Query 040546
Match_columns 225
No_of_seqs 205 out of 1361
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:11:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 2.6E-17 9E-22 120.0 7.5 63 56-118 4-67 (82)
2 4h10_B Circadian locomoter out 99.6 3.6E-16 1.2E-20 110.7 6.5 58 56-113 6-64 (71)
3 4ati_A MITF, microphthalmia-as 99.6 1.2E-15 4E-20 118.4 7.4 62 56-117 25-90 (118)
4 1a0a_A BHLH, protein (phosphat 99.6 1.3E-16 4.3E-21 110.8 0.9 52 59-110 3-61 (63)
5 1hlo_A Protein (transcription 99.6 2.2E-15 7.6E-20 109.1 7.1 63 56-118 10-74 (80)
6 1nkp_B MAX protein, MYC proto- 99.6 2.4E-15 8E-20 109.7 7.0 61 58-118 2-64 (83)
7 1an4_A Protein (upstream stimu 99.6 4.6E-16 1.6E-20 108.4 2.8 53 58-110 5-63 (65)
8 1nkp_A C-MYC, MYC proto-oncoge 99.6 3.1E-15 1.1E-19 110.3 7.2 61 57-117 5-68 (88)
9 4h10_A ARYL hydrocarbon recept 99.6 8.3E-16 2.8E-20 109.6 3.7 53 56-108 7-63 (73)
10 1nlw_A MAD protein, MAX dimeri 99.5 4.3E-14 1.5E-18 102.5 7.3 60 59-118 2-64 (80)
11 3u5v_A Protein MAX, transcript 99.5 1.7E-14 5.9E-19 103.5 4.2 58 57-114 4-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.3 4.9E-12 1.7E-16 88.8 4.9 54 57-110 11-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.2 1.5E-11 5.2E-16 84.3 5.5 54 58-111 2-58 (60)
14 4f3l_A Mclock, circadian locom 99.1 4.7E-11 1.6E-15 107.4 5.4 55 55-109 9-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 3.2E-10 1.1E-14 103.1 5.3 53 57-109 12-68 (387)
16 2lfh_A DNA-binding protein inh 98.7 3.6E-09 1.2E-13 73.7 1.6 46 63-108 19-67 (68)
17 4ath_A MITF, microphthalmia-as 98.7 3.3E-08 1.1E-12 71.5 6.1 46 70-115 4-53 (83)
18 4aya_A DNA-binding protein inh 98.2 3.2E-06 1.1E-10 62.8 6.2 48 65-112 32-82 (97)
19 1zpv_A ACT domain protein; str 97.8 0.00036 1.2E-08 49.7 11.3 67 143-210 5-71 (91)
20 1u8s_A Glycine cleavage system 97.4 0.0009 3.1E-08 54.5 9.9 66 143-210 6-71 (192)
21 2nyi_A Unknown protein; protei 97.3 0.00083 2.8E-08 55.2 8.5 68 143-210 5-74 (195)
22 2ko1_A CTR148A, GTP pyrophosph 97.1 0.0021 7.3E-08 45.0 7.6 63 143-206 5-67 (88)
23 2nyi_A Unknown protein; protei 96.8 0.0056 1.9E-07 50.1 8.8 67 143-211 93-165 (195)
24 1u8s_A Glycine cleavage system 96.5 0.019 6.6E-07 46.4 10.1 69 142-211 92-168 (192)
25 3p96_A Phosphoserine phosphata 96.2 0.013 4.4E-07 52.7 8.2 68 143-210 12-79 (415)
26 3o1l_A Formyltetrahydrofolate 96.1 0.048 1.6E-06 48.0 11.0 70 141-210 20-91 (302)
27 3obi_A Formyltetrahydrofolate 95.8 0.053 1.8E-06 47.3 10.0 69 142-210 5-75 (288)
28 3n0v_A Formyltetrahydrofolate 95.4 0.083 2.8E-06 46.0 9.6 68 143-211 8-77 (286)
29 3lou_A Formyltetrahydrofolate 95.2 0.089 3.1E-06 46.0 9.1 68 143-210 10-81 (292)
30 2jhe_A Transcription regulator 95.1 0.062 2.1E-06 41.8 7.3 60 145-208 2-61 (190)
31 2f1f_A Acetolactate synthase i 94.2 0.095 3.3E-06 42.1 6.3 65 144-210 4-70 (164)
32 3nrb_A Formyltetrahydrofolate 93.3 0.45 1.5E-05 41.4 9.5 67 143-211 7-75 (287)
33 2pc6_A Probable acetolactate s 93.3 0.13 4.3E-06 41.4 5.5 65 144-210 5-71 (165)
34 1y7p_A Hypothetical protein AF 92.8 0.27 9.1E-06 41.4 6.9 61 143-207 4-69 (223)
35 2fgc_A Acetolactate synthase, 91.7 0.52 1.8E-05 38.8 7.3 66 144-211 30-97 (193)
36 3luy_A Probable chorismate mut 80.1 13 0.00043 32.9 10.1 57 152-209 217-274 (329)
37 2f06_A Conserved hypothetical 79.8 12 0.00042 27.9 8.9 56 146-207 75-130 (144)
38 2qmx_A Prephenate dehydratase; 79.1 4.4 0.00015 35.1 6.7 61 148-209 205-266 (283)
39 3mwb_A Prephenate dehydratase; 72.7 8.5 0.00029 33.7 6.9 64 144-208 202-267 (313)
40 2f06_A Conserved hypothetical 71.6 24 0.00083 26.3 8.6 35 144-178 7-41 (144)
41 2qmw_A PDT, prephenate dehydra 70.6 9.1 0.00031 32.7 6.5 62 145-208 188-253 (267)
42 1phz_A Protein (phenylalanine 49.8 24 0.0008 32.4 5.5 62 145-208 36-98 (429)
43 2dtj_A Aspartokinase; protein- 45.6 74 0.0025 24.7 7.4 38 137-174 9-47 (178)
44 3dhx_A Methionine import ATP-b 43.6 86 0.003 22.3 7.2 44 162-208 40-85 (106)
45 2wt7_A Proto-oncogene protein 43.0 56 0.0019 21.4 5.3 17 66-82 1-17 (63)
46 2dt9_A Aspartokinase; protein- 39.3 64 0.0022 24.7 6.0 36 139-174 12-48 (167)
47 2re1_A Aspartokinase, alpha an 39.2 63 0.0022 24.8 5.9 67 138-208 20-88 (167)
48 2re1_A Aspartokinase, alpha an 37.8 88 0.003 23.9 6.6 34 141-174 101-137 (167)
49 3mtj_A Homoserine dehydrogenas 36.2 1E+02 0.0035 28.0 7.6 64 143-210 359-425 (444)
50 2l5g_A GPS2 protein, G protein 31.6 68 0.0023 19.2 3.7 28 90-117 4-31 (38)
51 2dt9_A Aspartokinase; protein- 29.3 1.9E+02 0.0063 21.9 7.6 62 141-210 93-157 (167)
52 2lqj_A Mg2+ transport protein; 28.7 1.1E+02 0.0038 21.5 5.3 52 143-194 8-63 (94)
53 2dnr_A Synaptojanin-1; RRM dom 28.7 1.1E+02 0.0039 21.6 5.3 37 141-178 7-49 (91)
54 1pd7_B MAD1; PAH2, SIN3, eukar 28.7 71 0.0024 17.5 3.1 20 90-109 2-21 (26)
55 2dtj_A Aspartokinase; protein- 28.5 1.8E+02 0.0063 22.3 7.1 62 141-210 93-157 (178)
56 1xkm_B Distinctin chain B; por 27.9 67 0.0023 17.2 2.9 20 93-112 3-22 (26)
57 2qrr_A Methionine import ATP-b 27.9 1.5E+02 0.0053 20.6 8.0 49 145-193 25-75 (101)
58 1sc6_A PGDH, D-3-phosphoglycer 27.8 1.3E+02 0.0045 26.7 6.8 62 144-207 332-393 (404)
59 2jee_A YIIU; FTSZ, septum, coi 24.4 70 0.0024 22.4 3.4 23 96-118 15-37 (81)
60 3he4_B Synzip5; heterodimeric 24.2 91 0.0031 18.8 3.4 22 96-117 5-26 (46)
61 3s1t_A Aspartokinase; ACT doma 23.6 2.1E+02 0.0071 22.3 6.6 52 140-191 13-68 (181)
62 1gd2_E Transcription factor PA 21.9 61 0.0021 22.0 2.6 15 101-115 29-43 (70)
63 1p3q_Q VPS9P, vacuolar protein 21.7 75 0.0026 20.5 2.9 26 64-89 3-28 (54)
64 3ced_A Methionine import ATP-b 21.3 2.1E+02 0.0073 19.9 8.3 48 145-193 22-72 (98)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.70 E-value=2.6e-17 Score=119.98 Aligned_cols=63 Identities=29% Similarity=0.354 Sum_probs=58.2
Q ss_pred HHHhhhccHHHHHHHHHHHHhHHHHHhhCCCC-CcCChhhhhHHHHHHHHHHHHHHHHHHhhhc
Q 040546 56 ELAAKKHSEAERRRRLRINDQYDNLRKILPNL-VKVDKASVLAKTIKTVRELQRTVREQKALCQ 118 (225)
Q Consensus 56 ~~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~-~k~dK~sil~~ai~yi~~L~~~~~~l~~~~~ 118 (225)
..++.+|+.+||+||++||+.|..|++|||.. .|+||++||.+||+||+.|+.+++.|+.+..
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~ 67 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENL 67 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999987 8999999999999999999999999987654
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.63 E-value=3.6e-16 Score=110.74 Aligned_cols=58 Identities=26% Similarity=0.351 Sum_probs=53.0
Q ss_pred HHHhhhccHHHHHHHHHHHHhHHHHHhhCCCC-CcCChhhhhHHHHHHHHHHHHHHHHH
Q 040546 56 ELAAKKHSEAERRRRLRINDQYDNLRKILPNL-VKVDKASVLAKTIKTVRELQRTVREQ 113 (225)
Q Consensus 56 ~~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~-~k~dK~sil~~ai~yi~~L~~~~~~l 113 (225)
...+.+|+.+||+||++||++|.+|++|||.. .|+||++||.+||+||+.|+.++.=|
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~ 64 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWL 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 34678999999999999999999999999965 69999999999999999999988755
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.60 E-value=1.2e-15 Score=118.39 Aligned_cols=62 Identities=31% Similarity=0.518 Sum_probs=51.7
Q ss_pred HHHhhhccHHHHHHHHHHHHhHHHHHhhCCCCC----cCChhhhhHHHHHHHHHHHHHHHHHHhhh
Q 040546 56 ELAAKKHSEAERRRRLRINDQYDNLRKILPNLV----KVDKASVLAKTIKTVRELQRTVREQKALC 117 (225)
Q Consensus 56 ~~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~~----k~dK~sil~~ai~yi~~L~~~~~~l~~~~ 117 (225)
..++.+|+.+||+||++||++|..|++|||... |.+|++||.+||+||+.|+.+++.|+...
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999763 67899999999999999999999997643
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.59 E-value=1.3e-16 Score=110.83 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=47.4
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHhhCCCC-------CcCChhhhhHHHHHHHHHHHHHH
Q 040546 59 AKKHSEAERRRRLRINDQYDNLRKILPNL-------VKVDKASVLAKTIKTVRELQRTV 110 (225)
Q Consensus 59 ~~~h~~~Er~RR~~in~~~~~Lr~lvP~~-------~k~dK~sil~~ai~yi~~L~~~~ 110 (225)
+.+|+.+||+||++||+.|..|++|||.. .+.+||+||+.||+||++|++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999944 46679999999999999999765
No 5
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.59 E-value=2.2e-15 Score=109.14 Aligned_cols=63 Identities=25% Similarity=0.423 Sum_probs=57.5
Q ss_pred HHHhhhccHHHHHHHHHHHHhHHHHHhhCCCC--CcCChhhhhHHHHHHHHHHHHHHHHHHhhhc
Q 040546 56 ELAAKKHSEAERRRRLRINDQYDNLRKILPNL--VKVDKASVLAKTIKTVRELQRTVREQKALCQ 118 (225)
Q Consensus 56 ~~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~--~k~dK~sil~~ai~yi~~L~~~~~~l~~~~~ 118 (225)
...+.+|+.+||+||..||+.|..|+++||.. .|.+|++||..||+||+.|+.++++|+.+.+
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~ 74 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999965 6999999999999999999999999987653
No 6
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.58 E-value=2.4e-15 Score=109.67 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=55.6
Q ss_pred HhhhccHHHHHHHHHHHHhHHHHHhhCCC--CCcCChhhhhHHHHHHHHHHHHHHHHHHhhhc
Q 040546 58 AAKKHSEAERRRRLRINDQYDNLRKILPN--LVKVDKASVLAKTIKTVRELQRTVREQKALCQ 118 (225)
Q Consensus 58 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP~--~~k~dK~sil~~ai~yi~~L~~~~~~l~~~~~ 118 (225)
.+.+|+..||+||+.||+.|..|+++||. ..|.+|++||.+||+||+.|+.++++|+.+.+
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~ 64 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999996 48999999999999999999999998876554
No 7
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=4.6e-16 Score=108.42 Aligned_cols=53 Identities=34% Similarity=0.515 Sum_probs=48.6
Q ss_pred HhhhccHHHHHHHHHHHHhHHHHHhhCCCCC------cCChhhhhHHHHHHHHHHHHHH
Q 040546 58 AAKKHSEAERRRRLRINDQYDNLRKILPNLV------KVDKASVLAKTIKTVRELQRTV 110 (225)
Q Consensus 58 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~~------k~dK~sil~~ai~yi~~L~~~~ 110 (225)
.+.+|+.+||+||++||+.|..|++|||... |+||++||.+||+||+.|+++.
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999764 6899999999999999999764
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=3.1e-15 Score=110.34 Aligned_cols=61 Identities=23% Similarity=0.320 Sum_probs=55.2
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHhhCCCC---CcCChhhhhHHHHHHHHHHHHHHHHHHhhh
Q 040546 57 LAAKKHSEAERRRRLRINDQYDNLRKILPNL---VKVDKASVLAKTIKTVRELQRTVREQKALC 117 (225)
Q Consensus 57 ~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~---~k~dK~sil~~ai~yi~~L~~~~~~l~~~~ 117 (225)
..+..|+..||+||+.||++|..|+++||.. .|.+|++||.+||+||+.|+.+.+.+....
T Consensus 5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~ 68 (88)
T 1nkp_A 5 VKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999964 699999999999999999999988876543
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.57 E-value=8.3e-16 Score=109.60 Aligned_cols=53 Identities=32% Similarity=0.523 Sum_probs=48.5
Q ss_pred HHHhhhccHHHHHHHHHHHHhHHHHHhhCCCC----CcCChhhhhHHHHHHHHHHHH
Q 040546 56 ELAAKKHSEAERRRRLRINDQYDNLRKILPNL----VKVDKASVLAKTIKTVRELQR 108 (225)
Q Consensus 56 ~~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~----~k~dK~sil~~ai~yi~~L~~ 108 (225)
..++.+|+.+||+||++||+.|.+|++|||.+ .|+|||+||..||+||+.|+.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 34678999999999999999999999999954 799999999999999999974
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.50 E-value=4.3e-14 Score=102.47 Aligned_cols=60 Identities=20% Similarity=0.318 Sum_probs=54.2
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHhhCCCC---CcCChhhhhHHHHHHHHHHHHHHHHHHhhhc
Q 040546 59 AKKHSEAERRRRLRINDQYDNLRKILPNL---VKVDKASVLAKTIKTVRELQRTVREQKALCQ 118 (225)
Q Consensus 59 ~~~h~~~Er~RR~~in~~~~~Lr~lvP~~---~k~dK~sil~~ai~yi~~L~~~~~~l~~~~~ 118 (225)
+..|+..||+||..||++|..|+++||.. .|.+|++||.+|++||+.|+.+.+.|..+.+
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~ 64 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQID 64 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999954 6788999999999999999999998876543
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.48 E-value=1.7e-14 Score=103.55 Aligned_cols=58 Identities=26% Similarity=0.416 Sum_probs=48.5
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHhhCCC---CCcC-ChhhhhHHHHHHHHHHHHHHHHHH
Q 040546 57 LAAKKHSEAERRRRLRINDQYDNLRKILPN---LVKV-DKASVLAKTIKTVRELQRTVREQK 114 (225)
Q Consensus 57 ~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~---~~k~-dK~sil~~ai~yi~~L~~~~~~l~ 114 (225)
.++..|+..||+||..||+.|..|+.+||. ..|. .|++||..||+||+.|++++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356799999999999999999999999994 3455 688999999999999999999875
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.25 E-value=4.9e-12 Score=88.82 Aligned_cols=54 Identities=22% Similarity=0.383 Sum_probs=49.0
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHhhCCCC--CcCChhhhhHHHHHHHHHHHHHH
Q 040546 57 LAAKKHSEAERRRRLRINDQYDNLRKILPNL--VKVDKASVLAKTIKTVRELQRTV 110 (225)
Q Consensus 57 ~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~--~k~dK~sil~~ai~yi~~L~~~~ 110 (225)
..+..|+..||+|+..||+.|..||++||.. .|.+|+.||..||+||..|++.+
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999954 68899999999999999999765
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.21 E-value=1.5e-11 Score=84.29 Aligned_cols=54 Identities=30% Similarity=0.392 Sum_probs=48.6
Q ss_pred HhhhccHHHHHHHHHHHHhHHHHHhhCCCC---CcCChhhhhHHHHHHHHHHHHHHH
Q 040546 58 AAKKHSEAERRRRLRINDQYDNLRKILPNL---VKVDKASVLAKTIKTVRELQRTVR 111 (225)
Q Consensus 58 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~---~k~dK~sil~~ai~yi~~L~~~~~ 111 (225)
++..|+..||+|+..||+.|..||++||.. .|.+|+.+|..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 356799999999999999999999999954 588999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.11 E-value=4.7e-11 Score=107.44 Aligned_cols=55 Identities=31% Similarity=0.462 Sum_probs=42.7
Q ss_pred hHHHhhhccHHHHHHHHHHHHhHHHHHhhCC-CCCcCChhhhhHHHHHHHHHHHHH
Q 040546 55 KELAAKKHSEAERRRRLRINDQYDNLRKILP-NLVKVDKASVLAKTIKTVRELQRT 109 (225)
Q Consensus 55 ~~~~~~~h~~~Er~RR~~in~~~~~Lr~lvP-~~~k~dK~sil~~ai~yi~~L~~~ 109 (225)
+..++.+|+.+||+||++||+.|.+|++||| +..|+||++||..||+||+.|+..
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 3456789999999999999999999999999 558999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.98 E-value=3.2e-10 Score=103.07 Aligned_cols=53 Identities=32% Similarity=0.498 Sum_probs=49.0
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHhhCC----CCCcCChhhhhHHHHHHHHHHHHH
Q 040546 57 LAAKKHSEAERRRRLRINDQYDNLRKILP----NLVKVDKASVLAKTIKTVRELQRT 109 (225)
Q Consensus 57 ~~~~~h~~~Er~RR~~in~~~~~Lr~lvP----~~~k~dK~sil~~ai~yi~~L~~~ 109 (225)
.++.+|+.+||+||++||+.|.+|++||| ...|+||++||..||+||+.|+..
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 35789999999999999999999999999 568999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.70 E-value=3.6e-09 Score=73.71 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHhHHHHHhhCCCC---CcCChhhhhHHHHHHHHHHHH
Q 040546 63 SEAERRRRLRINDQYDNLRKILPNL---VKVDKASVLAKTIKTVRELQR 108 (225)
Q Consensus 63 ~~~Er~RR~~in~~~~~Lr~lvP~~---~k~dK~sil~~ai~yi~~L~~ 108 (225)
+..||+|+..||+.|..||.+||.. .|.+|..+|.-||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3569999999999999999999954 688999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.68 E-value=3.3e-08 Score=71.47 Aligned_cols=46 Identities=28% Similarity=0.571 Sum_probs=41.2
Q ss_pred HHHHHHhHHHHHhhCCCC----CcCChhhhhHHHHHHHHHHHHHHHHHHh
Q 040546 70 RLRINDQYDNLRKILPNL----VKVDKASVLAKTIKTVRELQRTVREQKA 115 (225)
Q Consensus 70 R~~in~~~~~Lr~lvP~~----~k~dK~sil~~ai~yi~~L~~~~~~l~~ 115 (225)
|..||++|.+|.+|||.. .+.+|++||..||+||+.|++..+.+..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999954 4688999999999999999998887654
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.17 E-value=3.2e-06 Score=62.78 Aligned_cols=48 Identities=25% Similarity=0.439 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhHHHHHhhCCCC---CcCChhhhhHHHHHHHHHHHHHHHH
Q 040546 65 AERRRRLRINDQYDNLRKILPNL---VKVDKASVLAKTIKTVRELQRTVRE 112 (225)
Q Consensus 65 ~Er~RR~~in~~~~~Lr~lvP~~---~k~dK~sil~~ai~yi~~L~~~~~~ 112 (225)
.||.|-..+|+.|..||..||.. .|..|..+|.-||+||..|+.-+++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 35788889999999999999954 5889999999999999999998875
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.80 E-value=0.00036 Score=49.71 Aligned_cols=67 Identities=7% Similarity=0.078 Sum_probs=55.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
.+.+++.|+++||++.+|..+|.+.|+.|.+.+..+.++...-.+.+... +...+..|.++|..+-.
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~-~~~~l~~l~~~L~~~~~ 71 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-EKQDFTYLRNEFEAFGQ 71 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SCCCHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC-CCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999998888877666666543 34578889999887654
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=97.42 E-value=0.0009 Score=54.48 Aligned_cols=66 Identities=14% Similarity=0.292 Sum_probs=55.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
.+.|.|.|+++||++..|..+|.+.|++|..+++.+.+|..+-.+.+.... .....|+++|..+..
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~--~~~~~l~~~L~~~~~ 71 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP--SNITRVETTLPLLGQ 71 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH--HHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC--CCHHHHHHHHHHHHH
Confidence 377999999999999999999999999999999999999888777776432 356788888877653
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.31 E-value=0.00083 Score=55.19 Aligned_cols=68 Identities=19% Similarity=0.210 Sum_probs=53.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCC--ccHHHHHHHHHHhhc
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVID 210 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~--~~~~~Lk~aL~~vi~ 210 (225)
.+.|.|.|++|+|++..|..+|.++|+.|+.+++.+..|.++-.+.+...... .....|+++|..+..
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~~~~~l~~~L~~~~~ 74 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALPGFQI 74 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHSTTCEE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchhHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999888766777543211 125667777765543
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.08 E-value=0.0021 Score=44.98 Aligned_cols=63 Identities=11% Similarity=0.218 Sum_probs=45.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHH
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALN 206 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~ 206 (225)
.+.+++.++++||+|.+|..+|.+.|+.|.+.++.+.++.....+.+... +...+..+.++|.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-~~~~l~~l~~~L~ 67 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-NTDKLTTLMDKLR 67 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-SHHHHHHHHHHHT
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-CHHHHHHHHHHHh
Confidence 46788999999999999999999999999999998877733333334332 2233445555544
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.79 E-value=0.0056 Score=50.13 Aligned_cols=67 Identities=12% Similarity=-0.014 Sum_probs=51.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC------CEEEEEEEEEeccCCccHHHHHHHHHHhhcC
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG------GRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 211 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~------grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~~ 211 (225)
.+.|+|.|++++|++..|..+|.++|+.|..++..+.+ +.++-.+.+... .... ..|+++|..+...
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~-~~l~~~l~~~a~~ 165 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY-QEVVTALSRVEEE 165 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH-HHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc-HHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999876 333333333322 2345 8888888876543
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.51 E-value=0.019 Score=46.42 Aligned_cols=69 Identities=6% Similarity=0.114 Sum_probs=51.7
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCC--------EEEEEEEEEeccCCccHHHHHHHHHHhhcC
Q 040546 142 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG--------RIKCVLWVQGFKGNEGMVMLKRALNLVIDR 211 (225)
Q Consensus 142 ~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~g--------rv~~~~~v~~~~g~~~~~~Lk~aL~~vi~~ 211 (225)
..+.|++.|++++|++.+|.++|.+.|++|..+...+.+. .++-.+.+.. ........|+++|..+...
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~-~~~~~~~~l~~~l~~~~~~ 168 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARV-DSGCNLMQLQEEFDALCTA 168 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEE-CTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeC-CCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999887752 2222223322 2345788899999876543
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=96.22 E-value=0.013 Score=52.73 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=55.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
.+.|++.|++|+|+...|...|-++|..|+.++....+|.++-...+.......+...|+++|..+-.
T Consensus 12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~ 79 (415)
T 3p96_A 12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEAAIR 79 (415)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHHHTSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCcCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999988766666543222345788888877643
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=96.10 E-value=0.048 Score=47.98 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=54.1
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe--CCEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 141 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 141 e~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~--~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
...+.+++.|++|+|+...|...|.+.|+.|+.++...- +|+++-.+.+.......+..+|+++|..+-+
T Consensus 20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~la~ 91 (302)
T 3o1l_A 20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTPIAE 91 (302)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHHHHH
T ss_pred cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999887754 5666544444433334678899998876544
No 27
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=95.82 E-value=0.053 Score=47.32 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=53.1
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--EeCCEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 142 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV--PVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 142 ~~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~is--t~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
..+.+++.|++|+|+...|...|.++|+.|+.++.. ..+|.++-.+.+....+..+..+|+++|..+-+
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~la~ 75 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAA 75 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999999999999988874 345666544445443334678999999876644
No 28
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=95.41 E-value=0.083 Score=46.04 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=52.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--EeCCEEEEEEEEEeccCCccHHHHHHHHHHhhcC
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV--PVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 211 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~is--t~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~~ 211 (225)
.+.+++.|++++|+...|.+.|.+.|+.|+.++.. ..+|+++-.+.+... +..+..+|+++|..+-+.
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~-~~~~~~~L~~~f~~la~~ 77 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQP-DDFDEAGFRAGLAERSEA 77 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC-SSCCHHHHHHHHHHHHGG
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999998877 345665544444332 246789999999876553
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=95.19 E-value=0.089 Score=45.99 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=50.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--EeCCEEEEEEEEEec--cCCccHHHHHHHHHHhhc
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV--PVGGRIKCVLWVQGF--KGNEGMVMLKRALNLVID 210 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~is--t~~grv~~~~~v~~~--~g~~~~~~Lk~aL~~vi~ 210 (225)
.+.+++.|++|+|+...|...|.+.|+.|+.++.. ..+|+++--+.+... ....+..+|+++|..+-+
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~ 81 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAE 81 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999998877 345665543333332 113568889988876544
No 30
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=95.12 E-value=0.062 Score=41.78 Aligned_cols=60 Identities=25% Similarity=0.279 Sum_probs=42.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHh
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
.|+|.|.+|+|++.+|+++|.+.++++..+++.+. |.+. +.+.. ......+.|..+|..+
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~i~--~~~~~-~~~~~~~~L~~~l~~i 61 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GRIY--LNFAE-LEFESFSSLMAEIRRI 61 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TEEE--EEECC-CCHHHHHHHHHHHHHS
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CEEE--EEEEe-CCHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999765 4411 22221 1123355555555554
No 31
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=94.22 E-value=0.095 Score=42.10 Aligned_cols=65 Identities=9% Similarity=0.153 Sum_probs=50.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~--grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
..+.|..++++|+|.+|..+|...|..|.+.++.+.. |...-++.+.+ +...+..|.+.|.++++
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--d~~~leqI~kqL~Kl~d 70 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--DEKVLEQIEKQLHKLVD 70 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--CHHHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--cHHHHHHHHHHHcCCCC
Confidence 4678889999999999999999999999998887654 44555555652 33567888888888765
No 32
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=93.31 E-value=0.45 Score=41.35 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=48.0
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--EeCCEEEEEEEEEeccCCccHHHHHHHHHHhhcC
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV--PVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 211 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~is--t~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~~ 211 (225)
.+.+++.|++|+|+...|...|.++|+.|+.++.. ..+|.++--+.+... .....+|+++|..+-+.
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~--~~~~~~L~~~f~~la~~ 75 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP--VAGVNDFNSAFGKVVEK 75 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC--C---CHHHHHHHHHHGG
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC--CCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999988875 335655533333322 22345888888766543
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=93.28 E-value=0.13 Score=41.44 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=50.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~--grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
..+.+..+++||+|.+|...|...|..|.+.++.+.. |...-++.+.+ ....+..|.+.|.++++
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--d~~~leql~kQL~Kl~d 71 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--PDEIVEQITKQLNKLIE 71 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--CHHHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--cHHHHHHHHHHhcCCCC
Confidence 4678888999999999999999999999998887554 55555556653 23567888888888765
No 34
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=92.80 E-value=0.27 Score=41.43 Aligned_cols=61 Identities=10% Similarity=0.146 Sum_probs=42.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC-----CEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-----GRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~-----grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
.+.+.|.+.+|+|+|.+|+.+|.+.+..+.+.+..+.. +...-. ++..+ . .+..|-+.|++
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d-~-~Le~LL~kLrk 69 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEG-G-DFEKILERVKT 69 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECS-S-CHHHHHHHHHT
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECC-C-CHHHHHHHHhC
Confidence 47788999999999999999999999999999988864 333322 44432 2 66777777664
No 35
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=91.68 E-value=0.52 Score=38.81 Aligned_cols=66 Identities=11% Similarity=0.184 Sum_probs=50.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeC--CEEEEEEEEEeccCCccHHHHHHHHHHhhcC
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 211 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~--grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~~ 211 (225)
-.+.|.-+++||.|.+|...+...|..|.+..+.... |...-++.+.+. ...+..|.+.|..+++.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--e~~ieqL~kQL~KLidV 97 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--DKTIEQIEKQAYKLVEV 97 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--TTHHHHHHHHHTTSTTE
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--HHHHHHHHHHhcCcCce
Confidence 4677888999999999999999999999988886443 445555566543 45678888888887653
No 36
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=80.08 E-value=13 Score=32.85 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=44.3
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEE-EEEEEEeccCCccHHHHHHHHHHhh
Q 040546 152 DQPELMSDLSRALRSVKGRLVRAEMVPVGGRIK-CVLWVQGFKGNEGMVMLKRALNLVI 209 (225)
Q Consensus 152 ~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~-~~~~v~~~~g~~~~~~Lk~aL~~vi 209 (225)
++||.|.++|..+...|++.++.++-...+... +.|++.- .|...-..+++||..+-
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~-eg~~~d~~v~~AL~~L~ 274 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTL-DAAPWEERFRDALVEIA 274 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEE-SSCTTSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEE-eCCcCCHHHHHHHHHHH
Confidence 689999999999999999999999999888764 5666654 34444466777776653
No 37
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=79.81 E-value=12 Score=27.95 Aligned_cols=56 Identities=14% Similarity=0.088 Sum_probs=36.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 146 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 146 I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
+-+.-+++||.+.+++++|.+.|+.|...-.+.-++....++.+. ......++|+.
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~------d~~~A~~~L~~ 130 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPS------NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEES------CHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeC------CHHHHHHHHHH
Confidence 444567999999999999999999996544332345444333331 34555555554
No 38
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=79.12 E-value=4.4 Score=35.05 Aligned_cols=61 Identities=10% Similarity=0.092 Sum_probs=45.4
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCE-EEEEEEEEeccCCccHHHHHHHHHHhh
Q 040546 148 LSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCVLWVQGFKGNEGMVMLKRALNLVI 209 (225)
Q Consensus 148 i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~gr-v~~~~~v~~~~g~~~~~~Lk~aL~~vi 209 (225)
+.-+++||.|.++|..+...|++.++-++-...+. --+.|++.-. |...-..+++||..+-
T Consensus 205 f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e-g~~~d~~v~~aL~~L~ 266 (283)
T 2qmx_A 205 FALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI-GHREDQNVHNALENLR 266 (283)
T ss_dssp EEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE-SCTTSHHHHHHHHHHH
T ss_pred EEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe-cCCCcHHHHHHHHHHH
Confidence 34468999999999999999999999999888765 3456666654 3333356677776543
No 39
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=72.67 E-value=8.5 Score=33.72 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=44.8
Q ss_pred EEEEEEcC-CCCChHHHHHHHHHhCCCeEEEEEEEEeCCEE-EEEEEEEeccCCccHHHHHHHHHHh
Q 040546 144 LKVTLSCE-DQPELMSDLSRALRSVKGRLVRAEMVPVGGRI-KCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 144 v~I~i~C~-~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv-~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
.-|-+.-+ ++||.|.++|..+...|++.++.++-...+.. -+.|++.-. |...-..+++||..+
T Consensus 202 TSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-g~~~d~~v~~aL~~L 267 (313)
T 3mwb_A 202 TTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDAD-GHATDSRVADALAGL 267 (313)
T ss_dssp EEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEE-SCTTSHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEe-CCCCcHHHHHHHHHH
Confidence 33444554 89999999999999999999999998777553 355666644 333334566665554
No 40
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=71.64 E-value=24 Score=26.25 Aligned_cols=35 Identities=9% Similarity=0.147 Sum_probs=29.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP 178 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist 178 (225)
-.+.|.-+++||.+.+|..+|.+.|+.|....+..
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~ 41 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE 41 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence 45677788999999999999999999887665543
No 41
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=70.62 E-value=9.1 Score=32.74 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=44.9
Q ss_pred EEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEEEEeCCE-EEEEEEEEeccCCccHHHHHHHHHHh
Q 040546 145 KVTLSC---EDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 145 ~I~i~C---~~r~glL~~Il~aL~~l~L~Vv~A~ist~~gr-v~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
-+-+.. +++||.|.++|..+...|++.++-++-...+. --+.|++.-. . ..-..+++||..+
T Consensus 188 sl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~-~~d~~v~~aL~~L 253 (267)
T 2qmw_A 188 SLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S-AITTDIKKVIAIL 253 (267)
T ss_dssp EEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C-CSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c-CCcHHHHHHHHHH
Confidence 344455 68999999999999999999999999887754 3455666654 2 2335566666554
No 42
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=49.76 E-value=24 Score=32.36 Aligned_cols=62 Identities=10% Similarity=0.052 Sum_probs=42.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCE-EEEEEEEEeccCCccHHHHHHHHHHh
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~gr-v~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
-|-+..++++|.|.++|..+...|+++++.++-...+. --+.|.|.-. ...-..+++||..+
T Consensus 36 SLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e--h~~d~~v~~AL~eL 98 (429)
T 1phz_A 36 SLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD--KRTKPVLGSIIKSL 98 (429)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC--GGGHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe--eCCCHHHHHHHHHH
Confidence 33344567899999999999999999999999887654 3455666554 32333455555443
No 43
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=45.58 E-value=74 Score=24.73 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=28.3
Q ss_pred EecCCCeEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEE
Q 040546 137 CNRDRGMLKVTLS-CEDQPELMSDLSRALRSVKGRLVRA 174 (225)
Q Consensus 137 ~~~~e~~v~I~i~-C~~r~glL~~Il~aL~~l~L~Vv~A 174 (225)
+....+.+.|+|. -++++|.+.+|+++|.+.|+.|--.
T Consensus 9 Ia~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i 47 (178)
T 2dtj_A 9 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMV 47 (178)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEE
T ss_pred EEecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEE
Confidence 3344556777774 4789999999999999999554433
No 44
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=43.59 E-value=86 Score=22.33 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=29.8
Q ss_pred HHHHhCC--CeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHh
Q 040546 162 RALRSVK--GRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 162 ~aL~~l~--L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
++.++++ +.|+.++|..++|..+-.+++.-.++. ..+.+++...
T Consensus 40 ~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~---~~~~~ai~~L 85 (106)
T 3dhx_A 40 ETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQ---QDTQAAIAWL 85 (106)
T ss_dssp HHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCH---HHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCH---HHHHHHHHHH
Confidence 3345555 558899999999999998888765432 3444444443
No 45
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.98 E-value=56 Score=21.36 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhHHHHHh
Q 040546 66 ERRRRLRINDQYDNLRK 82 (225)
Q Consensus 66 Er~RR~~in~~~~~Lr~ 82 (225)
||++|.+..++..+-++
T Consensus 1 Ekr~rrrerNR~AA~rc 17 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC 17 (63)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH
Confidence 34455555555555554
No 46
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=39.34 E-value=64 Score=24.71 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=27.4
Q ss_pred cCCCeEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEE
Q 040546 139 RDRGMLKVTLSC-EDQPELMSDLSRALRSVKGRLVRA 174 (225)
Q Consensus 139 ~~e~~v~I~i~C-~~r~glL~~Il~aL~~l~L~Vv~A 174 (225)
...+.+.|++.. ++++|.+.+|+.+|.+.|+.|--.
T Consensus 12 ~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I 48 (167)
T 2dt9_A 12 LDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMI 48 (167)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCE
T ss_pred EeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 344567777755 678999999999999988776543
No 47
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=39.19 E-value=63 Score=24.76 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=40.3
Q ss_pred ecCCCeEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEEEE-eCCEEEEEEEEEeccCCccHHHHHHHHHHh
Q 040546 138 NRDRGMLKVTLSC-EDQPELMSDLSRALRSVKGRLVRAEMVP-VGGRIKCVLWVQGFKGNEGMVMLKRALNLV 208 (225)
Q Consensus 138 ~~~e~~v~I~i~C-~~r~glL~~Il~aL~~l~L~Vv~A~ist-~~grv~~~~~v~~~~g~~~~~~Lk~aL~~v 208 (225)
....+...|+|.. ++++|.+.+|+.+|.+.|+.|.....+. .+|...-.|++... ......+.|..+
T Consensus 20 a~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~----~~~~a~~~l~~~ 88 (167)
T 2re1_A 20 AFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRG----DYKQTLEILSER 88 (167)
T ss_dssp EEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGG----GHHHHHHHHHHS
T ss_pred EecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEech----HHHHHHHHHHHH
Confidence 3344567888874 7899999999999999998865443221 13433334555432 123344555543
No 48
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=37.85 E-value=88 Score=23.90 Aligned_cols=34 Identities=12% Similarity=0.019 Sum_probs=27.7
Q ss_pred CCeEEEEEEcCC---CCChHHHHHHHHHhCCCeEEEE
Q 040546 141 RGMLKVTLSCED---QPELMSDLSRALRSVKGRLVRA 174 (225)
Q Consensus 141 e~~v~I~i~C~~---r~glL~~Il~aL~~l~L~Vv~A 174 (225)
++...|.+.... .+|.+.+++++|.+.|+.|...
T Consensus 101 ~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i 137 (167)
T 2re1_A 101 DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI 137 (167)
T ss_dssp SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence 345677777755 8899999999999999998763
No 49
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=36.24 E-value=1e+02 Score=28.02 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=39.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEe---CCEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 143 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV---GGRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 143 ~v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~---~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
.+.+++.+.++||+|.+|..+|.+.++.+-+.--... ++.+ ..+++.- ......++++|..+=.
T Consensus 359 ~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~-~~v~~th---~~~e~~~~~~~~~~~~ 425 (444)
T 3mtj_A 359 AYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQV-DIILLTH---VTLEKNVNAAIAKIEA 425 (444)
T ss_dssp EEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CE-EEEEEEC---SEEHHHHHHHHHHHTT
T ss_pred eeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCc-eEEEEec---cCCHHHHHHHHHHHhc
Confidence 5789999999999999999999999988765332211 1122 2223322 1334666777666533
No 50
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=31.62 E-value=68 Score=19.16 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=23.8
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHhhh
Q 040546 90 VDKASVLAKTIKTVRELQRTVREQKALC 117 (225)
Q Consensus 90 ~dK~sil~~ai~yi~~L~~~~~~l~~~~ 117 (225)
+.-+.-|+++-+-|..|+.+++.|+.++
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999998765
No 51
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=29.31 E-value=1.9e+02 Score=21.94 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=38.0
Q ss_pred CCeEEEEEEcCC---CCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 141 RGMLKVTLSCED---QPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 141 e~~v~I~i~C~~---r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
++...|.+-... .||++.+++++|.+.|+.|.-.. +... .. .+++... ......++|+....
T Consensus 93 ~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~-~i-s~vv~~~----d~~~Av~~Lh~~f~ 157 (167)
T 2dt9_A 93 PDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TSEV-RI-SVIIPAE----YAEAALRAVHQAFE 157 (167)
T ss_dssp CSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--ECSS-EE-EEEEEGG----GHHHHHHHHHHHTC
T ss_pred CCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--ccCC-EE-EEEEeHH----HHHHHHHHHHHHHc
Confidence 345667766654 89999999999999999884332 2233 22 2334432 24555566665543
No 52
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=28.73 E-value=1.1e+02 Score=21.55 Aligned_cols=52 Identities=13% Similarity=0.087 Sum_probs=36.2
Q ss_pred eEEEEEEcCCCC--ChHHHHHHHHHhCCCeEEEEEEEEeC-CEE-EEEEEEEeccC
Q 040546 143 MLKVTLSCEDQP--ELMSDLSRALRSVKGRLVRAEMVPVG-GRI-KCVLWVQGFKG 194 (225)
Q Consensus 143 ~v~I~i~C~~r~--glL~~Il~aL~~l~L~Vv~A~ist~~-grv-~~~~~v~~~~g 194 (225)
.+.|.|.|.... .+..-|+++|+..++.+.+..+..++ +.+ +.+..+.....
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~veI~A~L~at~~~ 63 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVGHT 63 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCEEEEEEEEEESCC
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeEEEEEEEEecCCC
Confidence 477889997543 47888889999999999888866644 334 45555555433
No 53
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.70 E-value=1.1e+02 Score=21.63 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=27.4
Q ss_pred CCeEEEEEEcC------CCCChHHHHHHHHHhCCCeEEEEEEEE
Q 040546 141 RGMLKVTLSCE------DQPELMSDLSRALRSVKGRLVRAEMVP 178 (225)
Q Consensus 141 e~~v~I~i~C~------~r~glL~~Il~aL~~l~L~Vv~A~ist 178 (225)
+..++|.++-. ..+.|+.+|++.+..+| +|+.+.+..
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~~~ 49 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRFVE 49 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEECS
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEEec
Confidence 45677877431 12348999999999999 888888765
No 54
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=28.67 E-value=71 Score=17.52 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=15.5
Q ss_pred CChhhhhHHHHHHHHHHHHH
Q 040546 90 VDKASVLAKTIKTVRELQRT 109 (225)
Q Consensus 90 ~dK~sil~~ai~yi~~L~~~ 109 (225)
.+..-+|-+|.+|+...+++
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45667899999999877663
No 55
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=28.53 E-value=1.8e+02 Score=22.32 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=38.4
Q ss_pred CCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHHhhc
Q 040546 141 RGMLKVTLSCE---DQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 210 (225)
Q Consensus 141 e~~v~I~i~C~---~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~vi~ 210 (225)
++..+|.+... +.+|++.+++.+|.+.|+.|.-.. +-...+ .+.+.. .......++|+..+.
T Consensus 93 ~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~I--s~vV~~----~d~~~Av~~Lh~~F~ 157 (178)
T 2dtj_A 93 DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRI--SVLIRE----DDLDAAARALHEQFQ 157 (178)
T ss_dssp SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEE--EEEEEG----GGHHHHHHHHHHHHT
T ss_pred CCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeE--EEEEeH----HHHHHHHHHHHHHHc
Confidence 34567777664 678999999999999998886533 333322 233322 234555556665554
No 56
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=27.92 E-value=67 Score=17.17 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=15.5
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 040546 93 ASVLAKTIKTVRELQRTVRE 112 (225)
Q Consensus 93 ~sil~~ai~yi~~L~~~~~~ 112 (225)
.|-|-+|-.|+.+|..+++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 45677899999999887653
No 57
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=27.86 E-value=1.5e+02 Score=20.57 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=31.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCC--CeEEEEEEEEeCCEEEEEEEEEecc
Q 040546 145 KVTLSCEDQPELMSDLSRALRSVK--GRLVRAEMVPVGGRIKCVLWVQGFK 193 (225)
Q Consensus 145 ~I~i~C~~r~glL~~Il~aL~~l~--L~Vv~A~ist~~grv~~~~~v~~~~ 193 (225)
++++.......--.-|.++.+.++ ..|+.++|..++|..+-.+++.-.+
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G 75 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFG 75 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEES
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeC
Confidence 455555433332222333444555 5578999999999999888887653
No 58
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=27.79 E-value=1.3e+02 Score=26.74 Aligned_cols=62 Identities=8% Similarity=0.064 Sum_probs=43.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 040546 144 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 207 (225)
Q Consensus 144 v~I~i~C~~r~glL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~g~~~~~~Lk~aL~~ 207 (225)
..+-+.-.++||++..|..+|-+.++.|..-...+.++....++-+... .....++.+.|++
T Consensus 332 ~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~~--~~~~~~~l~~l~~ 393 (404)
T 1sc6_A 332 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEAD--EDVAEKALQAMKA 393 (404)
T ss_dssp EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECC--HHHHHHHHHHHHT
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCCC--CCCCHHHHHHHhc
Confidence 3455666789999999999999999999999888877766554444432 0123455555554
No 59
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.35 E-value=70 Score=22.39 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 040546 96 LAKTIKTVRELQRTVREQKALCQ 118 (225)
Q Consensus 96 l~~ai~yi~~L~~~~~~l~~~~~ 118 (225)
+..||+-|.-||.++++|+.+..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~ 37 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNN 37 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999986654
No 60
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=24.15 E-value=91 Score=18.77 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 040546 96 LAKTIKTVRELQRTVREQKALC 117 (225)
Q Consensus 96 l~~ai~yi~~L~~~~~~l~~~~ 117 (225)
+.+--.||++|+++..+|+.-+
T Consensus 5 vkelknyiqeleernaelknlk 26 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHH
Confidence 4566789999999988887544
No 61
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=23.63 E-value=2.1e+02 Score=22.27 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=33.5
Q ss_pred CCCeEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEE--EEEe-CCEEEEEEEEEe
Q 040546 140 DRGMLKVTLSC-EDQPELMSDLSRALRSVKGRLVRAE--MVPV-GGRIKCVLWVQG 191 (225)
Q Consensus 140 ~e~~v~I~i~C-~~r~glL~~Il~aL~~l~L~Vv~A~--ist~-~grv~~~~~v~~ 191 (225)
..+.+.|+|.. ++++|.+.+|+.+|.+.++.|.-.. ++.- +|..--.|++..
T Consensus 13 ~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~ 68 (181)
T 3s1t_A 13 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR 68 (181)
T ss_dssp ECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEET
T ss_pred cCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEeh
Confidence 34556666643 6789999999999999988765332 2221 344444555554
No 62
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.92 E-value=61 Score=21.97 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHh
Q 040546 101 KTVRELQRTVREQKA 115 (225)
Q Consensus 101 ~yi~~L~~~~~~l~~ 115 (225)
.||++|+.+|.+|+.
T Consensus 29 ~~i~~LE~~v~~le~ 43 (70)
T 1gd2_E 29 DHLKALETQVVTLKE 43 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 466666666666654
No 63
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=21.69 E-value=75 Score=20.49 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhHHHHHhhCCCCCc
Q 040546 64 EAERRRRLRINDQYDNLRKILPNLVK 89 (225)
Q Consensus 64 ~~Er~RR~~in~~~~~Lr~lvP~~~k 89 (225)
+++|-+|...++-+.+|.++-|+..+
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 46788888999999999999997543
No 64
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=21.33 E-value=2.1e+02 Score=19.89 Aligned_cols=48 Identities=19% Similarity=0.127 Sum_probs=31.8
Q ss_pred EEEEEcCCCCC---hHHHHHHHHHhCCCeEEEEEEEEeCCEEEEEEEEEecc
Q 040546 145 KVTLSCEDQPE---LMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFK 193 (225)
Q Consensus 145 ~I~i~C~~r~g---lL~~Il~aL~~l~L~Vv~A~ist~~grv~~~~~v~~~~ 193 (225)
++++....... ++.++...+ ...+.|+.++|..++|..+-.+++.-.+
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l~G 72 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAY-DIKINILEANIKNTKNGTVGFLVLHIPY 72 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHH-TCCCEEEEEEEEEETTEEEEEEEEEESC
T ss_pred EEEEEECCCccCchHHHHHHHHH-CCcEEEEEEEeEEeCCEeEEEEEEEEeC
Confidence 45554443333 344443333 3567799999999999999888888653
Done!