.2 (A:4-142) alp 4.1 51 0.0037 22.7 -1.4 11 119-129 2-12 (139)
5 d1cl4a_ g.40.1.1 (A:) Nucleoca 3.7 60 0.0044 16.8 -1.0 24 218-241 1-24 (32)
6 d1ansa_ g.11.1.1 (A:) Neurotox 3.7 74 0.0054 15.2 -0.5 17 220-236 2-18 (27)
7 d1wiga2 g.39.1.3 (A:33-73) Act 3.5 1.1E+02 0.0082 16.5 0.0 10 113-122 18-27 (41)
8 d1w7ja1 b.34.3.1 (A:5-62) Myos 3.4 2.1E+02 0.015 16.5 1.3 10 112-121 4-13 (58)
9 d2cupa3 g.39.1.3 (A:8-34) Four 3.3 1.3E+02 0.0095 14.6 0.2 8 116-123 20-27 (27)
10 d1rhya1 d.14.1.9 (A:2-93) Imid 3.0 4.1E+02 0.03 16.8 2.6 24 83-106 59-88 (92)
No 1
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.57 E-value=97 Score=18.03 Aligned_cols=21 Identities=29% Similarity=0.630 Sum_probs=17.0
Q ss_pred ccchHHHHHHHHHHHhhhCCC
Q 040542 91 PNSCRSCIKTSAVELRKHCPN 111 (250)
Q Consensus 91 ~~~C~~Cl~~a~~~~~~~C~~ 111 (250)
..-|..||...+......||.
T Consensus 28 H~fc~~Ci~~~~~~~~~~CP~ 48 (65)
T d1g25a_ 28 HTLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CCEEHHHHHHHHHTTSSSCTT
T ss_pred hHhhHHHHHHHhCcCcCCCCC
Confidence 468999999988766667986
No 2
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.58 E-value=1.5e+02 Score=18.48 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=16.5
Q ss_pred ccchHHHHHHHHHHHhhhCCC
Q 040542 91 PNSCRSCIKTSAVELRKHCPN 111 (250)
Q Consensus 91 ~~~C~~Cl~~a~~~~~~~C~~ 111 (250)
..-|+.|+...+..-...||.
T Consensus 43 H~FC~~Ci~~~~~~~~~~CP~ 63 (86)
T d1rmda2 43 HLFCRICILRCLKVMGSYCPS 63 (86)
T ss_dssp CEEEHHHHHHHHHHTCSBCTT
T ss_pred ChhhHHHHHHHHhhCCCcCcc
Confidence 568999999988655556885
No 3
>d2baia1 g.87.1.1 (A:1-32) Polyprotein leader polypeptide {Mengo encephalomyocarditis virus [TaxId: 12107]}
Probab=4.19 E-value=2.4e+02 Score=13.78 Aligned_cols=15 Identities=20% Similarity=0.694 Sum_probs=12.5
Q ss_pred ccCCCCChhhHHHHH
Q 040542 197 QCTPDLEKQQCIDCL 211 (250)
Q Consensus 197 QC~~Dls~~dC~~CL 211 (250)
.|...++-++|..|-
T Consensus 9 icahsmtfeecpkcs 23 (32)
T d2baia1 9 ICAHSMTFEECPKCS 23 (32)
T ss_dssp CCSSSSCGGGHHHHH
T ss_pred HHHhhccHhhCcchh
Confidence 488888999998885
No 4
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.06 E-value=51 Score=22.71 Aligned_cols=11 Identities=45% Similarity=1.138 Sum_probs=8.9
Q ss_pred eceeEEEEccc
Q 040542 119 YDYCMLRYSNR 129 (250)
Q Consensus 119 ~~~C~lrys~~ 129 (250)
||.|+|||.--
T Consensus 2 y~~~WLrY~~~ 12 (139)
T d1l8na2 2 YEPCWLRYERK 12 (139)
T ss_dssp CCCTTCCCCCC
T ss_pred CcchhcCCCcc
Confidence 67799999764
No 5
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=3.70 E-value=60 Score=16.80 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=18.0
Q ss_pred ccccCCCCcceEEECCCeeEeeec
Q 040542 218 LPKCCDGRQGGRVIAPSCNFRYEI 241 (250)
Q Consensus 218 ~~~~c~~~~gg~v~~~~C~lRYe~ 241 (250)
+++.|+.=+-|+.|...|.-+.+.
T Consensus 1 ~P~lCPrC~kG~HWa~~Crsk~~~ 24 (32)
T d1cl4a_ 1 VPGLCPRCKRGKHWANECKSKTDN 24 (32)
T ss_dssp CCCSCSSCSSCSSCSTTCCCTTSS
T ss_pred CCccCccccCcchHHHHhhhhhcc
Confidence 467788777788898888776653
No 6
>d1ansa_ g.11.1.1 (A:) Neurotoxin III (ATX III) {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=3.69 E-value=74 Score=15.24 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=9.9
Q ss_pred ccCCCCcceEEECCCee
Q 040542 220 KCCDGRQGGRVIAPSCN 236 (250)
Q Consensus 220 ~~c~~~~gg~v~~~~C~ 236 (250)
+||+--.||--|+..|+
T Consensus 2 sccpcywggcpwgqncy 18 (27)
T d1ansa_ 2 SCCPCYWGGCPWGQNCY 18 (27)
T ss_dssp CSCCSTTTTCSSSCSSC
T ss_pred ccccccccCCccccccc
Confidence 45665556655666664
No 7
>d1wiga2 g.39.1.3 (A:33-73) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.50 E-value=1.1e+02 Score=16.53 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=6.5
Q ss_pred cceEEEecee
Q 040542 113 KEAVIWYDYC 122 (250)
Q Consensus 113 ~~a~i~~~~C 122 (250)
+|..||.+.|
T Consensus 18 QGs~IWHP~C 27 (41)
T d1wiga2 18 QGSSIWHPAC 27 (41)
T ss_dssp ETTEEECTTH
T ss_pred cCCceeCCcc
Confidence 4666777666
No 8
>d1w7ja1 b.34.3.1 (A:5-62) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=3.39 E-value=2.1e+02 Score=16.51 Aligned_cols=10 Identities=30% Similarity=0.468 Sum_probs=7.6
Q ss_pred CcceEEEece
Q 040542 112 QKEAVIWYDY 121 (250)
Q Consensus 112 ~~~a~i~~~~ 121 (250)
.+|+|+|++.
T Consensus 4 ~kgtRvWiPd 13 (58)
T d1w7ja1 4 TKYARVWIPD 13 (58)
T ss_dssp CTTCEEEEEE
T ss_pred ccCcEEEEEC
Confidence 5788888873
No 9
>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.32 E-value=1.3e+02 Score=14.58 Aligned_cols=8 Identities=38% Similarity=1.120 Sum_probs=3.6
Q ss_pred EEEeceeE
Q 040542 116 VIWYDYCM 123 (250)
Q Consensus 116 ~i~~~~C~ 123 (250)
+.|.+.||
T Consensus 20 r~wh~~cf 27 (27)
T d2cupa3 20 RFWHDTCF 27 (27)
T ss_dssp EEEETTTC
T ss_pred cccccccC
Confidence 34445443
No 10
>d1rhya1 d.14.1.9 (A:2-93) Imidazole glycerol phosphate dehydratase {Fungus (Filobasidiella neoformans) [TaxId: 5207]}
Probab=2.96 E-value=4.1e+02 Score=16.77 Aligned_cols=24 Identities=17% Similarity=0.452 Sum_probs=18.7
Q ss_pred EeccCCC------CccchHHHHHHHHHHHh
Q 040542 83 ALCRGDV------NPNSCRSCIKTSAVELR 106 (250)
Q Consensus 83 ~qC~~Dl------s~~~C~~Cl~~a~~~~~ 106 (250)
..|.||+ +-+|+.-||..|+.+..
T Consensus 59 i~a~GDl~vD~HHtvEDvgI~LG~al~~AL 88 (92)
T d1rhya1 59 LQCKGDLHIDDHHTAEDCALALGEAFKKAL 88 (92)
T ss_dssp EEEESCC------CCHHHHHHHHHHHHHHH
T ss_pred EEEEeccccccchhhHHHHHHHHHHHHHHh
Confidence 4788887 46779999999987754
Done!