Query 040556
Match_columns 128
No_of_seqs 119 out of 1281
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 09:34:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 1.2E-18 2.6E-23 127.2 9.6 126 2-127 140-266 (968)
2 PLN00113 leucine-rich repeat r 99.8 3.4E-18 7.4E-23 124.9 9.2 127 1-127 163-290 (968)
3 KOG0617 Ras suppressor protein 99.6 2.4E-18 5.2E-23 101.4 -4.2 122 2-126 33-155 (264)
4 KOG0617 Ras suppressor protein 99.6 1.2E-17 2.6E-22 98.5 -4.0 105 2-108 56-161 (264)
5 KOG4194 Membrane glycoprotein 99.5 2.3E-15 4.9E-20 102.8 0.3 47 72-118 391-437 (873)
6 PLN03150 hypothetical protein; 99.5 4.2E-13 9.1E-18 94.5 9.9 108 4-111 420-529 (623)
7 PF14580 LRR_9: Leucine-rich r 99.4 1.2E-13 2.7E-18 82.6 4.1 122 3-127 20-146 (175)
8 PLN03150 hypothetical protein; 99.4 5.2E-13 1.1E-17 94.1 7.7 94 26-119 419-512 (623)
9 KOG4194 Membrane glycoprotein 99.4 9E-14 2E-18 95.2 3.4 128 1-128 101-228 (873)
10 KOG0444 Cytoskeletal regulator 99.4 2.2E-14 4.8E-19 99.2 -2.2 125 2-128 222-369 (1255)
11 PLN03210 Resistant to P. syrin 99.3 7.5E-12 1.6E-16 93.4 8.8 111 2-114 611-721 (1153)
12 PLN03210 Resistant to P. syrin 99.3 2.9E-11 6.4E-16 90.4 9.7 121 3-127 590-710 (1153)
13 KOG0472 Leucine-rich repeat pr 99.3 3.6E-12 7.7E-17 84.1 3.3 107 2-110 435-541 (565)
14 cd00116 LRR_RI Leucine-rich re 99.3 1.2E-11 2.5E-16 80.7 5.6 15 95-109 219-233 (319)
15 PF14580 LRR_9: Leucine-rich r 99.2 3.4E-11 7.4E-16 72.2 6.7 104 1-105 41-148 (175)
16 KOG0618 Serine/threonine phosp 99.2 7.5E-13 1.6E-17 94.2 -0.7 123 3-128 360-483 (1081)
17 cd00116 LRR_RI Leucine-rich re 99.2 2E-11 4.4E-16 79.6 5.3 126 2-127 137-284 (319)
18 PF13855 LRR_8: Leucine rich r 99.2 4.3E-11 9.3E-16 59.9 4.0 57 3-59 2-59 (61)
19 KOG0444 Cytoskeletal regulator 99.2 7.6E-12 1.7E-16 87.0 1.1 84 2-86 103-186 (1255)
20 KOG0472 Leucine-rich repeat pr 99.2 5.1E-12 1.1E-16 83.4 0.1 104 22-128 432-535 (565)
21 PF13855 LRR_8: Leucine rich r 99.1 6.8E-11 1.5E-15 59.2 3.7 59 26-84 2-60 (61)
22 KOG4237 Extracellular matrix p 99.1 1.5E-11 3.2E-16 80.9 -0.3 124 3-126 68-193 (498)
23 KOG0618 Serine/threonine phosp 99.1 3.9E-11 8.5E-16 85.8 1.6 106 1-109 382-488 (1081)
24 KOG1259 Nischarin, modulator o 99.0 1.1E-10 2.4E-15 74.9 0.8 120 3-127 285-405 (490)
25 KOG4658 Apoptotic ATPase [Sign 99.0 6.3E-10 1.4E-14 81.0 4.5 104 3-107 546-652 (889)
26 KOG4658 Apoptotic ATPase [Sign 98.9 2.3E-09 5E-14 78.2 5.8 123 4-128 525-649 (889)
27 KOG0532 Leucine-rich repeat (L 98.9 1.3E-10 2.7E-15 79.7 -1.6 103 5-111 146-248 (722)
28 PRK15370 E3 ubiquitin-protein 98.9 1.4E-08 3E-13 73.1 7.6 97 3-110 200-296 (754)
29 PRK15387 E3 ubiquitin-protein 98.8 8E-09 1.7E-13 74.4 4.5 42 74-116 423-464 (788)
30 KOG3207 Beta-tubulin folding c 98.7 2.7E-09 5.8E-14 71.2 1.1 110 1-110 145-259 (505)
31 KOG1259 Nischarin, modulator o 98.7 2.5E-09 5.3E-14 68.9 0.7 107 1-111 306-413 (490)
32 PRK15370 E3 ubiquitin-protein 98.7 1.8E-07 3.9E-12 67.6 9.4 111 3-127 179-289 (754)
33 PRK15387 E3 ubiquitin-protein 98.7 3.4E-08 7.3E-13 71.3 5.5 30 98-128 423-452 (788)
34 KOG4237 Extracellular matrix p 98.7 1.2E-08 2.5E-13 67.6 2.4 89 20-108 269-357 (498)
35 PF12799 LRR_4: Leucine Rich r 98.7 7.9E-08 1.7E-12 44.7 4.2 38 2-39 1-38 (44)
36 KOG0532 Leucine-rich repeat (L 98.6 8.2E-09 1.8E-13 71.1 1.2 121 2-128 121-241 (722)
37 COG4886 Leucine-rich repeat (L 98.6 6.8E-08 1.5E-12 65.1 3.8 79 3-83 141-219 (394)
38 KOG3207 Beta-tubulin folding c 98.5 2.5E-08 5.4E-13 66.7 1.3 88 22-109 219-313 (505)
39 COG4886 Leucine-rich repeat (L 98.5 5.3E-08 1.2E-12 65.6 2.9 103 3-108 117-220 (394)
40 KOG1909 Ran GTPase-activating 98.4 3.4E-07 7.4E-12 59.8 3.6 37 2-38 92-133 (382)
41 KOG1859 Leucine-rich repeat pr 98.4 1.2E-08 2.5E-13 72.4 -3.9 102 3-109 188-291 (1096)
42 KOG3665 ZYG-1-like serine/thre 98.3 5E-07 1.1E-11 64.8 3.8 104 3-108 123-231 (699)
43 KOG2120 SCF ubiquitin ligase, 98.3 1.7E-07 3.6E-12 60.5 1.2 125 3-127 211-369 (419)
44 KOG0531 Protein phosphatase 1, 98.3 2.3E-07 5.1E-12 63.0 1.0 103 2-109 95-198 (414)
45 KOG1909 Ran GTPase-activating 98.3 8.8E-07 1.9E-11 58.0 3.5 90 20-109 208-310 (382)
46 KOG0531 Protein phosphatase 1, 98.3 1E-07 2.2E-12 64.8 -0.9 104 4-112 74-177 (414)
47 KOG1859 Leucine-rich repeat pr 98.2 5E-08 1.1E-12 69.3 -2.9 103 4-111 166-268 (1096)
48 KOG3665 ZYG-1-like serine/thre 98.2 1.3E-06 2.8E-11 62.8 4.1 110 1-112 147-265 (699)
49 KOG1644 U2-associated snRNP A' 98.2 2.2E-06 4.7E-11 52.4 4.3 78 7-85 47-125 (233)
50 KOG1644 U2-associated snRNP A' 98.2 5.2E-06 1.1E-10 50.8 5.0 102 24-127 41-146 (233)
51 PF12799 LRR_4: Leucine Rich r 98.2 5E-06 1.1E-10 38.6 4.0 36 26-62 2-37 (44)
52 KOG4579 Leucine-rich repeat (L 98.1 8.2E-07 1.8E-11 51.2 0.9 100 7-108 32-134 (177)
53 PRK15386 type III secretion pr 98.1 2.2E-05 4.7E-10 53.2 6.8 60 2-66 52-111 (426)
54 KOG4579 Leucine-rich repeat (L 98.0 1.2E-06 2.6E-11 50.6 -0.1 81 3-85 54-135 (177)
55 PF13306 LRR_5: Leucine rich r 97.8 0.00011 2.4E-09 41.7 6.1 117 2-124 12-129 (129)
56 KOG2120 SCF ubiquitin ligase, 97.8 2.3E-06 5E-11 55.4 -1.4 83 4-86 187-273 (419)
57 KOG2739 Leucine-rich acidic nu 97.6 3.5E-05 7.5E-10 48.7 2.2 63 23-85 63-128 (260)
58 KOG2123 Uncharacterized conser 97.6 4.3E-06 9.2E-11 53.7 -1.9 98 3-103 20-123 (388)
59 COG5238 RNA1 Ran GTPase-activa 97.5 0.00046 1E-08 44.6 5.4 40 22-61 89-132 (388)
60 KOG2739 Leucine-rich acidic nu 97.5 0.00011 2.4E-09 46.5 2.7 87 21-110 39-129 (260)
61 KOG2123 Uncharacterized conser 97.3 3.8E-05 8.3E-10 49.5 -0.6 78 1-79 40-123 (388)
62 PRK15386 type III secretion pr 97.3 0.00085 1.8E-08 45.8 5.4 65 21-91 48-112 (426)
63 KOG2982 Uncharacterized conser 97.2 0.00059 1.3E-08 44.6 3.5 20 92-111 244-263 (418)
64 KOG2982 Uncharacterized conser 97.1 0.00017 3.8E-09 47.0 1.1 81 3-83 72-156 (418)
65 PF00560 LRR_1: Leucine Rich R 97.1 0.00026 5.6E-09 27.6 0.8 19 99-118 2-20 (22)
66 PF13306 LRR_5: Leucine rich r 97.0 0.0022 4.7E-08 36.4 4.9 102 20-126 7-108 (129)
67 COG5238 RNA1 Ran GTPase-activa 97.0 0.0027 5.8E-08 41.2 5.2 110 1-110 91-227 (388)
68 KOG1947 Leucine rich repeat pr 96.6 0.0016 3.4E-08 45.0 2.4 92 19-110 208-308 (482)
69 PF13504 LRR_7: Leucine rich r 96.4 0.0031 6.7E-08 22.9 1.7 14 3-16 2-15 (17)
70 smart00370 LRR Leucine-rich re 96.1 0.0073 1.6E-07 24.3 2.2 21 1-21 1-21 (26)
71 smart00369 LRR_TYP Leucine-ric 96.1 0.0073 1.6E-07 24.3 2.2 21 1-21 1-21 (26)
72 KOG3864 Uncharacterized conser 95.0 0.0083 1.8E-07 37.1 0.5 81 26-106 102-185 (221)
73 KOG4341 F-box protein containi 94.7 0.01 2.3E-07 40.5 0.3 87 23-109 318-413 (483)
74 KOG1947 Leucine rich repeat pr 94.5 0.021 4.5E-07 39.5 1.5 106 23-128 186-302 (482)
75 KOG3864 Uncharacterized conser 94.2 0.0094 2E-07 36.9 -0.6 78 49-126 101-181 (221)
76 PF13516 LRR_6: Leucine Rich r 93.8 0.04 8.7E-07 21.6 1.1 7 52-58 5-11 (24)
77 KOG0473 Leucine-rich repeat pr 92.9 0.0011 2.4E-08 41.9 -6.2 89 20-111 37-125 (326)
78 smart00365 LRR_SD22 Leucine-ri 91.7 0.18 3.9E-06 20.4 1.6 14 2-15 2-15 (26)
79 KOG0473 Leucine-rich repeat pr 90.1 0.006 1.3E-07 38.8 -5.0 81 4-86 44-124 (326)
80 KOG4341 F-box protein containi 88.4 0.084 1.8E-06 36.4 -1.0 85 25-109 138-228 (483)
81 smart00368 LRR_RI Leucine rich 85.0 0.71 1.5E-05 18.8 1.3 10 27-36 4-13 (28)
82 smart00364 LRR_BAC Leucine-ric 84.1 0.82 1.8E-05 18.5 1.2 16 3-18 3-18 (26)
83 smart00367 LRR_CC Leucine-rich 83.2 1.2 2.5E-05 17.7 1.5 10 50-59 3-12 (26)
84 KOG3763 mRNA export factor TAP 77.9 2.7 5.8E-05 30.4 2.7 36 24-59 217-254 (585)
85 KOG3763 mRNA export factor TAP 77.7 2.1 4.6E-05 30.9 2.2 66 47-112 216-285 (585)
86 PF07725 LRR_3: Leucine Rich R 59.2 6 0.00013 14.9 0.8 16 3-18 1-16 (20)
87 KOG4308 LRR-containing protein 49.3 1.5 3.2E-05 31.2 -2.8 37 73-109 262-302 (478)
88 TIGR00864 PCC polycystin catio 42.6 22 0.00047 31.3 2.2 33 8-40 1-34 (2740)
89 TIGR00864 PCC polycystin catio 37.6 33 0.00072 30.3 2.5 32 31-62 1-32 (2740)
90 smart00446 LRRcap occurring C- 28.9 31 0.00067 13.9 0.6 13 21-33 9-21 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.78 E-value=1.2e-18 Score=127.24 Aligned_cols=126 Identities=24% Similarity=0.303 Sum_probs=77.2
Q ss_pred CCCcEEEecCCCCC-CcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIK-GLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..++.+++|+++++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 34555555555554 44555666666666666666665666666666666666666666665555666666666666666
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++++
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence 66665555666666666666666666665555555566666655554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=3.4e-18 Score=124.90 Aligned_cols=127 Identities=23% Similarity=0.262 Sum_probs=80.3
Q ss_pred CCCCcEEEecCCCCC-CcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 1 MKFLQELLLDGTDIK-GLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 1 l~~L~~l~l~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+.+|+.|++++|.+.+..|..++.+++|++++
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 356677777777665 5566666677777777777766666666666666666666666666666666666666666666
Q ss_pred ecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 80 LKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
+++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++++
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 666665555565566666666666666655555555555555555544
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=2.4e-18 Score=101.43 Aligned_cols=122 Identities=26% Similarity=0.314 Sum_probs=79.8
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
++++.|.++.|++..+|+.+..+.+|+.|++.+|+ ....|..++++++|+.|+++.|+.. ..|.+||.++.|+.+++.
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 34556677777777777777777777777777777 5556666777777777777765543 456777777777777777
Q ss_pred CCcccC-cchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcc
Q 040556 82 DWQYLS-SLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEEL 126 (128)
Q Consensus 82 ~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l 126 (128)
.|++.. .+|..+..+..|+.+++++|. ...+|+.++++++|+.+
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQIL 155 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEE
Confidence 766554 345555556666666666655 33455556666665554
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.2e-17 Score=98.48 Aligned_cols=105 Identities=27% Similarity=0.312 Sum_probs=62.5
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcc-cchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIR-ELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~l~l 80 (128)
.+|+.|+++.|.++++|.++..+++|+.|++..|+ ....|..|++++.|+.|++..|+... .+|..|..+..|+.+.+
T Consensus 56 ~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl 134 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL 134 (264)
T ss_pred hhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence 45777778888887777777777777777777776 55666677777777777777766643 23433434444444444
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCS 108 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 108 (128)
+.|. ...+|+.++.+++|+.+.+.+|.
T Consensus 135 ~dnd-fe~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 135 GDND-FEILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred cCCC-cccCChhhhhhcceeEEeeccCc
Confidence 4433 22333344444444444444443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.51 E-value=2.3e-15 Score=102.78 Aligned_cols=47 Identities=26% Similarity=0.274 Sum_probs=18.5
Q ss_pred cCCCcEEeecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcC
Q 040556 72 LTGLVVLNLKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLG 118 (128)
Q Consensus 72 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 118 (128)
+++|+.|++.+|++...-.+++.++..|++|++++|.+...-+.+|.
T Consensus 391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccc
Confidence 34444444444443322223344444444444444443333333333
No 6
>PLN03150 hypothetical protein; Provisional
Probab=99.48 E-value=4.2e-13 Score=94.50 Aligned_cols=108 Identities=21% Similarity=0.274 Sum_probs=78.7
Q ss_pred CcEEEecCCCCC-CcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecC
Q 040556 4 LQELLLDGTDIK-GLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKD 82 (128)
Q Consensus 4 L~~l~l~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 82 (128)
++.|++++|.+. .+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 456777777776 5677777777888888888777777777777777888888888777777777777777888888887
Q ss_pred CcccCcchHHhhcC-CCCcEEeeecCCCCC
Q 040556 83 WQYLSSLPSTINGL-KSLKILNLSSCSKLE 111 (128)
Q Consensus 83 ~~~~~~~~~~~~~~-~~L~~l~l~~n~~~~ 111 (128)
|.+.+.+|..++.. ..+..+++.+|....
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 77777777766543 345667777666433
No 7
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.44 E-value=1.2e-13 Score=82.60 Aligned_cols=122 Identities=25% Similarity=0.191 Sum_probs=47.9
Q ss_pred CCcEEEecCCCCCCcchhhh-ccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 3 FLQELLLDGTDIKGLPLSIV-LLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
.+++|++.+|.++.+- .+. .+.+|+.|++++|.+.... .+..++.|+.|++++|.+....+.....+++|+.|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 4678899999888654 344 5788999999999966553 36778999999999988876433222468899999999
Q ss_pred CCcccCc-chHHhhcCCCCcEEeeecCCCCCCC---CcCcCCCCCCCccc
Q 040556 82 DWQYLSS-LPSTINGLKSLKILNLSSCSKLENV---PENLGKVESLEELD 127 (128)
Q Consensus 82 ~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~---~~~~~~~~~L~~l~ 127 (128)
+|++... .-..+..+++|++|++.+|++...- ...+..+|+|+.||
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 9986542 2245678899999999999876431 12356777777765
No 8
>PLN03150 hypothetical protein; Provisional
Probab=99.44 E-value=5.2e-13 Score=94.05 Aligned_cols=94 Identities=33% Similarity=0.388 Sum_probs=87.6
Q ss_pred cccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCCcEEeee
Q 040556 26 GIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSLKILNLS 105 (128)
Q Consensus 26 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 105 (128)
.++.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcCcCC
Q 040556 106 SCSKLENVPENLGK 119 (128)
Q Consensus 106 ~n~~~~~~~~~~~~ 119 (128)
+|.+.+.+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99999999887654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.43 E-value=9e-14 Score=95.15 Aligned_cols=128 Identities=24% Similarity=0.199 Sum_probs=82.3
Q ss_pred CCCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++|+++++.+|.++.+|..-....+++.|++..|.+.......+..++.|+.||++.|.+...--+.+..-.++++|++
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNL 180 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEee
Confidence 35666677777766666654444555777777777666666666667777777777776665543344444456777777
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|++...-...+..+.+|..+.++.|.++...+..|+++++|+.|+|
T Consensus 181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 777665544445556666777777777766655556666777776654
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.37 E-value=2.2e-14 Score=99.21 Aligned_cols=125 Identities=20% Similarity=0.286 Sum_probs=95.7
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcc----------------------cchhhhcccccCCEEecCCC
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNIS----------------------CLSNFISALKFLSTLNLSDG 59 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~----------------------~~~~~~~~l~~L~~L~l~~~ 59 (128)
.+|..++++.|.+..+|.++..+++|+.|++++|.+.. .+|..++.++.|+.|.+.+|
T Consensus 222 ~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred hhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccC
Confidence 45667777777777777777777777777777776543 35666777777777777777
Q ss_pred CCcc-cchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 60 TAIR-ELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 60 ~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++.. .+|.++|.+..|+.+.+++|. ...+|+.+++|..|++|.++.|.+.. +|.++.-++.|+.||+
T Consensus 302 kL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 302 KLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDL 369 (1255)
T ss_pred cccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeec
Confidence 7654 467888888888888888775 66789999999999999999888655 5788888888887764
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.34 E-value=7.5e-12 Score=93.44 Aligned_cols=111 Identities=36% Similarity=0.542 Sum_probs=77.4
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
.+|+.|++.++.+..+|..+..+++|+.++++++...+..|. ++.+++|+.|++.+|.....+|..++.+++|+.+++.
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 356777777777777776667777788888877765566654 6667778888887777666777777777788888887
Q ss_pred CCcccCcchHHhhcCCCCcEEeeecCCCCCCCC
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSSCSKLENVP 114 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 114 (128)
+|...+.+|..+ ++++|++|++++|...+.+|
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence 776666666544 56667777777665444333
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.29 E-value=2.9e-11 Score=90.36 Aligned_cols=121 Identities=28% Similarity=0.431 Sum_probs=93.9
Q ss_pred CCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecC
Q 040556 3 FLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKD 82 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 82 (128)
+|+.|.+.++.++.+|..+ ...+|+.|++.++.+. ..+..+..+++|+.++++++.....+| .++.+++|+.|++.+
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD 666 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence 3566666666666666655 4578889999988844 455556788999999999877666665 467789999999999
Q ss_pred CcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 83 WQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
|.....+|..++++++|+.|++++|...+.+|..+ ++++|+.++
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 98888899999999999999999988777777654 566776654
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.26 E-value=3.6e-12 Score=84.10 Aligned_cols=107 Identities=21% Similarity=0.231 Sum_probs=70.7
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
++|..|++++|.+.++|..+..+..|+.++++.|+ -...|........++.+-.++|++....+.+++.+.+|..+++.
T Consensus 435 ~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~ 513 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ 513 (565)
T ss_pred hcceeeecccchhhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence 45556666666666666666666666666666665 34445444444445554444455555555667888888888888
Q ss_pred CCcccCcchHHhhcCCCCcEEeeecCCCC
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSSCSKL 110 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 110 (128)
+|. ...+|+.+++|++|++|++++|++.
T Consensus 514 nNd-lq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 514 NND-LQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CCc-hhhCChhhccccceeEEEecCCccC
Confidence 776 4457778888888888888888875
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.26 E-value=1.2e-11 Score=80.74 Aligned_cols=15 Identities=47% Similarity=0.618 Sum_probs=6.9
Q ss_pred cCCCCcEEeeecCCC
Q 040556 95 GLKSLKILNLSSCSK 109 (128)
Q Consensus 95 ~~~~L~~l~l~~n~~ 109 (128)
.+++|+++++++|.+
T Consensus 219 ~~~~L~~L~ls~n~l 233 (319)
T cd00116 219 SLKSLEVLNLGDNNL 233 (319)
T ss_pred ccCCCCEEecCCCcC
Confidence 344444444444443
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=3.4e-11 Score=72.19 Aligned_cols=104 Identities=25% Similarity=0.171 Sum_probs=52.2
Q ss_pred CCCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCccc-chhhhhhcCCCcEEe
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRE-LSLSVELLTGLVVLN 79 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~ 79 (128)
+.+|+.|++++|.++.+. .+..+++|++|++++|++....+.....+++|+.|++++|++... .-..+..+++|+.++
T Consensus 41 l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp -TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred hcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 357899999999999775 577899999999999997766443334689999999999998652 235677899999999
Q ss_pred ecCCcccCcc---hHHhhcCCCCcEEeee
Q 040556 80 LKDWQYLSSL---PSTINGLKSLKILNLS 105 (128)
Q Consensus 80 l~~~~~~~~~---~~~~~~~~~L~~l~l~ 105 (128)
+.+|++...- ...+..+++|+.||-.
T Consensus 120 L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 120 LEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9999876531 2245678999998864
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.24 E-value=7.5e-13 Score=94.23 Aligned_cols=123 Identities=28% Similarity=0.239 Sum_probs=81.7
Q ss_pred CCcEEEecCCCCC-CcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 3 FLQELLLDGTDIK-GLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 3 ~L~~l~l~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
.|+.|++.+|.++ .+.+.+..+++|+.|++++|++.......+.++..|+.|++++|... .+|..+..|..|+.+...
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhc
Confidence 3556677777777 55566777888888888888755555556677888888888886654 355666677777777777
Q ss_pred CCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
+|.+. .+| .+..++.|+.+|++.|++.....++....++|++||+
T Consensus 439 sN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdl 483 (1081)
T KOG0618|consen 439 SNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDL 483 (1081)
T ss_pred CCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeec
Confidence 76643 355 5667777777777777765433222222366666664
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.22 E-value=2e-11 Score=79.58 Aligned_cols=126 Identities=26% Similarity=0.267 Sum_probs=71.1
Q ss_pred CCCcEEEecCCCCC-----CcchhhhccCcccEEeccCCCCccc----chhhhcccccCCEEecCCCCCccc----chhh
Q 040556 2 KFLQELLLDGTDIK-----GLPLSIVLLSGIVQLDLKGCKNISC----LSNFISALKFLSTLNLSDGTAIRE----LSLS 68 (128)
Q Consensus 2 ~~L~~l~l~~~~~~-----~~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~ 68 (128)
++|+.+++++|.+. .+...+..+++++.+++++|.+.+. .+..+..+++|+.|++++|.+... +...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 46677777777766 1233445556777777777765532 223344455777777777766432 2334
Q ss_pred hhhcCCCcEEeecCCcccCcchHHhh-c----CCCCcEEeeecCCCCC----CCCcCcCCCCCCCccc
Q 040556 69 VELLTGLVVLNLKDWQYLSSLPSTIN-G----LKSLKILNLSSCSKLE----NVPENLGKVESLEELD 127 (128)
Q Consensus 69 ~~~l~~L~~l~l~~~~~~~~~~~~~~-~----~~~L~~l~l~~n~~~~----~~~~~~~~~~~L~~l~ 127 (128)
+..+++|+++++++|.+.......+. . .+.|+++++++|.+.. .++..+..+++|++++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~ 284 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD 284 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 44566777787777765542222221 1 2567777777777642 1222334445555554
No 18
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.18 E-value=4.3e-11 Score=59.91 Aligned_cols=57 Identities=28% Similarity=0.303 Sum_probs=26.3
Q ss_pred CCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCC
Q 040556 3 FLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDG 59 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 59 (128)
+|++|++++|.++.++. .|..+++|+++++++|.+....+..|..+++|+++++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34445555554444432 3344444555555544444333344444444444444444
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.16 E-value=7.6e-12 Score=87.01 Aligned_cols=84 Identities=20% Similarity=0.158 Sum_probs=58.6
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
..|++++++.|.++++|..+...+++..|+++.|++-+...+-|-+++.|-+|+++.|++. .+|+.+..+..|+.|.++
T Consensus 103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcC
Confidence 4567778888888888877777777888888877744443344566777777788776543 456666677777777777
Q ss_pred CCccc
Q 040556 82 DWQYL 86 (128)
Q Consensus 82 ~~~~~ 86 (128)
+|.+.
T Consensus 182 ~NPL~ 186 (1255)
T KOG0444|consen 182 NNPLN 186 (1255)
T ss_pred CChhh
Confidence 77543
No 20
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.16 E-value=5.1e-12 Score=83.39 Aligned_cols=104 Identities=27% Similarity=0.288 Sum_probs=62.0
Q ss_pred hccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCCcE
Q 040556 22 VLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSLKI 101 (128)
Q Consensus 22 ~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 101 (128)
..++++..|++++|. ....|..++.+..||.++++.|++. ..|.....+..++.+-.+.|++....++.+.++.+|..
T Consensus 432 ~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhhhcceeeecccch-hhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 344455555555443 3344444444555555555554322 23433333334444444444544444556888999999
Q ss_pred EeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 102 LNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 102 l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
||+..|.+ ..+|+.+|++.+|+++++
T Consensus 510 LDL~nNdl-q~IPp~LgnmtnL~hLeL 535 (565)
T KOG0472|consen 510 LDLQNNDL-QQIPPILGNMTNLRHLEL 535 (565)
T ss_pred eccCCCch-hhCChhhccccceeEEEe
Confidence 99998885 557889999999999874
No 21
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.14 E-value=6.8e-11 Score=59.19 Aligned_cols=59 Identities=25% Similarity=0.213 Sum_probs=33.8
Q ss_pred cccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCc
Q 040556 26 GIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQ 84 (128)
Q Consensus 26 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 84 (128)
+|+++++++|.+....+..|..+++|+++++++|.+....+..|..+++|+++++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666665444444455556666666666655555444555556666666665554
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.08 E-value=1.5e-11 Score=80.92 Aligned_cols=124 Identities=19% Similarity=0.130 Sum_probs=98.5
Q ss_pred CCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCC-CCCcccchhhhhhcCCCcEEee
Q 040556 3 FLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSD-GTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l 80 (128)
..+.+++..|.|+.+|+ .|..+++|+++|++.|.+....|+.|..+.++..|-+.+ |++.......|+.+..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 34678899999999976 688899999999999999999999999999987777666 6666655677888999999888
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcc
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEEL 126 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l 126 (128)
.-|.+.....+++..++++..|.+.+|.+...-...+..+..++++
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL 193 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence 8888777777889999999999998888644322245555555544
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.08 E-value=3.9e-11 Score=85.77 Aligned_cols=106 Identities=24% Similarity=0.297 Sum_probs=84.3
Q ss_pred CCCCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 1 MKFLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
+.+|++|++++|+++.+|. .+..+..|+.|++++|. .+.+|.....+..|++|....|.+.. .| .+..++.|+.+|
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLD 458 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEe
Confidence 3679999999999999986 56789999999999999 77777888888999999888876654 44 566788999999
Q ss_pred ecCCcccCcchHHhhcCCCCcEEeeecCCC
Q 040556 80 LKDWQYLSSLPSTINGLKSLKILNLSSCSK 109 (128)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 109 (128)
++.|++.....+.....++|++||++||..
T Consensus 459 lS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 998887654333333447899999998873
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=1.1e-10 Score=74.94 Aligned_cols=120 Identities=26% Similarity=0.199 Sum_probs=83.8
Q ss_pred CCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecC
Q 040556 3 FLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKD 82 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 82 (128)
.|+++++++|.++.+..++.-.|+++.|+++.|++..... +..+++|+.||+++|.... +..+--.+.+++.+.+++
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhh
Confidence 4678899999999888888888999999999998665533 7788999999999976543 333444556677777777
Q ss_pred CcccCcchHHhhcCCCCcEEeeecCCCCC-CCCcCcCCCCCCCccc
Q 040556 83 WQYLSSLPSTINGLKSLKILNLSSCSKLE-NVPENLGKVESLEELD 127 (128)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~L~~l~ 127 (128)
|.+.. ...++.+-+|..||+.+|++.. +....+|+++.|+++.
T Consensus 362 N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 362 NKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred hhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 64322 1335566677778887777543 1233466777666543
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.98 E-value=6.3e-10 Score=81.01 Aligned_cols=104 Identities=31% Similarity=0.353 Sum_probs=57.0
Q ss_pred CCcEEEecCCC--CCCcchh-hhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 3 FLQELLLDGTD--IKGLPLS-IVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 3 ~L~~l~l~~~~--~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
.|++|.+.+|. +..++.. |..++.|+.||+++|.-.+..|..++.+.+|++|++++..+. .+|.+++++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 34455555553 3333332 444566666666666555566666666666666666664433 4566666666666666
Q ss_pred ecCCcccCcchHHhhcCCCCcEEeeecC
Q 040556 80 LKDWQYLSSLPSTINGLKSLKILNLSSC 107 (128)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~n 107 (128)
+..+.....+|.....+.+|+++.+...
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccccchhhhcccccEEEeecc
Confidence 6655444444444445666666666543
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=2.3e-09 Score=78.17 Aligned_cols=123 Identities=28% Similarity=0.347 Sum_probs=95.4
Q ss_pred CcEEEecCCCCCCcchhhhccCcccEEeccCCC--CcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 4 LQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCK--NISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 4 L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
.+.+.+.+|.+..++.. ..++++++|-+.+|. +....+..|..++.|+.||+++|.-.+.+|..++.+.+|++|++.
T Consensus 525 ~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred eeEEEEeccchhhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 34455556666544432 345689999998886 344444567889999999999988888999999999999999999
Q ss_pred CCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
+..+. .+|..+++++.|.+|++..+.....++.....+.+|+++.+
T Consensus 604 ~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 604 DTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred CCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 98744 78999999999999999887755555666666888887753
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.89 E-value=1.3e-10 Score=79.71 Aligned_cols=103 Identities=23% Similarity=0.330 Sum_probs=53.5
Q ss_pred cEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCc
Q 040556 5 QELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQ 84 (128)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 84 (128)
+.+-+++|+++.+|..+....+|..+|.+.|. ....|..++.+.+|+.|++.+|+... +|+.+..++ |..+|++.|+
T Consensus 146 kvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp-Li~lDfScNk 222 (722)
T KOG0532|consen 146 KVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP-LIRLDFSCNK 222 (722)
T ss_pred eeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc-eeeeecccCc
Confidence 34444445555455444444555555555555 22333335555555555555544332 344444333 6666666655
Q ss_pred ccCcchHHhhcCCCCcEEeeecCCCCC
Q 040556 85 YLSSLPSTINGLKSLKILNLSSCSKLE 111 (128)
Q Consensus 85 ~~~~~~~~~~~~~~L~~l~l~~n~~~~ 111 (128)
+ ..+|-.+.+|+.|+++-+..|++..
T Consensus 223 i-s~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 223 I-SYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred e-eecchhhhhhhhheeeeeccCCCCC
Confidence 3 3456566666666666666666544
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.86 E-value=1.4e-08 Score=73.14 Aligned_cols=97 Identities=21% Similarity=0.275 Sum_probs=54.4
Q ss_pred CCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecC
Q 040556 3 FLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKD 82 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 82 (128)
+++.|++++|.++.+|..+. .+|++|++++|.+. .+|..+ ..+|+.|++++|.+. .+|..+. .+|+.|++++
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFH 271 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEECcCCccC-cCChhHh--CCCCEEECcC
Confidence 45667777777766665443 46777777776644 334322 235666666666554 3444432 3566666666
Q ss_pred CcccCcchHHhhcCCCCcEEeeecCCCC
Q 040556 83 WQYLSSLPSTINGLKSLKILNLSSCSKL 110 (128)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 110 (128)
|++. .+|..+. ..|+.|++++|.+.
T Consensus 272 N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 272 NKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CccC-ccccccC--CCCcEEECCCCccc
Confidence 6544 3444332 35666666666544
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.78 E-value=8e-09 Score=74.37 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=26.7
Q ss_pred CCcEEeecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcC
Q 040556 74 GLVVLNLKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPEN 116 (128)
Q Consensus 74 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 116 (128)
+|+.+++++|.+. .+|..+.+++.|+.+++++|++.+..+..
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 3555566665533 46666777777777777777776654443
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.7e-09 Score=71.19 Aligned_cols=110 Identities=17% Similarity=0.141 Sum_probs=60.0
Q ss_pred CCCCcEEEecCCCCCCc---chhhhccCcccEEeccCCCCcccchhhh-cccccCCEEecCCCCCccc-chhhhhhcCCC
Q 040556 1 MKFLQELLLDGTDIKGL---PLSIVLLSGIVQLDLKGCKNISCLSNFI-SALKFLSTLNLSDGTAIRE-LSLSVELLTGL 75 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~---~~~~~~l~~L~~l~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L 75 (128)
|++++.|+++.|-+..+ ......+++|+.|+++.|++........ ..+++++.|.++.|.+++. +......+|++
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 45666777777665432 3334566777777777776554333221 2456677777777776652 23334456666
Q ss_pred cEEeecCCcccCcchHHhhcCCCCcEEeeecCCCC
Q 040556 76 VVLNLKDWQYLSSLPSTINGLKSLKILNLSSCSKL 110 (128)
Q Consensus 76 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 110 (128)
..+++..|............+..|+.|++++|++.
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 66666666322211112233445666666666643
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=2.5e-09 Score=68.88 Aligned_cols=107 Identities=23% Similarity=0.247 Sum_probs=83.6
Q ss_pred CCCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
.+.++.|++++|.+..+.+ +..+++|+.||+++|.+.... ..--.+.+++.|.+++|.+.. ..+++.+-+|..+++
T Consensus 306 ~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDL 381 (490)
T ss_pred ccceeEEeccccceeeehh-hhhcccceEeecccchhHhhh-hhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccc
Confidence 3678999999999998775 788999999999999855432 222467889999999976543 256677888999999
Q ss_pred cCCcccCc-chHHhhcCCCCcEEeeecCCCCC
Q 040556 81 KDWQYLSS-LPSTINGLKSLKILNLSSCSKLE 111 (128)
Q Consensus 81 ~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~ 111 (128)
++|++... -.+.++++++|+++.+.+|++.+
T Consensus 382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 382 SSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred cccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99986652 23467889999999999998654
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.71 E-value=1.8e-07 Score=67.57 Aligned_cols=111 Identities=22% Similarity=0.217 Sum_probs=82.0
Q ss_pred CCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecC
Q 040556 3 FLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKD 82 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 82 (128)
+...|++.++.++.+|..+. +.++.|++++|.+. .+|..+ ..+|+.|++++|.+. .+|..+. .+|+.+++++
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 45678999988888886553 57999999999866 455543 358999999998876 4565543 4799999999
Q ss_pred CcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 83 WQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
|.+. .+|..+. ..|+.|++++|.+. .+|..+. ++|+.|+
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~ 289 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLS 289 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEE
Confidence 9865 6676554 57999999999876 4565443 3555554
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.70 E-value=3.4e-08 Score=71.25 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=17.9
Q ss_pred CCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 98 SLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 98 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
.|+.|++++|.+. .+|..++.+++|+.+++
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 3455566655543 45666677777776654
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.68 E-value=1.2e-08 Score=67.63 Aligned_cols=89 Identities=26% Similarity=0.179 Sum_probs=47.3
Q ss_pred hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCC
Q 040556 20 SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSL 99 (128)
Q Consensus 20 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 99 (128)
.|..+++|+.+++++|.+....+..|....+++.|.+.+|++.......|.++..|+.|++.+|++....|.++....+|
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 34455555555555555555555555555555555555555544444445555555555555555555555555555555
Q ss_pred cEEeeecCC
Q 040556 100 KILNLSSCS 108 (128)
Q Consensus 100 ~~l~l~~n~ 108 (128)
..+++-+|+
T Consensus 349 ~~l~l~~Np 357 (498)
T KOG4237|consen 349 STLNLLSNP 357 (498)
T ss_pred eeeehccCc
Confidence 555554444
No 35
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.65 E-value=7.9e-08 Score=44.70 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=26.8
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcc
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNIS 39 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 39 (128)
++|++|++++|.+++++..+..+++|++|++++|.+..
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 46777888888887777667778888888888777543
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.65 E-value=8.2e-09 Score=71.11 Aligned_cols=121 Identities=25% Similarity=0.308 Sum_probs=99.5
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
..|++++++.|.+..+|..++.|+ |+.+-+++|+ .+..|..++...+|..|+.+.|.+.. +|..++++.+|+.+.+.
T Consensus 121 ~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 121 EALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVR 197 (722)
T ss_pred hHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHh
Confidence 356778999999999998888877 8889999998 67777778888899999999987654 67788899999999999
Q ss_pred CCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
+|.+. .+|+++..+ .|..||++.|++ ..+|-.|.+++.|+++-|
T Consensus 198 Rn~l~-~lp~El~~L-pLi~lDfScNki-s~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 198 RNHLE-DLPEELCSL-PLIRLDFSCNKI-SYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred hhhhh-hCCHHHhCC-ceeeeecccCce-eecchhhhhhhhheeeee
Confidence 99844 577777744 489999998884 557888999999988753
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=6.8e-08 Score=65.08 Aligned_cols=79 Identities=33% Similarity=0.407 Sum_probs=42.5
Q ss_pred CCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecC
Q 040556 3 FLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKD 82 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 82 (128)
+|+.++++.|.+..++..+..++.|+.|++++|. ....|......+.|+.|++++|++.. +|..+.....|+.+.+++
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcC
Confidence 5666666666666665556666667777776666 33333323355566666666655443 222222223344444444
Q ss_pred C
Q 040556 83 W 83 (128)
Q Consensus 83 ~ 83 (128)
|
T Consensus 219 N 219 (394)
T COG4886 219 N 219 (394)
T ss_pred C
Confidence 4
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.5e-08 Score=66.71 Aligned_cols=88 Identities=25% Similarity=0.229 Sum_probs=43.2
Q ss_pred hccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccc-hhhhhhcCCCcEEeecCCcccCc-chHH-----hh
Q 040556 22 VLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIREL-SLSVELLTGLVVLNLKDWQYLSS-LPST-----IN 94 (128)
Q Consensus 22 ~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~-~~~~-----~~ 94 (128)
..+|++..|++..|...........-+..|+.|++++|++.... -...+.++.|+.++++.+.+... .|+. .-
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH 298 (505)
T ss_pred HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence 34455555555554322222222223445666666666554422 13445566666666666554331 2222 23
Q ss_pred cCCCCcEEeeecCCC
Q 040556 95 GLKSLKILNLSSCSK 109 (128)
Q Consensus 95 ~~~~L~~l~l~~n~~ 109 (128)
.+.+|++|++..|++
T Consensus 299 ~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 299 TFPKLEYLNISENNI 313 (505)
T ss_pred ccccceeeecccCcc
Confidence 345677777777765
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.55 E-value=5.3e-08 Score=65.60 Aligned_cols=103 Identities=33% Similarity=0.355 Sum_probs=62.5
Q ss_pred CCcEEEecCCCCCCcchhhhccC-cccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 3 FLQELLLDGTDIKGLPLSIVLLS-GIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
.++.+.+.+|.+.+++....... +|+.+++++|.+ ...|..+..++.|+.|+++.|++.. .+...+..+.++.++++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheecc
Confidence 45667777777777766655563 777777777773 3333335667777777777766554 33333356677777777
Q ss_pred CCcccCcchHHhhcCCCCcEEeeecCC
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSSCS 108 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~ 108 (128)
+|++ ..+|........|.++.+++|.
T Consensus 195 ~N~i-~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 195 GNKI-SDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred CCcc-ccCchhhhhhhhhhhhhhcCCc
Confidence 7763 3345444444456666666653
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.40 E-value=3.4e-07 Score=59.80 Aligned_cols=37 Identities=19% Similarity=0.097 Sum_probs=20.4
Q ss_pred CCCcEEEecCCCCC-Ccchh----hhccCcccEEeccCCCCc
Q 040556 2 KFLQELLLDGTDIK-GLPLS----IVLLSGIVQLDLKGCKNI 38 (128)
Q Consensus 2 ~~L~~l~l~~~~~~-~~~~~----~~~l~~L~~l~l~~~~~~ 38 (128)
++|++++++.|.+. ..++. +..+..|+.|.+.+|.+.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 45667777777665 32222 234556666666666544
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=1.2e-08 Score=72.36 Aligned_cols=102 Identities=21% Similarity=0.149 Sum_probs=50.7
Q ss_pred CCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchh-hhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 3 FLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSN-FISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
+++.|+++.|++.++. .+..|++|+.||++.|. ....|. ....+ .|+.|++.+|.+.+. .++.++.+|+.||++
T Consensus 188 ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGLDLS 262 (1096)
T ss_pred HhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhccchh
Confidence 4555566666555444 44555566666666655 222222 11222 255555555443321 344455666666666
Q ss_pred CCcccCcc-hHHhhcCCCCcEEeeecCCC
Q 040556 82 DWQYLSSL-PSTINGLKSLKILNLSSCSK 109 (128)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~L~~l~l~~n~~ 109 (128)
.|-+.+.- -..++.+..|++|.+.||++
T Consensus 263 yNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 263 YNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 65443321 11244455566666666654
No 42
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.35 E-value=5e-07 Score=64.81 Aligned_cols=104 Identities=23% Similarity=0.348 Sum_probs=48.9
Q ss_pred CCcEEEecCCCC-C-Ccchhh-hccCcccEEeccCCCCccc-chhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEE
Q 040556 3 FLQELLLDGTDI-K-GLPLSI-VLLSGIVQLDLKGCKNISC-LSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVL 78 (128)
Q Consensus 3 ~L~~l~l~~~~~-~-~~~~~~-~~l~~L~~l~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 78 (128)
+|++|+++|... . .++..+ ..+|.|+.|.+.+-.+... ......++++|..||+++.++... .+++.+++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 355555555322 1 333333 2356666666655443322 222334556666666666554432 445555555555
Q ss_pred eecCCcccC-cchHHhhcCCCCcEEeeecCC
Q 040556 79 NLKDWQYLS-SLPSTINGLKSLKILNLSSCS 108 (128)
Q Consensus 79 ~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~ 108 (128)
.+.+-.+.. ..-..+.++++|+.||++...
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 554433322 112234455555555555433
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.7e-07 Score=60.45 Aligned_cols=125 Identities=28% Similarity=0.271 Sum_probs=66.2
Q ss_pred CCcEEEecCCCCC-CcchhhhccCcccEEeccCCCCcccch--hhhcccccCCEEecCCCCCcc----------------
Q 040556 3 FLQELLLDGTDIK-GLPLSIVLLSGIVQLDLKGCKNISCLS--NFISALKFLSTLNLSDGTAIR---------------- 63 (128)
Q Consensus 3 ~L~~l~l~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~---------------- 63 (128)
+|+-+.+.++.+. .+-..+..-.+|+.+++++++-.+... --+.++..|..|++++|....
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~ 290 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ 290 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence 4444555555554 333444455556666666654333222 123455666666666554421
Q ss_pred -------------cchhhhhhcCCCcEEeecCCcccC-cchHHhhcCCCCcEEeeecCCCCCC-CCcCcCCCCCCCccc
Q 040556 64 -------------ELSLSVELLTGLVVLNLKDWQYLS-SLPSTINGLKSLKILNLSSCSKLEN-VPENLGKVESLEELD 127 (128)
Q Consensus 64 -------------~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~l~ 127 (128)
.+.--...++++.+||++.|.... ....++..+..|+++.++.|....+ .--.++..++|.+||
T Consensus 291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLd 369 (419)
T KOG2120|consen 291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLD 369 (419)
T ss_pred hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEE
Confidence 111112356788888887765443 3344566777788888887764221 111355556666655
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.29 E-value=2.3e-07 Score=63.02 Aligned_cols=103 Identities=27% Similarity=0.223 Sum_probs=55.2
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
++++.+++.+|.+..+...+..+++|+++++++|.+....+ +..++.|+.|++.+|.+... ..+..+..|+.++++
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLS 170 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCC
Confidence 34556666666666555435556666666666666555443 34445566666666655432 223335566666666
Q ss_pred CCcccCcch-HHhhcCCCCcEEeeecCCC
Q 040556 82 DWQYLSSLP-STINGLKSLKILNLSSCSK 109 (128)
Q Consensus 82 ~~~~~~~~~-~~~~~~~~L~~l~l~~n~~ 109 (128)
+|.+...-+ . ...+..++.+++.+|.+
T Consensus 171 ~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 171 YNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred cchhhhhhhhh-hhhccchHHHhccCCch
Confidence 665433222 1 24445555555555543
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.28 E-value=8.8e-07 Score=57.95 Aligned_cols=90 Identities=22% Similarity=0.189 Sum_probs=40.0
Q ss_pred hhhccCcccEEeccCCCCccc----chhhhcccccCCEEecCCCCCcccchhhh-----hhcCCCcEEeecCCcccCcc-
Q 040556 20 SIVLLSGIVQLDLKGCKNISC----LSNFISALKFLSTLNLSDGTAIRELSLSV-----ELLTGLVVLNLKDWQYLSSL- 89 (128)
Q Consensus 20 ~~~~l~~L~~l~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~l~l~~~~~~~~~- 89 (128)
.+..|++|+.||+++|.++.. +...++.+++|+.+++++|.+...-...+ ...++|+.+.+.+|.+..+-
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence 344455555555555554432 23334445555555555555433211111 12345555555555444321
Q ss_pred ---hHHhhcCCCCcEEeeecCCC
Q 040556 90 ---PSTINGLKSLKILNLSSCSK 109 (128)
Q Consensus 90 ---~~~~~~~~~L~~l~l~~n~~ 109 (128)
...+...+.|.+|++++|.+
T Consensus 288 ~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 288 LALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhcchhhHHhcCCcccc
Confidence 11223344555555555554
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=1e-07 Score=64.76 Aligned_cols=104 Identities=30% Similarity=0.233 Sum_probs=73.3
Q ss_pred CcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCC
Q 040556 4 LQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDW 83 (128)
Q Consensus 4 L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 83 (128)
++.+.+..|.+...-..+..+.+++.+++.+|.+..... .+..+++|++|++++|.+... .++..++.|+.|++.+|
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGN 150 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhheeccC
Confidence 344455556665544457788899999999998555443 256788999999999887764 34456677899999998
Q ss_pred cccCcchHHhhcCCCCcEEeeecCCCCCC
Q 040556 84 QYLSSLPSTINGLKSLKILNLSSCSKLEN 112 (128)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 112 (128)
.+... ..+..+..|+.+++++|.+...
T Consensus 151 ~i~~~--~~~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 151 LISDI--SGLESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred cchhc--cCCccchhhhcccCCcchhhhh
Confidence 75542 2344578888999988886543
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=5e-08 Score=69.29 Aligned_cols=103 Identities=27% Similarity=0.180 Sum_probs=72.3
Q ss_pred CcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCC
Q 040556 4 LQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDW 83 (128)
Q Consensus 4 L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 83 (128)
|...++++|++..+..++.-++.++.|+++.|.+.+.. ++..+++|++||++.|.+.....-....|. |+.|.+++|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 44556777777766667777888888899888866654 577888899999988776543222233444 888888887
Q ss_pred cccCcchHHhhcCCCCcEEeeecCCCCC
Q 040556 84 QYLSSLPSTINGLKSLKILNLSSCSKLE 111 (128)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 111 (128)
.+.. + ..+.++++|+.||+++|-+.+
T Consensus 243 ~l~t-L-~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 243 ALTT-L-RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred HHHh-h-hhHHhhhhhhccchhHhhhhc
Confidence 5433 2 346678888888988886543
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.25 E-value=1.3e-06 Score=62.77 Aligned_cols=110 Identities=19% Similarity=0.163 Sum_probs=79.3
Q ss_pred CCCCcEEEecCCCCC--CcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcc-cchhhhhhcCCCcE
Q 040556 1 MKFLQELLLDGTDIK--GLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIR-ELSLSVELLTGLVV 77 (128)
Q Consensus 1 l~~L~~l~l~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~ 77 (128)
||.|+.|.+.+-.+. ++...+..+++|..||++++.+... ..++++.+|+.|.+.+=.+.. ..-..+..+.+|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 688999999997664 5566778899999999999986666 447889999988776544432 22345668999999
Q ss_pred EeecCCcccCcc--hH----HhhcCCCCcEEeeecCCCCCC
Q 040556 78 LNLKDWQYLSSL--PS----TINGLKSLKILNLSSCSKLEN 112 (128)
Q Consensus 78 l~l~~~~~~~~~--~~----~~~~~~~L~~l~l~~n~~~~~ 112 (128)
||+++....... .. .-..+++|+.||.+++.+...
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 999986533321 11 112478999999998876543
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.24 E-value=2.2e-06 Score=52.39 Aligned_cols=78 Identities=18% Similarity=0.086 Sum_probs=35.9
Q ss_pred EEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccc-hhhhhhcCCCcEEeecCCcc
Q 040556 7 LLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIREL-SLSVELLTGLVVLNLKDWQY 85 (128)
Q Consensus 7 l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~ 85 (128)
+++++|.+...+ .|..++.|.+|.+..|++....|.--..++.++.|.+.+|++.... -..+..|+.|+++.+.+|++
T Consensus 47 iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 47 IDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred ecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence 344444443322 2344555555555555544444443333445555555555443211 12233455555555555543
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.18 E-value=5.2e-06 Score=50.79 Aligned_cols=102 Identities=22% Similarity=0.102 Sum_probs=73.2
Q ss_pred cCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCc-chHHhhcCCCCcEE
Q 040556 24 LSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSS-LPSTINGLKSLKIL 102 (128)
Q Consensus 24 l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l 102 (128)
..+...+|+++|.+... ..|..++.|.+|.+++|+++...|.--..++++..|.+.+|++... .-..+..+++|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 34677789999984443 2367889999999999998876665555678899999999885431 11236678899999
Q ss_pred eeecCCCCCCC---CcCcCCCCCCCccc
Q 040556 103 NLSSCSKLENV---PENLGKVESLEELD 127 (128)
Q Consensus 103 ~l~~n~~~~~~---~~~~~~~~~L~~l~ 127 (128)
.+-+|+...+- --.+..+++|+.||
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLD 146 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEee
Confidence 99888865431 12355677777766
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.18 E-value=5e-06 Score=38.59 Aligned_cols=36 Identities=33% Similarity=0.357 Sum_probs=17.7
Q ss_pred cccEEeccCCCCcccchhhhcccccCCEEecCCCCCc
Q 040556 26 GIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAI 62 (128)
Q Consensus 26 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 62 (128)
+|++|++++|.+.. +|..+..+++|+.|++++|.+.
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 45555555555332 3333555555555555555443
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=8.2e-07 Score=51.22 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=54.8
Q ss_pred EEecCCCCCCcch---hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCC
Q 040556 7 LLLDGTDIKGLPL---SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDW 83 (128)
Q Consensus 7 l~l~~~~~~~~~~---~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 83 (128)
++++.+.+-.+++ .+.....|+..++++|.+-...++.-..++..+.++++.|.+.. +|.-+..++.|+.++++.|
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFN 110 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccC
Confidence 4444444433333 23344556666777776433333322345566777777665443 4544666777777777776
Q ss_pred cccCcchHHhhcCCCCcEEeeecCC
Q 040556 84 QYLSSLPSTINGLKSLKILNLSSCS 108 (128)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~n~ 108 (128)
.+.. .|+.+..+.++..|+..+|.
T Consensus 111 ~l~~-~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 111 PLNA-EPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cccc-chHHHHHHHhHHHhcCCCCc
Confidence 6443 45555556666666665554
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.07 E-value=2.2e-05 Score=53.20 Aligned_cols=60 Identities=22% Similarity=0.428 Sum_probs=38.8
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccch
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELS 66 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 66 (128)
.+++.|++++|.++.+|. + -.+|+.|.+++|......|..+ ..+|+.|++.+|.....+|
T Consensus 52 ~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred cCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 567888899888887772 1 2358888888776556666433 2467777777764333333
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=1.2e-06 Score=50.59 Aligned_cols=81 Identities=21% Similarity=0.231 Sum_probs=56.9
Q ss_pred CCcEEEecCCCCCCcchhhhc-cCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 3 FLQELLLDGTDIKGLPLSIVL-LSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~-l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
+|+.+++++|.++++|+.|.. ++..++++++.|. ....|..+..++.|+.+++..|.+... |..+..+.++.+|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHhcCC
Confidence 355677888888888877654 4578888888887 445555577788888888888776643 4444457777788777
Q ss_pred CCcc
Q 040556 82 DWQY 85 (128)
Q Consensus 82 ~~~~ 85 (128)
+|..
T Consensus 132 ~na~ 135 (177)
T KOG4579|consen 132 ENAR 135 (177)
T ss_pred CCcc
Confidence 7653
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.83 E-value=0.00011 Score=41.75 Aligned_cols=117 Identities=14% Similarity=0.095 Sum_probs=57.1
Q ss_pred CCCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
++|+.+.+.. .+..+.. .|..+++++.+.+..+ +.......|..+.+++.+.+.. .........+..+..++.+.+
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 4677777764 4555543 5777888999998775 4555555677787889888865 443333456667888999988
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLE 124 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 124 (128)
..+ +...-...+.+. .++.+.+.. .+.......|.++++|+
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred Ccc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 764 232223345565 788887764 33333344566666653
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=2.3e-06 Score=55.38 Aligned_cols=83 Identities=29% Similarity=0.201 Sum_probs=58.9
Q ss_pred CcEEEecCCCCC--CcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCccc--chhhhhhcCCCcEEe
Q 040556 4 LQELLLDGTDIK--GLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRE--LSLSVELLTGLVVLN 79 (128)
Q Consensus 4 L~~l~l~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~l~ 79 (128)
+++++++...++ .+...+..|.+|+.+.+.++++.+.....+..-..|+.+++++|.-.+. ..-.+.+|..|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 667778877776 3455567788899999999987777777777788899999988764332 223455677777777
Q ss_pred ecCCccc
Q 040556 80 LKDWQYL 86 (128)
Q Consensus 80 l~~~~~~ 86 (128)
++-|...
T Consensus 267 lsWc~l~ 273 (419)
T KOG2120|consen 267 LSWCFLF 273 (419)
T ss_pred chHhhcc
Confidence 7665433
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.64 E-value=3.5e-05 Score=48.75 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=27.7
Q ss_pred ccCcccEEeccCC--CCcccchhhhcccccCCEEecCCCCCcc-cchhhhhhcCCCcEEeecCCcc
Q 040556 23 LLSGIVQLDLKGC--KNISCLSNFISALKFLSTLNLSDGTAIR-ELSLSVELLTGLVVLNLKDWQY 85 (128)
Q Consensus 23 ~l~~L~~l~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~ 85 (128)
.+++|+.|.+++| ++.+.++...-.+++|+++++++|++.. ..-.....+.+|..|++..|..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 3445555555555 3333333323334555555555554432 1112233444455555555443
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=4.3e-06 Score=53.70 Aligned_cols=98 Identities=17% Similarity=0.054 Sum_probs=61.5
Q ss_pred CCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccc-hhhhhhcCCCcEEeec
Q 040556 3 FLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIREL-SLSVELLTGLVVLNLK 81 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l~l~ 81 (128)
+.+.|+..|+.+.++. .+..++.|+.|.++-|.+++..| +..|+.|+.|.+-.|.+.... ..-+.++++|+.|=+.
T Consensus 20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 3455677777776554 23566777888888887666554 567777777777777665422 2345667777777777
Q ss_pred CCcccCcchHH-----hhcCCCCcEEe
Q 040556 82 DWQYLSSLPST-----INGLKSLKILN 103 (128)
Q Consensus 82 ~~~~~~~~~~~-----~~~~~~L~~l~ 103 (128)
.|...+.-+.. +.-+++|++||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 77666644332 33455565554
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.46 E-value=0.00046 Score=44.57 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=20.5
Q ss_pred hccCcccEEeccCCCCcccch----hhhcccccCCEEecCCCCC
Q 040556 22 VLLSGIVQLDLKGCKNISCLS----NFISALKFLSTLNLSDGTA 61 (128)
Q Consensus 22 ~~l~~L~~l~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~ 61 (128)
.+|++++.+++++|.+....| ..+++.+.+.+|.+.+|.+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 345566666666655544333 2234445555555555544
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.46 E-value=0.00011 Score=46.50 Aligned_cols=87 Identities=25% Similarity=0.244 Sum_probs=61.6
Q ss_pred hhccCcccEEeccCCCCcccchhhhcccccCCEEecCCC--CCcccchhhhhhcCCCcEEeecCCcccC--cchHHhhcC
Q 040556 21 IVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDG--TAIRELSLSVELLTGLVVLNLKDWQYLS--SLPSTINGL 96 (128)
Q Consensus 21 ~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~~ 96 (128)
...+..|+.+++.+..+++.. .+..+++|+.|.+++| +..+.++...-.+++|+++++++|++.- .+ ..+..+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhh
Confidence 345667777788777755442 2567889999999999 6666666666677999999999997553 12 224556
Q ss_pred CCCcEEeeecCCCC
Q 040556 97 KSLKILNLSSCSKL 110 (128)
Q Consensus 97 ~~L~~l~l~~n~~~ 110 (128)
.+|..|++..|.-.
T Consensus 116 ~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVT 129 (260)
T ss_pred cchhhhhcccCCcc
Confidence 67788888877643
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=3.8e-05 Score=49.48 Aligned_cols=78 Identities=23% Similarity=0.236 Sum_probs=61.9
Q ss_pred CCCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccch-hhhcccccCCEEecCCCCCcccchh-----hhhhcCC
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLS-NFISALKFLSTLNLSDGTAIRELSL-----SVELLTG 74 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-----~~~~l~~ 74 (128)
|+.|++|.++-|+++.+. .+..|++|++|+++.|.+..... ..+.++++|+.|.+..|...+.... .+.-+|+
T Consensus 40 Mp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn 118 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN 118 (388)
T ss_pred cccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHccc
Confidence 567899999999998664 36789999999999999776543 4578899999999999888765442 3556788
Q ss_pred CcEEe
Q 040556 75 LVVLN 79 (128)
Q Consensus 75 L~~l~ 79 (128)
|+.||
T Consensus 119 LkKLD 123 (388)
T KOG2123|consen 119 LKKLD 123 (388)
T ss_pred chhcc
Confidence 88876
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.29 E-value=0.00085 Score=45.78 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=46.4
Q ss_pred hhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchH
Q 040556 21 IVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPS 91 (128)
Q Consensus 21 ~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~ 91 (128)
+..+.++..|++++|. ...+|. -..+|+.|.+.+|.....+|..+. .+|+.|++.+|.....+|.
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 4457899999999996 455552 224699999998777666665543 5799999998854445554
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.00059 Score=44.63 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=11.4
Q ss_pred HhhcCCCCcEEeeecCCCCC
Q 040556 92 TINGLKSLKILNLSSCSKLE 111 (128)
Q Consensus 92 ~~~~~~~L~~l~l~~n~~~~ 111 (128)
++.+++.|+-+.+.++++..
T Consensus 244 ~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 244 ALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HHcCCchhheeeccCCcccc
Confidence 34455666666666665543
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.00017 Score=46.99 Aligned_cols=81 Identities=22% Similarity=0.158 Sum_probs=38.3
Q ss_pred CCcEEEecCCCCCCcch---hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCccc-chhhhhhcCCCcEE
Q 040556 3 FLQELLLDGTDIKGLPL---SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRE-LSLSVELLTGLVVL 78 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~---~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l 78 (128)
.++.+++.+|.+.++.. .+..+|.+++|+++.|++...+....-...+|+.+-+.+....|. ....+..+|.++.+
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 34555666666654322 234456666666666654443322112234555555555444332 22333444455555
Q ss_pred eecCC
Q 040556 79 NLKDW 83 (128)
Q Consensus 79 ~l~~~ 83 (128)
.++.|
T Consensus 152 HmS~N 156 (418)
T KOG2982|consen 152 HMSDN 156 (418)
T ss_pred hhccc
Confidence 44444
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.06 E-value=0.00026 Score=27.63 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=10.3
Q ss_pred CcEEeeecCCCCCCCCcCcC
Q 040556 99 LKILNLSSCSKLENVPENLG 118 (128)
Q Consensus 99 L~~l~l~~n~~~~~~~~~~~ 118 (128)
|++|++++|.+. .+|+.++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 556666666544 4555444
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.03 E-value=0.0022 Score=36.39 Aligned_cols=102 Identities=13% Similarity=0.092 Sum_probs=56.3
Q ss_pred hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCC
Q 040556 20 SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSL 99 (128)
Q Consensus 20 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 99 (128)
.|..+++++.+.+.. .+.......|..+.+++.+.+..+ +.......+..+..++.+.+.. .....-...+..++.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 467788999999885 445555567888889999999874 5544456677887899999965 3232223456678899
Q ss_pred cEEeeecCCCCCCCCcCcCCCCCCCcc
Q 040556 100 KILNLSSCSKLENVPENLGKVESLEEL 126 (128)
Q Consensus 100 ~~l~l~~n~~~~~~~~~~~~~~~L~~l 126 (128)
+.+.+..+ +...-...+.++ +++.+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EE
T ss_pred cccccCcc-ccEEchhhhcCC-CceEE
Confidence 99998654 332223345554 55443
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.98 E-value=0.0027 Score=41.21 Aligned_cols=110 Identities=14% Similarity=0.036 Sum_probs=50.0
Q ss_pred CCCCcEEEecCCCCC-Ccchhh----hccCcccEEeccCCCCcccchhhh-------------cccccCCEEecCCCCCc
Q 040556 1 MKFLQELLLDGTDIK-GLPLSI----VLLSGIVQLDLKGCKNISCLSNFI-------------SALKFLSTLNLSDGTAI 62 (128)
Q Consensus 1 l~~L~~l~l~~~~~~-~~~~~~----~~l~~L~~l~l~~~~~~~~~~~~~-------------~~l~~L~~L~l~~~~~~ 62 (128)
|++|+.++++.|.+. ..|..+ ..-+.+..|.+.+|.+.......+ .+-|.|+....++|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 455666666666665 333322 334556666666665332211111 12345566666555542
Q ss_pred cc----chhhhhhcCCCcEEeecCCcccCc-----chHHhhcCCCCcEEeeecCCCC
Q 040556 63 RE----LSLSVELLTGLVVLNLKDWQYLSS-----LPSTINGLKSLKILNLSSCSKL 110 (128)
Q Consensus 63 ~~----~~~~~~~l~~L~~l~l~~~~~~~~-----~~~~~~~~~~L~~l~l~~n~~~ 110 (128)
.. ....+..-..|+...+.+|.+... .-..+..+.+|..|++.+|-++
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 21 111222223455555555543321 0111234456666666666543
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.60 E-value=0.0016 Score=44.96 Aligned_cols=92 Identities=25% Similarity=0.270 Sum_probs=51.3
Q ss_pred hhhhccCcccEEeccCC-CCcccch----hhhcccccCCEEecCCCC-Ccccchhhhh-hcCCCcEEeecCCcc-cC-cc
Q 040556 19 LSIVLLSGIVQLDLKGC-KNISCLS----NFISALKFLSTLNLSDGT-AIRELSLSVE-LLTGLVVLNLKDWQY-LS-SL 89 (128)
Q Consensus 19 ~~~~~l~~L~~l~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~~~-~~~~~~~~~~-~l~~L~~l~l~~~~~-~~-~~ 89 (128)
.....+++|+.++++++ ......+ .....+..++.++++.+. ++...-..+. .|++|+.+.+.+|.. .. .+
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 34456777888887762 2222211 122345677777777766 3333323332 367788887666652 22 12
Q ss_pred hHHhhcCCCCcEEeeecCCCC
Q 040556 90 PSTINGLKSLKILNLSSCSKL 110 (128)
Q Consensus 90 ~~~~~~~~~L~~l~l~~n~~~ 110 (128)
......++.|+++++++|...
T Consensus 288 ~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHHHhcCcccEEeeecCccc
Confidence 233345677888888877653
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.43 E-value=0.0031 Score=22.88 Aligned_cols=14 Identities=21% Similarity=0.257 Sum_probs=5.7
Q ss_pred CCcEEEecCCCCCC
Q 040556 3 FLQELLLDGTDIKG 16 (128)
Q Consensus 3 ~L~~l~l~~~~~~~ 16 (128)
+|+.|++++|.+++
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 45555555555443
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.13 E-value=0.0073 Score=24.31 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=14.3
Q ss_pred CCCCcEEEecCCCCCCcchhh
Q 040556 1 MKFLQELLLDGTDIKGLPLSI 21 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~ 21 (128)
+++|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 456777777777777776543
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.13 E-value=0.0073 Score=24.31 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=14.3
Q ss_pred CCCCcEEEecCCCCCCcchhh
Q 040556 1 MKFLQELLLDGTDIKGLPLSI 21 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~ 21 (128)
+++|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 456777777777777776543
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.0083 Score=37.12 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=46.6
Q ss_pred cccEEeccCCCCcccchhhhcccccCCEEecCCCCCccc-chhhhh-hcCCCcEEeecCCcccCc-chHHhhcCCCCcEE
Q 040556 26 GIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRE-LSLSVE-LLTGLVVLNLKDWQYLSS-LPSTINGLKSLKIL 102 (128)
Q Consensus 26 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~-~l~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l 102 (128)
.++.++-+++.+..+.-..+..+.+++.|.+.+|...+. ....++ -.++|+.|++++|.-... -...+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 466677777766655555666777777777777655331 111122 346777888877653332 22334566666666
Q ss_pred eeec
Q 040556 103 NLSS 106 (128)
Q Consensus 103 ~l~~ 106 (128)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6643
No 73
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.65 E-value=0.01 Score=40.53 Aligned_cols=87 Identities=23% Similarity=0.364 Sum_probs=40.7
Q ss_pred ccCcccEEeccCCCCcccch-hhh-cccccCCEEecCCCCCccc--chhhhhhcCCCcEEeecCCcccCcc-----hHHh
Q 040556 23 LLSGIVQLDLKGCKNISCLS-NFI-SALKFLSTLNLSDGTAIRE--LSLSVELLTGLVVLNLKDWQYLSSL-----PSTI 93 (128)
Q Consensus 23 ~l~~L~~l~l~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~l~l~~~~~~~~~-----~~~~ 93 (128)
.+.+|+.+.+..|+..+... ..+ .++++|+.+++.++..... +.....+++.|+.+.++.|...... ...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 34566666666665322211 111 2355666666666544322 1222235666666666655433321 1111
Q ss_pred hcCCCCcEEeeecCCC
Q 040556 94 NGLKSLKILNLSSCSK 109 (128)
Q Consensus 94 ~~~~~L~~l~l~~n~~ 109 (128)
..+..+..+.+++++.
T Consensus 398 c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPL 413 (483)
T ss_pred ccccccceeeecCCCC
Confidence 2334555666665554
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.51 E-value=0.021 Score=39.52 Aligned_cols=106 Identities=25% Similarity=0.277 Sum_probs=66.7
Q ss_pred ccCcccEEeccCCCCccc--chhhhcccccCCEEecCCC-CCcccc----hhhhhhcCCCcEEeecCCc-ccCcchHHhh
Q 040556 23 LLSGIVQLDLKGCKNISC--LSNFISALKFLSTLNLSDG-TAIREL----SLSVELLTGLVVLNLKDWQ-YLSSLPSTIN 94 (128)
Q Consensus 23 ~l~~L~~l~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~ 94 (128)
.++.++.+.+.++..... .-.....++.|+.|+++++ ...... ......+..++.++++.+. +....-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 468888888888865554 3344567889999999873 222111 2234456889999999887 3333223333
Q ss_pred -cCCCCcEEeeecCC-CCCC-CCcCcCCCCCCCcccC
Q 040556 95 -GLKSLKILNLSSCS-KLEN-VPENLGKVESLEELDI 128 (128)
Q Consensus 95 -~~~~L~~l~l~~n~-~~~~-~~~~~~~~~~L~~l~l 128 (128)
.+++|+++.+.+|. +++. +......++.|+++++
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l 302 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDL 302 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEee
Confidence 47899999987777 3332 2223445667777764
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.23 E-value=0.0094 Score=36.89 Aligned_cols=78 Identities=23% Similarity=0.335 Sum_probs=51.9
Q ss_pred ccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcc-hHHhhc-CCCCcEEeeecCCCCCCC-CcCcCCCCCCCc
Q 040556 49 KFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSL-PSTING-LKSLKILNLSSCSKLENV-PENLGKVESLEE 125 (128)
Q Consensus 49 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~-~~~L~~l~l~~n~~~~~~-~~~~~~~~~L~~ 125 (128)
..++.++.++..+..+-...+..++.++.+.+.+|...... -+-+++ ..+|+.|++++|.-.++- -..+.++++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 34678888887777666677788889999999988755532 122333 468999999999854332 222445555554
Q ss_pred c
Q 040556 126 L 126 (128)
Q Consensus 126 l 126 (128)
+
T Consensus 181 L 181 (221)
T KOG3864|consen 181 L 181 (221)
T ss_pred H
Confidence 4
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.79 E-value=0.04 Score=21.59 Aligned_cols=7 Identities=57% Similarity=0.824 Sum_probs=2.2
Q ss_pred CEEecCC
Q 040556 52 STLNLSD 58 (128)
Q Consensus 52 ~~L~l~~ 58 (128)
+.|++++
T Consensus 5 ~~L~l~~ 11 (24)
T PF13516_consen 5 ETLDLSN 11 (24)
T ss_dssp SEEE-TS
T ss_pred CEEEccC
Confidence 3333333
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.88 E-value=0.0011 Score=41.93 Aligned_cols=89 Identities=18% Similarity=0.072 Sum_probs=62.5
Q ss_pred hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCC
Q 040556 20 SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSL 99 (128)
Q Consensus 20 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 99 (128)
.+..+...+.+|++.|+. ......|+.++.+..++++.|.+. ..|..++....+++++...|. +...|...+..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccc-hhhCCccccccCCc
Confidence 456677888888888873 334455777788888888876543 456777777777777776654 55667777778888
Q ss_pred cEEeeecCCCCC
Q 040556 100 KILNLSSCSKLE 111 (128)
Q Consensus 100 ~~l~l~~n~~~~ 111 (128)
++++.-++++..
T Consensus 114 k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 114 KKNEQKKTEFFR 125 (326)
T ss_pred chhhhccCcchH
Confidence 888877776543
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=91.70 E-value=0.18 Score=20.42 Aligned_cols=14 Identities=43% Similarity=0.430 Sum_probs=8.1
Q ss_pred CCCcEEEecCCCCC
Q 040556 2 KFLQELLLDGTDIK 15 (128)
Q Consensus 2 ~~L~~l~l~~~~~~ 15 (128)
++|++|+++.|+++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45556666666554
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.14 E-value=0.006 Score=38.80 Aligned_cols=81 Identities=15% Similarity=0.091 Sum_probs=53.6
Q ss_pred CcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCC
Q 040556 4 LQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDW 83 (128)
Q Consensus 4 L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 83 (128)
.+.|+++.|+.-.....|..++.+..++++.|. ....|..+.....+..+++..|. ....|.+++..+.+++++.-.+
T Consensus 44 ~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 44 VTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred eeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhhhccC
Confidence 345666666655555556667778888888776 55566666666666666666644 3446667777788888877776
Q ss_pred ccc
Q 040556 84 QYL 86 (128)
Q Consensus 84 ~~~ 86 (128)
.+.
T Consensus 122 ~~~ 124 (326)
T KOG0473|consen 122 EFF 124 (326)
T ss_pred cch
Confidence 643
No 80
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.41 E-value=0.084 Score=36.37 Aligned_cols=85 Identities=27% Similarity=0.353 Sum_probs=53.5
Q ss_pred CcccEEeccCCCCcccch--hhhcccccCCEEecCCCCCccc--chhhhhhcCCCcEEeecCCcccCc-chH-HhhcCCC
Q 040556 25 SGIVQLDLKGCKNISCLS--NFISALKFLSTLNLSDGTAIRE--LSLSVELLTGLVVLNLKDWQYLSS-LPS-TINGLKS 98 (128)
Q Consensus 25 ~~L~~l~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~l~l~~~~~~~~-~~~-~~~~~~~ 98 (128)
..|+.+.+++++-.+..+ ..-..+++++.|++.+|...+. ....-..|+.++++++..|..... .-+ ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357778888887555443 2335678888888888764432 123334677888888887543332 222 2346778
Q ss_pred CcEEeeecCCC
Q 040556 99 LKILNLSSCSK 109 (128)
Q Consensus 99 L~~l~l~~n~~ 109 (128)
|.++++++|..
T Consensus 218 L~~lNlSwc~q 228 (483)
T KOG4341|consen 218 LKYLNLSWCPQ 228 (483)
T ss_pred HHHhhhccCch
Confidence 88888888764
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.01 E-value=0.71 Score=18.80 Aligned_cols=10 Identities=40% Similarity=0.571 Sum_probs=4.4
Q ss_pred ccEEeccCCC
Q 040556 27 IVQLDLKGCK 36 (128)
Q Consensus 27 L~~l~l~~~~ 36 (128)
|++|++++|.
T Consensus 4 L~~LdL~~N~ 13 (28)
T smart00368 4 LRELDLSNNK 13 (28)
T ss_pred cCEEECCCCC
Confidence 4444444444
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.15 E-value=0.82 Score=18.52 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=7.7
Q ss_pred CCcEEEecCCCCCCcc
Q 040556 3 FLQELLLDGTDIKGLP 18 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~ 18 (128)
+|+.|+.++|.++.+|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 3444555555544444
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.16 E-value=1.2 Score=17.68 Aligned_cols=10 Identities=40% Similarity=0.371 Sum_probs=4.7
Q ss_pred cCCEEecCCC
Q 040556 50 FLSTLNLSDG 59 (128)
Q Consensus 50 ~L~~L~l~~~ 59 (128)
+|+.|++++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 4444444444
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.88 E-value=2.7 Score=30.39 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=15.7
Q ss_pred cCcccEEeccCCCCcccc--hhhhcccccCCEEecCCC
Q 040556 24 LSGIVQLDLKGCKNISCL--SNFISALKFLSTLNLSDG 59 (128)
Q Consensus 24 l~~L~~l~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~ 59 (128)
.+.+..+.+++|++-... ...-...+++..|+|+.|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344555555555533221 111123445555555554
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.70 E-value=2.1 Score=30.86 Aligned_cols=66 Identities=20% Similarity=0.121 Sum_probs=42.1
Q ss_pred ccccCCEEecCCCCCcc--cchhhhhhcCCCcEEeecCCcccCcchHHhhc--CCCCcEEeeecCCCCCC
Q 040556 47 ALKFLSTLNLSDGTAIR--ELSLSVELLTGLVVLNLKDWQYLSSLPSTING--LKSLKILNLSSCSKLEN 112 (128)
Q Consensus 47 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~--~~~L~~l~l~~n~~~~~ 112 (128)
+.+.+..+++++|++.. .+..-....|++..|++++|...-....++.. ...|+++.+.||++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 46778888899988743 23333445689999999998221111222332 34578899999987543
No 86
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=59.16 E-value=6 Score=14.89 Aligned_cols=16 Identities=25% Similarity=0.127 Sum_probs=9.7
Q ss_pred CCcEEEecCCCCCCcc
Q 040556 3 FLQELLLDGTDIKGLP 18 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~ 18 (128)
+|..|+|.+.+++.++
T Consensus 1 ~LVeL~m~~S~lekLW 16 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLW 16 (20)
T ss_pred CcEEEECCCCChHHhc
Confidence 3556777776665544
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=49.30 E-value=1.5 Score=31.22 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=17.6
Q ss_pred CCCcEEeecCCcccCc----chHHhhcCCCCcEEeeecCCC
Q 040556 73 TGLVVLNLKDWQYLSS----LPSTINGLKSLKILNLSSCSK 109 (128)
Q Consensus 73 ~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~ 109 (128)
..++.+++..|++... +.+.+..+..++++.++.|.+
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 3445555555554442 222333444555555555544
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=42.59 E-value=22 Score=31.29 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=25.3
Q ss_pred EecCCCCCCcch-hhhccCcccEEeccCCCCccc
Q 040556 8 LLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISC 40 (128)
Q Consensus 8 ~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~ 40 (128)
+|++|.+..++. .|..+++|+.|+|++|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 467888887765 566788899999998876643
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.60 E-value=33 Score=30.34 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=26.9
Q ss_pred eccCCCCcccchhhhcccccCCEEecCCCCCc
Q 040556 31 DLKGCKNISCLSNFISALKFLSTLNLSDGTAI 62 (128)
Q Consensus 31 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 62 (128)
||++|++....+..|..+++|+.|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889877777788888999999999998764
No 90
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=28.87 E-value=31 Score=13.92 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=8.0
Q ss_pred hhccCcccEEecc
Q 040556 21 IVLLSGIVQLDLK 33 (128)
Q Consensus 21 ~~~l~~L~~l~l~ 33 (128)
+..+++|+.||..
T Consensus 9 i~~LPqL~~LD~~ 21 (26)
T smart00446 9 IRLLPQLRKLDXX 21 (26)
T ss_pred HHHCCccceeccc
Confidence 3456677776654
Done!