Query 040556
Match_columns 128
No_of_seqs 119 out of 1281
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 15:19:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 2.7E-21 9.1E-26 125.6 10.8 127 1-128 182-308 (328)
2 2v9t_B SLIT homolog 2 protein 99.8 1.7E-20 5.8E-25 115.7 11.2 127 2-128 32-159 (220)
3 2v70_A SLIT-2, SLIT homolog 2 99.8 3E-20 1E-24 114.6 11.4 126 3-128 33-160 (220)
4 4fcg_A Uncharacterized protein 99.8 2.1E-20 7.1E-25 121.4 9.8 124 2-127 127-259 (328)
5 3m19_A Variable lymphocyte rec 99.8 9.5E-20 3.3E-24 114.3 12.3 127 2-128 59-186 (251)
6 3rfs_A Internalin B, repeat mo 99.8 1E-19 3.4E-24 115.4 12.3 127 2-128 85-212 (272)
7 3e6j_A Variable lymphocyte rec 99.8 1.3E-19 4.6E-24 112.3 12.2 126 2-128 40-166 (229)
8 1ogq_A PGIP-2, polygalacturona 99.8 2.1E-20 7.2E-25 120.7 8.8 124 3-127 102-227 (313)
9 2je0_A Acidic leucine-rich nuc 99.8 3.1E-20 1E-24 108.1 8.4 125 2-128 17-147 (149)
10 3rfs_A Internalin B, repeat mo 99.8 1.8E-19 6.1E-24 114.2 12.4 127 1-128 62-188 (272)
11 2o6s_A Variable lymphocyte rec 99.8 3E-19 1E-23 109.1 12.3 127 2-128 28-155 (208)
12 1ogq_A PGIP-2, polygalacturona 99.8 3.7E-20 1.3E-24 119.5 8.4 126 3-128 51-181 (313)
13 3rgz_A Protein brassinosteroid 99.8 9.9E-20 3.4E-24 129.2 11.2 126 2-127 418-544 (768)
14 3m19_A Variable lymphocyte rec 99.8 3.4E-19 1.2E-23 111.7 12.1 127 2-128 35-162 (251)
15 4g8a_A TOLL-like receptor 4; l 99.8 1.4E-19 4.8E-24 125.3 10.6 126 3-128 53-180 (635)
16 2ell_A Acidic leucine-rich nuc 99.8 1.8E-19 6.1E-24 106.8 9.6 125 2-128 24-154 (168)
17 2o6q_A Variable lymphocyte rec 99.8 6E-19 2.1E-23 111.7 12.3 124 3-126 62-186 (270)
18 1ozn_A Reticulon 4 receptor; N 99.8 4.4E-19 1.5E-23 113.0 11.2 105 22-126 102-206 (285)
19 4ezg_A Putative uncharacterize 99.8 5.9E-19 2E-23 107.1 11.3 122 2-127 66-187 (197)
20 3rgz_A Protein brassinosteroid 99.8 2.9E-19 1E-23 126.8 11.0 127 2-128 394-521 (768)
21 1w8a_A SLIT protein; signaling 99.8 3E-19 1E-23 108.1 9.5 122 5-128 11-133 (192)
22 2o6q_A Variable lymphocyte rec 99.8 1.2E-18 4.2E-23 110.2 12.4 128 1-128 84-212 (270)
23 1ozn_A Reticulon 4 receptor; N 99.8 7E-19 2.4E-23 112.0 11.2 125 3-127 33-159 (285)
24 1p9a_G Platelet glycoprotein I 99.8 1.1E-18 3.7E-23 111.6 11.9 126 2-128 77-202 (290)
25 3vq2_A TLR4, TOLL-like recepto 99.8 4.2E-19 1.4E-23 122.9 10.2 127 2-128 32-160 (606)
26 4ezg_A Putative uncharacterize 99.8 5.5E-19 1.9E-23 107.2 9.5 123 2-128 44-166 (197)
27 3v47_A TOLL-like receptor 5B a 99.8 1E-18 3.6E-23 117.3 11.8 127 2-128 275-402 (455)
28 2z62_A TOLL-like receptor 4, v 99.8 7.2E-19 2.5E-23 111.5 10.1 126 3-128 29-156 (276)
29 4eco_A Uncharacterized protein 99.8 1.6E-19 5.5E-24 126.0 7.2 126 1-128 205-360 (636)
30 2z66_A Variable lymphocyte rec 99.8 1.6E-18 5.5E-23 111.3 10.7 127 2-128 126-255 (306)
31 2z66_A Variable lymphocyte rec 99.8 8.1E-19 2.8E-23 112.7 8.9 127 2-128 101-230 (306)
32 2v9t_B SLIT homolog 2 protein 99.8 3.9E-18 1.3E-22 105.2 10.7 122 5-128 14-135 (220)
33 3v47_A TOLL-like receptor 5B a 99.8 3E-18 1E-22 115.1 10.3 127 2-128 30-161 (455)
34 1p9a_G Platelet glycoprotein I 99.8 4.2E-18 1.4E-22 108.9 10.5 124 3-128 56-179 (290)
35 4ecn_A Leucine-rich repeat pro 99.8 1.9E-18 6.6E-23 123.8 9.6 125 1-128 447-602 (876)
36 2wfh_A SLIT homolog 2 protein 99.8 8.7E-18 3E-22 101.7 11.2 119 6-127 14-132 (193)
37 3o6n_A APL1; leucine-rich repe 99.8 3.8E-18 1.3E-22 112.8 10.3 127 2-128 45-172 (390)
38 1ziw_A TOLL-like receptor 3; i 99.8 6.8E-18 2.3E-22 118.2 12.1 127 2-128 25-152 (680)
39 2wfh_A SLIT homolog 2 protein 99.8 7.9E-18 2.7E-22 101.9 10.6 109 2-110 31-139 (193)
40 1w8a_A SLIT protein; signaling 99.8 4.2E-18 1.4E-22 103.0 9.3 110 3-112 30-141 (192)
41 1a9n_A U2A', U2A'; complex (nu 99.8 4.8E-18 1.6E-22 101.4 9.4 123 1-128 18-147 (176)
42 2xot_A Amphoterin-induced prot 99.8 5.2E-18 1.8E-22 111.4 10.4 126 3-128 40-170 (361)
43 2v70_A SLIT-2, SLIT homolog 2 99.8 6.5E-18 2.2E-22 104.2 10.1 111 1-111 56-167 (220)
44 2id5_A Lingo-1, leucine rich r 99.8 3.3E-18 1.1E-22 115.7 9.2 124 3-126 33-157 (477)
45 3vq2_A TLR4, TOLL-like recepto 99.8 2.1E-18 7.2E-23 119.4 8.5 125 3-127 400-527 (606)
46 4eco_A Uncharacterized protein 99.8 1.3E-18 4.3E-23 121.5 7.3 112 16-128 197-337 (636)
47 2id5_A Lingo-1, leucine rich r 99.8 5.4E-18 1.9E-22 114.6 9.9 128 1-128 55-183 (477)
48 2o6r_A Variable lymphocyte rec 99.8 2.3E-17 7.7E-22 98.5 11.5 121 5-127 10-130 (177)
49 1wwl_A Monocyte differentiatio 99.8 1E-17 3.4E-22 108.1 10.5 128 1-128 120-260 (312)
50 3t6q_A CD180 antigen; protein- 99.8 8.7E-18 3E-22 116.3 10.7 127 2-128 33-160 (606)
51 3oja_B Anopheles plasmodium-re 99.8 8.3E-18 2.8E-22 116.6 10.5 127 2-128 51-178 (597)
52 2z63_A TOLL-like receptor 4, v 99.8 8.5E-18 2.9E-22 115.5 10.5 127 2-128 28-156 (570)
53 3e6j_A Variable lymphocyte rec 99.8 1.5E-17 5.2E-22 103.0 10.6 122 4-128 21-142 (229)
54 2z62_A TOLL-like receptor 4, v 99.7 4.1E-18 1.4E-22 108.0 8.0 124 1-124 51-176 (276)
55 2z81_A CD282 antigen, TOLL-lik 99.7 5.6E-18 1.9E-22 116.1 9.1 126 2-127 26-154 (549)
56 1dce_A Protein (RAB geranylger 99.7 1.5E-17 5.2E-22 114.8 11.1 122 3-128 442-567 (567)
57 2z63_A TOLL-like receptor 4, v 99.7 6.7E-18 2.3E-22 116.0 9.3 128 1-128 395-525 (570)
58 3t6q_A CD180 antigen; protein- 99.7 1.6E-17 5.6E-22 115.0 10.4 126 2-127 278-406 (606)
59 2z80_A TOLL-like receptor 2, v 99.7 1.1E-17 3.7E-22 109.4 9.0 124 3-127 53-180 (353)
60 2z81_A CD282 antigen, TOLL-lik 99.7 5.6E-18 1.9E-22 116.1 7.8 127 1-127 49-178 (549)
61 2z80_A TOLL-like receptor 2, v 99.7 8E-18 2.7E-22 110.0 7.7 128 1-128 75-205 (353)
62 2z7x_B TOLL-like receptor 1, v 99.7 1.9E-17 6.5E-22 112.9 9.6 106 3-111 22-129 (520)
63 4fmz_A Internalin; leucine ric 99.7 1.3E-16 4.5E-21 103.9 13.0 121 1-128 220-340 (347)
64 3j0a_A TOLL-like receptor 5; m 99.7 1.5E-17 5.3E-22 119.1 9.1 127 2-128 24-155 (844)
65 3o6n_A APL1; leucine-rich repe 99.7 5.8E-17 2E-21 107.2 10.9 123 1-126 68-191 (390)
66 2o6s_A Variable lymphocyte rec 99.7 1.1E-16 3.8E-21 97.7 11.1 111 1-111 51-162 (208)
67 3zyi_A Leucine-rich repeat-con 99.7 5E-17 1.7E-21 109.4 10.4 106 3-108 76-182 (452)
68 1h6t_A Internalin B; cell adhe 99.7 2.8E-16 9.7E-21 100.5 13.0 102 2-110 68-169 (291)
69 3zyi_A Leucine-rich repeat-con 99.7 1E-16 3.5E-21 107.9 11.5 125 2-128 147-297 (452)
70 3oja_B Anopheles plasmodium-re 99.7 6.5E-17 2.2E-21 112.1 10.8 123 1-126 74-197 (597)
71 3zyj_A Leucine-rich repeat-con 99.7 7E-17 2.4E-21 108.4 10.6 104 3-106 65-169 (440)
72 2xot_A Amphoterin-induced prot 99.7 2.6E-17 8.9E-22 108.1 8.2 122 1-122 63-188 (361)
73 4ecn_A Leucine-rich repeat pro 99.7 2.9E-17 9.8E-22 117.8 8.7 124 1-128 490-626 (876)
74 2xwt_C Thyrotropin receptor; s 99.7 2E-17 6.8E-22 102.9 6.8 123 3-127 32-162 (239)
75 2o6r_A Variable lymphocyte rec 99.7 1.5E-16 5.2E-21 94.9 10.2 112 2-113 28-140 (177)
76 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 7.7E-17 2.6E-21 111.0 9.9 106 3-111 53-160 (562)
77 4g8a_A TOLL-like receptor 4; l 99.7 1.2E-16 4E-21 110.8 10.7 127 2-128 445-574 (635)
78 3zyj_A Leucine-rich repeat-con 99.7 1.1E-16 3.9E-21 107.4 10.3 35 3-37 113-148 (440)
79 1xku_A Decorin; proteoglycan, 99.7 3E-16 1E-20 101.7 11.8 85 26-111 193-277 (330)
80 2z7x_B TOLL-like receptor 1, v 99.7 1E-16 3.6E-21 109.3 10.0 125 2-128 324-475 (520)
81 1ziw_A TOLL-like receptor 3; i 99.7 5.6E-17 1.9E-21 113.7 8.6 111 2-112 49-160 (680)
82 3g39_A Variable lymphocyte rec 99.7 1.7E-16 5.7E-21 94.3 9.5 106 4-111 11-116 (170)
83 4b8c_D Glucose-repressible alc 99.7 2.4E-17 8.1E-22 116.6 6.7 107 3-112 225-331 (727)
84 1wwl_A Monocyte differentiatio 99.7 9.8E-18 3.3E-22 108.1 4.2 127 1-128 94-235 (312)
85 3j0a_A TOLL-like receptor 5; m 99.7 7.1E-17 2.4E-21 115.7 9.0 126 1-126 47-179 (844)
86 1h6t_A Internalin B; cell adhe 99.7 6.3E-16 2.2E-20 98.9 12.5 119 1-128 89-207 (291)
87 2ast_B S-phase kinase-associat 99.7 6E-17 2.1E-21 105.0 7.9 126 2-127 118-253 (336)
88 1h6u_A Internalin H; cell adhe 99.7 5.6E-16 1.9E-20 99.8 12.2 119 2-127 85-223 (308)
89 1h6u_A Internalin H; cell adhe 99.7 8.6E-16 2.9E-20 98.9 12.9 119 1-128 62-180 (308)
90 2ell_A Acidic leucine-rich nuc 99.7 2.2E-16 7.7E-21 93.4 9.5 113 1-115 48-164 (168)
91 1xku_A Decorin; proteoglycan, 99.7 5.5E-16 1.9E-20 100.5 12.1 125 3-128 122-270 (330)
92 1xeu_A Internalin C; cellular 99.7 8.1E-16 2.8E-20 97.1 11.8 115 3-127 64-178 (263)
93 2je0_A Acidic leucine-rich nuc 99.7 3.5E-16 1.2E-20 90.8 9.4 104 1-105 41-148 (149)
94 3o53_A Protein LRIM1, AGAP0063 99.7 4.2E-16 1.4E-20 100.7 10.3 123 2-128 120-244 (317)
95 3oja_A Leucine-rich immune mol 99.7 3E-16 1E-20 106.7 10.0 123 2-128 120-244 (487)
96 2r9u_A Variable lymphocyte rec 99.7 4.8E-16 1.6E-20 92.7 9.5 105 5-111 15-119 (174)
97 4b8c_D Glucose-repressible alc 99.7 2.1E-16 7.1E-21 111.8 9.1 108 17-128 216-323 (727)
98 1m9s_A Internalin B; cell inva 99.7 1.2E-15 4.1E-20 106.0 12.7 119 2-127 65-203 (605)
99 1m9s_A Internalin B; cell inva 99.7 1.2E-15 4.1E-20 106.1 12.6 105 1-112 108-212 (605)
100 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 6E-16 2E-20 106.6 10.6 120 4-128 33-153 (562)
101 2xwt_C Thyrotropin receptor; s 99.7 8.9E-17 3E-21 100.0 5.6 125 2-127 55-211 (239)
102 2ft3_A Biglycan; proteoglycan, 99.7 1.3E-15 4.3E-20 98.9 11.0 122 2-127 54-178 (332)
103 1xeu_A Internalin C; cellular 99.7 1.5E-15 5E-20 95.9 10.6 118 1-128 40-157 (263)
104 4glp_A Monocyte differentiatio 99.7 3.4E-16 1.2E-20 100.8 7.7 124 3-127 118-257 (310)
105 1o6v_A Internalin A; bacterial 99.7 3.4E-15 1.2E-19 100.8 12.9 116 3-127 266-381 (466)
106 2ast_B S-phase kinase-associat 99.7 7.3E-16 2.5E-20 99.9 9.0 128 1-128 141-279 (336)
107 2ft3_A Biglycan; proteoglycan, 99.7 9.9E-16 3.4E-20 99.4 9.6 121 3-128 34-154 (332)
108 4fmz_A Internalin; leucine ric 99.6 2E-15 6.9E-20 98.3 11.0 118 4-128 201-318 (347)
109 1o6v_A Internalin A; bacterial 99.6 8.8E-15 3E-19 98.8 13.1 117 3-128 244-360 (466)
110 4glp_A Monocyte differentiatio 99.6 7.9E-16 2.7E-20 99.1 7.7 125 1-128 144-279 (310)
111 1ds9_A Outer arm dynein; leuci 99.6 8.1E-18 2.8E-22 102.1 -1.6 123 1-127 47-180 (198)
112 3oja_A Leucine-rich immune mol 99.6 1.1E-15 3.9E-20 103.8 8.6 122 2-128 99-221 (487)
113 2ca6_A RAN GTPase-activating p 99.6 8.7E-16 3E-20 101.5 5.9 16 21-36 118-133 (386)
114 3o53_A Protein LRIM1, AGAP0063 99.6 3.5E-15 1.2E-19 96.4 8.0 122 2-128 99-221 (317)
115 1a9n_A U2A', U2A'; complex (nu 99.6 6.4E-15 2.2E-19 87.8 8.5 105 2-109 42-152 (176)
116 2ca6_A RAN GTPase-activating p 99.6 2.2E-15 7.6E-20 99.5 6.0 127 2-128 159-310 (386)
117 3bz5_A Internalin-J, INLJ; leu 99.6 4.2E-14 1.4E-18 95.5 10.8 113 2-127 42-154 (457)
118 1z7x_W Ribonuclease inhibitor; 99.6 2.1E-15 7.3E-20 101.4 4.5 126 2-127 256-404 (461)
119 3goz_A Leucine-rich repeat-con 99.6 1.1E-14 3.9E-19 95.5 7.3 84 4-87 24-123 (362)
120 2ifg_A High affinity nerve gro 99.6 3.4E-14 1.1E-18 92.7 9.5 103 6-110 12-116 (347)
121 3bz5_A Internalin-J, INLJ; leu 99.5 7.5E-14 2.6E-18 94.3 11.0 113 1-126 63-175 (457)
122 3g39_A Variable lymphocyte rec 99.5 6E-14 2E-18 83.2 8.8 100 26-128 10-109 (170)
123 3goz_A Leucine-rich repeat-con 99.5 1.3E-14 4.3E-19 95.3 6.3 109 3-111 52-181 (362)
124 1dce_A Protein (RAB geranylger 99.5 1.2E-13 4.2E-18 95.4 11.2 102 1-104 462-567 (567)
125 2r9u_A Variable lymphocyte rec 99.5 1.1E-13 3.7E-18 82.5 8.8 99 27-128 14-112 (174)
126 1ds9_A Outer arm dynein; leuci 99.5 1.3E-15 4.4E-20 92.4 -0.8 111 13-128 36-147 (198)
127 3cvr_A Invasion plasmid antige 99.5 4E-13 1.4E-17 92.9 10.5 93 4-111 82-174 (571)
128 1z7x_W Ribonuclease inhibitor; 99.5 5.2E-14 1.8E-18 94.6 5.0 83 3-85 200-296 (461)
129 3cvr_A Invasion plasmid antige 99.5 3E-13 1E-17 93.5 8.3 109 4-128 122-237 (571)
130 1jl5_A Outer protein YOPM; leu 99.4 6.5E-13 2.2E-17 89.7 9.7 112 3-127 132-243 (454)
131 4ay9_X Follicle-stimulating ho 99.4 1.1E-12 3.6E-17 85.8 7.0 105 3-107 31-138 (350)
132 2ifg_A High affinity nerve gro 99.4 4.1E-12 1.4E-16 82.8 8.8 97 29-128 12-110 (347)
133 1jl5_A Outer protein YOPM; leu 99.4 5.5E-12 1.9E-16 85.2 9.4 109 3-126 92-200 (454)
134 3g06_A SSPH2 (leucine-rich rep 99.3 1.1E-11 3.6E-16 86.6 10.3 71 49-128 221-291 (622)
135 4ay9_X Follicle-stimulating ho 99.3 2.6E-12 9E-17 84.0 6.6 117 5-123 12-130 (350)
136 3un9_A NLR family member X1; l 99.3 6.4E-13 2.2E-17 87.7 3.7 125 3-127 102-245 (372)
137 3g06_A SSPH2 (leucine-rich rep 99.3 4E-12 1.4E-16 88.7 5.9 82 25-115 221-302 (622)
138 3sb4_A Hypothetical leucine ri 99.3 4.4E-11 1.5E-15 77.5 9.7 102 24-127 225-327 (329)
139 3ogk_B Coronatine-insensitive 99.2 5.5E-12 1.9E-16 87.2 4.2 92 21-112 432-528 (592)
140 3ogk_B Coronatine-insensitive 99.2 1.1E-11 3.9E-16 85.6 5.7 34 93-126 289-323 (592)
141 3un9_A NLR family member X1; l 99.2 4.7E-12 1.6E-16 83.6 3.2 127 2-128 72-218 (372)
142 2p1m_B Transport inhibitor res 99.1 2.4E-11 8.2E-16 84.0 3.4 105 3-107 106-221 (594)
143 3sb4_A Hypothetical leucine ri 99.1 3.6E-10 1.2E-14 73.2 7.8 102 1-104 225-328 (329)
144 2p1m_B Transport inhibitor res 99.1 1.3E-10 4.4E-15 80.3 5.1 82 45-127 428-512 (594)
145 1io0_A Tropomodulin; LRR prote 99.1 5.5E-10 1.9E-14 67.0 7.2 108 2-109 36-163 (185)
146 3rw6_A Nuclear RNA export fact 98.9 3.1E-10 1.1E-14 71.7 2.4 79 47-127 168-257 (267)
147 3e4g_A ATP synthase subunit S, 98.9 2.9E-09 1E-13 63.2 6.2 88 24-111 60-153 (176)
148 1io0_A Tropomodulin; LRR prote 98.9 2.3E-09 7.8E-14 64.3 4.8 110 19-128 30-158 (185)
149 4fdw_A Leucine rich hypothetic 98.9 3E-08 1E-12 66.1 9.8 56 2-58 180-235 (401)
150 2ra8_A Uncharacterized protein 98.8 3.5E-09 1.2E-13 69.7 4.5 40 72-111 251-293 (362)
151 3rw6_A Nuclear RNA export fact 98.8 4E-08 1.4E-12 62.1 7.7 80 22-103 167-257 (267)
152 3e4g_A ATP synthase subunit S, 98.7 2.1E-08 7.1E-13 59.6 5.6 86 3-88 62-154 (176)
153 4fdw_A Leucine rich hypothetic 98.6 3E-07 1E-11 61.3 9.1 114 4-121 250-369 (401)
154 2ra8_A Uncharacterized protein 98.6 9.9E-08 3.4E-12 62.8 6.4 111 2-112 193-322 (362)
155 4h09_A Hypothetical leucine ri 98.3 1.6E-05 5.4E-10 52.4 10.1 103 21-126 236-338 (379)
156 4gt6_A Cell surface protein; l 98.2 1.2E-05 4.3E-10 53.2 8.6 86 20-108 283-368 (394)
157 4fs7_A Uncharacterized protein 98.0 3.5E-05 1.2E-09 51.1 7.9 102 20-126 292-393 (394)
158 4fs7_A Uncharacterized protein 97.9 5.9E-05 2E-09 50.0 8.0 81 44-127 292-372 (394)
159 4gt6_A Cell surface protein; l 97.9 0.0001 3.5E-09 48.9 8.9 104 20-127 260-363 (394)
160 1pgv_A TMD-1, tropomodulin TMD 97.9 9.3E-05 3.2E-09 44.7 7.7 80 3-82 42-135 (197)
161 4h09_A Hypothetical leucine ri 97.8 0.00012 4.3E-09 48.1 8.3 116 2-121 240-356 (379)
162 3rfe_A Platelet glycoprotein I 97.6 0.00028 9.5E-09 39.8 5.8 54 6-61 12-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00043 1.5E-08 41.8 6.8 85 23-107 39-136 (197)
164 3rfe_A Platelet glycoprotein I 96.9 0.0028 9.4E-08 35.6 5.5 58 28-87 11-69 (130)
165 2lz0_A Uncharacterized protein 84.9 1.2 4.1E-05 23.6 3.3 46 13-59 7-53 (100)
166 2lz0_A Uncharacterized protein 81.7 4.2 0.00014 21.4 4.7 47 36-83 7-53 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.7e-21 Score=125.59 Aligned_cols=127 Identities=29% Similarity=0.347 Sum_probs=114.3
Q ss_pred CCCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++|++|++++|.++.+|..+..+++|++|++++|.+.+ .|..+..+++|+.|++++|.+.+..|..++.+++|+.+++
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 467889999999999888889999999999999999665 5556889999999999999999988988999999999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+.+|..+.++++|+++++++|++.+.+|..++++++++.+++
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 999999999988999999999999999999999999999999887753
No 2
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=1.7e-20 Score=115.72 Aligned_cols=127 Identities=16% Similarity=0.172 Sum_probs=112.2
Q ss_pred CCCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++++|++++|.++.++. .+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+....+..+..+++|+.+++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 468999999999997765 6788999999999999988888888999999999999999988766666788999999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+++++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 999988877888999999999999999988877777888999988764
No 3
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=114.63 Aligned_cols=126 Identities=16% Similarity=0.159 Sum_probs=111.0
Q ss_pred CCcEEEecCCCCCCcc--hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 3 FLQELLLDGTDIKGLP--LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
.+++|++++|.++.++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 5678999999998763 34788999999999999988877778999999999999999998877778889999999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+..|..+..+++|++|++++|.+.+..|..++.+++|+++++
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 999988877888889999999999999988877888999999998865
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=2.1e-20 Score=121.42 Aligned_cols=124 Identities=27% Similarity=0.388 Sum_probs=65.1
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcc---------cccCCEEecCCCCCcccchhhhhhc
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISA---------LKFLSTLNLSDGTAIRELSLSVELL 72 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~l 72 (128)
++|++|++++|.+..+|..+..+++|++|++++|...+..|..+.. +++|+.|++++|.+. .+|..++.+
T Consensus 127 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l 205 (328)
T 4fcg_A 127 AGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL 205 (328)
T ss_dssp TTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC
T ss_pred CCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC
Confidence 3455555555555555555555555555555555444444433322 444445544444443 344445555
Q ss_pred CCCcEEeecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 73 TGLVVLNLKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 73 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
++|+++++++|.+.+ +|..++.+++|++|++++|++.+.+|..++.+++|++++
T Consensus 206 ~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 556666665555442 344455555566666665555555555555555555554
No 5
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=9.5e-20 Score=114.26 Aligned_cols=127 Identities=21% Similarity=0.134 Sum_probs=74.1
Q ss_pred CCCcEEEecCCCCCCcc-hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLP-LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
++|++|++++|.+..++ ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence 45556666666555443 23455566666666666655544455556666666666666555444444556666666666
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.+++
T Consensus 139 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 666655444445666666666666666665554445666666666543
No 6
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=1e-19 Score=115.39 Aligned_cols=127 Identities=23% Similarity=0.170 Sum_probs=80.0
Q ss_pred CCCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..++.+++|+.+++
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 456666666666665543 3456666666666666655555555666666777777766666544455566667777777
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+..+..+..+++|+++++++|.+.+..+..++.+++|+++++
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEc
Confidence 777665544445566677777777777766655555666677766653
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.3e-19 Score=112.30 Aligned_cols=126 Identities=21% Similarity=0.128 Sum_probs=109.0
Q ss_pred CCCcEEEecCCCCCCc-chhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGL-PLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
++|++|++++|.+..+ +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.+++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 4689999999999976 567889999999999999986666667889999999999999988766667888999999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.+++
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 999866 67888899999999999999987765567888999988764
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=2.1e-20 Score=120.66 Aligned_cols=124 Identities=16% Similarity=0.200 Sum_probs=58.2
Q ss_pred CCcEEEecCCCCC-CcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcC-CCcEEee
Q 040556 3 FLQELLLDGTDIK-GLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLT-GLVVLNL 80 (128)
Q Consensus 3 ~L~~l~l~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~l~l 80 (128)
+|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..++.++ .|+++++
T Consensus 102 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181 (313)
T ss_dssp TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC
T ss_pred CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEEC
Confidence 4444444444444 3344444444444444444444444444444444555555555444444444444444 4455555
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
++|.+.+..|..+..++ |+++++++|.+.+..+..++.+++|+.++
T Consensus 182 ~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 182 SRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227 (313)
T ss_dssp CSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred cCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence 44444444444444443 44444444444444444445555555443
No 9
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.83 E-value=3.1e-20 Score=108.12 Aligned_cols=125 Identities=22% Similarity=0.165 Sum_probs=108.2
Q ss_pred CCCcEEEecCCCCC--CcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 2 KFLQELLLDGTDIK--GLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 2 ~~L~~l~l~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
+++++|++++|.+. .+|..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..|..++.+++|++++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 46899999999998 7888888999999999999997766 6688899999999999999887888888899999999
Q ss_pred ecCCcccCc-chHHhhcCCCCcEEeeecCCCCCCCC---cCcCCCCCCCcccC
Q 040556 80 LKDWQYLSS-LPSTINGLKSLKILNLSSCSKLENVP---ENLGKVESLEELDI 128 (128)
Q Consensus 80 l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~L~~l~l 128 (128)
+++|.+.+. .+..++.+++|+++++++|.+.+..+ ..++.+++|+.+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 999987663 34778999999999999999776544 36888999998875
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=1.8e-19 Score=114.23 Aligned_cols=127 Identities=22% Similarity=0.207 Sum_probs=104.9
Q ss_pred CCCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++|++|++++|.+..++ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|+++++
T Consensus 62 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp CTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 467888999998888764 6778889999999999877777777788999999999999888766667888899999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|+++++
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 999877665666788899999999999887766666788888888764
No 11
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=3e-19 Score=109.10 Aligned_cols=127 Identities=25% Similarity=0.161 Sum_probs=106.6
Q ss_pred CCCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++++|++++|.++.++. .+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+++++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 468999999999997765 4678999999999999987766666788999999999999888766666788999999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+..+..+..+++|+++++++|.+.+..+..++.+++|+++++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEe
Confidence 999877666666788999999999999987765556888889888764
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=3.7e-20 Score=119.50 Aligned_cols=126 Identities=18% Similarity=0.253 Sum_probs=91.4
Q ss_pred CCcEEEecCCCCC---CcchhhhccCcccEEeccC-CCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEE
Q 040556 3 FLQELLLDGTDIK---GLPLSIVLLSGIVQLDLKG-CKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVL 78 (128)
Q Consensus 3 ~L~~l~l~~~~~~---~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 78 (128)
+++.|+++++.+. .+|..+..+++|++|++++ |.+.+..|..+..+++|++|++++|.+.+..|..++.+++|+++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 5667777777776 3567777777777777774 66666777777777777777777777776677777777777777
Q ss_pred eecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCC-CCCcccC
Q 040556 79 NLKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVE-SLEELDI 128 (128)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~-~L~~l~l 128 (128)
++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.++ +|+++++
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEEC
Confidence 7777777766777777777777777777777666677777666 6666653
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=9.9e-20 Score=129.24 Aligned_cols=126 Identities=28% Similarity=0.235 Sum_probs=74.3
Q ss_pred CCCcEEEecCCCCC-CcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIK-GLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|+++++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 44555555555554 34555555555666666655555555555555666666666666555555555666666666666
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
++|.+.+.+|..++.+++|+++++++|.+.+.+|..++.+++|+.++
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 66665555565566666666666666666555566666666665554
No 14
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=3.4e-19 Score=111.75 Aligned_cols=127 Identities=21% Similarity=0.147 Sum_probs=109.5
Q ss_pred CCCcEEEecCCCCCCcc-hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLP-LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
++++.|++++|.+..++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 45889999999998664 46888999999999999988888888899999999999999988777777889999999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|++
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 999877665666788999999999999987766667889999998875
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=1.4e-19 Score=125.28 Aligned_cols=126 Identities=25% Similarity=0.212 Sum_probs=108.9
Q ss_pred CCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 3 FLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
++++|++++|.++.++. .|..+++|++|++++|.+.+..+..|..+++|++|++++|++.+..+..|..+++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 68999999999998864 78999999999999999887777789999999999999999887767788999999999999
Q ss_pred CCcccCcchHHhhcCCCCcEEeeecCCCCC-CCCcCcCCCCCCCcccC
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSSCSKLE-NVPENLGKVESLEELDI 128 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~L~~l~l 128 (128)
+|.+.+..+..++++++|++|++++|.+.+ ..|..++.+++|+++++
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence 998776555568899999999999999765 45777888899888764
No 16
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.81 E-value=1.8e-19 Score=106.77 Aligned_cols=125 Identities=23% Similarity=0.217 Sum_probs=107.2
Q ss_pred CCCcEEEecCCCCC--CcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 2 KFLQELLLDGTDIK--GLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 2 ~~L~~l~l~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
+++++|++++|.+. .+|..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..|..+..+++|++++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 57899999999998 7888888999999999999997766 6688899999999999999887788888899999999
Q ss_pred ecCCcccCc-chHHhhcCCCCcEEeeecCCCCCCCC---cCcCCCCCCCcccC
Q 040556 80 LKDWQYLSS-LPSTINGLKSLKILNLSSCSKLENVP---ENLGKVESLEELDI 128 (128)
Q Consensus 80 l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~L~~l~l 128 (128)
+++|.+... .+..+..+++|+++++++|.+.+..+ ..+..+++|+++++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence 999987653 22678899999999999999776543 36888999998874
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=6e-19 Score=111.68 Aligned_cols=124 Identities=22% Similarity=0.154 Sum_probs=50.0
Q ss_pred CCcEEEecCCCCCCcchh-hhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 3 FLQELLLDGTDIKGLPLS-IVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
+|++|++++|.++.++.. +..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..++.+++|++++++
T Consensus 62 ~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC
Confidence 444444444444443332 2334444444444444333333333444444444444444433333333344444444444
Q ss_pred CCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcc
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEEL 126 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l 126 (128)
+|.+....+..+..+++|+++++++|.+.+..+..+..+++|+++
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence 443332222223334444444444444333222233333444333
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=4.4e-19 Score=112.96 Aligned_cols=105 Identities=22% Similarity=0.146 Sum_probs=40.0
Q ss_pred hccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCCcE
Q 040556 22 VLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSLKI 101 (128)
Q Consensus 22 ~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 101 (128)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..++.+++|+.+++++|.+....+..+..+++|++
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence 33333444444443333333333333444444444443333322223333444444444444333222222333444444
Q ss_pred EeeecCCCCCCCCcCcCCCCCCCcc
Q 040556 102 LNLSSCSKLENVPENLGKVESLEEL 126 (128)
Q Consensus 102 l~l~~n~~~~~~~~~~~~~~~L~~l 126 (128)
+++++|.+.+..|..++.+++|+++
T Consensus 182 L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEE
T ss_pred EECCCCcccccCHhHccCcccccEe
Confidence 4444444333333334444444433
No 19
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=5.9e-19 Score=107.09 Aligned_cols=122 Identities=17% Similarity=0.189 Sum_probs=74.8
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
++|++|++++|.+..++ .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..++.+++|++++++
T Consensus 66 ~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 66 HNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144 (197)
T ss_dssp TTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred CCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence 45666666666544433 45556666666666666555555556666667777777666666556666666677777776
Q ss_pred CCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
+|...+.++ .+..+++|+++++++|.+.+ ++ .+..+++|++++
T Consensus 145 ~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 145 YNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLY 187 (197)
T ss_dssp SCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEE
T ss_pred CCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEE
Confidence 665344444 46666667777777666544 22 456666666654
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.81 E-value=2.9e-19 Score=126.84 Aligned_cols=127 Identities=22% Similarity=0.263 Sum_probs=114.2
Q ss_pred CCCcEEEecCCCCC-CcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIK-GLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++.+|.+.+..|..++.+++|+.+++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 46788888888887 67888889999999999999988888888999999999999999998888999999999999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+.+|..+.++++|+++++++|.+.+.+|.+++.+++|+++++
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 999988888999999999999999999999899999999999998875
No 21
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.80 E-value=3e-19 Score=108.06 Aligned_cols=122 Identities=20% Similarity=0.180 Sum_probs=74.4
Q ss_pred cEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchh-hhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCC
Q 040556 5 QELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSN-FISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDW 83 (128)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 83 (128)
++++++++.++++|..+. .++++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|+++++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 456666666666665332 2666666666665544443 3556666666666666666655666666666666666666
Q ss_pred cccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 84 QYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
.+.+..+..+.++++|++|++++|.+.+..|..++.+++|+++++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 655555555566666666666666666655666666666666543
No 22
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.2e-18 Score=110.25 Aligned_cols=128 Identities=21% Similarity=0.209 Sum_probs=110.1
Q ss_pred CCCCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 1 MKFLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
+++|++|++++|.+..++. .+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.++
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE
Confidence 4689999999999998765 567899999999999998888877888999999999999988876666688899999999
Q ss_pred ecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 80 LKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
+++|.+....+..+..+++|+++++++|.+.+..+..+..+++|+.+++
T Consensus 164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 9999877766667888999999999999987765556888899988764
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=7e-19 Score=112.04 Aligned_cols=125 Identities=21% Similarity=0.184 Sum_probs=60.1
Q ss_pred CCcEEEecCCCCCCcc-hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCC-CcccchhhhhhcCCCcEEee
Q 040556 3 FLQELLLDGTDIKGLP-LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGT-AIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~l~l 80 (128)
++++|++++|.++.++ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|+++++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 4555555555555443 234455555555555555444444445555555555555554 33333444444555555555
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
++|.+.+..+..+..+++|+++++++|.+.+..+..++.+++|++++
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 55544443344444445555555555444433333344444444443
No 24
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=1.1e-18 Score=111.65 Aligned_cols=126 Identities=21% Similarity=0.130 Sum_probs=90.8
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
++|++|++++|.+..+|..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|+.++++
T Consensus 77 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 56777777777777777667777788888888887766666667778888888888877776555566777788888888
Q ss_pred CCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
+|.+....+..+..+++|+++++++|.+. .+|..+....+|+.+++
T Consensus 157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEEC
T ss_pred CCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEe
Confidence 88766544445567778888888887765 45666666666666543
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=4.2e-19 Score=122.88 Aligned_cols=127 Identities=23% Similarity=0.156 Sum_probs=104.5
Q ss_pred CCCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++++|++++|.++.++. .+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|..++.+++|+++++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 467888999988886654 7788889999999998877777777888889999999988887777888888889999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCC-CCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLE-NVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|+++++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence 9888766555668888889999998888765 56788888888888764
No 26
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=5.5e-19 Score=107.21 Aligned_cols=123 Identities=21% Similarity=0.266 Sum_probs=107.0
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
++|+++++++|.+..++ .+..+++|++|++++|.+.. . ..+..+++|++|++++|.+.+..+..++.+++|++++++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATN-Y-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC-C-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCc-c-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 57899999999999888 78899999999999996433 3 357889999999999999988778888999999999999
Q ss_pred CCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
+|.+....+..+..+++|++|++++|...+.++ .++.+++|+++++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNI 166 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEEC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEEC
Confidence 999888788889999999999999998455555 5888999998875
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=1e-18 Score=117.32 Aligned_cols=127 Identities=22% Similarity=0.101 Sum_probs=110.7
Q ss_pred CCCcEEEecCCCCCCc-chhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGL-PLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
++|+++++++|.+... +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..++.+++|+++++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 4688999999998854 667888999999999999988888888899999999999999988777888899999999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+..|..+..+++|+++++++|.+.+..+..++.+++|+++++
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEc
Confidence 999987777888899999999999999987765556788999988875
No 28
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=7.2e-19 Score=111.50 Aligned_cols=126 Identities=25% Similarity=0.212 Sum_probs=94.0
Q ss_pred CCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 3 FLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
++++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++++++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 57788888888876654 67778888888888888766666677778888888888887777666677778888888888
Q ss_pred CCcccCcchHHhhcCCCCcEEeeecCCCCC-CCCcCcCCCCCCCcccC
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSSCSKLE-NVPENLGKVESLEELDI 128 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~L~~l~l 128 (128)
+|.+.+..+..+.++++|++|++++|.+.+ .+|..++.+++|+++++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 877665544456777788888888877665 35667777777777654
No 29
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=1.6e-19 Score=125.97 Aligned_cols=126 Identities=15% Similarity=0.277 Sum_probs=112.4
Q ss_pred CCCCcEEEecCCCCCC------------------cchhhh--ccCcccEEeccCCCCcccchhhhcccccCCEEecCCCC
Q 040556 1 MKFLQELLLDGTDIKG------------------LPLSIV--LLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGT 60 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~------------------~~~~~~--~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 60 (128)
+++|++|++++|.+.. +|..+. .+++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 4689999999999997 898888 99999999999999999999999999999999999998
Q ss_pred -Ccc-cchhhhhhc------CCCcEEeecCCcccCcchH--HhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 61 -AIR-ELSLSVELL------TGLVVLNLKDWQYLSSLPS--TINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 61 -~~~-~~~~~~~~l------~~L~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
+.+ .+|..++.+ ++|+++++++|.+. .+|. .++++++|++|++++|.+.+.+| .++.+++|+++++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 777 788888876 89999999999877 7887 89999999999999999887888 7888888887764
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1.6e-18 Score=111.28 Aligned_cols=127 Identities=22% Similarity=0.209 Sum_probs=77.9
Q ss_pred CCCcEEEecCCCCCC-cchhhhccCcccEEeccCCCCcc-cchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 2 KFLQELLLDGTDIKG-LPLSIVLLSGIVQLDLKGCKNIS-CLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
++|++|++++|.+.. .+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.+..+..+..+++|+.++
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 445555555555552 23345556666666666666544 3455556666666666666666665566666666777777
Q ss_pred ecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCC-CCCcccC
Q 040556 80 LKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVE-SLEELDI 128 (128)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~-~L~~l~l 128 (128)
+++|.+.+..+..+..+++|+++++++|.+.+..+..+..++ +|+++++
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 777665554444566667777777777776666666666663 6666653
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=8.1e-19 Score=112.70 Aligned_cols=127 Identities=21% Similarity=0.264 Sum_probs=81.9
Q ss_pred CCCcEEEecCCCCCCcc--hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcc-cchhhhhhcCCCcEE
Q 040556 2 KFLQELLLDGTDIKGLP--LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIR-ELSLSVELLTGLVVL 78 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~l 78 (128)
++|++|++++|.+..++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ ..|..+..+++|+++
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 45566666666655443 245566666667776666655555556666777777777766654 355566667777777
Q ss_pred eecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 79 NLKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++++|.+.+..|..+..+++|+++++++|.+.+..+..+..+++|+++++
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 77777666555666667777777777777766554445666677776654
No 32
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3.9e-18 Score=105.18 Aligned_cols=122 Identities=18% Similarity=0.138 Sum_probs=106.8
Q ss_pred cEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCc
Q 040556 5 QELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQ 84 (128)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 84 (128)
+.++..++.++.+|..+. ++++.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 467888888988887554 689999999999887777788999999999999999988888899999999999999999
Q ss_pred ccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 85 YLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 85 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
+....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEEC
Confidence 77655555788999999999999998887888999999998875
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=3e-18 Score=115.08 Aligned_cols=127 Identities=20% Similarity=0.162 Sum_probs=104.3
Q ss_pred CCCcEEEecCCCCCCc-chhhhccCcccEEeccCCCCcccc-hhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 2 KFLQELLLDGTDIKGL-PLSIVLLSGIVQLDLKGCKNISCL-SNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
+++++|++++|.++.+ +..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..++.+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 4688999999999865 667888999999999999876554 45688899999999999988887788888899999999
Q ss_pred ecCCcccCcchHH--hhcCCCCcEEeeecCCCCCCCCcC-cCCCCCCCcccC
Q 040556 80 LKDWQYLSSLPST--INGLKSLKILNLSSCSKLENVPEN-LGKVESLEELDI 128 (128)
Q Consensus 80 l~~~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~L~~l~l 128 (128)
+++|.+.+..+.. +..+++|++|++++|.+.+..|.. ++.+++|+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 9999877755554 778889999999999887766655 778888888764
No 34
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=4.2e-18 Score=108.95 Aligned_cols=124 Identities=23% Similarity=0.159 Sum_probs=77.3
Q ss_pred CCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecC
Q 040556 3 FLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKD 82 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 82 (128)
+|++|++++|.++.++.. ..+++|++|++++|.+. ..|..+..+++|+.|++++|.+.+..+..+..+++|+++++++
T Consensus 56 ~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 56 RLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133 (290)
T ss_dssp TCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred CCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC
Confidence 344444444444433322 34455555555555533 3444556677777777777777665556677777788888887
Q ss_pred CcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 83 WQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
|.+....+..+..+++|++|++++|.+.+..+..+..+++|+++++
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence 7766555555667777888888877766544445666777777654
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=1.9e-18 Score=123.84 Aligned_cols=125 Identities=16% Similarity=0.261 Sum_probs=105.7
Q ss_pred CCCCcEEEecCCCCCC------------------cchhhh--ccCcccEEeccCCCCcccchhhhcccccCCEEecCCCC
Q 040556 1 MKFLQELLLDGTDIKG------------------LPLSIV--LLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGT 60 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~------------------~~~~~~--~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 60 (128)
+++|++|++++|.+.. +|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 4688999999999887 888766 89999999999999888889889999999999999987
Q ss_pred -Ccc-cchhhhhhcC-------CCcEEeecCCcccCcchH--HhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 61 -AIR-ELSLSVELLT-------GLVVLNLKDWQYLSSLPS--TINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 61 -~~~-~~~~~~~~l~-------~L~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
+.+ .+|..++.++ +|++|++++|.+. .+|. .++++++|++|++++|.+. .+| .++.+++|+.|++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 776 7787777766 8999999998877 7777 7888899999999988876 667 7788888887764
No 36
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.77 E-value=8.7e-18 Score=101.74 Aligned_cols=119 Identities=24% Similarity=0.260 Sum_probs=57.3
Q ss_pred EEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcc
Q 040556 6 ELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQY 85 (128)
Q Consensus 6 ~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 85 (128)
+++++++.++.+|..+ .+++++|++++|.+. ..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 3444555555444332 234555555555533 3334445555555555555555444444455555555555555554
Q ss_pred cCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 86 LSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 86 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
....+..+..+++|++|++++|.+....+..+..+++|+.++
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 444444455555555555555554433333344455554443
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=3.8e-18 Score=112.83 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=87.6
Q ss_pred CCCcEEEecCCCCCCcchh-hhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLPLS-IVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
++++++++.++.++.+|.. +..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..++.+++|+++++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 4567777777777766654 466777777777777766666666777777777777777776666666777777777777
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+....+..+.++++|++|++++|.+.+..+..++.+++|+++++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence 777655333333466777777777777766655556777777776653
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.77 E-value=6.8e-18 Score=118.23 Aligned_cols=127 Identities=20% Similarity=0.151 Sum_probs=107.9
Q ss_pred CCCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++++|++++|.++.++. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+..++.+++|+++++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 468899999999987764 6888999999999999988888888889999999999998877655557888999999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+..+..++++++|+++++++|.+.+..+..++.+++|+++++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 152 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEEC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEc
Confidence 999877666677888999999999999988877777888888888764
No 39
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=7.9e-18 Score=101.92 Aligned_cols=109 Identities=20% Similarity=0.176 Sum_probs=98.9
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
+++++|++++|.++.+|..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|++++++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 46899999999999999899999999999999999888888889999999999999999988877889999999999999
Q ss_pred CCcccCcchHHhhcCCCCcEEeeecCCCC
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSSCSKL 110 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 110 (128)
+|.+....+..+..+++|+++++++|++.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99977655556888999999999999864
No 40
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=4.2e-18 Score=103.02 Aligned_cols=110 Identities=25% Similarity=0.242 Sum_probs=100.1
Q ss_pred CCcEEEecCCCCCCcchh--hhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 3 FLQELLLDGTDIKGLPLS--IVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~--~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
++++|++++|.++.++.. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+++++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 689999999999987653 889999999999999998888888999999999999999998887777889999999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLEN 112 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 112 (128)
++|.+.+..|..+..+++|+++++++|.+...
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 99998888888899999999999999997654
No 41
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.76 E-value=4.8e-18 Score=101.40 Aligned_cols=123 Identities=20% Similarity=0.112 Sum_probs=100.8
Q ss_pred CCCCcEEEecCCCCCCcchhhhcc-CcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLL-SGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l-~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
+++|++|++++|.++.++. +..+ ++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+..++.+++|++++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 3578999999999998764 4444 4999999999997765 5688899999999999998865445568999999999
Q ss_pred ecCCcccCcchH--HhhcCCCCcEEeeecCCCCCCCCcC----cCCCCCCCcccC
Q 040556 80 LKDWQYLSSLPS--TINGLKSLKILNLSSCSKLENVPEN----LGKVESLEELDI 128 (128)
Q Consensus 80 l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~----~~~~~~L~~l~l 128 (128)
+++|.+ +.+|. .+..+++|+++++++|.+.. +|.. ++.+++|+.+|+
T Consensus 95 L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 95 LTNNSL-VELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp CCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETT
T ss_pred CCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCC
Confidence 999986 45565 68899999999999999764 4553 788899988874
No 42
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=5.2e-18 Score=111.37 Aligned_cols=126 Identities=20% Similarity=0.095 Sum_probs=93.7
Q ss_pred CCcEEEecCCCCCCcchh-hh-ccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 3 FLQELLLDGTDIKGLPLS-IV-LLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~-~~-~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
.++.|++++|.++.++.. +. .+++|+.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 467888888888866543 44 7888888888888877776677888888888888888877666667778888888888
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCc---CCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENL---GKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~---~~~~~L~~l~l 128 (128)
++|.+....+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 8888776667777888888888888888665333333 45777777654
No 43
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=6.5e-18 Score=104.17 Aligned_cols=111 Identities=21% Similarity=0.168 Sum_probs=101.1
Q ss_pred CCCCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 1 MKFLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++++
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 4689999999999997755 788999999999999998888888899999999999999999988888899999999999
Q ss_pred ecCCcccCcchHHhhcCCCCcEEeeecCCCCC
Q 040556 80 LKDWQYLSSLPSTINGLKSLKILNLSSCSKLE 111 (128)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 111 (128)
+++|.+.+..|..+..+++|+++++++|.+..
T Consensus 136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 99999888778889999999999999998753
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=115.66 Aligned_cols=124 Identities=19% Similarity=0.112 Sum_probs=57.5
Q ss_pred CCcEEEecCCCCCCc-chhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 3 FLQELLLDGTDIKGL-PLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
++++|++++|.++.+ +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|++++++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 344555555555533 2344455555555555555444444445555555555555544443333334444455555555
Q ss_pred CCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcc
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEEL 126 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l 126 (128)
+|.+....+..+..+++|++|++++|.+.+..+..++.+++|+++
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 444444334444444444444444444433333334444444433
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.76 E-value=2.1e-18 Score=119.40 Aligned_cols=125 Identities=22% Similarity=0.220 Sum_probs=54.4
Q ss_pred CCcEEEecCCCCCCcc--hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCccc-chhhhhhcCCCcEEe
Q 040556 3 FLQELLLDGTDIKGLP--LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRE-LSLSVELLTGLVVLN 79 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~ 79 (128)
+|++|++++|.+...+ ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+. .|..++.+++|+.++
T Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479 (606)
T ss_dssp TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence 3444444444443221 2333444444444444444444444444444444444444444331 333344444444444
Q ss_pred ecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 80 LKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
+++|.+.+..|..+.++++|+++++++|.+.+..|..++.+++|++++
T Consensus 480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence 444444443344444444444444444444444344444444444443
No 46
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.76 E-value=1.3e-18 Score=121.49 Aligned_cols=112 Identities=14% Similarity=0.195 Sum_probs=101.6
Q ss_pred CcchhhhccCcccEEeccCCCCccc-----------------chhhhc--ccccCCEEecCCCCCcccchhhhhhcCCCc
Q 040556 16 GLPLSIVLLSGIVQLDLKGCKNISC-----------------LSNFIS--ALKFLSTLNLSDGTAIRELSLSVELLTGLV 76 (128)
Q Consensus 16 ~~~~~~~~l~~L~~l~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 76 (128)
.+|..+..+++|++|++++|.+.+. .|..+. .+++|++|++++|.+.+..|..++.+++|+
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 4677888999999999999998875 888888 999999999999999999999999999999
Q ss_pred EEeecCCc-ccC-cchHHhhcC------CCCcEEeeecCCCCCCCCc--CcCCCCCCCcccC
Q 040556 77 VLNLKDWQ-YLS-SLPSTINGL------KSLKILNLSSCSKLENVPE--NLGKVESLEELDI 128 (128)
Q Consensus 77 ~l~l~~~~-~~~-~~~~~~~~~------~~L~~l~l~~n~~~~~~~~--~~~~~~~L~~l~l 128 (128)
++++++|. +.+ .+|..++.+ ++|++|++++|.+. .+|. .++.+++|+++++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L 337 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLEC 337 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEEC
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeC
Confidence 99999998 777 789888876 89999999999987 7888 8999999998875
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.76 E-value=5.4e-18 Score=114.58 Aligned_cols=128 Identities=22% Similarity=0.260 Sum_probs=111.1
Q ss_pred CCCCcEEEecCCCCCCc-chhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 1 MKFLQELLLDGTDIKGL-PLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
+++|++|++++|.+..+ |..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++++
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 46899999999999866 67889999999999999997766666788899999999999999888888899999999999
Q ss_pred ecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 80 LKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
+++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.+++
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 9999887777778889999999999999987765566888888888763
No 48
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.76 E-value=2.3e-17 Score=98.49 Aligned_cols=121 Identities=21% Similarity=0.206 Sum_probs=62.5
Q ss_pred cEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCc
Q 040556 5 QELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQ 84 (128)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 84 (128)
+.++++++.++.+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|+.+++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 34555555555555322 2455566666555444444444555556666666555554433444555556666666555
Q ss_pred ccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 85 YLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 85 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
+.+..+..+..+++|+++++++|.+.+..+..+..+++|++++
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 4443333445555566666665555433333345555555544
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1e-17 Score=108.06 Aligned_cols=128 Identities=20% Similarity=0.170 Sum_probs=91.2
Q ss_pred CCCCcEEEecCCCCCCcchhhhcc-----CcccEEeccCCCCcccchhhhcccccCCEEecCCCCCccc--chhhh--hh
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLL-----SGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRE--LSLSV--EL 71 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l-----~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~--~~ 71 (128)
+++|++|++++|.+...|..+..+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+ +.
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 356777888888777666666655 7888888888887777767788888888888888876654 23343 67
Q ss_pred cCCCcEEeecCCcccC--cch-HHhhcCCCCcEEeeecCCCCCCCC-cCcCCCCCCCcccC
Q 040556 72 LTGLVVLNLKDWQYLS--SLP-STINGLKSLKILNLSSCSKLENVP-ENLGKVESLEELDI 128 (128)
Q Consensus 72 l~~L~~l~l~~~~~~~--~~~-~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l 128 (128)
+++|+++++++|.+.. .++ ..+..+++|++|++++|.+.+..| ..+..+++|+++++
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence 7888888888887663 223 233567888888888888777653 34556677777764
No 50
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.75 E-value=8.7e-18 Score=116.35 Aligned_cols=127 Identities=18% Similarity=0.042 Sum_probs=102.0
Q ss_pred CCCcEEEecCCCCCCc-chhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGL-PLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+.+++|++++|.++.+ +..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|..++.+++|+++++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 3578889999988866 557888899999999999888877888888999999999998888777888888889999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+..+..++++++|++|++++|.+.+..++.+..+++|+++++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 160 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEEC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEc
Confidence 988877655666788888999999888877633333444788877764
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=8.3e-18 Score=116.61 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=81.8
Q ss_pred CCCcEEEecCCCCCCcchh-hhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLPLS-IVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
.+++.+++.++.+..+|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..++.+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 3456666766666666543 455677777777777766655556666777777777777666655556666777777777
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+....+..++++++|++|++++|.+.+..|..++.+++|++|++
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEEC
Confidence 776655433333466677777777777666655556666666666653
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=8.5e-18 Score=115.51 Aligned_cols=127 Identities=24% Similarity=0.208 Sum_probs=99.9
Q ss_pred CCCcEEEecCCCCCCcc-hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLP-LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++++|++++|.++.++ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..++.+++|+++++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 35788888888888664 46788888999999888877777777888888999999888877776777888888888888
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCC-CCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLE-NVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~L~~l~l 128 (128)
++|.+....+..++++++|++|++++|.+.+ .+|..++++++|+++++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l 156 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeC
Confidence 8887655433357788888888888888766 46777888888887764
No 53
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.5e-17 Score=103.05 Aligned_cols=122 Identities=18% Similarity=0.124 Sum_probs=104.9
Q ss_pred CcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCC
Q 040556 4 LQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDW 83 (128)
Q Consensus 4 L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 83 (128)
-+.++.+++.+..+|..+. +++++|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3567888888888886543 88999999999988888888999999999999999987665667789999999999999
Q ss_pred cccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 84 QYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
.+....+..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 142 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEEC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEEC
Confidence 987766666789999999999999976 67888899999998875
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=4.1e-18 Score=108.05 Aligned_cols=124 Identities=23% Similarity=0.159 Sum_probs=96.2
Q ss_pred CCCCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 1 MKFLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
+++|++|++++|.+..++. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..++.+++|++++
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 4678899999998886654 677888999999999987777777788888999999988887766555677888889999
Q ss_pred ecCCcccC-cchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCC
Q 040556 80 LKDWQYLS-SLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLE 124 (128)
Q Consensus 80 l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 124 (128)
+++|.+.. .+|..+..+++|+++++++|.+.+..+..+..+++++
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 98888765 3577888888888888888887665444454444444
No 55
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=5.6e-18 Score=116.06 Aligned_cols=126 Identities=21% Similarity=0.209 Sum_probs=87.1
Q ss_pred CCCcEEEecCCCCCCc-chhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGL-PLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++++|++++|.++.+ +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..++.+++|+++++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 3577778888777754 456777777888888887777666667777777888888777777666666777777777777
Q ss_pred cCCcccC-cchHHhhcCCCCcEEeeecCCCCCCCC-cCcCCCCCCCccc
Q 040556 81 KDWQYLS-SLPSTINGLKSLKILNLSSCSKLENVP-ENLGKVESLEELD 127 (128)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~L~~l~ 127 (128)
++|.+.+ ..|..++++++|++|++++|...+.++ ..++.+++|++++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence 7776654 344556667777777777776444444 3466666666554
No 56
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=1.5e-17 Score=114.76 Aligned_cols=122 Identities=22% Similarity=0.154 Sum_probs=105.9
Q ss_pred CCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecC
Q 040556 3 FLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKD 82 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 82 (128)
.|+.|++++|.++.+|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+ +| .++.+++|+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 57899999999999986 899999999999999966 778889999999999999999886 56 889999999999999
Q ss_pred CcccCcc-hHHhhcCCCCcEEeeecCCCCCCCCcC---cCCCCCCCcccC
Q 040556 83 WQYLSSL-PSTINGLKSLKILNLSSCSKLENVPEN---LGKVESLEELDI 128 (128)
Q Consensus 83 ~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~~~~L~~l~l 128 (128)
|.+.+.. |..++.+++|++|++++|.+.+..+.. +..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9988766 889999999999999999987654321 234788888864
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=6.7e-18 Score=116.03 Aligned_cols=128 Identities=20% Similarity=0.277 Sum_probs=97.0
Q ss_pred CCCCcEEEecCCCCCCcc--hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCc-ccchhhhhhcCCCcE
Q 040556 1 MKFLQELLLDGTDIKGLP--LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAI-RELSLSVELLTGLVV 77 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~ 77 (128)
+++|++|++++|.+...+ ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+. +..|..+..+++|+.
T Consensus 395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474 (570)
T ss_dssp CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence 356667777777666442 25667778888888888777777777777888888888888776 456777788888888
Q ss_pred EeecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 78 LNLKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 78 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
+++++|.+.+..|..+..+++|+++++++|.+.+..+..++.+++|+.+++
T Consensus 475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred EECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 888888877766777888888888888888877766666788888887764
No 58
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.74 E-value=1.6e-17 Score=114.99 Aligned_cols=126 Identities=30% Similarity=0.242 Sum_probs=74.3
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchh-hhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSL-SVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~l~l 80 (128)
++|++|++++|.++.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+. .++.+++|+++++
T Consensus 278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 466777777777776666666677777777777766655555566666666666666655543332 3555556666666
Q ss_pred cCCcccCcc--hHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 81 KDWQYLSSL--PSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 81 ~~~~~~~~~--~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
++|.+.+.. +..+..+++|+++++++|.+.+..+..++.+++|++++
T Consensus 358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 655544432 34455555555555555555444444455555555443
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=109.41 Aligned_cols=124 Identities=22% Similarity=0.171 Sum_probs=70.8
Q ss_pred CCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 3 FLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
++++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++++++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 46666666666665544 55666666666666666555555556666666666666666554444445566666666666
Q ss_pred CCcccCcchH--HhhcCCCCcEEeeecCC-CCCCCCcCcCCCCCCCccc
Q 040556 82 DWQYLSSLPS--TINGLKSLKILNLSSCS-KLENVPENLGKVESLEELD 127 (128)
Q Consensus 82 ~~~~~~~~~~--~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~L~~l~ 127 (128)
+|.+.. +|. .+..+++|+++++++|. +....+..++.+++|++++
T Consensus 133 ~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 133 GNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp TCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 665443 332 44555666666666553 2222233455555555443
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.74 E-value=5.6e-18 Score=116.06 Aligned_cols=127 Identities=23% Similarity=0.254 Sum_probs=109.6
Q ss_pred CCCCcEEEecCCCCCCcc-hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcc-cchhhhhhcCCCcEE
Q 040556 1 MKFLQELLLDGTDIKGLP-LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIR-ELSLSVELLTGLVVL 78 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~l 78 (128)
+++|++|++++|.+..++ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..++.+++|+++
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 478999999999999664 678999999999999999888888789999999999999998876 356778899999999
Q ss_pred eecCCcccCcch-HHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 79 NLKDWQYLSSLP-STINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 79 ~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
++++|...+.++ ..+.++++|+++++++|.+.+..|..++.+++|++++
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 999998666665 5788999999999999999888888888877776654
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=8e-18 Score=110.04 Aligned_cols=128 Identities=21% Similarity=0.208 Sum_probs=105.5
Q ss_pred CCCCcEEEecCCCCCCc-chhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccch-hhhhhcCCCcEE
Q 040556 1 MKFLQELLLDGTDIKGL-PLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELS-LSVELLTGLVVL 78 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l 78 (128)
+++|++|++++|.++.+ +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+ ..+..+++|+++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence 46899999999999866 4568889999999999999777666668889999999999998775433 467889999999
Q ss_pred eecCCcccCc-chHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 79 NLKDWQYLSS-LPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 79 ~l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++++|..... .+..+..+++|+++++++|.+.+..|..++.+++|+++++
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 9999853444 4567888999999999999988877888888888887753
No 62
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=112.91 Aligned_cols=106 Identities=19% Similarity=0.099 Sum_probs=66.4
Q ss_pred CCcEEEecCCCCCCcc-hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 3 FLQELLLDGTDIKGLP-LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
++++|++++|.+..++ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.. +|.. .+++|++++++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECC
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEecc
Confidence 4666666666666553 456666666666666666666556666666666666666666553 3333 56666666666
Q ss_pred CCcccC-cchHHhhcCCCCcEEeeecCCCCC
Q 040556 82 DWQYLS-SLPSTINGLKSLKILNLSSCSKLE 111 (128)
Q Consensus 82 ~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~ 111 (128)
+|.+.+ .+|..++++++|++|++++|.+.+
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred CCccccccchhhhccCCcceEEEecCcccch
Confidence 666555 355666666666666666666544
No 63
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.73 E-value=1.3e-16 Score=103.87 Aligned_cols=121 Identities=23% Similarity=0.230 Sum_probs=98.9
Q ss_pred CCCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++|++|++++|.+..++. +..+++|++|++++|.+... +.+..+++|+.|++++|.+.+. +.+..+++|+.+++
T Consensus 220 ~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFL 294 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred CCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEEC
Confidence 3578888888888887665 77888899999988886654 3477888999999999887664 45778899999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+..+..+..+++|+++++++|.+.+..| ++.+++|+++++
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred cCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 9999888888888999999999999999776544 778889988875
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=119.09 Aligned_cols=127 Identities=21% Similarity=0.170 Sum_probs=94.9
Q ss_pred CCCcEEEecCCCCCCc-chhhhccCcccEEeccCCCCcccc-hhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 2 KFLQELLLDGTDIKGL-PLSIVLLSGIVQLDLKGCKNISCL-SNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
+++++|++++|.++.+ +..+..+++|++|++++|...+.. |..+..+++|++|++++|.+.+..|..++.+++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 5678888888888754 567778888888888888555544 56677888888888888887777777788888888888
Q ss_pred ecCCcccCcchHH--hhcCCCCcEEeeecCCCCCCCC-cCcCCCCCCCcccC
Q 040556 80 LKDWQYLSSLPST--INGLKSLKILNLSSCSKLENVP-ENLGKVESLEELDI 128 (128)
Q Consensus 80 l~~~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l 128 (128)
+++|.+.+..+.. +.++++|++|++++|.+.+..+ ..++++++|++|++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 8888776655544 6777888888888887766543 45777788777653
No 65
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.72 E-value=5.8e-17 Score=107.18 Aligned_cols=123 Identities=16% Similarity=0.065 Sum_probs=102.0
Q ss_pred CCCCcEEEecCCCCCCcc-hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 1 MKFLQELLLDGTDIKGLP-LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
+++|++|++++|.+..++ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+..++.+++|++++
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 478999999999999765 4788999999999999998888888889999999999999988765445568899999999
Q ss_pred ecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcc
Q 040556 80 LKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEEL 126 (128)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l 126 (128)
+++|.+.+..+..+..+++|++|++++|.+.+.. ++.+++|+.+
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L 191 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHA 191 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEE
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccc---ccccccccee
Confidence 9999987777777889999999999999876542 3444555443
No 66
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=1.1e-16 Score=97.69 Aligned_cols=111 Identities=23% Similarity=0.173 Sum_probs=94.8
Q ss_pred CCCCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 1 MKFLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++++
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence 4689999999999998765 467899999999999998877666788999999999999998876666688899999999
Q ss_pred ecCCcccCcchHHhhcCCCCcEEeeecCCCCC
Q 040556 80 LKDWQYLSSLPSTINGLKSLKILNLSSCSKLE 111 (128)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 111 (128)
+++|.+.+..+..+..+++|+++++++|.+.+
T Consensus 131 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 99998776555567889999999999987643
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=5e-17 Score=109.40 Aligned_cols=106 Identities=23% Similarity=0.083 Sum_probs=62.5
Q ss_pred CCcEEEecCCCCCCc-chhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 3 FLQELLLDGTDIKGL-PLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
++++|++++|.++.+ +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 466666766666644 4456666666666666666665555566666666666666666555444445566666666666
Q ss_pred CCcccCcchHHhhcCCCCcEEeeecCC
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSSCS 108 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~ 108 (128)
+|.+....+..+.++++|++|++++|+
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~ 182 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELK 182 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCC
Confidence 665443333344445555555555433
No 68
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=2.8e-16 Score=100.49 Aligned_cols=102 Identities=22% Similarity=0.200 Sum_probs=49.2
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
++|++|++++|.++.++. +..+++|++|++++|.+.+ .+ .+..+++|+.|++++|.+.+. +.+..+++|+.++++
T Consensus 68 ~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~ 142 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLG 142 (291)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECC
T ss_pred CCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEcc
Confidence 455555555555554443 4555555555555555333 22 144455555555555544432 234444555555555
Q ss_pred CCcccCcchHHhhcCCCCcEEeeecCCCC
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSSCSKL 110 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 110 (128)
+|.+... ..+..+++|++|++++|.+.
T Consensus 143 ~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 143 NNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 5443332 23444444555555544443
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=1e-16 Score=107.89 Aligned_cols=125 Identities=22% Similarity=0.181 Sum_probs=77.8
Q ss_pred CCCcEEEecCCCCCCcch-hhhccCc-------------------------ccEEeccCCCCcccchhhhcccccCCEEe
Q 040556 2 KFLQELLLDGTDIKGLPL-SIVLLSG-------------------------IVQLDLKGCKNISCLSNFISALKFLSTLN 55 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~-~~~~l~~-------------------------L~~l~l~~~~~~~~~~~~~~~l~~L~~L~ 55 (128)
++|++|++++|.+..++. .+..+++ |++|++++|.+.+. | .+..+++|+.|+
T Consensus 147 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~ 224 (452)
T 3zyi_A 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELE 224 (452)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEE
T ss_pred CCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEE
Confidence 466777777776665443 3444444 44445544443322 2 244555666666
Q ss_pred cCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 56 LSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 56 l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
+++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.+++
T Consensus 225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEEC
T ss_pred CcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEc
Confidence 6666666666666777777777777777766666666777777777777777766555555667777776654
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=6.5e-17 Score=112.15 Aligned_cols=123 Identities=16% Similarity=0.065 Sum_probs=103.5
Q ss_pred CCCCcEEEecCCCCCCcc-hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 1 MKFLQELLLDGTDIKGLP-LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
+++|++|++++|.+..++ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+..++.+++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 468999999999999765 4788999999999999998888888889999999999999988865555678999999999
Q ss_pred ecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcc
Q 040556 80 LKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEEL 126 (128)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l 126 (128)
+++|.+.+..|..++.+++|++|++++|.+.+.. ++.+++|+.+
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L 197 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHA 197 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEE
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhh
Confidence 9999988877778999999999999999876642 3344555444
No 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=7e-17 Score=108.36 Aligned_cols=104 Identities=22% Similarity=0.112 Sum_probs=51.7
Q ss_pred CCcEEEecCCCCCCcc-hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 3 FLQELLLDGTDIKGLP-LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
+++.|++++|.++.++ ..+..+++|++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 3455555555555432 345555555555555555544444455555555555555555444333344455555555555
Q ss_pred CCcccCcchHHhhcCCCCcEEeeec
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSS 106 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~ 106 (128)
+|.+....+..+..+++|++|++++
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CCcccccCHHHhhhCcccCEeCCCC
Confidence 5544333233344444444444444
No 72
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=2.6e-17 Score=108.06 Aligned_cols=122 Identities=23% Similarity=0.162 Sum_probs=100.4
Q ss_pred CCCCcEEEecCCCCCCcc-hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 1 MKFLQELLLDGTDIKGLP-LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
+++|++|++++|.+..++ ..+..+++|++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 468999999999999776 4688999999999999998877777889999999999999999888788899999999999
Q ss_pred ecCCcccCcchHHh---hcCCCCcEEeeecCCCCCCCCcCcCCCCC
Q 040556 80 LKDWQYLSSLPSTI---NGLKSLKILNLSSCSKLENVPENLGKVES 122 (128)
Q Consensus 80 l~~~~~~~~~~~~~---~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 122 (128)
+++|.+....+..+ ..+++|++|++++|.+.+..+..+..++.
T Consensus 143 L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 188 (361)
T 2xot_A 143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188 (361)
T ss_dssp CCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCH
T ss_pred CCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccH
Confidence 99998766433334 56899999999999987644344555543
No 73
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=2.9e-17 Score=117.85 Aligned_cols=124 Identities=17% Similarity=0.135 Sum_probs=105.9
Q ss_pred CCCCcEEEecCCCCC-CcchhhhccCcccEEeccCCC-Ccc-cchhhhcccc-------cCCEEecCCCCCcccchh--h
Q 040556 1 MKFLQELLLDGTDIK-GLPLSIVLLSGIVQLDLKGCK-NIS-CLSNFISALK-------FLSTLNLSDGTAIRELSL--S 68 (128)
Q Consensus 1 l~~L~~l~l~~~~~~-~~~~~~~~l~~L~~l~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~ 68 (128)
+++|++|++++|.+. .+|..+..+++|+.|++++|. +.+ ..|..+..++ +|+.|++++|.+. .+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 468999999999876 789889999999999999998 777 7787776665 9999999999888 6777 8
Q ss_pred hhhcCCCcEEeecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCC-CCcccC
Q 040556 69 VELLTGLVVLNLKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVES-LEELDI 128 (128)
Q Consensus 69 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~-L~~l~l 128 (128)
++.+++|+.|++++|.+. .+| .++.+++|++|++++|.+. .+|..++.+++ |+.|++
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEEC
T ss_pred hhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEEC
Confidence 889999999999999876 777 7888899999999999877 77878888888 887764
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=2e-17 Score=102.95 Aligned_cols=123 Identities=14% Similarity=0.060 Sum_probs=89.1
Q ss_pred CCcEEEecCCCCCCcch-hhhccCcccEEeccCCC-CcccchhhhcccccCCEEecCC-CCCcccchhhhhhcCCCcEEe
Q 040556 3 FLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCK-NISCLSNFISALKFLSTLNLSD-GTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~ 79 (128)
++++|++++|.++.++. .+..+++|++|++++|. +....+..|..+++|+.|++++ |.+....+..+..+++|++++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 57888888888887765 67778888888888886 5555555677888888888887 777665556677788888888
Q ss_pred ecCCcccCcchHHhhcCCCCc---EEeeecC-CCCCCCCcCcCCCCCCC-ccc
Q 040556 80 LKDWQYLSSLPSTINGLKSLK---ILNLSSC-SKLENVPENLGKVESLE-ELD 127 (128)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~---~l~l~~n-~~~~~~~~~~~~~~~L~-~l~ 127 (128)
+++|.+.+ +|. +..+++|+ ++++++| .+.+..+..++.+++|+ +++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEE
Confidence 88877554 554 66666666 7788777 55444444566777776 655
No 75
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=1.5e-16 Score=94.88 Aligned_cols=112 Identities=21% Similarity=0.135 Sum_probs=96.0
Q ss_pred CCCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+++++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 578999999999997765 4678999999999999987777677889999999999999988776667888999999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENV 113 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 113 (128)
++|.+.+..+..+..+++|+++++++|.+.+..
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 999877655555678999999999999987643
No 76
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.71 E-value=7.7e-17 Score=110.98 Aligned_cols=106 Identities=21% Similarity=0.137 Sum_probs=56.2
Q ss_pred CCcEEEecCCCCCCcc-hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 3 FLQELLLDGTDIKGLP-LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
++++|++++|.+..++ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.. +|.. .+++|++++++
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEECC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEECC
Confidence 4555555555555443 345555555555555555555545555555555555555555442 3322 45555555555
Q ss_pred CCcccC-cchHHhhcCCCCcEEeeecCCCCC
Q 040556 82 DWQYLS-SLPSTINGLKSLKILNLSSCSKLE 111 (128)
Q Consensus 82 ~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~ 111 (128)
+|.+.+ ..|..++++++|++|++++|.+.+
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCccccCchHhhcccCcccEEecCCCcccc
Confidence 555443 233455555556666665555443
No 77
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=1.2e-16 Score=110.76 Aligned_cols=127 Identities=22% Similarity=0.203 Sum_probs=104.4
Q ss_pred CCCcEEEecCCCCCCc-chhhhccCcccEEeccCCCCcc-cchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 2 KFLQELLLDGTDIKGL-PLSIVLLSGIVQLDLKGCKNIS-CLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
++++.++++.|.+... +..+..++.++.+++++|.... ..|..+..+++|+.|++++|++.+..|..++.+++|+.|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 4567777888877743 5566778899999999887544 4566788899999999999998888888899999999999
Q ss_pred ecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCC-CCCCcccC
Q 040556 80 LKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKV-ESLEELDI 128 (128)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~-~~L~~l~l 128 (128)
+++|++.+..+..+.++++|++|++++|.+.+..|..+.++ ++|+++++
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 99998877777778889999999999999988888888887 57887764
No 78
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=107.36 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=14.8
Q ss_pred CCcEEEecCCCCCCcch-hhhccCcccEEeccCCCC
Q 040556 3 FLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKN 37 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~ 37 (128)
+|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence 34444444444443332 233444444444444443
No 79
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.70 E-value=3e-16 Score=101.71 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=41.5
Q ss_pred cccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCCcEEeee
Q 040556 26 GIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSLKILNLS 105 (128)
Q Consensus 26 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 105 (128)
+|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+. .+|..+..+++|++++++
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence 4444444444444443444445555555555555544444444445555555555555433 344444455555555555
Q ss_pred cCCCCC
Q 040556 106 SCSKLE 111 (128)
Q Consensus 106 ~n~~~~ 111 (128)
+|.+.+
T Consensus 272 ~N~i~~ 277 (330)
T 1xku_A 272 NNNISA 277 (330)
T ss_dssp SSCCCC
T ss_pred CCcCCc
Confidence 555443
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=109.29 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=67.5
Q ss_pred CCCcEEEecCCCCCC-cchhhhccCcccEEeccCCCCcc--cchhhhcccccCCEEecCCCCCcccchhh-hhhc-----
Q 040556 2 KFLQELLLDGTDIKG-LPLSIVLLSGIVQLDLKGCKNIS--CLSNFISALKFLSTLNLSDGTAIRELSLS-VELL----- 72 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l----- 72 (128)
++|++|++++|.+.+ .|..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.+.+|.. +..+
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 344555555555542 34444445555555555555443 23333444445555555544444322221 2222
Q ss_pred -----------------CCCcEEeecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcC-cCCCCCCCcccC
Q 040556 73 -----------------TGLVVLNLKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPEN-LGKVESLEELDI 128 (128)
Q Consensus 73 -----------------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~L~~l~l 128 (128)
++|+.+++++|.+. .+|..+..+++|+++++++|.+.. +|.. +..+++|+++++
T Consensus 404 L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp EECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred EECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEEC
Confidence 45666666666644 566666677778888888777653 4544 677777777654
No 81
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.70 E-value=5.6e-17 Score=113.66 Aligned_cols=111 Identities=19% Similarity=0.066 Sum_probs=66.6
Q ss_pred CCCcEEEecCCCCCCc-chhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGL-PLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
++|++|++++|.+..+ +..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..++.+++|+++++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 4566666666666644 445566666666666666655444445666666666666666655544455666666666666
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLEN 112 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 112 (128)
++|.+.+..+..++++++|+++++++|.+.+.
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCCcccccCchhhcccccCCEEEccCCccccc
Confidence 66665555455555566666666666655443
No 82
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.70 E-value=1.7e-16 Score=94.29 Aligned_cols=106 Identities=21% Similarity=0.117 Sum_probs=91.5
Q ss_pred CcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCC
Q 040556 4 LQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDW 83 (128)
Q Consensus 4 L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 83 (128)
.++++++++.++.+|..+ .+++++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+++++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 467899999999888765 378999999999988888888999999999999999988766667788999999999999
Q ss_pred cccCcchHHhhcCCCCcEEeeecCCCCC
Q 040556 84 QYLSSLPSTINGLKSLKILNLSSCSKLE 111 (128)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 111 (128)
.+.+..+..+..+++|+++++++|.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 8776656678899999999999998754
No 83
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=2.4e-17 Score=116.58 Aligned_cols=107 Identities=21% Similarity=0.175 Sum_probs=55.0
Q ss_pred CCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecC
Q 040556 3 FLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKD 82 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 82 (128)
.|+.|++++|.+..++..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..++.+++|++|++++
T Consensus 225 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 225 LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCS
T ss_pred CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCC
Confidence 445555555555555544445555555555555543 44444555555555555555544 3444555555555555555
Q ss_pred CcccCcchHHhhcCCCCcEEeeecCCCCCC
Q 040556 83 WQYLSSLPSTINGLKSLKILNLSSCSKLEN 112 (128)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 112 (128)
|.+. .+|..++.+++|++|++++|.+.+.
T Consensus 303 N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 303 NMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp SCCC-CCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CCCC-ccChhhhcCCCccEEeCCCCccCCC
Confidence 5432 3444455555555555555555443
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=9.8e-18 Score=108.10 Aligned_cols=127 Identities=20% Similarity=0.261 Sum_probs=99.8
Q ss_pred CCCCcEEEecCCCCC-Ccchhh--hccCcccEEeccCCCCcccchhhhccc-----ccCCEEecCCCCCcccchhhhhhc
Q 040556 1 MKFLQELLLDGTDIK-GLPLSI--VLLSGIVQLDLKGCKNISCLSNFISAL-----KFLSTLNLSDGTAIRELSLSVELL 72 (128)
Q Consensus 1 l~~L~~l~l~~~~~~-~~~~~~--~~l~~L~~l~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l 72 (128)
+++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 467899999999988 567665 7889999999999997776 6667666 889999999999888777888899
Q ss_pred CCCcEEeecCCcccCc--chHHh--hcCCCCcEEeeecCCCCC--CCC-cCcCCCCCCCcccC
Q 040556 73 TGLVVLNLKDWQYLSS--LPSTI--NGLKSLKILNLSSCSKLE--NVP-ENLGKVESLEELDI 128 (128)
Q Consensus 73 ~~L~~l~l~~~~~~~~--~~~~~--~~~~~L~~l~l~~n~~~~--~~~-~~~~~~~~L~~l~l 128 (128)
++|+++++++|.+.+. .+..+ ..+++|++|++++|.+.+ .++ ..+..+++|+++++
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~L 235 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEEC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEEC
Confidence 9999999999987654 34444 788999999999998763 222 22346678877764
No 85
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.70 E-value=7.1e-17 Score=115.69 Aligned_cols=126 Identities=21% Similarity=0.127 Sum_probs=96.9
Q ss_pred CCCCcEEEecCCCCC-Cc-chhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhh--hhhcCCCc
Q 040556 1 MKFLQELLLDGTDIK-GL-PLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLS--VELLTGLV 76 (128)
Q Consensus 1 l~~L~~l~l~~~~~~-~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~ 76 (128)
+++|++|++++|... .+ +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+.. ++.+++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 467888999988544 55 567888899999999999888887888888999999999998887755544 77888899
Q ss_pred EEeecCCcccCcch-HHhhcCCCCcEEeeecCCCCCCCCcCcCCC--CCCCcc
Q 040556 77 VLNLKDWQYLSSLP-STINGLKSLKILNLSSCSKLENVPENLGKV--ESLEEL 126 (128)
Q Consensus 77 ~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~--~~L~~l 126 (128)
+|++++|.+.+..+ ..++++++|++|++++|.+.+..+..++.+ ++|+.+
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 99999888766543 567888889999998888776655555444 444443
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=6.3e-16 Score=98.87 Aligned_cols=119 Identities=27% Similarity=0.296 Sum_probs=97.7
Q ss_pred CCCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++|++|++++|.++.++. +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+. +.++.+++|+++++
T Consensus 89 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 89 LKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL 163 (291)
T ss_dssp CTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred CCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEc
Confidence 4689999999999988664 78899999999999987664 3478899999999999987765 56788999999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|+.+++
T Consensus 164 ~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l 207 (291)
T 1h6t_A 164 EDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLEL 207 (291)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEE
T ss_pred cCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 9998766444 8889999999999998765 34 4788888887763
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=6e-17 Score=105.03 Aligned_cols=126 Identities=24% Similarity=0.324 Sum_probs=61.2
Q ss_pred CCCcEEEecCCCCC-CcchhhhccCcccEEeccCC-CCcc-cchhhhcccccCCEEecCCC-CCccc-chhhhhhcC-CC
Q 040556 2 KFLQELLLDGTDIK-GLPLSIVLLSGIVQLDLKGC-KNIS-CLSNFISALKFLSTLNLSDG-TAIRE-LSLSVELLT-GL 75 (128)
Q Consensus 2 ~~L~~l~l~~~~~~-~~~~~~~~l~~L~~l~l~~~-~~~~-~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L 75 (128)
++|++|++++|.+. ..+..+..+++|++|++++| .+.+ ..+..+..+++|+.|++++| .+.+. ++..+..++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 34555555555544 33444445555555555555 2332 13333444555555555555 44332 334444555 55
Q ss_pred cEEeecCCc--cc-CcchHHhhcCCCCcEEeeecCC-CCCCCCcCcCCCCCCCccc
Q 040556 76 VVLNLKDWQ--YL-SSLPSTINGLKSLKILNLSSCS-KLENVPENLGKVESLEELD 127 (128)
Q Consensus 76 ~~l~l~~~~--~~-~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~L~~l~ 127 (128)
+++++++|. +. ..++..+.++++|++|++++|. +.+..+..++.+++|++|+
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 555555552 22 2334444555555666665555 3334444455555555554
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=5.6e-16 Score=99.79 Aligned_cols=119 Identities=20% Similarity=0.208 Sum_probs=54.6
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccch---------------
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELS--------------- 66 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------------- 66 (128)
++|++|++++|.++.++ .+..+++|++|++++|.+.+. +. +..+++|+.|++++|.+.+..+
T Consensus 85 ~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 85 TKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA 161 (308)
T ss_dssp CSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCC
Confidence 44555555555555443 344455555555555543332 11 3444444444444444332211
Q ss_pred -----hhhhhcCCCcEEeecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 67 -----LSVELLTGLVVLNLKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 67 -----~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
+.+..+++|+.+++++|.+.+. +. +..+++|+++++++|.+.+.. .+..+++|+.++
T Consensus 162 ~l~~~~~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~ 223 (308)
T 1h6u_A 162 QVSDLTPLANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVT 223 (308)
T ss_dssp CCCCCGGGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEE
T ss_pred cCCCChhhcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEE
Confidence 0144445555555555543332 21 445555555555555544322 245555555543
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=8.6e-16 Score=98.95 Aligned_cols=119 Identities=24% Similarity=0.297 Sum_probs=74.2
Q ss_pred CCCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++|++|++++|.+..++. +..+++|++|++++|.+.+. + .+..+++|+.|++++|.+.+. + .+..+++|+++++
T Consensus 62 l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l 136 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYL 136 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEEC
Confidence 3556667777776666554 66667777777777764443 2 356677777777777766543 2 2666777777777
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+. +. +..+++|++|++++|.+.+. +. ++.+++|+.+++
T Consensus 137 ~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 137 DLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKA 180 (308)
T ss_dssp CSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEEC
T ss_pred CCCccCcC-cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEEC
Confidence 77765443 22 66667777777777765542 32 566666666543
No 90
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=2.2e-16 Score=93.37 Aligned_cols=113 Identities=20% Similarity=0.150 Sum_probs=95.4
Q ss_pred CCCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccc-hhhhhhcCCCcEEe
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIREL-SLSVELLTGLVVLN 79 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l~ 79 (128)
+++|++|++++|.++.+ ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.. +..+..+++|++++
T Consensus 48 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp GGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred CCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 36799999999999977 67888999999999999988877877778999999999999887642 36788999999999
Q ss_pred ecCCcccCcch---HHhhcCCCCcEEeeecCCCCCCCCc
Q 040556 80 LKDWQYLSSLP---STINGLKSLKILNLSSCSKLENVPE 115 (128)
Q Consensus 80 l~~~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~~~ 115 (128)
+++|.+.+..+ ..+..+++|+++++++|.... +|.
T Consensus 127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~ 164 (168)
T 2ell_A 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE-APD 164 (168)
T ss_dssp CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB-CCS
T ss_pred eeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh-ccc
Confidence 99998776544 478899999999999998533 343
No 91
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=5.5e-16 Score=100.48 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=82.2
Q ss_pred CCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcc--cchhhhccc---------------------ccCCEEecCC
Q 040556 3 FLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNIS--CLSNFISAL---------------------KFLSTLNLSD 58 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~--~~~~~~~~l---------------------~~L~~L~l~~ 58 (128)
+|++|++++|.+..++. .+..+++|+++++++|.+.. ..+..+..+ ++|+.|++++
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~ 201 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDG 201 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTT
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCC
Confidence 45666666666654432 34555555555555555432 223333333 4556666666
Q ss_pred CCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 59 GTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 59 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+++++++|.+. .+|..+..+++|+++++
T Consensus 202 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence 6666655677778888888888888877666667788888889999888865 56777888888887764
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=8.1e-16 Score=97.12 Aligned_cols=115 Identities=21% Similarity=0.255 Sum_probs=60.1
Q ss_pred CCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecC
Q 040556 3 FLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKD 82 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 82 (128)
+|++|++++|.+..++. +..+++|+.|++++|.+.+. +. +.. ++|+.|++++|.+.+. +.+..+++|+.+++++
T Consensus 64 ~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 64 NLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRN 137 (263)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTT
T ss_pred CCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCC
Confidence 34444444444444433 44444444444444443322 11 111 4445555555444432 2456667777777777
Q ss_pred CcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 83 WQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
|.+.+ ++ .+..+++|++|++++|.+.+. ..+..+++|+.++
T Consensus 138 N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 138 NKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWID 178 (263)
T ss_dssp SCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEE
T ss_pred CcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEe
Confidence 76544 33 466677777777777776554 4466666666654
No 93
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=3.5e-16 Score=90.84 Aligned_cols=104 Identities=17% Similarity=0.116 Sum_probs=90.3
Q ss_pred CCCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCccc-chhhhhhcCCCcEEe
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRE-LSLSVELLTGLVVLN 79 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~ 79 (128)
+++|++|++++|.++.+ ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+. .+..++.+++|++++
T Consensus 41 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp CTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred cCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence 46899999999999977 6788899999999999998887888788899999999999998774 347788999999999
Q ss_pred ecCCcccCcch---HHhhcCCCCcEEeee
Q 040556 80 LKDWQYLSSLP---STINGLKSLKILNLS 105 (128)
Q Consensus 80 l~~~~~~~~~~---~~~~~~~~L~~l~l~ 105 (128)
+++|.+.+..+ ..+..+++|++++++
T Consensus 120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 120 LFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99998776544 468889999999875
No 94
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=4.2e-16 Score=100.69 Aligned_cols=123 Identities=16% Similarity=0.101 Sum_probs=91.9
Q ss_pred CCCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhh-cccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 2 KFLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFI-SALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
++|++|++++|.+..++. .+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+... + ....+++|++++
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~ 197 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLD 197 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEE
Confidence 467777777777776543 66778888888888888777666655 3678888888888877654 2 223478889999
Q ss_pred ecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 80 LKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
+++|.+.+ +|..+..+++|+++++++|.+. .+|..+..+++|+.+++
T Consensus 198 Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244 (317)
T ss_dssp CCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred CCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEc
Confidence 98887654 5555888889999999998876 46777888888888764
No 95
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=3e-16 Score=106.67 Aligned_cols=123 Identities=17% Similarity=0.117 Sum_probs=89.3
Q ss_pred CCCcEEEecCCCCCCc-chhhhccCcccEEeccCCCCcccchhhhc-ccccCCEEecCCCCCcccchhhhhhcCCCcEEe
Q 040556 2 KFLQELLLDGTDIKGL-PLSIVLLSGIVQLDLKGCKNISCLSNFIS-ALKFLSTLNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
++|+.|++++|.+..+ +..+..+++|++|++++|.+.+..|..+. .+++|+.|++++|.+.+.. ....+++|+.++
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~ 197 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLD 197 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEE
Confidence 4567777777777754 44666778888888888887776666664 6778888888887776542 223577888888
Q ss_pred ecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 80 LKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
+++|.+.+ +|+.+..+++|+.+++++|.+.+ +|..++.+++|+.+++
T Consensus 198 Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL 244 (487)
T ss_dssp CCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred CCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence 88887665 44557788888899998888764 6777788888887764
No 96
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.68 E-value=4.8e-16 Score=92.66 Aligned_cols=105 Identities=18% Similarity=0.097 Sum_probs=88.5
Q ss_pred cEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCc
Q 040556 5 QELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQ 84 (128)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 84 (128)
+.++++++.++.+|..+. +++++|++++|.+.+..|..+..+++|+.|++++|++.+..+..+..+++|+++++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 578889999988887653 789999999999888888888999999999999998887655567889999999999998
Q ss_pred ccCcchHHhhcCCCCcEEeeecCCCCC
Q 040556 85 YLSSLPSTINGLKSLKILNLSSCSKLE 111 (128)
Q Consensus 85 ~~~~~~~~~~~~~~L~~l~l~~n~~~~ 111 (128)
+.+..+..+..+++|+++++++|.+..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 776555558889999999999998654
No 97
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=2.1e-16 Score=111.83 Aligned_cols=108 Identities=24% Similarity=0.231 Sum_probs=91.6
Q ss_pred cchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcC
Q 040556 17 LPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGL 96 (128)
Q Consensus 17 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 96 (128)
.+..+..++.|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3556778899999999999966 66666778999999999999888 78888999999999999999977 779889999
Q ss_pred CCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 97 KSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 97 ~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|++|++++|.+. .+|..++.+++|++|++
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEEC
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeC
Confidence 99999999999865 77888999999999875
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=1.2e-15 Score=106.04 Aligned_cols=119 Identities=25% Similarity=0.260 Sum_probs=54.3
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccc----------------
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIREL---------------- 65 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---------------- 65 (128)
++|+.|++++|.+..++. +..+++|+.|++++|.+... + .+..+++|+.|++++|.+....
T Consensus 65 ~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN 141 (605)
T ss_dssp TTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSS
T ss_pred CCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCC
Confidence 445555555555554443 44455555555555543321 1 2344444444444444433210
Q ss_pred ----hhhhhhcCCCcEEeecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 66 ----SLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 66 ----~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
...+..+++|+.|++++|.+.+..| +..+++|++|++++|.+.+. +.+..+++|+.|+
T Consensus 142 ~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 142 KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLE 203 (605)
T ss_dssp CCCCCGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEE
T ss_pred ccCCchhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEE
Confidence 0234444455555555544433322 44455555555555554332 2345555555544
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=1.2e-15 Score=106.06 Aligned_cols=105 Identities=30% Similarity=0.319 Sum_probs=86.0
Q ss_pred CCCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++|++|++++|.+..++ .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 108 l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp CTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence 456778888888777654 577788899999998887665 457889999999999998877555 889999999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLEN 112 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 112 (128)
++|.+.. ++ .+..+++|+.|++++|.+.+.
T Consensus 183 s~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 183 SKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred cCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 9998665 44 588999999999999997664
No 100
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.67 E-value=6e-16 Score=106.58 Aligned_cols=120 Identities=18% Similarity=0.084 Sum_probs=104.5
Q ss_pred CcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCC
Q 040556 4 LQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDW 83 (128)
Q Consensus 4 L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 83 (128)
.++++++++.++++|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+.+..|..++.+++|++|++++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 4689999999999987654 79999999999988888888999999999999999998887888999999999999999
Q ss_pred cccCcchHHhhcCCCCcEEeeecCCCCC-CCCcCcCCCCCCCcccC
Q 040556 84 QYLSSLPSTINGLKSLKILNLSSCSKLE-NVPENLGKVESLEELDI 128 (128)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~L~~l~l 128 (128)
.+. .+|.. .+++|++|++++|.+.+ ..|..++++++|+++++
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L 153 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEE
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEec
Confidence 865 56665 78999999999999876 45678999999998864
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=8.9e-17 Score=100.00 Aligned_cols=125 Identities=14% Similarity=0.077 Sum_probs=64.8
Q ss_pred CCCcEEEecCCC-CCCcch-hhhccCcccEEeccC-CCCcccchhhhcccccCCEEecCCCCCc----------------
Q 040556 2 KFLQELLLDGTD-IKGLPL-SIVLLSGIVQLDLKG-CKNISCLSNFISALKFLSTLNLSDGTAI---------------- 62 (128)
Q Consensus 2 ~~L~~l~l~~~~-~~~~~~-~~~~l~~L~~l~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~---------------- 62 (128)
++|++|++++|. ++.++. .+..+++|++|++++ |.+....+..+..+++|+.|++++|.+.
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~ 134 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFI 134 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccE
Confidence 456666666664 555543 455566666666665 5544444444555555555555555443
Q ss_pred ----------ccchhhhhhcCCCc-EEeecCCcccCcchHHhhcCCCCcEEeeecCC-CCCCCCcCcCCC-CCCCccc
Q 040556 63 ----------RELSLSVELLTGLV-VLNLKDWQYLSSLPSTINGLKSLKILNLSSCS-KLENVPENLGKV-ESLEELD 127 (128)
Q Consensus 63 ----------~~~~~~~~~l~~L~-~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~-~~L~~l~ 127 (128)
...+..+..+++|+ .+++++|.+. .+|......++|+++++++|. +.+..+..++.+ ++|+.++
T Consensus 135 L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp EEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred EECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 32233345555555 5555555543 333322222556666666653 443333445555 5565554
No 102
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.66 E-value=1.3e-15 Score=98.90 Aligned_cols=122 Identities=19% Similarity=0.184 Sum_probs=77.1
Q ss_pred CCCcEEEecCCCCCCcc-hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLP-LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++++|++++|.+..++ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.. +|..+. ++|+++++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEEC
Confidence 35667777777776553 356677777777777777666666667777777777777766553 333332 56777777
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCC--CCCcCcCCCCCCCccc
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLE--NVPENLGKVESLEELD 127 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~--~~~~~~~~~~~L~~l~ 127 (128)
++|.+....+..+.++++|+++++++|.+.. ..+..++.+ +|++++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence 7776555444556677777777777777642 334444444 444443
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.5e-15 Score=95.94 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=97.4
Q ss_pred CCCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++|++|++++|.++.++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. +. +.. ++|+++++
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L 113 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFL 113 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEEC
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEc
Confidence 367899999999999887 78889999999999999766555 88999999999999988763 32 223 88999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+ ++ .+..+++|++|++++|.+.+. + .++.+++|+.+++
T Consensus 114 ~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 114 DNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDL 157 (263)
T ss_dssp CSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEEC
T ss_pred cCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEEC
Confidence 9998665 34 588999999999999997664 3 5788899988865
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=3.4e-16 Score=100.80 Aligned_cols=124 Identities=20% Similarity=0.193 Sum_probs=59.4
Q ss_pred CCcEEEecCCCCCC-cc----hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCccc--ch--hhhhhcC
Q 040556 3 FLQELLLDGTDIKG-LP----LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRE--LS--LSVELLT 73 (128)
Q Consensus 3 ~L~~l~l~~~~~~~-~~----~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~--~~~~~l~ 73 (128)
+|++|++++|.+.. .+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+ ..++.++
T Consensus 118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 197 (310)
T 4glp_A 118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP 197 (310)
T ss_dssp CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence 44555555555442 11 1223355556666665555454445555555666666666554331 11 1123455
Q ss_pred CCcEEeecCCcccCcchH----HhhcCCCCcEEeeecCCCCCCCCcCcCCC---CCCCccc
Q 040556 74 GLVVLNLKDWQYLSSLPS----TINGLKSLKILNLSSCSKLENVPENLGKV---ESLEELD 127 (128)
Q Consensus 74 ~L~~l~l~~~~~~~~~~~----~~~~~~~L~~l~l~~n~~~~~~~~~~~~~---~~L~~l~ 127 (128)
+|+++++++|.+.. ++. .+..+++|++|++++|.+.+..|..++.+ ++|++++
T Consensus 198 ~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~ 257 (310)
T 4glp_A 198 AIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLN 257 (310)
T ss_dssp CCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEE
T ss_pred CCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEE
Confidence 55555555555431 121 13445555666666555555444444444 3555444
No 105
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.65 E-value=3.4e-15 Score=100.84 Aligned_cols=116 Identities=22% Similarity=0.220 Sum_probs=57.8
Q ss_pred CCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecC
Q 040556 3 FLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKD 82 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 82 (128)
+|++|++++|.+..++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.+++++
T Consensus 266 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 266 KLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340 (466)
T ss_dssp TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCS
T ss_pred CCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCC
Confidence 34444444444443332 3444455555555554333322 4445555555555555444322 44555555555555
Q ss_pred CcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 83 WQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
|.+.+. ..+..+++|+++++++|.+.+..| +..+++|+.++
T Consensus 341 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 381 (466)
T 1o6v_A 341 NKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381 (466)
T ss_dssp SCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEE
T ss_pred CccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEe
Confidence 554432 235556666666666666555433 55566665554
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=7.3e-16 Score=99.94 Aligned_cols=128 Identities=24% Similarity=0.267 Sum_probs=101.2
Q ss_pred CCCCcEEEecCC-CCC--CcchhhhccCcccEEeccCC-CCccc-chhhhcccc-cCCEEecCCC--CCc-ccchhhhhh
Q 040556 1 MKFLQELLLDGT-DIK--GLPLSIVLLSGIVQLDLKGC-KNISC-LSNFISALK-FLSTLNLSDG--TAI-RELSLSVEL 71 (128)
Q Consensus 1 l~~L~~l~l~~~-~~~--~~~~~~~~l~~L~~l~l~~~-~~~~~-~~~~~~~l~-~L~~L~l~~~--~~~-~~~~~~~~~ 71 (128)
+++|++|++++| .++ .++..+..+++|++|++++| .+.+. .+..+..++ +|+.|++++| .+. ..++..+..
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 478999999999 677 36667888999999999999 76654 566678899 9999999998 444 456677788
Q ss_pred cCCCcEEeecCCc-ccCcchHHhhcCCCCcEEeeecCC-CCCCCCcCcCCCCCCCcccC
Q 040556 72 LTGLVVLNLKDWQ-YLSSLPSTINGLKSLKILNLSSCS-KLENVPENLGKVESLEELDI 128 (128)
Q Consensus 72 l~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~L~~l~l 128 (128)
+++|+.+++++|. +....+..+..+++|++|++++|. +.......++.+++|+.+++
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence 9999999999998 555667788899999999999985 22222235778888888864
No 107
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.65 E-value=9.9e-16 Score=99.39 Aligned_cols=121 Identities=15% Similarity=0.169 Sum_probs=103.3
Q ss_pred CCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecC
Q 040556 3 FLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKD 82 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 82 (128)
+++.++++++.++.+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|+++++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 5788999999998888655 36899999999998877777899999999999999999888888999999999999999
Q ss_pred CcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 83 WQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
|.+. .+|..+. ++|+++++++|.+.+..+..++.+++|+++++
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence 9865 5555443 78999999999987765666889999998864
No 108
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.65 E-value=2e-15 Score=98.30 Aligned_cols=118 Identities=20% Similarity=0.172 Sum_probs=72.0
Q ss_pred CcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCC
Q 040556 4 LQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDW 83 (128)
Q Consensus 4 L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 83 (128)
|+.+++++|.+..++. +..+++|++|++++|.+....+ +..+++|+.|++++|.+... +.+..+++|+++++++|
T Consensus 201 L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 201 LHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp CCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred cceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCC
Confidence 3444444444443322 4555666666666666444333 55666777777776665542 34566777777777777
Q ss_pred cccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 84 QYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
.+... +.+..+++|+++++++|.+.+..+..++.+++|+++++
T Consensus 276 ~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 276 QISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred ccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 65443 34667777777777777776666666777777777654
No 109
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.63 E-value=8.8e-15 Score=98.83 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=64.0
Q ss_pred CCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecC
Q 040556 3 FLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKD 82 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 82 (128)
+|++|++++|.+..++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ ++.+++|+.+++++
T Consensus 244 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 318 (466)
T ss_dssp TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCS
T ss_pred CCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcC
Confidence 44445555544443332 4445555555555555443322 4455566666666655544322 45566666666666
Q ss_pred CcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 83 WQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
|.+.+..| +..+++|+++++++|.+.+. +.++.+++|+.+++
T Consensus 319 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 319 NNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA 360 (466)
T ss_dssp SCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred CcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeC
Confidence 66554433 55666677777776665543 34666677766653
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=7.9e-16 Score=99.09 Aligned_cols=125 Identities=17% Similarity=0.139 Sum_probs=86.3
Q ss_pred CCCCcEEEecCCCCCCcc-hhhhccCcccEEeccCCCCccc--ch--hhhcccccCCEEecCCCCCccc--chh-hhhhc
Q 040556 1 MKFLQELLLDGTDIKGLP-LSIVLLSGIVQLDLKGCKNISC--LS--NFISALKFLSTLNLSDGTAIRE--LSL-SVELL 72 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~--~~--~~~~~l~~L~~L~l~~~~~~~~--~~~-~~~~l 72 (128)
+++|++|++++|.+..++ ..+..+++|++|++++|.+.+. .+ ..+..+++|++|++++|.+... .+. .++.+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 467889999999988654 5677888999999999986543 22 2235678888888888877532 111 24567
Q ss_pred CCCcEEeecCCcccCcchHHhhcC---CCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 73 TGLVVLNLKDWQYLSSLPSTINGL---KSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 73 ~~L~~l~l~~~~~~~~~~~~~~~~---~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|+++++++|.+.+..|..+..+ ++|++|++++|.+. .+|..+. ++|+++++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDL 279 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEEC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEEC
Confidence 888888888888776666666655 57888888877765 4555443 56665553
No 111
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.63 E-value=8.1e-18 Score=102.12 Aligned_cols=123 Identities=22% Similarity=0.232 Sum_probs=87.6
Q ss_pred CCCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++|++|++++|.++.+| .+..+++|++|++++|.+. ..|..+..+++|+.|++++|.+.+ ++ .++.+++|+++++
T Consensus 47 l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM 122 (198)
T ss_dssp TTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred CCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence 356788888888887777 7777888888888888754 456556667788888888877665 33 5777788888888
Q ss_pred cCCcccCcch-HHhhcCCCCcEEeeecCCCCCCCCcC----------cCCCCCCCccc
Q 040556 81 KDWQYLSSLP-STINGLKSLKILNLSSCSKLENVPEN----------LGKVESLEELD 127 (128)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~----------~~~~~~L~~l~ 127 (128)
++|.+....+ ..+..+++|+++++++|.+.+..|.. +..+++|+.+|
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 8887554222 35777888888888888765554432 56677777664
No 112
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=1.1e-15 Score=103.82 Aligned_cols=122 Identities=14% Similarity=-0.019 Sum_probs=94.3
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhh-hcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVE-LLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l 80 (128)
++|++|++++|.+..++. ..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++
T Consensus 99 ~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp TTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 345666666666665443 2467889999999998888787888899999999999998887777765 6889999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+.+. +. ...+++|++|++++|.+.+ +|+.++.+++|+.+++
T Consensus 177 s~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 177 QYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL 221 (487)
T ss_dssp TTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred CCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEe
Confidence 99986654 32 3468899999999999776 4555888888888775
No 113
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=8.7e-16 Score=101.48 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=6.7
Q ss_pred hhccCcccEEeccCCC
Q 040556 21 IVLLSGIVQLDLKGCK 36 (128)
Q Consensus 21 ~~~l~~L~~l~l~~~~ 36 (128)
+..+++|++|++++|.
T Consensus 118 l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 118 LSKHTPLEHLYLHNNG 133 (386)
T ss_dssp HHHCTTCCEEECCSSC
T ss_pred HHhCCCCCEEECcCCC
Confidence 3334444444444444
No 114
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=3.5e-15 Score=96.39 Aligned_cols=122 Identities=14% Similarity=-0.019 Sum_probs=92.1
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhh-hhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSV-ELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~l~l 80 (128)
++|++|++++|.+..++. ..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+ ..+++|+++++
T Consensus 99 ~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 99 PSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp TTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 356666666666664432 236788999999998877777778888999999999998887666655 36889999999
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|.+... +. ...+++|+++++++|.+.+ ++..+..+++|+.+++
T Consensus 177 ~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 177 QYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL 221 (317)
T ss_dssp TTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred CCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEEC
Confidence 99986554 32 3357889999999998765 4556888888888875
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=6.4e-15 Score=87.79 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=88.9
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchh--hhhhcCCCcEEe
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSL--SVELLTGLVVLN 79 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~l~ 79 (128)
++|++|++++|.++.+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. .+. .+..+++|+.++
T Consensus 42 ~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLC 119 (176)
T ss_dssp TCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEE
Confidence 4799999999999977 578889999999999999776655556889999999999998854 444 788899999999
Q ss_pred ecCCcccCcchH----HhhcCCCCcEEeeecCCC
Q 040556 80 LKDWQYLSSLPS----TINGLKSLKILNLSSCSK 109 (128)
Q Consensus 80 l~~~~~~~~~~~----~~~~~~~L~~l~l~~n~~ 109 (128)
+++|.+.. +|. .+..+++|+++++++|..
T Consensus 120 l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 120 ILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred ecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 99998764 455 488999999999998875
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=2.2e-15 Score=99.53 Aligned_cols=127 Identities=14% Similarity=0.113 Sum_probs=84.0
Q ss_pred CCCcEEEecCCCCC--Ccc---hhhhccCcccEEeccCCCCcc-----cchhhhcccccCCEEecCCCCCc----ccchh
Q 040556 2 KFLQELLLDGTDIK--GLP---LSIVLLSGIVQLDLKGCKNIS-----CLSNFISALKFLSTLNLSDGTAI----RELSL 67 (128)
Q Consensus 2 ~~L~~l~l~~~~~~--~~~---~~~~~l~~L~~l~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~ 67 (128)
++|++|++++|.+. .++ ..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+. ..++.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 56777777777775 233 345567778888888777652 23325667777888888887764 44566
Q ss_pred hhhhcCCCcEEeecCCcccCc----chHHhhc--CCCCcEEeeecCCCCC----CCCcCc-CCCCCCCcccC
Q 040556 68 SVELLTGLVVLNLKDWQYLSS----LPSTING--LKSLKILNLSSCSKLE----NVPENL-GKVESLEELDI 128 (128)
Q Consensus 68 ~~~~l~~L~~l~l~~~~~~~~----~~~~~~~--~~~L~~l~l~~n~~~~----~~~~~~-~~~~~L~~l~l 128 (128)
.+..+++|++|++++|.+... ++..+.. +++|++|++++|.+.+ .+|..+ .++++|+++++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 677777788888887776554 4455533 6778888888777665 355555 45677776653
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.56 E-value=4.2e-14 Score=95.53 Aligned_cols=113 Identities=22% Similarity=0.184 Sum_probs=76.2
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeec
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLK 81 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 81 (128)
++|++|++++|.++++| .+..+++|++|++++|.+.+. | +..+++|++|++++|.+.+. + ++.+++|++++++
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD 114 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence 56788888888887765 577778888888888876554 3 66777788888877776653 2 5667777777777
Q ss_pred CCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 82 DWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
+|.+.+ ++ ++.+++|+++++++|.+.+. + ++.+++|++++
T Consensus 115 ~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~ 154 (457)
T 3bz5_A 115 TNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELD 154 (457)
T ss_dssp SSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEE
T ss_pred CCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEE
Confidence 776554 33 56667777777777765542 2 44455555443
No 118
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.56 E-value=2.1e-15 Score=101.37 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=61.3
Q ss_pred CCCcEEEecCCCCCC-----cchhhhccCcccEEeccCCCCcccchhhhcc-----cccCCEEecCCCCCccc----chh
Q 040556 2 KFLQELLLDGTDIKG-----LPLSIVLLSGIVQLDLKGCKNISCLSNFISA-----LKFLSTLNLSDGTAIRE----LSL 67 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~-----~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~----~~~ 67 (128)
++|++|++++|.++. ++..+..+++|++|++++|.+....+..+.. .++|+.|++++|.+... ++.
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence 355666666665553 3444555666666666666544332222221 13555555555554432 233
Q ss_pred hhhhcCCCcEEeecCCcccCcchHHhhc-----CCCCcEEeeecCCCCC----CCCcCcCCCCCCCccc
Q 040556 68 SVELLTGLVVLNLKDWQYLSSLPSTING-----LKSLKILNLSSCSKLE----NVPENLGKVESLEELD 127 (128)
Q Consensus 68 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~-----~~~L~~l~l~~n~~~~----~~~~~~~~~~~L~~l~ 127 (128)
.+..+++|+++++++|.+....+..+.. .++|++|++++|.+.+ .++..+..+++|++++
T Consensus 336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 3444555555655555544332222221 3455555555555443 3444444455555544
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=1.1e-14 Score=95.52 Aligned_cols=84 Identities=18% Similarity=0.120 Sum_probs=38.8
Q ss_pred CcEEEecCCCCCCcc-----hhhhccC-cccEEeccCCCCcccchhhhccc-----ccCCEEecCCCCCcccchhhhhh-
Q 040556 4 LQELLLDGTDIKGLP-----LSIVLLS-GIVQLDLKGCKNISCLSNFISAL-----KFLSTLNLSDGTAIRELSLSVEL- 71 (128)
Q Consensus 4 L~~l~l~~~~~~~~~-----~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~- 71 (128)
|++|++++|.++..+ ..+..++ +|++|++++|.+....+..+..+ ++|+.|++++|.+.+..+..+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 555555555555332 3334444 45555555555444444333332 45555555555544433332222
Q ss_pred ---c-CCCcEEeecCCcccC
Q 040556 72 ---L-TGLVVLNLKDWQYLS 87 (128)
Q Consensus 72 ---l-~~L~~l~l~~~~~~~ 87 (128)
+ ++|+++++++|.+..
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGG
T ss_pred HHhCCCCccEEECcCCcCCc
Confidence 2 445555555544433
No 120
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.55 E-value=3.4e-14 Score=92.66 Aligned_cols=103 Identities=17% Similarity=0.033 Sum_probs=86.5
Q ss_pred EEEecCC-CCCCcchhhhccCcccEEeccC-CCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCC
Q 040556 6 ELLLDGT-DIKGLPLSIVLLSGIVQLDLKG-CKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDW 83 (128)
Q Consensus 6 ~l~l~~~-~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 83 (128)
.++.+++ .++.+|. +..+++|+.|++++ |.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4677777 8889998 88899999999996 8877777788999999999999999988888888899999999999999
Q ss_pred cccCcchHHhhcCCCCcEEeeecCCCC
Q 040556 84 QYLSSLPSTINGLKSLKILNLSSCSKL 110 (128)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~ 110 (128)
.+.+..+..+..+. |++|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 87654444444444 999999999875
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.54 E-value=7.5e-14 Score=94.28 Aligned_cols=113 Identities=17% Similarity=0.147 Sum_probs=68.6
Q ss_pred CCCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
+++|++|++++|.++.++ +..+++|++|++++|.+.+. + +..+++|++|++++|.+.+. + ++.+++|+++++
T Consensus 63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNC 134 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEEC
Confidence 456777788777777664 66677777777777775553 2 56677777777777766552 2 556667777777
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcc
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEEL 126 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l 126 (128)
++|.+.+. + ++.+++|+++++++|...+.+ .++.+++|+++
T Consensus 135 ~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 135 ARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 77665442 2 445555555555555433333 23444444444
No 122
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=6e-14 Score=83.24 Aligned_cols=100 Identities=19% Similarity=0.114 Sum_probs=83.9
Q ss_pred cccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCCcEEeee
Q 040556 26 GIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSLKILNLS 105 (128)
Q Consensus 26 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 105 (128)
..+.++++++.+.. .|..+ ..+++.|++++|.+.+..+..+..+++|+++++++|.+.+..+..+..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35789999998544 55433 3789999999999998888889999999999999999876666667899999999999
Q ss_pred cCCCCCCCCcCcCCCCCCCcccC
Q 040556 106 SCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 106 ~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
+|.+.+..+..++.+++|+++++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCccCEeCHHHhcCCCCCCEEEe
Confidence 99988766667899999998875
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.53 E-value=1.3e-14 Score=95.31 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=53.4
Q ss_pred CCcEEEecCCCCCCc-chhhhcc-----CcccEEeccCCCCcccchhhhcc----c-ccCCEEecCCCCCcccchhhhhh
Q 040556 3 FLQELLLDGTDIKGL-PLSIVLL-----SGIVQLDLKGCKNISCLSNFISA----L-KFLSTLNLSDGTAIRELSLSVEL 71 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~-~~~~~~l-----~~L~~l~l~~~~~~~~~~~~~~~----l-~~L~~L~l~~~~~~~~~~~~~~~ 71 (128)
+|++|++++|.++.. +..+..+ ++|++|++++|.+.+..+..+.. + ++|+.|++++|.+....+..+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 566666666666532 3333332 56666666666655444432222 2 55666666666554433333222
Q ss_pred -----cCCCcEEeecCCcccC----cchHHhhcCC-CCcEEeeecCCCCC
Q 040556 72 -----LTGLVVLNLKDWQYLS----SLPSTINGLK-SLKILNLSSCSKLE 111 (128)
Q Consensus 72 -----l~~L~~l~l~~~~~~~----~~~~~~~~~~-~L~~l~l~~n~~~~ 111 (128)
..+|+++++++|.+.. .++..+.... +|++|++++|.+.+
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 1355566665555443 2222333333 55555555555443
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=1.2e-13 Score=95.43 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=88.3
Q ss_pred CCCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccc-hhhhhhcCCCcEEe
Q 040556 1 MKFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIREL-SLSVELLTGLVVLN 79 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l~ 79 (128)
+++|+.|++++|.++.+|..+..+++|+.|++++|.+.+ +| .+..+++|+.|++++|.+.+.. |..++.+++|+.++
T Consensus 462 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp GTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred cccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 468999999999999999999999999999999999776 56 6899999999999999998876 89999999999999
Q ss_pred ecCCcccCcch---HHhhcCCCCcEEee
Q 040556 80 LKDWQYLSSLP---STINGLKSLKILNL 104 (128)
Q Consensus 80 l~~~~~~~~~~---~~~~~~~~L~~l~l 104 (128)
+++|.+.+..+ ..+..+++|+.|++
T Consensus 540 L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 540 LQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999776533 23445788888863
No 125
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=1.1e-13 Score=82.46 Aligned_cols=99 Identities=12% Similarity=0.071 Sum_probs=82.2
Q ss_pred ccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCCcEEeeec
Q 040556 27 IVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSLKILNLSS 106 (128)
Q Consensus 27 L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 106 (128)
-+.++++++.+ +..|..+ .++++.|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~~l~~~~n~l-~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRL-ASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCC-CccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 46789999985 5566544 37899999999999888788899999999999999987765555568899999999999
Q ss_pred CCCCCCCCcCcCCCCCCCcccC
Q 040556 107 CSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 107 n~~~~~~~~~~~~~~~L~~l~l 128 (128)
|.+.+..+..++.+++|+++++
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEEC
T ss_pred CccceeCHHHhccccCCCEEEe
Confidence 9987655556899999998875
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=1.3e-15 Score=92.40 Aligned_cols=111 Identities=21% Similarity=0.196 Sum_probs=90.4
Q ss_pred CCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHH
Q 040556 13 DIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPST 92 (128)
Q Consensus 13 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 92 (128)
.++.+|..+..+++|++|++++|.+.+ .| .+..+++|+.|++++|.+. .+|..+..+++|+.+++++|.+.+ +| .
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~ 110 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-G 110 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-H
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-c
Confidence 344556689999999999999998666 55 7888999999999998876 567777778999999999998665 55 5
Q ss_pred hhcCCCCcEEeeecCCCCCCCC-cCcCCCCCCCcccC
Q 040556 93 INGLKSLKILNLSSCSKLENVP-ENLGKVESLEELDI 128 (128)
Q Consensus 93 ~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l 128 (128)
+..+++|+++++++|.+.+..+ ..++.+++|+++++
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence 8888999999999999765322 35788899988763
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=4e-13 Score=92.87 Aligned_cols=93 Identities=22% Similarity=0.211 Sum_probs=40.3
Q ss_pred CcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCC
Q 040556 4 LQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDW 83 (128)
Q Consensus 4 L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 83 (128)
|++|++++|.++.+| ..+++|+.|++++|.+.+ +|. +.. +|+.|++++|.+.+ +|. .+++|+.|++++|
T Consensus 82 L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 82 ITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNN 150 (571)
T ss_dssp CSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred CCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCC
Confidence 444444444444444 223444455555444333 332 222 44445554444433 222 2344555555554
Q ss_pred cccCcchHHhhcCCCCcEEeeecCCCCC
Q 040556 84 QYLSSLPSTINGLKSLKILNLSSCSKLE 111 (128)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 111 (128)
.+.+ +|. .+++|++|++++|.+.+
T Consensus 151 ~l~~-lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 151 QLTM-LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred ccCc-CCC---cCCCcCEEECCCCCCCC
Confidence 4333 332 33445555555554433
No 128
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.46 E-value=5.2e-14 Score=94.63 Aligned_cols=83 Identities=17% Similarity=0.086 Sum_probs=40.3
Q ss_pred CCcEEEecCCCCCC-----cchhhhccCcccEEeccCCCCcccch-----hhhcccccCCEEecCCCCCccc----chhh
Q 040556 3 FLQELLLDGTDIKG-----LPLSIVLLSGIVQLDLKGCKNISCLS-----NFISALKFLSTLNLSDGTAIRE----LSLS 68 (128)
Q Consensus 3 ~L~~l~l~~~~~~~-----~~~~~~~l~~L~~l~l~~~~~~~~~~-----~~~~~l~~L~~L~l~~~~~~~~----~~~~ 68 (128)
+|++|++++|.++. ++..+..+++|+.|++++|.+..... ..+..+++|+.|++++|.+... ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 45555555555543 24444455556666666555443211 1112345555555555554432 3334
Q ss_pred hhhcCCCcEEeecCCcc
Q 040556 69 VELLTGLVVLNLKDWQY 85 (128)
Q Consensus 69 ~~~l~~L~~l~l~~~~~ 85 (128)
+..+++|+++++++|.+
T Consensus 280 l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 280 LRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHCTTCCEEECTTCCC
T ss_pred HhhCCCcceEECCCCCC
Confidence 44455555555555544
No 129
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=3e-13 Score=93.51 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=49.7
Q ss_pred CcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCC
Q 040556 4 LQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDW 83 (128)
Q Consensus 4 L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 83 (128)
|++|++++|.++.+|. .+++|+.|++++|.+.+ .|. .+++|+.|++++|.+.+ +|. ++ ++|+.|++++|
T Consensus 122 L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 122 LKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp CCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS
T ss_pred CCEEECCCCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC
Confidence 3334444444433332 33444444444444332 222 23455555555554443 333 32 45555555555
Q ss_pred cccCcchHHhhcCCCC-------cEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 84 QYLSSLPSTINGLKSL-------KILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 84 ~~~~~~~~~~~~~~~L-------~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
.+. .+|. +.. +| ++|++++|.+. .+|..+..+++|+.+++
T Consensus 191 ~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 191 LLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL 237 (571)
T ss_dssp CCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEEC
T ss_pred CCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEe
Confidence 543 3333 222 44 66666666544 34555555666665543
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.45 E-value=6.5e-13 Score=89.66 Aligned_cols=112 Identities=16% Similarity=0.157 Sum_probs=58.2
Q ss_pred CCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecC
Q 040556 3 FLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKD 82 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 82 (128)
+|++|++++|.++.+| .+..+++|++|++++|.+.+ .|.. ..+|++|++++|.+.+ +| .++.+++|+++++++
T Consensus 132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCC
Confidence 4556666666665555 35556666666666665443 2321 2355566666555444 23 355566666666666
Q ss_pred CcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 83 WQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
|.+.+ +|.. ..+|+++++++|.+. .+| .++.+++|++++
T Consensus 205 N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~ 243 (454)
T 1jl5_A 205 NSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIY 243 (454)
T ss_dssp SCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEE
T ss_pred CcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEE
Confidence 55443 2221 134555555555543 344 255555555554
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.38 E-value=1.1e-12 Score=85.85 Aligned_cols=105 Identities=10% Similarity=0.000 Sum_probs=55.4
Q ss_pred CCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccch-hhhcccccCCE-EecCCCCCcccchhhhhhcCCCcEEe
Q 040556 3 FLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLS-NFISALKFLST-LNLSDGTAIRELSLSVELLTGLVVLN 79 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~l~ 79 (128)
++++|++++|.++.+|. .|..+++|++|++++|.+.+..| ..|..++++.. +.+..|++....+..+..+++|++++
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 45566666666665554 35556666666666666544443 24455555543 33344444444455555666666666
Q ss_pred ecCCcccCcchHHhhcCCCCcEEeeecC
Q 040556 80 LKDWQYLSSLPSTINGLKSLKILNLSSC 107 (128)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~n 107 (128)
+++|.+....+..+.+...+..+++.++
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESC
T ss_pred ccccccccCCchhhcccchhhhhhhccc
Confidence 6666544433333334444555555543
No 132
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=4.1e-12 Score=82.83 Aligned_cols=97 Identities=16% Similarity=0.067 Sum_probs=79.3
Q ss_pred EEeccCC-CCcccchhhhcccccCCEEecCC-CCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCCcEEeeec
Q 040556 29 QLDLKGC-KNISCLSNFISALKFLSTLNLSD-GTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSLKILNLSS 106 (128)
Q Consensus 29 ~l~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 106 (128)
.++.+++ . ...+|. +..+++|+.|++++ |.+.+..+..++.+++|++|++++|.+.+..|..+.++++|++|++++
T Consensus 12 ~v~~~~~n~-l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGA-LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCC-CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCC-CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577777 5 445777 88899999999996 888877778899999999999999998887788899999999999999
Q ss_pred CCCCCCCCcCcCCCCCCCcccC
Q 040556 107 CSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 107 n~~~~~~~~~~~~~~~L~~l~l 128 (128)
|.+.+..+..+..++ |+.|++
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEEC
T ss_pred CccceeCHHHcccCC-ceEEEe
Confidence 998765444455444 777654
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.36 E-value=5.5e-12 Score=85.17 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=47.3
Q ss_pred CCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecC
Q 040556 3 FLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKD 82 (128)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 82 (128)
+|++|++++|.++++|.. .++|++|++++|.+.+. +. ..++|++|++++|.+.+ +| .++.+++|+++++++
T Consensus 92 ~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l-~~---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 92 HLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKAL-SD---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC-CS---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred CCCEEEccCCcCCccccc---cCCCcEEECCCCccCcc-cC---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCC
Confidence 345555555555444421 23444444444443221 11 01345555555554443 33 345555555555555
Q ss_pred CcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcc
Q 040556 83 WQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEEL 126 (128)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l 126 (128)
|.+.+ +|.. ..+|+++++++|.+.+ +| .++.+++|+++
T Consensus 163 N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L 200 (454)
T 1jl5_A 163 NSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAI 200 (454)
T ss_dssp SCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred CcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEE
Confidence 54332 2321 1245555555554433 23 34444444444
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.34 E-value=1.1e-11 Score=86.65 Aligned_cols=71 Identities=23% Similarity=0.172 Sum_probs=44.4
Q ss_pred ccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCCCcccC
Q 040556 49 KFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESLEELDI 128 (128)
Q Consensus 49 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 128 (128)
++|+.|++++|.+.+ +| ..+++|+.+++++|.+. .+|. .+++|++|++++|.+. .+|..++.+++|+.+++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 456666666665544 23 23456777777776644 3443 4566777777777765 55666777777777654
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.33 E-value=2.6e-12 Score=83.99 Aligned_cols=117 Identities=14% Similarity=0.065 Sum_probs=86.6
Q ss_pred cEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccch-hhhhhcCCCcE-EeecC
Q 040556 5 QELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELS-LSVELLTGLVV-LNLKD 82 (128)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-l~l~~ 82 (128)
++++.+++.++++|..+ .+++++|++++|.+....+..|..+++|++|++++|.+.+.++ ..|..+++++. +.+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 46777888888888765 3679999999999776666678999999999999998877655 45677887775 44455
Q ss_pred CcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCC
Q 040556 83 WQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESL 123 (128)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 123 (128)
|++....|..+..+++|+++++++|.+....+..+....++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 130 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 130 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSC
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchh
Confidence 66665556778889999999999998765443333333333
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=6.4e-13 Score=87.66 Aligned_cols=125 Identities=18% Similarity=0.101 Sum_probs=61.9
Q ss_pred CCcEEEecCCCCCC--cchhhhccCcccEEeccCCCCcccchhhh-----cccccCCEEecCCCCCccc----chhhhhh
Q 040556 3 FLQELLLDGTDIKG--LPLSIVLLSGIVQLDLKGCKNISCLSNFI-----SALKFLSTLNLSDGTAIRE----LSLSVEL 71 (128)
Q Consensus 3 ~L~~l~l~~~~~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~----~~~~~~~ 71 (128)
+|++|++++|.++. +......+++|+.|++++|.+.......+ ...++|+.|++++|.+... ++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 45566666665542 11122234556666666665544332222 1235566666666665431 2233345
Q ss_pred cCCCcEEeecCCcccCc----chHHhhcCCCCcEEeeecCCCCCC----CCcCcCCCCCCCccc
Q 040556 72 LTGLVVLNLKDWQYLSS----LPSTINGLKSLKILNLSSCSKLEN----VPENLGKVESLEELD 127 (128)
Q Consensus 72 l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~l~ 127 (128)
.++|++|++++|.+... ++..+...++|++|++++|.+.+. ++..+...++|++++
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~ 245 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH 245 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEe
Confidence 56666666666654431 233444555666666666665432 222233345555554
No 137
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.29 E-value=4e-12 Score=88.75 Aligned_cols=82 Identities=27% Similarity=0.288 Sum_probs=65.5
Q ss_pred CcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCCcEEee
Q 040556 25 SGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSLKILNL 104 (128)
Q Consensus 25 ~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 104 (128)
++|+.|++++|.+.+ .| ..+++|+.|++++|.+.. +|. .+++|+.+++++|.+. .+|..+.++++|+.+++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 667888888887554 34 456889999999998774 444 5688999999999866 67888999999999999
Q ss_pred ecCCCCCCCCc
Q 040556 105 SSCSKLENVPE 115 (128)
Q Consensus 105 ~~n~~~~~~~~ 115 (128)
++|.+.+..+.
T Consensus 292 ~~N~l~~~~~~ 302 (622)
T 3g06_A 292 EGNPLSERTLQ 302 (622)
T ss_dssp CSCCCCHHHHH
T ss_pred cCCCCCCcCHH
Confidence 99998765544
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=4.4e-11 Score=77.54 Aligned_cols=102 Identities=13% Similarity=0.050 Sum_probs=73.6
Q ss_pred cCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCc-EEeecCCcccCcchHHhhcCCCCcEE
Q 040556 24 LSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLV-VLNLKDWQYLSSLPSTINGLKSLKIL 102 (128)
Q Consensus 24 l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~-~l~l~~~~~~~~~~~~~~~~~~L~~l 102 (128)
+++|+.+++++|.+....+..|..+.+|+.+++..| +....+..|..|.+|+ .+.+.. .+...-+.++.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 567777777777766555566777888888888775 5555556677888888 888876 4444445677788888888
Q ss_pred eeecCCCCCCCCcCcCCCCCCCccc
Q 040556 103 NLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 103 ~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
++.+|.+....+.+|..+++|+.+.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 8877776665566788888887764
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.23 E-value=5.5e-12 Score=87.16 Aligned_cols=92 Identities=11% Similarity=0.019 Sum_probs=55.9
Q ss_pred hhccCcccEEeccCCC--Ccccchhhhc-ccccCCEEecCCCCCccc-chhhhhhcCCCcEEeecCCcccCc-chHHhhc
Q 040556 21 IVLLSGIVQLDLKGCK--NISCLSNFIS-ALKFLSTLNLSDGTAIRE-LSLSVELLTGLVVLNLKDWQYLSS-LPSTING 95 (128)
Q Consensus 21 ~~~l~~L~~l~l~~~~--~~~~~~~~~~-~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~ 95 (128)
+..+++|++|+++.|. +.+.....+. .+++|+.|++++|.+.+. ++..+..+++|+.|++++|.+... ++.....
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 4456666666665443 3333333332 366777777777776552 344455677788888887775433 3344456
Q ss_pred CCCCcEEeeecCCCCCC
Q 040556 96 LKSLKILNLSSCSKLEN 112 (128)
Q Consensus 96 ~~~L~~l~l~~n~~~~~ 112 (128)
+++|++|++++|.+++.
T Consensus 512 l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CSSCCEEEEESCBCCTT
T ss_pred cCccCeeECcCCcCCHH
Confidence 77788888888776554
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.23 E-value=1.1e-11 Score=85.59 Aligned_cols=34 Identities=18% Similarity=0.055 Sum_probs=15.2
Q ss_pred hhcCCCCcEEeeecCCCCCCCC-cCcCCCCCCCcc
Q 040556 93 INGLKSLKILNLSSCSKLENVP-ENLGKVESLEEL 126 (128)
Q Consensus 93 ~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~L~~l 126 (128)
+..+++|++|++++|.+.+... ..++.+++|++|
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L 323 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL 323 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEE
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEE
Confidence 3444555555555555332211 123445555544
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=4.7e-12 Score=83.58 Aligned_cols=127 Identities=16% Similarity=0.168 Sum_probs=92.6
Q ss_pred CCCcEEEecCCCCCCc-chhhhc-----cCcccEEeccCCCCcccchhhh-cccccCCEEecCCCCCcccchhhhh----
Q 040556 2 KFLQELLLDGTDIKGL-PLSIVL-----LSGIVQLDLKGCKNISCLSNFI-SALKFLSTLNLSDGTAIRELSLSVE---- 70 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~-~~~~~~-----l~~L~~l~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~---- 70 (128)
++++.+++++|.++.. ...+.. .++|+.|++++|.+.......+ ..+.+|+.|++++|.+.......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 5789999999999832 233332 2689999999999766544433 3467899999999988764443332
Q ss_pred -hcCCCcEEeecCCcccC----cchHHhhcCCCCcEEeeecCCCCCC----CCcCcCCCCCCCcccC
Q 040556 71 -LLTGLVVLNLKDWQYLS----SLPSTINGLKSLKILNLSSCSKLEN----VPENLGKVESLEELDI 128 (128)
Q Consensus 71 -~l~~L~~l~l~~~~~~~----~~~~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l 128 (128)
..+.|+.|++++|.+.. .++..+...+.|++|++++|.+.+. ++..+...++|++|++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEEC
Confidence 35789999999998654 2455567889999999999997643 2445666778888765
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.13 E-value=2.4e-11 Score=83.96 Aligned_cols=105 Identities=21% Similarity=0.228 Sum_probs=42.8
Q ss_pred CCcEEEecCCCCC-Ccchhhh-ccCcccEEeccCCCCccc--chhhhcccccCCEEecCCCCCcccchhhhh----hcCC
Q 040556 3 FLQELLLDGTDIK-GLPLSIV-LLSGIVQLDLKGCKNISC--LSNFISALKFLSTLNLSDGTAIRELSLSVE----LLTG 74 (128)
Q Consensus 3 ~L~~l~l~~~~~~-~~~~~~~-~l~~L~~l~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~l~~ 74 (128)
+|++|+++++.+. ..+..+. .+++|+.|++++|...+. .+.....+++|++|++++|.+.+..+..+. .+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 4555555555444 2222222 345555555555521211 222223455555555555543332222111 3345
Q ss_pred CcEEeecCCc--ccC-cchHHhhcCCCCcEEeeecC
Q 040556 75 LVVLNLKDWQ--YLS-SLPSTINGLKSLKILNLSSC 107 (128)
Q Consensus 75 L~~l~l~~~~--~~~-~~~~~~~~~~~L~~l~l~~n 107 (128)
|+.+++++|. +.. .++....++++|++|++++|
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 5555555443 110 11112233455555555554
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=3.6e-10 Score=73.25 Aligned_cols=102 Identities=13% Similarity=-0.025 Sum_probs=86.6
Q ss_pred CCCCcEEEecCCCCCCcch-hhhccCcccEEeccCCCCcccchhhhcccccCC-EEecCCCCCcccchhhhhhcCCCcEE
Q 040556 1 MKFLQELLLDGTDIKGLPL-SIVLLSGIVQLDLKGCKNISCLSNFISALKFLS-TLNLSDGTAIRELSLSVELLTGLVVL 78 (128)
Q Consensus 1 l~~L~~l~l~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~l 78 (128)
|++|+.+++++|.++.++. .|..|++|+.+++..| +....+..|..+.+|+ .+++.. .+....+..|..|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 4689999999999998875 6889999999999988 5666667899999999 999988 6666667889999999999
Q ss_pred eecCCcccCcchHHhhcCCCCcEEee
Q 040556 79 NLKDWQYLSSLPSTINGLKSLKILNL 104 (128)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~L~~l~l 104 (128)
++..+++...-+.++.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99888766655668889999998763
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.07 E-value=1.3e-10 Score=80.33 Aligned_cols=82 Identities=18% Similarity=0.139 Sum_probs=42.3
Q ss_pred hcccccCCEEecCCCCCcccchhhhhh-cCCCcEEeecCCcccCcchHHh-hcCCCCcEEeeecCCCCCCCCc-CcCCCC
Q 040556 45 ISALKFLSTLNLSDGTAIRELSLSVEL-LTGLVVLNLKDWQYLSSLPSTI-NGLKSLKILNLSSCSKLENVPE-NLGKVE 121 (128)
Q Consensus 45 ~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~n~~~~~~~~-~~~~~~ 121 (128)
+..+++|+.|++++ .+.......++. +++|+.+++++|.+.......+ ..+++|++|++++|.+.+.... .+..++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 34455666666654 344333333333 5666666666666544333333 4566677777776665332221 233455
Q ss_pred CCCccc
Q 040556 122 SLEELD 127 (128)
Q Consensus 122 ~L~~l~ 127 (128)
+|+.++
T Consensus 507 ~L~~L~ 512 (594)
T 2p1m_B 507 TMRSLW 512 (594)
T ss_dssp GSSEEE
T ss_pred CCCEEe
Confidence 555554
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.07 E-value=5.5e-10 Score=67.01 Aligned_cols=108 Identities=12% Similarity=0.140 Sum_probs=71.2
Q ss_pred CCCcEEEecCC-CCCC-----cchhhhccCcccEEeccCCCCcccc----hhhhcccccCCEEecCCCCCccc----chh
Q 040556 2 KFLQELLLDGT-DIKG-----LPLSIVLLSGIVQLDLKGCKNISCL----SNFISALKFLSTLNLSDGTAIRE----LSL 67 (128)
Q Consensus 2 ~~L~~l~l~~~-~~~~-----~~~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~----~~~ 67 (128)
+.|++|++++| .+.. +...+...++|++|++++|.+.... ...+...++|++|++++|.+... +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 46778888887 7762 2344555677888888888766432 33344556788888888877653 234
Q ss_pred hhhhcCCCcEEee--cCCcccCc----chHHhhcCCCCcEEeeecCCC
Q 040556 68 SVELLTGLVVLNL--KDWQYLSS----LPSTINGLKSLKILNLSSCSK 109 (128)
Q Consensus 68 ~~~~l~~L~~l~l--~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~ 109 (128)
.+...+.|+++++ .+|.+... +.+.+...+.|++|++++|.+
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4555677888888 66765543 334455667788888887764
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.94 E-value=3.1e-10 Score=71.66 Aligned_cols=79 Identities=27% Similarity=0.292 Sum_probs=44.8
Q ss_pred ccccCCEEecCCCCCcc--cchhhhhhcCCCcEEeecCCcccCcchHHhhcCC--CCcEEeeecCCCCCCCCc-------
Q 040556 47 ALKFLSTLNLSDGTAIR--ELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLK--SLKILNLSSCSKLENVPE------- 115 (128)
Q Consensus 47 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~--~L~~l~l~~n~~~~~~~~------- 115 (128)
.+++|+.|++++|.+.+ .++..+..+++|+.|++++|.+.+. ..+..++ .|++|++.+|++.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45667777777766655 3344555666777777776665543 1222233 667777777766554331
Q ss_pred CcCCCCCCCccc
Q 040556 116 NLGKVESLEELD 127 (128)
Q Consensus 116 ~~~~~~~L~~l~ 127 (128)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244555555554
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.93 E-value=2.9e-09 Score=63.19 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=65.4
Q ss_pred cCcccEEeccCCCCcccchhhhcccccCCEEecCCCC-Ccccchhhhhh----cCCCcEEeecCCc-ccCcchHHhhcCC
Q 040556 24 LSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGT-AIRELSLSVEL----LTGLVVLNLKDWQ-YLSSLPSTINGLK 97 (128)
Q Consensus 24 l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~----l~~L~~l~l~~~~-~~~~~~~~~~~~~ 97 (128)
-.+|+.+|+++|.++...-..+..+++|+.|++++|. ++...-..+.. +++|++|++++|. ++..--..+.+++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3479999999999776655667889999999999996 44443344444 3479999999986 4433334567889
Q ss_pred CCcEEeeecCCCCC
Q 040556 98 SLKILNLSSCSKLE 111 (128)
Q Consensus 98 ~L~~l~l~~n~~~~ 111 (128)
+|++|++++|...+
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 99999999987443
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.89 E-value=2.3e-09 Score=64.29 Aligned_cols=110 Identities=14% Similarity=0.079 Sum_probs=80.9
Q ss_pred hhhhccCcccEEeccCC-CCccc----chhhhcccccCCEEecCCCCCccc----chhhhhhcCCCcEEeecCCcccCc-
Q 040556 19 LSIVLLSGIVQLDLKGC-KNISC----LSNFISALKFLSTLNLSDGTAIRE----LSLSVELLTGLVVLNLKDWQYLSS- 88 (128)
Q Consensus 19 ~~~~~l~~L~~l~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~- 88 (128)
..+...+.|++|++++| .+... +...+...++|++|++++|.+... +...+...+.|++|++++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34556789999999999 86653 344456678999999999998653 334555668999999999987653
Q ss_pred ---chHHhhcCCCCcEEee--ecCCCCCC----CCcCcCCCCCCCcccC
Q 040556 89 ---LPSTINGLKSLKILNL--SSCSKLEN----VPENLGKVESLEELDI 128 (128)
Q Consensus 89 ---~~~~~~~~~~L~~l~l--~~n~~~~~----~~~~~~~~~~L~~l~l 128 (128)
+...+...+.|++|++ ++|.+..+ +...+...++|+++++
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L 158 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGY 158 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEec
Confidence 4556677789999999 88887654 3334455577777764
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.85 E-value=3e-08 Score=66.07 Aligned_cols=56 Identities=23% Similarity=0.178 Sum_probs=29.6
Q ss_pred CCCcEEEecCCCCCCcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCC
Q 040556 2 KFLQELLLDGTDIKGLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSD 58 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 58 (128)
++|+.+++..|.++.++.....+.+|+.+.+..+ +.......|..+.+|+.+.+..
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 4555666665555555443333455555555533 3333444556666666666654
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=3.5e-09 Score=69.68 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=19.0
Q ss_pred cCCCcEEeecCCcccCcchHHhh---cCCCCcEEeeecCCCCC
Q 040556 72 LTGLVVLNLKDWQYLSSLPSTIN---GLKSLKILNLSSCSKLE 111 (128)
Q Consensus 72 l~~L~~l~l~~~~~~~~~~~~~~---~~~~L~~l~l~~n~~~~ 111 (128)
+++|++|++.+|.+....+..+. .+++|++|+++.|.+.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 45555555555544332222222 24456666665555433
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.77 E-value=4e-08 Score=62.09 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=62.9
Q ss_pred hccCcccEEeccCCCCcc--cchhhhcccccCCEEecCCCCCcccchhhhhhcC--CCcEEeecCCcccCcch-------
Q 040556 22 VLLSGIVQLDLKGCKNIS--CLSNFISALKFLSTLNLSDGTAIRELSLSVELLT--GLVVLNLKDWQYLSSLP------- 90 (128)
Q Consensus 22 ~~l~~L~~l~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~l~l~~~~~~~~~~------- 90 (128)
..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.+.+. ..+..+. +|+.|++.+|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 458899999999999887 4456677899999999999998764 2233344 89999999999876444
Q ss_pred HHhhcCCCCcEEe
Q 040556 91 STINGLKSLKILN 103 (128)
Q Consensus 91 ~~~~~~~~L~~l~ 103 (128)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3467889999886
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.74 E-value=2.1e-08 Score=59.55 Aligned_cols=86 Identities=15% Similarity=0.072 Sum_probs=65.0
Q ss_pred CCcEEEecCCCCCC-cchhhhccCcccEEeccCCCCcc-cchhhhccc----ccCCEEecCCCC-CcccchhhhhhcCCC
Q 040556 3 FLQELLLDGTDIKG-LPLSIVLLSGIVQLDLKGCKNIS-CLSNFISAL----KFLSTLNLSDGT-AIRELSLSVELLTGL 75 (128)
Q Consensus 3 ~L~~l~l~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~~~~l~~L 75 (128)
.|+.|+++++.++. --..+..+++|+.|++++|...+ ..-..+..+ ++|+.|++++|. ++...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 47899999999873 34467889999999999997443 333345543 479999999986 555545567789999
Q ss_pred cEEeecCCcccCc
Q 040556 76 VVLNLKDWQYLSS 88 (128)
Q Consensus 76 ~~l~l~~~~~~~~ 88 (128)
++|++++|.-...
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 9999999974443
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.63 E-value=3e-07 Score=61.31 Aligned_cols=114 Identities=6% Similarity=-0.021 Sum_probs=72.8
Q ss_pred CcEEEecCCCCCCc-chhhhccCcccEEeccCCCCc-----ccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcE
Q 040556 4 LQELLLDGTDIKGL-PLSIVLLSGIVQLDLKGCKNI-----SCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVV 77 (128)
Q Consensus 4 L~~l~l~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 77 (128)
|+.+.+. +.++.+ ...|..|++|+.+.+.++... ...+..|..+++|+.+.+.. .+.......|..|.+|+.
T Consensus 250 L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 250 ITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp CSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCE
T ss_pred ccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccE
Confidence 4444442 234444 335677888888888776543 24445677888888888874 455555667778888888
Q ss_pred EeecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCC
Q 040556 78 LNLKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVE 121 (128)
Q Consensus 78 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 121 (128)
+.+..+ +...-..++.++ .|+.+.+.+|.........+..++
T Consensus 328 l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 328 LTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp EEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred EEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 888654 343334567777 888888888765444444455553
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.61 E-value=9.9e-08 Score=62.84 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=66.6
Q ss_pred CCCcEEEecCCCCC-Ccchhhh--ccCcccEEeccCC--CCcc-----cchhhh--cccccCCEEecCCCCCcccchhhh
Q 040556 2 KFLQELLLDGTDIK-GLPLSIV--LLSGIVQLDLKGC--KNIS-----CLSNFI--SALKFLSTLNLSDGTAIRELSLSV 69 (128)
Q Consensus 2 ~~L~~l~l~~~~~~-~~~~~~~--~l~~L~~l~l~~~--~~~~-----~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~ 69 (128)
++|+.|.+..+.++ +....+. .+++|+.|+++.+ ...+ .+...+ ..+++|+.|++.+|.+....+..+
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l 272 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence 34555555555444 1122232 5788888887532 1111 111122 247889999998888765433333
Q ss_pred h---hcCCCcEEeecCCcccCc----chHHhhcCCCCcEEeeecCCCCCC
Q 040556 70 E---LLTGLVVLNLKDWQYLSS----LPSTINGLKSLKILNLSSCSKLEN 112 (128)
Q Consensus 70 ~---~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~ 112 (128)
. .+++|++|+++.|.+... ++..+.++++|+.|++++|.+...
T Consensus 273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 2 467899999988876553 333345678899999998876543
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.25 E-value=1.6e-05 Score=52.37 Aligned_cols=103 Identities=12% Similarity=0.032 Sum_probs=43.4
Q ss_pred hhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCCc
Q 040556 21 IVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSLK 100 (128)
Q Consensus 21 ~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 100 (128)
+..+..|+.+.+..+ +.......|..+.+++.+.+.. .+.......+..|.+|+.+.+..+.+...-..++.++.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 344555555555433 2222233344444555554433 22222233444555555555544332222233444555555
Q ss_pred EEeeecCCCCCCCCcCcCCCCCCCcc
Q 040556 101 ILNLSSCSKLENVPENLGKVESLEEL 126 (128)
Q Consensus 101 ~l~l~~n~~~~~~~~~~~~~~~L~~l 126 (128)
.+.+..+ +...-..+|.+|.+|+.+
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 5555422 122122334445555443
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.19 E-value=1.2e-05 Score=53.24 Aligned_cols=86 Identities=7% Similarity=0.076 Sum_probs=48.4
Q ss_pred hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCC
Q 040556 20 SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSL 99 (128)
Q Consensus 20 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 99 (128)
.|..+..|+.+.+.. .+.......|..+.+|+.+.+.. .+.......|.+|.+|+.+.+..+ +...-..++.++++|
T Consensus 283 aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred ccccccccccccCCC-cccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 344556666666642 22333344566667777777665 333334456666777777777543 233223456677777
Q ss_pred cEEeeecCC
Q 040556 100 KILNLSSCS 108 (128)
Q Consensus 100 ~~l~l~~n~ 108 (128)
+.+++.++.
T Consensus 360 ~~i~~~~~~ 368 (394)
T 4gt6_A 360 NNIEYSGSR 368 (394)
T ss_dssp CEEEESSCH
T ss_pred CEEEECCce
Confidence 777776543
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.00 E-value=3.5e-05 Score=51.10 Aligned_cols=102 Identities=13% Similarity=0.013 Sum_probs=68.1
Q ss_pred hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCC
Q 040556 20 SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSL 99 (128)
Q Consensus 20 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 99 (128)
.+..+.+|+.+.+..+ +.......|..+.+|+.+++.. .+.......|.+|.+|+.+.+..+ +...-..++.++.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3456777777777654 3444455677888888888865 344444567778888888888664 333334567788888
Q ss_pred cEEeeecCCCCCCCCcCcCCCCCCCcc
Q 040556 100 KILNLSSCSKLENVPENLGKVESLEEL 126 (128)
Q Consensus 100 ~~l~l~~n~~~~~~~~~~~~~~~L~~l 126 (128)
+.+++..+- ..+..++.++++|+.+
T Consensus 369 ~~i~lp~~~--~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 369 KKVELPKRL--EQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEEEEEGGG--GGGGGGBCTTCEEEEE
T ss_pred CEEEECCCC--EEhhheecCCCCCcEE
Confidence 888887542 2334567778877654
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.93 E-value=5.9e-05 Score=49.99 Aligned_cols=81 Identities=16% Similarity=0.078 Sum_probs=57.4
Q ss_pred hhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCCCC
Q 040556 44 FISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVESL 123 (128)
Q Consensus 44 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 123 (128)
.+..+.+|+.+.+.. .+.......|..|.+|+.+++..+ +...-..++.++++|+.+.+..+ +...-..+|..|++|
T Consensus 292 ~F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred ccccccccccccccc-ccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 456677888888765 344444567888999999998653 33333457888999999999765 444445678889999
Q ss_pred Cccc
Q 040556 124 EELD 127 (128)
Q Consensus 124 ~~l~ 127 (128)
+.++
T Consensus 369 ~~i~ 372 (394)
T 4fs7_A 369 KKVE 372 (394)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 8765
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.92 E-value=0.0001 Score=48.87 Aligned_cols=104 Identities=9% Similarity=0.082 Sum_probs=76.7
Q ss_pred hhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccCcchHHhhcCCCC
Q 040556 20 SIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLSSLPSTINGLKSL 99 (128)
Q Consensus 20 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 99 (128)
.|..+..|+.+.+..+. .......|..+..|+.+.+.. .+.......|..|.+|+.+.+..+ +...-..++.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 56678889999887654 444556688899999999875 455555677889999999999764 333334578899999
Q ss_pred cEEeeecCCCCCCCCcCcCCCCCCCccc
Q 040556 100 KILNLSSCSKLENVPENLGKVESLEELD 127 (128)
Q Consensus 100 ~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 127 (128)
+.+.+..+ +...-..+|.+|++|+.++
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence 99999754 3443355788999998764
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.89 E-value=9.3e-05 Score=44.70 Aligned_cols=80 Identities=16% Similarity=0.115 Sum_probs=37.0
Q ss_pred CCcEEEecCC-CCCC-----cchhhhccCcccEEeccCCCCcccc----hhhhcccccCCEEecCCCCCcccc----hhh
Q 040556 3 FLQELLLDGT-DIKG-----LPLSIVLLSGIVQLDLKGCKNISCL----SNFISALKFLSTLNLSDGTAIREL----SLS 68 (128)
Q Consensus 3 ~L~~l~l~~~-~~~~-----~~~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~----~~~ 68 (128)
.|++|+++++ .+.. +...+..-..|+.|++++|.+.... ...+..-.+|+.|+++.|.+.... ...
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 3555566553 4441 2223333445666666666554322 222233445666666665554321 122
Q ss_pred hhhcCCCcEEeecC
Q 040556 69 VELLTGLVVLNLKD 82 (128)
Q Consensus 69 ~~~l~~L~~l~l~~ 82 (128)
+..-..|+.|++.+
T Consensus 122 L~~N~tL~~L~L~n 135 (197)
T 1pgv_A 122 TLVTQSIVEFKADN 135 (197)
T ss_dssp TTTTCCCSEEECCC
T ss_pred HhhCCceeEEECCC
Confidence 22334466666653
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.84 E-value=0.00012 Score=48.08 Aligned_cols=116 Identities=9% Similarity=-0.001 Sum_probs=75.4
Q ss_pred CCCcEEEecCCCCCCcc-hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEee
Q 040556 2 KFLQELLLDGTDIKGLP-LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNL 80 (128)
Q Consensus 2 ~~L~~l~l~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 80 (128)
..|+.+.+..+ ++.+. ..+..+.+++.+.+..+ +.......|..+.+|+.+.+..+.+.......|.+|.+|+.+.+
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 34555555543 44443 35667888888888754 34444556888899999999877666666677888999999998
Q ss_pred cCCcccCcchHHhhcCCCCcEEeeecCCCCCCCCcCcCCCC
Q 040556 81 KDWQYLSSLPSTINGLKSLKILNLSSCSKLENVPENLGKVE 121 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 121 (128)
..+ +...-..++.++++|+.+.+..+ +...-..+|..++
T Consensus 318 p~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 318 PTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred Ccc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 754 33323456778888888887643 2222233455443
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.55 E-value=0.00028 Score=39.76 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=34.7
Q ss_pred EEEecCCCCC--CcchhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCCCC
Q 040556 6 ELLLDGTDIK--GLPLSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDGTA 61 (128)
Q Consensus 6 ~l~l~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 61 (128)
+++.+++.++ .+|..+ -++++.|++++|.+....+..|..+++|+.|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4556666666 666432 23577777777776666566666777777777777654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.54 E-value=0.00043 Score=41.80 Aligned_cols=85 Identities=13% Similarity=0.075 Sum_probs=62.5
Q ss_pred ccCcccEEeccCC-CCccc----chhhhcccccCCEEecCCCCCccc----chhhhhhcCCCcEEeecCCcccCc----c
Q 040556 23 LLSGIVQLDLKGC-KNISC----LSNFISALKFLSTLNLSDGTAIRE----LSLSVELLTGLVVLNLKDWQYLSS----L 89 (128)
Q Consensus 23 ~l~~L~~l~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~----~ 89 (128)
.-+.|+.|+++++ .+... +...+..-++|+.|++++|.+... +...+..-..|++|+++.|.+... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4578999999986 65543 344556667899999999998753 334455668899999999987653 3
Q ss_pred hHHhhcCCCCcEEeeecC
Q 040556 90 PSTINGLKSLKILNLSSC 107 (128)
Q Consensus 90 ~~~~~~~~~L~~l~l~~n 107 (128)
.+++..-+.|++|++++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 445556678999999854
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.94 E-value=0.0028 Score=35.62 Aligned_cols=58 Identities=12% Similarity=-0.019 Sum_probs=43.3
Q ss_pred cEEeccCCCCc-ccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCCcccC
Q 040556 28 VQLDLKGCKNI-SCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDWQYLS 87 (128)
Q Consensus 28 ~~l~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 87 (128)
..++-+++.+. ...|..+ ..+++.|++++|.+....+..+..+++|+.+++.+|.+.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36677777643 2555422 2469999999999887667778889999999999998764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=84.86 E-value=1.2 Score=23.59 Aligned_cols=46 Identities=13% Similarity=0.042 Sum_probs=29.1
Q ss_pred CCCCcc-hhhhccCcccEEeccCCCCcccchhhhcccccCCEEecCCC
Q 040556 13 DIKGLP-LSIVLLSGIVQLDLKGCKNISCLSNFISALKFLSTLNLSDG 59 (128)
Q Consensus 13 ~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 59 (128)
.++.+. ..|.+|.+|+.+.+..+ +.......|..+.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344443 35667777877777755 24455556777777777776653
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=81.71 E-value=4.2 Score=21.44 Aligned_cols=47 Identities=9% Similarity=-0.072 Sum_probs=33.8
Q ss_pred CCcccchhhhcccccCCEEecCCCCCcccchhhhhhcCCCcEEeecCC
Q 040556 36 KNISCLSNFISALKFLSTLNLSDGTAIRELSLSVELLTGLVVLNLKDW 83 (128)
Q Consensus 36 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 83 (128)
.+.......|..+.+|+.+.+.. .+...-...|..|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 33444456688888888888877 455555677888888888888654
Done!