BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040558
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 131/362 (36%), Positives = 189/362 (52%), Gaps = 20/362 (5%)
Query: 8 IIVCVDDDPTVPRKIKKLVAEDADAKGLILIDEDYEKHVPFDSGIFPLSEV--GSVAGFQ 65
I++C DD+ +++ + A K I I ED F S FP V G Q
Sbjct: 286 IVIC-DDNGDFSDQMR--IITRARLKAAIFISEDPGV---FRSATFPNPGVVVNKKEGKQ 339
Query: 66 IIHYINSTKNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAA 125
+I+Y+ ++ PTATI KPAPVVA S+RGP I KPD+ APGV ILAA
Sbjct: 340 VINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAA 399
Query: 126 IVPKVNAGSFPIGKK---PAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMT 182
P V A S IG Y ++SGTSMA PH G AA +++ H WS S I+SA+MT
Sbjct: 400 YPPNVFATS--IGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMT 457
Query: 183 TATVYDNTGKPLKN-NAGSTASPHETGVGEISPLKALNPGLVFETTTKDYLRFLCYFGYS 241
TA DNT KP+K+ + A+P + G G + P +AL+PGLV++ T +DY+ LC ++
Sbjct: 458 TADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFT 517
Query: 242 EKNIRSMSKYT-NFNCPRNSIDXXXXXXXXXXXXXXKLDRHRAAETVKRTVTNVGLQNVT 300
E+ +++++ + + NC S D + KRTVTNVG T
Sbjct: 518 EEQFKTIARSSASHNCSNPSADLNYPSFIALYSIEGNFTLLE--QKFKRTVTNVGKGAAT 575
Query: 301 YISRVNAPSGLIVKVLPQKLVFAEGVKRMSFSVSF-YGKEAAGGYNFGSVTW--SDNRHS 357
Y +++ AP + V PQ LVF ++ S++++ Y + N GS+TW + HS
Sbjct: 576 YKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHS 635
Query: 358 VQ 359
V+
Sbjct: 636 VR 637
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 157 bits (398), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 120/367 (32%), Positives = 183/367 (49%), Gaps = 39/367 (10%)
Query: 1 PKKVAGKIIVCVDDDPTVPRKIKKLVAEDADAKGLILID--EDYEKHVPFDSGIFPLSEV 58
P + GKI+VC + P + K + A G+++ DY P S + +++
Sbjct: 277 PNLLKGKIVVC--EASFGPHEFFKSLD---GAAGVLMTSNTRDYADSYPLPSSVLDPNDL 331
Query: 59 GSVAGFQIIHYINSTKNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAP 118
+ YI S ++P ATI + + APVV FSSRGP T++++KPD++ P
Sbjct: 332 -----LATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGP 385
Query: 119 GVAILAAIVPKVNAGSFPIG--KKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSII 176
GV ILAA P V P+G ++ + I SGTSM+CPH+TG A ++++ + WS + I
Sbjct: 386 GVEILAAW-PSVA----PVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAI 440
Query: 177 KSALMTTATVYDNTGKPLKNNAGSTASPHETGVGEISPLKALNPGLVFETTTKDYLRFLC 236
KSALMTTA+ + P A G G ++PLKA+ PGLV++ DY++FLC
Sbjct: 441 KSALMTTASPMNARFNPQAEFA--------YGSGHVNPLKAVRPGLVYDANESDYVKFLC 492
Query: 237 YFGYSEKNIRSM----SKYTNFNCPRNSIDXXXXXXXXXXXXXXKLDRHRAAETVKRTVT 292
GY+ + +R + S T+ N R D +++ RT+T
Sbjct: 493 GQGYNTQAVRRITGDYSACTSGNTGR-VWDLNYPSFGLSVSPSQTFNQY-----FNRTLT 546
Query: 293 NVGLQNVTYISRVNAPSGLIVKVLPQKLVFAEGVKRMSFSVSFYGKEAAGGYNFGSVTWS 352
+V Q TY + ++AP GL + V P L F R SF+++ G G S+ WS
Sbjct: 547 SVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG-SIKGFVVSASLVWS 605
Query: 353 DNRHSVQ 359
D H V+
Sbjct: 606 DGVHYVR 612
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 94 VVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMA 153
V+ FSSRGP +N LKP+V APG I+AA + G PI Y GT+MA
Sbjct: 308 VITDFSSRGP--TADNRLKPEVVAPGNWIIAARASGTSMGQ-PINDY---YTAAPGTAMA 361
Query: 154 CPHVTGAAAFIRSVHRRWSSSIIKSALMTTATV 186
PHV G AA + H W+ +K+AL+ TA +
Sbjct: 362 TPHVAGIAALLLQAHPSWTPDKVKTALIETADI 394
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 62/126 (49%), Gaps = 29/126 (23%)
Query: 74 KNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAG 133
K P+ + VD + A FSS GP EL DV APGV+I +
Sbjct: 161 KYPSVIAVGAVDSSNQR-----ASFSSVGP-EL-------DVMAPGVSICS--------- 198
Query: 134 SFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT--- 190
+ P K Y KSGTSMA PHV GAAA I S H W+++ ++S+L T T N+
Sbjct: 199 TLPGNK----YGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNSFYY 254
Query: 191 GKPLKN 196
GK L N
Sbjct: 255 GKGLIN 260
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 63/126 (50%), Gaps = 29/126 (23%)
Query: 74 KNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAG 133
K P+ + VD + A FSS GP EL DV APGV+I +
Sbjct: 161 KYPSVIAVGAVDSSNQR-----APFSSVGP-EL-------DVMAPGVSICS--------- 198
Query: 134 SFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT--- 190
+ P GK Y SGTSMA PHV GAAA I S H W+++ ++S+L TAT ++
Sbjct: 199 TLPGGK----YGALSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKLGDSFYY 254
Query: 191 GKPLKN 196
GK L N
Sbjct: 255 GKGLIN 260
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 62/126 (49%), Gaps = 29/126 (23%)
Query: 74 KNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAG 133
K P+ + VD + A FSS GP EL DV APGV+I +
Sbjct: 161 KYPSVIAVGAVDSSNQR-----ASFSSVGP-EL-------DVMAPGVSICS--------- 198
Query: 134 SFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT--- 190
+ P K Y KSGTSMA PHV GAAA I S H W+++ ++S+L T T ++
Sbjct: 199 TLPGNK----YGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYY 254
Query: 191 GKPLKN 196
GK L N
Sbjct: 255 GKGLIN 260
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 62/126 (49%), Gaps = 29/126 (23%)
Query: 74 KNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAG 133
K P+ + VD + A FSS GP EL DV APGV+I +
Sbjct: 170 KYPSVIAVGAVDSSNQR-----ASFSSVGP-EL-------DVMAPGVSICS--------- 207
Query: 134 SFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT--- 190
+ P K Y KSGTSMA PHV GAAA I S H W+++ ++S+L T T ++
Sbjct: 208 TLPGNK----YGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYY 263
Query: 191 GKPLKN 196
GK L N
Sbjct: 264 GKGLIN 269
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 62/126 (49%), Gaps = 29/126 (23%)
Query: 74 KNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAG 133
K P+ + VD + A FSS GP EL DV APGV+I +
Sbjct: 170 KYPSVIAVGAVDSSNQR-----ASFSSVGP-EL-------DVMAPGVSICS--------- 207
Query: 134 SFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT--- 190
+ P K Y KSGTSMA PHV GAAA I S H W+++ ++S+L T T ++
Sbjct: 208 TLPGNK----YGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYY 263
Query: 191 GKPLKN 196
GK L N
Sbjct: 264 GKGLIN 269
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 62/126 (49%), Gaps = 29/126 (23%)
Query: 74 KNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAG 133
K P+ + VD + A FSS GP EL DV APGV+I +
Sbjct: 170 KYPSVIAVGAVDSSNQR-----ASFSSVGP-EL-------DVMAPGVSIQS--------- 207
Query: 134 SFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT--- 190
+ P K Y KSGTSMA PHV GAAA I S H W+++ ++S+L T T ++
Sbjct: 208 TLPGNK----YGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYY 263
Query: 191 GKPLKN 196
GK L N
Sbjct: 264 GKGLIN 269
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 63/126 (50%), Gaps = 29/126 (23%)
Query: 74 KNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAG 133
K P+ + VD + A FSS GP EL DV APGV+I +
Sbjct: 161 KYPSVIAVGAVDSSNQR-----APFSSVGP-EL-------DVMAPGVSICS--------- 198
Query: 134 SFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT--- 190
+ P GK Y SGT+MA PHV GAAA I S H W+++ ++S+L TAT ++
Sbjct: 199 TLPGGK----YGALSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKLGDSFYY 254
Query: 191 GKPLKN 196
GK L N
Sbjct: 255 GKGLIN 260
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 21/90 (23%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155
A FSS GP EL DV APGV+I++ + P K Y KSGT+MA P
Sbjct: 178 ASFSSVGP-EL-------DVMAPGVSIVS---------TLPGNK----YGAKSGTAMASP 216
Query: 156 HVTGAAAFIRSVHRRWSSSIIKSALMTTAT 185
HV GAAA I S H W+++ ++S+L T T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTT 246
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 56/104 (53%), Gaps = 24/104 (23%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155
A FSS GP EL DV APGV+I++ + P K Y KSGT+MA P
Sbjct: 178 ASFSSVGP-EL-------DVMAPGVSIVS---------TLPGNK----YGAKSGTAMASP 216
Query: 156 HVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT---GKPLKN 196
HV GAAA I S H W+++ ++S+L T T ++ GK L N
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 260
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 29/126 (23%)
Query: 74 KNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAG 133
K P+ + VD + A FSS GP EL DV APGV+I +
Sbjct: 161 KYPSVIAVGAVDSSNQR-----ASFSSVGP-EL-------DVMAPGVSICS--------- 198
Query: 134 SFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT--- 190
+ P K Y KSGT MA PHV GAAA I S H W+++ ++S+L T T ++
Sbjct: 199 TLPGNK----YGAKSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYY 254
Query: 191 GKPLKN 196
GK L N
Sbjct: 255 GKGLIN 260
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 29/126 (23%)
Query: 74 KNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAG 133
K P+ + VD + A FSS GP EL DV APGV+I +
Sbjct: 158 KYPSVIAVGAVDSSNQR-----ASFSSVGP-EL-------DVMAPGVSIWS--------- 195
Query: 134 SFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT--- 190
+ P K Y KSGT MA PHV GAAA I S H W+++ ++S+L T T ++
Sbjct: 196 TLPGNK----YGAKSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYY 251
Query: 191 GKPLKN 196
GK L N
Sbjct: 252 GKGLIN 257
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 54/104 (51%), Gaps = 24/104 (23%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155
A FSS GP EL DV APGV+I + + P K Y KSGT MA P
Sbjct: 187 ASFSSVGP-EL-------DVMAPGVSIQS---------TLPGNK----YGAKSGTXMASP 225
Query: 156 HVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT---GKPLKN 196
HV GAAA I S H W+++ ++S+L T T ++ GK L N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 29/126 (23%)
Query: 74 KNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAG 133
K P+ + VD + A FSS GP EL DV APGV+I +
Sbjct: 170 KYPSVIAVGAVDSSNQR-----ASFSSVGP-EL-------DVMAPGVSIXS--------- 207
Query: 134 SFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT--- 190
+ P K Y SGTSMA PHV GAAA I S H W+++ ++S+L T T ++
Sbjct: 208 TLPGNK----YGAYSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTYLGDSFYY 263
Query: 191 GKPLKN 196
GK L N
Sbjct: 264 GKGLIN 269
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 54/104 (51%), Gaps = 24/104 (23%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155
A FSS GP EL DV APGV+I + + P K Y SGTSMA P
Sbjct: 187 ASFSSVGP-EL-------DVMAPGVSIXS---------TLPGNK----YGAYSGTSMASP 225
Query: 156 HVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT---GKPLKN 196
HV GAAA I S H W+++ ++S+L T T ++ GK L N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 54/104 (51%), Gaps = 24/104 (23%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155
A FSS GP EL DV APGV+I + + P K Y +GTSMA P
Sbjct: 187 ASFSSVGP-EL-------DVMAPGVSIQS---------TLPGNK----YGAYNGTSMASP 225
Query: 156 HVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT---GKPLKN 196
HV GAAA I S H W+++ ++S+L T T ++ GK L N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDSFYYGKGLIN 269
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 48/90 (53%), Gaps = 21/90 (23%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155
A FSS GP EL DV APGV+I + + P K Y +GTSMA P
Sbjct: 187 ASFSSVGP-EL-------DVMAPGVSIQS---------TLPGNK----YGAYNGTSMASP 225
Query: 156 HVTGAAAFIRSVHRRWSSSIIKSALMTTAT 185
HV GAAA I S H W+++ ++S+L T T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTT 255
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 48/90 (53%), Gaps = 21/90 (23%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155
A FSS GP EL DV APGV+I + + P K Y +GTSMA P
Sbjct: 187 ASFSSVGP-EL-------DVMAPGVSIQS---------TLPGNK----YGAYNGTSMASP 225
Query: 156 HVTGAAAFIRSVHRRWSSSIIKSALMTTAT 185
HV GAAA I S H W+++ ++S+L T T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 48/90 (53%), Gaps = 21/90 (23%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155
A FSS GP EL DV APGV+I + + P K Y +GTSMA P
Sbjct: 187 ASFSSVGP-EL-------DVMAPGVSIQS---------TLPGNK----YGAYNGTSMASP 225
Query: 156 HVTGAAAFIRSVHRRWSSSIIKSALMTTAT 185
HV GAAA I S H W+++ ++S+L T T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 48/90 (53%), Gaps = 21/90 (23%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155
A FSS GP EL DV APGV+I + + P K Y +GTSMA P
Sbjct: 187 ASFSSVGP-EL-------DVMAPGVSIQS---------TLPGNK----YGAYNGTSMASP 225
Query: 156 HVTGAAAFIRSVHRRWSSSIIKSALMTTAT 185
HV GAAA I S H W+++ ++S+L T T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 53/104 (50%), Gaps = 24/104 (23%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155
A FSS GP EL DV APGV+I + + P K Y SGT MA P
Sbjct: 187 ASFSSVGP-EL-------DVMAPGVSIQS---------TLPGNK----YGAYSGTXMASP 225
Query: 156 HVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT---GKPLKN 196
HV GAAA I S H W+++ ++S+L T T ++ GK L N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 60/126 (47%), Gaps = 29/126 (23%)
Query: 74 KNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAG 133
K P+ + VD + A FSS GP EL DV APGV+I +
Sbjct: 170 KYPSVIAVGAVDSSNQR-----ASFSSVGP-EL-------DVMAPGVSIQS--------- 207
Query: 134 SFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT--- 190
+ P K Y SGT MA PHV GAAA I S H W+++ ++S+L T T ++
Sbjct: 208 TLPGNK----YGAYSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYY 263
Query: 191 GKPLKN 196
GK L N
Sbjct: 264 GKGLIN 269
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 47/90 (52%), Gaps = 21/90 (23%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155
A FSS GP EL DV APGV+I + + P K Y +GT MA P
Sbjct: 187 ASFSSVGP-EL-------DVMAPGVSIQS---------TLPGNK----YGAYNGTXMASP 225
Query: 156 HVTGAAAFIRSVHRRWSSSIIKSALMTTAT 185
HV GAAA I S H W+++ ++S+L T T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 47/90 (52%), Gaps = 21/90 (23%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155
A FSS GP EL DV APGV+I + + P K Y +GT MA P
Sbjct: 187 ASFSSVGP-EL-------DVMAPGVSIQS---------TLPGNK----YGAYNGTXMASP 225
Query: 156 HVTGAAAFIRSVHRRWSSSIIKSALMTTAT 185
HV GAAA I S H W+++ ++S+L T T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 47/90 (52%), Gaps = 21/90 (23%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155
A FSS GP EL DV APGV+I + + P K Y +GTS A P
Sbjct: 187 ASFSSVGP-EL-------DVMAPGVSIQS---------TLPGNK----YGAYNGTSXASP 225
Query: 156 HVTGAAAFIRSVHRRWSSSIIKSALMTTAT 185
HV GAAA I S H W+++ ++S+L T T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 57/118 (48%), Gaps = 26/118 (22%)
Query: 83 TVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPA 142
T+ V A A FSS G EL DV APGV+I + + P
Sbjct: 174 TIAVGAVNSANQRASFSSAGS-EL-------DVMAPGVSIQSTL--------------PG 211
Query: 143 G-YAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT---GKPLKN 196
G Y +GTSMA PHV GAAA I S H W+++ ++ L +TAT ++ GK L N
Sbjct: 212 GTYGAYNGTSMATPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGSSFYYGKGLIN 269
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 26/105 (24%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAG-YAIKSGTSMAC 154
A FSS G EL DV APGV+I + + P G Y +GT MA
Sbjct: 187 ASFSSAGS-EL-------DVMAPGVSIQSTL--------------PGGTYGAYNGTCMAT 224
Query: 155 PHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT---GKPLKN 196
PHV GAAA I S H W+++ ++ L +TAT N+ GK L N
Sbjct: 225 PHVAGAAALILSKHPTWTNAQVRDRLESTATYLGNSFYYGKGLIN 269
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 18/87 (20%)
Query: 114 DVTAPGVAILAAIVPKVNAGSFPIGKKPAG-YAIKSGTSMACPHVTGAAAFIRSVHRRWS 172
DV APGV+I + + P G Y +GT MA PHV GAAA I S H W+
Sbjct: 197 DVMAPGVSIQSTL--------------PGGTYGAYNGTXMATPHVAGAAALILSKHPTWT 242
Query: 173 SSIIKSALMTTATVYDNT---GKPLKN 196
++ ++ L +TAT N+ GK L N
Sbjct: 243 NAQVRDRLESTATYLGNSFYYGKGLIN 269
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 95 VAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMAC 154
VA FSSRGP + + +KPDV APG IL+A SF + YA GTSMA
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMAT 258
Query: 155 PHVTGAAAFIRS--VHRRWSS---SIIKSALMTTATVYDNTGKPLKNNAGSTASPHETGV 209
P V G A +R V R + S++K+AL+ A G P N G
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADI-GLGYPNGNQ----------GW 307
Query: 210 GEISPLKALNPGLVFETTT 228
G ++ K+LN V E+++
Sbjct: 308 GRVTLDKSLNVAYVNESSS 326
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 144 YAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT---GKPLKN 196
YA +GTSMA PHV GAAA I S H S+S +++ L +TAT ++ GK L N
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSFYYGKGLIN 268
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 144 YAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT---GKPLKN 196
YA +GTSMA PHV GAAA I S H S+S +++ L +TAT ++ GK L N
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSFYYGKGLIN 268
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 144 YAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT---GKPLKN 196
YA +GTSMA PHV GAAA I S H S+S +++ L +TAT ++ GK L N
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSFYYGKGLIN 268
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 20/146 (13%)
Query: 62 AGFQIIHYIN---STKNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAP 118
AG +H N + +P+AT+ V+ + VVA + G G ++ + A
Sbjct: 112 AGNNGMHVANLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAV 171
Query: 119 GV--------------AILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFI 164
G A L + P VN S G YA +GTSMA PHV G AA +
Sbjct: 172 GATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST---YASLNGTSMATPHVAGVAALV 228
Query: 165 RSVHRRWSSSIIKSALMTTATVYDNT 190
+ + WS+ I++ L TAT NT
Sbjct: 229 KQKNPSWSNVQIRNHLKNTATGLGNT 254
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 144 YAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT---GKPLKN 196
YA +GTSMA PHV GAAA I S H S+S +++ L +TAT ++ GK L N
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSFYYGKGLIN 269
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 144 YAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT---GKPLKN 196
YA +GTSMA PHV GAAA I S H S+S +++ L +TAT ++ GK L N
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSFYYGKGLIN 269
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 144 YAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT---GKPLKN 196
YA +GTSMA PHV GAAA I S H S+S +++ L +TAT ++ GK L N
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSFYYGKGLIN 268
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 20/146 (13%)
Query: 62 AGFQIIHYIN---STKNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAP 118
AG +H N + +P+AT+ V+ + VVA + G G ++ + A
Sbjct: 112 AGNNGMHVANLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAV 171
Query: 119 GV--------------AILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFI 164
G A L + P VN S G YA +GTSMA PHV GAAA +
Sbjct: 172 GATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST---YASLNGTSMATPHVAGAAALV 228
Query: 165 RSVHRRWSSSIIKSALMTTATVYDNT 190
+ + WS+ I++ L TAT +T
Sbjct: 229 KQKNPSWSNVQIRNHLKNTATSLGST 254
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 20/146 (13%)
Query: 62 AGFQIIHYIN---STKNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAP 118
AG +H N + +P+AT+ V+ + VVA + G G ++ + A
Sbjct: 112 AGNNGMHVANLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAV 171
Query: 119 GV--------------AILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFI 164
G A L + P VN S G YA +GTSMA PHV GAAA +
Sbjct: 172 GATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST---YASLNGTSMATPHVAGAAALV 228
Query: 165 RSVHRRWSSSIIKSALMTTATVYDNT 190
+ + WS+ I++ L TAT +T
Sbjct: 229 KQKNPSWSNVQIRNHLKNTATSLGST 254
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 20/146 (13%)
Query: 62 AGFQIIHYIN---STKNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAP 118
AG +H N + +P+AT+ V+ + VVA + G G ++ + A
Sbjct: 112 AGNNGMHVANLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAV 171
Query: 119 GV--------------AILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFI 164
G A L + P VN S G YA +GTSMA PHV GAAA +
Sbjct: 172 GATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST---YASLNGTSMATPHVAGAAALV 228
Query: 165 RSVHRRWSSSIIKSALMTTATVYDNT 190
+ + WS+ I++ L TAT +T
Sbjct: 229 KQKNPSWSNVQIRNHLKNTATSLGST 254
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 95 VAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMAC 154
VA FSSRGP + + +KPDV APG IL+A SF + YA GTS A
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYXGGTSXAT 258
Query: 155 PHVTGAAAFIRS--VHRRWSS---SIIKSALMTTATVYDNTGKPLKNNAGSTASPHETGV 209
P V G A +R V R + S++K+AL+ A G P N G
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADI-GLGYPNGNQ----------GW 307
Query: 210 GEISPLKALNPGLVFETTT 228
G ++ K+LN V E+++
Sbjct: 308 GRVTLDKSLNVAYVNESSS 326
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 20/146 (13%)
Query: 62 AGFQIIHYIN---STKNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAP 118
AG +H N + +P+AT+ V+ + VVA + G G ++ + A
Sbjct: 112 AGNNGMHVANLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAV 171
Query: 119 GV--------------AILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFI 164
G A L + P VN S G YA +GT MA PHV GAAA +
Sbjct: 172 GATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST---YASLNGTXMATPHVAGAAALV 228
Query: 165 RSVHRRWSSSIIKSALMTTATVYDNT 190
+ + WS+ I++ L TAT +T
Sbjct: 229 KQKNPSWSNVQIRNHLKNTATSLGST 254
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 144 YAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNT---GKPLKN 196
YA +GT MA PHV GAAA I S H S+S +++ L +TAT ++ GK L N
Sbjct: 213 YATLNGTXMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSFYYGKGLIN 268
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 126 IVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTAT 185
+ P VN S G YA +GTSMA PHV GAAA ++ + WS+ I++ L TAT
Sbjct: 193 VAPGVNVQSTYPGST---YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTAT 249
Query: 186 VYDNT 190
+T
Sbjct: 250 SLGST 254
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 20/146 (13%)
Query: 62 AGFQIIHYIN---STKNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAP 118
AG +H N + +P+AT+ V+ + VVA + G G ++ + A
Sbjct: 112 AGNNGMHVANLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAV 171
Query: 119 GV--------------AILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFI 164
G A L + P VN S G YA +GT MA PHV GAAA +
Sbjct: 172 GATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST---YASLNGTXMATPHVAGAAALV 228
Query: 165 RSVHRRWSSSIIKSALMTTATVYDNT 190
+ + WS+ I++ L TAT +T
Sbjct: 229 KQKNPSWSNVQIRNHLKNTATSLGST 254
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 126 IVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTAT 185
+ P VN S G YA +GTSMA PHV GAAA ++ + WS+ I++ L TAT
Sbjct: 193 VAPGVNVQSTYPGST---YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTAT 249
Query: 186 VYDNT 190
+T
Sbjct: 250 SLGST 254
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 20/146 (13%)
Query: 62 AGFQIIHYIN---STKNPTATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAP 118
AG +H N + +P+AT+ V+ + VVA + G G + + A
Sbjct: 112 AGNNGMHVANLSLGSPSPSATLEQAVNSATSRGVLVVAASGNEGAGSIDYPARYANAMAV 171
Query: 119 GV--------------AILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFI 164
G A L + P VN S G YA +GT MA PHV GAAA +
Sbjct: 172 GATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST---YASLNGTXMATPHVAGAAALV 228
Query: 165 RSVHRRWSSSIIKSALMTTATVYDNT 190
+ + WS+ I++ L TAT +T
Sbjct: 229 KQKNPSWSNVQIRNHLKNTATSLGST 254
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 13/77 (16%)
Query: 114 DVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSS 173
D+ APGV + + ++P + YA +GT MA PHV GAAA ++ + WS+
Sbjct: 191 DIVAPGVNVQS---------TYP----GSTYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 174 SIIKSALMTTATVYDNT 190
I++ L TAT +T
Sbjct: 238 VQIRNHLKNTATSLGST 254
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 114 DVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSS 173
DV APGV I++ I G + YA SGTSMA PHV G AA + S R ++
Sbjct: 202 DVVAPGVDIVSTIT----------GNR---YAYMSGTSMASPHVAGLAALLASQGR--NN 246
Query: 174 SIIKSALMTTATVYDNTGKPLK 195
I+ A+ TA TG K
Sbjct: 247 IEIRQAIEQTADKISGTGTYFK 268
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 95 VAYFSSRGPGELTEN--ILKPDV--TAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGT 150
VA FSSRG + I K DV +APG A+ + GYA SGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFD-------------GGYATISGT 248
Query: 151 SMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYD 188
SMA PH G AA I + S+ ++ L T A+V D
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND 286
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 39/155 (25%)
Query: 73 TKNPTATILPTVDVQRYKPAPVVAYFSSRGPGELT-ENILKPDVTAPGVAILAAIVPKVN 131
T N T +LPT + ++ FSS G LT + +KPD+ APG IL+++
Sbjct: 359 TFNATPKVLPTASDTK------LSRFSSWG---LTADGNIKPDIAAPGQDILSSVANN-- 407
Query: 132 AGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRW--------SSSIIKSALMTT 183
YA SGTSM+ P V G ++ + + K LM++
Sbjct: 408 -----------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSS 456
Query: 184 AT-VYDNTGKPLKNNAGSTASPHETGVGEISPLKA 217
AT +YD K + SP + G G + KA
Sbjct: 457 ATALYDEDEK-------AYFSPRQQGAGAVDAKKA 484
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 21/90 (23%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155
A FSS G EL +V APGV++ + ++P Y +GTSMA P
Sbjct: 186 ASFSSVGS-EL-------EVMAPGVSVYS---------TYPSNT----YTSLNGTSMASP 224
Query: 156 HVTGAAAFIRSVHRRWSSSIIKSALMTTAT 185
HV GAAA I S + S+S +++ L +TAT
Sbjct: 225 HVAGAAALILSKYPTLSASQVRNRLSSTAT 254
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 144 YAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTA 184
Y +GTSMA PHV+G A + S H S+S +++AL TA
Sbjct: 362 YEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATA 402
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 15/78 (19%)
Query: 114 DVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSS 173
DV APG +I + ++P YA SGTSMA PHV G A + S R S+
Sbjct: 201 DVAAPGSSIYS---------TYPTST----YASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 174 SIIKSALMTTATVYDNTG 191
S I++A+ TA TG
Sbjct: 246 SNIRAAIENTADKISGTG 263
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Query: 114 DVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSS 173
DV APG I + ++P YA SGTSMA PHV G A + S R S+
Sbjct: 201 DVAAPGSWIYS---------TYPTST----YASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 174 SIIKSALMTTATVYDNTG 191
S I++A+ TA TG
Sbjct: 246 SNIRAAIENTADKISGTG 263
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 14/81 (17%)
Query: 114 DVTAPGVAILAAIVPKVNAGSFPIGKKPA--GYAIKSGTSMACPHVTGAAAFI----RSV 167
D+ APG IL+ V++G+ ++P Y+ +GTSMA PHV+G AA + SV
Sbjct: 245 DLAAPGQDILS----TVDSGT----RRPVSDAYSFMAGTSMATPHVSGVAALVISAANSV 296
Query: 168 HRRWSSSIIKSALMTTATVYD 188
++ + + +K L++T + ++
Sbjct: 297 NKNLTPAELKDVLVSTTSPFN 317
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 14/81 (17%)
Query: 114 DVTAPGVAILAAIVPKVNAGSFPIGKKPA--GYAIKSGTSMACPHVTGAAAFI----RSV 167
D+ APG IL+ V++G+ ++P Y+ +GTSMA PHV+G AA + SV
Sbjct: 245 DLAAPGQDILS----TVDSGT----RRPVSDAYSFMAGTSMATPHVSGVAALVISAANSV 296
Query: 168 HRRWSSSIIKSALMTTATVYD 188
++ + + +K L++T + ++
Sbjct: 297 NKNLTPAELKDVLVSTTSPFN 317
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 14/81 (17%)
Query: 114 DVTAPGVAILAAIVPKVNAGSFPIGKKPA--GYAIKSGTSMACPHVTGAAAFI----RSV 167
D+ APG IL+ V++G+ ++P Y+ +GTSMA PHV+G AA + SV
Sbjct: 245 DLAAPGQDILS----TVDSGT----RRPVSDAYSFMAGTSMATPHVSGVAALVISAANSV 296
Query: 168 HRRWSSSIIKSALMTTATVYD 188
++ + + +K L++T + ++
Sbjct: 297 NKNLTPAELKDVLVSTTSPFN 317
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 50/139 (35%), Gaps = 42/139 (30%)
Query: 95 VAYFSSRGPGELTENILKPDVTAPGVAILAAI--------------VPKVNAGSFPIGKK 140
VA FSSR G V APGV IL+ + VP N G+
Sbjct: 328 VAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGT------ 373
Query: 141 PAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNTGKPLKNNAGS 200
Y GTSMA PHVTG A + I+ L TA ++ G
Sbjct: 374 ---YDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW-------- 422
Query: 201 TASPHETGVGEISPLKALN 219
H+TG G + AL
Sbjct: 423 ---DHDTGYGLVKLDAALQ 438
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 18/77 (23%)
Query: 114 DVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFI-----RSVH 168
D+ APGV I + + +GYA SGT+MA PHV GA A I +
Sbjct: 226 DIVAPGVGIKSTYLD-------------SGYAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 169 RRWSSSIIKSALMTTAT 185
R S + I + L+ AT
Sbjct: 273 RSLSETEIYAQLVRRAT 289
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 18/77 (23%)
Query: 114 DVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFI-----RSVH 168
D+ APGV I + + +GYA SGT+MA PHV GA A I +
Sbjct: 226 DIVAPGVGIKSTYLD-------------SGYAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 169 RRWSSSIIKSALMTTAT 185
R S + I + L+ AT
Sbjct: 273 RSLSETEIYAQLVRRAT 289
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 18/77 (23%)
Query: 114 DVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFI-----RSVH 168
D+ APGV I + + +GYA SGT+MA PHV GA A I +
Sbjct: 226 DIVAPGVGIKSTYLD-------------SGYAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 169 RRWSSSIIKSALMTTAT 185
R S + I + L+ AT
Sbjct: 273 RSLSETEIYAQLVRRAT 289
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 18/77 (23%)
Query: 114 DVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFI-----RSVH 168
D+ APGV I + + +GYA SGT+MA PHV GA A I +
Sbjct: 208 DIVAPGVGIKSTYLD-------------SGYAELSGTAMAAPHVAGALALIINLAEDAFK 254
Query: 169 RRWSSSIIKSALMTTAT 185
R S + I + L+ AT
Sbjct: 255 RSLSETEIYAQLVRRAT 271
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 115 VTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSS 174
+ APG IL+ I + G G + Y +K+GTSMA PHV+G AA + S +
Sbjct: 247 LAAPGTNILSTI----DVGQ--AGPVRSSYGMKAGTSMAAPHVSGVAALVISAANSIGKT 300
Query: 175 IIKSAL 180
+ S L
Sbjct: 301 LTPSEL 306
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 115 VTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSS 174
+ APG IL+ I + G G + Y +K+GTSMA PHV+G AA + S +
Sbjct: 247 LAAPGTNILSTI----DVGQ--AGPVRSSYGMKAGTSMAAPHVSGVAALVISAANSIGKT 300
Query: 175 IIKSAL 180
+ S L
Sbjct: 301 LTPSEL 306
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 23/76 (30%)
Query: 95 VAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMAC 154
+A FS+R +P+V+APGV IL+ ++P Y GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILS---------TYP----DDSYETLMGTAMAT 327
Query: 155 PHVTGAAAFIRSVHRR 170
PHV+G A I++ + +
Sbjct: 328 PHVSGVVALIQAAYYQ 343
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 23/76 (30%)
Query: 95 VAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMAC 154
+A FS+R +P+V+APGV IL+ ++P Y GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILS---------TYP----DDSYETLMGTAMAT 327
Query: 155 PHVTGAAAFIRSVHRR 170
PHV+G A I++ + +
Sbjct: 328 PHVSGVVALIQAAYYQ 343
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 23/76 (30%)
Query: 95 VAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMAC 154
+A FS+R +P+V+APGV IL+ ++P Y GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILS---------TYP----DDSYETLMGTAMAT 327
Query: 155 PHVTGAAAFIRSVHRR 170
PHV+G A I++ + +
Sbjct: 328 PHVSGVVALIQAAYYQ 343
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 23/76 (30%)
Query: 95 VAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMAC 154
+A FS+R +P+V+APGV IL+ ++P Y GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILS---------TYP----DDSYETLMGTAMAT 327
Query: 155 PHVTGAAAFIRSVHRR 170
PHV+G A I++ + +
Sbjct: 328 PHVSGVVALIQAAYYQ 343
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 23/76 (30%)
Query: 95 VAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMAC 154
+A FS+R +P+V+APGV IL+ ++P Y GT+MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILS---------TYPDDS----YETLMGTAMAT 247
Query: 155 PHVTGAAAFIRSVHRR 170
PHV+G A I++ + +
Sbjct: 248 PHVSGVVALIQAAYYQ 263
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 23/76 (30%)
Query: 95 VAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMAC 154
+A FS+R +P+V+APGV IL+ ++P Y GT+MA
Sbjct: 213 IASFSNR----------QPEVSAPGVDILS---------TYPDDS----YETLMGTAMAT 249
Query: 155 PHVTGAAAFIRSVHRR 170
PHV+G A I++ + +
Sbjct: 250 PHVSGVVALIQAAYYQ 265
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 23/76 (30%)
Query: 95 VAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMAC 154
+A FS+R +P+V+APGV IL+ ++P Y GT+MA
Sbjct: 288 IASFSNR----------QPEVSAPGVDILS---------TYP----DDSYETLMGTAMAT 324
Query: 155 PHVTGAAAFIRSVHRR 170
PHV+G A I++ + +
Sbjct: 325 PHVSGVVALIQAAYYQ 340
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 23/76 (30%)
Query: 95 VAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMAC 154
+A FS+R +P+V+APGV IL+ ++P Y GT+MA
Sbjct: 222 IASFSNR----------QPEVSAPGVDILS---------TYPDDS----YETLMGTAMAT 258
Query: 155 PHVTGAAAFIRSVHRR 170
PHV+G A I++ + +
Sbjct: 259 PHVSGVVALIQAAYYQ 274
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 23/76 (30%)
Query: 95 VAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMAC 154
+A FS+R +P+V+APGV IL+ ++P Y GT+MA
Sbjct: 222 IASFSNR----------QPEVSAPGVDILS---------TYPDDS----YETLMGTAMAT 258
Query: 155 PHVTGAAAFIRSVHRR 170
PHV+G A I++ + +
Sbjct: 259 PHVSGVVALIQAAYYQ 274
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 23/76 (30%)
Query: 95 VAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMAC 154
+A FS+R +P+V+APGV IL+ ++P Y GT MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILS---------TYPDDS----YETLMGTXMAT 247
Query: 155 PHVTGAAAFIRSVHRR 170
PHV+G A I++ + +
Sbjct: 248 PHVSGVVALIQAAYYQ 263
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 39/155 (25%)
Query: 73 TKNPTATILPTVDVQRYKPAPVVAYFSSRGPGELT-ENILKPDVTAPGVAILAAIVPKVN 131
T N T +LPT + ++ FSS G LT + +KPD+ APG IL+++
Sbjct: 350 TFNATPKVLPTASGTK------LSRFSSWG---LTADGNIKPDIAAPGQDILSSVANN-- 398
Query: 132 AGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRW--------SSSIIKSALMTT 183
YA SGTS + P V G ++ + + K L ++
Sbjct: 399 -----------KYAKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPSERLDLAKKVLXSS 447
Query: 184 AT-VYDNTGKPLKNNAGSTASPHETGVGEISPLKA 217
AT +YD K + SP + G G + KA
Sbjct: 448 ATALYDEDEK-------AYFSPRQQGAGAVDAKKA 475
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 23/76 (30%)
Query: 95 VAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMAC 154
+A FS+R +P+V+APGV IL+ ++P Y GT MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILS---------TYPDDS----YETLMGTCMAT 247
Query: 155 PHVTGAAAFIRSVHRR 170
PHV+G A I++ + +
Sbjct: 248 PHVSGVVALIQAAYYQ 263
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 21/97 (21%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155
+FS+ G E IL APG IL G+ P ++P +GTSMA P
Sbjct: 254 CHFSNWGGNNTKEGIL-----APGEEIL---------GAQPCTEEPVRL---TGTSMAAP 296
Query: 156 HVTGAAAFIRSVHRRWSSSI----IKSALMTTATVYD 188
+TG +A + S+ + + +++AL+ TA D
Sbjct: 297 VMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCD 333
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 21/97 (21%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155
+FS+ G E IL APG IL G+ P ++P +GTSMA P
Sbjct: 254 CHFSNWGGNNTKEGIL-----APGEEIL---------GAQPCTEEPVRL---TGTSMAAP 296
Query: 156 HVTGAAAFIRSVHRRWSSSI----IKSALMTTATVYD 188
+TG +A + S+ + + +++AL+ TA D
Sbjct: 297 VMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCD 333
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 95 VAYFSSRG----PGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGT 150
VA +SSRG G+ +++APG ++ + GY SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYN-------------GGYNTISGT 249
Query: 151 SMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYD 188
SMA PHV+G AA I + + S++ ++S L A D
Sbjct: 250 SMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 21/97 (21%)
Query: 96 AYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155
+FS+ G E IL APG IL G+ P ++P +GTSMA P
Sbjct: 236 CHFSNWGGNNTKEGIL-----APGEEIL---------GAQPCTEEPVRL---TGTSMAAP 278
Query: 156 HVTGAAAFIRSVHRRWSSSI----IKSALMTTATVYD 188
+TG +A + S+ + + +++AL+ TA D
Sbjct: 279 VMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCD 315
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 137 IGKKPAGYAIK-SGTSMACPHVTGAAAFIRSVH----RRWSSSIIKSALMTTAT 185
+G KP G I+ SGTS A P V+G AA + S+ + +K+AL+ +AT
Sbjct: 209 LGAKPNGGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASAT 262
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 17/98 (17%)
Query: 95 VAYFSSRG----PGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGT 150
VA +SSRG G+ +++APG ++ + GY SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYN-------------GGYNTISGT 249
Query: 151 SMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYD 188
MA PHV+G AA I + + S++ ++S L A D
Sbjct: 250 XMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 115 VTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAF----IRSVHRR 170
V APG AI A VP+ F K + +GTS A PHV GA A ++ +
Sbjct: 437 VCAPGGAI--ASVPQ-----FTXSKS----QLXNGTSXAAPHVAGAVALLISGLKQQNIE 485
Query: 171 WSSSIIKSALMTTAT 185
+S IK A+ TAT
Sbjct: 486 YSPYSIKRAISVTAT 500
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 142 AGYAIKSGTSMACPHVTGAAAF 163
GY SGTSMA PHV G AA
Sbjct: 211 GGYKTISGTSMATPHVAGVAAL 232
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 148 SGTSMACPHVTGAAAFIRSVHRRWSSSIIK 177
SGTSMA PHV G AA++ ++ + ++S +
Sbjct: 221 SGTSMATPHVAGLAAYLMTLGKTTAASACR 250
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 148 SGTSMACPHVTGAAAFIRSVHRRWSSSIIK 177
SGTSMA PHV G AA++ ++ + ++S +
Sbjct: 221 SGTSMATPHVAGLAAYLMTLGKTTAASACR 250
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 148 SGTSMACPHVTGAAAFIRSVHRRWSSSIIK 177
SGTSMA PHV G AA++ ++ + ++S +
Sbjct: 221 SGTSMATPHVAGLAAYLMTLGKTTAASACR 250
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 148 SGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTAT---VYD-NTGKPLK 195
SGTSMA PHV G AA + S + + + L T AT V D TG P K
Sbjct: 221 SGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADKVTDAKTGSPNK 272
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 148 SGTSMACPHVTGAAAFI 164
SGTSMA PH+ G AA++
Sbjct: 222 SGTSMATPHIAGLAAYL 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,512,398
Number of Sequences: 62578
Number of extensions: 424253
Number of successful extensions: 927
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 830
Number of HSP's gapped (non-prelim): 99
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)