Query 040548
Match_columns 71
No_of_seqs 106 out of 366
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 15:11:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mit_A RCMTI-V, trypsin inhibi 100.0 2.8E-37 9.6E-42 179.8 7.4 69 2-71 1-69 (69)
2 1vbw_A Trypsin inhibitor BGIT; 100.0 6E-37 2E-41 178.0 7.2 68 3-71 1-68 (68)
3 1dwm_A LUTI, linum usitatissin 100.0 2.2E-36 7.5E-41 176.2 7.7 69 2-71 2-70 (70)
4 1to2_I Chymotrypsin inhibitor 100.0 6E-35 2.1E-39 167.8 6.6 64 8-71 1-64 (64)
5 3rdy_A BWI-1=protease inhibito 100.0 2.8E-34 9.5E-39 171.3 7.3 66 4-70 13-78 (79)
6 2ci2_I Chymotrypsin inhibitor 100.0 3E-34 1E-38 172.2 6.9 64 8-71 20-83 (83)
7 1cse_I Eglin C; complex(serine 100.0 3E-34 1E-38 167.4 6.2 64 8-71 6-70 (70)
8 1cq4_A Protein (serine protein 99.9 1.9E-25 6.4E-30 121.7 4.6 47 8-54 1-47 (47)
9 1hym_A CMTI-V, hydrolyzed cucu 99.8 1.6E-20 5.5E-25 101.4 5.1 43 4-47 3-45 (45)
10 1hym_B CMTI-V, hydrolyzed cucu 99.3 8.4E-13 2.9E-17 63.7 2.7 24 48-71 1-24 (26)
11 3ouv_A Serine/threonine protei 73.1 2.1 7E-05 23.0 1.9 21 10-30 8-28 (71)
12 2kuf_A PKNB, serine/threonine- 67.1 11 0.00036 22.5 4.5 22 9-30 7-28 (139)
13 3da5_A Argonaute; PAZ domain, 54.9 10 0.00035 23.3 2.7 36 1-37 1-36 (128)
14 3ge3_E Toluene-4-monooxygenase 52.1 20 0.00068 21.4 3.7 26 23-48 27-52 (103)
15 2kui_A PKNB, serine/threonine- 49.8 54 0.0018 21.8 6.1 22 10-31 9-30 (275)
16 2yh9_A Small protein A, BAME p 46.2 21 0.00073 19.9 3.1 19 49-67 53-71 (88)
17 3dlm_A Histone-lysine N-methyl 44.1 28 0.00096 23.4 3.8 61 5-66 125-189 (213)
18 2oqc_A Penicillin V acylase; N 43.6 20 0.00069 24.6 3.2 52 18-69 112-176 (327)
19 2kue_A PKNB, serine/threonine- 42.4 14 0.00048 22.0 2.0 22 10-31 76-97 (138)
20 2kud_A PKNB, serine/threonine- 36.4 20 0.00068 21.3 2.0 22 10-31 9-30 (140)
21 1u07_A TONB protein; beta-hair 36.1 29 0.00098 19.1 2.5 15 53-67 28-42 (90)
22 2bjf_A Choloylglycine hydrolas 35.9 35 0.0012 23.4 3.4 52 18-69 114-178 (329)
23 3uv9_A TRIM5alpha, tripartite 35.2 28 0.00095 22.1 2.6 21 45-65 122-143 (186)
24 2km7_A Small protein A; BAME, 34.3 29 0.001 20.0 2.4 18 50-67 68-85 (102)
25 4a7k_A Aldos-2-ulose dehydrata 28.0 53 0.0018 26.5 3.5 36 34-69 470-511 (900)
26 2k9k_A TONB2; metal transport; 26.2 38 0.0013 19.1 1.9 15 53-67 43-57 (106)
27 3py9_A Protein kinase; pasta, 25.4 36 0.0012 23.0 2.0 22 9-30 6-27 (294)
28 2ns0_A Hypothetical protein; r 25.2 66 0.0023 18.6 2.8 42 3-48 24-71 (85)
29 3pjy_A Hypothetical signal pep 25.0 40 0.0014 20.7 1.9 13 55-67 72-84 (136)
30 3m7a_A Uncharacterized protein 24.7 40 0.0014 20.9 1.9 13 55-67 86-98 (140)
31 2jo6_A Nitrite reductase [NAD( 24.6 49 0.0017 18.7 2.2 27 39-65 16-43 (113)
32 2hf0_A BIle salt hydrolase; al 24.5 72 0.0025 21.7 3.4 27 43-69 149-175 (316)
33 3al9_A Plexin-A2; beta-propell 24.4 46 0.0016 24.6 2.5 33 38-70 445-479 (539)
34 1vm9_A Toluene-4-monooxygenase 23.6 81 0.0028 17.7 3.1 28 39-66 11-39 (111)
35 3hbc_A Choloylglycine hydrolas 23.2 1.1E+02 0.0036 21.1 4.0 52 18-69 113-180 (320)
36 2fbe_A Predicted: similar to R 22.7 69 0.0024 20.6 2.9 21 45-65 121-142 (201)
37 3kb5_A Tripartite motif-contai 21.9 50 0.0017 21.0 2.0 18 48-65 130-148 (193)
38 2vok_A 52 kDa RO protein; poly 21.8 74 0.0025 20.2 2.8 20 46-65 120-140 (188)
39 1lr0_A TOLA protein; domain-sw 21.7 67 0.0023 19.2 2.5 18 51-68 53-70 (129)
40 2quy_A Penicillin acylase; aut 21.2 98 0.0034 21.1 3.5 51 18-68 114-177 (335)
No 1
>1mit_A RCMTI-V, trypsin inhibitor V; serine protease inhibitor (RCMTI-V); NMR {Cucurbita maxima} SCOP: d.40.1.1 PDB: 1tin_A
Probab=100.00 E-value=2.8e-37 Score=179.80 Aligned_cols=69 Identities=55% Similarity=1.012 Sum_probs=67.1
Q ss_pred CCCCCCCCCcchhccCCCHHHHHHHHHHhCCCccEEEecCCceecCcccCCeeEEEECCCCcEEecccCC
Q 040548 2 SSSCPAGKGSWPELVGMNGEAAAHIIMAENPKVGATTVDENAIVTADFRCDRVRVFVNDHGIVTRVPRIG 71 (71)
Q Consensus 2 ~~~c~~~k~~wpelVG~~~~~A~~~i~~~~p~~~vrvl~pg~~vTmDy~~~RV~v~vD~~g~V~~vP~iG 71 (71)
.|.|+ +|++||||||+++++|+.+|++|+|++.+|+|+||+++|||||++|||||+|++|+|+++|+||
T Consensus 1 ~~~c~-~K~sWpELVG~~~~~A~~~I~~d~p~v~v~vl~~g~~vT~Dfr~~RV~V~vD~~g~V~~vP~vG 69 (69)
T 1mit_A 1 GSSCP-GKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPPRIG 69 (69)
T ss_dssp CCCCS-SCSCCCCCTTSHHHHHHHHHHHHCTTSEEEEEETTCCCCSSCCTTEEEEEEETTTEEECCSSCC
T ss_pred CCCCC-CcCcCHHHcCccHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEeCCcCC
Confidence 36798 9999999999999999999999999999999999999999999999999999999999999998
No 2
>1vbw_A Trypsin inhibitor BGIT; BGTI, protein binding; HET: TLA; 0.93A {Momordica charantia}
Probab=100.00 E-value=6e-37 Score=177.98 Aligned_cols=68 Identities=54% Similarity=0.955 Sum_probs=66.4
Q ss_pred CCCCCCCCcchhccCCCHHHHHHHHHHhCCCccEEEecCCceecCcccCCeeEEEECCCCcEEecccCC
Q 040548 3 SSCPAGKGSWPELVGMNGEAAAHIIMAENPKVGATTVDENAIVTADFRCDRVRVFVNDHGIVTRVPRIG 71 (71)
Q Consensus 3 ~~c~~~k~~wpelVG~~~~~A~~~i~~~~p~~~vrvl~pg~~vTmDy~~~RV~v~vD~~g~V~~vP~iG 71 (71)
|.|+ +|++||||||+++++|+.+|++|+|++.+|+|++|+++|||||++|||||+|++|+|+++|+||
T Consensus 1 ~~c~-~K~sWpELVG~~~~~A~~~I~~d~p~~~v~vl~~g~~vT~Df~~~RV~v~vD~~g~V~~vP~vG 68 (68)
T 1vbw_A 1 SRCQ-GKSSWPQLVGSTGAAAKAVIERENPRVRAVIIKVGSGATKDFRCDRVRVWVTERGIVARPPTIG 68 (68)
T ss_dssp CCSC-SCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTSCCCCSCCTTEEEEEECTTSBBCSCCEEC
T ss_pred CCCC-CCCcCHHHCCcCHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEecCcCC
Confidence 5698 9999999999999999999999999999999999999999999999999999999999999998
No 3
>1dwm_A LUTI, linum usitatissinum trypsin inhibitor; serine proteinase inhibitor; NMR {Linum usitatissimum} SCOP: d.40.1.1
Probab=100.00 E-value=2.2e-36 Score=176.17 Aligned_cols=69 Identities=55% Similarity=0.939 Sum_probs=66.9
Q ss_pred CCCCCCCCCcchhccCCCHHHHHHHHHHhCCCccEEEecCCceecCcccCCeeEEEECCCCcEEecccCC
Q 040548 2 SSSCPAGKGSWPELVGMNGEAAAHIIMAENPKVGATTVDENAIVTADFRCDRVRVFVNDHGIVTRVPRIG 71 (71)
Q Consensus 2 ~~~c~~~k~~wpelVG~~~~~A~~~i~~~~p~~~vrvl~pg~~vTmDy~~~RV~v~vD~~g~V~~vP~iG 71 (71)
++.|+ +|++||||||+++++|+.+|++|+|++++|+|+||+++|||||++||||++|++|+|+++|+||
T Consensus 2 ~~~c~-~k~sWpelVG~~~~~A~~~i~~e~p~~~vrvl~pg~~vT~Dfr~~RV~v~vD~~g~V~~vP~ig 70 (70)
T 1dwm_A 2 SRRCP-GKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVPHIT 70 (70)
T ss_dssp CCCCS-SCSBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCCSCCTTEEEEEECTTSBBCSCCBBC
T ss_pred CCcCC-ChhHhHHHcCCcHHHHHHHHHHhCCCceEEEecCCCccCCccCCCeEEEEECCCCeEEeCCcCC
Confidence 45698 9999999999999999999999999999999999999999999999999999999999999998
No 4
>1to2_I Chymotrypsin inhibitor 2; serine protease, hydrolase; HET: CIT 15P; 1.30A {Hordeum vulgare subsp} SCOP: d.40.1.1 PDB: 1tm3_I* 1tm5_I* 1tm1_I* 1tm7_I* 1tm4_I* 1y4a_I* 1y4d_I 1tmg_I* 1lw6_I 1y3b_I* 1y1k_I* 1y34_I* 1y48_I* 1y3d_I* 1y3c_I* 1y33_I* 1to1_I* 1y3f_I* 3ci2_A 1coa_I ...
Probab=100.00 E-value=6e-35 Score=167.83 Aligned_cols=64 Identities=39% Similarity=0.716 Sum_probs=62.3
Q ss_pred CCCcchhccCCCHHHHHHHHHHhCCCccEEEecCCceecCcccCCeeEEEECCCCcEEecccCC
Q 040548 8 GKGSWPELVGMNGEAAAHIIMAENPKVGATTVDENAIVTADFRCDRVRVFVNDHGIVTRVPRIG 71 (71)
Q Consensus 8 ~k~~wpelVG~~~~~A~~~i~~~~p~~~vrvl~pg~~vTmDy~~~RV~v~vD~~g~V~~vP~iG 71 (71)
.|++||||||+++++|+.+|++|+|++.+|+|++|+++||||||+|||||+|++|+|+++|+||
T Consensus 1 ~k~sWPELVG~~~~~A~~~I~~d~p~v~v~vl~~g~~vT~Df~~~RV~v~vD~~g~V~~vP~iG 64 (64)
T 1to2_I 1 MKTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTKEYRIDRVRLFVDRLDNIAQVPRVG 64 (64)
T ss_dssp -CCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCEEECBCCTTEEEEEECTTSBBCSCCEEC
T ss_pred CCcCCHhhCCCcHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCeEEecCcCC
Confidence 4899999999999999999999999999999999999999999999999999999999999998
No 5
>3rdy_A BWI-1=protease inhibitor/trypsin inhibitor; serine protease inhibitor, potato inhibitor I, trypsin inhib trypsin, hydrolase inhibitor; 1.84A {Fagopyrum esculentum} SCOP: d.40.1.0 PDB: 3rdz_C
Probab=100.00 E-value=2.8e-34 Score=171.26 Aligned_cols=66 Identities=48% Similarity=0.864 Sum_probs=64.2
Q ss_pred CCCCCCCcchhccCCCHHHHHHHHHHhCCCccEEEecCCceecCcccCCeeEEEECCCCcEEecccC
Q 040548 4 SCPAGKGSWPELVGMNGEAAAHIIMAENPKVGATTVDENAIVTADFRCDRVRVFVNDHGIVTRVPRI 70 (71)
Q Consensus 4 ~c~~~k~~wpelVG~~~~~A~~~i~~~~p~~~vrvl~pg~~vTmDy~~~RV~v~vD~~g~V~~vP~i 70 (71)
+|+ +|++||||||+++++|+++|++|+|+++++||+||+++||||||+|||||+|++|+|+++|+|
T Consensus 13 ~~~-~K~sWPELVG~~~~~A~~~I~~e~P~v~v~Vl~~Gs~VT~Dfr~~RVrV~VD~~g~V~~~P~i 78 (79)
T 3rdy_A 13 QCS-GKQEWPELVGERGSKAAKIIENENEDVRAIVLPEGSAVPRDLRCDRVWVFVDERGVVVDTPVV 78 (79)
T ss_dssp CCC-SCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCSCCCSSEEEEEECTTSBBCSCCBB
T ss_pred cCC-CCCcChHHCCcCHHHHHHHHHHHCCCCceEEeCCCCccCCccCCCEEEEEECCCCeEEeCcee
Confidence 476 999999999999999999999999999999999999999999999999999999999999997
No 6
>2ci2_I Chymotrypsin inhibitor 2; proteinase inhibitor (chymotrypsin); 2.00A {Hordeum vulgare} SCOP: d.40.1.1 PDB: 2sni_I
Probab=100.00 E-value=3e-34 Score=172.21 Aligned_cols=64 Identities=39% Similarity=0.716 Sum_probs=63.3
Q ss_pred CCCcchhccCCCHHHHHHHHHHhCCCccEEEecCCceecCcccCCeeEEEECCCCcEEecccCC
Q 040548 8 GKGSWPELVGMNGEAAAHIIMAENPKVGATTVDENAIVTADFRCDRVRVFVNDHGIVTRVPRIG 71 (71)
Q Consensus 8 ~k~~wpelVG~~~~~A~~~i~~~~p~~~vrvl~pg~~vTmDy~~~RV~v~vD~~g~V~~vP~iG 71 (71)
+|++||||||+++++|+.+|++|+|++.+|||++|+++|||||++|||||+|++|+|+++|+||
T Consensus 20 ~K~sWPELVG~~~~~A~~~I~~d~p~v~vrVl~~G~~VT~Dfr~dRV~V~vD~~g~V~~vP~vG 83 (83)
T 2ci2_I 20 LKTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAEVPRVG 83 (83)
T ss_dssp CCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCSCCCTTEEEEEECTTSBBCSCCEEC
T ss_pred ChhhhHHHcCCcHHHHHHHHHhhCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEeCCcCC
Confidence 8999999999999999999999999999999999999999999999999999999999999998
No 7
>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B
Probab=100.00 E-value=3e-34 Score=167.41 Aligned_cols=64 Identities=34% Similarity=0.540 Sum_probs=61.3
Q ss_pred CCCcchhccCCCHHHHHHHHHHhCCCccEEEecCCceecCcccCCeeEEEEC-CCCcEEecccCC
Q 040548 8 GKGSWPELVGMNGEAAAHIIMAENPKVGATTVDENAIVTADFRCDRVRVFVN-DHGIVTRVPRIG 71 (71)
Q Consensus 8 ~k~~wpelVG~~~~~A~~~i~~~~p~~~vrvl~pg~~vTmDy~~~RV~v~vD-~~g~V~~vP~iG 71 (71)
+|++||||||+++++|+.+|++|+|++.+|+|++|+++||||||+|||||+| ++|+|+++|+||
T Consensus 6 ~k~sWPELVG~~~~~A~~~I~~d~p~~~v~vl~~g~~vT~Df~~~RV~V~vD~~~g~V~~vP~iG 70 (70)
T 1cse_I 6 ELKSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVPHVG 70 (70)
T ss_dssp --CBCGGGTTSBHHHHHHHHHHHCTTSEEEEEETTCCEECCCCTTEEEEEEETTTTEECSCCEEC
T ss_pred CCCcCHHHcCccHHHHHHHHHHHCCCCeEEEecCCCccCCccCCCeEEEEEcCCCCEEEeCCcCC
Confidence 7999999999999999999999999999999999999999999999999999 999999999998
No 8
>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1
Probab=99.91 E-value=1.9e-25 Score=121.66 Aligned_cols=47 Identities=30% Similarity=0.482 Sum_probs=36.6
Q ss_pred CCCcchhccCCCHHHHHHHHHHhCCCccEEEecCCceecCcccCCee
Q 040548 8 GKGSWPELVGMNGEAAAHIIMAENPKVGATTVDENAIVTADFRCDRV 54 (71)
Q Consensus 8 ~k~~wpelVG~~~~~A~~~i~~~~p~~~vrvl~pg~~vTmDy~~~RV 54 (71)
.|++||||||+++++|+.+|++|||++.++||++|+++||||||||+
T Consensus 1 ~K~sWPELVG~~~~~A~~~I~~e~p~v~v~vl~~gs~vT~Df~~~R~ 47 (47)
T 1cq4_A 1 MKTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMGQQQQGM 47 (47)
T ss_dssp -CCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCC---------
T ss_pred CCcCChhhcCccHHHHHHHHHHHCCCCEEEEeCCCCCcCcccCCCCC
Confidence 48999999999999999999999999999999999999999999996
No 9
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=99.82 E-value=1.6e-20 Score=101.42 Aligned_cols=43 Identities=51% Similarity=0.894 Sum_probs=41.5
Q ss_pred CCCCCCCcchhccCCCHHHHHHHHHHhCCCccEEEecCCceecC
Q 040548 4 SCPAGKGSWPELVGMNGEAAAHIIMAENPKVGATTVDENAIVTA 47 (71)
Q Consensus 4 ~c~~~k~~wpelVG~~~~~A~~~i~~~~p~~~vrvl~pg~~vTm 47 (71)
+|+ +|++||||||+++++|+.+|++|||++.+.||++|+++|+
T Consensus 3 ~c~-~K~sWPELVG~~~~~A~~~I~~e~P~v~v~vl~~gs~vT~ 45 (45)
T 1hym_A 3 SCP-GKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTK 45 (45)
T ss_dssp CCC-SCSBCCCCTTSCHHHHHHHHHHHCTTCEEEEEECCSCCCC
T ss_pred CCC-CCCcChhhcCCcHHHHHHHHHHHCCCCeEEEecCCCcCCC
Confidence 398 9999999999999999999999999999999999999996
No 10
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=99.32 E-value=8.4e-13 Score=63.74 Aligned_cols=24 Identities=63% Similarity=1.270 Sum_probs=23.5
Q ss_pred cccCCeeEEEECCCCcEEecccCC
Q 040548 48 DFRCDRVRVFVNDHGIVTRVPRIG 71 (71)
Q Consensus 48 Dy~~~RV~v~vD~~g~V~~vP~iG 71 (71)
||+|+||+||+|++|+|+++|+||
T Consensus 1 Df~~~RVrvfvd~~g~V~~~P~iG 24 (26)
T 1hym_B 1 DFRCNRVRIWVNKRGLVVSPPRIG 24 (26)
T ss_dssp CCCTTEEEEEEETTTEEECCSBCC
T ss_pred CCCCCEEEEEECCCCcEEECCccc
Confidence 899999999999999999999998
No 11
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=73.14 E-value=2.1 Score=23.03 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=17.7
Q ss_pred CcchhccCCCHHHHHHHHHHh
Q 040548 10 GSWPELVGMNGEAAAHIIMAE 30 (71)
Q Consensus 10 ~~wpelVG~~~~~A~~~i~~~ 30 (71)
..-|+|+|++..+|+..++..
T Consensus 8 v~VPdv~G~~~~~A~~~L~~~ 28 (71)
T 3ouv_A 8 KDIPDVAGQTVDVAQKNMNVY 28 (71)
T ss_dssp EECCCCTTCBHHHHHHHHHHT
T ss_pred eECCCcCCCCHHHHHHHHHHC
Confidence 467999999999999887765
No 12
>2kuf_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=67.11 E-value=11 Score=22.53 Aligned_cols=22 Identities=14% Similarity=0.207 Sum_probs=18.2
Q ss_pred CCcchhccCCCHHHHHHHHHHh
Q 040548 9 KGSWPELVGMNGEAAAHIIMAE 30 (71)
Q Consensus 9 k~~wpelVG~~~~~A~~~i~~~ 30 (71)
...-|+|+|++..+|+..++..
T Consensus 7 ~v~vPdv~G~~~~~A~~~L~~~ 28 (139)
T 2kuf_A 7 TKDIPDVAGQTVDVAQKNLNVY 28 (139)
T ss_dssp EEEECCCCSSBHHHHHHHHHHH
T ss_pred ceeCCCcCCCCHHHHHHHHHHC
Confidence 3457899999999999887764
No 13
>3da5_A Argonaute; PAZ domain, RNA binding, SH3-like barrel, RNA binding protein; 1.94A {Thermococcus thioreducens}
Probab=54.93 E-value=10 Score=23.29 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=20.9
Q ss_pred CCCCCCCCCCcchhccCCCHHHHHHHHHHhCCCccEE
Q 040548 1 MSSSCPAGKGSWPELVGMNGEAAAHIIMAENPKVGAT 37 (71)
Q Consensus 1 m~~~c~~~k~~wpelVG~~~~~A~~~i~~~~p~~~vr 37 (71)
|+.+-.+.|+-| ||||++-.+-.+.....+...-.+
T Consensus 1 m~hqi~s~ktlw-elv~~~~~~l~~fl~~h~~~~~l~ 36 (128)
T 3da5_A 1 MSHQIRSKKTLW-ELVGRNKDALRDFLKEHRGTILLR 36 (128)
T ss_dssp -------CCCHH-HHTTSCHHHHHHHHHHTTTTEEEE
T ss_pred CchHHHHHHHHH-HHHCCCHHHHHHHHHHhhcceeHH
Confidence 555554356666 899999988777777776654333
No 14
>3ge3_E Toluene-4-monooxygenase system protein D; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.137.1.1 PDB: 3dhh_E* 3dhi_E 3ge8_E 3i5j_E 3i63_E 3q14_E 3q2a_E* 3q3m_E* 3q3n_E* 3q3o_E* 1g10_A 1g11_A 2bf2_A 3ri7_E 2bf5_A 2bf3_A* 2bf3_B*
Probab=52.11 E-value=20 Score=21.41 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCccEEEecCCceecCc
Q 040548 23 AAHIIMAENPKVGATTVDENAIVTAD 48 (71)
Q Consensus 23 A~~~i~~~~p~~~vrvl~pg~~vTmD 48 (71)
..+.|.++||++.++|...+.++-.|
T Consensus 27 iVeaI~~DNP~~~v~V~d~pa~vrI~ 52 (103)
T 3ge3_E 27 VIETAEIDNPGKEITVEDRRAYVRIA 52 (103)
T ss_dssp HHHHHHHHCTTSCCEEEECSSEEEEE
T ss_pred HHHHHHhHCcCCEEEEeecCCEEEEe
Confidence 35788999999998777666665444
No 15
>2kui_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=49.81 E-value=54 Score=21.77 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=18.6
Q ss_pred CcchhccCCCHHHHHHHHHHhC
Q 040548 10 GSWPELVGMNGEAAAHIIMAEN 31 (71)
Q Consensus 10 ~~wpelVG~~~~~A~~~i~~~~ 31 (71)
..-|+|+|++..+|+..++...
T Consensus 9 v~VP~v~G~~~~~A~~~L~~~g 30 (275)
T 2kui_A 9 VQVPDVRGQSSADAIATLQNRG 30 (275)
T ss_dssp EECCCCTTSCHHHHHHHHHHHT
T ss_pred EECCccCCCCHHHHHHHHHHCC
Confidence 4679999999999998887653
No 16
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=46.18 E-value=21 Score=19.94 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=15.6
Q ss_pred ccCCeeEEEECCCCcEEec
Q 040548 49 FRCDRVRVFVNDHGIVTRV 67 (71)
Q Consensus 49 y~~~RV~v~vD~~g~V~~v 67 (71)
....++.|+.|++|+|+++
T Consensus 53 ~~~~~l~V~Fd~~g~V~~~ 71 (88)
T 2yh9_A 53 VTQQTLTLTFNSSGVLTNI 71 (88)
T ss_dssp SSCCEEEEEECTTSBEEEE
T ss_pred cEEEEEEEEEcCCCeEEEE
Confidence 3367799999999999886
No 17
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=44.12 E-value=28 Score=23.40 Aligned_cols=61 Identities=11% Similarity=0.279 Sum_probs=41.2
Q ss_pred CCCCCCcchhccCCCHHH-HHHHHHHhCCCccEEEecCCceecCcccCC--eeEEE-ECCCCcEEe
Q 040548 5 CPAGKGSWPELVGMNGEA-AAHIIMAENPKVGATTVDENAIVTADFRCD--RVRVF-VNDHGIVTR 66 (71)
Q Consensus 5 c~~~k~~wpelVG~~~~~-A~~~i~~~~p~~~vrvl~pg~~vTmDy~~~--RV~v~-vD~~g~V~~ 66 (71)
|.+.+.-|-++=-.+-.+ -+.. .++.|.-...-+++|+.+.+|.+.. +.+|. +|.+-..+.
T Consensus 125 c~~s~~vW~di~~~~~r~FIk~Y-L~~yP~rpmv~~~~GQ~i~~E~~g~w~~~~V~~vD~SLv~v~ 189 (213)
T 3dlm_A 125 CRPLKKTWEDIEDISCRDFIEEY-VTAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRIL 189 (213)
T ss_dssp SSCCSSGGGGCSCHHHHHHHHHH-HHHTTCCCCCCCCTTCEEEEEETTEEEEEEEEEEETTEEEEE
T ss_pred EEcccchhhhcCcchhHHHHHHH-HHhCCCCceEEcCCCCEEEEEecCcEEEEEEEEEcceeEEEE
Confidence 666788888875433222 2333 4667776677889999999999998 66664 776544443
No 18
>2oqc_A Penicillin V acylase; NTN-hydrolase, conjugated bIle acid HY choloylglycine hydrolase, hydrolase; 2.50A {Bacillus subtilis}
Probab=43.65 E-value=20 Score=24.61 Aligned_cols=52 Identities=19% Similarity=0.200 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHhC------------CCccEEEe-cCCceecCcccCCeeEEEECCCCcEEeccc
Q 040548 18 MNGEAAAHIIMAEN------------PKVGATTV-DENAIVTADFRCDRVRVFVNDHGIVTRVPR 69 (71)
Q Consensus 18 ~~~~~A~~~i~~~~------------p~~~vrvl-~pg~~vTmDy~~~RV~v~vD~~g~V~~vP~ 69 (71)
.+.+||++.+++-. +.++..+- +-|..+..+|..+++.|+-++-++.++-|.
T Consensus 112 ~tV~Ea~~~L~~~~i~~~~~~~~~~~~~~H~~i~D~sG~s~viE~~~g~l~i~~n~~~V~TN~P~ 176 (327)
T 2oqc_A 112 QSLEDVKEKIRSLTIVEKKLDLLDTVLPLHWILSDRTGRNLTIEPRADGLKVYDNQPGVMTNSPD 176 (327)
T ss_dssp CSHHHHHHHGGGEEEBCCCBGGGTBCCCEEEEEECTTSCEEEEEEETTEEEEEECSSCEECSSSC
T ss_pred CCHHHHHHHHHcCceecccccCcCCccceEEEEEcCCCCEEEEEEecCCcEEEeCCceEEcCCCC
Confidence 45667777665532 22333333 347899999999999999887788887764
No 19
>2kue_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=42.41 E-value=14 Score=22.03 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=18.5
Q ss_pred CcchhccCCCHHHHHHHHHHhC
Q 040548 10 GSWPELVGMNGEAAAHIIMAEN 31 (71)
Q Consensus 10 ~~wpelVG~~~~~A~~~i~~~~ 31 (71)
-.-|+|+|++..+|+..++...
T Consensus 76 v~vPd~~G~~~~~A~~~L~~~G 97 (138)
T 2kue_A 76 KDIPDVAGQTVDVAQKNLNVYG 97 (138)
T ss_dssp EECCCCTTSBHHHHHHHHHHHS
T ss_pred eeCCccCCCCHHHHHHHHHHCC
Confidence 4579999999999998887764
No 20
>2kud_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=36.39 E-value=20 Score=21.34 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=18.5
Q ss_pred CcchhccCCCHHHHHHHHHHhC
Q 040548 10 GSWPELVGMNGEAAAHIIMAEN 31 (71)
Q Consensus 10 ~~wpelVG~~~~~A~~~i~~~~ 31 (71)
..-|+|+|++..+|+..++...
T Consensus 9 v~vPdv~G~~~~~A~~~L~~~g 30 (140)
T 2kud_A 9 VQVPDVRGQSSADAIATLQNRG 30 (140)
T ss_dssp ECCCCCTTSBHHHHHHHHHHHT
T ss_pred eECCccCCCCHHHHHHHHHHCC
Confidence 5689999999999998877653
No 21
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=36.10 E-value=29 Score=19.07 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=11.6
Q ss_pred eeEEEECCCCcEEec
Q 040548 53 RVRVFVNDHGIVTRV 67 (71)
Q Consensus 53 RV~v~vD~~g~V~~v 67 (71)
.|.+.+|.+|.|..+
T Consensus 28 ~v~~~i~~~G~v~~~ 42 (90)
T 1u07_A 28 KVKFDVTPDGRVDNV 42 (90)
T ss_dssp EEEEEECTTSCEEEE
T ss_pred EEEEEECCCCCEEEE
Confidence 366778999998875
No 22
>2bjf_A Choloylglycine hydrolase; amidohydrolase, NTN-hydrolase, bIle acids, BSH; HET: DXC; 1.67A {Clostridium perfringens} PDB: 2bjg_A 2rlc_A* 2rf8_A 2rg2_A
Probab=35.91 E-value=35 Score=23.44 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHhC------------CCccEEEe-cCCceecCcccCCeeEEEECCCCcEEeccc
Q 040548 18 MNGEAAAHIIMAEN------------PKVGATTV-DENAIVTADFRCDRVRVFVNDHGIVTRVPR 69 (71)
Q Consensus 18 ~~~~~A~~~i~~~~------------p~~~vrvl-~pg~~vTmDy~~~RV~v~vD~~g~V~~vP~ 69 (71)
.+.+||++.+++-. +.++..+- +-|..+..+|..+++.|+-++-+++++-|.
T Consensus 114 ~tV~Ea~~~l~~~~i~~~~~~~~~~~~~~H~~i~D~sG~s~viE~~~g~l~i~~n~~~V~TN~P~ 178 (329)
T 2bjf_A 114 SSVEEVKEALKNANIVDIPISENIPNTTLHWMISDITGKSIVVEQTKEKLNVFDNNIGVLTNSPT 178 (329)
T ss_dssp SSHHHHHHHHTTEEEECCCSSTTCCCCCEEEEEECTTSCEEEEEECSSCEEEEECSSCEECSSSC
T ss_pred CCHHHHHHHHHhCceecccccCcCCCcceEEEEEcCCCCEEEEEEecCCcEEEeCCceEEcCCCC
Confidence 45667776665432 12232233 347889999999999999887788887764
No 23
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=35.23 E-value=28 Score=22.14 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=15.0
Q ss_pred ecCcccCCeeEEEEC-CCCcEE
Q 040548 45 VTADFRCDRVRVFVN-DHGIVT 65 (71)
Q Consensus 45 vTmDy~~~RV~v~vD-~~g~V~ 65 (71)
.++.-.+.||-|++| +.|.|+
T Consensus 122 l~~~~~p~rVGVfLDye~G~lS 143 (186)
T 3uv9_A 122 LSVIICPDRVGVFVDYEACTVS 143 (186)
T ss_dssp CCCSSCCSEEEEEEETTTTEEE
T ss_pred ccccccCCEEEEEeecCCCEEE
Confidence 445566789999998 556665
No 24
>2km7_A Small protein A; BAME, SMPA, BAM complex, OMP85, YAET, cell membrane, cell OU membrane, lipoprotein, membrane, palmitate, membrane protei; NMR {Escherichia coli} PDB: 2kxx_A
Probab=34.26 E-value=29 Score=20.05 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=15.1
Q ss_pred cCCeeEEEECCCCcEEec
Q 040548 50 RCDRVRVFVNDHGIVTRV 67 (71)
Q Consensus 50 ~~~RV~v~vD~~g~V~~v 67 (71)
-..++.|+.|++|+|+++
T Consensus 68 ~~~~l~V~Fd~~g~V~~i 85 (102)
T 2km7_A 68 TQQTLTLTFNSSGVLTNI 85 (102)
T ss_dssp CCCCEEEEEETTTEEEEE
T ss_pred EEEEEEEEECCCCeEEEE
Confidence 356799999999999886
No 25
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*
Probab=28.04 E-value=53 Score=26.50 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=30.1
Q ss_pred ccEEEecCCceecCcccCCeeEEE------ECCCCcEEeccc
Q 040548 34 VGATTVDENAIVTADFRCDRVRVF------VNDHGIVTRVPR 69 (71)
Q Consensus 34 ~~vrvl~pg~~vTmDy~~~RV~v~------vD~~g~V~~vP~ 69 (71)
+++.|+||+..+-.+-|.+-|-|. .|++++|.|+|-
T Consensus 470 ~~~~v~p~~~~~~~~~~~~g~kv~~g~~~~~~~~~~~~~~p~ 511 (900)
T 4a7k_A 470 LTLVVLPPFARLDVERNVSGVKVMAGTVCWADENGKHERVPA 511 (900)
T ss_dssp EEEEEECTTCEEECCTTTCEEEEEEEEEEEEETTEEEEECSC
T ss_pred EEEEEcCCccccccccccCceEEEEEEeeeccCCCcEEeeEC
Confidence 467899999999999888888875 347899999985
No 26
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=26.24 E-value=38 Score=19.07 Aligned_cols=15 Identities=7% Similarity=0.262 Sum_probs=11.3
Q ss_pred eeEEEECCCCcEEec
Q 040548 53 RVRVFVNDHGIVTRV 67 (71)
Q Consensus 53 RV~v~vD~~g~V~~v 67 (71)
.|.+.+|.+|.|..+
T Consensus 43 ~v~f~I~~~G~v~~~ 57 (106)
T 2k9k_A 43 TLSFTIDTTGKAVDI 57 (106)
T ss_dssp EEEEEEETTTEEEEE
T ss_pred EEEEEECCCCcEEEE
Confidence 456678999988764
No 27
>3py9_A Protein kinase; pasta, muropeptide binding, phosphorylation, membran transferase; 2.20A {Staphylococcus aureus subsp} PDB: 3m9g_A
Probab=25.45 E-value=36 Score=23.02 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=17.4
Q ss_pred CCcchhccCCCHHHHHHHHHHh
Q 040548 9 KGSWPELVGMNGEAAAHIIMAE 30 (71)
Q Consensus 9 k~~wpelVG~~~~~A~~~i~~~ 30 (71)
...-|+|+|++..+|+..++..
T Consensus 6 ~v~VPdv~G~t~~eA~~~L~~~ 27 (294)
T 3py9_A 6 YEETPDVIGKSVKEAEQIFNKN 27 (294)
T ss_dssp --CCCCCTTCCHHHHHHHHHHT
T ss_pred eeECCCcCCCCHHHHHHHHHHC
Confidence 4567999999999999887665
No 28
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=25.18 E-value=66 Score=18.56 Aligned_cols=42 Identities=24% Similarity=0.429 Sum_probs=27.9
Q ss_pred CCCCC------CCCcchhccCCCHHHHHHHHHHhCCCccEEEecCCceecCc
Q 040548 3 SSCPA------GKGSWPELVGMNGEAAAHIIMAENPKVGATTVDENAIVTAD 48 (71)
Q Consensus 3 ~~c~~------~k~~wpelVG~~~~~A~~~i~~~~p~~~vrvl~pg~~vTmD 48 (71)
+.||+ +...|.+|...--..|... .++ + .+.|+..|.+|..+
T Consensus 24 TicPSEvARal~~~~Wr~lM~~vR~~A~~L-a~~--G-~v~I~qkG~pVdp~ 71 (85)
T 2ns0_A 24 SICPSDVARAVAPDDWRPLMEPVREAAGRL-ADA--G-EVEVTQKGAVVDPR 71 (85)
T ss_dssp CBCHHHHHHHHCTTSCGGGHHHHHHHHHHH-HHT--T-SEEEEETTEECCTT
T ss_pred CcCHHHHHHHhCchhHHHHhHHHHHHHHHH-HHC--C-cEEEEECCEEcCcc
Confidence 55776 5677999988655544432 222 2 58899999988654
No 29
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=24.97 E-value=40 Score=20.71 Aligned_cols=13 Identities=15% Similarity=0.580 Sum_probs=11.3
Q ss_pred EEEECCCCcEEec
Q 040548 55 RVFVNDHGIVTRV 67 (71)
Q Consensus 55 ~v~vD~~g~V~~v 67 (71)
-+|+|++|+|+.+
T Consensus 72 iiFld~~g~Vv~i 84 (136)
T 3pjy_A 72 MLFIASDGTIRTI 84 (136)
T ss_dssp EEEECTTSBEEEE
T ss_pred EEEECCCCEEEEE
Confidence 5689999999886
No 30
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=24.68 E-value=40 Score=20.88 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=11.0
Q ss_pred EEEECCCCcEEec
Q 040548 55 RVFVNDHGIVTRV 67 (71)
Q Consensus 55 ~v~vD~~g~V~~v 67 (71)
-+|+|.+|+|+.+
T Consensus 86 iiFid~dg~Vv~i 98 (140)
T 3m7a_A 86 IIFVGLDRRVMNI 98 (140)
T ss_dssp EEEECTTSBEEEE
T ss_pred EEEECCCCeEEEE
Confidence 5689999999875
No 31
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=24.62 E-value=49 Score=18.72 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=16.3
Q ss_pred ecCCceecCcccCCeeEEEECCCC-cEE
Q 040548 39 VDENAIVTADFRCDRVRVFVNDHG-IVT 65 (71)
Q Consensus 39 l~pg~~vTmDy~~~RV~v~vD~~g-~V~ 65 (71)
|++|+.++.++....+-|+-+++| .+.
T Consensus 16 l~~g~~~~~~~~g~~i~v~r~~~g~~~~ 43 (113)
T 2jo6_A 16 ILPETGVCALLGDEQVAIFRPYHSDQVF 43 (113)
T ss_dssp SCTTEEEEEEETTEEEEEEECSSSSCCE
T ss_pred CCCCCeEEEEECCEEEEEEEECCCCEEE
Confidence 345666666665666777766555 344
No 32
>2hf0_A BIle salt hydrolase; alpha, beta; 2.30A {Bifidobacterium longum} PDB: 2hez_A
Probab=24.50 E-value=72 Score=21.72 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=22.1
Q ss_pred ceecCcccCCeeEEEECCCCcEEeccc
Q 040548 43 AIVTADFRCDRVRVFVNDHGIVTRVPR 69 (71)
Q Consensus 43 ~~vTmDy~~~RV~v~vD~~g~V~~vP~ 69 (71)
..+..+|..+.+.|+-++-++.++-|.
T Consensus 149 ~s~viE~~~g~l~i~~n~~~V~TN~P~ 175 (316)
T 2hf0_A 149 RSIVVEQMADGMHVHHDDVDVLTNQPT 175 (316)
T ss_dssp CEEEEEEETTEEEEEECTTCEECSSSC
T ss_pred CeEEEEEcCCccEEEeCCcEEEecCCC
Confidence 677788999999999887788887764
No 33
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=24.42 E-value=46 Score=24.64 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=26.9
Q ss_pred EecCCcee--cCcccCCeeEEEECCCCcEEecccC
Q 040548 38 TVDENAIV--TADFRCDRVRVFVNDHGIVTRVPRI 70 (71)
Q Consensus 38 vl~pg~~v--TmDy~~~RV~v~vD~~g~V~~vP~i 70 (71)
+.+.|+++ .|-|..++-.||+-.+..|+++|.-
T Consensus 445 v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kvpl~ 479 (539)
T 3al9_A 445 VFKDGSPILRDMAFSINQLYLYVMSERQVTRVPVE 479 (539)
T ss_dssp CCTTCCCCCSCCEECTTSSEEEEECSSEEEEEESC
T ss_pred eecCCCccccceEEccCCCeEEEEeccccceeehh
Confidence 33448887 6888889999999999999999963
No 34
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=23.59 E-value=81 Score=17.68 Aligned_cols=28 Identities=11% Similarity=-0.009 Sum_probs=16.9
Q ss_pred ecCCceecCcc-cCCeeEEEECCCCcEEe
Q 040548 39 VDENAIVTADF-RCDRVRVFVNDHGIVTR 66 (71)
Q Consensus 39 l~pg~~vTmDy-~~~RV~v~vD~~g~V~~ 66 (71)
|++|..++.++ ....+-|+-+++|.+.-
T Consensus 11 l~~g~~~~~~~~~g~~v~v~r~~~g~~~A 39 (111)
T 1vm9_A 11 IWVGEMETFETSDGTEVLIVNSEEHGVKA 39 (111)
T ss_dssp SCTTCEEEEECTTCCEEEEEEETTTEEEE
T ss_pred CCCCCeEEEEEcCCCEEEEEEeCCCeEEE
Confidence 35566666665 56667777665665543
No 35
>3hbc_A Choloylglycine hydrolase; alpha-beta sandwich, structural genomics, PSI-2, protein STR initiative; HET: MSE; 2.27A {Bacteroides thetaiotaomicron}
Probab=23.24 E-value=1.1e+02 Score=21.09 Aligned_cols=52 Identities=10% Similarity=0.195 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHhC--------------CCccEEEe-cCCceecCcccCCeeEEEEC-CCCcEEeccc
Q 040548 18 MNGEAAAHIIMAEN--------------PKVGATTV-DENAIVTADFRCDRVRVFVN-DHGIVTRVPR 69 (71)
Q Consensus 18 ~~~~~A~~~i~~~~--------------p~~~vrvl-~pg~~vTmDy~~~RV~v~vD-~~g~V~~vP~ 69 (71)
.+.+||++.+++.. +.++..+- +.|..+..+|..+.+.|+-+ +-++.++-|.
T Consensus 113 ~TV~Ea~~~L~~~~i~iv~~~~~~~~~~~~~H~~i~D~sG~s~viE~~~g~~~i~~~~~~~V~TN~P~ 180 (320)
T 3hbc_A 113 ATVREAVDEMKKETFRIDAPRMPNGGPESTLHMAITDETGNTAVIEYLDGKLSIHEGKEYQVMTNSPR 180 (320)
T ss_dssp SSHHHHHHHHTTCCSEEECCCC------CCEEEEEECTTCCEEEEEEETTEEEEEESTTCCEECSSSC
T ss_pred CCHHHHHHHHHhCCceEeecccCCCCCcccEEEEEEeCCCCEEEEEEeCCeeEEEECCCeEEECCCCC
Confidence 45677777766621 22333333 45789999999999999874 5577777664
No 36
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=22.66 E-value=69 Score=20.59 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=15.0
Q ss_pred ecCcccCCeeEEEEC-CCCcEE
Q 040548 45 VTADFRCDRVRVFVN-DHGIVT 65 (71)
Q Consensus 45 vTmDy~~~RV~v~vD-~~g~V~ 65 (71)
..+.-.+.||-|++| +.|.|+
T Consensus 121 l~~~~~~~rVGVfLDye~G~lS 142 (201)
T 2fbe_A 121 LWVSPQLHRVGIFLDVGMRSIA 142 (201)
T ss_dssp ECCCTTCCEEEEEEETTTTEEE
T ss_pred CccCCCCCEEEEEEEcCCCEEE
Confidence 344556789999999 567765
No 37
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=21.90 E-value=50 Score=20.98 Aligned_cols=18 Identities=17% Similarity=0.575 Sum_probs=13.5
Q ss_pred cccCCeeEEEEC-CCCcEE
Q 040548 48 DFRCDRVRVFVN-DHGIVT 65 (71)
Q Consensus 48 Dy~~~RV~v~vD-~~g~V~ 65 (71)
.-.+.||-||+| +.|.|+
T Consensus 130 ~~~~~rVGVfLDye~G~lS 148 (193)
T 3kb5_A 130 ERRPTRIGLYLSFGDGVLS 148 (193)
T ss_dssp SSCCSEEEEEEETTTTEEE
T ss_pred CCCCCEEEEEEEcCCCEEE
Confidence 445789999999 567765
No 38
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=21.81 E-value=74 Score=20.22 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=14.4
Q ss_pred cCcccCCeeEEEEC-CCCcEE
Q 040548 46 TADFRCDRVRVFVN-DHGIVT 65 (71)
Q Consensus 46 TmDy~~~RV~v~vD-~~g~V~ 65 (71)
.+.-.+.||-|++| +.|.|+
T Consensus 120 ~~~~~~~rVGVfLDye~G~lS 140 (188)
T 2vok_A 120 HIQVPPCQIGIFVDYEAGVVS 140 (188)
T ss_dssp CCSSCCSEEEEEEETTTTEEE
T ss_pred ecCCCCCEEEEEEEcCCCEEE
Confidence 33445889999999 567765
No 39
>1lr0_A TOLA protein; domain-swapping, TONB, protein transport; 1.91A {Pseudomonas aeruginosa} SCOP: d.212.1.1
Probab=21.69 E-value=67 Score=19.23 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=14.7
Q ss_pred CCeeEEEECCCCcEEecc
Q 040548 51 CDRVRVFVNDHGIVTRVP 68 (71)
Q Consensus 51 ~~RV~v~vD~~g~V~~vP 68 (71)
.-.|+|.+|.+|.|..+-
T Consensus 53 ~~~V~v~l~~dG~v~~v~ 70 (129)
T 1lr0_A 53 SVEVLIEMLPDGTITNAS 70 (129)
T ss_dssp CEEEEEEECTTSBEEEEE
T ss_pred EEEEEEEECCCCCEEEEE
Confidence 357889999999998863
No 40
>2quy_A Penicillin acylase; autoproteolysis, NTN, OXY-anion HOLE, antibiotic resistance, hydrolase, zymogen; 1.70A {Bacillus sphaericus} PDB: 3pva_A 2iwm_A 3mji_A 2z71_A* 2pva_A
Probab=21.21 E-value=98 Score=21.08 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHhC------------CCccEEEe-cCCceecCcccCCeeEEEECCCCcEEecc
Q 040548 18 MNGEAAAHIIMAEN------------PKVGATTV-DENAIVTADFRCDRVRVFVNDHGIVTRVP 68 (71)
Q Consensus 18 ~~~~~A~~~i~~~~------------p~~~vrvl-~pg~~vTmDy~~~RV~v~vD~~g~V~~vP 68 (71)
.+.+||++.+++-. +..+..+- +.|..+..+|..+++.|+-++.++.++-|
T Consensus 114 ~tV~EA~~~L~~~~i~~~~~~~~~~~~~~H~~i~D~sG~s~viE~~~g~~~i~~~~~~V~TN~P 177 (335)
T 2quy_A 114 VTVDDVIEKLTSYTLLNEANIILGFAPPLHYTFTDASGESIVIEPDKTGITIHRKTIGVMTASP 177 (335)
T ss_dssp CSHHHHHHHHHTEEEBCCCCTTTSSCCCEEEEEECTTCCEEEEEEETTEEEEECSCCSEECSSS
T ss_pred CCHHHHHHHHhhCeeeccccCCCCCCcceEEEEEcCCCCEEEEEEeCCccEEEeCCcEEEcCCC
Confidence 56777877766531 11222233 35789999999999999887777776655
Done!