BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040555
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X2N|A Chain A, Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Pknox1
Length = 73
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 40/52 (76%)
Query: 122 LPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRL 173
LP HA V+++WL+++ HPYPT+ +K+ +A QT L+ QV+NWFINAR R+
Sbjct: 14 LPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRI 65
>pdb|3K2A|A Chain A, Crystal Structure Of The Homeobox Domain Of Human Homeobox
Protein Meis2
pdb|3K2A|B Chain B, Crystal Structure Of The Homeobox Domain Of Human Homeobox
Protein Meis2
Length = 67
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 122 LPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVEE 180
P A + + WL+++ HPYP++ K+ LA+ TGL+ QV+NWFINAR R+ +P +++
Sbjct: 5 FPKVATNIXRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPXIDQ 63
>pdb|2LK2|A Chain A, Solution Nmr Structure Of Homeobox Domain (171-248) Of
Human Homeobox Protein Tgif1, Northeast Structural
Genomics Consortium Target Hr4411b
Length = 89
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 122 LPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVEE 180
LP +V +L+ WLYE+ + YP++ +K +L++QT LS QV NWFINAR RL M+ +
Sbjct: 12 LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70
>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Tgif2lx
Length = 83
Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 43/59 (72%)
Query: 122 LPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVEE 180
LP +V +L+ W+Y++ YP++ +KQ+L+++T LS Q+SNWFINAR R+ M+++
Sbjct: 14 LPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72
>pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX
Length = 87
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 117 RSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176
R +R A +L + Y + +PYP++ K+ LAK+ G++ +QVSNWF N R+R K
Sbjct: 3 RKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62
Query: 177 MVEEVHMLEIGQTQTTSEATN 197
+ + I +T ATN
Sbjct: 63 IGKFQEEANIYAAKTAVTATN 83
>pdb|1LFU|P Chain P, Nmr Solution Stucture Of The Extended Pbx Homeodomain
Bound To Dna
Length = 82
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 117 RSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175
R +R A +L + Y + +PYP++ K+ LAK++G++ +QVSNWF N R+R K
Sbjct: 4 RKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYKK 62
>pdb|1DU6|A Chain A, Solution Structure Of The Truncated Pbx Homeodomain
Length = 64
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 120 RALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175
R + A +L + Y + +PYP++ K+ LAK+ G++ +QVSNWF N R+R K
Sbjct: 8 RHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63
>pdb|1PUF|B Chain B, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To
Dna
Length = 73
Score = 52.0 bits (123), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 117 RSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175
R +R A +L + Y + +PYP++ K+ LAK+ G++ +QVSNWF N R+R K
Sbjct: 3 RKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
>pdb|1B8I|B Chain B, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX
pdb|2R5Y|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd
Site
pdb|2R5Z|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A DNA SEQUENCE
Derived From The Fkh Gene
Length = 63
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 117 RSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175
R +R A +L + Y + +PYP++ K+ LA++ G++ +QVSNWF N R+R K
Sbjct: 3 RKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKK 61
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 128 AVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVR 172
VL+ W N PYP+ +K+ LA+ TGL+ QVSNWF N R R
Sbjct: 507 GVLREWYAHN---PYPSPREKRELAEATGLTTTQVSNWFKNRRQR 548
>pdb|1K61|A Chain A, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|B Chain B, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|C Chain C, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|D Chain D, Matalpha2 Homeodomain Bound To Dna
Length = 60
Score = 35.0 bits (79), Expect = 0.055, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 127 VAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINAR 170
V +L++W +N +PY + L K T LS+ Q+ NW N R
Sbjct: 10 VRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRR 53
>pdb|1APL|C Chain C, Crystal Structure Of A Mat-Alpha2 Homeodomain-Operator
Complex Suggests A General Model For Homeodomain-Dna
Interactions
pdb|1APL|D Chain D, Crystal Structure Of A Mat-Alpha2 Homeodomain-Operator
Complex Suggests A General Model For Homeodomain-Dna
Interactions
pdb|1YRN|B Chain B, Crystal Structure Of The Mata1MATALPHA2 HOMEODOMAIN
Heterodimer Bound To Dna
pdb|1AKH|B Chain B, Mat A1ALPHA2DNA TERNARY COMPLEX
Length = 83
Score = 34.7 bits (78), Expect = 0.063, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 127 VAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINAR 170
V +L++W +N +PY + L K T LS+ Q+ NW N R
Sbjct: 14 VRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRR 57
>pdb|1MNM|C Chain C, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
pdb|1MNM|D Chain D, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
Length = 87
Score = 34.7 bits (78), Expect = 0.071, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 127 VAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINAR 170
V +L++W +N +PY + L K T LS+ Q+ NW N R
Sbjct: 39 VRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRR 82
>pdb|1LE8|B Chain B, Crystal Structure Of The Mata1MATALPHA2-3a Heterodimer
Bound To Dna Complex
Length = 83
Score = 33.1 bits (74), Expect = 0.19, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 127 VAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVR 172
V +L++W +N +PY + L K T LS+ Q+ NW R +
Sbjct: 14 VRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAK 59
>pdb|2HOS|A Chain A, Phage-selected Homeodomain Bound To Unmodified Dna
pdb|2HOS|B Chain B, Phage-selected Homeodomain Bound To Unmodified Dna
pdb|2HOT|A Chain A, Phage Selected Homeodomain Bound To Modified Dna
pdb|2HOT|B Chain B, Phage Selected Homeodomain Bound To Modified Dna
Length = 63
Score = 32.3 bits (72), Expect = 0.33, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 117 RSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175
R + A +A LK EN Y T+ +Q L+ + GL++ QV WF N R ++ K
Sbjct: 6 RPRTAFSSEQLARLKREFNEN---RYLTERRRQQLSSELGLNEAQVKGWFKNMRAKIKK 61
>pdb|1P7I|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52a
Length = 59
Score = 32.0 bits (71), Expect = 0.43, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 117 RSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175
R + A +A LK EN Y T+ +Q L+ + GL++ Q+ WF NAR ++ K
Sbjct: 3 RPRTAFSSEQLARLKREFNEN---RYLTERRRQQLSSELGLNEAQIKIWFQNARAKIKK 58
>pdb|2DMQ|A Chain A, Solution Structure Of The Homeobox Domain Of LimHOMEOBOX
Protein Lhx9
Length = 80
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 117 RSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176
R + + H + +K++ N P D + LA++TGL+K + WF NAR + +
Sbjct: 9 RMRTSFKHHQLRTMKSYFAINH---NPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65
Query: 177 MVEE 180
++ +
Sbjct: 66 LLRQ 69
>pdb|1DU0|A Chain A, Engrailed Homeodomain Q50a Variant Dna Complex
pdb|1DU0|B Chain B, Engrailed Homeodomain Q50a Variant Dna Complex
Length = 57
Score = 31.2 bits (69), Expect = 0.82, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 117 RSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175
R + A +A LK EN Y T+ +Q L+ + GL++ Q+ WF N R ++ K
Sbjct: 1 RPRTAFSSEQLARLKREFNEN---RYLTERRRQQLSSELGLNEAQIKIWFANKRAKIKK 56
>pdb|2VXR|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Serotype G
Binding Domain
Length = 482
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 3 IEASYVSSKLAWHELQLLALKVYW--------KYKLYCQQMQSVVASFETVAGLGHAAPY 54
+ A+ VSS L W + LK +W +Y L+ Q MQ++ + + A +G AP
Sbjct: 257 LNATEVSS-LYWIQSSTNTLKDFWGNPLRYDTQYYLFNQGMQNIYIKYFSKASMGETAPR 315
Query: 55 ISFAFKAIS 63
+F AI+
Sbjct: 316 TNFNNAAIN 324
>pdb|2HDD|A Chain A, Engrailed Homeodomain Q50k Variant Dna Complex
pdb|2HDD|B Chain B, Engrailed Homeodomain Q50k Variant Dna Complex
Length = 61
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 117 RSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175
R + A +A LK EN Y T+ +Q L+ + GL++ Q+ WF N R ++ K
Sbjct: 5 RPRTAFSSEQLARLKREFNEN---RYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60
>pdb|1HDD|C Chain C, Crystal Structure Of An Engrailed Homeodomain-Dna Complex
At 2.8 Angstroms Resolution: A Framework For
Understanding Homeodomain-Dna Interactions
pdb|1HDD|D Chain D, Crystal Structure Of An Engrailed Homeodomain-Dna Complex
At 2.8 Angstroms Resolution: A Framework For
Understanding Homeodomain-Dna Interactions
pdb|2JWT|A Chain A, Solution Structure Of Engrailed Homeodomain Wt
Length = 61
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 117 RSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175
R + A +A LK EN Y T+ +Q L+ + GL++ Q+ WF N R ++ K
Sbjct: 5 RPRTAFSSEQLARLKREFNEN---RYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIKK 60
>pdb|3HDD|A Chain A, Engrailed Homeodomain Dna Complex
pdb|3HDD|B Chain B, Engrailed Homeodomain Dna Complex
Length = 60
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 117 RSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175
R + A +A LK EN Y T+ +Q L+ + GL++ Q+ WF N R ++ K
Sbjct: 3 RPRTAFSSEQLARLKREFNEN---RYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIKK 58
>pdb|1P7J|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52e
Length = 59
Score = 30.0 bits (66), Expect = 1.6, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 117 RSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175
R + A +A LK EN Y T+ +Q L+ + GL++ Q+ WF N R ++ K
Sbjct: 3 RPRTAFSSEQLARLKREFNEN---RYLTERRRQQLSSELGLNEAQIKIWFQNERAKIKK 58
>pdb|1ENH|A Chain A, Structural Studies Of The Engrailed Homeodomain
Length = 54
Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 117 RSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRL 173
R + A +A LK EN Y T+ +Q L+ + GL++ Q+ WF N R ++
Sbjct: 1 RPRTAFSSEQLARLKREFNEN---RYLTERRRQQLSSELGLNEAQIKIWFQNKRAKI 54
>pdb|1MH3|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form I
pdb|1MH4|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form Ii
Length = 421
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 147 DKQILAKQTGLSKNQVSNWFINARVR 172
+K+ +AK+ G++ QV WFIN R+R
Sbjct: 394 EKEEVAKKCGITPLQVRVWFINKRMR 419
>pdb|3RNQ|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 201
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 159 KNQVSNWFINARVRLWKPMVEEVHMLEIGQTQTTSEATNSNFGVPSDHLNTLFPEKLYQA 218
K + S I+ R+ L P EV + + +E + N VP++ + PE LYQ
Sbjct: 99 KVKASYMRIDTRI-LEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQV 157
Query: 219 TQILQAEHVPTKH 231
T +L+ + P+++
Sbjct: 158 TSVLRLKPQPSRN 170
>pdb|2LY9|A Chain A, Solution Nmr Structure Of Homeobox 2 Domain From Human
Zhx1 Repressor, Northeast Structural Genomics Consortium
(Nesg) Target Hr7907f
Length = 74
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 142 YPTDSDKQILAKQTGLSKNQVSNWFINAR 170
+P DS+ L K TGL+K ++ WF + R
Sbjct: 30 FPHDSEIIRLMKITGLTKGEIKKWFSDTR 58
>pdb|3BP5|B Chain B, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
pdb|3BP6|B Chain B, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
Length = 202
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 159 KNQVSNWFINARVRLWKPMVEEVHMLEIGQTQTTSEATNSNFGVPSDHLNTLFPEKLYQA 218
K + S I+ R+ L P EV + + +E + N VP++ + PE LYQ
Sbjct: 100 KVKASYMRIDTRI-LEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQV 158
Query: 219 TQILQAEHVPTKH 231
T +L+ + P+++
Sbjct: 159 TSVLRLKPQPSRN 171
>pdb|1FJL|A Chain A, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
pdb|1FJL|B Chain B, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
pdb|1FJL|C Chain C, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
Length = 81
Score = 28.9 bits (63), Expect = 3.5, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 142 YPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175
YP ++ LA++T L++ ++ WF N R RL K
Sbjct: 42 YPDIYTREELAQRTNLTEARIQVWFQNRRARLRK 75
>pdb|3C2R|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With The Inhibitor Phthalate
pdb|3C2R|B Chain B, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With The Inhibitor Phthalate
Length = 295
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 133 WLYE--NFLHPYPTDSDKQILAKQTGLSKN 160
WL++ +FL P DS K ++AK TG +KN
Sbjct: 72 WLFKEGSFLEPSKNDSGKIVVAKITGPAKN 101
>pdb|3C2E|A Chain A, Crystal Structure At 1.9a Of The Apo Quinolinate
Phosphoribosyl Transferase (Bna6) From Saccharomyces
Cerevisiae
pdb|3C2O|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With Quinolinate
pdb|3C2F|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Saccharomyces Cerevisiae
Complexed With Prpp
pdb|3C2V|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Saccharomyces Cerevisiae
Complexed With Prpp And The Inhibitor Phthalate
Length = 294
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 133 WLYE--NFLHPYPTDSDKQILAKQTGLSKN 160
WL++ +FL P DS K ++AK TG +KN
Sbjct: 71 WLFKEGSFLEPSKNDSGKIVVAKITGPAKN 100
>pdb|2E1O|A Chain A, Solution Structure Of Rsgi Ruh-028, A Homeobox Domain From
Human Cdna
Length = 70
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 124 DHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175
D + + K + + +L P +++ LAK LS+ QV WF N R + W+
Sbjct: 17 DQTIELEKKFETQKYLSP----PERKRLAKMLQLSERQVKTWFQNRRAK-WR 63
>pdb|3NAU|A Chain A, Crystal Structure Of Zhx2 Hd2 (Zinc-Fingers And Homeoboxes
Protein 2, Homeodomain 2)
pdb|3NAU|B Chain B, Crystal Structure Of Zhx2 Hd2 (Zinc-Fingers And Homeoboxes
Protein 2, Homeodomain 2)
Length = 66
Score = 28.5 bits (62), Expect = 5.0, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 142 YPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMV 178
+P D++ L + TGL+++++ WF + R R + +V
Sbjct: 28 FPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGIV 64
>pdb|2X3L|A Chain A, Crystal Structure Of The Orn_lys_arg Decarboxylase Family
Protein Sar0482 From Methicillin-Resistant
Staphylococcus Aureus
pdb|2X3L|B Chain B, Crystal Structure Of The Orn_lys_arg Decarboxylase Family
Protein Sar0482 From Methicillin-Resistant
Staphylococcus Aureus
Length = 446
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 144 TDSDKQILAKQTGLSKNQVSNWFINARVRL 173
D ++L K G + + + NWF+NA + L
Sbjct: 290 VDDPLKLLIKYEGFTGHDIQNWFMNAHIYL 319
>pdb|1LE8|A Chain A, Crystal Structure Of The Mata1MATALPHA2-3a Heterodimer
Bound To Dna Complex
Length = 53
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 147 DKQILAKQTGLSKNQVSNWFINARVR 172
+K+ +AK+ G++ QV WFIN R+R
Sbjct: 26 EKEEVAKKCGITPLQVRVWFINKRMR 51
>pdb|3NAR|A Chain A, Crystal Structure Of Zhx1 Hd4 (Zinc-Fingers And Homeoboxes
Protein 1, Homeodomain 4)
pdb|3NAR|B Chain B, Crystal Structure Of Zhx1 Hd4 (Zinc-Fingers And Homeoboxes
Protein 1, Homeodomain 4)
Length = 96
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 141 PYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175
P P + DK LAK++GL++ + +WF + R WK
Sbjct: 50 PSPEEYDK--LAKESGLARTDIVSWFGDTRY-AWK 81
>pdb|1ZTR|A Chain A, Solution Structure Of Engrailed Homeodomain L16a Mutant
Length = 61
Score = 28.1 bits (61), Expect = 6.0, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 117 RSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRL 173
R + A +A K EN Y T+ +Q L+ + GL++ Q+ WF N R ++
Sbjct: 5 RPRTAFSSEQLARAKREFNEN---RYLTERRRQQLSSELGLNEAQIKIWFQNKRAKI 58
>pdb|1AKH|A Chain A, Mat A1ALPHA2DNA TERNARY COMPLEX
Length = 61
Score = 28.1 bits (61), Expect = 6.3, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 147 DKQILAKQTGLSKNQVSNWFINARVR 172
+K+ +AK+ G++ QV WFIN R+R
Sbjct: 34 EKEEVAKKCGITPLQVRVWFINKRMR 59
>pdb|2DN0|A Chain A, Solution Structure Of The Second Homeobox Domain Of Human
Zinc Fingers And Homeoboxes Protein 3
Length = 76
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 142 YPTDSDKQILAKQTGLSKNQVSNWFINAR 170
+P S+ + L K TGLS +V WF + R
Sbjct: 32 FPGQSEVEHLTKVTGLSTREVRKWFSDRR 60
>pdb|1YRN|A Chain A, Crystal Structure Of The Mata1MATALPHA2 HOMEODOMAIN
Heterodimer Bound To Dna
pdb|1F43|A Chain A, Solution Structure Of The Mata1 Homeodomain
Length = 61
Score = 28.1 bits (61), Expect = 6.7, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 147 DKQILAKQTGLSKNQVSNWFINARVR 172
+K+ +AK+ G++ QV WFIN R+R
Sbjct: 34 EKEEVAKKCGITPLQVRVWFINKRMR 59
>pdb|2DMT|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Barh-Like 1
Length = 80
Score = 28.1 bits (61), Expect = 6.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 142 YPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175
Y + D+ LA+ GLS+ QV W+ N R++ WK
Sbjct: 41 YLSTPDRIDLAESLGLSQLQVKTWYQNRRMK-WK 73
>pdb|2P81|A Chain A, Engrailed Homeodomain Helix-Turn-Helix Motif
Length = 44
Score = 27.7 bits (60), Expect = 7.8, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 142 YPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175
Y T+ +Q L+ + GL++ Q+ WF N R ++ K
Sbjct: 10 YLTERRRQQLSSELGLNEAQIKIWFQNKRAKIKK 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,252,265
Number of Sequences: 62578
Number of extensions: 362321
Number of successful extensions: 720
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 42
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)