Query 040546
Match_columns 225
No_of_seqs 205 out of 1361
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 09:29:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.5 8.4E-14 1.8E-18 95.3 6.3 53 58-110 4-59 (60)
2 PF00010 HLH: Helix-loop-helix 99.5 8.1E-14 1.8E-18 94.5 5.4 49 59-107 2-55 (55)
3 smart00353 HLH helix loop heli 99.4 2.8E-13 6E-18 90.9 6.2 49 63-111 1-52 (53)
4 KOG1318 Helix loop helix trans 99.2 1E-10 2.2E-15 108.0 8.5 59 54-112 229-291 (411)
5 cd04897 ACT_ACR_3 ACT domain-c 99.1 3.9E-10 8.5E-15 81.6 9.6 67 145-211 3-74 (75)
6 cd04896 ACT_ACR-like_3 ACT dom 99.1 1.3E-09 2.9E-14 78.8 9.4 67 145-212 2-75 (75)
7 cd04895 ACT_ACR_1 ACT domain-c 99.0 5.2E-09 1.1E-13 75.1 9.6 52 144-195 2-53 (72)
8 cd04927 ACT_ACR-like_2 Second 98.9 1.5E-08 3.4E-13 73.1 9.6 67 144-210 1-72 (76)
9 KOG1319 bHLHZip transcription 98.8 6.5E-09 1.4E-13 86.5 5.6 63 55-117 59-128 (229)
10 cd04900 ACT_UUR-like_1 ACT dom 98.8 8.8E-08 1.9E-12 68.2 9.6 65 144-208 2-72 (73)
11 KOG4304 Transcriptional repres 98.7 2.1E-08 4.5E-13 87.9 5.3 58 55-112 29-94 (250)
12 cd04925 ACT_ACR_2 ACT domain-c 98.7 3.4E-07 7.3E-12 65.6 10.0 66 145-210 2-73 (74)
13 KOG3561 Aryl-hydrocarbon recep 98.4 2.3E-07 4.9E-12 92.3 5.5 53 57-109 19-75 (803)
14 cd04899 ACT_ACR-UUR-like_2 C-t 98.4 3.6E-06 7.8E-11 58.5 9.4 64 145-208 2-69 (70)
15 cd04928 ACT_TyrKc Uncharacteri 98.4 5.7E-06 1.2E-10 58.8 9.7 64 145-209 3-67 (68)
16 KOG0561 bHLH transcription fac 98.3 9.7E-07 2.1E-11 78.4 5.5 61 53-113 55-117 (373)
17 PRK05007 PII uridylyl-transfer 98.3 4.1E-06 8.8E-11 85.2 10.1 73 139-211 804-880 (884)
18 cd04926 ACT_ACR_4 C-terminal 98.2 2.2E-05 4.8E-10 55.7 10.0 67 144-210 2-68 (72)
19 KOG2483 Upstream transcription 98.2 4.3E-06 9.4E-11 72.5 6.4 59 56-114 57-118 (232)
20 PRK01759 glnD PII uridylyl-tra 98.1 1.2E-05 2.6E-10 81.6 9.8 70 140-209 780-853 (854)
21 PRK00275 glnD PII uridylyl-tra 98.1 2.7E-05 5.8E-10 79.4 11.2 73 141-213 812-889 (895)
22 cd04873 ACT_UUR-ACR-like ACT d 98.0 6.8E-05 1.5E-09 51.6 9.5 64 145-208 2-69 (70)
23 PRK04374 PII uridylyl-transfer 98.0 5.8E-05 1.3E-09 76.8 12.0 72 139-210 792-867 (869)
24 PRK03059 PII uridylyl-transfer 97.9 7.9E-05 1.7E-09 75.7 10.1 70 141-210 784-855 (856)
25 PF13740 ACT_6: ACT domain; PD 97.9 0.00017 3.7E-09 51.7 9.1 66 143-210 2-67 (76)
26 PRK05092 PII uridylyl-transfer 97.8 0.0002 4.3E-09 73.4 12.1 71 141-211 841-916 (931)
27 PF01842 ACT: ACT domain; Int 97.8 0.00014 3.1E-09 49.3 7.5 62 145-209 2-65 (66)
28 TIGR01693 UTase_glnD [Protein- 97.8 0.00024 5.2E-09 72.1 12.2 73 141-213 666-744 (850)
29 PRK03381 PII uridylyl-transfer 97.8 0.00014 2.9E-09 73.3 10.0 54 142-195 706-759 (774)
30 PRK01759 glnD PII uridylyl-tra 97.7 0.00028 6E-09 71.8 11.3 74 140-213 674-752 (854)
31 COG2844 GlnD UTP:GlnB (protein 97.7 9.8E-05 2.1E-09 73.6 7.4 74 142-215 790-863 (867)
32 TIGR01693 UTase_glnD [Protein- 97.7 0.00025 5.5E-09 72.0 10.2 69 141-209 777-849 (850)
33 KOG2588 Predicted DNA-binding 97.7 1.8E-05 3.9E-10 79.4 1.6 58 57-114 275-333 (953)
34 PRK05007 PII uridylyl-transfer 97.6 0.00048 1E-08 70.3 11.5 72 141-212 699-775 (884)
35 PRK03381 PII uridylyl-transfer 97.6 0.00039 8.4E-09 70.0 10.5 72 141-212 597-669 (774)
36 PLN03217 transcription factor 97.6 0.0002 4.3E-09 52.6 5.7 47 71-117 20-72 (93)
37 cd04893 ACT_GcvR_1 ACT domains 97.6 0.001 2.2E-08 47.8 9.4 65 144-210 2-66 (77)
38 KOG4029 Transcription factor H 97.5 0.00014 3.1E-09 62.8 4.9 57 58-114 109-169 (228)
39 PRK03059 PII uridylyl-transfer 97.5 0.0011 2.5E-08 67.4 12.1 73 141-213 676-753 (856)
40 PRK00194 hypothetical protein; 97.4 0.00082 1.8E-08 49.3 7.8 68 143-210 3-70 (90)
41 KOG3960 Myogenic helix-loop-he 97.4 0.00047 1E-08 60.2 6.8 60 58-117 118-179 (284)
42 cd04872 ACT_1ZPV ACT domain pr 97.4 0.00097 2.1E-08 48.8 7.6 68 144-211 2-69 (88)
43 PRK04374 PII uridylyl-transfer 97.3 0.0028 6E-08 64.8 12.5 73 140-212 687-762 (869)
44 PRK00275 glnD PII uridylyl-tra 97.3 0.0015 3.3E-08 66.8 10.2 72 142-213 703-781 (895)
45 cd04894 ACT_ACR-like_1 ACT dom 97.3 0.0017 3.7E-08 45.3 7.1 64 145-208 2-67 (69)
46 cd04869 ACT_GcvR_2 ACT domains 97.3 0.0037 8E-08 44.5 9.4 65 146-211 2-72 (81)
47 cd04870 ACT_PSP_1 CT domains f 97.3 0.0027 5.8E-08 45.1 8.5 64 146-210 2-65 (75)
48 cd04875 ACT_F4HF-DF N-terminal 97.2 0.0041 8.8E-08 43.9 9.2 65 146-210 2-68 (74)
49 PF13291 ACT_4: ACT domain; PD 97.2 0.0015 3.3E-08 46.7 6.9 65 142-207 5-71 (80)
50 PRK05092 PII uridylyl-transfer 97.1 0.0049 1.1E-07 63.3 11.3 71 141-211 730-806 (931)
51 cd04887 ACT_MalLac-Enz ACT_Mal 96.8 0.012 2.5E-07 41.1 8.3 62 146-208 2-64 (74)
52 cd04886 ACT_ThrD-II-like C-ter 96.8 0.013 2.7E-07 39.8 8.0 61 146-207 1-66 (73)
53 cd04888 ACT_PheB-BS C-terminal 96.7 0.011 2.4E-07 41.3 7.3 64 145-208 2-66 (76)
54 PRK06027 purU formyltetrahydro 96.3 0.042 9.2E-07 49.2 10.1 69 143-211 6-76 (286)
55 cd04877 ACT_TyrR N-terminal AC 96.1 0.029 6.3E-07 39.6 6.6 59 145-207 2-60 (74)
56 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.0 0.035 7.5E-07 38.2 6.9 62 145-207 2-65 (79)
57 PRK04435 hypothetical protein; 96.0 0.056 1.2E-06 43.7 8.7 70 139-208 65-135 (147)
58 PRK08577 hypothetical protein; 95.8 0.19 4.1E-06 39.8 10.8 68 141-208 54-123 (136)
59 COG2844 GlnD UTP:GlnB (protein 95.7 0.062 1.3E-06 54.2 9.5 74 142-215 683-761 (867)
60 cd04874 ACT_Af1403 N-terminal 95.7 0.11 2.5E-06 35.0 8.2 60 145-207 2-62 (72)
61 cd04876 ACT_RelA-SpoT ACT dom 95.7 0.073 1.6E-06 34.6 7.0 60 146-206 1-61 (71)
62 TIGR00655 PurU formyltetrahydr 95.5 0.12 2.7E-06 46.1 9.8 66 145-210 2-70 (280)
63 cd04878 ACT_AHAS N-terminal AC 95.4 0.15 3.3E-06 34.2 7.9 61 145-207 2-64 (72)
64 PRK13010 purU formyltetrahydro 95.3 0.093 2E-06 47.1 8.4 69 143-211 9-80 (289)
65 KOG3910 Helix loop helix trans 95.2 0.023 4.9E-07 54.2 4.1 58 56-113 524-585 (632)
66 PRK11589 gcvR glycine cleavage 95.1 0.062 1.3E-06 45.4 6.3 66 142-209 7-72 (190)
67 cd04879 ACT_3PGDH-like ACT_3PG 95.1 0.16 3.5E-06 33.9 7.4 59 146-208 2-62 (71)
68 cd04903 ACT_LSD C-terminal ACT 95.1 0.18 3.9E-06 33.9 7.5 58 146-207 2-61 (71)
69 cd02116 ACT ACT domains are co 95.1 0.2 4.4E-06 30.7 7.3 35 146-180 1-35 (60)
70 cd04880 ACT_AAAH-PDT-like ACT 95.0 0.28 6.1E-06 34.4 8.5 61 148-208 4-67 (75)
71 PRK13011 formyltetrahydrofolat 94.8 0.23 5.1E-06 44.5 9.4 69 143-211 7-76 (286)
72 cd04905 ACT_CM-PDT C-terminal 94.6 0.41 8.8E-06 34.1 8.5 47 146-192 4-51 (80)
73 cd04909 ACT_PDH-BS C-terminal 93.9 0.67 1.4E-05 31.6 8.3 60 145-207 3-64 (69)
74 cd04884 ACT_CBS C-terminal ACT 93.9 0.46 9.9E-06 33.0 7.4 62 146-208 2-66 (72)
75 PRK07334 threonine dehydratase 93.7 0.39 8.5E-06 44.8 8.9 66 142-208 325-395 (403)
76 KOG3560 Aryl-hydrocarbon recep 93.7 0.049 1.1E-06 52.6 2.8 38 67-104 34-75 (712)
77 COG3830 ACT domain-containing 93.6 0.13 2.9E-06 38.4 4.4 70 143-212 3-72 (90)
78 cd04882 ACT_Bt0572_2 C-termina 93.6 0.47 1E-05 31.6 6.9 56 146-207 2-59 (65)
79 cd04889 ACT_PDH-BS-like C-term 93.5 0.37 8.1E-06 31.6 6.2 46 146-191 1-47 (56)
80 cd04908 ACT_Bt0572_1 N-termina 93.2 0.44 9.6E-06 32.6 6.3 45 145-191 3-47 (66)
81 KOG4447 Transcription factor T 93.1 0.064 1.4E-06 43.8 2.2 53 58-110 78-132 (173)
82 cd04883 ACT_AcuB C-terminal AC 92.4 1.6 3.5E-05 29.7 8.4 61 144-208 2-64 (72)
83 KOG3558 Hypoxia-inducible fact 92.3 0.12 2.7E-06 51.1 3.4 47 59-105 47-97 (768)
84 cd04931 ACT_PAH ACT domain of 92.3 1.3 2.8E-05 32.9 8.1 62 144-207 15-77 (90)
85 cd04904 ACT_AAAH ACT domain of 92.0 0.95 2.1E-05 31.9 7.0 58 148-208 5-63 (74)
86 cd04901 ACT_3PGDH C-terminal A 92.0 0.2 4.3E-06 34.1 3.3 58 146-207 2-59 (69)
87 COG4492 PheB ACT domain-contai 91.8 1.1 2.3E-05 36.0 7.5 69 140-208 69-138 (150)
88 TIGR00119 acolac_sm acetolacta 91.8 1 2.2E-05 37.0 7.7 65 145-211 3-69 (157)
89 COG0788 PurU Formyltetrahydrof 91.6 1.1 2.4E-05 39.9 8.2 68 143-210 7-76 (287)
90 cd04885 ACT_ThrD-I Tandem C-te 91.3 1.4 2.9E-05 30.4 7.0 59 147-207 2-61 (68)
91 PRK11895 ilvH acetolactate syn 91.0 1.4 3E-05 36.4 7.8 65 145-211 4-70 (161)
92 KOG4395 Transcription factor A 90.7 0.48 1E-05 41.7 5.0 55 57-111 173-230 (285)
93 PRK11092 bifunctional (p)ppGpp 90.6 1.1 2.3E-05 45.2 8.1 64 143-207 626-690 (702)
94 KOG3559 Transcriptional regula 90.6 0.26 5.5E-06 46.3 3.4 42 65-106 8-53 (598)
95 PRK06737 acetolactate synthase 90.5 1.6 3.4E-05 31.6 6.8 64 145-210 4-69 (76)
96 PRK10872 relA (p)ppGpp synthet 89.8 1.4 3.1E-05 44.6 8.2 65 143-208 666-732 (743)
97 PRK00227 glnD PII uridylyl-tra 89.8 2.6 5.7E-05 42.4 10.0 67 145-212 548-616 (693)
98 PF13710 ACT_5: ACT domain; PD 89.7 1.5 3.2E-05 30.2 5.9 57 152-210 1-59 (63)
99 TIGR00691 spoT_relA (p)ppGpp s 89.4 1.5 3.3E-05 43.9 8.1 65 142-207 609-674 (683)
100 PRK11152 ilvM acetolactate syn 89.1 3.2 7E-05 29.9 7.5 63 145-210 5-69 (76)
101 cd04902 ACT_3PGDH-xct C-termin 89.1 1.5 3.2E-05 29.8 5.7 57 147-207 3-61 (73)
102 cd04929 ACT_TPH ACT domain of 88.8 2.9 6.2E-05 29.8 7.1 57 149-208 6-63 (74)
103 PRK00227 glnD PII uridylyl-tra 88.2 0.79 1.7E-05 46.0 5.1 60 144-210 632-691 (693)
104 PRK13562 acetolactate synthase 86.8 3.1 6.7E-05 30.7 6.3 66 145-210 4-70 (84)
105 CHL00100 ilvH acetohydroxyacid 86.7 3.5 7.6E-05 34.4 7.4 65 145-211 4-70 (174)
106 KOG3898 Transcription factor N 85.5 0.54 1.2E-05 41.5 2.1 55 55-109 69-126 (254)
107 PRK08178 acetolactate synthase 85.0 7.1 0.00015 29.5 7.6 66 142-210 7-74 (96)
108 PRK11899 prephenate dehydratas 84.8 6.8 0.00015 35.0 8.8 65 144-209 195-260 (279)
109 PRK11589 gcvR glycine cleavage 84.4 7.3 0.00016 32.9 8.4 67 144-210 96-167 (190)
110 COG0317 SpoT Guanosine polypho 83.6 4.6 0.0001 40.6 7.8 67 141-207 625-691 (701)
111 cd04906 ACT_ThrD-I_1 First of 83.2 11 0.00025 27.0 8.0 61 145-207 3-64 (85)
112 cd04930 ACT_TH ACT domain of t 81.9 7 0.00015 30.3 6.8 48 145-192 43-91 (115)
113 cd04892 ACT_AK-like_2 ACT doma 79.6 9.6 0.00021 24.4 6.1 46 145-192 2-50 (65)
114 PRK06382 threonine dehydratase 77.8 15 0.00033 34.3 8.8 66 141-207 328-398 (406)
115 TIGR01127 ilvA_1Cterm threonin 76.5 20 0.00043 32.9 9.2 66 141-207 303-373 (380)
116 PRK08198 threonine dehydratase 75.5 22 0.00048 33.0 9.2 66 141-207 325-395 (404)
117 COG2716 GcvR Glycine cleavage 75.3 3.2 7E-05 34.6 3.2 64 142-207 4-67 (176)
118 cd04922 ACT_AKi-HSDH-ThrA_2 AC 74.6 18 0.00038 23.8 6.4 34 145-178 3-39 (66)
119 PRK10622 pheA bifunctional cho 72.3 19 0.0004 33.7 7.9 60 148-208 302-362 (386)
120 COG0077 PheA Prephenate dehydr 71.8 23 0.00049 31.9 7.9 65 144-209 195-260 (279)
121 PRK11898 prephenate dehydratas 70.0 24 0.00052 31.5 7.8 62 145-207 198-261 (283)
122 cd04898 ACT_ACR-like_4 ACT dom 69.9 1.6 3.5E-05 31.6 0.2 41 146-186 3-45 (77)
123 COG3978 Acetolactate synthase 69.6 40 0.00087 24.8 7.4 65 144-211 4-70 (86)
124 cd04890 ACT_AK-like_1 ACT doma 65.9 29 0.00063 22.8 5.9 24 152-175 12-35 (62)
125 cd04937 ACT_AKi-DapG-BS_2 ACT 64.6 40 0.00086 22.5 7.7 28 145-172 3-33 (64)
126 PRK08526 threonine dehydratase 63.0 54 0.0012 30.7 9.0 66 141-207 324-394 (403)
127 cd04919 ACT_AK-Hom3_2 ACT doma 63.0 41 0.00089 22.1 6.5 27 152-178 13-39 (66)
128 cd04916 ACT_AKiii-YclM-BS_2 AC 58.2 49 0.0011 21.6 6.3 32 145-176 3-37 (66)
129 PRK10820 DNA-binding transcrip 56.6 17 0.00037 35.1 4.6 36 145-180 2-37 (520)
130 PF05088 Bac_GDH: Bacterial NA 56.4 81 0.0018 34.9 9.9 72 141-212 487-568 (1528)
131 cd04921 ACT_AKi-HSDH-ThrA-like 54.1 67 0.0015 22.0 6.3 59 151-211 12-70 (80)
132 PRK14639 hypothetical protein; 51.7 1.1E+02 0.0023 24.5 7.7 52 160-211 3-56 (140)
133 COG1707 ACT domain-containing 51.6 69 0.0015 27.0 6.7 37 145-181 4-40 (218)
134 PRK12483 threonine dehydratase 51.1 1.1E+02 0.0024 29.9 9.1 64 141-207 343-408 (521)
135 TIGR02079 THD1 threonine dehyd 49.3 1.2E+02 0.0026 28.3 8.9 66 141-207 323-390 (409)
136 TIGR01268 Phe4hydrox_tetr phen 48.8 92 0.002 29.8 8.0 64 144-207 17-82 (436)
137 TIGR01124 ilvA_2Cterm threonin 48.4 1.2E+02 0.0026 29.4 8.9 64 141-207 323-387 (499)
138 cd04932 ACT_AKiii-LysC-EC_1 AC 48.1 95 0.0021 21.8 7.8 56 150-210 11-66 (75)
139 PLN02317 arogenate dehydratase 48.0 1.4E+02 0.0031 28.0 9.0 35 148-182 288-322 (382)
140 cd04924 ACT_AK-Arch_2 ACT doma 47.2 77 0.0017 20.5 6.4 25 152-176 13-37 (66)
141 COG2716 GcvR Glycine cleavage 46.9 67 0.0014 26.9 6.0 67 142-208 91-162 (176)
142 TIGR01270 Trp_5_monoox tryptop 46.7 74 0.0016 30.7 7.0 64 144-207 32-97 (464)
143 COG4747 ACT domain-containing 46.4 1.2E+02 0.0027 24.0 7.1 38 145-182 5-42 (142)
144 PRK09224 threonine dehydratase 45.8 1.6E+02 0.0035 28.4 9.4 65 141-207 326-391 (504)
145 cd04923 ACT_AK-LysC-DapG-like_ 45.5 79 0.0017 20.1 5.6 24 152-175 12-35 (63)
146 cd04912 ACT_AKiii-LysC-EC-like 44.3 1E+02 0.0023 21.2 7.1 31 145-175 3-36 (75)
147 PRK14647 hypothetical protein; 44.3 1.7E+02 0.0037 23.7 8.3 52 160-211 14-67 (159)
148 PRK15385 magnesium transport p 43.1 2.2E+02 0.0048 24.7 8.9 39 142-180 141-181 (225)
149 KOG3582 Mlx interactors and re 43.1 8.3 0.00018 38.7 0.1 56 57-115 786-846 (856)
150 cd04935 ACT_AKiii-DAPDC_1 ACT 42.0 1.2E+02 0.0026 21.2 6.3 53 151-207 12-67 (75)
151 PF13840 ACT_7: ACT domain ; P 42.0 32 0.00069 23.4 2.9 34 142-175 5-42 (65)
152 KOG4447 Transcription factor T 41.6 15 0.00033 30.2 1.4 23 65-87 29-51 (173)
153 COG3283 TyrR Transcriptional r 41.6 43 0.00093 31.8 4.5 32 145-176 2-33 (511)
154 cd04936 ACT_AKii-LysC-BS-like_ 41.5 92 0.002 19.8 5.7 25 151-175 11-35 (63)
155 cd04918 ACT_AK1-AT_2 ACT domai 41.5 81 0.0018 21.1 4.9 27 152-178 12-38 (65)
156 PRK08639 threonine dehydratase 41.3 1.9E+02 0.004 27.1 8.9 66 141-207 334-401 (420)
157 cd04907 ACT_ThrD-I_2 Second of 40.7 1.3E+02 0.0029 21.4 7.7 62 144-207 2-63 (81)
158 PF09383 NIL: NIL domain; Int 40.1 1.2E+02 0.0027 20.8 8.8 50 144-194 5-55 (76)
159 PRK14637 hypothetical protein; 39.3 1.8E+02 0.004 23.5 7.4 59 153-211 7-67 (151)
160 cd04868 ACT_AK-like ACT domain 38.5 94 0.002 19.0 5.8 24 153-176 13-36 (60)
161 PF02344 Myc-LZ: Myc leucine z 37.6 38 0.00083 20.4 2.3 19 64-82 11-29 (32)
162 COG2061 ACT-domain-containing 37.3 1.6E+02 0.0035 24.3 6.7 48 144-191 6-56 (170)
163 PRK00092 ribosome maturation p 36.2 2.3E+02 0.0049 22.8 8.0 53 160-212 13-67 (154)
164 PRK06349 homoserine dehydrogen 36.2 1.6E+02 0.0034 27.8 7.5 34 143-176 348-381 (426)
165 KOG3582 Mlx interactors and re 34.3 10 0.00022 38.2 -0.8 58 57-114 650-712 (856)
166 cd04915 ACT_AK-Ectoine_2 ACT d 33.9 1.5E+02 0.0032 20.0 5.4 24 153-176 14-37 (66)
167 PRK14644 hypothetical protein; 33.3 2.1E+02 0.0046 22.7 6.8 49 162-211 6-54 (136)
168 cd07940 DRE_TIM_IPMS 2-isoprop 32.9 1.8E+02 0.0038 25.4 6.9 54 144-208 190-244 (268)
169 cd04871 ACT_PSP_2 ACT domains 32.8 52 0.0011 23.6 3.0 63 146-210 2-74 (84)
170 PRK14632 hypothetical protein; 32.8 2.8E+02 0.0061 22.9 7.8 49 162-211 16-66 (172)
171 PRK14630 hypothetical protein; 32.5 2.6E+02 0.0057 22.4 7.7 56 157-212 11-68 (143)
172 cd04913 ACT_AKii-LysC-BS-like_ 31.0 1.5E+02 0.0033 19.2 5.3 25 150-174 9-33 (75)
173 COG0440 IlvH Acetolactate synt 30.9 1.8E+02 0.0039 24.1 6.1 68 145-213 6-74 (163)
174 PRK14633 hypothetical protein; 30.3 2.9E+02 0.0063 22.2 8.0 53 158-211 8-62 (150)
175 PLN02550 threonine dehydratase 29.3 2.8E+02 0.0061 27.6 8.2 63 142-207 416-479 (591)
176 cd04920 ACT_AKiii-DAPDC_2 ACT 29.1 1.5E+02 0.0032 19.8 4.6 21 152-172 12-32 (63)
177 cd07937 DRE_TIM_PC_TC_5S Pyruv 28.3 1.6E+02 0.0034 25.9 5.8 53 144-207 193-246 (275)
178 cd07943 DRE_TIM_HOA 4-hydroxy- 27.9 1.9E+02 0.0041 25.0 6.2 53 144-207 186-239 (263)
179 PRK14645 hypothetical protein; 27.8 3.3E+02 0.0072 22.1 8.8 55 156-211 11-70 (154)
180 cd04917 ACT_AKiii-LysC-EC_2 AC 27.0 1.9E+02 0.0041 19.0 6.3 27 145-171 3-32 (64)
181 PRK08818 prephenate dehydrogen 26.7 4E+02 0.0086 24.8 8.4 45 146-191 298-343 (370)
182 PRK14640 hypothetical protein; 26.4 3.4E+02 0.0075 21.8 7.4 53 159-211 11-65 (152)
183 PRK14634 hypothetical protein; 25.7 3.3E+02 0.0071 22.1 6.8 52 160-211 13-68 (155)
184 PRK14638 hypothetical protein; 25.6 3.6E+02 0.0078 21.7 7.8 52 160-211 14-68 (150)
185 COG3074 Uncharacterized protei 25.2 1.1E+02 0.0024 21.9 3.3 23 96-118 13-35 (79)
186 PRK10222 PTS system L-ascorbat 24.3 1.7E+02 0.0037 21.1 4.4 53 159-211 6-78 (85)
187 PF05088 Bac_GDH: Bacterial NA 23.7 5E+02 0.011 29.0 9.4 69 142-210 16-105 (1528)
188 PRK14646 hypothetical protein; 23.3 4E+02 0.0088 21.5 7.7 55 157-211 10-68 (155)
189 PF06005 DUF904: Protein of un 23.1 1.2E+02 0.0027 21.5 3.4 22 96-117 13-34 (72)
190 PF14689 SPOB_a: Sensor_kinase 22.3 2.6E+02 0.0056 18.9 5.6 44 64-114 14-57 (62)
191 cd04934 ACT_AK-Hom3_1 CT domai 22.1 2.8E+02 0.0061 19.2 6.5 51 153-207 14-65 (73)
192 COG0779 Uncharacterized protei 21.7 3E+02 0.0066 22.4 5.8 49 162-211 16-67 (153)
193 COG4747 ACT domain-containing 21.1 1.2E+02 0.0027 24.1 3.2 26 146-171 72-97 (142)
194 TIGR02090 LEU1_arch isopropylm 20.9 3.2E+02 0.007 25.1 6.6 39 144-183 185-224 (363)
195 PF14357 DUF4404: Domain of un 20.6 47 0.001 24.3 0.8 85 72-169 1-85 (85)
196 PRK11790 D-3-phosphoglycerate 20.5 1.6E+02 0.0035 27.6 4.6 61 143-207 338-398 (409)
197 PRK15422 septal ring assembly 20.3 1.5E+02 0.0032 21.7 3.3 23 96-118 13-35 (79)
198 PF02576 DUF150: Uncharacteris 20.0 4.3E+02 0.0094 20.6 7.7 50 162-211 4-55 (141)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.48 E-value=8.4e-14 Score=95.33 Aligned_cols=53 Identities=43% Similarity=0.713 Sum_probs=50.0
Q ss_pred HhhhccHHHHHHHHHHHHhHHHHHhhCCCC---CcCChhhhhHHHHHHHHHHHHHH
Q 040546 58 AAKKHSEAERRRRLRINDQYDNLRKILPNL---VKVDKASVLAKTIKTVRELQRTV 110 (225)
Q Consensus 58 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~---~k~dK~sil~~ai~yi~~L~~~~ 110 (225)
.+..|+.+||+||++||+.|..|+++||.. .+.||++||..||+||+.|+.++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999977 89999999999999999999876
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.47 E-value=8.1e-14 Score=94.52 Aligned_cols=49 Identities=53% Similarity=0.819 Sum_probs=46.0
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHhhCCCC-----CcCChhhhhHHHHHHHHHHH
Q 040546 59 AKKHSEAERRRRLRINDQYDNLRKILPNL-----VKVDKASVLAKTIKTVRELQ 107 (225)
Q Consensus 59 ~~~h~~~Er~RR~~in~~~~~Lr~lvP~~-----~k~dK~sil~~ai~yi~~L~ 107 (225)
+..|+..||+||++||+.|..|+.+||.. .+.||++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 56899999999999999999999999965 68999999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.43 E-value=2.8e-13 Score=90.86 Aligned_cols=49 Identities=39% Similarity=0.674 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHhHHHHHhhCCC---CCcCChhhhhHHHHHHHHHHHHHHH
Q 040546 63 SEAERRRRLRINDQYDNLRKILPN---LVKVDKASVLAKTIKTVRELQRTVR 111 (225)
Q Consensus 63 ~~~Er~RR~~in~~~~~Lr~lvP~---~~k~dK~sil~~ai~yi~~L~~~~~ 111 (225)
+..||+||++||+.|..|+++||. ..+.||++||.+||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999994 6799999999999999999999876
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.15 E-value=1e-10 Score=108.05 Aligned_cols=59 Identities=34% Similarity=0.582 Sum_probs=52.2
Q ss_pred HhHHHhhhccHHHHHHHHHHHHhHHHHHhhCCCC----CcCChhhhhHHHHHHHHHHHHHHHH
Q 040546 54 AKELAAKKHSEAERRRRLRINDQYDNLRKILPNL----VKVDKASVLAKTIKTVRELQRTVRE 112 (225)
Q Consensus 54 ~~~~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~----~k~dK~sil~~ai~yi~~L~~~~~~ 112 (225)
+...++.+||+.|||||++||++|.+|..|||.+ .+..|.+||..+++||++|++..++
T Consensus 229 rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 229 RDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 3445679999999999999999999999999966 3566999999999999999998774
No 5
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.15 E-value=3.9e-10 Score=81.57 Aligned_cols=67 Identities=21% Similarity=0.339 Sum_probs=60.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC-----ccHHHHHHHHHHhhcC
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN-----EGMVMLKRALNLVIDR 211 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~-----~~~~~Lk~aL~~vi~~ 211 (225)
.|+|.|++|||||.+|..+|..+|++|.+|.|+|.|+++.++|++....|. .....|+++|..++++
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999999999988763 2367888999888874
No 6
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.07 E-value=1.3e-09 Score=78.80 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=59.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--EeCCEEEEEEEEEeccC-C----ccHHHHHHHHHHhhcCC
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV--PVGGRIKCVLWVQGFKG-N----EGMVMLKRALNLVIDRP 212 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~is--t~~grv~~~~~v~~~~g-~----~~~~~Lk~aL~~vi~~~ 212 (225)
.++|.|.+|||||.+|.++|..+|++|..|.|+ |.|+++.++|++ ..+| . .....|+++|..++++|
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 588999999999999999999999999999999 999999999999 5444 2 34678999999998864
No 7
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.98 E-value=5.2e-09 Score=75.13 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=48.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN 195 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~ 195 (225)
..|+|.+++|||||.+|.++|..+||+|..|.|+|.|+++.++|+|....|.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~ 53 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGN 53 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCC
Confidence 4689999999999999999999999999999999999999999999987664
No 8
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.90 E-value=1.5e-08 Score=73.08 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=57.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-eCCEEEEEEEEEeccCC----ccHHHHHHHHHHhhc
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP-VGGRIKCVLWVQGFKGN----EGMVMLKRALNLVID 210 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist-~~grv~~~~~v~~~~g~----~~~~~Lk~aL~~vi~ 210 (225)
+.++|.|++|||||.+|..+|..+|++|.+|.|+| .+|+++++|+|....+. ....+++++|..++-
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLG 72 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999996 89999999999876544 235667777777664
No 9
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.81 E-value=6.5e-09 Score=86.47 Aligned_cols=63 Identities=32% Similarity=0.524 Sum_probs=54.4
Q ss_pred hHHHhhhccHHHHHHHHHHHHhHHHHHhhCCCCC-------cCChhhhhHHHHHHHHHHHHHHHHHHhhh
Q 040546 55 KELAAKKHSEAERRRRLRINDQYDNLRKILPNLV-------KVDKASVLAKTIKTVRELQRTVREQKALC 117 (225)
Q Consensus 55 ~~~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~~-------k~dK~sil~~ai~yi~~L~~~~~~l~~~~ 117 (225)
++.++..|-.+||+||+.||..|..|..|||.+. |+.||.||.++|+||..|++++.+-+.+.
T Consensus 59 k~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~ 128 (229)
T KOG1319|consen 59 KDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEV 128 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567789999999999999999999999999542 67799999999999999998877655443
No 10
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.77 E-value=8.8e-08 Score=68.22 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=53.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe-CCEEEEEEEEEeccCC-c----cHHHHHHHHHHh
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV-GGRIKCVLWVQGFKGN-E----GMVMLKRALNLV 208 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~-~grv~~~~~v~~~~g~-~----~~~~Lk~aL~~v 208 (225)
..|.|.|++++|||.+|..+|..+|++|+.|.|.|. +|++.++|++....+. . ....|+++|.++
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~ 72 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDA 72 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhh
Confidence 468899999999999999999999999999999888 6999999999865442 2 244566666554
No 11
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.69 E-value=2.1e-08 Score=87.93 Aligned_cols=58 Identities=31% Similarity=0.566 Sum_probs=50.6
Q ss_pred hHHHhhhccHHHHHHHHHHHHhHHHHHhhCCC--------CCcCChhhhhHHHHHHHHHHHHHHHH
Q 040546 55 KELAAKKHSEAERRRRLRINDQYDNLRKILPN--------LVKVDKASVLAKTIKTVRELQRTVRE 112 (225)
Q Consensus 55 ~~~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~--------~~k~dK~sil~~ai~yi~~L~~~~~~ 112 (225)
+..++..|.+.||+||+|||+.|.+|+.|||. .+|.+||.||+-|++|++.|+.....
T Consensus 29 ~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 29 RQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 34467899999999999999999999999992 26889999999999999999986553
No 12
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.66 E-value=3.4e-07 Score=65.58 Aligned_cols=66 Identities=24% Similarity=0.463 Sum_probs=57.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEecc-CC-----ccHHHHHHHHHHhhc
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFK-GN-----EGMVMLKRALNLVID 210 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~-g~-----~~~~~Lk~aL~~vi~ 210 (225)
.++|.+++|||+|.+|..+|..+|++|+.|.+.|.++.+.++|+|.... +. .-...|+++|.+++.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 5889999999999999999999999999999999999999999998653 32 235778888887764
No 13
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.44 E-value=2.3e-07 Score=92.28 Aligned_cols=53 Identities=28% Similarity=0.442 Sum_probs=48.8
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHhhCCCC----CcCChhhhhHHHHHHHHHHHHH
Q 040546 57 LAAKKHSEAERRRRLRINDQYDNLRKILPNL----VKVDKASVLAKTIKTVRELQRT 109 (225)
Q Consensus 57 ~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~----~k~dK~sil~~ai~yi~~L~~~ 109 (225)
..+++|+.+|||||+++|..+.+|.+|||.+ -|+||.+||..||.+|+.+++.
T Consensus 19 ~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 19 KKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred hccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 3478999999999999999999999999955 5999999999999999999875
No 14
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.40 E-value=3.6e-06 Score=58.53 Aligned_cols=64 Identities=27% Similarity=0.424 Sum_probs=53.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC----ccHHHHHHHHHHh
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN----EGMVMLKRALNLV 208 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~----~~~~~Lk~aL~~v 208 (225)
.+.|.|++++|+|.+|+.+|.+++++|.++.+.+.++.+.+.|++....+. .-...|+++|..+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 578899999999999999999999999999999999999999999876543 1244566666554
No 15
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.37 E-value=5.7e-06 Score=58.77 Aligned_cols=64 Identities=27% Similarity=0.348 Sum_probs=54.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-EeCCEEEEEEEEEeccCCccHHHHHHHHHHhh
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV-PVGGRIKCVLWVQGFKGNEGMVMLKRALNLVI 209 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~is-t~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi 209 (225)
.|.|.|+++||+|..|..+|..+||+|+.|.+. +.+|.++++|+|....+ .....|.++|..++
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~-~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKR-GETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCc-cchHHHHHHHHHhh
Confidence 577899999999999999999999999999986 55789999999997644 44577888887765
No 16
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.30 E-value=9.7e-07 Score=78.43 Aligned_cols=61 Identities=28% Similarity=0.442 Sum_probs=53.2
Q ss_pred HHhHHHhhhccHHHHHHHHHHHHhHHHHHhhCCCC--CcCChhhhhHHHHHHHHHHHHHHHHH
Q 040546 53 EAKELAAKKHSEAERRRRLRINDQYDNLRKILPNL--VKVDKASVLAKTIKTVRELQRTVREQ 113 (225)
Q Consensus 53 ~~~~~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~--~k~dK~sil~~ai~yi~~L~~~~~~l 113 (225)
.++..++.--|.-||||...||..|..||+|+|.. .|.+||+||+.+.+||.+|....-+|
T Consensus 55 ~erRmRReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 55 PERRMRREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHHHHHHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 34556777888899999999999999999999955 79999999999999999998866544
No 17
>PRK05007 PII uridylyl-transferase; Provisional
Probab=98.27 E-value=4.1e-06 Score=85.22 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=62.9
Q ss_pred cCCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC----ccHHHHHHHHHHhhcC
Q 040546 139 RDRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN----EGMVMLKRALNLVIDR 211 (225)
Q Consensus 139 ~~e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~----~~~~~Lk~aL~~vi~~ 211 (225)
..+....|+|.|.+|||||.+|.++|.++|++|.+|.|+|.|+++.++|+|....|. .....|+++|..+++.
T Consensus 804 ~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 804 HTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALNP 880 (884)
T ss_pred CCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence 345568899999999999999999999999999999999999999999999987664 2256778888877753
No 18
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.21 E-value=2.2e-05 Score=55.74 Aligned_cols=67 Identities=27% Similarity=0.324 Sum_probs=52.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
..+.|.+++++|+|.+|..+|.+++++|++|.+.+.++.++.+|.+....+.....+..++|.+.|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHhc
Confidence 4678899999999999999999999999999999998999999999865443112234444555554
No 19
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.16 E-value=4.3e-06 Score=72.53 Aligned_cols=59 Identities=25% Similarity=0.470 Sum_probs=49.7
Q ss_pred HHHhhhccHHHHHHHHHHHHhHHHHHhhCCCC-C-cCC-hhhhhHHHHHHHHHHHHHHHHHH
Q 040546 56 ELAAKKHSEAERRRRLRINDQYDNLRKILPNL-V-KVD-KASVLAKTIKTVRELQRTVREQK 114 (225)
Q Consensus 56 ~~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~-~-k~d-K~sil~~ai~yi~~L~~~~~~l~ 114 (225)
..++..||.-||+||+.|.+.|..|+.+||.. + +.. .++||..|.+||+.|+.+..+..
T Consensus 57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~ 118 (232)
T KOG2483|consen 57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQ 118 (232)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHH
Confidence 44678999999999999999999999999966 2 222 58999999999999998766443
No 20
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=98.12 E-value=1.2e-05 Score=81.57 Aligned_cols=70 Identities=17% Similarity=0.266 Sum_probs=59.8
Q ss_pred CCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC----ccHHHHHHHHHHhh
Q 040546 140 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN----EGMVMLKRALNLVI 209 (225)
Q Consensus 140 ~e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~----~~~~~Lk~aL~~vi 209 (225)
.+....|+|.+.+|||||.+|.++|.++|++|..|.|+|.|+++.++|+|....|. ....+|+++|..+|
T Consensus 780 s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 780 KQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred CCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 34568899999999999999999999999999999999999999999999987664 22366777776654
No 21
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=98.07 E-value=2.7e-05 Score=79.42 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=63.4
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC-----ccHHHHHHHHHHhhcCCC
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN-----EGMVMLKRALNLVIDRPV 213 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~-----~~~~~Lk~aL~~vi~~~~ 213 (225)
.+...|+|.+.+|||||.+|..+|..+|++|+.|.|+|.|+++.++|+|....|. .....|+++|..++....
T Consensus 812 ~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~ 889 (895)
T PRK00275 812 RPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARN 889 (895)
T ss_pred CCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 4568899999999999999999999999999999999999999999999976553 235678888888886543
No 22
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.04 E-value=6.8e-05 Score=51.55 Aligned_cols=64 Identities=27% Similarity=0.398 Sum_probs=51.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC----ccHHHHHHHHHHh
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN----EGMVMLKRALNLV 208 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~----~~~~~Lk~aL~~v 208 (225)
.+.|.|++++|+|.+|+.+|.++++.|.++.+.+.++.....|.+...++. .....|+++|..+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 477899999999999999999999999999999988888888888875543 2344455555543
No 23
>PRK04374 PII uridylyl-transferase; Provisional
Probab=98.00 E-value=5.8e-05 Score=76.77 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=62.2
Q ss_pred cCCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC----ccHHHHHHHHHHhhc
Q 040546 139 RDRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN----EGMVMLKRALNLVID 210 (225)
Q Consensus 139 ~~e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~----~~~~~Lk~aL~~vi~ 210 (225)
.......|+|.+.+|||||.+|..+|..+|++|..|.|+|.++++.++|+|....|. ....+|+++|..+|+
T Consensus 792 ~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~ 867 (869)
T PRK04374 792 AGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACLD 867 (869)
T ss_pred CCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence 334678999999999999999999999999999999999999999999999976553 234788888888775
No 24
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.86 E-value=7.9e-05 Score=75.74 Aligned_cols=70 Identities=17% Similarity=0.262 Sum_probs=60.3
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC--ccHHHHHHHHHHhhc
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVID 210 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~--~~~~~Lk~aL~~vi~ 210 (225)
.+...|+|.|.+|||||.+|..+|..+|++|+.|.|+|.+|++.++|+|...+.. .-...|+++|..+|+
T Consensus 784 ~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 784 GQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred CCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence 4568899999999999999999999999999999999999999999999644321 346788888888775
No 25
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.86 E-value=0.00017 Score=51.65 Aligned_cols=66 Identities=18% Similarity=0.306 Sum_probs=55.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
.+.|++.+++|||++..|..+|.++|.++..++.++.+|.+.-.+.+... ....+.|+.+|..+-.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--~~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--EDSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--cccHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999888888876 2367889999887754
No 26
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.81 E-value=0.0002 Score=73.42 Aligned_cols=71 Identities=24% Similarity=0.377 Sum_probs=63.0
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC-----ccHHHHHHHHHHhhcC
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN-----EGMVMLKRALNLVIDR 211 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~-----~~~~~Lk~aL~~vi~~ 211 (225)
.....|+|.|.++||+|.+|..+|.++|++|.+|.|.|.++++.++|++....|. .....|+++|..+|..
T Consensus 841 ~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 841 NRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred CCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 4568899999999999999999999999999999999999999999999876553 2367899999999964
No 27
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.80 E-value=0.00014 Score=49.34 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=47.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCC--EEEEEEEEEeccCCccHHHHHHHHHHhh
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG--RIKCVLWVQGFKGNEGMVMLKRALNLVI 209 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~g--rv~~~~~v~~~~g~~~~~~Lk~aL~~vi 209 (225)
.|.+.|+++||+|.+|.++|.++|+.|.++.+.+.++ ....++.... ......+.++|+++.
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---EEDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---GHGHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---CCCHHHHHHHHHccc
Confidence 5788999999999999999999999999999999887 2222222222 244677788877653
No 28
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.79 E-value=0.00024 Score=72.13 Aligned_cols=73 Identities=23% Similarity=0.205 Sum_probs=63.7
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-EeCCEEEEEEEEEeccCC----c-cHHHHHHHHHHhhcCCC
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV-PVGGRIKCVLWVQGFKGN----E-GMVMLKRALNLVIDRPV 213 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~is-t~~grv~~~~~v~~~~g~----~-~~~~Lk~aL~~vi~~~~ 213 (225)
.+...|.|.+++++|+|.+|..+|..+|++|++|.|. |.+|+++++|+|....|. . -...|+++|..++....
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~ 744 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLA 744 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCC
Confidence 4667899999999999999999999999999999998 889999999999976553 1 26678999999998744
No 29
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.77 E-value=0.00014 Score=73.29 Aligned_cols=54 Identities=24% Similarity=0.409 Sum_probs=50.7
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC
Q 040546 142 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN 195 (225)
Q Consensus 142 ~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~ 195 (225)
+...|+|.|.++||||.+|..+|..+|++|++|.|+|.|+++.++|+|....|.
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~ 759 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGG 759 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCC
Confidence 458899999999999999999999999999999999999999999999987664
No 30
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.71 E-value=0.00028 Score=71.78 Aligned_cols=74 Identities=19% Similarity=0.322 Sum_probs=63.6
Q ss_pred CCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-eCCEEEEEEEEEeccCC----ccHHHHHHHHHHhhcCCC
Q 040546 140 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP-VGGRIKCVLWVQGFKGN----EGMVMLKRALNLVIDRPV 213 (225)
Q Consensus 140 ~e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist-~~grv~~~~~v~~~~g~----~~~~~Lk~aL~~vi~~~~ 213 (225)
..+...|.|.|++++|||.+|..+|..+|++|+.|.|.| .+|.++++|+|....|. .....|+++|.+++....
T Consensus 674 ~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~~ 752 (854)
T PRK01759 674 SRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTNK 752 (854)
T ss_pred CCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 345688999999999999999999999999999999876 89999999999977553 235578999999998654
No 31
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=9.8e-05 Score=73.58 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=62.0
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhhcCCCCC
Q 040546 142 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDRPVSP 215 (225)
Q Consensus 142 ~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~~~~~p 215 (225)
....+++.+.+|||||..|..+|.+++|++.+|.|+|+|.++.++|++....+..-..++++.|.+.+-....|
T Consensus 790 ~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~ 863 (867)
T COG2844 790 DKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAELRQSLLQRLLEALLP 863 (867)
T ss_pred CceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCCHHHHHHHHHHHHHHhcc
Confidence 45788999999999999999999999999999999999999999999999877543566666666655544443
No 32
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.67 E-value=0.00025 Score=71.97 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=58.8
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC----ccHHHHHHHHHHhh
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN----EGMVMLKRALNLVI 209 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~----~~~~~Lk~aL~~vi 209 (225)
+....++|.|.+|||+|.+|.++|..+|++|.+|.|+|.++++.++|++....|. .....|+++|..++
T Consensus 777 ~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 777 RKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred CCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 4568899999999999999999999999999999999999999999999876553 23566666666554
No 33
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.65 E-value=1.8e-05 Score=79.44 Aligned_cols=58 Identities=31% Similarity=0.448 Sum_probs=52.9
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHhhCCCC-CcCChhhhhHHHHHHHHHHHHHHHHHH
Q 040546 57 LAAKKHSEAERRRRLRINDQYDNLRKILPNL-VKVDKASVLAKTIKTVRELQRTVREQK 114 (225)
Q Consensus 57 ~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~-~k~dK~sil~~ai~yi~~L~~~~~~l~ 114 (225)
.++.+||..|||-|..||+++.+|+.+||.. .|..|.++|..||+||++|+...+.+.
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk 333 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLK 333 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccc
Confidence 5688999999999999999999999999976 899999999999999999998666554
No 34
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.63 E-value=0.00048 Score=70.32 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=61.6
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CEEEEEEEEEeccCC----ccHHHHHHHHHHhhcCC
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQGFKGN----EGMVMLKRALNLVIDRP 212 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~-grv~~~~~v~~~~g~----~~~~~Lk~aL~~vi~~~ 212 (225)
.+...|.|.|++++|+|.+|..+|..+|++|+.|.|.|.+ |.++++|+|....|. .....|+++|.+++...
T Consensus 699 ~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~ 775 (884)
T PRK05007 699 RGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQALTQS 775 (884)
T ss_pred CCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 4578999999999999999999999999999999987665 599999999987653 23466899999999765
No 35
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.61 E-value=0.00039 Score=70.04 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=64.0
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC-ccHHHHHHHHHHhhcCC
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN-EGMVMLKRALNLVIDRP 212 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~-~~~~~Lk~aL~~vi~~~ 212 (225)
.+.+.|.|.|.+|||+|.+|..+|..+|++|++|+|.|.+|.++++|+|....|. .....++++|.+++...
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~~~ 669 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRALDGD 669 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHHHcCC
Confidence 4568899999999999999999999999999999999999999999999976553 44688999999998874
No 36
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.58 E-value=0.0002 Score=52.64 Aligned_cols=47 Identities=36% Similarity=0.456 Sum_probs=39.0
Q ss_pred HHHHHhHHHHHhhCCCC------CcCChhhhhHHHHHHHHHHHHHHHHHHhhh
Q 040546 71 LRINDQYDNLRKILPNL------VKVDKASVLAKTIKTVRELQRTVREQKALC 117 (225)
Q Consensus 71 ~~in~~~~~Lr~lvP~~------~k~dK~sil~~ai~yi~~L~~~~~~l~~~~ 117 (225)
+.||+.+..|+.|+|.. .+..-+-+|.+|+.||+.|+.+|.+|....
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerL 72 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 72 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999943 233344489999999999999999997654
No 37
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.57 E-value=0.001 Score=47.78 Aligned_cols=65 Identities=20% Similarity=0.345 Sum_probs=55.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
+.+.+.|+++||+...|.+.|.+.|+.|+.++....++.++-.+.+... ..+...|+++|..+-.
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~~~~~~l~~~l~~~~~ 66 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--WDAIAKLEAALPGLAR 66 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--cccHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999988877777654 2467888888877544
No 38
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.49 E-value=0.00014 Score=62.80 Aligned_cols=57 Identities=25% Similarity=0.400 Sum_probs=50.5
Q ss_pred HhhhccHHHHHHHHHHHHhHHHHHhhCCC----CCcCChhhhhHHHHHHHHHHHHHHHHHH
Q 040546 58 AAKKHSEAERRRRLRINDQYDNLRKILPN----LVKVDKASVLAKTIKTVRELQRTVREQK 114 (225)
Q Consensus 58 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP~----~~k~dK~sil~~ai~yi~~L~~~~~~l~ 114 (225)
.+..++..||+|=.-+|..|..||.+||. ..|..|..+|.-||.||+.|++-++.-+
T Consensus 109 ~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 109 QRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred hhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence 45678888999999999999999999993 5678999999999999999999888654
No 39
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.49 E-value=0.0011 Score=67.39 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=62.6
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE-EEeCCEEEEEEEEEeccCC----ccHHHHHHHHHHhhcCCC
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEM-VPVGGRIKCVLWVQGFKGN----EGMVMLKRALNLVIDRPV 213 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~i-st~~grv~~~~~v~~~~g~----~~~~~Lk~aL~~vi~~~~ 213 (225)
.+...|.|.|++++|+|.+|..+|..+|++|+.|.| ++.+|.++++|+|....+. .-...|+++|.+++.+..
T Consensus 676 ~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~~ 753 (856)
T PRK03059 676 GEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLAEQA 753 (856)
T ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCCC
Confidence 466899999999999999999999999999999999 5678999999999876543 236778999999997643
No 40
>PRK00194 hypothetical protein; Validated
Probab=97.45 E-value=0.00082 Score=49.28 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=54.0
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
.+.+.+.|+++||++.+|.+.|.++|++|...+..+.++.....+.+.......+...|++.|..+-.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~ 70 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGK 70 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999988877766665555544213457888888877544
No 41
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.40 E-value=0.00047 Score=60.17 Aligned_cols=60 Identities=25% Similarity=0.414 Sum_probs=49.7
Q ss_pred HhhhccHHHHHHHHHHHHhHHHHH-hhCCCC-CcCChhhhhHHHHHHHHHHHHHHHHHHhhh
Q 040546 58 AAKKHSEAERRRRLRINDQYDNLR-KILPNL-VKVDKASVLAKTIKTVRELQRTVREQKALC 117 (225)
Q Consensus 58 ~~~~h~~~Er~RR~~in~~~~~Lr-~lvP~~-~k~dK~sil~~ai~yi~~L~~~~~~l~~~~ 117 (225)
+++.--+.||||=.|+|+.|.+|+ .-.+|- -..-|+-||..||+||..||.-++++....
T Consensus 118 RRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 118 RRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 456667899999999999999994 445554 456899999999999999999999886543
No 42
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.39 E-value=0.00097 Score=48.84 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=55.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhhcC
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 211 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~~ 211 (225)
+.+++.|+++||++..|.+.|.++|++|...+..+.++.++..+.+....-..+...|+.+|..+-..
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~ 69 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELGKE 69 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999888888777666666542135678888888776543
No 43
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.32 E-value=0.0028 Score=64.76 Aligned_cols=73 Identities=21% Similarity=0.123 Sum_probs=63.0
Q ss_pred CCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-eCCEEEEEEEEEeccCC--ccHHHHHHHHHHhhcCC
Q 040546 140 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP-VGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDRP 212 (225)
Q Consensus 140 ~e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist-~~grv~~~~~v~~~~g~--~~~~~Lk~aL~~vi~~~ 212 (225)
..+.+.|.|.|.+++|||..|..+|..+|++|+.|.|.| .+|.++++|+|....+. .....|+++|.+++.+.
T Consensus 687 ~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~~ 762 (869)
T PRK04374 687 DNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLAGD 762 (869)
T ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcCC
Confidence 346688999999999999999999999999999999876 68999999999976553 44667899999999864
No 44
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.28 E-value=0.0015 Score=66.76 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=61.2
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE-EEeCCEEEEEEEEEeccCC------ccHHHHHHHHHHhhcCCC
Q 040546 142 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEM-VPVGGRIKCVLWVQGFKGN------EGMVMLKRALNLVIDRPV 213 (225)
Q Consensus 142 ~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~i-st~~grv~~~~~v~~~~g~------~~~~~Lk~aL~~vi~~~~ 213 (225)
+...|.|.|.++||+|.+|..+|..+|++|+.|.| ++-+|.++++|+|....|. .-...|+++|.+++....
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~ 781 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPD 781 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCC
Confidence 56889999999999999999999999999999997 6667899999999876553 135668899999987543
No 45
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.28 E-value=0.0017 Score=45.33 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=53.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccC--CccHHHHHHHHHHh
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKG--NEGMVMLKRALNLV 208 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g--~~~~~~Lk~aL~~v 208 (225)
.|+|.|+++.||-.||.+.+-++||.|++..++|-|...+-+|+|..... ...-..||+.|.++
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 57899999999999999999999999999999999998888888876422 24466777777654
No 46
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.27 E-value=0.0037 Score=44.50 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=52.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC------CEEEEEEEEEeccCCccHHHHHHHHHHhhcC
Q 040546 146 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG------GRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 211 (225)
Q Consensus 146 I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~------grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~~ 211 (225)
|++.|++++|++.+|.+.|.++|++|.+.+..+.+ +.+.-.+.+... +..+..+++.+|..+-.+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~~~~~~l~~~l~~l~~~ 72 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AGTDLDALREELEELCDD 72 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999998887 555555555544 345688898888876543
No 47
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.27 E-value=0.0027 Score=45.12 Aligned_cols=64 Identities=22% Similarity=0.250 Sum_probs=54.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 146 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 146 I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
|++.+.+|||+..+|.++|.++|+++...+.++.++.+.-.+.+....+ .....|+++|...-.
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~-~~~~~l~~~l~~l~~ 65 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS-ADSEALLKDLLFKAH 65 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC-CCHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999988777676665433 568889988887654
No 48
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.25 E-value=0.0041 Score=43.90 Aligned_cols=65 Identities=20% Similarity=0.187 Sum_probs=46.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe-CCEEEEE-EEEEeccCCccHHHHHHHHHHhhc
Q 040546 146 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV-GGRIKCV-LWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 146 I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~-~grv~~~-~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
|++.|++++|++.+|.+.|.++|+.+...+..+. ++..+.. +.+....+..+...|+++|..+-.
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~ 68 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAA 68 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999999999999988752 2222322 222222222568899988887654
No 49
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.22 E-value=0.0015 Score=46.67 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=47.1
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 142 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 142 ~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~--~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
..+.++|.+.+++|+|.+|+.++.+.|+.+.+.++.+. ++.+.-.+.+... +...+..|-++|++
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-DLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-SHHHHHHHHHHHCT
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-CHHHHHHHHHHHHC
Confidence 45789999999999999999999999999999999885 5666666666653 33445555555543
No 50
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.06 E-value=0.0049 Score=63.35 Aligned_cols=71 Identities=25% Similarity=0.446 Sum_probs=60.6
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-eCCEEEEEEEEEeccCC-----ccHHHHHHHHHHhhcC
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP-VGGRIKCVLWVQGFKGN-----EGMVMLKRALNLVIDR 211 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist-~~grv~~~~~v~~~~g~-----~~~~~Lk~aL~~vi~~ 211 (225)
.+...|.|.|++++|+|.+|..+|..+|++|+.|.|.| .+|.++++|+|....|. .....|.++|..++.+
T Consensus 730 ~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~ 806 (931)
T PRK05092 730 RGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSG 806 (931)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 35689999999999999999999999999999999877 68899999999865442 2377889999998864
No 51
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.82 E-value=0.012 Score=41.09 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=45.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CEEEEEEEEEeccCCccHHHHHHHHHHh
Q 040546 146 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 146 I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~-grv~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
+++.+.+++|+|.+|+.+|.+.|..+.+.++.... +...-.+.++.. +...+..+.++|+++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-~~~~l~~i~~~L~~i 64 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-SEEHAETIVAAVRAL 64 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-CHHHHHHHHHHHhcC
Confidence 67889999999999999999999999999887764 555444555443 334455666666543
No 52
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.76 E-value=0.013 Score=39.84 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=42.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe-----CCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 146 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV-----GGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 146 I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~-----~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
+.|.++++||.|.+|+++|.+.|++|.+.+.... .+.....+.+... +...+..+.++|++
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-GAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-CHHHHHHHHHHHHH
Confidence 3578899999999999999999999998887654 2444444455542 22345566666654
No 53
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.68 E-value=0.011 Score=41.26 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=46.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe-CCEEEEEEEEEeccCCccHHHHHHHHHHh
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV-GGRIKCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~-~grv~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
.+.+.+++++|++.+|+++|.+.++++...+.... ++...-.|.+...+....+..|.++|+++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i 66 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREI 66 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcC
Confidence 57888999999999999999999999998876553 35455555665542223567777777653
No 54
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.25 E-value=0.042 Score=49.18 Aligned_cols=69 Identities=22% Similarity=0.273 Sum_probs=54.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--eCCEEEEEEEEEeccCCccHHHHHHHHHHhhcC
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP--VGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 211 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist--~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~~ 211 (225)
.+.|++.|+||+|+..+|.++|.++|+.+...+.++ .+|.+.-.+.+.......+...|+++|..+-+.
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~ 76 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAEE 76 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999 888544333443322345688899888877654
No 55
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.08 E-value=0.029 Score=39.56 Aligned_cols=59 Identities=20% Similarity=0.261 Sum_probs=41.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
.++|.|.+++|++.+|+.++.+.++.+.+.++.+- +. . .+.+... +...+..|..+|++
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~-i-~l~i~v~-~~~~L~~li~~L~~ 60 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR-I-YLNFPTI-EFEKLQTLMPEIRR 60 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce-E-EEEeEec-CHHHHHHHHHHHhC
Confidence 47889999999999999999999999999998765 43 2 2333322 22334555555554
No 56
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.05 E-value=0.035 Score=38.21 Aligned_cols=62 Identities=8% Similarity=0.102 Sum_probs=42.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~--grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
.+++.+.+++|++.+|+..|.+.++.+.+.+..+.. +...-.+.+... ....+..+.++|++
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET-SEAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC-CHHHHHHHHHHHHc
Confidence 578899999999999999999999999988876653 333333333332 22334445555554
No 57
>PRK04435 hypothetical protein; Provisional
Probab=95.98 E-value=0.056 Score=43.73 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=52.7
Q ss_pred cCCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe-CCEEEEEEEEEeccCCccHHHHHHHHHHh
Q 040546 139 RDRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV-GGRIKCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 139 ~~e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~-~grv~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
..+..+.+.+.+++++|+|.+|+++|.+.|++|...+.+.. +|...-.|.+...+....+.+|-.+|+++
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i 135 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNL 135 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcC
Confidence 34667999999999999999999999999999998876543 56555566666643333567777777653
No 58
>PRK08577 hypothetical protein; Provisional
Probab=95.77 E-value=0.19 Score=39.84 Aligned_cols=68 Identities=19% Similarity=0.361 Sum_probs=49.3
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CE-EEEEEEEEeccCCccHHHHHHHHHHh
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GR-IKCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~-gr-v~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
+..+.+.+.+.+++|+|.+|+++|.++++++.+.+..+.. +. ....+.+........+..+.+.|.++
T Consensus 54 k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l 123 (136)
T PRK08577 54 KKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKL 123 (136)
T ss_pred ccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcC
Confidence 4578999999999999999999999999999988877654 33 33344444432224566777766653
No 59
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.062 Score=54.21 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=59.8
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE-EEeCCEEEEEEEEEeccCC----ccHHHHHHHHHHhhcCCCCC
Q 040546 142 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEM-VPVGGRIKCVLWVQGFKGN----EGMVMLKRALNLVIDRPVSP 215 (225)
Q Consensus 142 ~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~i-st~~grv~~~~~v~~~~g~----~~~~~Lk~aL~~vi~~~~~p 215 (225)
+...|.|.|+++|++|..|..++...|++|+.|.| +|-+|+++++|+|...+|. .-...+...|.+++.....+
T Consensus 683 ~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~s~~~~ 761 (867)
T COG2844 683 GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEALLSGKAQ 761 (867)
T ss_pred CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHHHhcCCCC
Confidence 45788999999999999999999999999999996 6667889999999977663 12445667777777765544
No 60
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.70 E-value=0.11 Score=35.01 Aligned_cols=60 Identities=17% Similarity=0.325 Sum_probs=41.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~-grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
.+.+.+++++|.|.+|++.|.+.++.+.+.+..+.+ +.....+.+... .....+.++|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~L~~ 62 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV---GDIEELVEELRS 62 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc---ccHHHHHHHHhC
Confidence 467889999999999999999999999988876653 333333333332 234455555543
No 61
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.67 E-value=0.073 Score=34.65 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=41.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CEEEEEEEEEeccCCccHHHHHHHHH
Q 040546 146 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQGFKGNEGMVMLKRALN 206 (225)
Q Consensus 146 I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~-grv~~~~~v~~~~g~~~~~~Lk~aL~ 206 (225)
+++.|.+++|.+.+|++.|.+.++++.+..+...+ +.....+.+... .......+.++|.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 61 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-DLEHLARIMRKLR 61 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-CHHHHHHHHHHHh
Confidence 35778999999999999999999999998887665 433333444432 2233445555554
No 62
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=95.50 E-value=0.12 Score=46.12 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=52.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEeccCCccHHHHHHHHHH-hhc
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNL-VID 210 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~--~grv~~~~~v~~~~g~~~~~~Lk~aL~~-vi~ 210 (225)
.|++.|+|++|+...|.+.|-+.|+.|+.++.+.. +|.++-.+.+.......+..+|+++|.. +-+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~ 70 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAE 70 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999987774 3666655555544324678899999888 443
No 63
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=95.38 E-value=0.15 Score=34.19 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=42.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~--~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
.+.+.+.+++|+|.+|+..|.+.++.+.+.+..+. ++.....+.+... + ..+..+..+|+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD-D-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC-H-HHHHHHHHHHhC
Confidence 35678889999999999999999999998887664 3444444555542 2 445555555543
No 64
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.31 E-value=0.093 Score=47.12 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=52.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--EeCCEEEEEEEEEec-cCCccHHHHHHHHHHhhcC
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV--PVGGRIKCVLWVQGF-KGNEGMVMLKRALNLVIDR 211 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~is--t~~grv~~~~~v~~~-~g~~~~~~Lk~aL~~vi~~ 211 (225)
.+.|++.|+|++|+...|.+.|-+.|++|+.++-. +..+..+-.+.+... .+..+..+|+++|..+-+.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~ 80 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEK 80 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999875 444555533333322 2346788999999887665
No 65
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.19 E-value=0.023 Score=54.16 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=48.0
Q ss_pred HHHhhhccHHHHHHHHHHHHhHHHHHhhCC---CC-CcCChhhhhHHHHHHHHHHHHHHHHH
Q 040546 56 ELAAKKHSEAERRRRLRINDQYDNLRKILP---NL-VKVDKASVLAKTIKTVRELQRTVREQ 113 (225)
Q Consensus 56 ~~~~~~h~~~Er~RR~~in~~~~~Lr~lvP---~~-~k~dK~sil~~ai~yi~~L~~~~~~l 113 (225)
.+++..+|..||-|=..||+.|.+|.-+.= .. ..--|..||..||.-|-.|+++|.+-
T Consensus 524 kERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 524 KERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 357789999999997789999999987653 11 23358999999999999999999874
No 66
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=95.14 E-value=0.062 Score=45.42 Aligned_cols=66 Identities=15% Similarity=0.298 Sum_probs=55.5
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhh
Q 040546 142 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVI 209 (225)
Q Consensus 142 ~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi 209 (225)
..+.|++.+++|||+...|.++|.++|+.+..++.+..+|.+.-++.+... ...+..|+.+|...-
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~--~~~~~~le~~L~~l~ 72 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS--WNAITLIESTLPLKG 72 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC--hhHHHHHHHHHHhhh
Confidence 357899999999999999999999999999999999999987777777543 236778888876665
No 67
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=95.13 E-value=0.16 Score=33.91 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=43.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeccCCccHHHHHHHHHHh
Q 040546 146 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 146 I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~--grv~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
+.+.+++++|++.+|++.|.+.++.+.+..+...+ +.....+.+.. . ....+.+.|+.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~---~-~~~~l~~~l~~~ 62 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS---P-VPEEVLEELKAL 62 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC---C-CCHHHHHHHHcC
Confidence 56788999999999999999999999999887754 55555555522 2 345666666553
No 68
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.09 E-value=0.18 Score=33.85 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=40.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 146 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 146 I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~--~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
+.+.+++++|.+.+|+..|.++++.+.+...... ++.....+.+... ....+.++|++
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~----~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP----IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC----CCHHHHHHHHc
Confidence 5678899999999999999999999988876653 3444333433332 34555555554
No 69
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.08 E-value=0.2 Score=30.69 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=30.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC
Q 040546 146 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG 180 (225)
Q Consensus 146 I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~ 180 (225)
|.+.|++.+|.+.+|+++|...++.+.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788999999999999999999999998876653
No 70
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.97 E-value=0.28 Score=34.35 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=42.9
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCC-EEEEEEEEEecc--CCccHHHHHHHHHHh
Q 040546 148 LSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG-RIKCVLWVQGFK--GNEGMVMLKRALNLV 208 (225)
Q Consensus 148 i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~g-rv~~~~~v~~~~--g~~~~~~Lk~aL~~v 208 (225)
+..+++||.|.+|++.+.++|+.+++.+..+..+ .-...|++.-.. +......+.+.|.+.
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRV 67 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 4457899999999999999999999998887765 334455555443 234455555666553
No 71
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=94.81 E-value=0.23 Score=44.48 Aligned_cols=69 Identities=10% Similarity=0.017 Sum_probs=50.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-eCCEEEEEEEEEeccCCccHHHHHHHHHHhhcC
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP-VGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 211 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist-~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~~ 211 (225)
.+.|++.|+|++|+..+|.+.|.++|++|...+..+ .++..|.....-......+...|+++|..+-..
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~~ 76 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAAR 76 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999888763 233344332222222346689999998887654
No 72
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=94.56 E-value=0.41 Score=34.07 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=36.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCC-EEEEEEEEEec
Q 040546 146 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG-RIKCVLWVQGF 192 (225)
Q Consensus 146 I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~g-rv~~~~~v~~~ 192 (225)
+.+.-++++|.|.+|++.+.++|+.+++....+..+ .....|.+...
T Consensus 4 l~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~ 51 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE 51 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE
Confidence 445567899999999999999999999998777643 34456666655
No 73
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.91 E-value=0.67 Score=31.62 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=40.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC-C-EEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-G-RIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~-g-rv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
.+.+.++++||.|.+|++.|.++|+++......... + .....+.+... .....+.+.|.+
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~---~~~~~~~~~L~~ 64 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ---EDRERAKEILKE 64 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH---HHHHHHHHHHHH
Confidence 467889999999999999999999999877655542 2 22223444422 134455555544
No 74
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.86 E-value=0.46 Score=32.99 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=40.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe--C-CEEEEEEEEEeccCCccHHHHHHHHHHh
Q 040546 146 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--G-GRIKCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 146 I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~--~-grv~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
+.+.-+++||.|.+|++.|.+.|+.|++...... + +.....+.+.....+ ....|.++|.+.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~-~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRS-KENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecch-HHHHHHHHHhCc
Confidence 4566789999999999999999999998876554 2 222233333332111 255666666543
No 75
>PRK07334 threonine dehydratase; Provisional
Probab=93.73 E-value=0.39 Score=44.78 Aligned_cols=66 Identities=8% Similarity=0.152 Sum_probs=49.0
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe-----CCEEEEEEEEEeccCCccHHHHHHHHHHh
Q 040546 142 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV-----GGRIKCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 142 ~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~-----~grv~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
-.+.|.|.+.+|+|+|.+|+.+|.+.+++|.+.++.+. ++...-.+.+... +...+..|.+.|+++
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-d~~~L~~vi~~Lr~~ 395 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-DAAHLQEVIAALRAA 395 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-CHHHHHHHHHHHHHc
Confidence 45999999999999999999999999999999998764 3444444444432 334456666666654
No 76
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=93.70 E-value=0.049 Score=52.57 Aligned_cols=38 Identities=39% Similarity=0.630 Sum_probs=33.7
Q ss_pred HHHHHHHHHhHHHHHhhCCC----CCcCChhhhhHHHHHHHH
Q 040546 67 RRRRLRINDQYDNLRKILPN----LVKVDKASVLAKTIKTVR 104 (225)
Q Consensus 67 r~RR~~in~~~~~Lr~lvP~----~~k~dK~sil~~ai~yi~ 104 (225)
+|-|+|+|.-+..|.+|+|. .+|.||.|||.-+|.|++
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 34479999999999999994 389999999999999986
No 77
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=93.59 E-value=0.13 Score=38.36 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=59.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhhcCC
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDRP 212 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~~~ 212 (225)
.+.|+|.-.+|+|+-..|..+|-++|+.+...+=+-.+|++.-.+.+.-.+...+...++..|....++-
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~l 72 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEVVDFAALRDELAAEGKKL 72 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChHhccHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999999999998888898887777777666778888888887776653
No 78
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.58 E-value=0.47 Score=31.62 Aligned_cols=56 Identities=9% Similarity=0.090 Sum_probs=37.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 146 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 146 I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~--grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
+.+.-+++||.|.++++.|.+.|+.|.+....... +.....+.+.. ...+.+.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~------~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED------IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC------HHHHHHHHHH
Confidence 45667899999999999999999999876654443 44443344433 4455555544
No 79
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=93.49 E-value=0.37 Score=31.64 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=36.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CEEEEEEEEEe
Q 040546 146 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQG 191 (225)
Q Consensus 146 I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~-grv~~~~~v~~ 191 (225)
+.+..+++||.|.++++.|.+.|+.|....+...+ +.....+.+..
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 35678999999999999999999999887766655 56665555554
No 80
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=93.16 E-value=0.44 Score=32.56 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=35.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEe
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQG 191 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~ 191 (225)
.+.|..+++||.|.+|+.+|.+.|+.|.+.-+...++. .++.+..
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 56778899999999999999999999998877665553 3444444
No 81
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=93.11 E-value=0.064 Score=43.76 Aligned_cols=53 Identities=26% Similarity=0.394 Sum_probs=45.6
Q ss_pred HhhhccHHHHHHHHHHHHhHHHHHhhCCCC--CcCChhhhhHHHHHHHHHHHHHH
Q 040546 58 AAKKHSEAERRRRLRINDQYDNLRKILPNL--VKVDKASVLAKTIKTVRELQRTV 110 (225)
Q Consensus 58 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~--~k~dK~sil~~ai~yi~~L~~~~ 110 (225)
.+.-|+..||+|=..+|+.|..||.++|.. .|.+|.--|.-|-.||-.|=+-.
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence 568899999999999999999999999944 67777778999999998876543
No 82
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.37 E-value=1.6 Score=29.74 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=42.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEeccCCccHHHHHHHHHHh
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~--~grv~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
..+.+..++++|.|.+|++.|.+.++.+.+...... ++...-.+.+... + ...+.++|...
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~-~---~~~~~~~L~~~ 64 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM-N---PRPIIEDLRRA 64 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC-C---HHHHHHHHHHC
Confidence 367788999999999999999999999987654332 3444445555442 1 24666666553
No 83
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=92.31 E-value=0.12 Score=51.06 Aligned_cols=47 Identities=36% Similarity=0.522 Sum_probs=40.0
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHhhCC----CCCcCChhhhhHHHHHHHHH
Q 040546 59 AKKHSEAERRRRLRINDQYDNLRKILP----NLVKVDKASVLAKTIKTVRE 105 (225)
Q Consensus 59 ~~~h~~~Er~RR~~in~~~~~Lr~lvP----~~~k~dK~sil~~ai~yi~~ 105 (225)
++.-.-+-|-||.|=|+-|.+|..+|| ..+..|||||+.-||.|++-
T Consensus 47 kEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 47 KEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 444456789999999999999999999 23778999999999999873
No 84
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.29 E-value=1.3 Score=32.94 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=43.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEE-EEEEEEEeccCCccHHHHHHHHHH
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRI-KCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv-~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
.-+-+..++++|.|.+++..+...|+.+++.++-+..+.. -+.|.+.-... . ...++++|..
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~-~-~~~~~~~l~~ 77 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK-S-APALDPIIKS 77 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-C-CHHHHHHHHH
Confidence 4555666889999999999999999999999988776443 35566665432 1 2444444443
No 85
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=92.04 E-value=0.95 Score=31.94 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=41.4
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEE-EEEEEEEeccCCccHHHHHHHHHHh
Q 040546 148 LSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRI-KCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 148 i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv-~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
+..++++|.|.+++..+...|+.+++.++-+..+.. -+.|.+.-... ...++++|..+
T Consensus 5 f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~---~~~~~~~l~~L 63 (74)
T cd04904 5 FSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVD---RGDLDQLISSL 63 (74)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcC---hHHHHHHHHHH
Confidence 344779999999999999999999999998877643 35566665432 23355555443
No 86
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=92.03 E-value=0.2 Score=34.09 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=38.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 146 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 146 I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
+-+.+.+++|++.+|+..|.+.|+.+...+..+.++.....+.+... ....+-+.|++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~----~l~~li~~l~~ 59 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE----VSEELLEALRA 59 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC----CCHHHHHHHHc
Confidence 34578899999999999999999998766555444444433333332 34555555554
No 87
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=91.78 E-value=1.1 Score=36.04 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=55.4
Q ss_pred CCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEE-EEEeCCEEEEEEEEEeccCCccHHHHHHHHHHh
Q 040546 140 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAE-MVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 140 ~e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~-ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
.+..+.+.+.-++|.|.|+++++++...++.|...+ ..+++|+.-.++.+....-..+++.+-.+|+.+
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~ 138 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLRKV 138 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHhcc
Confidence 345688889999999999999999999999988765 578889988888887663345677777777653
No 88
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=91.75 E-value=1 Score=36.96 Aligned_cols=65 Identities=14% Similarity=0.237 Sum_probs=50.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeccCCccHHHHHHHHHHhhcC
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 211 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~--grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~~ 211 (225)
.+.+.-+++||.|.+|...+...|+.+.+..+...+ |...-++.+.+ ....+..|.+.|.+.++-
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--d~~~i~qi~kQl~Kli~V 69 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--DDKVLEQITKQLNKLVDV 69 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--CHHHHHHHHHHHhcCccE
Confidence 467788999999999999999999999988887775 44444555554 345678888888887763
No 89
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=91.57 E-value=1.1 Score=39.92 Aligned_cols=68 Identities=22% Similarity=0.295 Sum_probs=50.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~--~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
...+.++|++++|+...|...|.+.|+.|+.++-.+- .|++|--..+....+..+...+.+++..+-+
T Consensus 7 ~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~ 76 (287)
T COG0788 7 TFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAE 76 (287)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHH
Confidence 4778999999999999999999999999998875531 2444433333333334678889999888555
No 90
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.32 E-value=1.4 Score=30.42 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=38.7
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 147 TLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 147 ~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~-grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
.+.-+++||-|.+++++|.+ |.+|+..+....+ +.....+.++.. +.....++.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~-~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP-DREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC-CHHHHHHHHHHHHH
Confidence 45668999999999999999 9888877765543 222222233332 33456677777765
No 91
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=90.97 E-value=1.4 Score=36.38 Aligned_cols=65 Identities=15% Similarity=0.278 Sum_probs=48.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeccCCccHHHHHHHHHHhhcC
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 211 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~--grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~~ 211 (225)
.+.+.-+++||.|.+|...+...|..+.+..+.... |...-++.+.+ ....+..+.+.|.+.++-
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--~~~~i~qi~kQl~KLidV 70 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--DEQVIEQITKQLNKLIDV 70 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--CHHHHHHHHHHHhccccE
Confidence 467788999999999999999999999988877665 44444455543 234567777778777663
No 92
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=90.72 E-value=0.48 Score=41.74 Aligned_cols=55 Identities=24% Similarity=0.273 Sum_probs=46.3
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHhhCCCC---CcCChhhhhHHHHHHHHHHHHHHH
Q 040546 57 LAAKKHSEAERRRRLRINDQYDNLRKILPNL---VKVDKASVLAKTIKTVRELQRTVR 111 (225)
Q Consensus 57 ~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~---~k~dK~sil~~ai~yi~~L~~~~~ 111 (225)
.++..-+..||+|-..+|..|..||..+|.. .|..|---|..|-.||--|-....
T Consensus 173 ~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 173 HRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 3556788999999999999999999999955 566777789999999988876554
No 93
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=90.64 E-value=1.1 Score=45.18 Aligned_cols=64 Identities=8% Similarity=0.219 Sum_probs=47.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEE-EEEEEEEeccCCccHHHHHHHHHH
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRI-KCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv-~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
.+.|.|.+.+++|+|.+|+.+|.+.++.|.++++.+.++.. ...|.+... +...+..|-.+|++
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-DRVHLANIMRKIRV 690 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-CHHHHHHHHHHHhC
Confidence 57889999999999999999999999999999987776443 334444443 32345555555554
No 94
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=90.62 E-value=0.26 Score=46.32 Aligned_cols=42 Identities=33% Similarity=0.434 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhHHHHHhhCCC----CCcCChhhhhHHHHHHHHHH
Q 040546 65 AERRRRLRINDQYDNLRKILPN----LVKVDKASVLAKTIKTVREL 106 (225)
Q Consensus 65 ~Er~RR~~in~~~~~Lr~lvP~----~~k~dK~sil~~ai~yi~~L 106 (225)
+-|.||++-|--|.+|..++|- .+..||++|+.-|-.|||--
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 4688999999999999999992 36799999999999999853
No 95
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=90.49 E-value=1.6 Score=31.60 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=44.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCC--EEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG--RIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~g--rv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
.+.+--+++||+|.+|..++.--|..+.+-++....+ ...-++.+.+ ....+..|.+.|.+.++
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~--~~~~i~qi~kQL~KLid 69 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC--TENEATLLVSQLKKLIN 69 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC--CHHHHHHHHHHHhCCcC
Confidence 4677788999999999999999998888887775553 3333333332 23456667777766554
No 96
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=89.83 E-value=1.4 Score=44.55 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=47.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeccCCccHHHHHHHHHHh
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~--grv~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
.+.|.|.+.+|+|+|.+|+.+|.+.++.|.++++.+.. +.+.-.|.+... +...+..|-.+|+++
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-~~~~L~~l~~~L~~i 732 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-NLQVLGRVLGKLNQV 732 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-CHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999999987653 544444455443 333455666666543
No 97
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=89.78 E-value=2.6 Score=42.38 Aligned_cols=67 Identities=13% Similarity=0.032 Sum_probs=56.6
Q ss_pred EEEE-EcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccC-CccHHHHHHHHHHhhcCC
Q 040546 145 KVTL-SCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKG-NEGMVMLKRALNLVIDRP 212 (225)
Q Consensus 145 ~I~i-~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g-~~~~~~Lk~aL~~vi~~~ 212 (225)
.++| .|++++|++.++..+|--.++.|.+|++.+ +|.....|.|....| ..+...+.+++++.+...
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 616 (693)
T PRK00227 548 FFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSE 616 (693)
T ss_pred eEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCC
Confidence 3444 459999999999999999999999999999 888888888887555 477899999999988753
No 98
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=89.65 E-value=1.5 Score=30.21 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=41.8
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEE--eCCEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 152 DQPELMSDLSRALRSVKGRLVRAEMVP--VGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 152 ~r~glL~~Il~aL~~l~L~Vv~A~ist--~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
++||.|.+|+..+.--|..+.+-++.. .++...-++.+.+. ...+..|.+.|.+.++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~--~~~i~~l~~Ql~Klid 59 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD--DREIEQLVKQLEKLID 59 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---CCHHHHHHHHHHCSTT
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC--chhHHHHHHHHhccCC
Confidence 479999999999999999998888877 55555555555442 4567778888877665
No 99
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=89.43 E-value=1.5 Score=43.92 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=47.3
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 142 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 142 ~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~-grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
..+.|.|.+.+++|+|.+|+.+|.+.++.|.+.++.+.+ +.+.-.|.+... +...+..|-.+|++
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-~~~~L~~ii~~L~~ 674 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-NYKHLLKIMLKIKT 674 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-CHHHHHHHHHHHhC
Confidence 357889999999999999999999999999999998775 443333444432 33445555555554
No 100
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=89.12 E-value=3.2 Score=29.91 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=46.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~--grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
.+.+.-+++||.|.+|+..++--|..|.+-++.... +...-++.+. +...+..|.+.|.+.++
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~---~~~~i~ql~kQL~KL~d 69 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA---SERPIDLLSSQLNKLVD 69 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC---CCchHHHHHHHHhcCcC
Confidence 466777899999999999999999998888877743 4444344442 45667788887777665
No 101
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=89.08 E-value=1.5 Score=29.81 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=39.9
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--eCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 147 TLSCEDQPELMSDLSRALRSVKGRLVRAEMVP--VGGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 147 ~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist--~~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
-+..++++|.+.+|.+.|.+.|+.+.+..... .++.....+.+.+. ...++.++|++
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~----~~~~~~~~l~~ 61 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP----VPDEVLEELRA 61 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC----CCHHHHHHHHc
Confidence 45788999999999999999999998776544 34566555555542 12355555544
No 102
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.83 E-value=2.9 Score=29.80 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=40.6
Q ss_pred EcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCE-EEEEEEEEeccCCccHHHHHHHHHHh
Q 040546 149 SCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 149 ~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~gr-v~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
.-++++|.|.+++..+...|+.+++.++-+..+. --+.|.+.-.... ..++++|..+
T Consensus 6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~---~~i~~~l~~l 63 (74)
T cd04929 6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQ---RRLDELVQLL 63 (74)
T ss_pred EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCH---HHHHHHHHHH
Confidence 3468899999999999999999999998776543 3456666654222 2555555443
No 103
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=88.18 E-value=0.79 Score=46.01 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=52.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
..++|...+|+|+|..|+.+|. ++..|.++|.|..+...|.+. ++..-..+.+++..++.
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~---~~~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK---PGFDRATVERDVTRVLA 691 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec---CcccHHHHHHHHHHHHh
Confidence 6789999999999999999999 888999999999999999888 33456778888877764
No 104
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=86.81 E-value=3.1 Score=30.71 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=45.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEe-ccCCccHHHHHHHHHHhhc
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQG-FKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~-~~g~~~~~~Lk~aL~~vi~ 210 (225)
.+.+--+++||+|.+|..++.-.|..+.+..++...+.-++-+.+.. ..+...+..+.+.|.+.++
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~Klid 70 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQIN 70 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCcc
Confidence 46777889999999999999999888888777666543332222222 2234556777777777665
No 105
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=86.67 E-value=3.5 Score=34.41 Aligned_cols=65 Identities=12% Similarity=0.223 Sum_probs=48.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--eCCEEEEEEEEEeccCCccHHHHHHHHHHhhcC
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP--VGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 211 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist--~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~~ 211 (225)
.+.+.-+++||+|.+|...|...|.++.+.++.+ ..|....++.+.+ +...+..|.+.|...++.
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--~~~~ieqL~kQL~KLidV 70 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--DDRTIEQLTKQLYKLVNI 70 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--CHHHHHHHHHHHHHHhHh
Confidence 4677888999999999999999999999888866 3344444444433 222378888888888764
No 106
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=85.53 E-value=0.54 Score=41.52 Aligned_cols=55 Identities=27% Similarity=0.360 Sum_probs=45.4
Q ss_pred hHHHhhhccHHHHHHHHHHHHhHHHHHhhCCCC---CcCChhhhhHHHHHHHHHHHHH
Q 040546 55 KELAAKKHSEAERRRRLRINDQYDNLRKILPNL---VKVDKASVLAKTIKTVRELQRT 109 (225)
Q Consensus 55 ~~~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~---~k~dK~sil~~ai~yi~~L~~~ 109 (225)
+...+..=|..||.|.-.+|+.|..||.++|.. .|..|.=.|.-|-.||-.|..-
T Consensus 69 ~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 69 LTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 334567778999999999999999999999943 6777888898888898887653
No 107
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=84.98 E-value=7.1 Score=29.54 Aligned_cols=66 Identities=12% Similarity=0.183 Sum_probs=46.3
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCE--EEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 142 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR--IKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 142 ~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~gr--v~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
+...|.+--+++||+|..|...+.--|..|-+..+...+.. ..-++.+. +...+..+.+.|.+.++
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~---~~~~i~Qi~kQL~KLid 74 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN---DDQRLEQMISQIEKLED 74 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc---CchHHHHHHHHHhCCcC
Confidence 44678888899999999999999888877777766655533 33233332 23466777777777665
No 108
>PRK11899 prephenate dehydratase; Provisional
Probab=84.77 E-value=6.8 Score=35.02 Aligned_cols=65 Identities=11% Similarity=0.063 Sum_probs=47.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCE-EEEEEEEEeccCCccHHHHHHHHHHhh
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCVLWVQGFKGNEGMVMLKRALNLVI 209 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~gr-v~~~~~v~~~~g~~~~~~Lk~aL~~vi 209 (225)
..+-+..+++||.|.+++.++...|+..++-++-+..+. --+.|++.-.+ ...-..+++||..+-
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg-~~~d~~v~~aL~~l~ 260 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEG-HPEDRNVALALEELR 260 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEEC-CCCCHHHHHHHHHHH
Confidence 334445578999999999999999999999999888655 45667776553 333345666666553
No 109
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=84.38 E-value=7.3 Score=32.89 Aligned_cols=67 Identities=9% Similarity=0.089 Sum_probs=47.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCC----E-EEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG----R-IKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~g----r-v~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
+.+++.-.|+||+..+|.++|.+.|++|.+-+..+.+. . .+.+...-..-....+..|+.+|..+-.
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~~ 167 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALCT 167 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 78899999999999999999999999999888776653 1 2222221122123447778887766543
No 110
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=83.62 E-value=4.6 Score=40.63 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=49.2
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
...+.|.|.-.+|+|+|.+|+++|.+.+..|.+.++.+.++++..+.+.=..++...+..|-.+|++
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n~~~L~~i~~~l~~ 691 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKNLNHLGRVLARLKQ 691 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECcHHHHHHHHHHHhc
Confidence 3568888999999999999999999999999999998876665544433333343445555555544
No 111
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.16 E-value=11 Score=27.03 Aligned_cols=61 Identities=10% Similarity=0.113 Sum_probs=38.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~-grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
.+.+.-+++||-|.+++++|- +..|........+ +.....+.++..++......+.++|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 567778899999999999999 5555554443332 333333445543213446667777665
No 112
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.90 E-value=7 Score=30.29 Aligned_cols=48 Identities=10% Similarity=0.107 Sum_probs=36.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEE-EEEEEEEec
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRI-KCVLWVQGF 192 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv-~~~~~v~~~ 192 (225)
-+-+..++++|.|.+|+..+...|+.+++.++-+..+.. -+.|.+...
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdie 91 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCE 91 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEE
Confidence 344445789999999999999999999999988875433 345556554
No 113
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=79.63 E-value=9.6 Score=24.43 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=30.1
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEec
Q 040546 145 KVTLSCE---DQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGF 192 (225)
Q Consensus 145 ~I~i~C~---~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~ 192 (225)
.|++.+. ..+|.+.+++++|.+.++.+.....+. .+ .-..|++...
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~-~~-~~i~~~v~~~ 50 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS-SE-VNISFVVDED 50 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC-Cc-eeEEEEEeHH
Confidence 3555443 568899999999999999987665433 22 2223555543
No 114
>PRK06382 threonine dehydratase; Provisional
Probab=77.82 E-value=15 Score=34.28 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=45.8
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE----Ee-CCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV----PV-GGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~is----t~-~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
+..+.+.|.-+++||.|.+|++.|.+.+++|++.... .. .+.....+.++.. +......|.++|..
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-~~~~~~~v~~~L~~ 398 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-GQDHLDRILNALRE 398 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-CHHHHHHHHHHHHH
Confidence 4568889999999999999999999999999887764 22 2344445555553 22223466666654
No 115
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=76.49 E-value=20 Score=32.92 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=46.2
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe-----CCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV-----GGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~-----~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
+..+.+.|.-+++||.|.++++.+.+.+.+|++...... .+.....+.++.. +......|.++|..
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-GKEHLDEILKILRD 373 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-CHHHHHHHHHHHHH
Confidence 456788999999999999999999999999887765421 2444444555543 23344566666654
No 116
>PRK08198 threonine dehydratase; Provisional
Probab=75.49 E-value=22 Score=32.97 Aligned_cols=66 Identities=17% Similarity=0.251 Sum_probs=46.7
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe-----CCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV-----GGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~-----~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
+..+.+.|.-+++||.|.++++.|.+.|..|+..+.... .+.....+.++. ++......|.++|.+
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~-~~~~~~~~l~~~L~~ 395 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLET-RGPEHIEEILDALRD 395 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEe-CCHHHHHHHHHHHHH
Confidence 456788999999999999999999999998887776532 244444444454 232345666666654
No 117
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=75.34 E-value=3.2 Score=34.64 Aligned_cols=64 Identities=22% Similarity=0.360 Sum_probs=53.5
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 142 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 142 ~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
..+.|+.-..++||+...|.++.-+.|..++.+.++.+|+.+.-+..+.+..+. +..|+.+|..
T Consensus 4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~da--v~~le~~l~~ 67 (176)
T COG2716 4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSWDA--VTLLEATLPL 67 (176)
T ss_pred cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeCHHH--HHHHHHHhhc
Confidence 347788889999999999999999999999999999999988877788776554 5566666644
No 118
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=74.64 E-value=18 Score=23.82 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=24.9
Q ss_pred EEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEEEE
Q 040546 145 KVTLSC---EDQPELMSDLSRALRSVKGRLVRAEMVP 178 (225)
Q Consensus 145 ~I~i~C---~~r~glL~~Il~aL~~l~L~Vv~A~ist 178 (225)
.|.+.+ .+.+|++.+|+++|.+.|+.+.-...++
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 345555 3568999999999999999986554333
No 119
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=72.32 E-value=19 Score=33.73 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=44.5
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEE-EEEEEEEeccCCccHHHHHHHHHHh
Q 040546 148 LSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRI-KCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 148 i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv-~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
+.-+++||.|.+++..+...|+..++-++-+..+.. -+.|++.-.+ ......+++||..+
T Consensus 302 ~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg-~~~d~~~~~aL~~l 362 (386)
T PRK10622 302 MATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQA-NLRSAEMQKALKEL 362 (386)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeC-CCCCHHHHHHHHHH
Confidence 334689999999999999999999999998877664 4666676653 33334566666554
No 120
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=71.79 E-value=23 Score=31.86 Aligned_cols=65 Identities=14% Similarity=0.187 Sum_probs=46.7
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEE-EEEEEEEeccCCccHHHHHHHHHHhh
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRI-KCVLWVQGFKGNEGMVMLKRALNLVI 209 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv-~~~~~v~~~~g~~~~~~Lk~aL~~vi 209 (225)
..+-+.-+++||.|.++|..|...|++.++.++-...++. .+.|++.-. |......+++||..+-
T Consensus 195 Tsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~e-g~~~~~~v~~AL~el~ 260 (279)
T COG0077 195 TSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIE-GHIDDPLVKEALEELK 260 (279)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEe-cCcCcHhHHHHHHHHH
Confidence 3343445599999999999999999999999998887654 455666654 3333366677766553
No 121
>PRK11898 prephenate dehydratase; Provisional
Probab=69.96 E-value=24 Score=31.47 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=41.7
Q ss_pred EEEEEcCC-CCChHHHHHHHHHhCCCeEEEEEEEEeCCEE-EEEEEEEeccCCccHHHHHHHHHH
Q 040546 145 KVTLSCED-QPELMSDLSRALRSVKGRLVRAEMVPVGGRI-KCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 145 ~I~i~C~~-r~glL~~Il~aL~~l~L~Vv~A~ist~~grv-~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
-+-+..++ ++|.|.+++..+...|+.+++.++-...++. -+.|++.-. +...-..++++|..
T Consensus 198 slif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~e-g~~~~~~~~~al~~ 261 (283)
T PRK11898 198 SLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVE-GHIDDVLVAEALKE 261 (283)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEE-ccCCCHHHHHHHHH
Confidence 34445544 5999999999999999999999998876543 355566554 22222345555544
No 122
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.88 E-value=1.6 Score=31.58 Aligned_cols=41 Identities=29% Similarity=0.353 Sum_probs=32.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--eCCEEEEE
Q 040546 146 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP--VGGRIKCV 186 (225)
Q Consensus 146 I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist--~~grv~~~ 186 (225)
|+++-.-||-++.|+.-||..|++-|.+|+|.. .+++.-.+
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEv 45 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEV 45 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEE
Confidence 566667799999999999999999999999953 33444333
No 123
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=69.62 E-value=40 Score=24.77 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=50.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEeccCCccHHHHHHHHHHhhcC
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 211 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~--~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~~ 211 (225)
..+.+....+|+.|.+|+.+.+--|..|...++++. +|..---++|.+. -+...|...|.++.+-
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~---R~~~lL~~QLeKl~Dv 70 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD---RSVDLLTSQLEKLYDV 70 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC---CChHHHHHHHHHHccc
Confidence 456778889999999999999999999999998888 5655555566654 3456777777766553
No 124
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=65.91 E-value=29 Score=22.78 Aligned_cols=24 Identities=4% Similarity=-0.053 Sum_probs=20.6
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEE
Q 040546 152 DQPELMSDLSRALRSVKGRLVRAE 175 (225)
Q Consensus 152 ~r~glL~~Il~aL~~l~L~Vv~A~ 175 (225)
..+|...+|+++|.+.++.+....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~ 35 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIP 35 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEe
Confidence 567899999999999999887663
No 125
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=64.57 E-value=40 Score=22.54 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=22.7
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEE
Q 040546 145 KVTLSCE---DQPELMSDLSRALRSVKGRLV 172 (225)
Q Consensus 145 ~I~i~C~---~r~glL~~Il~aL~~l~L~Vv 172 (225)
.|.+.+. ..+|++.+++.+|.+.++.+.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 3445453 578999999999999999996
No 126
>PRK08526 threonine dehydratase; Provisional
Probab=62.99 E-value=54 Score=30.73 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=47.4
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCE-----EEEEEEEEeccCCccHHHHHHHHHH
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-----IKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~gr-----v~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
+..+.+.+.-+++||-|.++++.+-+.+.+|+..+....... +.-.+.++. ++......|.++|++
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET-KGKEHQEEIRKILTE 394 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe-CCHHHHHHHHHHHHH
Confidence 457889999999999999999999999999998887554433 332333333 243456667776654
No 127
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.96 E-value=41 Score=22.14 Aligned_cols=27 Identities=4% Similarity=-0.054 Sum_probs=21.8
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEE
Q 040546 152 DQPELMSDLSRALRSVKGRLVRAEMVP 178 (225)
Q Consensus 152 ~r~glL~~Il~aL~~l~L~Vv~A~ist 178 (225)
.++|.+.+++++|.+.|+++.-...++
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 568999999999999999986554433
No 128
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.21 E-value=49 Score=21.55 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=23.7
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEE
Q 040546 145 KVTLSCE---DQPELMSDLSRALRSVKGRLVRAEM 176 (225)
Q Consensus 145 ~I~i~C~---~r~glL~~Il~aL~~l~L~Vv~A~i 176 (225)
+|.+.+. ..+|++.+++.+|.+.++.+.-...
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 3444443 5689999999999999988864443
No 129
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=56.60 E-value=17 Score=35.12 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=33.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG 180 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~ 180 (225)
.++|.|.+|-|+-.+|++.|-..++++...+|...+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 578999999999999999999999999999996653
No 130
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=56.42 E-value=81 Score=34.88 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=49.3
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEE---EEEeCC--EEEEEEEEEeccCC-ccHHH----HHHHHHHhhc
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAE---MVPVGG--RIKCVLWVQGFKGN-EGMVM----LKRALNLVID 210 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~---ist~~g--rv~~~~~v~~~~g~-~~~~~----Lk~aL~~vi~ 210 (225)
++.+.++|.....+..|++|+-+|+++|+.|+... +.+-++ ..++.|.+....+. ..... +.+++..+..
T Consensus 487 ~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v~~ 566 (1528)
T PF05088_consen 487 PGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAVWN 566 (1528)
T ss_pred CCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHHhc
Confidence 45688999888889999999999999999999765 343222 34566777765543 33444 4455555544
Q ss_pred CC
Q 040546 211 RP 212 (225)
Q Consensus 211 ~~ 212 (225)
+.
T Consensus 567 g~ 568 (1528)
T PF05088_consen 567 GR 568 (1528)
T ss_pred CC
Confidence 43
No 131
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=54.09 E-value=67 Score=22.00 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=35.7
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhhcC
Q 040546 151 EDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 211 (225)
Q Consensus 151 ~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~~ 211 (225)
.+.+|.+.+++++|.+.++.+.-.+.++-+. -..|.+...........+++++-.-|++
T Consensus 12 ~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~--~isf~v~~~d~~~~~~~l~~~~~~~~~~ 70 (80)
T cd04921 12 VGVPGIAARIFSALARAGINVILISQASSEH--SISFVVDESDADKALEALEEEFALEIKA 70 (80)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEEecCCcc--eEEEEEeHHHHHHHHHHHHHHHHhhhhh
Confidence 3567899999999999999986554432222 2234555432222345566666555553
No 132
>PRK14639 hypothetical protein; Provisional
Probab=51.73 E-value=1.1e+02 Score=24.53 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=38.3
Q ss_pred HHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC--ccHHHHHHHHHHhhcC
Q 040546 160 LSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDR 211 (225)
Q Consensus 160 Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~--~~~~~Lk~aL~~vi~~ 211 (225)
+-.+++++|++++..++..-++..+--+.+...+|. .+...+-++|..+++.
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~ 56 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDV 56 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 446788999999999999887755445555554442 4577888899988885
No 133
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=51.55 E-value=69 Score=26.98 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=30.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCC
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG 181 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~g 181 (225)
-++|..+.++|.|.+|...+.++|..++.++--.-++
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~ 40 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKD 40 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhcc
Confidence 4677889999999999999999999999888543333
No 134
>PRK12483 threonine dehydratase; Reviewed
Probab=51.10 E-value=1.1e+02 Score=29.88 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=41.4
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEE-EEEeccCCccH-HHHHHHHHH
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVL-WVQGFKGNEGM-VMLKRALNL 207 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~-~v~~~~g~~~~-~~Lk~aL~~ 207 (225)
+..+.+.|.-+++||-|.++++.|.+. +|+..+....+.+...++ .++. ++.... .+|.++|.+
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~-~~~~~~~~~i~~~l~~ 408 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQT-HPRHDPRAQLLASLRA 408 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEe-CChhhhHHHHHHHHHH
Confidence 457888999999999999999999888 666666554443333233 3332 233333 566666654
No 135
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=49.30 E-value=1.2e+02 Score=28.35 Aligned_cols=66 Identities=8% Similarity=0.035 Sum_probs=41.8
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-eC-CEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP-VG-GRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist-~~-grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
+..+.+++.-+++||-|.++++.+-+.+.+|+....-. .+ +.....+.++.. +.....++.++|.+
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~-~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELN-DKEDFAGLLERMAA 390 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeC-CHHHHHHHHHHHHH
Confidence 45788999999999999999997766766777666542 22 222222333332 32345566666654
No 136
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=48.78 E-value=92 Score=29.80 Aligned_cols=64 Identities=9% Similarity=0.107 Sum_probs=41.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEE-EEEEEEEeccC-CccHHHHHHHHHH
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRI-KCVLWVQGFKG-NEGMVMLKRALNL 207 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv-~~~~~v~~~~g-~~~~~~Lk~aL~~ 207 (225)
.-+-+.-.+++|-|.+++..+...|+.+++.++-...+.. -+.|.|.-... ...+..+-+.|++
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~ 82 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQ 82 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHH
Confidence 3344455778999999999999999999999987765432 34555655422 1233344444444
No 137
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=48.36 E-value=1.2e+02 Score=29.36 Aligned_cols=64 Identities=11% Similarity=0.040 Sum_probs=40.4
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEE-EEEeccCCccHHHHHHHHHH
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVL-WVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~-~v~~~~g~~~~~~Lk~aL~~ 207 (225)
+..+.+.|.-+++||-|.+++++|... +|+..+..-.+...-.++ .++. .+......|.++|..
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie~-~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQL-SNPQERQEILARLND 387 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEEe-CCHHHHHHHHHHHHH
Confidence 457889999999999999999999873 555544443332222232 3333 233455666666654
No 138
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.06 E-value=95 Score=21.79 Aligned_cols=56 Identities=11% Similarity=0.022 Sum_probs=33.0
Q ss_pred cCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 150 CEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 150 C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
.+..+|.+.+|+++|.+.|+.|-.... +. .--.|.+..... .....++++|.+-++
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~---s~-~~iSftv~~~d~-~~~~~~~~~l~~~l~ 66 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITT---SE-ISVALTLDNTGS-TSDQLLTQALLKELS 66 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEee---cC-CEEEEEEecccc-chhHHHHHHHHHHHH
Confidence 356789999999999999988765532 22 223455554321 111334445544444
No 139
>PLN02317 arogenate dehydratase
Probab=48.02 E-value=1.4e+02 Score=28.02 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=29.9
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCE
Q 040546 148 LSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR 182 (225)
Q Consensus 148 i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~gr 182 (225)
+.-++++|.|.++|.++...++.+++.++-...+.
T Consensus 288 fsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~ 322 (382)
T PLN02317 288 FSLEEGPGVLFKALAVFALRDINLTKIESRPQRKR 322 (382)
T ss_pred EEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCC
Confidence 33367899999999999999999999998776554
No 140
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.20 E-value=77 Score=20.52 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=20.3
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEE
Q 040546 152 DQPELMSDLSRALRSVKGRLVRAEM 176 (225)
Q Consensus 152 ~r~glL~~Il~aL~~l~L~Vv~A~i 176 (225)
+.+|++.+++++|.+.++.+--...
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q 37 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQ 37 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEe
Confidence 5678999999999999988854443
No 141
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=46.90 E-value=67 Score=26.93 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=43.3
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEE---eccCCccHHHHHHHHHHh
Q 040546 142 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQ---GFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 142 ~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~--grv~~~~~v~---~~~g~~~~~~Lk~aL~~v 208 (225)
..+.+.+...||||++-++.+.|..+|+.+-+-+..+.- +.--..|..+ ..--+..+..|+.++...
T Consensus 91 ~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al 162 (176)
T COG2716 91 APVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEAL 162 (176)
T ss_pred ceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHH
Confidence 358889999999999999999999999887654433322 2222222222 111134577777776654
No 142
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=46.70 E-value=74 Score=30.68 Aligned_cols=64 Identities=11% Similarity=-0.033 Sum_probs=42.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEE--EEEEEEeccCCccHHHHHHHHHH
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIK--CVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~--~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
+-|-+.-.+++|.|.+++..+...|+.+++.++-...+... ..|.|........+..+-+.|+.
T Consensus 32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~ 97 (464)
T TIGR01270 32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKS 97 (464)
T ss_pred EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHH
Confidence 33444557789999999999999999999999877765433 35666654222233333344444
No 143
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=46.44 E-value=1.2e+02 Score=24.03 Aligned_cols=38 Identities=11% Similarity=0.244 Sum_probs=32.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCE
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR 182 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~gr 182 (225)
.|++.-+.+||-|..++.+|.+.|+.+---+|.-.+++
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dF 42 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDF 42 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCc
Confidence 57888999999999999999999999887777666543
No 144
>PRK09224 threonine dehydratase; Reviewed
Probab=45.76 E-value=1.6e+02 Score=28.41 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=39.2
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEE-EEEEeccCCccHHHHHHHHHH
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCV-LWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~-~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
+..+.+.|.-++|||-|.++++.|. +.+|+..+....+...-.+ +.++..+.......|.++|.+
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~~~~~~i~~~L~~ 391 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQEERAEIIAQLRA 391 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChhhHHHHHHHHHHH
Confidence 4578899999999999999999998 4555554444333222222 233332212225667666654
No 145
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.45 E-value=79 Score=20.14 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.4
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEE
Q 040546 152 DQPELMSDLSRALRSVKGRLVRAE 175 (225)
Q Consensus 152 ~r~glL~~Il~aL~~l~L~Vv~A~ 175 (225)
+.+|.+.+++++|.+.++.+...+
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEE
Confidence 457999999999999998887555
No 146
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=44.28 E-value=1e+02 Score=21.21 Aligned_cols=31 Identities=0% Similarity=-0.069 Sum_probs=23.9
Q ss_pred EEEEEc---CCCCChHHHHHHHHHhCCCeEEEEE
Q 040546 145 KVTLSC---EDQPELMSDLSRALRSVKGRLVRAE 175 (225)
Q Consensus 145 ~I~i~C---~~r~glL~~Il~aL~~l~L~Vv~A~ 175 (225)
+|++.+ ...+|.+.+|+++|.+.|+.+....
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence 455533 4568999999999999999986553
No 147
>PRK14647 hypothetical protein; Provisional
Probab=44.25 E-value=1.7e+02 Score=23.72 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=37.1
Q ss_pred HHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC--ccHHHHHHHHHHhhcC
Q 040546 160 LSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDR 211 (225)
Q Consensus 160 Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~--~~~~~Lk~aL~~vi~~ 211 (225)
+-.+++++|++++..++..-++..+--+.+.+.+|. .+...+-++|..+++.
T Consensus 14 i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~gvslddC~~vSr~is~~LD~ 67 (159)
T PRK14647 14 AEQVLSSLGLELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDV 67 (159)
T ss_pred HHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHcc
Confidence 345678999999999999877644334444544442 4578888999999984
No 148
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=43.10 E-value=2.2e+02 Score=24.74 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=32.1
Q ss_pred CeEEEEEEcCCCCC--hHHHHHHHHHhCCCeEEEEEEEEeC
Q 040546 142 GMLKVTLSCEDQPE--LMSDLSRALRSVKGRLVRAEMVPVG 180 (225)
Q Consensus 142 ~~v~I~i~C~~r~g--lL~~Il~aL~~l~L~Vv~A~ist~~ 180 (225)
....+.+.|.+.++ +...+++.|++.++.+.+.++...+
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~ 181 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQ 181 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecC
Confidence 34678889987665 5888899999999999999987764
No 149
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=43.07 E-value=8.3 Score=38.75 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=45.4
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHhhCCC-----CCcCChhhhhHHHHHHHHHHHHHHHHHHh
Q 040546 57 LAAKKHSEAERRRRLRINDQYDNLRKILPN-----LVKVDKASVLAKTIKTVRELQRTVREQKA 115 (225)
Q Consensus 57 ~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~-----~~k~dK~sil~~ai~yi~~L~~~~~~l~~ 115 (225)
.....|..++||||-.+-++|..|-.|.|. ..+..++|||. +.|+.+++.-..+.+
T Consensus 786 ~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e 846 (856)
T KOG3582|consen 786 MVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTE 846 (856)
T ss_pred eeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHh
Confidence 345689999999999999999999999993 25678999999 777777776665543
No 150
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.04 E-value=1.2e+02 Score=21.23 Aligned_cols=53 Identities=9% Similarity=0.006 Sum_probs=34.1
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccC---CccHHHHHHHHHH
Q 040546 151 EDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKG---NEGMVMLKRALNL 207 (225)
Q Consensus 151 ~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g---~~~~~~Lk~aL~~ 207 (225)
+..+|.+.+|+++|.+.++.|-.... +. .--.|.+..... ...+.+|.+.|++
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~---s~-~~isftv~~~~~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST---SE-TNVTVSLDPDPNGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeCcccccchHHHHHHHHHHHh
Confidence 45689999999999999988765542 22 223455554431 1245666666665
No 151
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=41.97 E-value=32 Score=23.44 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=26.6
Q ss_pred CeEEEEEEcC----CCCChHHHHHHHHHhCCCeEEEEE
Q 040546 142 GMLKVTLSCE----DQPELMSDLSRALRSVKGRLVRAE 175 (225)
Q Consensus 142 ~~v~I~i~C~----~r~glL~~Il~aL~~l~L~Vv~A~ 175 (225)
+-..|+|.++ +.+|++..+..+|.+.|+.|.-.+
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 3456777776 578999999999999999987555
No 152
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=41.58 E-value=15 Score=30.18 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhHHHHHhhCCCC
Q 040546 65 AERRRRLRINDQYDNLRKILPNL 87 (225)
Q Consensus 65 ~Er~RR~~in~~~~~Lr~lvP~~ 87 (225)
.||.|-.++|+.+.-|++|+|..
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgs 51 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGS 51 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCC
Confidence 58889889999999999999965
No 153
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=41.56 E-value=43 Score=31.75 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=29.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEM 176 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~i 176 (225)
.++|.|++|-|+..+|++.|-.-++++-..+|
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEi 33 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEI 33 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceee
Confidence 58899999999999999999999999888888
No 154
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=41.52 E-value=92 Score=19.80 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=21.0
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEE
Q 040546 151 EDQPELMSDLSRALRSVKGRLVRAE 175 (225)
Q Consensus 151 ~~r~glL~~Il~aL~~l~L~Vv~A~ 175 (225)
.+.+|.+.+++++|.+.++.+.-.+
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 11 RSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEE
Confidence 3467999999999999999986555
No 155
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.51 E-value=81 Score=21.12 Aligned_cols=27 Identities=4% Similarity=-0.101 Sum_probs=21.4
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEE
Q 040546 152 DQPELMSDLSRALRSVKGRLVRAEMVP 178 (225)
Q Consensus 152 ~r~glL~~Il~aL~~l~L~Vv~A~ist 178 (225)
+.+|++.+++++|.+.|+.+.-...++
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 357899999999999999986554444
No 156
>PRK08639 threonine dehydratase; Validated
Probab=41.27 E-value=1.9e+02 Score=27.14 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=40.1
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCE-EEEE-EEEEeccCCccHHHHHHHHHH
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCV-LWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~gr-v~~~-~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
+..+.+++.-+++||-|.++++.+-+.+.+|+..+.-...+. .-.+ +.++.. +.....++.++|.+
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~-~~~h~~~i~~~L~~ 401 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELK-DAEDYDGLIERMEA 401 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeC-CHHHHHHHHHHHHH
Confidence 457889999999999999999955555546665544321111 1112 223322 33446677777765
No 157
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.72 E-value=1.3e+02 Score=21.44 Aligned_cols=62 Identities=15% Similarity=0.090 Sum_probs=37.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
+...|.-|.|||-|.+.++.|.. +-+|+.-+....++..-.+++--...+. ....+.+.|.+
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR~~~~~~a~vlvGi~~~~~-~~~~l~~~l~~ 63 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELLP-KWNITLFHYRNQGSDYGRVLVGIQVPDA-DLDELKERLDA 63 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEecCCCCceeEEEEEEeChH-HHHHHHHHHHH
Confidence 45667788999999999999943 6677777766555432223222222122 45666666655
No 158
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=40.07 E-value=1.2e+02 Score=20.85 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=31.2
Q ss_pred EEEEEEcCCCCC-hHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccC
Q 040546 144 LKVTLSCEDQPE-LMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKG 194 (225)
Q Consensus 144 v~I~i~C~~r~g-lL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g 194 (225)
+.+...-+.... ++.++.+.+ .....+++++|..++|..+-.+++.-.++
T Consensus 5 ~~l~f~g~~~~~piis~l~~~~-~v~~nIl~g~i~~i~~~~~G~l~l~l~g~ 55 (76)
T PF09383_consen 5 VRLTFTGNSAQEPIISQLIREF-GVDVNILHGNIEEIQGTPFGILILELPGD 55 (76)
T ss_dssp EEEEEESCSSSSCHHHHHHHHH-T-EEEEEEEEEEEETTEEEEEEEEEEES-
T ss_pred EEEEEcCCCcCchHHHHHHHHh-CCCEEEEEEEeEEcCCeeEEEEEEEEECC
Confidence 444444443333 444444322 33466889999999999999998887633
No 159
>PRK14637 hypothetical protein; Provisional
Probab=39.29 E-value=1.8e+02 Score=23.48 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=41.8
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC--ccHHHHHHHHHHhhcC
Q 040546 153 QPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDR 211 (225)
Q Consensus 153 r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~--~~~~~Lk~aL~~vi~~ 211 (225)
.-|-...+-.+++++|++++..++..-++...--+.+.+.+|. .+...+-++|..+++.
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEA 67 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 3467778888999999999999998887653334444444442 4567778888777763
No 160
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=38.51 E-value=94 Score=19.00 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=20.3
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEE
Q 040546 153 QPELMSDLSRALRSVKGRLVRAEM 176 (225)
Q Consensus 153 r~glL~~Il~aL~~l~L~Vv~A~i 176 (225)
.+|.+.+++++|.+.++.+.....
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEc
Confidence 679999999999999988875543
No 161
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=37.60 E-value=38 Score=20.37 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhHHHHHh
Q 040546 64 EAERRRRLRINDQYDNLRK 82 (225)
Q Consensus 64 ~~Er~RR~~in~~~~~Lr~ 82 (225)
.-=|+||+.++.++..||.
T Consensus 11 eqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 11 EQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3447889999999998875
No 162
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=37.33 E-value=1.6e+02 Score=24.32 Aligned_cols=48 Identities=13% Similarity=0.283 Sum_probs=35.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe---CCEEEEEEEEEe
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV---GGRIKCVLWVQG 191 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~---~grv~~~~~v~~ 191 (225)
+.+.|.-+++||-|+.+++-|.+.|..+++.--+.- ++++-.-+.+..
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~ 56 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEG 56 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEe
Confidence 556677789999999999999999988886655443 566554444444
No 163
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=36.22 E-value=2.3e+02 Score=22.75 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=37.0
Q ss_pred HHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC--ccHHHHHHHHHHhhcCC
Q 040546 160 LSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDRP 212 (225)
Q Consensus 160 Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~--~~~~~Lk~aL~~vi~~~ 212 (225)
+-.++.++|+++...++..-++...--+.+...+|. ..+..+-++|..+++..
T Consensus 13 ~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~ 67 (154)
T PRK00092 13 IEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVE 67 (154)
T ss_pred HHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 346678899999999998876554434455543332 45778888999888743
No 164
>PRK06349 homoserine dehydrogenase; Provisional
Probab=36.20 E-value=1.6e+02 Score=27.77 Aligned_cols=34 Identities=9% Similarity=0.114 Sum_probs=29.4
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEM 176 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~i 176 (225)
...+++..++++|.|.+|...|.+.++.+.+..-
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q 381 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQ 381 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEe
Confidence 5788999999999999999999999988775543
No 165
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=34.29 E-value=10 Score=38.16 Aligned_cols=58 Identities=26% Similarity=0.338 Sum_probs=47.6
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHhhCCCC-----CcCChhhhhHHHHHHHHHHHHHHHHHH
Q 040546 57 LAAKKHSEAERRRRLRINDQYDNLRKILPNL-----VKVDKASVLAKTIKTVRELQRTVREQK 114 (225)
Q Consensus 57 ~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~-----~k~dK~sil~~ai~yi~~L~~~~~~l~ 114 (225)
.+...|+-+|.+||..+.-.|..|-++.-+. .|+.++.-+..++.||..++.+...+.
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~ 712 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQ 712 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccc
Confidence 3457899999999999999999999998754 356677779999999998887665543
No 166
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=33.92 E-value=1.5e+02 Score=20.00 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=19.9
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEE
Q 040546 153 QPELMSDLSRALRSVKGRLVRAEM 176 (225)
Q Consensus 153 r~glL~~Il~aL~~l~L~Vv~A~i 176 (225)
.+|++.+++++|.+.|+++.-...
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~ 37 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQ 37 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEe
Confidence 578999999999999999864443
No 167
>PRK14644 hypothetical protein; Provisional
Probab=33.26 E-value=2.1e+02 Score=22.72 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=36.0
Q ss_pred HHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhhcC
Q 040546 162 RALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 211 (225)
Q Consensus 162 ~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~~ 211 (225)
..++++|++++..++..-++..+--+++.+. +..+...+-++|..+++.
T Consensus 6 ~~~~~~g~el~dve~~~~~~~~~LrV~Idk~-~iddC~~vSr~is~~LD~ 54 (136)
T PRK14644 6 KLLEKFGNKINEIKIVKEDGDLFLEVILNSR-DLKDIEELTKEISDFIDN 54 (136)
T ss_pred hhHHhcCCEEEEEEEEeCCCCEEEEEEECCC-CHHHHHHHHHHHHHHhcc
Confidence 4678999999999998877655444444432 345678889999999874
No 168
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=32.90 E-value=1.8e+02 Score=25.35 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=42.7
Q ss_pred EEEEEEcCCCCCh-HHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHh
Q 040546 144 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 144 v~I~i~C~~r~gl-L~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
+.+.++|.+..|+ +...+.|++ .|.+++.+.+.-+|++. |+..++.|-..|...
T Consensus 190 i~l~~H~Hn~~GlA~An~laAi~-aG~~~iD~s~~GlG~~a----------GN~~tE~lv~~L~~~ 244 (268)
T cd07940 190 VPISVHCHNDLGLAVANSLAAVE-AGARQVECTINGIGERA----------GNAALEEVVMALKTR 244 (268)
T ss_pred eeEEEEecCCcchHHHHHHHHHH-hCCCEEEEEeecccccc----------ccccHHHHHHHHHhc
Confidence 7899999999997 788888886 59999999998888532 566677776666554
No 169
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=32.85 E-value=52 Score=23.64 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=41.2
Q ss_pred EEEEcCC-CCChHHHHHHHHHhCCCeEEEEEEEEeCCEE---------EEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 146 VTLSCED-QPELMSDLSRALRSVKGRLVRAEMVPVGGRI---------KCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 146 I~i~C~~-r~glL~~Il~aL~~l~L~Vv~A~ist~~grv---------~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
|++--.+ ..|.+..|.+.|-++|+.|.+.+- ..|+. ..++.+.......+...|+.+|..+-.
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~--l~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la~ 74 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR--LSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELAS 74 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH--hhccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4555666 789999999999999988765432 33332 223333333234678899999886544
No 170
>PRK14632 hypothetical protein; Provisional
Probab=32.80 E-value=2.8e+02 Score=22.87 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=34.2
Q ss_pred HHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC--ccHHHHHHHHHHhhcC
Q 040546 162 RALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDR 211 (225)
Q Consensus 162 ~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~--~~~~~Lk~aL~~vi~~ 211 (225)
.+++++|++++..++..-++.++-+ ++.+.+|. .+...+-++|..+|+.
T Consensus 16 pv~~~~G~eLvdve~~~~~~~~lrV-~ID~~~GV~ldDC~~vSr~is~~LD~ 66 (172)
T PRK14632 16 PFLASLGLELWGIELSYGGRTVVRL-FVDGPEGVTIDQCAEVSRHVGLALEV 66 (172)
T ss_pred HHHHHCCCEEEEEEEEeCCCcEEEE-EEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 4568999999999988644444443 44444342 4577888999988884
No 171
>PRK14630 hypothetical protein; Provisional
Probab=32.49 E-value=2.6e+02 Score=22.35 Aligned_cols=56 Identities=5% Similarity=0.033 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC--ccHHHHHHHHHHhhcCC
Q 040546 157 MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDRP 212 (225)
Q Consensus 157 L~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~--~~~~~Lk~aL~~vi~~~ 212 (225)
-.-+-..++++|++++..++..-++...--+.+.+.+|. .+...+-++|...++.+
T Consensus 11 ~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gV~idDC~~vSr~i~~~ld~~ 68 (143)
T PRK14630 11 YNLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDSFGVDTLCDLHKMILLILEAV 68 (143)
T ss_pred HHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 334446689999999999988766543334444444442 45777888888888764
No 172
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=31.02 E-value=1.5e+02 Score=19.24 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.1
Q ss_pred cCCCCChHHHHHHHHHhCCCeEEEE
Q 040546 150 CEDQPELMSDLSRALRSVKGRLVRA 174 (225)
Q Consensus 150 C~~r~glL~~Il~aL~~l~L~Vv~A 174 (225)
.++.+|.+.+++++|.+.|+.+.-.
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i 33 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMI 33 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEE
Confidence 3678899999999999999988533
No 173
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=30.89 E-value=1.8e+02 Score=24.12 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=46.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCE-EEEEEEEEeccCCccHHHHHHHHHHhhcCCC
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCVLWVQGFKGNEGMVMLKRALNLVIDRPV 213 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~gr-v~~~~~v~~~~g~~~~~~Lk~aL~~vi~~~~ 213 (225)
.+.+--.+.+|.|..+...+...|..+-+..+...+.- .....++... +...++.+.+.|..+++...
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-~~~~~EQi~kQL~kLidV~k 74 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-DEQVLEQIIKQLNKLIDVLK 74 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-CcchHHHHHHHHHhhcccee
Confidence 34455578999999999999999888777666555532 3333333332 33457788888888887643
No 174
>PRK14633 hypothetical protein; Provisional
Probab=30.32 E-value=2.9e+02 Score=22.22 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC--ccHHHHHHHHHHhhcC
Q 040546 158 SDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDR 211 (225)
Q Consensus 158 ~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~--~~~~~Lk~aL~~vi~~ 211 (225)
.-+-.+++++|++++..++..-++.++-+++ .+.+|. .+...+-++|..+++.
T Consensus 8 ~lv~p~~~~~G~eL~dve~~~~~~~~lrV~I-D~~~Gv~lddC~~vSr~i~~~LD~ 62 (150)
T PRK14633 8 EIVEPITADLGYILWGIEVVGSGKLTIRIFI-DHENGVSVDDCQIVSKEISAVFDV 62 (150)
T ss_pred HHHHHHHHHCCCEEEEEEEEeCCCcEEEEEE-eCCCCCCHHHHHHHHHHHHHHhcc
Confidence 3445678999999999999877776554444 444442 4578889999999984
No 175
>PLN02550 threonine dehydratase
Probab=29.29 E-value=2.8e+02 Score=27.62 Aligned_cols=63 Identities=6% Similarity=0.046 Sum_probs=38.1
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC-CEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 142 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 142 ~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~-grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
..+.+.+.-+++||-|.++++.|-+. +|+..+....+ +.....+.++.. +.....+|.++|.+
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~-~~~~~~~i~~~l~~ 479 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVH-TEQELQALKKRMES 479 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeC-CHHHHHHHHHHHHH
Confidence 45788888999999999999999886 55555554433 222222333322 32334555555544
No 176
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.10 E-value=1.5e+02 Score=19.77 Aligned_cols=21 Identities=10% Similarity=-0.027 Sum_probs=17.7
Q ss_pred CCCChHHHHHHHHHhCCCeEE
Q 040546 152 DQPELMSDLSRALRSVKGRLV 172 (225)
Q Consensus 152 ~r~glL~~Il~aL~~l~L~Vv 172 (225)
..+|++.+++++|.+.++.++
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i 32 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLV 32 (63)
T ss_pred cCccHHHHHHHHHhcCCceEE
Confidence 568999999999999876664
No 177
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=28.27 E-value=1.6e+02 Score=25.93 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=42.9
Q ss_pred EEEEEEcCCCCCh-HHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 144 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 144 v~I~i~C~~r~gl-L~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
+.|.++|.+..|+ +...+.|++ .|.+.+++.+.-.|++ -|+..+++|..+|..
T Consensus 193 ~~l~~H~Hnd~GlA~aN~laA~~-aGa~~vd~sv~GlG~~----------aGN~~~E~l~~~L~~ 246 (275)
T cd07937 193 LPIHLHTHDTSGLAVATYLAAAE-AGVDIVDTAISPLSGG----------TSQPSTESMVAALRG 246 (275)
T ss_pred CeEEEEecCCCChHHHHHHHHHH-hCCCEEEEecccccCC----------cCChhHHHHHHHHHc
Confidence 6789999999997 788888886 5999999999999987 256677777766654
No 178
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=27.94 E-value=1.9e+02 Score=25.05 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=41.6
Q ss_pred EEEEEEcCCCCCh-HHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 144 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 144 v~I~i~C~~r~gl-L~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
+.+.++|.+..|+ +...+.|++ .|.+.+++.+.-.|++ -|+..++.+...|+.
T Consensus 186 ~~l~~H~Hn~~GlA~AN~laAi~-aGa~~vd~s~~GlG~~----------aGN~~~E~lv~~L~~ 239 (263)
T cd07943 186 TPVGFHGHNNLGLAVANSLAAVE-AGATRIDGSLAGLGAG----------AGNTPLEVLVAVLER 239 (263)
T ss_pred ceEEEEecCCcchHHHHHHHHHH-hCCCEEEeecccccCC----------cCCccHHHHHHHHHh
Confidence 5789999999997 788888886 5999999999999987 355666666555543
No 179
>PRK14645 hypothetical protein; Provisional
Probab=27.81 E-value=3.3e+02 Score=22.08 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=37.8
Q ss_pred hHHHHHHHHHhCCCeEEEEEEEEeCC-EEEEEEEEEec-cCC---ccHHHHHHHHHHhhcC
Q 040546 156 LMSDLSRALRSVKGRLVRAEMVPVGG-RIKCVLWVQGF-KGN---EGMVMLKRALNLVIDR 211 (225)
Q Consensus 156 lL~~Il~aL~~l~L~Vv~A~ist~~g-rv~~~~~v~~~-~g~---~~~~~Lk~aL~~vi~~ 211 (225)
+-.-|-..++++|++++..++..-++ .++- +++... .+. .+...+-++|..+|+.
T Consensus 11 i~~li~~~~~~~G~elvdve~~~~~~~~ilr-V~ID~~~~~~v~lddC~~vSr~is~~LD~ 70 (154)
T PRK14645 11 LQQLAEGALEPLGYEVLEVQVQRSGGKRIVL-VRIDRKDEQPVTVEDLERASRALEAELDR 70 (154)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEE-EEEECCCCCCcCHHHHHHHHHHHHHHhcc
Confidence 34444567789999999999987764 4444 444432 222 4577788999999974
No 180
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.00 E-value=1.9e+02 Score=18.97 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=18.7
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeE
Q 040546 145 KVTLSCE---DQPELMSDLSRALRSVKGRL 171 (225)
Q Consensus 145 ~I~i~C~---~r~glL~~Il~aL~~l~L~V 171 (225)
.|.+.+. .++|++.+++++|.+.++..
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~~ 32 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVRM 32 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeEE
Confidence 3455453 57899999999997654443
No 181
>PRK08818 prephenate dehydrogenase; Provisional
Probab=26.73 E-value=4e+02 Score=24.81 Aligned_cols=45 Identities=9% Similarity=0.012 Sum_probs=32.1
Q ss_pred EEEEcC-CCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEe
Q 040546 146 VTLSCE-DQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQG 191 (225)
Q Consensus 146 I~i~C~-~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~ 191 (225)
+.+.-+ ++||.|.+|+..|...|+++.+-++.......- .|.+.-
T Consensus 298 l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y-~f~i~~ 343 (370)
T PRK08818 298 LSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGEL-HFRIGF 343 (370)
T ss_pred EEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceE-EEEEEE
Confidence 333345 899999999999999999999999844333222 255443
No 182
>PRK14640 hypothetical protein; Provisional
Probab=26.42 E-value=3.4e+02 Score=21.80 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC--ccHHHHHHHHHHhhcC
Q 040546 159 DLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDR 211 (225)
Q Consensus 159 ~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~--~~~~~Lk~aL~~vi~~ 211 (225)
-+-..++++|++++..++..-++...--+++...+|. .+...+-++|..+++.
T Consensus 11 li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~ 65 (152)
T PRK14640 11 LLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDV 65 (152)
T ss_pred HHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 3445678999999999998876544434455544442 4578889999999984
No 183
>PRK14634 hypothetical protein; Provisional
Probab=25.68 E-value=3.3e+02 Score=22.08 Aligned_cols=52 Identities=6% Similarity=0.006 Sum_probs=36.2
Q ss_pred HHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccC--C--ccHHHHHHHHHHhhcC
Q 040546 160 LSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKG--N--EGMVMLKRALNLVIDR 211 (225)
Q Consensus 160 Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g--~--~~~~~Lk~aL~~vi~~ 211 (225)
+-..++++|++++..++..-++...--+++.+.+| . .+...+-++|..+++.
T Consensus 13 ~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~ 68 (155)
T PRK14634 13 ASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEA 68 (155)
T ss_pred HHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcc
Confidence 34567899999999999887654433444454444 2 3567788999998884
No 184
>PRK14638 hypothetical protein; Provisional
Probab=25.55 E-value=3.6e+02 Score=21.71 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=36.4
Q ss_pred HHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC---ccHHHHHHHHHHhhcC
Q 040546 160 LSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN---EGMVMLKRALNLVIDR 211 (225)
Q Consensus 160 Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~---~~~~~Lk~aL~~vi~~ 211 (225)
+-.+++++|++++..++..-++...--+.+.+..|. .+...+-++|..+++.
T Consensus 14 ~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~ 68 (150)
T PRK14638 14 AERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDR 68 (150)
T ss_pred HHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhcc
Confidence 345678999999999999876543334444544442 4577888899988884
No 185
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.19 E-value=1.1e+02 Score=21.92 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 040546 96 LAKTIKTVRELQRTVREQKALCQ 118 (225)
Q Consensus 96 l~~ai~yi~~L~~~~~~l~~~~~ 118 (225)
+..||+-|.-||-++++|+.+..
T Consensus 13 iqqAvdTI~LLQmEieELKEknn 35 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 56799999999999999987654
No 186
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=24.29 E-value=1.7e+02 Score=21.14 Aligned_cols=53 Identities=9% Similarity=-0.026 Sum_probs=36.0
Q ss_pred HHHHHHHhCCC--eEEEEEEEEeCCE--EEEEEEEEec-------cC---------CccHHHHHHHHHHhhcC
Q 040546 159 DLSRALRSVKG--RLVRAEMVPVGGR--IKCVLWVQGF-------KG---------NEGMVMLKRALNLVIDR 211 (225)
Q Consensus 159 ~Il~aL~~l~L--~Vv~A~ist~~gr--v~~~~~v~~~-------~g---------~~~~~~Lk~aL~~vi~~ 211 (225)
.|-++|+++|+ ++.++.++.+.+. ..+.++.... .+ ..+..++++.|..++.+
T Consensus 6 kIk~~L~e~Gi~~~ve~~diss~~~~~~~aDiiVtt~~l~~~~~~~g~~~l~gI~N~~d~~ei~~~~~~~~~~ 78 (85)
T PRK10222 6 KVDQFLTQSNIDHTVNSCAVGEYKSELSGADIIIASTHIAGEITVTGNKYVVGVRNMLSPADFGPKLLEVIKE 78 (85)
T ss_pred HHHHHHHHcCCCeEEEEeehhhcccCCCCCCEEEECccchhhhccCCCceEEEEecccCHHHHHHHHHHHHHH
Confidence 56688999999 6778888777766 3344433311 11 15678888888888876
No 187
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=23.66 E-value=5e+02 Score=29.05 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=45.9
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEE---EEE----------e------CCEEEEEEEEEeccC--CccHHH
Q 040546 142 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAE---MVP----------V------GGRIKCVLWVQGFKG--NEGMVM 200 (225)
Q Consensus 142 ~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~---ist----------~------~grv~~~~~v~~~~g--~~~~~~ 200 (225)
....|+|.|++.|-|...|..+|...|+.+...- +.. + ++...+++++.-... ......
T Consensus 16 ~~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i~HPVl~V~RD~~G~L~~v~~~~~~~~~~ES~I~ieId~~~d~~~~~~ 95 (1528)
T PF05088_consen 16 DHTVIEIVTDDMPFLVDSVRMELNRQGLTIHLIIHPVLNVERDADGKLVAVGPADDSGGTRESWIHIEIDRQSDPEELEA 95 (1528)
T ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhCCCceEEEecCcEEEEECCCCcEEEecCCCCCCCceEEEEEEEEcCCCCHHHHHH
Confidence 4678999999999999999999999999876432 111 0 223334444443321 245667
Q ss_pred HHHHHHHhhc
Q 040546 201 LKRALNLVID 210 (225)
Q Consensus 201 Lk~aL~~vi~ 210 (225)
|++.|..++.
T Consensus 96 L~~~L~~VL~ 105 (1528)
T PF05088_consen 96 LREDLERVLE 105 (1528)
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 188
>PRK14646 hypothetical protein; Provisional
Probab=23.27 E-value=4e+02 Score=21.52 Aligned_cols=55 Identities=7% Similarity=0.112 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccC-C---ccHHHHHHHHHHhhcC
Q 040546 157 MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKG-N---EGMVMLKRALNLVIDR 211 (225)
Q Consensus 157 L~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g-~---~~~~~Lk~aL~~vi~~ 211 (225)
..-+-.+++++|++++..++..-++..+--+++.+.+| . .+...+-++|..+++.
T Consensus 10 ~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~ 68 (155)
T PRK14646 10 EILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIEN 68 (155)
T ss_pred HHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCc
Confidence 34455678899999999999887765443444454432 2 3567888899988874
No 189
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=23.05 E-value=1.2e+02 Score=21.46 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 040546 96 LAKTIKTVRELQRTVREQKALC 117 (225)
Q Consensus 96 l~~ai~yi~~L~~~~~~l~~~~ 117 (225)
+..||+-|.-|+.++++|+.+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n 34 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKN 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998753
No 190
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.28 E-value=2.6e+02 Score=18.87 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhHHHHHhhCCCCCcCChhhhhHHHHHHHHHHHHHHHHHH
Q 040546 64 EAERRRRLRINDQYDNLRKILPNLVKVDKASVLAKTIKTVRELQRTVREQK 114 (225)
Q Consensus 64 ~~Er~RR~~in~~~~~Lr~lvP~~~k~dK~sil~~ai~yi~~L~~~~~~l~ 114 (225)
..=|.-|=..++.+..+..++- .++ .++|.+||+++-+.++...
T Consensus 14 ~~lR~~RHD~~NhLqvI~gllq-lg~------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 14 DSLRAQRHDFLNHLQVIYGLLQ-LGK------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHH-CCC------HHHHHHHHHHHHHHHHHHH
Confidence 3346667778999999999984 233 4678999999999888763
No 191
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=22.14 E-value=2.8e+02 Score=19.25 Aligned_cols=51 Identities=4% Similarity=0.001 Sum_probs=32.2
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC-ccHHHHHHHHHH
Q 040546 153 QPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN-EGMVMLKRALNL 207 (225)
Q Consensus 153 r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~-~~~~~Lk~aL~~ 207 (225)
.+|.+.+|+++|.+.|+.+-.... ++ .--.|.+....-. ..+.+|.+.|++
T Consensus 14 ~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~~~~~~~~l~~l~~el~~ 65 (73)
T cd04934 14 SHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHMENAEDTNLDAAVKDLQK 65 (73)
T ss_pred ccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEehhhcChHHHHHHHHHHHH
Confidence 589999999999999988765542 33 2234445443211 245666666665
No 192
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.70 E-value=3e+02 Score=22.42 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=36.1
Q ss_pred HHHHhCCCeEEEEEEEEeCC-EEEEEEEEEeccCC--ccHHHHHHHHHHhhcC
Q 040546 162 RALRSVKGRLVRAEMVPVGG-RIKCVLWVQGFKGN--EGMVMLKRALNLVIDR 211 (225)
Q Consensus 162 ~aL~~l~L~Vv~A~ist~~g-rv~~~~~v~~~~g~--~~~~~Lk~aL~~vi~~ 211 (225)
-.++.+|++++..++...+. .++-++ +...++. .+...+.+++..+++.
T Consensus 16 p~~~~lG~ELv~ve~~~~~~~~~lrI~-id~~g~v~lddC~~vSr~is~~LD~ 67 (153)
T COG0779 16 PVVESLGFELVDVEFVKEGRDSVLRIY-IDKEGGVTLDDCADVSRAISALLDV 67 (153)
T ss_pred HhHhhcCcEEEEEEEEEcCCCcEEEEE-eCCCCCCCHHHHHHHHHHHHHHhcc
Confidence 45688999999999999994 555444 4433332 4678889999999983
No 193
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=21.13 E-value=1.2e+02 Score=24.06 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=21.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeE
Q 040546 146 VTLSCEDQPELMSDLSRALRSVKGRL 171 (225)
Q Consensus 146 I~i~C~~r~glL~~Il~aL~~l~L~V 171 (225)
+-|.-+++||-|..|+.+|...++.+
T Consensus 72 laVEmeD~PG~l~~I~~vl~d~diNl 97 (142)
T COG4747 72 LAVEMEDVPGGLSRIAEVLGDADINL 97 (142)
T ss_pred EEEEecCCCCcHHHHHHHHhhcCcCc
Confidence 44677899999999999998876543
No 194
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=20.93 E-value=3.2e+02 Score=25.08 Aligned_cols=39 Identities=15% Similarity=0.353 Sum_probs=33.2
Q ss_pred EEEEEEcCCCCCh-HHHHHHHHHhCCCeEEEEEEEEeCCEE
Q 040546 144 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRI 183 (225)
Q Consensus 144 v~I~i~C~~r~gl-L~~Il~aL~~l~L~Vv~A~ist~~grv 183 (225)
+.|.++|.+..|+ +...+.+++. |.+.+++.+.-+|++.
T Consensus 185 ~~l~~H~Hnd~GlA~AN~laA~~a-Ga~~vd~s~~GlGera 224 (363)
T TIGR02090 185 LPISVHCHNDFGLATANSIAGVKA-GAEQVHVTVNGIGERA 224 (363)
T ss_pred ceEEEEecCCCChHHHHHHHHHHC-CCCEEEEEeecccccc
Confidence 6789999999997 7888889875 9999999998888653
No 195
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=20.61 E-value=47 Score=24.29 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=42.5
Q ss_pred HHHHhHHHHHhhCCCCCcCChhhhhHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCceeeeEEecCCCeEEEEEEcC
Q 040546 72 RINDQYDNLRKILPNLVKVDKASVLAKTIKTVRELQRTVREQKALCQVHEECVFPSEANELSLRNCNRDRGMLKVTLSCE 151 (225)
Q Consensus 72 ~in~~~~~Lr~lvP~~~k~dK~sil~~ai~yi~~L~~~~~~l~~~~~~~e~~~~P~~~~ev~v~~~~~~e~~v~I~i~C~ 151 (225)
++++.+..|+.-+-.....| .++..-++.|..+++..-... .......++-.+.+.. -...++..=|
T Consensus 1 kL~~~L~~L~~eL~~~~~ld-----~~~~~~L~~l~~dIe~~L~~~-~~~~~~~~~l~d~l~~-------av~~FE~~HP 67 (85)
T PF14357_consen 1 KLQELLEKLHQELEQNPPLD-----EETRAELSSLDDDIEAQLAEE-DEAEAEDESLVDRLNE-------AVERFEASHP 67 (85)
T ss_pred CHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHHHHHHHhcC-CcccccchhHHHHHHH-------HHHHHHHhCC
Confidence 36777777777775444444 345556666667766643220 0000000110111110 0111233334
Q ss_pred CCCChHHHHHHHHHhCCC
Q 040546 152 DQPELMSDLSRALRSVKG 169 (225)
Q Consensus 152 ~r~glL~~Il~aL~~l~L 169 (225)
.=.+.+-.|++.|.++|+
T Consensus 68 ~l~~~lr~i~~sLa~MGI 85 (85)
T PF14357_consen 68 KLAGILRNIMDSLANMGI 85 (85)
T ss_pred cHHHHHHHHHHHHHHCCC
Confidence 444679999999999885
No 196
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=20.53 E-value=1.6e+02 Score=27.61 Aligned_cols=61 Identities=11% Similarity=0.017 Sum_probs=43.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
...+-+.-.++||++..|..+|.+.++.|-.-.....++....++-+... . ..++.+.|+.
T Consensus 338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~~---~-~~~~~~~i~~ 398 (409)
T PRK11790 338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDAD---Y-AEEALDALKA 398 (409)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCCC---C-cHHHHHHHHc
Confidence 35566667889999999999999999999877777777766654433331 1 2355555553
No 197
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.26 E-value=1.5e+02 Score=21.66 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 040546 96 LAKTIKTVRELQRTVREQKALCQ 118 (225)
Q Consensus 96 l~~ai~yi~~L~~~~~~l~~~~~ 118 (225)
+..||+-|.-||-++++|+.+..
T Consensus 13 IqqAvdtI~LLqmEieELKekn~ 35 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999987654
No 198
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=20.02 E-value=4.3e+02 Score=20.62 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=33.2
Q ss_pred HHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC--ccHHHHHHHHHHhhcC
Q 040546 162 RALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDR 211 (225)
Q Consensus 162 ~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~--~~~~~Lk~aL~~vi~~ 211 (225)
..++++|+++...++..-++...--+.+...+|. ..+..+-++|...++.
T Consensus 4 ~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~gv~lddc~~~sr~i~~~LD~ 55 (141)
T PF02576_consen 4 PLLEELGLELVDVEVVKEGGNRILRVFIDKDGGVSLDDCEKVSRAISALLDA 55 (141)
T ss_dssp HHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS---HHHHHHHHHHHGGGTTT
T ss_pred cchhhcCCEEEEEEEEECCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHcc
Confidence 5678999999999999999875544555444331 3466677888888876
Done!