Query 040555
Match_columns 313
No_of_seqs 274 out of 1141
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:18:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.8 2.3E-19 8E-24 140.0 6.9 67 114-180 6-72 (83)
2 2lk2_A Homeobox protein TGIF1; 99.8 5E-19 1.7E-23 140.9 6.5 61 121-181 11-71 (89)
3 3k2a_A Homeobox protein MEIS2; 99.7 1.3E-18 4.6E-23 130.7 6.6 62 120-181 3-64 (67)
4 1x2n_A Homeobox protein pknox1 99.7 3.2E-18 1.1E-22 129.7 8.2 66 114-179 6-71 (73)
5 1du6_A PBX1, homeobox protein 99.7 2.8E-17 9.5E-22 121.4 7.4 61 116-176 4-64 (64)
6 1k61_A Mating-type protein alp 99.7 5.3E-17 1.8E-21 118.5 7.6 58 119-176 2-59 (60)
7 1b72_B Protein (PBX1); homeodo 99.7 6.4E-17 2.2E-21 126.3 8.1 65 116-180 2-66 (87)
8 1puf_B PRE-B-cell leukemia tra 99.7 7.3E-17 2.5E-21 122.3 7.9 62 116-177 2-63 (73)
9 1le8_B Mating-type protein alp 99.7 1.7E-16 5.9E-21 123.5 7.9 61 118-178 5-65 (83)
10 1mnm_C Protein (MAT alpha-2 tr 99.6 3.1E-16 1.1E-20 122.8 8.4 60 115-174 27-86 (87)
11 2ecc_A Homeobox and leucine zi 99.6 3.6E-15 1.2E-19 115.4 7.3 60 117-179 5-64 (76)
12 1akh_A Protein (mating-type pr 99.6 5E-15 1.7E-19 108.1 6.8 56 116-174 6-61 (61)
13 1bw5_A ISL-1HD, insulin gene e 99.5 1.5E-14 5E-19 107.5 7.8 58 116-176 4-61 (66)
14 2dmu_A Homeobox protein goosec 99.5 2E-14 6.8E-19 107.9 8.6 59 115-176 7-65 (70)
15 2cra_A Homeobox protein HOX-B1 99.5 2E-14 6.9E-19 108.0 8.7 60 114-176 6-65 (70)
16 1ig7_A Homeotic protein MSX-1; 99.5 1.7E-14 5.7E-19 104.4 7.6 56 117-175 2-57 (58)
17 1jgg_A Segmentation protein EV 99.5 1.7E-14 5.9E-19 105.2 7.5 58 116-176 2-59 (60)
18 2dmq_A LIM/homeobox protein LH 99.5 1.4E-14 4.7E-19 111.3 7.2 61 114-177 6-66 (80)
19 2hdd_A Protein (engrailed home 99.5 1.8E-14 6.3E-19 105.4 7.3 57 116-175 4-60 (61)
20 2da2_A Alpha-fetoprotein enhan 99.5 2.9E-14 1E-18 106.9 8.6 59 115-176 7-65 (70)
21 2e1o_A Homeobox protein PRH; D 99.5 3E-14 1E-18 107.1 8.6 59 115-176 7-65 (70)
22 2da1_A Alpha-fetoprotein enhan 99.5 2.2E-14 7.4E-19 107.6 7.4 60 114-176 6-65 (70)
23 2dmt_A Homeobox protein BARH-l 99.5 5.9E-14 2E-18 108.1 10.0 60 114-176 16-75 (80)
24 2djn_A Homeobox protein DLX-5; 99.5 2.5E-14 8.4E-19 107.6 7.6 60 114-176 6-65 (70)
25 2da3_A Alpha-fetoprotein enhan 99.5 4.2E-14 1.4E-18 108.3 8.8 60 114-176 16-75 (80)
26 2h1k_A IPF-1, pancreatic and d 99.5 3.4E-14 1.1E-18 104.8 7.6 58 116-176 4-61 (63)
27 2cue_A Paired box protein PAX6 99.5 6.4E-14 2.2E-18 108.0 9.0 63 114-179 6-68 (80)
28 1nk2_P Homeobox protein VND; h 99.5 6.2E-14 2.1E-18 107.3 8.8 62 114-178 8-69 (77)
29 2vi6_A Homeobox protein nanog; 99.5 4.3E-14 1.5E-18 103.8 7.4 57 116-175 4-60 (62)
30 2k40_A Homeobox expressed in E 99.5 3.4E-14 1.2E-18 105.8 7.0 59 116-177 2-60 (67)
31 1fjl_A Paired protein; DNA-bin 99.5 5.7E-14 1.9E-18 108.4 8.0 60 114-176 17-76 (81)
32 3a02_A Homeobox protein arista 99.5 5.1E-14 1.7E-18 102.7 7.1 55 119-176 3-57 (60)
33 3rkq_A Homeobox protein NKX-2. 99.5 5.7E-14 2E-18 101.0 7.3 56 116-174 3-58 (58)
34 2dms_A Homeobox protein OTX2; 99.5 7.6E-14 2.6E-18 107.4 8.3 60 114-176 6-65 (80)
35 2l7z_A Homeobox protein HOX-A1 99.5 7.7E-14 2.6E-18 105.9 7.9 59 115-176 7-65 (73)
36 2kt0_A Nanog, homeobox protein 99.5 2.4E-13 8.2E-18 105.3 10.2 62 112-176 19-80 (84)
37 1ahd_P Antennapedia protein mu 99.5 6.7E-14 2.3E-18 104.8 6.8 58 116-176 3-60 (68)
38 2ecb_A Zinc fingers and homeob 99.5 2.6E-13 8.9E-18 107.8 10.5 56 118-176 14-69 (89)
39 2da4_A Hypothetical protein DK 99.5 3.6E-14 1.2E-18 109.2 5.3 62 115-176 8-70 (80)
40 1ftt_A TTF-1 HD, thyroid trans 99.5 1E-13 3.4E-18 103.8 7.5 59 116-177 3-61 (68)
41 2da5_A Zinc fingers and homeob 99.5 1.4E-13 4.6E-18 105.1 8.3 58 116-176 8-65 (75)
42 1zq3_P PRD-4, homeotic bicoid 99.5 8.9E-14 3E-18 104.1 7.1 59 116-177 3-61 (68)
43 3a03_A T-cell leukemia homeobo 99.5 1E-13 3.4E-18 100.1 6.9 53 121-176 3-55 (56)
44 1puf_A HOX-1.7, homeobox prote 99.5 1.9E-13 6.6E-18 104.6 8.7 60 115-177 13-72 (77)
45 2dn0_A Zinc fingers and homeob 99.5 1.3E-13 4.5E-18 105.2 7.3 56 118-176 11-66 (76)
46 3nau_A Zinc fingers and homeob 99.4 1.2E-13 4.1E-18 104.2 6.5 55 121-178 10-64 (66)
47 1yz8_P Pituitary homeobox 2; D 99.4 5E-14 1.7E-18 105.3 4.4 58 116-176 4-61 (68)
48 3a01_A Homeodomain-containing 99.4 1.2E-13 4.2E-18 109.7 6.6 62 114-178 16-77 (93)
49 2hi3_A Homeodomain-only protei 99.4 2.3E-13 8E-18 103.1 7.5 57 117-176 4-61 (73)
50 1b8i_A Ultrabithorax, protein 99.4 1.9E-13 6.6E-18 105.7 7.2 60 115-177 20-79 (81)
51 1uhs_A HOP, homeodomain only p 99.4 2.6E-13 8.8E-18 102.5 7.4 58 117-177 3-61 (72)
52 2m0c_A Homeobox protein arista 99.4 3.2E-13 1.1E-17 102.1 7.8 58 116-176 10-67 (75)
53 1wh5_A ZF-HD homeobox family p 99.4 3.1E-13 1.1E-17 104.8 7.7 61 115-175 17-78 (80)
54 2cuf_A FLJ21616 protein; homeo 99.4 3.8E-13 1.3E-17 106.9 8.0 60 115-177 7-81 (95)
55 2ly9_A Zinc fingers and homeob 99.4 4.7E-13 1.6E-17 101.3 8.1 58 116-176 7-64 (74)
56 2r5y_A Homeotic protein sex co 99.4 3.4E-13 1.2E-17 105.6 6.6 60 114-176 27-86 (88)
57 3nar_A ZHX1, zinc fingers and 99.4 5.5E-13 1.9E-17 106.3 7.4 64 116-182 26-89 (96)
58 3d1n_I POU domain, class 6, tr 99.4 7.6E-13 2.6E-17 113.3 8.8 59 114-175 92-150 (151)
59 2d5v_A Hepatocyte nuclear fact 99.4 5.6E-13 1.9E-17 115.3 7.5 61 114-177 96-156 (164)
60 2dmp_A Zinc fingers and homeob 99.4 1.1E-12 3.7E-17 103.5 8.2 56 118-176 16-71 (89)
61 1b72_A Protein (homeobox prote 99.4 6.3E-13 2.1E-17 106.0 6.7 61 114-177 33-93 (97)
62 2e19_A Transcription factor 8; 99.3 1.5E-12 5.2E-17 97.0 6.9 52 121-175 9-60 (64)
63 1wh7_A ZF-HD homeobox family p 99.3 1.4E-12 4.9E-17 101.2 6.1 60 115-175 17-78 (80)
64 2l9r_A Homeobox protein NKX-3. 99.3 2.9E-12 9.9E-17 97.1 6.9 53 122-177 11-63 (69)
65 2cqx_A LAG1 longevity assuranc 99.3 1.5E-12 5.2E-17 99.0 5.2 57 117-176 10-67 (72)
66 1au7_A Protein PIT-1, GHF-1; c 99.3 3.1E-12 1.1E-16 109.3 7.7 58 115-175 87-144 (146)
67 1e3o_C Octamer-binding transcr 99.3 4.6E-12 1.6E-16 109.6 7.6 59 115-176 101-159 (160)
68 2da6_A Hepatocyte nuclear fact 99.3 8E-12 2.7E-16 101.6 8.5 63 115-180 6-89 (102)
69 2xsd_C POU domain, class 3, tr 99.3 3.9E-12 1.3E-16 110.8 7.0 61 114-177 98-158 (164)
70 1x2m_A LAG1 longevity assuranc 99.2 6.9E-12 2.4E-16 94.0 5.3 51 123-175 8-58 (64)
71 1wi3_A DNA-binding protein SAT 99.2 2.3E-11 8E-16 92.4 8.0 60 114-175 6-65 (71)
72 1lfb_A Liver transcription fac 99.2 1.4E-11 4.8E-16 99.4 6.3 59 115-176 9-88 (99)
73 3l1p_A POU domain, class 5, tr 99.2 1.1E-11 3.7E-16 106.9 5.7 59 114-175 95-153 (155)
74 2h8r_A Hepatocyte nuclear fact 99.0 2.6E-10 8.7E-15 104.1 7.0 57 114-173 141-218 (221)
75 1mh3_A Maltose binding-A1 home 99.0 1.8E-10 6E-15 109.2 6.1 53 119-174 369-421 (421)
76 1ic8_A Hepatocyte nuclear fact 99.0 1.6E-10 5.6E-15 103.4 4.3 58 115-175 115-193 (194)
77 2da7_A Zinc finger homeobox pr 99.0 6.6E-10 2.2E-14 84.7 6.5 46 124-172 14-59 (71)
78 2nzz_A Penetratin conjugated G 96.9 0.00014 4.8E-09 48.7 -0.3 21 160-180 1-21 (37)
79 2ys9_A Homeobox and leucine zi 95.2 0.014 4.6E-07 44.3 3.4 45 122-169 13-57 (70)
80 3hug_A RNA polymerase sigma fa 78.2 3.5 0.00012 30.9 5.2 50 121-178 37-86 (92)
81 1hlv_A CENP-B, major centromer 76.5 7.1 0.00024 30.6 6.8 49 118-172 4-52 (131)
82 3mzy_A RNA polymerase sigma-H 74.0 3.8 0.00013 32.4 4.6 49 121-178 109-157 (164)
83 2o8x_A Probable RNA polymerase 70.4 5.6 0.00019 27.5 4.3 49 121-177 15-63 (70)
84 3t72_q RNA polymerase sigma fa 66.9 15 0.00053 28.5 6.6 62 121-186 19-80 (99)
85 1ku3_A Sigma factor SIGA; heli 66.8 7.1 0.00024 27.8 4.3 55 120-178 9-64 (73)
86 2glo_A Brinker CG9653-PA; prot 66.4 8.2 0.00028 26.6 4.4 47 119-169 3-49 (59)
87 2p7v_B Sigma-70, RNA polymeras 65.2 5.1 0.00017 28.2 3.2 54 121-178 5-58 (68)
88 1fse_A GERE; helix-turn-helix 64.6 12 0.0004 26.1 5.1 54 118-180 8-61 (74)
89 1tty_A Sigma-A, RNA polymerase 64.2 9.2 0.00031 28.4 4.6 55 121-179 18-72 (87)
90 1je8_A Nitrate/nitrite respons 61.7 10 0.00035 27.9 4.5 53 120-181 20-72 (82)
91 1s7o_A Hypothetical UPF0122 pr 59.8 18 0.0006 28.7 5.8 49 121-177 22-70 (113)
92 1or7_A Sigma-24, RNA polymeras 59.0 10 0.00034 31.1 4.4 48 122-177 141-188 (194)
93 1p4w_A RCSB; solution structur 58.8 26 0.00089 27.0 6.5 53 119-180 32-84 (99)
94 1x3u_A Transcriptional regulat 58.7 9.3 0.00032 27.2 3.7 51 122-181 17-67 (79)
95 2rnj_A Response regulator prot 58.7 12 0.00042 27.8 4.5 52 120-180 28-79 (91)
96 1tc3_C Protein (TC3 transposas 57.2 19 0.00064 22.4 4.6 42 121-170 5-46 (51)
97 1rp3_A RNA polymerase sigma fa 56.3 11 0.00037 31.8 4.2 49 121-177 187-235 (239)
98 3c57_A Two component transcrip 55.1 17 0.00058 27.4 4.8 48 120-176 26-73 (95)
99 2elh_A CG11849-PA, LD40883P; s 52.1 56 0.0019 24.0 7.2 45 117-169 18-62 (87)
100 4afl_A P29ING4, inhibitor of g 51.6 40 0.0014 26.1 6.5 66 8-77 16-82 (104)
101 1xsv_A Hypothetical UPF0122 pr 50.5 23 0.00078 27.9 5.0 50 121-178 25-74 (113)
102 2q1z_A RPOE, ECF SIGE; ECF sig 48.7 6.9 0.00024 31.9 1.7 47 122-176 136-182 (184)
103 3lsg_A Two-component response 47.3 36 0.0012 25.4 5.5 41 126-169 3-43 (103)
104 2jpc_A SSRB; DNA binding prote 44.6 22 0.00075 23.9 3.6 34 149-182 17-50 (61)
105 3bd1_A CRO protein; transcript 41.0 17 0.00058 25.9 2.6 23 148-170 14-36 (79)
106 2xi8_A Putative transcription 40.4 16 0.00054 24.4 2.3 23 148-170 17-39 (66)
107 2r1j_L Repressor protein C2; p 39.9 16 0.00056 24.5 2.3 23 148-170 21-43 (68)
108 3clo_A Transcriptional regulat 39.9 35 0.0012 30.0 5.0 54 120-182 196-249 (258)
109 1zug_A Phage 434 CRO protein; 39.0 17 0.00057 24.8 2.2 24 148-171 19-42 (71)
110 2jn6_A Protein CGL2762, transp 38.7 45 0.0015 24.7 4.8 44 120-170 4-48 (97)
111 2a6c_A Helix-turn-helix motif; 37.1 37 0.0012 24.4 4.0 39 128-173 21-59 (83)
112 1iuf_A Centromere ABP1 protein 36.4 32 0.0011 28.0 3.9 48 116-169 6-60 (144)
113 3bs3_A Putative DNA-binding pr 35.7 21 0.00071 24.7 2.3 23 148-170 26-48 (76)
114 1adr_A P22 C2 repressor; trans 35.0 21 0.00073 24.5 2.3 24 148-171 21-44 (76)
115 1r69_A Repressor protein CI; g 34.1 23 0.00078 23.9 2.3 24 148-171 17-40 (69)
116 1jko_C HIN recombinase, DNA-in 33.9 30 0.001 21.8 2.7 41 121-169 5-45 (52)
117 2b5a_A C.BCLI; helix-turn-heli 33.9 23 0.00078 24.5 2.3 36 128-170 13-48 (77)
118 2wiu_B HTH-type transcriptiona 32.3 32 0.0011 24.4 3.0 38 126-170 13-50 (88)
119 3b7h_A Prophage LP1 protein 11 32.3 25 0.00086 24.3 2.3 37 127-170 9-45 (78)
120 2x48_A CAG38821; archeal virus 31.9 28 0.00095 23.0 2.4 21 148-168 34-54 (55)
121 3omt_A Uncharacterized protein 31.9 23 0.0008 24.5 2.1 23 148-170 24-46 (73)
122 3kz3_A Repressor protein CI; f 31.2 23 0.0008 25.1 2.0 23 148-170 28-50 (80)
123 1y7y_A C.AHDI; helix-turn-heli 31.2 27 0.00093 23.8 2.3 36 127-169 15-50 (74)
124 3qq6_A HTH-type transcriptiona 29.5 43 0.0015 23.8 3.3 27 148-174 26-52 (78)
125 2rn7_A IS629 ORFA; helix, all 29.2 1.2E+02 0.0042 22.6 6.0 49 120-169 5-54 (108)
126 3mn2_A Probable ARAC family tr 28.9 76 0.0026 23.7 4.7 40 126-169 3-42 (108)
127 1rzs_A Antirepressor, regulato 28.4 29 0.00099 24.1 2.0 19 148-166 13-31 (61)
128 2ict_A Antitoxin HIGA; helix-t 28.2 33 0.0011 25.1 2.4 37 127-170 10-46 (94)
129 2kpj_A SOS-response transcript 27.5 33 0.0011 25.2 2.3 23 148-170 25-47 (94)
130 2k9q_A Uncharacterized protein 26.6 33 0.0011 24.1 2.1 23 148-170 18-40 (77)
131 1l0o_C Sigma factor; bergerat 26.5 14 0.00047 31.0 0.0 47 120-174 197-243 (243)
132 3ulq_B Transcriptional regulat 26.3 84 0.0029 23.5 4.5 51 120-179 28-78 (90)
133 2ef8_A C.ECOT38IS, putative tr 26.2 37 0.0013 23.8 2.3 36 128-170 13-48 (84)
134 1l9z_H Sigma factor SIGA; heli 25.3 1E+02 0.0034 30.2 5.9 54 121-178 375-429 (438)
135 2q0o_A Probable transcriptiona 25.1 73 0.0025 27.4 4.4 48 121-177 175-222 (236)
136 1neq_A DNA-binding protein NER 24.9 37 0.0013 24.7 2.2 21 148-168 25-45 (74)
137 2lfw_A PHYR sigma-like domain; 24.8 37 0.0013 27.3 2.3 50 120-177 92-141 (157)
138 3mkl_A HTH-type transcriptiona 24.7 76 0.0026 24.3 4.1 42 123-168 5-46 (120)
139 3f6w_A XRE-family like protein 24.4 38 0.0013 23.9 2.1 23 148-170 30-52 (83)
140 3oio_A Transcriptional regulat 23.8 98 0.0034 23.3 4.5 40 126-169 8-47 (113)
141 1lmb_3 Protein (lambda repress 23.7 40 0.0014 24.3 2.1 23 148-170 33-55 (92)
142 2hin_A GP39, repressor protein 23.4 52 0.0018 24.1 2.7 21 148-168 13-33 (71)
143 1uxc_A FRUR (1-57), fructose r 23.3 76 0.0026 22.5 3.5 23 148-170 3-25 (65)
144 2l49_A C protein; P2 bacteriop 22.7 45 0.0015 24.3 2.3 24 148-171 20-43 (99)
145 3oou_A LIN2118 protein; protei 22.5 93 0.0032 23.2 4.1 40 126-169 6-45 (108)
146 3t76_A VANU, transcriptional r 22.1 47 0.0016 24.9 2.3 35 129-170 28-62 (88)
147 3s8q_A R-M controller protein; 21.2 48 0.0016 23.3 2.1 36 128-170 14-49 (82)
148 1x57_A Endothelial differentia 21.0 53 0.0018 23.7 2.3 42 122-170 10-51 (91)
149 2ewt_A BLDD, putative DNA-bind 20.6 54 0.0019 22.1 2.2 23 148-170 24-48 (71)
150 2ofy_A Putative XRE-family tra 20.5 51 0.0017 23.4 2.1 23 148-170 30-52 (86)
151 1l3l_A Transcriptional activat 20.1 87 0.003 26.8 3.9 49 119-176 171-219 (234)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-19 Score=139.99 Aligned_cols=67 Identities=37% Similarity=0.768 Sum_probs=61.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhHHH
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVEE 180 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~e 180 (313)
..+++++.|+..++.+|++||.+|..||||+.++|..||..|||+..||.|||+|+|+|.|++++++
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 3455666799999999999999999999999999999999999999999999999999999887644
No 2
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.76 E-value=5e-19 Score=140.88 Aligned_cols=61 Identities=46% Similarity=0.834 Sum_probs=58.6
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhHHHH
Q 040555 121 ALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVEEV 181 (313)
Q Consensus 121 ~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~e~ 181 (313)
-||++++.+|++||.+|+.||||+.++|..||++|||+.+||+|||+|+|+|.|++++++.
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 4999999999999999999999999999999999999999999999999999999988764
No 3
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=1.3e-18 Score=130.72 Aligned_cols=62 Identities=42% Similarity=0.911 Sum_probs=54.5
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhHHHH
Q 040555 120 RALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVEEV 181 (313)
Q Consensus 120 r~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~e~ 181 (313)
..||++++.+|+.||.+|+.||||+..+|..||..|||+..||.+||+|+|+|.|++++++.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 45999999999999999999999999999999999999999999999999999999988764
No 4
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=3.2e-18 Score=129.73 Aligned_cols=66 Identities=41% Similarity=0.755 Sum_probs=60.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhHH
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVE 179 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~ 179 (313)
..++++..|+..++.+|+.||.+|..+|||+.+++..||..|||+..||.+||+|+|+|.++++++
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 345666779999999999999999999999999999999999999999999999999999988753
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=2.8e-17 Score=121.45 Aligned_cols=61 Identities=36% Similarity=0.676 Sum_probs=57.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
.++++.|+..++.+|+.||.+|..+|||+.+++..||..+||+..||.+||+|+|.|.+++
T Consensus 4 rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 4 HIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 4566779999999999999998899999999999999999999999999999999999863
No 6
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.69 E-value=5.3e-17 Score=118.48 Aligned_cols=58 Identities=28% Similarity=0.467 Sum_probs=55.0
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 119 QRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 119 rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
++.|+..++.+|+.||..|+.+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4579999999999999999999999999999999999999999999999999998763
No 7
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.68 E-value=6.4e-17 Score=126.29 Aligned_cols=65 Identities=35% Similarity=0.659 Sum_probs=59.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhHHH
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVEE 180 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~e 180 (313)
+|+++.|+..++.+|+.||.+|..+|||+..++..||..+||+..||.+||+|+|.|.|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 46677799999999999999888899999999999999999999999999999999998876543
No 8
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.68 E-value=7.3e-17 Score=122.25 Aligned_cols=62 Identities=37% Similarity=0.723 Sum_probs=58.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
+|+++.|+..++.+|+.||.+|..+|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccc
Confidence 46677899999999999999888899999999999999999999999999999999998765
No 9
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.66 E-value=1.7e-16 Score=123.50 Aligned_cols=61 Identities=25% Similarity=0.451 Sum_probs=56.6
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhH
Q 040555 118 SQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMV 178 (313)
Q Consensus 118 ~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~ 178 (313)
+++.|+..++.+|+.||..|+.+|||+..++..||..|||+..||.+||+|+|+|.++..+
T Consensus 5 rr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 5 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 3445999999999999999999999999999999999999999999999999999987643
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.65 E-value=3.1e-16 Score=122.77 Aligned_cols=60 Identities=27% Similarity=0.429 Sum_probs=55.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhc
Q 040555 115 HWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLW 174 (313)
Q Consensus 115 ~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~k 174 (313)
.+++++.|+..++.+|+.||..|+.+|||+..+|..||..+||+..||.+||+|+|+|.|
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 344556699999999999999999999999999999999999999999999999999976
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=3.6e-15 Score=115.39 Aligned_cols=60 Identities=23% Similarity=0.432 Sum_probs=55.0
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhHH
Q 040555 117 RSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVE 179 (313)
Q Consensus 117 r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~ 179 (313)
..+..|+.+++.+|++||.. +|||+..++..||..|||+..||.+||+|+|.|.|+..+.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 45566999999999999999 9999999999999999999999999999999999876543
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.56 E-value=5e-15 Score=108.15 Aligned_cols=56 Identities=27% Similarity=0.393 Sum_probs=48.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhc
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLW 174 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~k 174 (313)
++++..|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.+
T Consensus 6 rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 6 PKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 455566999999999999999 89999999999999999999999999999999864
No 13
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.54 E-value=1.5e-14 Score=107.51 Aligned_cols=58 Identities=29% Similarity=0.406 Sum_probs=54.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 4 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 4 TRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp SCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 466677999999999999999 9999999999999999999999999999999999874
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2e-14 Score=107.95 Aligned_cols=59 Identities=24% Similarity=0.469 Sum_probs=55.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 115 HWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 115 ~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
.+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 4566777999999999999999 9999999999999999999999999999999999764
No 15
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=2e-14 Score=108.03 Aligned_cols=60 Identities=20% Similarity=0.307 Sum_probs=55.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
..++++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 34566777999999999999999 9999999999999999999999999999999999874
No 16
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=1.7e-14 Score=104.35 Aligned_cols=56 Identities=16% Similarity=0.348 Sum_probs=53.0
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhch
Q 040555 117 RSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175 (313)
Q Consensus 117 r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk 175 (313)
+++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 2 r~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 2 KPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 56677999999999999999 999999999999999999999999999999999865
No 17
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.53 E-value=1.7e-14 Score=105.22 Aligned_cols=58 Identities=22% Similarity=0.377 Sum_probs=53.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 466778999999999999999 9999999999999999999999999999999998763
No 18
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=111.32 Aligned_cols=61 Identities=26% Similarity=0.497 Sum_probs=56.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
..+|+++.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 34567778999999999999999 99999999999999999999999999999999998864
No 19
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.52 E-value=1.8e-14 Score=105.41 Aligned_cols=57 Identities=32% Similarity=0.499 Sum_probs=52.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhch
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk 175 (313)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 4 KRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ---CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 466677999999999999999 999999999999999999999999999999999876
No 20
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.52 E-value=2.9e-14 Score=106.89 Aligned_cols=59 Identities=25% Similarity=0.437 Sum_probs=55.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 115 HWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 115 ~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
.++++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 4566677999999999999999 9999999999999999999999999999999999874
No 21
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=3e-14 Score=107.06 Aligned_cols=59 Identities=24% Similarity=0.346 Sum_probs=54.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 115 HWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 115 ~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
.++++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 4556677999999999999999 9999999999999999999999999999999998764
No 22
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.52 E-value=2.2e-14 Score=107.60 Aligned_cols=60 Identities=18% Similarity=0.419 Sum_probs=55.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
..++++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 34566677999999999999999 9999999999999999999999999999999998764
No 23
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=5.9e-14 Score=108.15 Aligned_cols=60 Identities=27% Similarity=0.405 Sum_probs=55.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
..+|++..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 44566677999999999999999 9999999999999999999999999999999999874
No 24
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.5e-14 Score=107.56 Aligned_cols=60 Identities=23% Similarity=0.390 Sum_probs=55.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
..++++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 34566777999999999999998 9999999999999999999999999999999999874
No 25
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.51 E-value=4.2e-14 Score=108.32 Aligned_cols=60 Identities=25% Similarity=0.337 Sum_probs=55.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
..+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 44566677999999999999999 9999999999999999999999999999999999874
No 26
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.51 E-value=3.4e-14 Score=104.76 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=53.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 4 KRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 466677999999999999999 9999999999999999999999999999999998874
No 27
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=6.4e-14 Score=107.96 Aligned_cols=63 Identities=17% Similarity=0.318 Sum_probs=57.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhHH
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVE 179 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~ 179 (313)
..+|+++.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 34566777999999999999998 9999999999999999999999999999999999886543
No 28
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.50 E-value=6.2e-14 Score=107.29 Aligned_cols=62 Identities=18% Similarity=0.271 Sum_probs=56.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhH
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMV 178 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~ 178 (313)
..++++..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 34556667999999999999999 999999999999999999999999999999999987543
No 29
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.50 E-value=4.3e-14 Score=103.76 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=51.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhch
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk 175 (313)
++++..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 4 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 4 QKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp ----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 456667999999999999999 999999999999999999999999999999999876
No 30
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.50 E-value=3.4e-14 Score=105.82 Aligned_cols=59 Identities=24% Similarity=0.382 Sum_probs=54.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 456677999999999999988 99999999999999999999999999999999988753
No 31
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.49 E-value=5.7e-14 Score=108.39 Aligned_cols=60 Identities=27% Similarity=0.444 Sum_probs=55.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
..+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 34566677999999999999999 9999999999999999999999999999999999875
No 32
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.49 E-value=5.1e-14 Score=102.72 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=49.9
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 119 QRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 119 rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
+..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp --CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 456999999999999999 9999999999999999999999999999999999874
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.49 E-value=5.7e-14 Score=100.95 Aligned_cols=56 Identities=21% Similarity=0.320 Sum_probs=52.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhc
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLW 174 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~k 174 (313)
++++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 456667999999999999998 99999999999999999999999999999999864
No 34
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=7.6e-14 Score=107.42 Aligned_cols=60 Identities=20% Similarity=0.352 Sum_probs=55.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
..+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 34566677999999999999999 9999999999999999999999999999999998774
No 35
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.48 E-value=7.7e-14 Score=105.87 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=54.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 115 HWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 115 ~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
.++++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 3456667999999999999999 9999999999999999999999999999999999875
No 36
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.47 E-value=2.4e-13 Score=105.28 Aligned_cols=62 Identities=21% Similarity=0.293 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 112 RPPHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 112 ~~~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
+...+|++..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3345566777999999999999999 9999999999999999999999999999999998864
No 37
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.47 E-value=6.7e-14 Score=104.83 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=54.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
+|.+..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 60 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 60 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHh
Confidence 456667999999999999999 9999999999999999999999999999999999874
No 38
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=2.6e-13 Score=107.76 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=52.0
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 118 SQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 118 ~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
+.+.++.+++.+|+.+|.. ++||+..++..||..|||+..||.+||+|+|.|.++.
T Consensus 14 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred hhccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 4457999999999999999 9999999999999999999999999999999988653
No 39
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.6e-14 Score=109.24 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=54.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHc-cCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 115 HWRSQRALPDHAVAVLKTWLYEN-FLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 115 ~~r~rr~lp~~a~~iL~~wf~~h-~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
.+|++..|+.+++.+|+.||..+ ..+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 44566679999999999999983 233999999999999999999999999999999998763
No 40
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.47 E-value=1e-13 Score=103.77 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=54.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
++++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 355667999999999999999 99999999999999999999999999999999998753
No 41
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=105.14 Aligned_cols=58 Identities=16% Similarity=0.355 Sum_probs=53.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
.++++.|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 345567999999999999999 9999999999999999999999999999999998764
No 42
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.46 E-value=8.9e-14 Score=104.06 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=54.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
+|++..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 3 RRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp SCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 456677999999999999998 99999999999999999999999999999999998753
No 43
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=100.06 Aligned_cols=53 Identities=23% Similarity=0.441 Sum_probs=49.9
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 121 ALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 121 ~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 ~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 3 SFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp -CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 5899999999999999 9999999999999999999999999999999998763
No 44
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.46 E-value=1.9e-13 Score=104.56 Aligned_cols=60 Identities=22% Similarity=0.290 Sum_probs=55.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 115 HWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 115 ~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
.++++..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 4556667999999999999999 99999999999999999999999999999999998764
No 45
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.3e-13 Score=105.23 Aligned_cols=56 Identities=25% Similarity=0.421 Sum_probs=52.9
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 118 SQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 118 ~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
.++.|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 11 ~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 11 YKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 4567999999999999999 9999999999999999999999999999999999874
No 46
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=104.23 Aligned_cols=55 Identities=25% Similarity=0.506 Sum_probs=50.8
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhH
Q 040555 121 ALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMV 178 (313)
Q Consensus 121 ~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~ 178 (313)
.-+++++..|+..|.. ++||+..++..||..|||+..||.+||+|+|.|.++..+
T Consensus 10 ~~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~~ 64 (66)
T 3nau_A 10 KKTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGIV 64 (66)
T ss_dssp -CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccCc
Confidence 3588999999999999 999999999999999999999999999999999987543
No 47
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.44 E-value=5e-14 Score=105.32 Aligned_cols=58 Identities=24% Similarity=0.401 Sum_probs=54.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
++++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 61 (68)
T 1yz8_P 4 RRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 61 (68)
T ss_dssp SCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHH
Confidence 456677999999999999998 9999999999999999999999999999999998765
No 48
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.44 E-value=1.2e-13 Score=109.66 Aligned_cols=62 Identities=19% Similarity=0.373 Sum_probs=56.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhH
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMV 178 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~ 178 (313)
..++++..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 34556667999999999999999 999999999999999999999999999999999987653
No 49
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.43 E-value=2.3e-13 Score=103.09 Aligned_cols=57 Identities=16% Similarity=0.328 Sum_probs=53.0
Q ss_pred CCCCCCChhHHHHHHHHHH-HccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 117 RSQRALPDHAVAVLKTWLY-ENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 117 r~rr~lp~~a~~iL~~wf~-~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
+++..|+..++.+|+.+|. . ++||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 4 k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~ 61 (73)
T 2hi3_A 4 QTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61 (73)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 4556699999999999998 7 8999999999999999999999999999999999874
No 50
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.43 E-value=1.9e-13 Score=105.74 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=53.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 115 HWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 115 ~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
.+|++..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 3456677999999999999999 99999999999999999999999999999999998753
No 51
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.43 E-value=2.6e-13 Score=102.49 Aligned_cols=58 Identities=16% Similarity=0.333 Sum_probs=53.4
Q ss_pred CCCCCCChhHHHHHHHHHH-HccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 117 RSQRALPDHAVAVLKTWLY-ENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 117 r~rr~lp~~a~~iL~~wf~-~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
+.++.|+..++.+|+.+|. . ++||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSS---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 4566799999999999998 5 89999999999999999999999999999999998743
No 52
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.42 E-value=3.2e-13 Score=102.09 Aligned_cols=58 Identities=24% Similarity=0.404 Sum_probs=53.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
++.+..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 10 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 10 RRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp CSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 445566999999999999999 9999999999999999999999999999999998874
No 53
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.42 E-value=3.1e-13 Score=104.81 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=55.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHH-ccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhch
Q 040555 115 HWRSQRALPDHAVAVLKTWLYE-NFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175 (313)
Q Consensus 115 ~~r~rr~lp~~a~~iL~~wf~~-h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk 175 (313)
.+|+++.|+.+++..|+.+|.. ++.+|||+..++..||..+||++.||.+||+|+|.+.++
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4566667999999999998885 577899999999999999999999999999999999875
No 54
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.41 E-value=3.8e-13 Score=106.87 Aligned_cols=60 Identities=22% Similarity=0.451 Sum_probs=55.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------CChHHHhhhhhhhHhhhchhh
Q 040555 115 HWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTG---------------LSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 115 ~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tg---------------Ls~~QV~NWF~N~R~R~kk~~ 177 (313)
.+|.+..|+..++.+|+.||.. +|||+..++..||..+| |+..||.+||+|+|.|.++..
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 4556667999999999999999 99999999999999999 999999999999999998754
No 55
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.41 E-value=4.7e-13 Score=101.28 Aligned_cols=58 Identities=26% Similarity=0.441 Sum_probs=54.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
++.+..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 64 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNS 64 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTT
T ss_pred CCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhh
Confidence 455667999999999999999 9999999999999999999999999999999999874
No 56
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.40 E-value=3.4e-13 Score=105.64 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=53.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
..+|++..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 34566777999999999999998 9999999999999999999999999999999998764
No 57
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.39 E-value=5.5e-13 Score=106.26 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=57.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhHHHHH
Q 040555 116 WRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVEEVH 182 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~e~~ 182 (313)
.|+++.|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.|+..++-+.
T Consensus 26 ~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~~~ 89 (96)
T 3nar_A 26 TGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYY 89 (96)
T ss_dssp -CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccHHH
Confidence 456667999999999999999 9999999999999999999999999999999999987655443
No 58
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.39 E-value=7.6e-13 Score=113.35 Aligned_cols=59 Identities=22% Similarity=0.443 Sum_probs=54.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhch
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk 175 (313)
..+|++..|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.||
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34556667999999999999999 999999999999999999999999999999999876
No 59
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.38 E-value=5.6e-13 Score=115.26 Aligned_cols=61 Identities=25% Similarity=0.324 Sum_probs=53.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
..+|++..|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|+|.++..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 34566777999999999999999 89999999999999999999999999999999998753
No 60
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.1e-12 Score=103.49 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=51.7
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 118 SQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 118 ~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
+.++++..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 16 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 4455999999999999999 9999999999999999999999999999999988653
No 61
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.37 E-value=6.3e-13 Score=105.99 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=53.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
..++++..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 34566677999999999999998 99999999999999999999999999999999988753
No 62
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.5e-12 Score=96.96 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=48.9
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhch
Q 040555 121 ALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175 (313)
Q Consensus 121 ~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk 175 (313)
.+.++++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 3678999999999988 999999999999999999999999999999999865
No 63
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.33 E-value=1.4e-12 Score=101.25 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=53.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccC--CCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhch
Q 040555 115 HWRSQRALPDHAVAVLKTWLYENFL--HPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175 (313)
Q Consensus 115 ~~r~rr~lp~~a~~iL~~wf~~h~~--~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk 175 (313)
.+|.++.|+.+++..|+ .|.+++. ++||+..++..||..+||++.||.+||+|+|.+.++
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45666679999999999 5777654 999999999999999999999999999999999875
No 64
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.31 E-value=2.9e-12 Score=97.12 Aligned_cols=53 Identities=25% Similarity=0.379 Sum_probs=50.3
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 122 LPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 122 lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
++..++..|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 11 ~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 11 MSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 789999999999999 99999999999999999999999999999999998753
No 65
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.31 E-value=1.5e-12 Score=99.02 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=51.5
Q ss_pred CCCCCCChhHHHHHHHHH-HHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 117 RSQRALPDHAVAVLKTWL-YENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 117 r~rr~lp~~a~~iL~~wf-~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
+.++.++..++.+|+..| .. ++||+..++..||..+||++.||.+||+|+|.+.++.
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 344557888899999999 77 9999999999999999999999999999999998764
No 66
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.31 E-value=3.1e-12 Score=109.31 Aligned_cols=58 Identities=24% Similarity=0.359 Sum_probs=53.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhch
Q 040555 115 HWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175 (313)
Q Consensus 115 ~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk 175 (313)
.+|+++.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 87 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 144 (146)
T 1au7_A 87 KRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144 (146)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTS
T ss_pred CCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhc
Confidence 4556667999999999999999 999999999999999999999999999999999876
No 67
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.28 E-value=4.6e-12 Score=109.60 Aligned_cols=59 Identities=20% Similarity=0.365 Sum_probs=53.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 115 HWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 115 ~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
.+|+++.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||.
T Consensus 101 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 101 RRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4556667999999999999999 9999999999999999999999999999999999873
No 68
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=8e-12 Score=101.63 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=56.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHh---------------------CCChHHHhhhhhhhHhhh
Q 040555 115 HWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQT---------------------GLSKNQVSNWFINARVRL 173 (313)
Q Consensus 115 ~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~t---------------------gLs~~QV~NWF~N~R~R~ 173 (313)
.+|.|..|++.++.+|+.+|.. +|||+..+|+.||..+ +|+..+|.|||+|+|.|.
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 4556667999999999999999 9999999999999999 799999999999999999
Q ss_pred chhhHHH
Q 040555 174 WKPMVEE 180 (313)
Q Consensus 174 kk~~~~e 180 (313)
++....+
T Consensus 83 kr~~~~~ 89 (102)
T 2da6_A 83 AFRQKLA 89 (102)
T ss_dssp HHHHHHH
T ss_pred HHhhHhh
Confidence 8764433
No 69
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.28 E-value=3.9e-12 Score=110.81 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=51.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
..+|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp --------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cCCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 34556667999999999999999 99999999999999999999999999999999998753
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.24 E-value=6.9e-12 Score=93.98 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=45.3
Q ss_pred ChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhch
Q 040555 123 PDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175 (313)
Q Consensus 123 p~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk 175 (313)
+..+..+|+..|..+ ++||+..++..||+++||++.||.+||+|+|.+.|+
T Consensus 8 ~~~~~~~LE~~F~~~--~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 8 TAQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SSCHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred CchHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 345688999999432 899999999999999999999999999999999875
No 71
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.23 E-value=2.3e-11 Score=92.40 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=54.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhch
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk 175 (313)
..+|.|+.|+.++..+|+.+|... ++||+.++++.||.+|||++.+|..||||+|--++.
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~--~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 456777889999999999999985 899999999999999999999999999999987653
No 72
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.21 E-value=1.4e-11 Score=99.42 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=51.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHH------------------hC---CChHHHhhhhhhhHhhh
Q 040555 115 HWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQ------------------TG---LSKNQVSNWFINARVRL 173 (313)
Q Consensus 115 ~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~------------------tg---Ls~~QV~NWF~N~R~R~ 173 (313)
.+|.+..|+..++.+|+.+|.. +|||+..+|..||.. +| |+..||.+||+|+|.+.
T Consensus 9 ~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 9 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp ----CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3455567999999999999999 999999999999999 88 99999999999999988
Q ss_pred chh
Q 040555 174 WKP 176 (313)
Q Consensus 174 kk~ 176 (313)
++.
T Consensus 86 k~k 88 (99)
T 1lfb_A 86 AFR 88 (99)
T ss_dssp SCC
T ss_pred HHh
Confidence 754
No 73
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.21 E-value=1.1e-11 Score=106.88 Aligned_cols=59 Identities=25% Similarity=0.378 Sum_probs=54.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhch
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWK 175 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk 175 (313)
..+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 34566677999999999999988 999999999999999999999999999999999876
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.04 E-value=2.6e-10 Score=104.05 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=51.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------------CChHHHhhhhhhhHhh
Q 040555 114 PHWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTG---------------------LSKNQVSNWFINARVR 172 (313)
Q Consensus 114 ~~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tg---------------------Ls~~QV~NWF~N~R~R 172 (313)
..+|.|..|++.++.+|+.||.. +|||+..+|+.||..|| ||..||.|||+|+|.+
T Consensus 141 k~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 141 KMRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp -CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 34556667999999999999999 99999999999999998 8999999999999987
Q ss_pred h
Q 040555 173 L 173 (313)
Q Consensus 173 ~ 173 (313)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 5
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.03 E-value=1.8e-10 Score=109.23 Aligned_cols=53 Identities=30% Similarity=0.423 Sum_probs=49.6
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhc
Q 040555 119 QRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLW 174 (313)
Q Consensus 119 rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~k 174 (313)
++.|...++..|+..|.. ||||+..+|.+||++|||+++||++||+|||+|.|
T Consensus 369 ~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 345899999999999999 99999999999999999999999999999999865
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.00 E-value=1.6e-10 Score=103.43 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=52.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------------CChHHHhhhhhhhHhhh
Q 040555 115 HWRSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTG---------------------LSKNQVSNWFINARVRL 173 (313)
Q Consensus 115 ~~r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tg---------------------Ls~~QV~NWF~N~R~R~ 173 (313)
.+|.|..|+..++.+|+.+|.. +|||+..+|..||..++ |+..||.+||+|+|.+.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 3556667999999999999999 99999999999999999 99999999999999998
Q ss_pred ch
Q 040555 174 WK 175 (313)
Q Consensus 174 kk 175 (313)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=6.6e-10 Score=84.70 Aligned_cols=46 Identities=22% Similarity=0.405 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhh
Q 040555 124 DHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVR 172 (313)
Q Consensus 124 ~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R 172 (313)
+++..+|+++|.. ||+|+.+++..||..+||+...|+.||+|+|.+
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 6779999999999 999999999999999999999999999999974
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=96.87 E-value=0.00014 Score=48.75 Aligned_cols=21 Identities=29% Similarity=0.609 Sum_probs=17.9
Q ss_pred HHHhhhhhhhHhhhchhhHHH
Q 040555 160 NQVSNWFINARVRLWKPMVEE 180 (313)
Q Consensus 160 ~QV~NWF~N~R~R~kk~~~~e 180 (313)
.||.+||+|+|.|.||...+.
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 389999999999999877654
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.23 E-value=0.014 Score=44.28 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=40.0
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhh
Q 040555 122 LPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINA 169 (313)
Q Consensus 122 lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~ 169 (313)
.++...++|+++|.. |.....++-..|+.+++|+..||..||.-+
T Consensus 13 ~~p~~~e~L~~Yy~~---hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 13 PPPPDIQPLERYWAA---HQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCHHHHHHHHH---TCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHH---hcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 355567899999999 788999999999999999999999999643
No 80
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=78.19 E-value=3.5 Score=30.89 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=41.1
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhH
Q 040555 121 ALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMV 178 (313)
Q Consensus 121 ~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~ 178 (313)
.||+..+.+|.-.|.+ .+ .-.++|+.+|++...|.++...+|.++++.+.
T Consensus 37 ~L~~~~r~vl~l~~~~----g~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR----GW----STAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999876665 33 34789999999999999999999999977654
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=76.51 E-value=7.1 Score=30.63 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=38.3
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhh
Q 040555 118 SQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVR 172 (313)
Q Consensus 118 ~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R 172 (313)
+++.++.+.+..+-.++.+ ++.++. ..+|+..|++...|.+|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~---~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEE---NPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHH---CTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHH---CCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 4567999998777777766 666553 368999999999999998776654
No 82
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=74.04 E-value=3.8 Score=32.44 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=39.4
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhH
Q 040555 121 ALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMV 178 (313)
Q Consensus 121 ~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~ 178 (313)
.||+..+.++. .+.+ .| .-.++|+.+|++...|.++...+|.++++.+.
T Consensus 109 ~L~~~~r~v~~-~~~~----g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR----GY----SYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-HHTT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 48888888888 4443 44 34679999999999999999999999977653
No 83
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=70.43 E-value=5.6 Score=27.51 Aligned_cols=49 Identities=14% Similarity=-0.014 Sum_probs=39.3
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 121 ALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 121 ~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
.||+....++...|.+ .+ .-.++|+.+|++...|.++...++.++++.+
T Consensus 15 ~L~~~~r~il~l~~~~----g~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL----GL----SYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 4899999999877654 33 2468999999999999999999999987654
No 84
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=66.91 E-value=15 Score=28.54 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=46.3
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhHHHHHhhhh
Q 040555 121 ALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVEEVHMLEI 186 (313)
Q Consensus 121 ~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~e~~~~~~ 186 (313)
.||+..+.++.-.|...-..++ .-.++|..+|+|...|.+....+++++++.+..+......
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~----s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~ 80 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGS 80 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999877752100122 4578999999999999999999999998887665544433
No 85
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=66.76 E-value=7.1 Score=27.81 Aligned_cols=55 Identities=13% Similarity=-0.021 Sum_probs=40.7
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhc-hhhH
Q 040555 120 RALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLW-KPMV 178 (313)
Q Consensus 120 r~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~k-k~~~ 178 (313)
..||+..+.++...|.-.-...+ .-.++|..+|++...|.++...++.+++ ..+.
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~ 64 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHESR 64 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HhCCHHHHHHHHHHHhcccCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhh
Confidence 34899999999887751000122 2358999999999999999999999998 5443
No 86
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=66.39 E-value=8.2 Score=26.62 Aligned_cols=47 Identities=11% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhh
Q 040555 119 QRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINA 169 (313)
Q Consensus 119 rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~ 169 (313)
++.++.+.+......+.. ..+.......+|+..|++..+|.+|....
T Consensus 3 r~~ys~efK~~~~~~~~~----g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN----DNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH----CTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCcCCHHHHHHHHHHHHc----CCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 356888776555555443 22212236799999999999999997543
No 87
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=65.15 E-value=5.1 Score=28.20 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=40.5
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhH
Q 040555 121 ALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMV 178 (313)
Q Consensus 121 ~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~ 178 (313)
.||+..+.+|...|.-.-...+ .-.++|+.+|++...|.++...++.++++.+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~ 58 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 58 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCG
T ss_pred cCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999877611000232 33679999999999999999999999987553
No 88
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=64.64 E-value=12 Score=26.09 Aligned_cols=54 Identities=19% Similarity=0.115 Sum_probs=41.7
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhHHH
Q 040555 118 SQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVEE 180 (313)
Q Consensus 118 ~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~e 180 (313)
....|++....+|..+ . ..+ .-.++|+.+|++...|..++...+.++......+
T Consensus 8 ~~~~L~~~e~~il~~~-~----~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~ 61 (74)
T 1fse_A 8 SKPLLTKREREVFELL-V----QDK----TTKEIASELFISEKTVRNHISNAMQKLGVKGRSQ 61 (74)
T ss_dssp CCCCCCHHHHHHHHHH-T----TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHH
T ss_pred CCCCCCHHHHHHHHHH-H----cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHH
Confidence 4456999999999774 3 344 3467999999999999999999999886654433
No 89
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=64.16 E-value=9.2 Score=28.37 Aligned_cols=55 Identities=13% Similarity=0.095 Sum_probs=41.8
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhHH
Q 040555 121 ALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVE 179 (313)
Q Consensus 121 ~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~ 179 (313)
.||+..+.++...|.-.-...+ .-.++|..+|+|...|.++...++.++++.+..
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~----s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~ 72 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK----TLEEVGQYFNVTRERIRQIEVKALRKLRHPSRS 72 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSS
T ss_pred hCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999887751000122 346899999999999999999999999876543
No 90
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=61.71 E-value=10 Score=27.88 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=42.2
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhHHHH
Q 040555 120 RALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVEEV 181 (313)
Q Consensus 120 r~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~e~ 181 (313)
..|++....+|.-+ .+ .+ .-.++|+.+|++...|.++..+.+.+++.....++
T Consensus 20 ~~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l 72 (82)
T 1je8_A 20 NQLTPRERDILKLI-AQ----GL----PNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEA 72 (82)
T ss_dssp GGSCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred ccCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHH
Confidence 34999999999874 33 33 45689999999999999999999999977665554
No 91
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=59.75 E-value=18 Score=28.68 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=40.5
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 121 ALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 121 ~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
.||+..+.++...|.+ .+ .-.++|+.+|+|...|.+|...+|.++++.+
T Consensus 22 ~L~~~~r~vl~l~y~~----g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD----DY----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHT----CC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999877665 33 3478999999999999999999999987654
No 92
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=59.03 E-value=10 Score=31.09 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=39.0
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 122 LPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 122 lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
||+..+.++.-.+.+ .++ -.++|+.+|++...|.++...+|.++++.+
T Consensus 141 L~~~~r~vl~l~~~~----g~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLRELD----GLS----YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHTT----CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHc----CCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888776654 332 367999999999999999999999997654
No 93
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=58.80 E-value=26 Score=27.04 Aligned_cols=53 Identities=19% Similarity=0.113 Sum_probs=40.8
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhHHH
Q 040555 119 QRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVEE 180 (313)
Q Consensus 119 rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~e 180 (313)
...|++....+|.-++ + .+ .-.++|+.+|++...|.++..+.+.++.-.-..+
T Consensus 32 ~~~Lt~re~~Vl~l~~-~----G~----s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r~e 84 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-E----GF----LVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIA 84 (99)
T ss_dssp SSSCCHHHHHHHHHHH-H----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHH
T ss_pred cCCCCHHHHHHHHHHH-c----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHH
Confidence 4559999999997654 4 22 2378999999999999999999999885443333
No 94
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=58.68 E-value=9.3 Score=27.15 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=39.9
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhHHHH
Q 040555 122 LPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVEEV 181 (313)
Q Consensus 122 lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~e~ 181 (313)
|++....+|.-+ .+ .+ .-.++|..+|++...|.++....+.+++..-..+.
T Consensus 17 L~~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l 67 (79)
T 1x3u_A 17 LSERERQVLSAV-VA----GL----PNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHL 67 (79)
T ss_dssp HCHHHHHHHHHH-TT----TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred CCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHH
Confidence 788888888764 32 33 23589999999999999999999999987655554
No 95
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=58.67 E-value=12 Score=27.77 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=40.3
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhHHH
Q 040555 120 RALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVEE 180 (313)
Q Consensus 120 r~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~e 180 (313)
..|++..+.+|.-+ .+ .+.. .++|+.+|++...|.++..+.+.+++.....+
T Consensus 28 ~~Lt~~e~~vl~l~-~~----g~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~ 79 (91)
T 2rnj_A 28 EMLTEREMEILLLI-AK----GYSN----QEIASASHITIKTVKTHVSNILSKLEVQDRTQ 79 (91)
T ss_dssp GGCCSHHHHHHHHH-HT----TCCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCSSHH
T ss_pred hcCCHHHHHHHHHH-Hc----CCCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHH
Confidence 34899999999774 43 3322 47999999999999999999999987654433
No 96
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=57.23 E-value=19 Score=22.37 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=29.2
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhH
Q 040555 121 ALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 121 ~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R 170 (313)
.++.+....+...+.+ .+ ...++|+.+|++...|..|....+
T Consensus 5 ~l~~~~~~~i~~~~~~----g~----s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL----NV----SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCHHHHHHHHHHHHT----TC----CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 4777766444444443 33 256899999999999999986543
No 97
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=56.32 E-value=11 Score=31.75 Aligned_cols=49 Identities=27% Similarity=0.281 Sum_probs=40.8
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 121 ALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 121 ~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
.||+..+.+|...|.+ .+ .-.++|+.+|++...|..+...+|.++++.+
T Consensus 187 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE----EL----PAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc----CC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999877754 33 3467999999999999999999999997654
No 98
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=55.09 E-value=17 Score=27.43 Aligned_cols=48 Identities=19% Similarity=0.197 Sum_probs=38.8
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 120 RALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 120 r~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
..|++..+.+|.-. .+ .+ .-.++|+.+|++...|.++..+.+.+++..
T Consensus 26 ~~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGLL-SE----GL----TNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHHH-HT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 35999999999875 43 33 237899999999999999999999998654
No 99
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=52.06 E-value=56 Score=24.01 Aligned_cols=45 Identities=18% Similarity=0.294 Sum_probs=30.9
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhh
Q 040555 117 RSQRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINA 169 (313)
Q Consensus 117 r~rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~ 169 (313)
++++.++.+.+......+.. .. ....+|+.+|++...|.+|....
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~----g~----s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHD----GE----SKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHH----TC----CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHC----CC----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 34567888875444444433 22 25688999999999999997543
No 100
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=51.56 E-value=40 Score=26.09 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=42.1
Q ss_pred hccHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHH-HHHHHHHhhcccchHHHHHHH
Q 040555 8 VSSKLAWHELQLLALKVYWKYKLYCQQMQSVVASFETVAGLGHAAPYIS-FAFKAISKHFCCLKNAILDQI 77 (313)
Q Consensus 8 ~~~~~~~~~l~~~l~ev~~ry~~y~~qmq~v~~sfe~~ag~g~a~~y~~-lal~~~Sr~Fr~l~~~i~~ql 77 (313)
+-.++ +++++++.|+|.+|.....++...+..|-...| ...+... -.+..|...|.-....--..+
T Consensus 16 LP~El--~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~--~~~~~~r~~~l~~I~~~~~~~~~l~dEKv 82 (104)
T 4afl_A 16 LPFEL--QRNFQLMRDLDQRTEDLKAEIDKLATEYMSSAR--SLSSEEKLALLKQIQEAYGKCKEFGDDKV 82 (104)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445 799999999999999999999999888854333 2222211 223556666655444333333
No 101
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=50.48 E-value=23 Score=27.85 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=40.6
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhH
Q 040555 121 ALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMV 178 (313)
Q Consensus 121 ~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~ 178 (313)
.||+..+.++.-.|.+ .+ .-.++|+.+|++...|.++...+|.++++-+.
T Consensus 25 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 74 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE----DY----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK 74 (113)
T ss_dssp GSCHHHHHHHHHHHTS----CC----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3888899988877664 33 34789999999999999999999999976553
No 102
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=48.74 E-value=6.9 Score=31.90 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=36.4
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 122 LPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 122 lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
||+..+.++.-.+.+. .+| .++|+.+|++...|.++...+|.++++.
T Consensus 136 L~~~~r~vl~l~~~~g--~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 136 LPEAQRALIERAFFGD--LTH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp SCHHHHHHHHHHHHSC--CSS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CCH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 7777777777665542 222 3688899999999999999999998764
No 103
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=47.29 E-value=36 Score=25.36 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhh
Q 040555 126 AVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINA 169 (313)
Q Consensus 126 a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~ 169 (313)
.++.+..|+.+|+..+-++ -.+||+.+|+++..+...|+-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~---~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFT---LSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCC---HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 4567788999987775455 4568999999999999988755
No 104
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=44.58 E-value=22 Score=23.89 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=28.5
Q ss_pred HHHHHHhCCChHHHhhhhhhhHhhhchhhHHHHH
Q 040555 149 QILAKQTGLSKNQVSNWFINARVRLWKPMVEEVH 182 (313)
Q Consensus 149 ~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~e~~ 182 (313)
.++|+.+|++...|.++..+.+.++...-..++.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~l~ 50 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHKVTELL 50 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 5899999999999999999999998766554443
No 105
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=41.04 E-value=17 Score=25.91 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=20.9
Q ss_pred HHHHHHHhCCChHHHhhhhhhhH
Q 040555 148 KQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N~R 170 (313)
..+||+.+|++...|++|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998876
No 106
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=40.44 E-value=16 Score=24.42 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChHHHhhhhhhhH
Q 040555 148 KQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N~R 170 (313)
..+||+.+|++...|+.|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 107
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=39.87 E-value=16 Score=24.49 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChHHHhhhhhhhH
Q 040555 148 KQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N~R 170 (313)
..+||+.+|++...|++|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56899999999999999998754
No 108
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=39.86 E-value=35 Score=30.02 Aligned_cols=54 Identities=17% Similarity=0.068 Sum_probs=43.4
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhHHHHH
Q 040555 120 RALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVEEVH 182 (313)
Q Consensus 120 r~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~e~~ 182 (313)
..||+..+.+|.-.+ + .+ .-.++|+.+|++...|.+...++|.+++.....++.
T Consensus 196 ~~L~~~erevl~L~~-~----G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~~~~~ 249 (258)
T 3clo_A 196 NILSEREKEILRCIR-K----GL----SSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEAC 249 (258)
T ss_dssp TSSCHHHHHHHHHHH-T----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred ccCCHHHHHHHHHHH-c----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 459999999998763 3 33 346899999999999999999999999877655543
No 109
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=38.99 E-value=17 Score=24.75 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=21.5
Q ss_pred HHHHHHHhCCChHHHhhhhhhhHh
Q 040555 148 KQILAKQTGLSKNQVSNWFINARV 171 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N~R~ 171 (313)
..+||+.+|++...|++|..+.+.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 567999999999999999998765
No 110
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=38.71 E-value=45 Score=24.68 Aligned_cols=44 Identities=14% Similarity=0.219 Sum_probs=29.9
Q ss_pred CCCChhHHHHHHHHHHHccCC-CCCCHHHHHHHHHHhCCChHHHhhhhhhhH
Q 040555 120 RALPDHAVAVLKTWLYENFLH-PYPTDSDKQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 120 r~lp~~a~~iL~~wf~~h~~~-PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R 170 (313)
+.++.+.+...-..+.. . .+ ....+|+.+|++...|.+|....+
T Consensus 4 ~~ys~e~k~~~v~~~~~---~~g~----s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYEN---SDGA----SLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCHHHHHHHHHHHTT---GGGS----CHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHH---cCCC----hHHHHHHHHCcCHHHHHHHHHHHh
Confidence 45777776444344332 1 22 367899999999999999986543
No 111
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=37.15 E-value=37 Score=24.44 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=28.2
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhh
Q 040555 128 AVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRL 173 (313)
Q Consensus 128 ~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~ 173 (313)
..|+.+..+ ..+ ...+||+.+|++...|++|..+.+...
T Consensus 21 ~~l~~~r~~---~gl----sq~elA~~~gis~~~is~~e~g~~~~~ 59 (83)
T 2a6c_A 21 IVLQEHLRN---SGL----TQFKAAELLGVTQPRVSDLMRGKIDLF 59 (83)
T ss_dssp HHHHHHHHT---TTC----CHHHHHHHHTSCHHHHHHHHTTCGGGC
T ss_pred HHHHHHHHH---cCC----CHHHHHHHHCcCHHHHHHHHcCCCCCC
Confidence 445555555 332 357899999999999999999876433
No 112
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=36.36 E-value=32 Score=27.97 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=37.0
Q ss_pred CCCCCCCChhHHHHHHHHH-HHccCCCCCCHHHHHHHHH----Hh--CCChHHHhhhhhhh
Q 040555 116 WRSQRALPDHAVAVLKTWL-YENFLHPYPTDSDKQILAK----QT--GLSKNQVSNWFINA 169 (313)
Q Consensus 116 ~r~rr~lp~~a~~iL~~wf-~~h~~~PYPs~~eK~~LA~----~t--gLs~~QV~NWF~N~ 169 (313)
.++|..|+-+++..+..++ .+ ||-.+.. +||+ +. +++...|+.|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~---~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL---QNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS---SSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh---CCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 4567779999999999998 55 6766543 4555 77 78999999999774
No 113
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=35.66 E-value=21 Score=24.65 Aligned_cols=23 Identities=39% Similarity=0.614 Sum_probs=20.6
Q ss_pred HHHHHHHhCCChHHHhhhhhhhH
Q 040555 148 KQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N~R 170 (313)
..+||+.+|++...|+.|..+.+
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998765
No 114
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=34.98 E-value=21 Score=24.53 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.8
Q ss_pred HHHHHHHhCCChHHHhhhhhhhHh
Q 040555 148 KQILAKQTGLSKNQVSNWFINARV 171 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N~R~ 171 (313)
..+||+.+|++...|++|..+.+.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999987543
No 115
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=34.06 E-value=23 Score=23.89 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=21.4
Q ss_pred HHHHHHHhCCChHHHhhhhhhhHh
Q 040555 148 KQILAKQTGLSKNQVSNWFINARV 171 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N~R~ 171 (313)
..+||+.+|++...|++|..+.+.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999988765
No 116
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=33.90 E-value=30 Score=21.83 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=27.6
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhh
Q 040555 121 ALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINA 169 (313)
Q Consensus 121 ~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~ 169 (313)
.++.+....+...+.+ .. ...++|+.+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~----g~----s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEK----GH----PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHT----TC----CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHc----CC----CHHHHHHHHCCCHHHHHHHHHHc
Confidence 3555554444444443 22 35689999999999999998653
No 117
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=33.86 E-value=23 Score=24.50 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=26.3
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhH
Q 040555 128 AVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 128 ~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R 170 (313)
..|+.+..+ ..+ ...+||+.+|++...|+.|..+.+
T Consensus 13 ~~l~~~r~~---~gl----sq~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 13 RTLKKIRTQ---KGV----SQEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHH---TTC----CHHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHH---cCC----CHHHHHHHHCCCHHHHHHHHCCCC
Confidence 445555544 332 356899999999999999998764
No 118
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=32.34 E-value=32 Score=24.45 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhH
Q 040555 126 AVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 126 a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R 170 (313)
-...|+....+ ..+ ...+||+.+|++...|++|..+.+
T Consensus 13 ~~~~l~~~r~~---~gl----sq~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 13 LANAMKLVRQQ---NGW----TQSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHHHH---TTC----CHHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHHHHH---cCC----CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 34556666655 333 356799999999999999998854
No 119
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=32.30 E-value=25 Score=24.35 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=27.2
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhH
Q 040555 127 VAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 127 ~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R 170 (313)
...|+....+ ..+ ...+||+.+|++...|+.|..+.+
T Consensus 9 ~~~l~~~r~~---~g~----sq~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 9 SEHLMELITQ---QNL----TINRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHHH---TTC----CHHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHHH---cCC----CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 3445555555 332 246799999999999999998876
No 120
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=31.92 E-value=28 Score=23.01 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=18.4
Q ss_pred HHHHHHHhCCChHHHhhhhhh
Q 040555 148 KQILAKQTGLSKNQVSNWFIN 168 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N 168 (313)
..++|+.+|++...|.+|+..
T Consensus 34 ~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 34 VQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHHCcCHHHHHHHHHh
Confidence 567999999999999999854
No 121
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=31.87 E-value=23 Score=24.54 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChHHHhhhhhhhH
Q 040555 148 KQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N~R 170 (313)
..+||+.+|++...|+.|..+.+
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998863
No 122
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=31.23 E-value=23 Score=25.14 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChHHHhhhhhhhH
Q 040555 148 KQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N~R 170 (313)
..+||+.+|++...|++|..+.+
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 45799999999999999998764
No 123
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=31.23 E-value=27 Score=23.83 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=26.5
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhh
Q 040555 127 VAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINA 169 (313)
Q Consensus 127 ~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~ 169 (313)
...|+.+..+ ..+ ...+||+.+|++...|+.|..+.
T Consensus 15 ~~~l~~~r~~---~g~----s~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 15 GQRLRELRTA---KGL----SQETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHHH---TTC----CHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHHH---cCC----CHHHHHHHHCcCHHHHHHHHCCC
Confidence 3455555555 332 35679999999999999999876
No 124
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=29.53 E-value=43 Score=23.83 Aligned_cols=27 Identities=22% Similarity=0.157 Sum_probs=21.3
Q ss_pred HHHHHHHhCCChHHHhhhhhhhHhhhc
Q 040555 148 KQILAKQTGLSKNQVSNWFINARVRLW 174 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N~R~R~k 174 (313)
..+||+.+|++...|+.|-.+.+....
T Consensus 26 q~elA~~~gis~~~is~~E~G~~~~p~ 52 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERNLQTNPS 52 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCCCCB
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCC
Confidence 467999999999999999988443343
No 125
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=29.17 E-value=1.2e+02 Score=22.58 Aligned_cols=49 Identities=10% Similarity=0.157 Sum_probs=30.9
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCH-HHHHHHHHHhCCChHHHhhhhhhh
Q 040555 120 RALPDHAVAVLKTWLYENFLHPYPTD-SDKQILAKQTGLSKNQVSNWFINA 169 (313)
Q Consensus 120 r~lp~~a~~iL~~wf~~h~~~PYPs~-~eK~~LA~~tgLs~~QV~NWF~N~ 169 (313)
+.++.+.+...-..+.++- .-|++. .....+|+.+|++...|.+|..-.
T Consensus 5 ~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHHH
Confidence 4578877644333333310 012332 356789999999999999997643
No 126
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=28.92 E-value=76 Score=23.69 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhh
Q 040555 126 AVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINA 169 (313)
Q Consensus 126 a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~ 169 (313)
.+..+.+|+.+|+..+ ++ ...||+..|+++..+...|+..
T Consensus 3 ~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRP-IT---IEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHTTSC-CC---HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCC-CC---HHHHHHHHCCCHHHHHHHHHHH
Confidence 3556778889987666 34 5678999999999999888754
No 127
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=28.39 E-value=29 Score=24.09 Aligned_cols=19 Identities=37% Similarity=0.648 Sum_probs=17.6
Q ss_pred HHHHHHHhCCChHHHhhhh
Q 040555 148 KQILAKQTGLSKNQVSNWF 166 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF 166 (313)
...||+.+|++..-|+.|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4679999999999999998
No 128
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=28.16 E-value=33 Score=25.08 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=27.0
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhH
Q 040555 127 VAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 127 ~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R 170 (313)
...|+.+..+ ... ...+||+.+|++...|++|..+.+
T Consensus 10 g~~l~~~r~~---~gl----tq~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 10 GDIIQESLDE---LNV----SLREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHHH---HTC----CHHHHHHHHTCCHHHHHHHHHTSS
T ss_pred hHHHHHHHHH---cCC----CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 4456555555 222 357899999999999999998864
No 129
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=27.48 E-value=33 Score=25.19 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChHHHhhhhhhhH
Q 040555 148 KQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N~R 170 (313)
..+||+.+|++...|+.|..+.+
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 56799999999999999998754
No 130
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=26.60 E-value=33 Score=24.06 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChHHHhhhhhhhH
Q 040555 148 KQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N~R 170 (313)
..+||+.+|++...|+.|..+.+
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 131
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=26.49 E-value=14 Score=31.01 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhc
Q 040555 120 RALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLW 174 (313)
Q Consensus 120 r~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~k 174 (313)
..||+..+.+|.-.|.+ .+ .-.++|+.+|++...|.+++..+|.+++
T Consensus 197 ~~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 197 EELDERERLIVYLRYYK----DQ----TQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp -------------------------------------------------------
T ss_pred HhCCHHHHHHHHHHHhc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 34899999988876654 22 3468999999999999999999888764
No 132
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=26.27 E-value=84 Score=23.47 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=39.5
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhhHH
Q 040555 120 RALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPMVE 179 (313)
Q Consensus 120 r~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~~~ 179 (313)
..|++....+|.-.+ + .+ .-.++|..+|++...|.+...+.++++.-.-..
T Consensus 28 ~~Lt~rE~~Vl~l~~-~----G~----s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~r~ 78 (90)
T 3ulq_B 28 DVLTPRECLILQEVE-K----GF----TNQEIADALHLSKRSIEYSLTSIFNKLNVGSRT 78 (90)
T ss_dssp -CCCHHHHHHHHHHH-T----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHH
T ss_pred cCCCHHHHHHHHHHH-c----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHH
Confidence 459999999997654 3 33 357899999999999999999999888544333
No 133
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=26.25 E-value=37 Score=23.80 Aligned_cols=36 Identities=25% Similarity=0.189 Sum_probs=26.4
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhH
Q 040555 128 AVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 128 ~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R 170 (313)
..|+....+ ..+ ...+||+.+|++...|+.|..+.+
T Consensus 13 ~~l~~~r~~---~gl----sq~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 13 QLLTKLRKE---ASL----SQSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHH---TTC----CHHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHH---cCC----CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 445555554 333 246799999999999999998865
No 134
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=25.34 E-value=1e+02 Score=30.20 Aligned_cols=54 Identities=13% Similarity=-0.024 Sum_probs=40.9
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhc-hhhH
Q 040555 121 ALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLW-KPMV 178 (313)
Q Consensus 121 ~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~k-k~~~ 178 (313)
.|++..+.++...|.-.=..++ .-.++|..+|+|...|..+...++++++ .++.
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~----TleEIAe~LgIS~erVRqi~~RAlkKLR~~~~~ 429 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHESR 429 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHhHhh
Confidence 4888888888776641000132 5678999999999999999999999998 4443
No 135
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=25.05 E-value=73 Score=27.39 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=35.5
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 121 ALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 121 ~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
.|++..+.+|. |+.+ .+ .-.++|+.+|++...|.+...|.++|+.-.-
T Consensus 175 ~Lt~~e~~vl~-~~~~----g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~ 222 (236)
T 2q0o_A 175 MLSPREMLCLV-WASK----GK----TASVTANLTGINARTVQHYLDKARAKLDAES 222 (236)
T ss_dssp SCCHHHHHHHH-HHHT----TC----CHHHHHHHHCCCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHH-HHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCCC
Confidence 47777777773 3433 32 2367899999999999999999999985443
No 136
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=24.92 E-value=37 Score=24.69 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.5
Q ss_pred HHHHHHHhCCChHHHhhhhhh
Q 040555 148 KQILAKQTGLSKNQVSNWFIN 168 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N 168 (313)
-.+||+.+|++..-|++|..+
T Consensus 25 ~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 25 LSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 456999999999999999775
No 137
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=24.83 E-value=37 Score=27.35 Aligned_cols=50 Identities=12% Similarity=0.037 Sum_probs=39.6
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchhh
Q 040555 120 RALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKPM 177 (313)
Q Consensus 120 r~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~~ 177 (313)
..||+..+.+|.-.+.+ .+ .-.++|+.+|++...|.++...+|.++++.+
T Consensus 92 ~~Lp~~~r~vl~L~~~~----g~----s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAME----GF----SPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp TTSCTTHHHHHTTTSSS----CC----CHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HhCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 45899999888654443 33 3478999999999999999999999997644
No 138
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=24.74 E-value=76 Score=24.31 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=32.7
Q ss_pred ChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhh
Q 040555 123 PDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFIN 168 (313)
Q Consensus 123 p~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N 168 (313)
....+..+.+|+.+|+..+. .-..||+.+|++...+...|+.
T Consensus 5 ~~~~~~~~~~~i~~~~~~~~----~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 5 QPNMRTRVCTVINNNIAHEW----TLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp CCCHHHHHHHHHHTSTTSCC----CHHHHHHHTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 34556777889999766653 4677999999999999999865
No 139
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=24.41 E-value=38 Score=23.87 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChHHHhhhhhhhH
Q 040555 148 KQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N~R 170 (313)
..+||+.+|++...|+.|-.+.+
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46899999999999999998864
No 140
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=23.82 E-value=98 Score=23.31 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhh
Q 040555 126 AVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINA 169 (313)
Q Consensus 126 a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~ 169 (313)
.+..+..|+.+|+..+ ++ ...||+.+|+++..+...|+-.
T Consensus 8 ~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEANIEEP-LS---TDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHTCSSSC-CC---HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCC-CC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 4566778999987776 44 5678999999999998888754
No 141
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=23.65 E-value=40 Score=24.29 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChHHHhhhhhhhH
Q 040555 148 KQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N~R 170 (313)
..+||+.+|++...|+.|..+.+
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 47899999999999999998854
No 142
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=23.41 E-value=52 Score=24.13 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChHHHhhhhhh
Q 040555 148 KQILAKQTGLSKNQVSNWFIN 168 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N 168 (313)
...||+.+|++..-|+.|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 678999999999999999865
No 143
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=23.34 E-value=76 Score=22.54 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChHHHhhhhhhhH
Q 040555 148 KQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N~R 170 (313)
..+||+.+|++...|+.++.+.+
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998876
No 144
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=22.71 E-value=45 Score=24.33 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=20.9
Q ss_pred HHHHHHHhCCChHHHhhhhhhhHh
Q 040555 148 KQILAKQTGLSKNQVSNWFINARV 171 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N~R~ 171 (313)
..+||+.+|++...|++|..+.+.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999988653
No 145
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=22.45 E-value=93 Score=23.23 Aligned_cols=40 Identities=10% Similarity=0.200 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhh
Q 040555 126 AVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINA 169 (313)
Q Consensus 126 a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~ 169 (313)
.+..+.+|+.+|+..+. .-..||+.+|+++..+...|+..
T Consensus 6 ~i~~~~~~i~~~~~~~~----~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 6 IIQNVLSYITEHFSEGM----SLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHHTTSCC----CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 35566788888766552 56679999999999999888754
No 146
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=22.06 E-value=47 Score=24.92 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=26.6
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhH
Q 040555 129 VLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 129 iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R 170 (313)
.|+.+..+ ..+ ...+||+.+|++...|+.|..+.+
T Consensus 28 rLk~lR~~---~gl----Tq~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 28 KLWKLLID---RDM----KKGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp HHHHHHHH---TTC----CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHH---cCC----CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 35555555 333 457899999999999999999954
No 147
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=21.25 E-value=48 Score=23.33 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=26.1
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhH
Q 040555 128 AVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 128 ~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R 170 (313)
..|+.+-.+ ..+ ...+||+.+|++...|+.|-.+.+
T Consensus 14 ~~lk~~R~~---~gl----sq~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 14 FVIKKIRLE---KGM----TQEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHH---TTC----CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHH---cCC----CHHHHHHHhCcCHHHHHHHHCCCC
Confidence 445555444 332 346899999999999999998763
No 148
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=21.00 E-value=53 Score=23.74 Aligned_cols=42 Identities=7% Similarity=0.007 Sum_probs=30.1
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhH
Q 040555 122 LPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 122 lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R 170 (313)
+.......|+.+..+ ..+ ...+||+.+|++...|++|..+.+
T Consensus 10 ~~~~~~~~l~~~r~~---~gl----sq~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 10 VTLEVGKVIQQGRQS---KGL----TQKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp CCCHHHHHHHHHHHT---TTC----CHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHH---cCC----CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 344455667666555 332 346799999999999999998864
No 149
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=20.62 E-value=54 Score=22.14 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=20.1
Q ss_pred HHHHHHHhC--CChHHHhhhhhhhH
Q 040555 148 KQILAKQTG--LSKNQVSNWFINAR 170 (313)
Q Consensus 148 K~~LA~~tg--Ls~~QV~NWF~N~R 170 (313)
..+||+.+| ++...|++|..+.+
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCCC
Confidence 467999999 99999999998754
No 150
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=20.51 E-value=51 Score=23.44 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChHHHhhhhhhhH
Q 040555 148 KQILAKQTGLSKNQVSNWFINAR 170 (313)
Q Consensus 148 K~~LA~~tgLs~~QV~NWF~N~R 170 (313)
..+||+.+|++...|+.|..+.+
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 34899999999999999998865
No 151
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=20.08 E-value=87 Score=26.84 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=37.5
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhhhhHhhhchh
Q 040555 119 QRALPDHAVAVLKTWLYENFLHPYPTDSDKQILAKQTGLSKNQVSNWFINARVRLWKP 176 (313)
Q Consensus 119 rr~lp~~a~~iL~~wf~~h~~~PYPs~~eK~~LA~~tgLs~~QV~NWF~N~R~R~kk~ 176 (313)
...|++..+.+|. |+.+ .+ .-.++|+.+|++...|.+...|.++|+.-.
T Consensus 171 ~~~Lt~~e~~vl~-~~~~----g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 219 (234)
T 1l3l_A 171 AAWLDPKEATYLR-WIAV----GK----TMEEIADVEGVKYNSVRVKLREAMKRFDVR 219 (234)
T ss_dssp CCCCCHHHHHHHH-HHTT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHH-HHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 3458888888884 4433 33 346789999999999999999999998543
Done!