Query 040558
Match_columns 367
No_of_seqs 311 out of 2734
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:35:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05562 Peptidases_S53_like Pe 99.9 5.2E-22 1.1E-26 189.2 11.2 116 78-219 143-274 (275)
2 cd07478 Peptidases_S8_CspA-lik 99.8 2.5E-20 5.5E-25 189.2 9.8 117 69-210 328-455 (455)
3 cd07475 Peptidases_S8_C5a_Pept 99.8 1.5E-19 3.2E-24 177.3 14.0 119 81-219 214-346 (346)
4 cd07474 Peptidases_S8_subtilis 99.8 1.6E-19 3.4E-24 173.0 12.8 108 91-217 188-295 (295)
5 cd07489 Peptidases_S8_5 Peptid 99.8 6E-19 1.3E-23 170.8 13.3 126 78-223 176-302 (312)
6 cd05561 Peptidases_S8_4 Peptid 99.8 4.4E-19 9.5E-24 165.8 11.1 101 77-210 139-239 (239)
7 cd07497 Peptidases_S8_14 Pepti 99.8 2.5E-19 5.5E-24 173.6 8.9 102 78-184 189-311 (311)
8 cd07479 Peptidases_S8_SKI-1_li 99.8 6E-19 1.3E-23 166.4 10.3 98 77-187 148-253 (255)
9 cd07481 Peptidases_S8_Bacillop 99.8 1.6E-18 3.4E-23 164.1 11.2 93 78-185 170-264 (264)
10 PTZ00262 subtilisin-like prote 99.8 2.5E-18 5.4E-23 177.2 11.1 113 80-224 502-618 (639)
11 cd07493 Peptidases_S8_9 Peptid 99.7 2.1E-18 4.5E-23 162.9 8.2 94 77-185 168-261 (261)
12 cd04847 Peptidases_S8_Subtilis 99.7 2.3E-18 5.1E-23 165.1 6.8 106 78-185 167-291 (291)
13 PF00082 Peptidase_S8: Subtila 99.7 1.8E-18 3.9E-23 164.0 5.0 120 81-219 163-282 (282)
14 cd04857 Peptidases_S8_Tripepti 99.7 7.7E-18 1.7E-22 167.6 8.7 82 92-186 326-411 (412)
15 cd07476 Peptidases_S8_thiazoli 99.7 2E-17 4.2E-22 157.2 10.0 95 77-189 156-254 (267)
16 cd07487 Peptidases_S8_1 Peptid 99.7 3.8E-17 8.2E-22 153.7 11.1 102 78-185 159-264 (264)
17 cd07483 Peptidases_S8_Subtilis 99.7 8.4E-17 1.8E-21 154.6 11.8 86 80-185 203-291 (291)
18 cd04843 Peptidases_S8_11 Pepti 99.7 3.8E-16 8.2E-21 149.1 11.0 94 81-185 177-277 (277)
19 cd04077 Peptidases_S8_PCSK9_Pr 99.7 5E-16 1.1E-20 146.0 11.0 91 77-186 165-255 (255)
20 cd07498 Peptidases_S8_15 Pepti 99.7 5.1E-16 1.1E-20 144.7 11.0 95 77-183 148-242 (242)
21 cd04842 Peptidases_S8_Kp43_pro 99.7 9.2E-16 2E-20 146.7 12.9 102 78-185 169-293 (293)
22 cd07477 Peptidases_S8_Subtilis 99.6 1.9E-15 4.1E-20 139.3 10.3 86 77-183 144-229 (229)
23 cd07496 Peptidases_S8_13 Pepti 99.6 2E-15 4.3E-20 144.4 10.6 98 78-183 186-285 (285)
24 cd07490 Peptidases_S8_6 Peptid 99.6 1.1E-15 2.5E-20 143.2 8.1 98 78-185 147-254 (254)
25 cd07473 Peptidases_S8_Subtilis 99.6 2.7E-15 5.8E-20 141.1 10.6 85 81-185 175-259 (259)
26 cd07485 Peptidases_S8_Fervidol 99.6 3.2E-15 6.9E-20 142.1 10.1 92 77-183 180-273 (273)
27 cd04059 Peptidases_S8_Protein_ 99.6 5.5E-15 1.2E-19 141.8 11.3 87 81-185 204-297 (297)
28 cd07484 Peptidases_S8_Thermita 99.6 4.2E-15 9.2E-20 140.0 10.1 89 77-187 171-259 (260)
29 cd07494 Peptidases_S8_10 Pepti 99.5 1.5E-14 3.2E-19 139.6 9.8 106 76-187 159-285 (298)
30 cd02133 PA_C5a_like PA_C5a_lik 99.5 8.7E-15 1.9E-19 126.4 5.5 94 2-104 44-141 (143)
31 cd07480 Peptidases_S8_12 Pepti 99.5 2.3E-14 4.9E-19 138.1 7.9 108 85-215 189-296 (297)
32 cd04852 Peptidases_S8_3 Peptid 99.5 1.7E-14 3.7E-19 139.5 6.8 72 111-185 236-307 (307)
33 cd07488 Peptidases_S8_2 Peptid 99.5 2.9E-14 6.3E-19 134.0 7.1 90 79-183 148-246 (247)
34 cd04848 Peptidases_S8_Autotran 99.5 8.9E-14 1.9E-18 130.4 10.0 90 80-185 176-267 (267)
35 cd07492 Peptidases_S8_8 Peptid 99.5 3.8E-14 8.2E-19 130.5 7.4 85 77-185 138-222 (222)
36 cd07482 Peptidases_S8_Lantibio 99.5 4.4E-14 9.5E-19 135.1 7.1 99 78-183 186-294 (294)
37 KOG1114 Tripeptidyl peptidase 99.4 6.8E-13 1.5E-17 138.7 11.7 102 93-219 452-557 (1304)
38 KOG1153 Subtilisin-related pro 99.4 2.7E-13 5.9E-18 132.5 7.7 143 20-185 302-461 (501)
39 cd07491 Peptidases_S8_7 Peptid 99.4 8.3E-13 1.8E-17 124.1 8.6 72 78-167 158-229 (247)
40 cd00306 Peptidases_S8_S53 Pept 99.3 2.1E-11 4.5E-16 111.4 10.8 88 77-183 153-241 (241)
41 KOG4266 Subtilisin kexin isozy 99.3 4.3E-12 9.3E-17 127.9 6.5 115 81-220 344-466 (1033)
42 cd02120 PA_subtilisin_like PA_ 99.2 4.3E-12 9.3E-17 106.7 3.3 75 2-80 48-126 (126)
43 PF02225 PA: PA domain; Inter 99.2 9.6E-12 2.1E-16 100.2 2.5 65 2-70 30-101 (101)
44 cd04816 PA_SaNapH_like PA_SaNa 99.1 3.7E-11 8.1E-16 100.9 3.8 74 2-79 40-121 (122)
45 cd04818 PA_subtilisin_1 PA_sub 99.1 4.5E-11 9.7E-16 99.7 3.8 74 2-79 37-117 (118)
46 cd02130 PA_ScAPY_like PA_ScAPY 99.1 5.7E-11 1.2E-15 99.7 4.1 74 2-79 41-121 (122)
47 cd02127 PA_hPAP21_like PA_hPAP 99.1 6.5E-11 1.4E-15 98.9 4.2 75 2-80 31-116 (118)
48 cd00538 PA PA: Protease-associ 99.1 9.5E-11 2.1E-15 98.0 4.3 73 2-78 43-124 (126)
49 cd02126 PA_EDEM3_like PA_EDEM3 99.1 7.4E-11 1.6E-15 99.7 3.6 73 2-78 37-124 (126)
50 cd02122 PA_GRAIL_like PA _GRAI 99.1 9.6E-11 2.1E-15 100.5 4.1 74 2-79 57-137 (138)
51 cd02132 PA_GO-like PA_GO-like: 99.0 1.3E-10 2.7E-15 100.0 3.8 73 2-78 56-137 (139)
52 cd02129 PA_hSPPL_like PA_hSPPL 99.0 1.6E-10 3.4E-15 96.5 3.9 67 2-72 41-114 (120)
53 cd04817 PA_VapT_like PA_VapT_l 99.0 2.1E-10 4.5E-15 98.3 3.9 68 2-72 53-133 (139)
54 cd02125 PA_VSR PA_VSR: Proteas 98.9 6.4E-10 1.4E-14 94.1 3.7 72 4-79 41-126 (127)
55 cd04813 PA_1 PA_1: Protease-as 98.9 8.7E-10 1.9E-14 92.0 4.1 67 2-72 36-111 (117)
56 cd02124 PA_PoS1_like PA_PoS1_l 98.9 6.9E-10 1.5E-14 94.2 3.5 72 3-79 53-128 (129)
57 cd02123 PA_C_RZF_like PA_C-RZF 98.8 1.9E-09 4.2E-14 94.1 4.0 70 2-75 64-142 (153)
58 cd04819 PA_2 PA_2: Protease-as 98.8 6.3E-09 1.4E-13 88.0 4.4 69 2-74 41-121 (127)
59 PF06280 DUF1034: Fn3-like dom 98.7 3.6E-07 7.9E-12 75.4 12.8 87 273-363 1-112 (112)
60 COG1404 AprE Subtilisin-like s 98.4 3.8E-07 8.2E-12 91.9 6.7 87 82-185 305-397 (508)
61 cd02128 PA_TfR PA_TfR: Proteas 98.3 4.1E-07 9E-12 81.3 2.7 37 2-41 52-89 (183)
62 cd04815 PA_M28_2 PA_M28_2: Pro 98.3 5.6E-07 1.2E-11 76.9 3.3 72 2-77 36-131 (134)
63 cd04056 Peptidases_S53 Peptida 98.1 4E-05 8.6E-10 76.1 12.5 48 108-169 249-299 (361)
64 KOG2442 Uncharacterized conser 97.8 1E-05 2.2E-10 80.7 3.3 74 2-79 92-174 (541)
65 cd04814 PA_M28_1 PA_M28_1: Pro 97.7 3.9E-05 8.6E-10 66.0 4.9 37 2-41 44-99 (142)
66 cd04820 PA_M28_1_1 PA_M28_1_1: 97.7 4.7E-05 1E-09 65.2 5.1 37 2-41 46-95 (137)
67 cd04822 PA_M28_1_3 PA_M28_1_3: 97.7 6.1E-05 1.3E-09 65.5 5.4 40 2-41 44-99 (151)
68 cd02131 PA_hNAALADL2_like PA_h 97.7 4.4E-05 9.5E-10 65.9 4.5 36 3-41 38-74 (153)
69 cd02121 PA_GCPII_like PA_GCPII 97.5 0.00011 2.4E-09 67.8 5.1 36 3-41 69-105 (220)
70 KOG3920 Uncharacterized conser 97.0 0.0012 2.5E-08 57.0 4.7 74 3-80 85-171 (193)
71 PF14874 PapD-like: Flagellar- 96.8 0.042 9.1E-07 44.0 12.5 80 285-366 22-101 (102)
72 KOG4628 Predicted E3 ubiquitin 96.8 0.00091 2E-08 65.3 3.1 64 5-71 79-148 (348)
73 cd04821 PA_M28_1_2 PA_M28_1_2: 96.5 0.003 6.5E-08 55.4 4.2 40 2-41 46-102 (157)
74 PF10633 NPCBM_assoc: NPCBM-as 95.0 0.091 2E-06 40.1 6.4 54 285-338 7-61 (78)
75 KOG3526 Subtilisin-like propro 93.9 0.0067 1.5E-07 59.3 -2.6 76 145-220 379-458 (629)
76 PF11614 FixG_C: IG-like fold 91.8 1.2 2.6E-05 36.6 8.4 53 285-338 33-85 (118)
77 COG1470 Predicted membrane pro 85.2 8.2 0.00018 39.4 10.4 68 285-352 399-468 (513)
78 PF06030 DUF916: Bacterial pro 85.0 9.8 0.00021 31.8 9.4 68 284-353 28-120 (121)
79 PF00345 PapD_N: Pili and flag 81.1 24 0.00052 28.9 10.3 53 285-339 16-75 (122)
80 COG4934 Predicted protease [Po 80.0 1.8 3.9E-05 48.7 3.9 26 143-168 472-497 (1174)
81 PF00635 Motile_Sperm: MSP (Ma 78.8 14 0.00031 29.2 8.0 50 285-337 20-69 (109)
82 PF07718 Coatamer_beta_C: Coat 78.3 11 0.00025 32.3 7.4 68 285-353 71-139 (140)
83 COG1470 Predicted membrane pro 76.3 44 0.00095 34.4 12.0 60 285-344 286-352 (513)
84 KOG3525 Subtilisin-like propro 73.4 1.8 3.8E-05 44.2 1.5 74 146-219 251-324 (431)
85 TIGR02745 ccoG_rdxA_fixG cytoc 72.3 17 0.00038 37.1 8.3 53 285-338 348-400 (434)
86 PRK15098 beta-D-glucoside gluc 68.1 16 0.00036 40.0 7.6 51 285-338 669-728 (765)
87 smart00635 BID_2 Bacterial Ig- 66.3 16 0.00034 27.9 5.2 40 312-355 4-43 (81)
88 KOG2195 Transferrin receptor a 65.2 6.6 0.00014 42.5 3.7 36 3-41 182-218 (702)
89 PLN03080 Probable beta-xylosid 61.1 25 0.00055 38.7 7.4 76 285-361 686-778 (779)
90 PF07610 DUF1573: Protein of u 51.7 66 0.0014 21.6 5.7 44 289-335 2-45 (45)
91 PRK15308 putative fimbrial pro 51.1 1.5E+02 0.0033 27.7 9.8 52 285-337 33-100 (234)
92 PF07705 CARDB: CARDB; InterP 47.9 1.2E+02 0.0026 23.0 9.2 51 285-338 21-72 (101)
93 PF02845 CUE: CUE domain; Int 45.7 21 0.00045 23.7 2.4 25 161-185 5-29 (42)
94 PF12690 BsuPI: Intracellular 38.8 1.8E+02 0.0039 22.4 7.3 53 285-338 2-71 (82)
95 PF08260 Kinin: Insect kinin p 36.9 16 0.00036 15.8 0.5 6 97-102 3-8 (8)
96 TIGR00845 caca sodium/calcium 36.6 3E+02 0.0064 31.1 10.6 25 161-185 323-347 (928)
97 PF05506 DUF756: Domain of unk 34.4 2.1E+02 0.0046 21.9 10.2 62 285-354 20-81 (89)
98 PF13940 Ldr_toxin: Toxin Ldr, 33.1 32 0.00068 22.1 1.5 13 152-164 14-26 (35)
99 PRK15019 CsdA-binding activato 31.9 45 0.00098 28.9 2.9 34 144-178 76-109 (147)
100 TIGR03391 FeS_syn_CsdE cystein 31.5 47 0.001 28.4 2.9 34 144-178 71-104 (138)
101 PRK13202 ureB urease subunit b 28.9 1.6E+02 0.0034 24.0 5.2 49 285-334 21-83 (104)
102 PRK15208 long polar fimbrial c 28.5 3.8E+02 0.0081 24.8 8.6 52 285-337 37-92 (228)
103 smart00546 CUE Domain that may 27.5 86 0.0019 20.7 3.1 25 160-184 5-29 (43)
104 PRK09296 cysteine desufuration 27.4 61 0.0013 27.7 2.9 34 144-178 66-99 (138)
105 TIGR00192 urease_beta urease, 26.7 2.2E+02 0.0048 23.0 5.7 48 285-333 20-81 (101)
106 PF04255 DUF433: Protein of un 26.6 1.4E+02 0.0031 21.0 4.3 40 142-181 9-54 (56)
107 PF08029 HisG_C: HisG, C-termi 26.5 1.1E+02 0.0024 23.2 3.9 20 20-39 51-71 (75)
108 COG4882 Predicted aminopeptida 26.3 1.3E+02 0.0028 30.2 5.2 62 2-67 86-160 (486)
109 PF02657 SufE: Fe-S metabolism 26.3 68 0.0015 26.8 3.0 35 144-179 57-91 (125)
110 PF11611 DUF4352: Domain of un 26.2 1.9E+02 0.0042 23.0 5.7 55 285-340 38-104 (123)
111 PRK13203 ureB urease subunit b 25.9 2.3E+02 0.0049 23.0 5.7 14 285-298 20-33 (102)
112 PF00699 Urease_beta: Urease b 25.2 3E+02 0.0066 22.2 6.2 14 285-298 19-32 (100)
113 cd00407 Urease_beta Urease bet 25.2 2.8E+02 0.0062 22.4 6.1 48 285-333 20-81 (101)
114 COG2166 sufE Cysteine desulfur 24.2 69 0.0015 27.7 2.6 35 143-178 70-104 (144)
115 PF01345 DUF11: Domain of unkn 23.9 1.9E+02 0.0042 21.2 4.9 29 285-313 43-72 (76)
116 COG4856 Uncharacterized protei 23.4 3.2E+02 0.007 27.5 7.4 52 287-338 94-147 (403)
117 PRK13201 ureB urease subunit b 23.1 2.8E+02 0.006 23.6 5.9 14 285-298 20-33 (136)
118 PRK13205 ureB urease subunit b 23.1 2.7E+02 0.0059 24.3 6.0 14 285-298 20-33 (162)
119 TIGR01451 B_ant_repeat conserv 21.2 2.7E+02 0.0059 19.3 4.8 36 285-322 14-50 (53)
120 PRK13204 ureB urease subunit b 20.9 3.1E+02 0.0067 24.0 5.9 49 285-334 43-105 (159)
121 PRK09372 ribonuclease activity 20.2 1.4E+02 0.003 26.1 3.8 34 5-38 57-93 (159)
122 PF13598 DUF4139: Domain of un 20.1 6.8E+02 0.015 23.8 9.1 21 345-365 289-314 (317)
No 1
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.87 E-value=5.2e-22 Score=189.23 Aligned_cols=116 Identities=28% Similarity=0.231 Sum_probs=92.4
Q ss_pred eeecccccccccCCCCccc---------------cCCCCCCCCCCCCCcCCceeecCc-cEEEeecCCCCCCCCCCCCCC
Q 040558 78 ATILPTVDVQRYKPAPVVA---------------YFSSRGPGELTENILKPDVTAPGV-AILAAIVPKVNAGSFPIGKKP 141 (367)
Q Consensus 78 ~~i~~~~~v~~~~~~~~~a---------------~fSs~Gp~~~~~~~~KPDi~APG~-~I~sa~~~~~~~~~~~~~~~~ 141 (367)
+..+..++|++.+..+..+ .|+++||.. ...+||||+|||+ ++.+.+..
T Consensus 143 a~~~~vitVgA~~~~~~~~~~s~~~~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~------------- 207 (275)
T cd05562 143 AAAPGAIAVGAVDYGNTPAFGSDPAPGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG------------- 207 (275)
T ss_pred CCCCCeEEEEeeccCCCcccccccccCCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC-------------
Confidence 4556677787766555444 355666654 5689999999975 44444432
Q ss_pred CceEEeCccccchHHHHHHHHHHHhhCCCCCHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCCcccCccChhhhcC
Q 040558 142 AGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNTGKPLKNNAGSTASPHETGVGEISPLKALN 219 (367)
Q Consensus 142 ~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~tA~~~~~~g~~~~~~~~~~~~~~~~G~G~in~~~A~~ 219 (367)
+.|..++|||||||||||++|||++++|+|++++||++|++||+++. .+..+..||||+||+.+|++
T Consensus 208 ~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~-----------~~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 208 DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG-----------EPGYDNASGSGLVDADRAVA 274 (275)
T ss_pred CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC-----------CCCCCCCcCcCcccHHHHhh
Confidence 67999999999999999999999999999999999999999998753 23456789999999999986
No 2
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.82 E-value=2.5e-20 Score=189.19 Aligned_cols=117 Identities=34% Similarity=0.489 Sum_probs=96.5
Q ss_pred eecccCCCceeec----ccccccccCCC-CccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCc
Q 040558 69 YINSTKNPTATIL----PTVDVQRYKPA-PVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAG 143 (367)
Q Consensus 69 ~~~~~~~~~~~i~----~~~~v~~~~~~-~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~ 143 (367)
|+++..+.+.+++ ..++|++.+.. +.++.||||||+. ++++||||+|||++|+++++. +.
T Consensus 328 f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~ 392 (455)
T cd07478 328 FLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GG 392 (455)
T ss_pred eecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecC-------------Cc
Confidence 4455555555554 44678876654 4699999999986 789999999999999999885 68
Q ss_pred eEEeCccccchHHHHHHHHHHHhhC------CCCCHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCCcccC
Q 040558 144 YAIKSGTSMACPHVTGAAAFIRSVH------RRWSSSIIKSALMTTATVYDNTGKPLKNNAGSTASPHETGVG 210 (367)
Q Consensus 144 y~~~sGTSmAaP~VAG~aALl~~~~------p~~s~~~ik~~L~~tA~~~~~~g~~~~~~~~~~~~~~~~G~G 210 (367)
|..++|||||||||||++|||+|.+ |.|++++||++|+++|++.. ...+++.++|||
T Consensus 393 ~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~----------~~~~pn~~~GyG 455 (455)
T cd07478 393 YTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRP----------GDEYPNPEWGYG 455 (455)
T ss_pred EEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCC----------CCCCCCCCCCCC
Confidence 9999999999999999999999864 56799999999999999763 235678889998
No 3
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.81 E-value=1.5e-19 Score=177.29 Aligned_cols=119 Identities=35% Similarity=0.457 Sum_probs=96.2
Q ss_pred cccccccccC------CCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccch
Q 040558 81 LPTVDVQRYK------PAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMAC 154 (367)
Q Consensus 81 ~~~~~v~~~~------~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAa 154 (367)
...++|++.+ ..+.++.||+|||.. ...+||||+|||.+|+++... +.|..++||||||
T Consensus 214 ~~~i~Vga~~~~~~~~~~~~~~~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~Aa 278 (346)
T cd07475 214 DDVLTVASANKKVPNPNGGQMSGFSSWGPTP--DLDLKPDITAPGGNIYSTVND-------------NTYGYMSGTSMAS 278 (346)
T ss_pred CCceEEeecccccCCCCCCccCCCcCCCCCc--ccCcCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHH
Confidence 3444555543 667899999999986 788999999999999998765 6799999999999
Q ss_pred HHHHHHHHHHHhh----CCCCCHHH----HHHHHhhccccccCCCCCCCCCCCCCCCCCCcccCccChhhhcC
Q 040558 155 PHVTGAAAFIRSV----HRRWSSSI----IKSALMTTATVYDNTGKPLKNNAGSTASPHETGVGEISPLKALN 219 (367)
Q Consensus 155 P~VAG~aALl~~~----~p~~s~~~----ik~~L~~tA~~~~~~g~~~~~~~~~~~~~~~~G~G~in~~~A~~ 219 (367)
|+|||++|||+|+ +|.|++.+ ||.+|++||.+... .........+..+|+|+||+.+|++
T Consensus 279 P~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~-----~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 279 PHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLD-----SEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccc-----cCCCCccCCccccCcchhcHHHhhC
Confidence 9999999999997 78999877 78888999984211 1122445677889999999999985
No 4
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.81 E-value=1.6e-19 Score=173.03 Aligned_cols=108 Identities=43% Similarity=0.661 Sum_probs=88.8
Q ss_pred CCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHHHHHHHHHHHhhCCC
Q 040558 91 PAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRR 170 (367)
Q Consensus 91 ~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ 170 (367)
.......|+++|+.. ....+||||+|||++|++++.... ..|..++|||||||+|||++|||+|++|.
T Consensus 188 ~~~~~~~~~s~~~~~-~~~~~kpdv~apG~~i~~~~~~~~-----------~~~~~~~GTS~AaP~vaG~aAll~~~~p~ 255 (295)
T cd07474 188 EADTVGPSSSRGPPT-SDSAIKPDIVAPGVDIMSTAPGSG-----------TGYARMSGTSMAAPHVAGAAALLKQAHPD 255 (295)
T ss_pred CCCceeccCCCCCCC-CCCCcCCCEECCcCceEeeccCCC-----------CceEEeccHHHHHHHHHHHHHHHHhhCCC
Confidence 345666777766543 367899999999999999987532 67999999999999999999999999999
Q ss_pred CCHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCCcccCccChhhh
Q 040558 171 WSSSIIKSALMTTATVYDNTGKPLKNNAGSTASPHETGVGEISPLKA 217 (367)
Q Consensus 171 ~s~~~ik~~L~~tA~~~~~~g~~~~~~~~~~~~~~~~G~G~in~~~A 217 (367)
|++++||++|++||.+....+ ....++..+|+|+||+.+|
T Consensus 256 l~~~~v~~~L~~tA~~~~~~~-------~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 256 WSPAQIKAALMNTAKPLYDSD-------GVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred CCHHHHHHHHHhhCcccccCC-------CCcCChhccCcceeccccC
Confidence 999999999999999764322 1223567899999999986
No 5
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.79 E-value=6e-19 Score=170.84 Aligned_cols=126 Identities=35% Similarity=0.434 Sum_probs=101.7
Q ss_pred eeecccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHHH
Q 040558 78 ATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHV 157 (367)
Q Consensus 78 ~~i~~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~V 157 (367)
+..+..++|++.+ +.||+|||.. ....||||+|||++++++++... +.|..++|||||||+|
T Consensus 176 ~~~~~vi~Vga~~-----~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~v 237 (312)
T cd07489 176 ASGRGVIAVASVD-----SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG-----------GGYAVLSGTSMATPYV 237 (312)
T ss_pred ccCCCeEEEEEec-----CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC-----------CceEeeccHHHHHHHH
Confidence 4455666777655 8899999986 67899999999999999987632 4699999999999999
Q ss_pred HHHHHHHHhhC-CCCCHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCCcccCccChhhhcCcCcc
Q 040558 158 TGAAAFIRSVH-RRWSSSIIKSALMTTATVYDNTGKPLKNNAGSTASPHETGVGEISPLKALNPGLV 223 (367)
Q Consensus 158 AG~aALl~~~~-p~~s~~~ik~~L~~tA~~~~~~g~~~~~~~~~~~~~~~~G~G~in~~~A~~~~lv 223 (367)
||++|||++++ |.+++.+|+++|++||..+...+..- .....++...+|+|+||+.+|+...-.
T Consensus 238 aG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~--~~~~~~~~~~~G~G~vn~~~a~~~~~~ 302 (312)
T cd07489 238 AGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTS--ALPDLAPVAQQGAGLVNAYKALYATTT 302 (312)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCc--cccCCCCHhhcCcceeeHHHHhcCCcc
Confidence 99999999999 99999999999999999764322110 011135678899999999999995443
No 6
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.79 E-value=4.4e-19 Score=165.78 Aligned_cols=101 Identities=27% Similarity=0.304 Sum_probs=88.5
Q ss_pred ceeecccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHH
Q 040558 77 TATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPH 156 (367)
Q Consensus 77 ~~~i~~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 156 (367)
++..+..++|.+.+..+.++.||++|+.. ||+|||++|+++.+. +.|..++||||||||
T Consensus 139 Pa~~~~vi~V~a~~~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~-------------~~~~~~sGTS~AaP~ 197 (239)
T cd05561 139 PAAYPGVIAVTAVDARGRLYREANRGAHV--------DFAAPGVDVWVAAPG-------------GGYRYVSGTSFAAPF 197 (239)
T ss_pred cccCCCceEEEeecCCCCccccCCCCCcc--------eEEccccceecccCC-------------CCEEEeCCHHHHHHH
Confidence 34556777888888889999999999865 999999999987654 679999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCCcccC
Q 040558 157 VTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNTGKPLKNNAGSTASPHETGVG 210 (367)
Q Consensus 157 VAG~aALl~~~~p~~s~~~ik~~L~~tA~~~~~~g~~~~~~~~~~~~~~~~G~G 210 (367)
|||++|||+|++| ++++||+++|++||..+. .+..+..||||
T Consensus 198 vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g-----------~~~~d~~~G~G 239 (239)
T cd05561 198 VTAALALLLQASP-LAPDDARARLAATAKDLG-----------PPGRDPVFGYG 239 (239)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHhhccC-----------CCCcCCCcCCC
Confidence 9999999999999 999999999999999763 34566788988
No 7
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.78 E-value=2.5e-19 Score=173.56 Aligned_cols=102 Identities=27% Similarity=0.332 Sum_probs=81.4
Q ss_pred eeecccccccccC---------------CCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCC
Q 040558 78 ATILPTVDVQRYK---------------PAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPA 142 (367)
Q Consensus 78 ~~i~~~~~v~~~~---------------~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~ 142 (367)
+.....++|++.+ ..+.++.||||||.. ++++||||+|||++|+++.+...... ......
T Consensus 189 a~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~---~~~~~~ 263 (311)
T cd07497 189 GAASLAISVGAATNFDYRPFYLFGYLPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGG---ALDGNE 263 (311)
T ss_pred cCCCCeEEEEeccCCcccchhhhccccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCc---ccCCCc
Confidence 4445666777654 246789999999987 78999999999999999877532100 011125
Q ss_pred ceEEeCccccchHHHHHHHHHHHhhCC------CCCHHHHHHHHhhcc
Q 040558 143 GYAIKSGTSMACPHVTGAAAFIRSVHR------RWSSSIIKSALMTTA 184 (367)
Q Consensus 143 ~y~~~sGTSmAaP~VAG~aALl~~~~p------~~s~~~ik~~L~~tA 184 (367)
.|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 264 ~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 264 AFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred ceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 799999999999999999999999876 589999999999997
No 8
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=99.78 E-value=6e-19 Score=166.43 Aligned_cols=98 Identities=30% Similarity=0.354 Sum_probs=85.2
Q ss_pred ceeecccccccccCCCCccccCCCCCCCCC----CCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCcccc
Q 040558 77 TATILPTVDVQRYKPAPVVAYFSSRGPGEL----TENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSM 152 (367)
Q Consensus 77 ~~~i~~~~~v~~~~~~~~~a~fSs~Gp~~~----~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 152 (367)
.+.....++|++.+..+.++.|||+|+... ..+.+||||+|||.+|+++... +.|..++||||
T Consensus 148 Pa~~~~vi~Vga~~~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~-------------~~~~~~sGTS~ 214 (255)
T cd07479 148 PADQMDVIGVGGIDFDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK-------------GGCRALSGTSV 214 (255)
T ss_pred cccCCCceEEeeeccCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC-------------CCeEEeccHHH
Confidence 355667788988888999999999996421 2567899999999999987654 57899999999
Q ss_pred chHHHHHHHHHHHhhCC----CCCHHHHHHHHhhccccc
Q 040558 153 ACPHVTGAAAFIRSVHR----RWSSSIIKSALMTTATVY 187 (367)
Q Consensus 153 AaP~VAG~aALl~~~~p----~~s~~~ik~~L~~tA~~~ 187 (367)
|||||||++|||++++| .++|++||++|+++|+++
T Consensus 215 AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 215 ASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 99999999999999998 799999999999999965
No 9
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.77 E-value=1.6e-18 Score=164.07 Aligned_cols=93 Identities=40% Similarity=0.541 Sum_probs=84.7
Q ss_pred eeecccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHHH
Q 040558 78 ATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHV 157 (367)
Q Consensus 78 ~~i~~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~V 157 (367)
+..+..++|++.+..+.++.||++||.. .+.+||||+|||.+|+++++. +.|..++|||||||+|
T Consensus 170 a~~~~vi~Vga~~~~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~-------------~~~~~~~GTS~AaP~v 234 (264)
T cd07481 170 ANYPESFAVGATDRNDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG-------------GGYGSSSGTSMAAPHV 234 (264)
T ss_pred CcCCceEEEEecCCCCCCccccCCCCCC--CCCcCceEEECCCCeEEecCC-------------CceEeeCcHHHHHHHH
Confidence 3455667888888899999999999986 588999999999999999876 6799999999999999
Q ss_pred HHHHHHHHhhCCC--CCHHHHHHHHhhccc
Q 040558 158 TGAAAFIRSVHRR--WSSSIIKSALMTTAT 185 (367)
Q Consensus 158 AG~aALl~~~~p~--~s~~~ik~~L~~tA~ 185 (367)
||++|||+|++|. ++++|||++|++||+
T Consensus 235 aG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 235 AGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9999999999999 999999999999985
No 10
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.76 E-value=2.5e-18 Score=177.23 Aligned_cols=113 Identities=20% Similarity=0.191 Sum_probs=87.0
Q ss_pred ecccccccccCCCC----ccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchH
Q 040558 80 ILPTVDVQRYKPAP----VVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155 (367)
Q Consensus 80 i~~~~~v~~~~~~~----~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 155 (367)
++..++|++.+... ..+.||++|. .++||+|||++|+++++. +.|..++|||||||
T Consensus 502 ~~nVIaVGAv~~d~~~~~s~s~~Snyg~-------~~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP 561 (639)
T PTZ00262 502 LRNVITVSNLIKDKNNQYSLSPNSFYSA-------KYCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAP 561 (639)
T ss_pred CCCEEEEeeccCCCCCcccccccccCCC-------CcceEEeCCCCeeeccCC-------------CceeecCCCchhHH
Confidence 45567777754321 2344556653 245999999999999876 67999999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCCcccCccChhhhcCcCccc
Q 040558 156 HVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNTGKPLKNNAGSTASPHETGVGEISPLKALNPGLVF 224 (367)
Q Consensus 156 ~VAG~aALl~~~~p~~s~~~ik~~L~~tA~~~~~~g~~~~~~~~~~~~~~~~G~G~in~~~A~~~~lv~ 224 (367)
||||+||||++++|+|++++|+++|++||..+... .+...+.|+||+.+|++..+-+
T Consensus 562 ~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 562 HVAAIASLILSINPSLSYEEVIRILKESIVQLPSL------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC------------CCccccCcEEcHHHHHHHHHhc
Confidence 99999999999999999999999999999865211 1112234899999999976644
No 11
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.75 E-value=2.1e-18 Score=162.93 Aligned_cols=94 Identities=31% Similarity=0.453 Sum_probs=84.9
Q ss_pred ceeecccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHH
Q 040558 77 TATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPH 156 (367)
Q Consensus 77 ~~~i~~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 156 (367)
++..+..++|++.+..+.++.||++||.. ++.+||||+|||.+|++.... +.|..++||||||||
T Consensus 168 Pa~~~~vi~Vga~~~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~-------------~~~~~~sGTS~AaP~ 232 (261)
T cd07493 168 PADAENVLSVGAVDANGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD-------------GNITYANGTSFSCPL 232 (261)
T ss_pred cccCCceEEEEEeccCCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC-------------CcEEeeCcHHHHHHH
Confidence 45667778899988889999999999986 788999999999999985443 679999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHhhccc
Q 040558 157 VTGAAAFIRSVHRRWSSSIIKSALMTTAT 185 (367)
Q Consensus 157 VAG~aALl~~~~p~~s~~~ik~~L~~tA~ 185 (367)
|||++|||++++|+|++.|||++|++||+
T Consensus 233 vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 233 IAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999984
No 12
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.74 E-value=2.3e-18 Score=165.14 Aligned_cols=106 Identities=24% Similarity=0.266 Sum_probs=79.9
Q ss_pred eeecccccccccCCCCcccc--------------CCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCC-----CCCCC
Q 040558 78 ATILPTVDVQRYKPAPVVAY--------------FSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAG-----SFPIG 138 (367)
Q Consensus 78 ~~i~~~~~v~~~~~~~~~a~--------------fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~-----~~~~~ 138 (367)
+..+..++|++.+..+..+. ||+|||.. .+.+||||+|||++|.+......... .....
T Consensus 167 a~~~~vItVgA~~~~~~~~~~s~~~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~ 244 (291)
T cd04847 167 ADSVNALTVGAITSDDDITDRARYSAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSS 244 (291)
T ss_pred HHhhhheeeeeeecCccCCCcccccccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcceeeecccC
Confidence 34456677777665555443 77788876 78999999999999987643211000 00011
Q ss_pred CCCCceEEeCccccchHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc
Q 040558 139 KKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTAT 185 (367)
Q Consensus 139 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~tA~ 185 (367)
.....|..++|||||||||||++|||++++|++++++||++|+++|+
T Consensus 245 ~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 245 PSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 22378999999999999999999999999999999999999999984
No 13
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.73 E-value=1.8e-18 Score=163.96 Aligned_cols=120 Identities=33% Similarity=0.378 Sum_probs=98.0
Q ss_pred cccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHHHHHH
Q 040558 81 LPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGA 160 (367)
Q Consensus 81 ~~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 160 (367)
...++|++.+..+.++.||++|+.. ..+.+||||+|||.+|++.++... ...|...+|||||||+|||+
T Consensus 163 ~~vi~Vg~~~~~~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~----------~~~~~~~~GTS~Aap~vag~ 231 (282)
T PF00082_consen 163 PNVITVGAVDNNGQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSD----------RGSYTSFSGTSFAAPVVAGA 231 (282)
T ss_dssp TTSEEEEEEETTSSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTE----------SEEEEEEESHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccc-cccccccccccccccccccccccc----------cccccccCcCCchHHHHHHH
Confidence 4446777777777889999997643 378999999999999988886521 03588899999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCCcccCccChhhhcC
Q 040558 161 AAFIRSVHRRWSSSIIKSALMTTATVYDNTGKPLKNNAGSTASPHETGVGEISPLKALN 219 (367)
Q Consensus 161 aALl~~~~p~~s~~~ik~~L~~tA~~~~~~g~~~~~~~~~~~~~~~~G~G~in~~~A~~ 219 (367)
+|||++++|.|++.+||.+|++||...... .....+..||+|+||+.+|++
T Consensus 232 ~All~~~~p~~~~~~i~~~l~~ta~~~~~~--------~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 232 AALLLSKYPNLTPAEIKALLINTADDLGST--------NGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHSBESSET--------TSSSSHHHHTTSBE-HHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHhCcccCcC--------CCCCCCCCccCChhCHHHHhC
Confidence 999999999999999999999999977411 123456678999999999974
No 14
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=99.72 E-value=7.7e-18 Score=167.65 Aligned_cols=82 Identities=29% Similarity=0.372 Sum_probs=70.9
Q ss_pred CCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHHHHHHHHHHHh----h
Q 040558 92 APVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRS----V 167 (367)
Q Consensus 92 ~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~ 167 (367)
.+.++.||||||.. ++.+||||+|||+.|.+. +... ...|..++|||||||||||++|||++ .
T Consensus 326 ~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~-p~~~----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~ 392 (412)
T cd04857 326 PGNQYTWSSRGPTA--DGALGVSISAPGGAIASV-PNWT----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAE 392 (412)
T ss_pred CCccccccccCCcc--cCCcCceEEeCCCcEEEc-ccCC----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhc
Confidence 45689999999987 899999999999999875 2110 15789999999999999999999975 4
Q ss_pred CCCCCHHHHHHHHhhcccc
Q 040558 168 HRRWSSSIIKSALMTTATV 186 (367)
Q Consensus 168 ~p~~s~~~ik~~L~~tA~~ 186 (367)
+|.|+|.+||++|++||++
T Consensus 393 ~~~~tp~~Vk~aL~~TA~~ 411 (412)
T cd04857 393 GIPYTPYSVRRALENTAKK 411 (412)
T ss_pred CCCCCHHHHHHHHHHhCcc
Confidence 7899999999999999985
No 15
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=99.72 E-value=2e-17 Score=157.19 Aligned_cols=95 Identities=31% Similarity=0.346 Sum_probs=84.4
Q ss_pred ceeecccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHH
Q 040558 77 TATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPH 156 (367)
Q Consensus 77 ~~~i~~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 156 (367)
++..+..++|++.+..+.++.||+||+.. .+|||+|||.+|+++++. +.|..++||||||||
T Consensus 156 Pa~~~~vi~Vga~~~~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~-------------~~~~~~sGTS~AaP~ 217 (267)
T cd07476 156 PAALPSVLAVGAMDDDGLPLKFSNWGADY-----RKKGILAPGENILGAALG-------------GEVVRRSGTSFAAAI 217 (267)
T ss_pred cccCCceEEEEeecCCCCeeeecCCCCCC-----CCceEEecCCCceeecCC-------------CCeEEeccHHHHHHH
Confidence 45667778999888888999999999753 378999999999999876 679999999999999
Q ss_pred HHHHHHHHHhhCCC----CCHHHHHHHHhhccccccC
Q 040558 157 VTGAAAFIRSVHRR----WSSSIIKSALMTTATVYDN 189 (367)
Q Consensus 157 VAG~aALl~~~~p~----~s~~~ik~~L~~tA~~~~~ 189 (367)
|||++|||+|++|. +++++||++|++||+++..
T Consensus 218 vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 218 VAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred HHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 99999999999886 9999999999999998743
No 16
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.71 E-value=3.8e-17 Score=153.72 Aligned_cols=102 Identities=37% Similarity=0.513 Sum_probs=85.0
Q ss_pred eeecccccccccCCCCc----cccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccc
Q 040558 78 ATILPTVDVQRYKPAPV----VAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMA 153 (367)
Q Consensus 78 ~~i~~~~~v~~~~~~~~----~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 153 (367)
+..+..++|++.+..+. ++.||++||.. .+.+||||+|||++|++..+.... ........|..++|||||
T Consensus 159 ~~~~~vi~Vga~~~~~~~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~----~~~~~~~~~~~~~GTS~A 232 (264)
T cd07487 159 GNSPKVITVGAVDDNGPHDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGN----PGAGVGSGYFEMSGTSMA 232 (264)
T ss_pred ccCCCceEEEeccCCCCCCccccccccCCCCC--CCCcCCCEEccccceEeccccccc----cCCCCCCceEeccccchH
Confidence 44556778888777666 89999999986 789999999999999998654210 111223689999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc
Q 040558 154 CPHVTGAAAFIRSVHRRWSSSIIKSALMTTAT 185 (367)
Q Consensus 154 aP~VAG~aALl~~~~p~~s~~~ik~~L~~tA~ 185 (367)
||+|||++|||++++|.+++.+||++|++||+
T Consensus 233 ap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 233 TPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred HHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 99999999999999999999999999999985
No 17
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.70 E-value=8.4e-17 Score=154.65 Aligned_cols=86 Identities=31% Similarity=0.380 Sum_probs=73.8
Q ss_pred ecccccccccCCCC---ccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHH
Q 040558 80 ILPTVDVQRYKPAP---VVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPH 156 (367)
Q Consensus 80 i~~~~~v~~~~~~~---~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 156 (367)
....++|++.+..+ .++.||++|+. ++||+|||++|+++.+. +.|..++||||||||
T Consensus 203 ~~~vi~Vga~~~~~~~~~~~~~Sn~G~~-------~vdi~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~ 262 (291)
T cd07483 203 ANNFITVGASSKKYENNLVANFSNYGKK-------NVDVFAPGERIYSTTPD-------------NEYETDSGTSMAAPV 262 (291)
T ss_pred cCCeeEEeeccccCCcccccccCCCCCC-------ceEEEeCCCCeEeccCc-------------CCeEeeccHHHHHHH
Confidence 34456677655433 48999999974 45999999999999765 679999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHhhccc
Q 040558 157 VTGAAAFIRSVHRRWSSSIIKSALMTTAT 185 (367)
Q Consensus 157 VAG~aALl~~~~p~~s~~~ik~~L~~tA~ 185 (367)
|||++|||+|++|.|++.|||++|++||.
T Consensus 263 vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 263 VSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999984
No 18
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.66 E-value=3.8e-16 Score=149.12 Aligned_cols=94 Identities=24% Similarity=0.155 Sum_probs=72.6
Q ss_pred cccccccccCCC-C-ccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHHHH
Q 040558 81 LPTVDVQRYKPA-P-VVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVT 158 (367)
Q Consensus 81 ~~~~~v~~~~~~-~-~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 158 (367)
+..++|++.+.. + .++.|||+|+.. ||.|||++|+++++..... ......+.|..++||||||||||
T Consensus 177 ~~vI~VgA~~~~~~~~~~~fSn~G~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~Va 245 (277)
T cd04843 177 SGAIMVGAGSSTTGHTRLAFSNYGSRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVA 245 (277)
T ss_pred CCeEEEEeccCCCCCccccccCCCCcc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHH
Confidence 346678776654 2 389999999976 9999999999998763311 01111133578999999999999
Q ss_pred HHHHHHHh----h-CCCCCHHHHHHHHhhccc
Q 040558 159 GAAAFIRS----V-HRRWSSSIIKSALMTTAT 185 (367)
Q Consensus 159 G~aALl~~----~-~p~~s~~~ik~~L~~tA~ 185 (367)
|++|||++ + +|+|+++|||++|+.|++
T Consensus 246 G~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 246 GAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 99999975 3 499999999999999874
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.65 E-value=5e-16 Score=146.01 Aligned_cols=91 Identities=36% Similarity=0.435 Sum_probs=81.2
Q ss_pred ceeecccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHH
Q 040558 77 TATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPH 156 (367)
Q Consensus 77 ~~~i~~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 156 (367)
.+..+..++|++.+..+..+.||++|+.. ||+|||.+|+++..... ..|..++|||||||+
T Consensus 165 pa~~~~vi~Vga~~~~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~ 225 (255)
T cd04077 165 PASAPEAITVGATDSDDARASFSNYGSCV--------DIFAPGVDILSAWIGSD-----------TATATLSGTSMAAPH 225 (255)
T ss_pred ccCCCceEEEeccCCCCCccCcccCCCCC--------cEEeCCCCeEecccCCC-----------CcEEeeCcHHHHHHH
Confidence 34566778899888889999999999976 99999999998876422 689999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHhhcccc
Q 040558 157 VTGAAAFIRSVHRRWSSSIIKSALMTTATV 186 (367)
Q Consensus 157 VAG~aALl~~~~p~~s~~~ik~~L~~tA~~ 186 (367)
|||++|||++++|.+++++||++|++||++
T Consensus 226 vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 226 VAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 999999999999999999999999999973
No 20
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.65 E-value=5.1e-16 Score=144.67 Aligned_cols=95 Identities=27% Similarity=0.301 Sum_probs=78.9
Q ss_pred ceeecccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHH
Q 040558 77 TATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPH 156 (367)
Q Consensus 77 ~~~i~~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 156 (367)
.+..+..++|++.+..+.+++||++|+.. |++|||++++........ ..+...+.|..++|||||||+
T Consensus 148 pa~~~~vi~Vga~~~~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~----~~~~~~~~~~~~~GTS~Aap~ 215 (242)
T cd07498 148 YAANPSVIAVAATDSNDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGS----AGDYPGGGYGSFSGTSFASPV 215 (242)
T ss_pred CcCCCCeEEEEEeCCCCCccCcCCCCCCe--------EEEeCcCCcccCCccccc----cccCCCCceEeeCcHHHHHHH
Confidence 45566778899988899999999999976 999999999887543210 011223678999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHhhc
Q 040558 157 VTGAAAFIRSVHRRWSSSIIKSALMTT 183 (367)
Q Consensus 157 VAG~aALl~~~~p~~s~~~ik~~L~~t 183 (367)
|||++|||+|++|+|++.+||++|++|
T Consensus 216 vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 216 AAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999999999875
No 21
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.65 E-value=9.2e-16 Score=146.69 Aligned_cols=102 Identities=39% Similarity=0.477 Sum_probs=80.2
Q ss_pred eeecccccccccCCCCc---------------cccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCC
Q 040558 78 ATILPTVDVQRYKPAPV---------------VAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPA 142 (367)
Q Consensus 78 ~~i~~~~~v~~~~~~~~---------------~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~ 142 (367)
+.....++|++.+..+. ++.||++||.. .+++||||+|||++|+++..... ........
T Consensus 169 a~~~~vi~Vga~~~~~~~~~~~~~~~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~----~~~~~~~~ 242 (293)
T cd04842 169 ATAKNVLTVGASNNPSVSNGEGGLGQSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG----GIGDTSDS 242 (293)
T ss_pred ccccceEEEeeccCCCcccccccccccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC----CCCCCChh
Confidence 34455567776665554 99999999986 78999999999999999875420 00112236
Q ss_pred ceEEeCccccchHHHHHHHHHHHhhC-----C---CCCHHHHHHHHhhccc
Q 040558 143 GYAIKSGTSMACPHVTGAAAFIRSVH-----R---RWSSSIIKSALMTTAT 185 (367)
Q Consensus 143 ~y~~~sGTSmAaP~VAG~aALl~~~~-----p---~~s~~~ik~~L~~tA~ 185 (367)
.|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 243 ~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 243 AYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred heeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 79999999999999999999999985 4 6677899999999985
No 22
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.62 E-value=1.9e-15 Score=139.31 Aligned_cols=86 Identities=37% Similarity=0.494 Sum_probs=77.7
Q ss_pred ceeecccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHH
Q 040558 77 TATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPH 156 (367)
Q Consensus 77 ~~~i~~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 156 (367)
++..+..++|++.+..+.+..||++|+.. |+.|||++|+++++. +.|..++|||||||+
T Consensus 144 pa~~~~vi~Vga~~~~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-------------~~~~~~~GTS~Aap~ 202 (229)
T cd07477 144 PAKYPSVIAVGAVDSNNNRASFSSTGPEV--------ELAAPGVDILSTYPN-------------NDYAYLSGTSMATPH 202 (229)
T ss_pred CCCCCCEEEEEeecCCCCcCCccCCCCCc--------eEEeCCCCeEEecCC-------------CCEEEEccHHHHHHH
Confidence 34556678899888899999999999865 999999999999875 678999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHhhc
Q 040558 157 VTGAAAFIRSVHRRWSSSIIKSALMTT 183 (367)
Q Consensus 157 VAG~aALl~~~~p~~s~~~ik~~L~~t 183 (367)
|||++|||+|++|.+++.+||++|++|
T Consensus 203 vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 203 VAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999999999876
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.62 E-value=2e-15 Score=144.44 Aligned_cols=98 Identities=30% Similarity=0.355 Sum_probs=79.1
Q ss_pred eeecccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCC--CCCCCCCCCceEEeCccccchH
Q 040558 78 ATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAG--SFPIGKKPAGYAIKSGTSMACP 155 (367)
Q Consensus 78 ~~i~~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP 155 (367)
+..+..++|++.+..+.++.||++|+.. ||+|||++|.++........ ..........|..++|||||||
T Consensus 186 a~~~~vi~Vga~~~~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP 257 (285)
T cd07496 186 ANCRGVIAVGATDLRGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAP 257 (285)
T ss_pred CCCCceEEEeccCCCCCcccccCCCCCC--------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHH
Confidence 4455677888889999999999999976 99999999998875432110 0011122367899999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHhhc
Q 040558 156 HVTGAAAFIRSVHRRWSSSIIKSALMTT 183 (367)
Q Consensus 156 ~VAG~aALl~~~~p~~s~~~ik~~L~~t 183 (367)
+|||++|||++++|+|++++||++|++|
T Consensus 258 ~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 258 HVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999875
No 24
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.61 E-value=1.1e-15 Score=143.21 Aligned_cols=98 Identities=37% Similarity=0.477 Sum_probs=81.4
Q ss_pred eeecccccccccCCCCccccCCCCC----------CCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEe
Q 040558 78 ATILPTVDVQRYKPAPVVAYFSSRG----------PGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIK 147 (367)
Q Consensus 78 ~~i~~~~~v~~~~~~~~~a~fSs~G----------p~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 147 (367)
+..+..++|++.+..+.++.||++| +.. .....|||++|||.+|++++... .....|..+
T Consensus 147 a~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~ 216 (254)
T cd07490 147 GSAYAALSVGAVDRDDEDAWFSSFGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRL 216 (254)
T ss_pred ccCCceeEEecccccCCccCccCCcccccccccCCCCC-ccCCcCceEEeccCCeEccccCC---------CCCCCeeec
Confidence 4456677888888889999999888 211 24568999999999999865321 112679999
Q ss_pred CccccchHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc
Q 040558 148 SGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTAT 185 (367)
Q Consensus 148 sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~tA~ 185 (367)
+|||||||+|||++|||++++|+|++.+||++|++||+
T Consensus 217 ~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 217 SGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999984
No 25
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.61 E-value=2.7e-15 Score=141.10 Aligned_cols=85 Identities=38% Similarity=0.541 Sum_probs=76.6
Q ss_pred cccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHHHHHH
Q 040558 81 LPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGA 160 (367)
Q Consensus 81 ~~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 160 (367)
+..++|++.+..+.++.||++|+. +||+.|||.++++..+. ..|..++|||||||+|||+
T Consensus 175 ~~vi~Vga~~~~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~-------------~~~~~~~GTS~AaP~vaG~ 234 (259)
T cd07473 175 DNIISVAATDSNDALASFSNYGKK-------TVDLAAPGVDILSTSPG-------------GGYGYMSGTSMATPHVAGA 234 (259)
T ss_pred CCeEEEEecCCCCCcCcccCCCCC-------CcEEEeccCCeEeccCC-------------CcEEEeccHhHHHHHHHHH
Confidence 456788888888999999999985 46999999999997654 6799999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHhhccc
Q 040558 161 AAFIRSVHRRWSSSIIKSALMTTAT 185 (367)
Q Consensus 161 aALl~~~~p~~s~~~ik~~L~~tA~ 185 (367)
+||++|++|.+++.+||++|++||+
T Consensus 235 ~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 235 AALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999984
No 26
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.60 E-value=3.2e-15 Score=142.15 Aligned_cols=92 Identities=32% Similarity=0.408 Sum_probs=79.6
Q ss_pred ceeecccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCc-cEEEeecCCCCCCCCCCCCCCCceEEeCccccchH
Q 040558 77 TATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGV-AILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155 (367)
Q Consensus 77 ~~~i~~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 155 (367)
.+.++..++|.+.+..+.++.||++|+.. ||+|||+ .|+++++.... .....|..++|||||||
T Consensus 180 pa~~~~vi~V~a~~~~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP 244 (273)
T cd07485 180 PAAYPGVIAVAALDTNDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAP 244 (273)
T ss_pred cccCCCeEEEEeccCCCCcCccccCCCce--------EEEeCCCCccccccccccC-------CCCCCeEeeccHHHHHH
Confidence 45667778899888899999999999876 9999999 89888765311 12267999999999999
Q ss_pred HHHHHHHHHHhhCCC-CCHHHHHHHHhhc
Q 040558 156 HVTGAAAFIRSVHRR-WSSSIIKSALMTT 183 (367)
Q Consensus 156 ~VAG~aALl~~~~p~-~s~~~ik~~L~~t 183 (367)
+|||++|||+|++|. +++.|||++|++|
T Consensus 245 ~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 245 HVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 999999999999999 9999999999886
No 27
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.59 E-value=5.5e-15 Score=141.80 Aligned_cols=87 Identities=22% Similarity=0.217 Sum_probs=74.4
Q ss_pred cccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCcc-------EEEeecCCCCCCCCCCCCCCCceEEeCccccc
Q 040558 81 LPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVA-------ILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMA 153 (367)
Q Consensus 81 ~~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 153 (367)
+..++|++.+..+.++.||++|+.. +++|||.. |+++.... ....|..++|||||
T Consensus 204 ~~vi~Vga~~~~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~A 265 (297)
T cd04059 204 IYTISVSAVTANGVRASYSEVGSSV--------LASAPSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAA 265 (297)
T ss_pred CceEEEEeeCCCCCCcCCCCCCCcE--------EEEecCCCCCCCCCceEeCCCCC----------CCCcccccCCcchh
Confidence 4567888888899999999999986 89999987 66554431 01467889999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc
Q 040558 154 CPHVTGAAAFIRSVHRRWSSSIIKSALMTTAT 185 (367)
Q Consensus 154 aP~VAG~aALl~~~~p~~s~~~ik~~L~~tA~ 185 (367)
||+|||++|||+|+||+|++.|||.+|++||+
T Consensus 266 aP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 266 APLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred hhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999985
No 28
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.59 E-value=4.2e-15 Score=140.01 Aligned_cols=89 Identities=38% Similarity=0.416 Sum_probs=80.4
Q ss_pred ceeecccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHH
Q 040558 77 TATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPH 156 (367)
Q Consensus 77 ~~~i~~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 156 (367)
.+.....++|++.+..+..+.||++|+.. |++|||++|++..+. +.|..++|||||||+
T Consensus 171 pa~~~~vi~Vga~~~~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~-------------~~~~~~~GTS~Aap~ 229 (260)
T cd07484 171 PAAYPGAIAVAATDQDDKRASFSNYGKWV--------DVSAPGGGILSTTPD-------------GDYAYMSGTSMATPH 229 (260)
T ss_pred CCCCCCeEEEEeeCCCCCcCCcCCCCCCc--------eEEeCCCCcEeecCC-------------CCEEEeeeHHHHHHH
Confidence 45566678888888889999999999865 999999999988765 679999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHhhccccc
Q 040558 157 VTGAAAFIRSVHRRWSSSIIKSALMTTATVY 187 (367)
Q Consensus 157 VAG~aALl~~~~p~~s~~~ik~~L~~tA~~~ 187 (367)
|||++||+++++| |++.+||++|++||+++
T Consensus 230 vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 230 VAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 9999999999999 99999999999999864
No 29
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.55 E-value=1.5e-14 Score=139.57 Aligned_cols=106 Identities=21% Similarity=0.148 Sum_probs=76.1
Q ss_pred Cceeeccccccccc--CCCCc-cccCCC--CCCCCCCCCCcCCcee----------------ecCccEEEeecCCCCCCC
Q 040558 76 PTATILPTVDVQRY--KPAPV-VAYFSS--RGPGELTENILKPDVT----------------APGVAILAAIVPKVNAGS 134 (367)
Q Consensus 76 ~~~~i~~~~~v~~~--~~~~~-~a~fSs--~Gp~~~~~~~~KPDi~----------------APG~~I~sa~~~~~~~~~ 134 (367)
.++..+..++|++. +..+. ...+++ +... ..+++.|||++ |||..|.+++....
T Consensus 159 ~Pa~~p~viaVga~~~~~~g~~~~~~~~~~~~s~-~~~g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~---- 233 (298)
T cd07494 159 FPAQHPEVIAAGGVFVDEDGARRASSYASGFRSK-IYPGRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFP---- 233 (298)
T ss_pred cCCCCCCEEEEEeEeccCCCcccccccccCcccc-cCCCCccCccccccCcCCcccccccccCCCcceeccccCCC----
Confidence 45667777888875 22332 223332 3322 24677899984 68988876553210
Q ss_pred CCCCCCCCceEEeCccccchHHHHHHHHHHHhhCCCCCHHHHHHHHhhccccc
Q 040558 135 FPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVY 187 (367)
Q Consensus 135 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~tA~~~ 187 (367)
........|..++|||||||||||++|||++++|.|++++||.+|++||.++
T Consensus 234 -~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~ 285 (298)
T cd07494 234 -DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDV 285 (298)
T ss_pred -CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccc
Confidence 0011226799999999999999999999999999999999999999999966
No 30
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.53 E-value=8.7e-15 Score=126.35 Aligned_cols=94 Identities=24% Similarity=0.329 Sum_probs=77.7
Q ss_pred CCCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCCCCCC--C-CCcccceeecccccceeeEEeecccCCCc
Q 040558 2 KKVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYEKHVP--F-DSGIFPLSEVGSVAGFQIIHYINSTKNPT 77 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~~~~~--~-~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 77 (367)
.+++||||||+|| .|.|.+| .+++++||+|+|++|+. .+... . ....+|+++|+.++|.+|++|+++ +
T Consensus 44 ~dv~GkIvL~~rg---~c~~~~K~~~a~~aGA~gvIi~n~~-~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~----~ 115 (143)
T cd02133 44 KDVKGKIALIQRG---EITFVEKIANAKAAGAVGVIIYNNV-DGLIPGTLGEAVFIPVVFISKEDGEALKAALES----S 115 (143)
T ss_pred CCccceEEEEECC---CCCHHHHHHHHHHCCCeEEEEeecC-CCcccccCCCCCeEeEEEecHHHHHHHHHHHhC----C
Confidence 4799999999999 8999999 99999999999999987 54332 1 124689999999999999999987 5
Q ss_pred eeecccccccccCCCCccccCCCCCCC
Q 040558 78 ATILPTVDVQRYKPAPVVAYFSSRGPG 104 (367)
Q Consensus 78 ~~i~~~~~v~~~~~~~~~a~fSs~Gp~ 104 (367)
+++.+..+.. ..+++.++.||||||.
T Consensus 116 ~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 116 KKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred CeEEEEeccc-cccCCccccccCcCCC
Confidence 5666555444 4577889999999995
No 31
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.52 E-value=2.3e-14 Score=138.05 Aligned_cols=108 Identities=27% Similarity=0.271 Sum_probs=79.6
Q ss_pred cccccCCCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHHHHHHHHHH
Q 040558 85 DVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFI 164 (367)
Q Consensus 85 ~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 164 (367)
.|.+....+....|+++.+. ...+|||+|||++|+++++. +.|..++|||||||+|||++||+
T Consensus 189 ~V~~V~~~~~~~~~~~~~~~----~~~~~dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll 251 (297)
T cd07480 189 GVAAVGALGRTGNFSAVANF----SNGEVDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALW 251 (297)
T ss_pred EEEEECCCCCCCCccccCCC----CCCceEEEeCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHH
Confidence 44555555556666555542 24588999999999998875 68999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCCcccCccChh
Q 040558 165 RSVHRRWSSSIIKSALMTTATVYDNTGKPLKNNAGSTASPHETGVGEISPL 215 (367)
Q Consensus 165 ~~~~p~~s~~~ik~~L~~tA~~~~~~g~~~~~~~~~~~~~~~~G~G~in~~ 215 (367)
+|++|.++..+++.+|+......-. ..........++|+|++++.
T Consensus 252 ~~~~p~~~~~~~~~~l~~~l~~~~~------~~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 252 AEALPKAGGRALAALLQARLTAART------TQFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHhCcccCHHHHHHHHHHHHhhccc------CCCCCCCChhhcCCceeecC
Confidence 9999999998888888743322100 01123356678899998864
No 32
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.51 E-value=1.7e-14 Score=139.49 Aligned_cols=72 Identities=56% Similarity=0.795 Sum_probs=61.4
Q ss_pred cCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc
Q 040558 111 LKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTAT 185 (367)
Q Consensus 111 ~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~tA~ 185 (367)
+||||+|||++|+++++.... .........|..++|||||||+|||++|||+|++|.|+++|||++|++||+
T Consensus 236 ~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 799999999999999875311 111223378999999999999999999999999999999999999999985
No 33
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.50 E-value=2.9e-14 Score=133.97 Aligned_cols=90 Identities=19% Similarity=0.124 Sum_probs=67.4
Q ss_pred eecccccccccCCCCccc---cCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchH
Q 040558 79 TILPTVDVQRYKPAPVVA---YFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155 (367)
Q Consensus 79 ~i~~~~~v~~~~~~~~~a---~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 155 (367)
.....++|++.+..+..+ .||+++-.....+..||||+|||++|++ +. +.|..++|||||||
T Consensus 148 ~~~nvItVGA~d~~g~~~~~s~~sn~~~~~~~~~~~~~di~APG~~i~s--~~-------------~~~~~~sGTSmAaP 212 (247)
T cd07488 148 LAYNSIVVGSTDRNGDRFFASDVSNAGSEINSYGRRKVLIVAPGSNYNL--PD-------------GKDDFVSGTSFSAP 212 (247)
T ss_pred ccCCeEEEEEecCCCCcceecccccccCCCCCCCCceeEEEEeeeeEEC--CC-------------CceeeecccchHHH
Confidence 344567888888777654 5566543222367789999999999998 32 56889999999999
Q ss_pred HHHHHHHHHHhhCCCCCHH------HHHHHHhhc
Q 040558 156 HVTGAAAFIRSVHRRWSSS------IIKSALMTT 183 (367)
Q Consensus 156 ~VAG~aALl~~~~p~~s~~------~ik~~L~~t 183 (367)
||||++|||++++|.+.+. ++|.+|+.+
T Consensus 213 ~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 213 LVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred HHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 9999999999998776644 455555544
No 34
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.50 E-value=8.9e-14 Score=130.36 Aligned_cols=90 Identities=31% Similarity=0.351 Sum_probs=77.0
Q ss_pred ecccccccccCCCCccccC--CCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHHH
Q 040558 80 ILPTVDVQRYKPAPVVAYF--SSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHV 157 (367)
Q Consensus 80 i~~~~~v~~~~~~~~~a~f--Ss~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~V 157 (367)
....++|++.+..+....| |++|... -..+++|||.+|+++.+... ..|..++|||||||+|
T Consensus 176 ~~~vi~Vga~~~~~~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~v 239 (267)
T cd04848 176 EGGWIAVVAVDPNGTIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHV 239 (267)
T ss_pred cCCEEEEEEecCCCCcccccccccchhh-----hhheeecCcCceeecccCCC-----------CcccccceeEchHHHH
Confidence 3456788888888888888 9999753 23479999999999876311 6789999999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHhhccc
Q 040558 158 TGAAAFIRSVHRRWSSSIIKSALMTTAT 185 (367)
Q Consensus 158 AG~aALl~~~~p~~s~~~ik~~L~~tA~ 185 (367)
||++|||+|++|.+++++||++|++||+
T Consensus 240 aG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 240 SGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999985
No 35
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.49 E-value=3.8e-14 Score=130.55 Aligned_cols=85 Identities=26% Similarity=0.311 Sum_probs=69.3
Q ss_pred ceeecccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHH
Q 040558 77 TATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPH 156 (367)
Q Consensus 77 ~~~i~~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 156 (367)
.+.++..+.|.+.+..+..+.| ++ ++|+.|||.+|+++++. +.|..++|||||||+
T Consensus 138 Pa~~~~vi~V~~~~~~~~~~~~---~~--------~~~~~apg~~i~~~~~~-------------~~~~~~~GTS~Aap~ 193 (222)
T cd07492 138 PASFPNVIGVKSDTADDPKSFW---YI--------YVEFSADGVDIIAPAPH-------------GRYLTVSGNSFAAPH 193 (222)
T ss_pred CccCCceEEEEecCCCCCcccc---cC--------CceEEeCCCCeEeecCC-------------CCEEEeccHHHHHHH
Confidence 3555666677665544433332 33 45999999999998775 679999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHhhccc
Q 040558 157 VTGAAAFIRSVHRRWSSSIIKSALMTTAT 185 (367)
Q Consensus 157 VAG~aALl~~~~p~~s~~~ik~~L~~tA~ 185 (367)
|||++|||++++|.|+++|||++|+.||+
T Consensus 194 vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 194 VTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999985
No 36
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.48 E-value=4.4e-14 Score=135.06 Aligned_cols=99 Identities=25% Similarity=0.227 Sum_probs=76.3
Q ss_pred eeecccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCC--CCCCC-------CCCCCCCceEEeC
Q 040558 78 ATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKV--NAGSF-------PIGKKPAGYAIKS 148 (367)
Q Consensus 78 ~~i~~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~--~~~~~-------~~~~~~~~y~~~s 148 (367)
+..+..++|++.+..+.++.||++|... +|++|||+++........ ..... ......+.|..++
T Consensus 186 ~~~~~vi~Vga~~~~~~~~~~S~~g~~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (294)
T cd07482 186 ASLPNVITVSATDNNGNLSSFSNYGNSR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMY 258 (294)
T ss_pred cccCceEEEEeeCCCCCcCccccCCCCc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeec
Confidence 4556778899999999999999999753 499999999853221110 00000 0112346899999
Q ss_pred ccccchHHHHHHHHHHHhhCCCCCH-HHHHHHHhhc
Q 040558 149 GTSMACPHVTGAAAFIRSVHRRWSS-SIIKSALMTT 183 (367)
Q Consensus 149 GTSmAaP~VAG~aALl~~~~p~~s~-~~ik~~L~~t 183 (367)
|||||||+|||++|||+|++|.+++ .|||++|++|
T Consensus 259 GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 259 GTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred chhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 9999999999999999999999999 9999999986
No 37
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=6.8e-13 Score=138.67 Aligned_cols=102 Identities=28% Similarity=0.339 Sum_probs=84.3
Q ss_pred CccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHHHHHHHHHHHh----hC
Q 040558 93 PVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRS----VH 168 (367)
Q Consensus 93 ~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~ 168 (367)
.....||||||+. ++.+--.|+|||+-|-+- |... -..-..|.|||||+|+++|.+|||++ .+
T Consensus 452 ~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~t----------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~n 518 (1304)
T KOG1114|consen 452 SNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQYT----------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQN 518 (1304)
T ss_pred CCccccccCCCCc--CCCcceEEecCCccccCC-chhh----------hhhhhhhCCcccCCccccchHHHHHHHHHhcC
Confidence 4577899999997 888888999999988542 3211 03456899999999999999999866 46
Q ss_pred CCCCHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCCcccCccChhhhcC
Q 040558 169 RRWSSSIIKSALMTTATVYDNTGKPLKNNAGSTASPHETGVGEISPLKALN 219 (367)
Q Consensus 169 p~~s~~~ik~~L~~tA~~~~~~g~~~~~~~~~~~~~~~~G~G~in~~~A~~ 219 (367)
-.|+|..||.+|++||..++. ..+|.||.|++++.+|.+
T Consensus 519 i~ytpysVrrAlenTa~~l~~------------id~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 519 IPYTPYSVRRALENTATKLGD------------IDSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred CCCcHHHHHHHHHhcccccCc------------cchhccCcceeehhHHHH
Confidence 689999999999999998743 257899999999999987
No 38
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.7e-13 Score=132.50 Aligned_cols=143 Identities=27% Similarity=0.253 Sum_probs=100.9
Q ss_pred cHHHH--HHHHHcCceEEEEEecCCCCCCC------CCCcccceeecccccceeeEEeecccCCCceeecccccccccCC
Q 040558 20 RKIKK--LVAEDADAKGLILIDEDYEKHVP------FDSGIFPLSEVGSVAGFQIIHYINSTKNPTATILPTVDVQRYKP 91 (367)
Q Consensus 20 ~~~~K--~~a~~aGa~gvi~~n~~~~~~~~------~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~v~~~~~ 91 (367)
.+..| ...++++.++-+....- ++... .+...--.++.....|+.-.+..+.. ++.-...++|++.+.
T Consensus 302 E~~~k~h~~~k~~~~k~sv~NlSl-Gg~~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~S---Pass~~aITVGAst~ 377 (501)
T KOG1153|consen 302 EFVVKHHEKKKKKEGKKSVANLSL-GGFRSAALNMAVNAASERGIHFAVAAGNEHEDACNSS---PASSKKAITVGASTK 377 (501)
T ss_pred HHHHHHhhhhhcccCCCeEEEEec-CCcccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccC---cccccccEEeccccc
Confidence 34444 23455666666655544 33221 11111123444455555555544432 466677889999999
Q ss_pred CCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHHHHHHHHHHHhhCCC-
Q 040558 92 APVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHRR- 170 (367)
Q Consensus 92 ~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~- 170 (367)
.+++|.|||||+.+ ||.|||++|+|+|.+.. ..-.+.||||||+|||||++|..++.+|.
T Consensus 378 ~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~-----------~at~ilSGTSMasPhvaG~aAy~ls~~~~~ 438 (501)
T KOG1153|consen 378 NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN-----------NATAILSGTSMASPHVAGLAAYFLSLGPLP 438 (501)
T ss_pred ccchhhhcCcccee--------eeecCchhhhhhhhcCc-----------cchheeecccccCcchhhhHHHhhhcCCCC
Confidence 99999999999998 99999999999998743 46678999999999999999999999883
Q ss_pred --------CCHHHHHHHHhhccc
Q 040558 171 --------WSSSIIKSALMTTAT 185 (367)
Q Consensus 171 --------~s~~~ik~~L~~tA~ 185 (367)
.++.++|..+..-..
T Consensus 439 ~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 439 DSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hHHhhhccCChHHhhhhhhcccc
Confidence 378888877765554
No 39
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.39 E-value=8.3e-13 Score=124.12 Aligned_cols=72 Identities=18% Similarity=0.117 Sum_probs=61.9
Q ss_pred eeecccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHHH
Q 040558 78 ATILPTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHV 157 (367)
Q Consensus 78 ~~i~~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~V 157 (367)
+..+..++|++.+..+.++.||++|+.. |++|||++|+++++.. ..+.|..++|||||||||
T Consensus 158 a~~~~Vi~VgA~~~~g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~----------~~~~~~~~sGTS~Atp~v 219 (247)
T cd07491 158 AARDRIFRIGAADEDGGADAPVGDEDRV--------DYILPGENVEARDRPP----------LSNSFVTHTGSSVATALA 219 (247)
T ss_pred ccCCCeEEEEeeCCCCCCccccCCCCcc--------eEEeCCCceecCCcCC----------CCCCeeeeccHHHHHHHH
Confidence 4566778899988889999999999876 9999999999887521 116799999999999999
Q ss_pred HHHHHHHHhh
Q 040558 158 TGAAAFIRSV 167 (367)
Q Consensus 158 AG~aALl~~~ 167 (367)
||++||+++.
T Consensus 220 aGvaAL~l~~ 229 (247)
T cd07491 220 AGLAALILYC 229 (247)
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.28 E-value=2.1e-11 Score=111.36 Aligned_cols=88 Identities=34% Similarity=0.413 Sum_probs=72.1
Q ss_pred ceeecccccccccCCCCccc-cCCCCCCCCCCCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchH
Q 040558 77 TATILPTVDVQRYKPAPVVA-YFSSRGPGELTENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACP 155 (367)
Q Consensus 77 ~~~i~~~~~v~~~~~~~~~a-~fSs~Gp~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 155 (367)
.+..+..++|++.+..+... .++++|+ |||+.|||.++...... ....+..++|||||||
T Consensus 153 p~~~~~vi~Vga~~~~~~~~~~~~~~~~--------~~~~~apg~~~~~~~~~-----------~~~~~~~~~GTS~Aap 213 (241)
T cd00306 153 PAASPNVIAVGAVDRDGTPASPSSNGGA--------GVDIAAPGGDILSSPTT-----------GGGGYATLSGTSMAAP 213 (241)
T ss_pred CccCCceEEEEecCcCCCccCCcCCCCC--------CceEEeCcCCccCcccC-----------CCCCeEeeccHHHHHH
Confidence 34566777888887777776 7777775 45999999999875111 1268999999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHhhc
Q 040558 156 HVTGAAAFIRSVHRRWSSSIIKSALMTT 183 (367)
Q Consensus 156 ~VAG~aALl~~~~p~~s~~~ik~~L~~t 183 (367)
+|||++||+++++|.+++.++|++|+++
T Consensus 214 ~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 214 IVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 9999999999999999999999999875
No 41
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.3e-12 Score=127.87 Aligned_cols=115 Identities=27% Similarity=0.351 Sum_probs=95.4
Q ss_pred cccccccccCCCCccccCCCCCCCCC----CCCCcCCceeecCccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHH
Q 040558 81 LPTVDVQRYKPAPVVAYFSSRGPGEL----TENILKPDVTAPGVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPH 156 (367)
Q Consensus 81 ~~~~~v~~~~~~~~~a~fSs~Gp~~~----~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 156 (367)
...+-|++.+-.+.+|.|||||=+.. ..+++||||++.|.+|...-.. .+-..+||||.|+|+
T Consensus 344 sDViGVGGIdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr~LSGTSVaSPV 410 (1033)
T KOG4266|consen 344 SDVIGVGGIDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCRSLSGTSVASPV 410 (1033)
T ss_pred cceeeeccccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccchhccCCcccchh
Confidence 34456788899999999999996543 3688999999999999866443 567889999999999
Q ss_pred HHHHHHHHHh----hCCCCCHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCCcccCccChhhhcCc
Q 040558 157 VTGAAAFIRS----VHRRWSSSIIKSALMTTATVYDNTGKPLKNNAGSTASPHETGVGEISPLKALNP 220 (367)
Q Consensus 157 VAG~aALl~~----~~p~~s~~~ik~~L~~tA~~~~~~g~~~~~~~~~~~~~~~~G~G~in~~~A~~~ 220 (367)
|||+++||.+ +.--++|+.+|++|...|..+.. ..-|.||+|++|+.++.+-
T Consensus 411 VAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg------------~NMfEQGaGkldLL~syqi 466 (1033)
T KOG4266|consen 411 VAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPG------------PNMFEQGAGKLDLLESYQI 466 (1033)
T ss_pred hhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCC------------CchhhccCcchhHHHHHHH
Confidence 9999999977 33457999999999999998743 2457899999999999873
No 42
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.23 E-value=4.3e-12 Score=106.69 Aligned_cols=75 Identities=36% Similarity=0.554 Sum_probs=64.1
Q ss_pred CCCceeEEEEEeCCCCCc-cHHHH-HHHHHcCceEEEEEecCCCCCCC--CCCcccceeecccccceeeEEeecccCCCc
Q 040558 2 KKVAGKIIVCVDDDPTVP-RKIKK-LVAEDADAKGLILIDEDYEKHVP--FDSGIFPLSEVGSVAGFQIIHYINSTKNPT 77 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~-~~~~K-~~a~~aGa~gvi~~n~~~~~~~~--~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 77 (367)
++++||||||+|+ .| .+.+| .+++++||+|+|++++. .+... .....+|++.|+.++|..|++|++++.+++
T Consensus 48 ~~v~GkIVlc~~~---~~~~~~~k~~~~~~~GA~gvI~~~~~-~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~ 123 (126)
T cd02120 48 SKVKGKIVLCDRG---GNTSRVAKGDAVKAAGGAGMILANDP-TDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPT 123 (126)
T ss_pred hhccccEEEEeCC---CCccHHHHHHHHHHcCCcEEEEEecC-CCCceecccccccceEEECHHHHHHHHHHHHcCCCcc
Confidence 5799999999999 79 99999 99999999999999987 44332 123679999999999999999999988776
Q ss_pred eee
Q 040558 78 ATI 80 (367)
Q Consensus 78 ~~i 80 (367)
+++
T Consensus 124 ~~i 126 (126)
T cd02120 124 ATI 126 (126)
T ss_pred eeC
Confidence 654
No 43
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.18 E-value=9.6e-12 Score=100.16 Aligned_cols=65 Identities=25% Similarity=0.262 Sum_probs=52.9
Q ss_pred CCCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCCCCC------CCCCcccceeecccccceeeEEee
Q 040558 2 KKVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYEKHV------PFDSGIFPLSEVGSVAGFQIIHYI 70 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~~~~------~~~~~~~p~~~i~~~~g~~l~~~~ 70 (367)
.+++||||||+|| .|+|.+| .+|+++||+|+||+|.. .... ......+|+++|++++|++|++||
T Consensus 30 ~~~~gkIvlv~rg---~~~~~~k~~~a~~~GA~gvIi~~~~-~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 30 SDVKGKIVLVERG---SCSFDDKVRNAQKAGAKGVIIYNPP-PNNGSMIDSEDPDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp STCTTSEEEEEST---SSCHHHHHHHHHHTTESEEEEE-TS-CSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHHHH
T ss_pred ccccceEEEEecC---CCCHHHHHHHHHHcCCEEEEEEeCC-ccccCcccccCCCCcEEEEEEeCHHHHhhhhccC
Confidence 5799999999999 9999999 99999999999999922 1111 134678999999999999998774
No 44
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.12 E-value=3.7e-11 Score=100.89 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=61.6
Q ss_pred CCCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCCCC-CC-----C-CCcccceeecccccceeeEEeeccc
Q 040558 2 KKVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYEKH-VP-----F-DSGIFPLSEVGSVAGFQIIHYINST 73 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~~~-~~-----~-~~~~~p~~~i~~~~g~~l~~~~~~~ 73 (367)
.+++||||||+|| .|.|.+| .+|+++||+|+|++|+. ... .. . ....+|+++|++++|++|++++.++
T Consensus 40 ~~~~GkIvLv~rg---~c~f~~K~~~A~~aGA~avIi~n~~-~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l~~~l~~g 115 (122)
T cd04816 40 LDVKGAIVLVDRG---GCPFADKQKVAAARGAVAVIVVNNS-DGGGTAGTLGAPNIDLKVPVGVITKAAGAALRRRLGAG 115 (122)
T ss_pred CCcCCeEEEEECC---CCCHHHHHHHHHHCCCcEEEEEeCC-CCccccccccCCCCCCeeeEEEEcHHHHHHHHHHHcCC
Confidence 3689999999999 8999999 99999999999999987 432 11 1 2356899999999999999999887
Q ss_pred CCCcee
Q 040558 74 KNPTAT 79 (367)
Q Consensus 74 ~~~~~~ 79 (367)
.+.+++
T Consensus 116 ~~v~~~ 121 (122)
T cd04816 116 ETLELD 121 (122)
T ss_pred CEEEEe
Confidence 665443
No 45
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.11 E-value=4.5e-11 Score=99.71 Aligned_cols=74 Identities=20% Similarity=0.153 Sum_probs=61.7
Q ss_pred CCCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCCCCCC------CCCcccceeecccccceeeEEeecccC
Q 040558 2 KKVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYEKHVP------FDSGIFPLSEVGSVAGFQIIHYINSTK 74 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~~~~~------~~~~~~p~~~i~~~~g~~l~~~~~~~~ 74 (367)
.+++||||||+|+ .|.|.+| .+++++||+|+||+|+. ..... .....+|+++|++++|..|++|++.+.
T Consensus 37 ~~v~GkIvL~~rg---~c~f~~k~~~a~~aGA~gvIi~~~~-~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~~l~~g~ 112 (118)
T cd04818 37 AAFAGKIALIDRG---TCNFTVKVLNAQNAGAIAVIVANNV-AGGAPITMGGDDPDITIPAVMISQADGDALKAALAAGG 112 (118)
T ss_pred CCCCCEEEEEECC---CCCHHHHHHHHHHCCCeEEEEEECC-CCCcceeccCCCCCCEEeEEEecHHHHHHHHHHHhcCC
Confidence 4699999999999 8999999 99999999999999987 43211 123579999999999999999999877
Q ss_pred CCcee
Q 040558 75 NPTAT 79 (367)
Q Consensus 75 ~~~~~ 79 (367)
+.+++
T Consensus 113 ~v~v~ 117 (118)
T cd04818 113 TVTVT 117 (118)
T ss_pred cEEEe
Confidence 65443
No 46
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.10 E-value=5.7e-11 Score=99.73 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=62.1
Q ss_pred CCCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCCCC-CC-----CCCcccceeecccccceeeEEeecccC
Q 040558 2 KKVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYEKH-VP-----FDSGIFPLSEVGSVAGFQIIHYINSTK 74 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~~~-~~-----~~~~~~p~~~i~~~~g~~l~~~~~~~~ 74 (367)
.+++|||||++|| .|.|.+| .+|+++||+|+|+||+. ..+ .. .+...+|++.|+.++|+.|++.++++.
T Consensus 41 ~~~~gkIvlv~rg---~c~f~~K~~~A~~aGA~~vIv~n~~-~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~~l~~g~ 116 (122)
T cd02130 41 ASVAGNIALIERG---ECPFGDKSALAGAAGAAAAIIYNNV-PAGGLSGTLGEPSGPYVPTVGISQEDGKALVAALANGG 116 (122)
T ss_pred cCCCCEEEEEECC---CCCHHHHHHHHHHCCCcEEEEEECC-CCcccccccCCCCCCEeeEEEecHHHHHHHHHHHhcCC
Confidence 4799999999999 8999999 99999999999999977 322 11 124569999999999999999999887
Q ss_pred CCcee
Q 040558 75 NPTAT 79 (367)
Q Consensus 75 ~~~~~ 79 (367)
+.+++
T Consensus 117 ~v~~~ 121 (122)
T cd02130 117 EVSAN 121 (122)
T ss_pred cEEEe
Confidence 66554
No 47
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.10 E-value=6.5e-11 Score=98.90 Aligned_cols=75 Identities=20% Similarity=0.221 Sum_probs=63.0
Q ss_pred CCCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCCCC----CC------CCCcccceeecccccceeeEEee
Q 040558 2 KKVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYEKH----VP------FDSGIFPLSEVGSVAGFQIIHYI 70 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~~~----~~------~~~~~~p~~~i~~~~g~~l~~~~ 70 (367)
.+++|||+|++|| .|+|.+| .+|+++||+++|++|+. ... +. .....+|+++|+.++|+.|++.+
T Consensus 31 ~~~~g~I~Lv~RG---~C~F~~K~~~Aq~aGA~avII~n~~-~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~~L~~~l 106 (118)
T cd02127 31 HDINGNIALIERG---GCSFLTKAINAQKAGALAVIITDVN-NDSDEYYVEMIQDDSSRRADIPAAFLLGKNGYMIRKTL 106 (118)
T ss_pred cccCCeEEEEECC---CCCHHHHHHHHHHCCCcEEEEEECC-CCccccceEecCCCCCCCceEEEEEecHHHHHHHHHHH
Confidence 4689999999999 9999999 99999999999999986 431 10 12357899999999999999999
Q ss_pred cccCCCceee
Q 040558 71 NSTKNPTATI 80 (367)
Q Consensus 71 ~~~~~~~~~i 80 (367)
..+..+++.|
T Consensus 107 ~~g~~~~~~~ 116 (118)
T cd02127 107 ERLGLPYAII 116 (118)
T ss_pred HcCCceEEee
Confidence 9887776655
No 48
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.08 E-value=9.5e-11 Score=97.96 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=60.9
Q ss_pred CCCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCCCC-CC---C----CCcccceeecccccceeeEEeecc
Q 040558 2 KKVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYEKH-VP---F----DSGIFPLSEVGSVAGFQIIHYINS 72 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~~~-~~---~----~~~~~p~~~i~~~~g~~l~~~~~~ 72 (367)
.+++||||||+|+ .|.|.+| .+|+++||+|+||+++. ... .. . ....+|++.|+.++|.+|++|+.+
T Consensus 43 ~~~~GkIvl~~~g---~~~~~~k~~~a~~~GA~gvii~~~~-~~~~~~~~~~~~~~~~~~iP~~~is~~~g~~l~~~~~~ 118 (126)
T cd00538 43 ADVKGKIVLVRRG---GCSFSEKVKNAQKAGAKAVIIYNNG-DDPGPQMGSVGLESTDPSIPTVGISYADGEALLSLLEA 118 (126)
T ss_pred CCccceEEEEECC---CcCHHHHHHHHHHCCCEEEEEEECC-CCcccccccccCCCCCCcEeEEEeCHHHHHHHHHHHhc
Confidence 4799999999999 8999999 99999999999999987 432 11 1 345799999999999999999988
Q ss_pred cCCCce
Q 040558 73 TKNPTA 78 (367)
Q Consensus 73 ~~~~~~ 78 (367)
+.+.++
T Consensus 119 ~~~v~~ 124 (126)
T cd00538 119 GKTVTV 124 (126)
T ss_pred CCceEE
Confidence 665443
No 49
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.07 E-value=7.4e-11 Score=99.72 Aligned_cols=73 Identities=25% Similarity=0.243 Sum_probs=60.5
Q ss_pred CCCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCCCC------C----C-C---CCcccceeecccccceee
Q 040558 2 KKVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYEKH------V----P-F---DSGIFPLSEVGSVAGFQI 66 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~~~------~----~-~---~~~~~p~~~i~~~~g~~l 66 (367)
.+++|||+|++|| .|+|.+| .+|+++||+|+|++|+. ++. . . . +...||+++|+.++|++|
T Consensus 37 ~~~~gkIaLv~RG---~C~f~~K~~~Aq~aGA~avII~n~~-~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~dG~~L 112 (126)
T cd02126 37 EEVKGKIAIMERG---DCMFVEKARRVQKAGAIGGIVIDNN-EGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFSKEGSKL 112 (126)
T ss_pred cccCceEEEEECC---CCcHHHHHHHHHHCCCcEEEEEECC-CCccccccceeEeecCCCCCCCCeEEEEEEEHHHHHHH
Confidence 4689999999999 9999999 99999999999999876 431 1 0 1 245789999999999999
Q ss_pred EEeecccCCCce
Q 040558 67 IHYINSTKNPTA 78 (367)
Q Consensus 67 ~~~~~~~~~~~~ 78 (367)
+++++.+...++
T Consensus 113 ~~~l~~~~~~~~ 124 (126)
T cd02126 113 LAAIKEHQNVEV 124 (126)
T ss_pred HHHHHhCCceEE
Confidence 999987665543
No 50
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.07 E-value=9.6e-11 Score=100.51 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=62.1
Q ss_pred CCCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCC-CC--C--C-CCCcccceeecccccceeeEEeecccC
Q 040558 2 KKVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYE-KH--V--P-FDSGIFPLSEVGSVAGFQIIHYINSTK 74 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~-~~--~--~-~~~~~~p~~~i~~~~g~~l~~~~~~~~ 74 (367)
.+++|||||++|| .|+|.+| .+|+++||+++||||+. . .. + . .....+|+++|+.++|++|+++++++.
T Consensus 57 ~~~~g~IaLV~RG---~C~F~~K~~nA~~aGA~aVIIyn~~-~~~~~~~~m~~~~~~~ip~v~Is~~~G~~l~~~l~~G~ 132 (138)
T cd02122 57 PNGEPWIALIQRG---NCTFEEKIKLAAERNASAVVIYNNP-GTGNETVKMSHPGTGDIVAIMITNPKGMEILELLERGI 132 (138)
T ss_pred ccCCCeEEEEECC---CCCHHHHHHHHHHCCCcEEEEEECC-CCCCceeeccCCCCCcceEEEEcHHHHHHHHHHHHcCC
Confidence 4689999999999 8999999 99999999999999988 4 21 1 1 123468999999999999999999887
Q ss_pred CCcee
Q 040558 75 NPTAT 79 (367)
Q Consensus 75 ~~~~~ 79 (367)
+.+++
T Consensus 133 ~Vtv~ 137 (138)
T cd02122 133 SVTMV 137 (138)
T ss_pred cEEEe
Confidence 66554
No 51
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.04 E-value=1.3e-10 Score=99.97 Aligned_cols=73 Identities=19% Similarity=0.214 Sum_probs=61.1
Q ss_pred CCCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCCCCCC-----C---CCcccceeecccccceeeEEeecc
Q 040558 2 KKVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYEKHVP-----F---DSGIFPLSEVGSVAGFQIIHYINS 72 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~~~~~-----~---~~~~~p~~~i~~~~g~~l~~~~~~ 72 (367)
.+++|||||++|| .|+|.+| .+|+++||+++|+||+. +.... . ....||+++|++++|+.|++++.+
T Consensus 56 ~~~~g~IvLV~RG---~C~F~~K~~nA~~aGA~avIv~n~~-~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~ 131 (139)
T cd02132 56 SKLSGSIALVERG---ECAFTEKAKIAEAGGASALLIINDQ-EELYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQ 131 (139)
T ss_pred cccCCeEEEEECC---CCCHHHHHHHHHHcCCcEEEEEECC-CcccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHc
Confidence 4789999999999 9999999 99999999999999987 43211 0 135789999999999999999988
Q ss_pred cCCCce
Q 040558 73 TKNPTA 78 (367)
Q Consensus 73 ~~~~~~ 78 (367)
+...++
T Consensus 132 g~~Vtv 137 (139)
T cd02132 132 GKKVEV 137 (139)
T ss_pred CCcEEE
Confidence 766443
No 52
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.04 E-value=1.6e-10 Score=96.46 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=56.6
Q ss_pred CCCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCCCCCC------CCCcccceeecccccceeeEEeecc
Q 040558 2 KKVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYEKHVP------FDSGIFPLSEVGSVAGFQIIHYINS 72 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~~~~~------~~~~~~p~~~i~~~~g~~l~~~~~~ 72 (367)
.+++|||+|++|| .|+|.+| .+|+++||+|+||+|+. ..... .....||+++|+.++|+.|++.+..
T Consensus 41 ~~l~gkIaLV~RG---~CsF~~K~~~Aq~aGA~aVII~nn~-~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 41 GGLKGKAVVVMRG---NCTFYEKARLAQSLGAEGLLIVSRE-RLVPPSGNRSEYEKIDIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred cccCCeEEEEECC---CcCHHHHHHHHHHCCCCEEEEEECC-CCCCCCCCCCCCcCCcccEEEEeHHHHHHHHHHhcc
Confidence 4789999999999 9999999 99999999999999988 43111 1346789999999999999887653
No 53
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.01 E-value=2.1e-10 Score=98.27 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=56.6
Q ss_pred CCCceeEEEEEeCCCCCcc-----HHHH-HHHHHcCceEEEEEecCCCCC-CC---CC---CcccceeecccccceeeEE
Q 040558 2 KKVAGKIIVCVDDDPTVPR-----KIKK-LVAEDADAKGLILIDEDYEKH-VP---FD---SGIFPLSEVGSVAGFQIIH 68 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~~-----~~~K-~~a~~aGa~gvi~~n~~~~~~-~~---~~---~~~~p~~~i~~~~g~~l~~ 68 (367)
.+++|||+|++|| .|+ |.+| ++|+++||+|+||||+....+ +. .+ ...+|++.|++++|++|++
T Consensus 53 ~d~~GkIaLI~RG---~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 53 GGMAGKICLIERG---GNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred CCcCccEEEEECC---CCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 4799999999999 899 9999 999999999999999861122 11 11 4579999999999999988
Q ss_pred eecc
Q 040558 69 YINS 72 (367)
Q Consensus 69 ~~~~ 72 (367)
.+..
T Consensus 130 ~l~~ 133 (139)
T cd04817 130 ALGQ 133 (139)
T ss_pred HhcC
Confidence 7754
No 54
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.93 E-value=6.4e-10 Score=94.11 Aligned_cols=72 Identities=13% Similarity=0.066 Sum_probs=59.7
Q ss_pred CceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCCCCC-C------------CCCcccceeecccccceeeEEe
Q 040558 4 VAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYEKHV-P------------FDSGIFPLSEVGSVAGFQIIHY 69 (367)
Q Consensus 4 V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~~~~-~------------~~~~~~p~~~i~~~~g~~l~~~ 69 (367)
..+||||++|| +|+|.+| .+|+++||+++|++|+. ++.. . .+...+|+++|+.++|+.|++.
T Consensus 41 ~~~~IvLv~RG---~C~F~~K~~~Aq~aGA~avII~n~~-~~~~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~ 116 (127)
T cd02125 41 RRPVILLLDRG---GCFFTLKAWNAQQAGAAAVLVADNV-DEPLLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKA 116 (127)
T ss_pred CCceEEEEECC---CcCHHHHHHHHHHCCCcEEEEEECC-CCccccccCcccccccccCCCceEeEEEECHHHHHHHHHH
Confidence 67899999999 8999999 99999999999999987 4421 1 1123589999999999999999
Q ss_pred ecccCCCcee
Q 040558 70 INSTKNPTAT 79 (367)
Q Consensus 70 ~~~~~~~~~~ 79 (367)
+.++...+++
T Consensus 117 l~~g~~V~v~ 126 (127)
T cd02125 117 ISNGEMVVIK 126 (127)
T ss_pred HhcCCeEEEe
Confidence 9887765443
No 55
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.92 E-value=8.7e-10 Score=91.96 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=56.4
Q ss_pred CCCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCCCC-C---C----CCCcccceeecccccceeeEEeecc
Q 040558 2 KKVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYEKH-V---P----FDSGIFPLSEVGSVAGFQIIHYINS 72 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~~~-~---~----~~~~~~p~~~i~~~~g~~l~~~~~~ 72 (367)
.+++|||||++|| .|+|.+| .+|+++||+++|++|+. .+. . . .....+|+++|++++|++|++++..
T Consensus 36 ~~l~gkIvLV~RG---~CsF~~K~~nAq~aGA~avII~n~~-~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~L~~l~~~ 111 (117)
T cd04813 36 AEIDGKVALVLRG---GCGFLDKVMWAQRRGAKAVIVGDDE-PGRGLITMFSNGDTDNVTIPAMFTSRTSYHLLSSLLPK 111 (117)
T ss_pred CCcCCeEEEEECC---CCCHHHHHHHHHHCCCcEEEEEECC-CcccceecccCCCCCCcEEEEEEEcHHHHHHHHHhccc
Confidence 4789999999999 8999999 99999999999999987 431 1 1 1235789999999999999887654
No 56
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.92 E-value=6.9e-10 Score=94.16 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=57.7
Q ss_pred CCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCCCCCC---CCCcccceeecccccceeeEEeecccCCCce
Q 040558 3 KVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYEKHVP---FDSGIFPLSEVGSVAGFQIIHYINSTKNPTA 78 (367)
Q Consensus 3 ~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~~~~~---~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 78 (367)
+++|||+|++|| .|.|.+| .+|+++||+++||||+. +.... .+...+|.+.+ .++|++|++.++.+...++
T Consensus 53 ~~~g~IaLv~rg---~c~f~~K~~nA~~aGA~aviiyn~~-~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~l~~G~~vtv 127 (129)
T cd02124 53 DLSGYIVLVRRG---TCTFATKAANAAAKGAKYVLIYNNG-SGPTDQVGSDADSIIAAVT-PEDGEAWIDALAAGSNVTV 127 (129)
T ss_pred cccCeEEEEECC---CCCHHHHHHHHHHcCCcEEEEEECC-CCcccccCCCCcceeeEEe-HHHHHHHHHHHhcCCeEEE
Confidence 689999999999 8999999 99999999999999987 54332 12334566656 9999999999887765544
Q ss_pred e
Q 040558 79 T 79 (367)
Q Consensus 79 ~ 79 (367)
+
T Consensus 128 ~ 128 (129)
T cd02124 128 D 128 (129)
T ss_pred e
Confidence 3
No 57
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.85 E-value=1.9e-09 Score=94.10 Aligned_cols=70 Identities=17% Similarity=0.111 Sum_probs=59.3
Q ss_pred CCCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCCCCCC------C--CCcccceeecccccceeeEEeecc
Q 040558 2 KKVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYEKHVP------F--DSGIFPLSEVGSVAGFQIIHYINS 72 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~~~~~------~--~~~~~p~~~i~~~~g~~l~~~~~~ 72 (367)
.++.|||||++|| +|+|.+| .+|+++||+|+|++|+. .+... . ....+|+++|+.++|+.|++++..
T Consensus 64 ~~~~g~IvLV~RG---~CtF~~Kv~nAq~aGA~avII~n~~-~~~~~~m~~~~~~~~~v~IP~v~Is~~dg~~L~~~l~~ 139 (153)
T cd02123 64 NASGSFIVLIRRG---NCSFETKVRNAQRAGYKAAIVYNDE-SNDLISMSGNDQEIKGIDIPSVFVGKSTGEILKKYASY 139 (153)
T ss_pred ccCCCeEEEEECC---CCCHHHHHHHHHHCCCCEEEEEECC-CCcceeccCCCCCCcCCEEEEEEeeHHHHHHHHHHHhc
Confidence 5789999999999 9999999 99999999999999987 44321 1 145799999999999999998876
Q ss_pred cCC
Q 040558 73 TKN 75 (367)
Q Consensus 73 ~~~ 75 (367)
...
T Consensus 140 ~~~ 142 (153)
T cd02123 140 EKG 142 (153)
T ss_pred CCc
Confidence 544
No 58
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.77 E-value=6.3e-09 Score=88.04 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=57.7
Q ss_pred CCCceeEEEEEeCCCCCc--cHHHH-HHHHHcCceEEEEEecCCCCCCC---------CCCcccceeecccccceeeEEe
Q 040558 2 KKVAGKIIVCVDDDPTVP--RKIKK-LVAEDADAKGLILIDEDYEKHVP---------FDSGIFPLSEVGSVAGFQIIHY 69 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~--~~~~K-~~a~~aGa~gvi~~n~~~~~~~~---------~~~~~~p~~~i~~~~g~~l~~~ 69 (367)
.+++|||||++++ .| .+.+| ++|+++||+|+|++|+. .+.+. .....+|++.|+.+||++|++.
T Consensus 41 ~~v~GkIvlv~~g---~~~~~~~~k~~~A~~~GA~avi~~~~~-~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~ 116 (127)
T cd04819 41 LDLEGKIAVVKRD---DPDVDRKEKYAKAVAAGAAAFVVVNTV-PGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARV 116 (127)
T ss_pred CCCCCeEEEEEcC---CCchhHHHHHHHHHHCCCEEEEEEeCC-CCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHH
Confidence 4799999999999 88 88999 99999999999999876 44321 1235799999999999999988
Q ss_pred ecccC
Q 040558 70 INSTK 74 (367)
Q Consensus 70 ~~~~~ 74 (367)
++.+.
T Consensus 117 l~~g~ 121 (127)
T cd04819 117 AERND 121 (127)
T ss_pred HhcCC
Confidence 87644
No 59
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.70 E-value=3.6e-07 Score=75.43 Aligned_cols=87 Identities=17% Similarity=0.260 Sum_probs=60.2
Q ss_pred EEEeecCCCcceEEEEEEEEecCCCceeEEEEEeC--------CCCe-----------EEEEccceeEEecCceEEEEEE
Q 040558 273 ISISKLDRHRAAETVKRTVTNVGLQNVTYISRVNA--------PSGL-----------IVKVLPQKLVFAEGVKRMSFSV 333 (367)
Q Consensus 273 i~~~~~~~~~~~~t~~rtvtNvg~~~~ty~~~v~~--------p~g~-----------~v~v~P~~l~~~~~g~~~~~~v 333 (367)
|++...... .+++.+++|.|+...+|+++... ..|. .+...|.++++ ++|++++++|
T Consensus 1 i~L~d~~~~---~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~v 76 (112)
T PF06280_consen 1 ISLKDTGNK---FSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTV 76 (112)
T ss_dssp EEEEEE-SE---EEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEE
T ss_pred CCccccCCc---eEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEE
Confidence 345555444 78899999999999999998772 0111 56778888888 7899999999
Q ss_pred EEEeee----cCCceEEEEEEEECC-ce-EEEEEEE
Q 040558 334 SFYGKE----AAGGYNFGSVTWSDN-RH-SVQMMFA 363 (367)
Q Consensus 334 t~~~~~----~~~~~~~G~l~~~~~-~~-~vr~P~~ 363 (367)
+|+..+ ....+++|+|.+++. .+ .+++||+
T Consensus 77 ti~~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 77 TITPPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp EEE--GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred EEEehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 999844 346789999999976 44 9999996
No 60
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.8e-07 Score=91.88 Aligned_cols=87 Identities=36% Similarity=0.513 Sum_probs=71.9
Q ss_pred ccccccccCCCCccccCCCCCCCCCCCCCcCCceeecCccEEE-----eecCCCCCCCCCCCCCCCceEEeCccccchHH
Q 040558 82 PTVDVQRYKPAPVVAYFSSRGPGELTENILKPDVTAPGVAILA-----AIVPKVNAGSFPIGKKPAGYAIKSGTSMACPH 156 (367)
Q Consensus 82 ~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDi~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 156 (367)
...++++.+..+.++.||++|... ..+++|||.+|.+ .+++.. ..|..++||||++||
T Consensus 305 ~~i~v~a~~~~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~ 367 (508)
T COG1404 305 NVIAVGALDLSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPH 367 (508)
T ss_pred ceEEEecCCCCCccccccccCCCC------CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccH
Confidence 445666666678999999999851 2299999999987 444310 249999999999999
Q ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHhhccc
Q 040558 157 VTGAAAFIRSVHR-RWSSSIIKSALMTTAT 185 (367)
Q Consensus 157 VAG~aALl~~~~p-~~s~~~ik~~L~~tA~ 185 (367)
|+|++||+++.+| .+++.+++..+..++.
T Consensus 368 v~g~aal~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
T COG1404 368 VSGVAALVLSANPNELTPAQVRNLIVTTAG 397 (508)
T ss_pred HHHHHHHHHccCcccCCHHHHHHHHhhccc
Confidence 9999999999999 8999999999888877
No 61
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.28 E-value=4.1e-07 Score=81.27 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=34.7
Q ss_pred CCCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecC
Q 040558 2 KKVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDED 41 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~ 41 (367)
.+++||||||++| .|.+.+| ++|+++||+|+|||++.
T Consensus 52 v~v~GkIvLvr~G---~~~~~~Kv~~A~~~GA~gvIiy~Dp 89 (183)
T cd02128 52 VSVNGSVVLVRAG---KISFAEKVANAEKLGAVGVLIYPDP 89 (183)
T ss_pred CCCCCeEEEEECC---CCCHHHHHHHHHHCCCEEEEEecCH
Confidence 3799999999999 8999999 99999999999999874
No 62
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=98.27 E-value=5.6e-07 Score=76.86 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=55.7
Q ss_pred CCCceeEEEEEeCCCCCc------cHHHH--------HHHHHcCceEEEEEecCCCC----C---C-CC--CCcccceee
Q 040558 2 KKVAGKIIVCVDDDPTVP------RKIKK--------LVAEDADAKGLILIDEDYEK----H---V-PF--DSGIFPLSE 57 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~------~~~~K--------~~a~~aGa~gvi~~n~~~~~----~---~-~~--~~~~~p~~~ 57 (367)
.+|+|||||++++ .| .|..| +.|+++||.|+|++|.. .. . . .. ....+|++.
T Consensus 36 ~~v~GKIvlv~~~---~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~-~~~~~~~~~G~~~~~~~~~~IP~v~ 111 (134)
T cd04815 36 GAVKGKIVFFNQP---MVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIG-TDSHRSPHTGMMSYDDGVPKIPAAA 111 (134)
T ss_pred hhcCCeEEEecCC---ccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecC-cccCCCCcCCccccCCCCCCCCEEE
Confidence 4799999999998 89 77665 67899999999999854 22 1 1 11 235699999
Q ss_pred cccccceeeEEeecccCCCc
Q 040558 58 VGSVAGFQIIHYINSTKNPT 77 (367)
Q Consensus 58 i~~~~g~~l~~~~~~~~~~~ 77 (367)
|+.+||++|...++.+..+.
T Consensus 112 is~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 112 ISVEDADMLERLAARGKPIR 131 (134)
T ss_pred echhcHHHHHHHHhCCCCeE
Confidence 99999999988887765443
No 63
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=98.08 E-value=4e-05 Score=76.08 Aligned_cols=48 Identities=29% Similarity=0.391 Sum_probs=39.2
Q ss_pred CCCcCCceeec---CccEEEeecCCCCCCCCCCCCCCCceEEeCccccchHHHHHHHHHHHhhCC
Q 040558 108 ENILKPDVTAP---GVAILAAIVPKVNAGSFPIGKKPAGYAIKSGTSMACPHVTGAAAFIRSVHR 169 (367)
Q Consensus 108 ~~~~KPDi~AP---G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p 169 (367)
.++-+|||+|. +...+..+. +.+....|||+|||++||++|||.|++.
T Consensus 249 ~gR~~PDVaa~a~~~~g~~i~~~--------------g~~~~~gGTS~aaP~~Ag~~Al~n~~~~ 299 (361)
T cd04056 249 SGRGVPDVAANADPGTGYLVVVN--------------GQWYLVGGTSAAAPLFAGLIALINQARL 299 (361)
T ss_pred CCCcCCeeecccCCCCCEEEEEC--------------CeEEeeCCccHHHHHHHHHHHHHHHHhh
Confidence 57889999998 455543332 5788899999999999999999999765
No 64
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=97.84 E-value=1e-05 Score=80.69 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=59.6
Q ss_pred CCCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCCCCC--------CCCCcccceeecccccceeeEEeecc
Q 040558 2 KKVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYEKHV--------PFDSGIFPLSEVGSVAGFQIIHYINS 72 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~~~~--------~~~~~~~p~~~i~~~~g~~l~~~~~~ 72 (367)
.+++||++++.|| .|.|.+| +.|+++||.+++++|+. .+.. ...+..||+++|++++++.+..-..+
T Consensus 92 ~kl~~~~~~v~RG---nC~Ft~Ka~~Aq~aGAsaLliin~~-~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~ 167 (541)
T KOG2442|consen 92 SKLSGKVALVFRG---NCSFTEKAKLAQAAGASALLIINNK-KDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRS 167 (541)
T ss_pred ccccceeEEEecc---cceeehhhhhhhhcCceEEEEEcCc-hhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhcc
Confidence 4689999999999 9999999 99999999999999985 3321 12467899999999999999865555
Q ss_pred cCCCcee
Q 040558 73 TKNPTAT 79 (367)
Q Consensus 73 ~~~~~~~ 79 (367)
+.+.++.
T Consensus 168 ~~~V~~~ 174 (541)
T KOG2442|consen 168 NDNVELA 174 (541)
T ss_pred CCeEEEE
Confidence 5544433
No 65
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=97.74 E-value=3.9e-05 Score=66.00 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=33.3
Q ss_pred CCCceeEEEEEeCCCCCc------------------cHHHH-HHHHHcCceEEEEEecC
Q 040558 2 KKVAGKIIVCVDDDPTVP------------------RKIKK-LVAEDADAKGLILIDED 41 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~------------------~~~~K-~~a~~aGa~gvi~~n~~ 41 (367)
.||+|||||+.+| .| .+..| ++|+++||+|||++++.
T Consensus 44 ~DVkGKIVlv~~g---~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~ 99 (142)
T cd04814 44 LDVKGKVVVVLRN---DPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHEL 99 (142)
T ss_pred CCCCCcEEEEEcC---CCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCC
Confidence 3899999999998 56 57789 99999999999999987
No 66
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.73 E-value=4.7e-05 Score=65.16 Aligned_cols=37 Identities=32% Similarity=0.419 Sum_probs=33.1
Q ss_pred CCCceeEEEEEeCCCCCc------------cHHHH-HHHHHcCceEEEEEecC
Q 040558 2 KKVAGKIIVCVDDDPTVP------------RKIKK-LVAEDADAKGLILIDED 41 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~------------~~~~K-~~a~~aGa~gvi~~n~~ 41 (367)
.||+|||||++++ .| .+..| ++|+++||+|||++++.
T Consensus 46 iDVkGKIVlv~~g---~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~ 95 (137)
T cd04820 46 LDVKGKIVVVLSG---GPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTP 95 (137)
T ss_pred CCCCCeEEEEEcC---CCCccccccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 4899999999998 56 37789 99999999999999987
No 67
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.70 E-value=6.1e-05 Score=65.54 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=34.3
Q ss_pred CCCceeEEEEEeCCC---------------CCccHHHH-HHHHHcCceEEEEEecC
Q 040558 2 KKVAGKIIVCVDDDP---------------TVPRKIKK-LVAEDADAKGLILIDED 41 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~---------------~~~~~~~K-~~a~~aGa~gvi~~n~~ 41 (367)
-||+|||||+.++.+ ..|.+..| .+|+++||+|||++++.
T Consensus 44 iDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~ 99 (151)
T cd04822 44 LDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGP 99 (151)
T ss_pred CCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCC
Confidence 379999999988732 12888999 99999999999999987
No 68
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.70 E-value=4.4e-05 Score=65.91 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=34.1
Q ss_pred CCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecC
Q 040558 3 KVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDED 41 (367)
Q Consensus 3 ~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~ 41 (367)
+|+|||||+++| ...+..| ++|+++||+|+|||.+.
T Consensus 38 ~v~GkIvi~RyG---~~~RG~Kv~~A~~~GA~GviIYsDP 74 (153)
T cd02131 38 NVTNQIALLKLG---QAPLLYKLSLLEEAGFGGVLLYVDP 74 (153)
T ss_pred CccceEEEEecc---CcchHHHHHHHHHCCCeEEEEecCh
Confidence 699999999999 7889999 99999999999999987
No 69
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=97.54 E-value=0.00011 Score=67.77 Aligned_cols=36 Identities=28% Similarity=0.238 Sum_probs=34.1
Q ss_pred CCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecC
Q 040558 3 KVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDED 41 (367)
Q Consensus 3 ~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~ 41 (367)
+|+|||||+++| .|.+.+| ++|+++||+|||||++.
T Consensus 69 dv~GKIvLvr~G---~~~~~~Kv~~A~~~GA~gVIiy~Dp 105 (220)
T cd02121 69 DVKGKIVIARYG---GIFRGLKVKNAQLAGAVGVIIYSDP 105 (220)
T ss_pred CCCCeEEEEECC---CccHHHHHHHHHHcCCEEEEEEeCc
Confidence 799999999999 8988999 99999999999999987
No 70
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.95 E-value=0.0012 Score=57.02 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=57.1
Q ss_pred CCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCCCC--C-------C---CCCcccceeecccccceeeEEe
Q 040558 3 KVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYEKH--V-------P---FDSGIFPLSEVGSVAGFQIIHY 69 (367)
Q Consensus 3 ~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~~~--~-------~---~~~~~~p~~~i~~~~g~~l~~~ 69 (367)
+..|.|+|++|| +|+|..| .+++++||..+|+-++. ... + . .+...+|++.+-..+|..++.-
T Consensus 85 f~~d~vaL~eRG---eCSFl~Ktl~~e~aGa~aiiitd~~-~~~~sf~~YveMI~D~sq~~AniPa~fllg~~Gy~ir~s 160 (193)
T KOG3920|consen 85 FAPDSVALMERG---ECSFLVKTLNGEKAGATAIIITDSQ-NYEYSFHQYVEMIPDESQDRANIPAVFLLGVTGYYIRVS 160 (193)
T ss_pred cCCCcEEEEecC---CceeeehhhhhhhcCceEEEEecCC-CCchhHHHHHHhcCcccccccCCceEEEeccceEEEehh
Confidence 456889999999 9999999 99999999999998654 222 2 0 2457899999999999988876
Q ss_pred ecccCCCceee
Q 040558 70 INSTKNPTATI 80 (367)
Q Consensus 70 ~~~~~~~~~~i 80 (367)
++.-.-+.+.|
T Consensus 161 L~r~~r~ha~i 171 (193)
T KOG3920|consen 161 LKRYFRDHAKI 171 (193)
T ss_pred HHHhCCccEEE
Confidence 65544444444
No 71
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.79 E-value=0.042 Score=43.98 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=59.5
Q ss_pred EEEEEEEEecCCCceeEEEEEeCCCCeEEEEccceeEEecCceEEEEEEEEEeeecCCceEEEEEEEECCceEEEEEEEE
Q 040558 285 ETVKRTVTNVGLQNVTYISRVNAPSGLIVKVLPQKLVFAEGVKRMSFSVSFYGKEAAGGYNFGSVTWSDNRHSVQMMFAV 364 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~ty~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~vt~~~~~~~~~~~~G~l~~~~~~~~vr~P~~v 364 (367)
.+.+.+++|.|..+..|++.......-.++++|..-.+ ++|++.+++|+|..... .+.+.+.|...-....+.+|+-+
T Consensus 22 ~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~~-~g~~~~~l~i~~e~~~~~i~v~a 99 (102)
T PF14874_consen 22 YSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTKP-LGDYEGSLVITTEGGSFEIPVKA 99 (102)
T ss_pred EEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCCC-CceEEEEEEEEECCeEEEEEEEE
Confidence 45667789999999999998754334556777776556 78999999999985333 34467888887666788888877
Q ss_pred Ee
Q 040558 365 NV 366 (367)
Q Consensus 365 ~~ 366 (367)
+.
T Consensus 100 ~~ 101 (102)
T PF14874_consen 100 EV 101 (102)
T ss_pred EE
Confidence 64
No 72
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.00091 Score=65.31 Aligned_cols=64 Identities=14% Similarity=0.010 Sum_probs=50.2
Q ss_pred ceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecCCCCCCC-----CCCcccceeecccccceeeEEeec
Q 040558 5 AGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDEDYEKHVP-----FDSGIFPLSEVGSVAGFQIIHYIN 71 (367)
Q Consensus 5 ~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~~~~~~~-----~~~~~~p~~~i~~~~g~~l~~~~~ 71 (367)
...++|+.|| +|+|.+| .+|+++|.+++|+||+.+.+... .....+++++++...|+.|.+|..
T Consensus 79 ~~~laLI~Rg---~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~l~~~~~ 148 (348)
T KOG4628|consen 79 TSFLALIRRG---GCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGELLSSYAG 148 (348)
T ss_pred cceEEEEEcc---CCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHHHHHhhc
Confidence 4578999999 8999999 99999999999999987233221 234567888888888888877643
No 73
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.51 E-value=0.003 Score=55.35 Aligned_cols=40 Identities=30% Similarity=0.384 Sum_probs=31.2
Q ss_pred CCCceeEEEEEeCCCCC----------------ccHHHH-HHHHHcCceEEEEEecC
Q 040558 2 KKVAGKIIVCVDDDPTV----------------PRKIKK-LVAEDADAKGLILIDED 41 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~----------------~~~~~K-~~a~~aGa~gvi~~n~~ 41 (367)
-||+|||||+.++++.. -....| +.|+++||+|+|++++.
T Consensus 46 ~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 46 LDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred CCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 38999999999875411 123358 99999999999999876
No 74
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.98 E-value=0.091 Score=40.14 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=35.0
Q ss_pred EEEEEEEEecCCCc-eeEEEEEeCCCCeEEEEccceeEEecCceEEEEEEEEEee
Q 040558 285 ETVKRTVTNVGLQN-VTYISRVNAPSGLIVKVLPQKLVFAEGVKRMSFSVSFYGK 338 (367)
Q Consensus 285 ~t~~rtvtNvg~~~-~ty~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~vt~~~~ 338 (367)
.+++.+|+|.|... ...++++..|.|-.+...|..+.--++|++++++++|+..
T Consensus 7 ~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp 61 (78)
T PF10633_consen 7 VTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVP 61 (78)
T ss_dssp EEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-
T ss_pred EEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECC
Confidence 78889999999755 4588889999999988888877644799999999998874
No 75
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.0067 Score=59.29 Aligned_cols=76 Identities=17% Similarity=0.104 Sum_probs=52.8
Q ss_pred EEeCccccchHHHHHHHHHHHhhCCCCCHHHHHHHHhhccccccCCC--CCCCC-CCC-CCCCCCCcccCccChhhhcCc
Q 040558 145 AIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNTG--KPLKN-NAG-STASPHETGVGEISPLKALNP 220 (367)
Q Consensus 145 ~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~tA~~~~~~g--~~~~~-~~~-~~~~~~~~G~G~in~~~A~~~ 220 (367)
..-||||.|+|-.||+.||.++++|.++..+++.+-.-|.+...... ..+.. +.+ ....+..+|+|.+|+.+.+..
T Consensus 379 ~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagamv~l 458 (629)
T KOG3526|consen 379 RSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMVML 458 (629)
T ss_pred cccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHHHHH
Confidence 35799999999999999999999999999999887766665431110 00000 011 122345689999999877653
No 76
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=91.80 E-value=1.2 Score=36.65 Aligned_cols=53 Identities=15% Similarity=0.049 Sum_probs=38.0
Q ss_pred EEEEEEEEecCCCceeEEEEEeCCCCeEEEEccceeEEecCceEEEEEEEEEee
Q 040558 285 ETVKRTVTNVGLQNVTYISRVNAPSGLIVKVLPQKLVFAEGVKRMSFSVSFYGK 338 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~ty~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~vt~~~~ 338 (367)
-.++.+++|.+..+.+|+++++.++|+++......+++ ++|++..+.|.+..+
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEEC
Confidence 35778899999999999999999889999665578888 789999999999884
No 77
>COG1470 Predicted membrane protein [Function unknown]
Probab=85.16 E-value=8.2 Score=39.45 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=52.1
Q ss_pred EEEEEEEEecCCCcee-EEEEEeCCCCeEEEEccceeEEecCceEEEEEEEEEeeec-CCceEEEEEEEE
Q 040558 285 ETVKRTVTNVGLQNVT-YISRVNAPSGLIVKVLPQKLVFAEGVKRMSFSVSFYGKEA-AGGYNFGSVTWS 352 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~t-y~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~vt~~~~~~-~~~~~~G~l~~~ 352 (367)
.+....+.|.|+.+.| -++++..|.|-++.|.|.++---++|+.+++.+|+++++. ..+.++-.|+-+
T Consensus 399 ~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~k 468 (513)
T COG1470 399 KTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAK 468 (513)
T ss_pred ceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEe
Confidence 6777889999987654 7889999999999999997755589999999999998432 223344455544
No 78
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=85.02 E-value=9.8 Score=31.76 Aligned_cols=68 Identities=21% Similarity=0.346 Sum_probs=46.7
Q ss_pred eEEEEEEEEecCCCceeEEEEEeC----CCCeE--------------------EEEccceeEEecCceEEEEEEEEEeee
Q 040558 284 AETVKRTVTNVGLQNVTYISRVNA----PSGLI--------------------VKVLPQKLVFAEGVKRMSFSVSFYGKE 339 (367)
Q Consensus 284 ~~t~~rtvtNvg~~~~ty~~~v~~----p~g~~--------------------v~v~P~~l~~~~~g~~~~~~vt~~~~~ 339 (367)
.+++..+|+|.+++..+|.+++.. ..|+- ++ .|..+++ +++|++.++++++.+.
T Consensus 28 ~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~-~~~~Vtl-~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 28 KQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVK-IPKEVTL-PPNESKTVTFTIKMPK 105 (121)
T ss_pred EEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhcc-CCcEEEE-CCCCEEEEEEEEEcCC
Confidence 388999999999999999998742 12210 12 2444667 7899999999888743
Q ss_pred -cCCceEEEEEEEEC
Q 040558 340 -AAGGYNFGSVTWSD 353 (367)
Q Consensus 340 -~~~~~~~G~l~~~~ 353 (367)
.-.+..-|-|.++.
T Consensus 106 ~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 106 KAFDGIILGGIYFSE 120 (121)
T ss_pred CCcCCEEEeeEEEEe
Confidence 23556667776653
No 79
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=81.10 E-value=24 Score=28.89 Aligned_cols=53 Identities=21% Similarity=0.098 Sum_probs=41.0
Q ss_pred EEEEEEEEecCCCceeEEEEEeC---CC----CeEEEEccceeEEecCceEEEEEEEEEeee
Q 040558 285 ETVKRTVTNVGLQNVTYISRVNA---PS----GLIVKVLPQKLVFAEGVKRMSFSVSFYGKE 339 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~ty~~~v~~---p~----g~~v~v~P~~l~~~~~g~~~~~~vt~~~~~ 339 (367)
.+.+.+|+|.|+.+..+.+.+.. .. .-.+.++|..+.+ ++|+++.+.| +....
T Consensus 16 ~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~ 75 (122)
T PF00345_consen 16 RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSK 75 (122)
T ss_dssp SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSG
T ss_pred CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCC
Confidence 46788999999988888888864 11 1257799999999 7899999999 66433
No 80
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=79.95 E-value=1.8 Score=48.70 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=23.0
Q ss_pred ceEEeCccccchHHHHHHHHHHHhhC
Q 040558 143 GYAIKSGTSMACPHVTGAAAFIRSVH 168 (367)
Q Consensus 143 ~y~~~sGTSmAaP~VAG~aALl~~~~ 168 (367)
...+.-|||.|+|..||+.|++-|..
T Consensus 472 ~~~~~GGTS~AtPltAGiiAdi~q~~ 497 (1174)
T COG4934 472 QTYVAGGTSLATPLTAGIIADIEQYI 497 (1174)
T ss_pred EEEEecccccccchHHHHHHHHHHHh
Confidence 45678999999999999999998864
No 81
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=78.77 E-value=14 Score=29.25 Aligned_cols=50 Identities=16% Similarity=0.301 Sum_probs=38.8
Q ss_pred EEEEEEEEecCCCceeEEEEEeCCCCeEEEEccceeEEecCceEEEEEEEEEe
Q 040558 285 ETVKRTVTNVGLQNVTYISRVNAPSGLIVKVLPQKLVFAEGVKRMSFSVSFYG 337 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~ty~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~vt~~~ 337 (367)
.....+|+|.++....|++....|... .|.|..-.+ ++|++..++|++..
T Consensus 20 ~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i-~p~~~~~i~I~~~~ 69 (109)
T PF00635_consen 20 QSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGII-EPGESVEITITFQP 69 (109)
T ss_dssp EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE--TTEEEEEEEEE-S
T ss_pred EEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEE-CCCCEEEEEEEEEe
Confidence 567789999999999999998888765 467887777 78999999999887
No 82
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=78.31 E-value=11 Score=32.25 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=51.0
Q ss_pred EEEEEEEEecCCCc-eeEEEEEeCCCCeEEEEccceeEEecCceEEEEEEEEEeeecCCceEEEEEEEEC
Q 040558 285 ETVKRTVTNVGLQN-VTYISRVNAPSGLIVKVLPQKLVFAEGVKRMSFSVSFYGKEAAGGYNFGSVTWSD 353 (367)
Q Consensus 285 ~t~~rtvtNvg~~~-~ty~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~vt~~~~~~~~~~~~G~l~~~~ 353 (367)
..+...+-|-.+.. ..-++....-..+++--.|..+++ ++++..+++.+|+..+...+..||.|+++.
T Consensus 71 IvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsStetGvIfG~I~Yd~ 139 (140)
T PF07718_consen 71 IVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSSTETGVIFGNIVYDG 139 (140)
T ss_pred EEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEeccCCEEEEEEEEec
Confidence 44445555655422 224555555677888889999998 789999999999998888899999999874
No 83
>COG1470 Predicted membrane protein [Function unknown]
Probab=76.34 E-value=44 Score=34.36 Aligned_cols=60 Identities=17% Similarity=0.297 Sum_probs=45.3
Q ss_pred EEEEEEEEecCCCceeEEEEEe-CCCCeEEEEccceeEEe----cCceEEEEEEEEEeee--cCCce
Q 040558 285 ETVKRTVTNVGLQNVTYISRVN-APSGLIVKVLPQKLVFA----EGVKRMSFSVSFYGKE--AAGGY 344 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~ty~~~v~-~p~g~~v~v~P~~l~~~----~~g~~~~~~vt~~~~~--~~~~~ 344 (367)
..++.++.|.|....+|.+++. .|+|-.....-..+.++ ++||++.|+|.+..+. ..+.|
T Consensus 286 ~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Y 352 (513)
T COG1470 286 ASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTY 352 (513)
T ss_pred eEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCce
Confidence 5788888999999999999998 78877766554433332 6899999999998743 34444
No 84
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=73.39 E-value=1.8 Score=44.23 Aligned_cols=74 Identities=18% Similarity=0.120 Sum_probs=54.6
Q ss_pred EeCccccchHHHHHHHHHHHhhCCCCCHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCCcccCccChhhhcC
Q 040558 146 IKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSALMTTATVYDNTGKPLKNNAGSTASPHETGVGEISPLKALN 219 (367)
Q Consensus 146 ~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~tA~~~~~~g~~~~~~~~~~~~~~~~G~G~in~~~A~~ 219 (367)
--.|||.++|+.||+.+|.++.+|.++-.++..+...++..........+...........+|+|++|......
T Consensus 251 ~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~~~h~~g~~~~~~~~~~~ 324 (431)
T KOG3525|consen 251 GHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGLVSHLYGFGLLDAKALVS 324 (431)
T ss_pred cCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCceeeeeecccccCcchhhh
Confidence 45799999999999999999999999999998888888875543332332222122233458999999887665
No 85
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=72.25 E-value=17 Score=37.11 Aligned_cols=53 Identities=13% Similarity=0.089 Sum_probs=44.8
Q ss_pred EEEEEEEEecCCCceeEEEEEeCCCCeEEEEccceeEEecCceEEEEEEEEEee
Q 040558 285 ETVKRTVTNVGLQNVTYISRVNAPSGLIVKVLPQKLVFAEGVKRMSFSVSFYGK 338 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~ty~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~vt~~~~ 338 (367)
-..+..+.|.+..+.+|+++++..++.++...+..+++ ++||..++.|.+..+
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEec
Confidence 45677899999999999999999999888876557777 789999888888874
No 86
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=68.05 E-value=16 Score=40.04 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=32.8
Q ss_pred EEEEEEEEecCCCc--eeEEEEEeCCCCeEEEEcc-------ceeEEecCceEEEEEEEEEee
Q 040558 285 ETVKRTVTNVGLQN--VTYISRVNAPSGLIVKVLP-------QKLVFAEGVKRMSFSVSFYGK 338 (367)
Q Consensus 285 ~t~~rtvtNvg~~~--~ty~~~v~~p~g~~v~v~P-------~~l~~~~~g~~~~~~vt~~~~ 338 (367)
.+++.+|||+|+-. ++-.+-+..|.+- +. .| .++.+ ++||+++++++++..
T Consensus 669 i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~ 728 (765)
T PRK15098 669 VTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGETQTVSFPIDIE 728 (765)
T ss_pred EEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCeEEEEEeecHH
Confidence 78999999999844 4444444544321 11 23 12344 799999999998863
No 87
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=66.34 E-value=16 Score=27.87 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=28.4
Q ss_pred EEEEccceeEEecCceEEEEEEEEEeeecCCceEEEEEEEECCc
Q 040558 312 IVKVLPQKLVFAEGVKRMSFSVSFYGKEAAGGYNFGSVTWSDNR 355 (367)
Q Consensus 312 ~v~v~P~~l~~~~~g~~~~~~vt~~~~~~~~~~~~G~l~~~~~~ 355 (367)
.+++.|..+++ ..|++..|++++......+ ...+.|+.+.
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~~~---~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSAKV---TGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCCCc---cceEEEEECC
Confidence 47788998888 5899999999876432221 4677787653
No 88
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=65.22 E-value=6.6 Score=42.51 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=32.6
Q ss_pred CCceeEEEEEeCCCCCccHHHH-HHHHHcCceEEEEEecC
Q 040558 3 KVAGKIIVCVDDDPTVPRKIKK-LVAEDADAKGLILIDED 41 (367)
Q Consensus 3 ~V~GKIvl~~~g~~~~~~~~~K-~~a~~aGa~gvi~~n~~ 41 (367)
+++|||+|.+.+ ...+..| ++++++||.|+|+|.+.
T Consensus 182 ~~~g~i~l~r~~---~i~~g~~~~na~~~~a~gviiy~d~ 218 (702)
T KOG2195|consen 182 NLSGKIVLARVG---KIYRGKKVKNAEAAGADGVIIYTDP 218 (702)
T ss_pred cccCceEEEEcc---ccchhhhHhhHHHhhcCcEEEeecc
Confidence 478999999998 7788888 99999999999999876
No 89
>PLN03080 Probable beta-xylosidase; Provisional
Probab=61.08 E-value=25 Score=38.70 Aligned_cols=76 Identities=17% Similarity=0.096 Sum_probs=41.7
Q ss_pred EEEEEEEEecCCCceeEEE--EEeCCCC-eE----EEEccceeEEecCceEEEEEEEEEe-eec-----CCceE--EEEE
Q 040558 285 ETVKRTVTNVGLQNVTYIS--RVNAPSG-LI----VKVLPQKLVFAEGVKRMSFSVSFYG-KEA-----AGGYN--FGSV 349 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~ty~~--~v~~p~g-~~----v~v~P~~l~~~~~g~~~~~~vt~~~-~~~-----~~~~~--~G~l 349 (367)
.+++.+|||+|+-...-.+ -+..|.. +. --+--+++.+ ++||+++++++++. ..+ ...|. .|..
T Consensus 686 ~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y 764 (779)
T PLN03080 686 FNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDH 764 (779)
T ss_pred EEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCchHHceEEcCCCcEEEeCccE
Confidence 7889999999985444333 3444432 11 1111123344 68999998888875 322 23342 3443
Q ss_pred EE--ECCceEEEEE
Q 040558 350 TW--SDNRHSVQMM 361 (367)
Q Consensus 350 ~~--~~~~~~vr~P 361 (367)
.+ .+..|.|+++
T Consensus 765 ~l~vG~~~~~~~~~ 778 (779)
T PLN03080 765 VLMLGDLEHSLSIE 778 (779)
T ss_pred EEEEeCCccceEEe
Confidence 32 2446776654
No 90
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=51.68 E-value=66 Score=21.63 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=24.2
Q ss_pred EEEEecCCCceeEEEEEeCCCCeEEEEccceeEEecCceEEEEEEEE
Q 040558 289 RTVTNVGLQNVTYISRVNAPSGLIVKVLPQKLVFAEGVKRMSFSVSF 335 (367)
Q Consensus 289 rtvtNvg~~~~ty~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~vt~ 335 (367)
.+++|.|+.+..-. .+...=|= ..++.+.-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgC-t~~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGC-TTAEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCC-EEeeCCcceE-CCCCEEEEEEEC
Confidence 46889998765432 22222222 1223333334 689998888764
No 91
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=51.06 E-value=1.5e+02 Score=27.69 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=36.5
Q ss_pred EEEEEEEEecCCCceeEEEEEe---CC---CC----------eEEEEccceeEEecCceEEEEEEEEEe
Q 040558 285 ETVKRTVTNVGLQNVTYISRVN---AP---SG----------LIVKVLPQKLVFAEGVKRMSFSVSFYG 337 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~ty~~~v~---~p---~g----------~~v~v~P~~l~~~~~g~~~~~~vt~~~ 337 (367)
.....+|.|.|+.+..+++++. .| .+ -.+-++|..|.+ ++|+++.+.|.-..
T Consensus 33 ~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg 100 (234)
T PRK15308 33 EATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQ 100 (234)
T ss_pred ceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcC
Confidence 3456789999998888887653 22 11 146789999998 67888877765544
No 92
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=47.90 E-value=1.2e+02 Score=23.00 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=29.7
Q ss_pred EEEEEEEEecCCCc-eeEEEEEeCCCCeEEEEccceeEEecCceEEEEEEEEEee
Q 040558 285 ETVKRTVTNVGLQN-VTYISRVNAPSGLIVKVLPQKLVFAEGVKRMSFSVSFYGK 338 (367)
Q Consensus 285 ~t~~rtvtNvg~~~-~ty~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~vt~~~~ 338 (367)
.+++.+|+|.|... ..+.+.+... |..+. ....-.+ ++|++.++++++...
T Consensus 21 ~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~~-~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 21 VTITVTVKNNGTADAENVTVRLYLD-GNSVS-TVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp EEEEEEEEE-SSS-BEEEEEEEEET-TEEEE-EEEESEB--TTEEEEEEEEEE-S
T ss_pred EEEEEEEEECCCCCCCCEEEEEEEC-Cceec-cEEECCc-CCCcEEEEEEEEEeC
Confidence 78889999999864 5566666443 22221 1111244 688888888887765
No 93
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=45.67 E-value=21 Score=23.67 Aligned_cols=25 Identities=8% Similarity=0.190 Sum_probs=19.4
Q ss_pred HHHHHhhCCCCCHHHHHHHHhhccc
Q 040558 161 AAFIRSVHRRWSSSIIKSALMTTAT 185 (367)
Q Consensus 161 aALl~~~~p~~s~~~ik~~L~~tA~ 185 (367)
+--|++.+|+|+...|+..|...-.
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~~ 29 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANNG 29 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCC
Confidence 3457889999999999999965543
No 94
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=38.80 E-value=1.8e+02 Score=22.35 Aligned_cols=53 Identities=25% Similarity=0.129 Sum_probs=26.1
Q ss_pred EEEEEEEEecCCCcee--------EEEEEeCCCCeEEE---------EccceeEEecCceEEEEEEEEEee
Q 040558 285 ETVKRTVTNVGLQNVT--------YISRVNAPSGLIVK---------VLPQKLVFAEGVKRMSFSVSFYGK 338 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~t--------y~~~v~~p~g~~v~---------v~P~~l~~~~~g~~~~~~vt~~~~ 338 (367)
..++.+|+|.++.+.+ |.+.+..+.|-.|- -.-...++ ++||+.+|+.+++..
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~ 71 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLK 71 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS-
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCC
Confidence 3466778888875433 44555544444442 22223345 689999998888653
No 95
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=36.94 E-value=16 Score=15.81 Aligned_cols=6 Identities=50% Similarity=0.717 Sum_probs=4.4
Q ss_pred cCCCCC
Q 040558 97 YFSSRG 102 (367)
Q Consensus 97 ~fSs~G 102 (367)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 577876
No 96
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=36.61 E-value=3e+02 Score=31.13 Aligned_cols=25 Identities=4% Similarity=-0.084 Sum_probs=18.1
Q ss_pred HHHHHhhCCCCCHHHHHHHHhhccc
Q 040558 161 AAFIRSVHRRWSSSIIKSALMTTAT 185 (367)
Q Consensus 161 aALl~~~~p~~s~~~ik~~L~~tA~ 185 (367)
.-=++|+||+.+.+|+..+....+.
T Consensus 323 l~el~~~~p~~~~~~l~~~a~~~~~ 347 (928)
T TIGR00845 323 LKELKQKHPDKDLEQLEEMANYQVL 347 (928)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHHh
Confidence 3346788999999998776655443
No 97
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=34.37 E-value=2.1e+02 Score=21.92 Aligned_cols=62 Identities=23% Similarity=0.221 Sum_probs=38.7
Q ss_pred EEEEEEEEecCCCceeEEEEEeCCCCeEEEEccceeEEecCceEEEEEEEEEeeecCCceEEEEEEEECC
Q 040558 285 ETVKRTVTNVGLQNVTYISRVNAPSGLIVKVLPQKLVFAEGVKRMSFSVSFYGKEAAGGYNFGSVTWSDN 354 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~ty~~~v~~p~g~~v~v~P~~l~~~~~g~~~~~~vt~~~~~~~~~~~~G~l~~~~~ 354 (367)
..+..+++|.|....++++.-..-. .-.|..+++ ++|++++....+ ....+||.=.|+..++
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v-~ag~~~~~~w~l---~~s~gwYDl~v~~~~~ 81 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTV-AAGQTVSLTWPL---AASGGWYDLTVTGPNG 81 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEE-CCCCEEEEEEee---cCCCCcEEEEEEcCCC
Confidence 4688899999998887777652211 123566677 678887766655 2445677644443333
No 98
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=33.13 E-value=32 Score=22.06 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=10.8
Q ss_pred cchHHHHHHHHHH
Q 040558 152 MACPHVTGAAAFI 164 (367)
Q Consensus 152 mAaP~VAG~aALl 164 (367)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998754
No 99
>PRK15019 CsdA-binding activator; Provisional
Probab=31.91 E-value=45 Score=28.89 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=27.9
Q ss_pred eEEeCccccchHHHHHHHHHHHhhCCCCCHHHHHH
Q 040558 144 YAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKS 178 (367)
Q Consensus 144 y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~ 178 (367)
-..+.|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 76 ~~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 76 KMHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34444555 57999999999999999999999865
No 100
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=31.46 E-value=47 Score=28.42 Aligned_cols=34 Identities=15% Similarity=0.014 Sum_probs=28.4
Q ss_pred eEEeCccccchHHHHHHHHHHHhhCCCCCHHHHHH
Q 040558 144 YAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKS 178 (367)
Q Consensus 144 y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~ 178 (367)
-..+.|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 71 ~~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~ 104 (138)
T TIGR03391 71 TLHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLA 104 (138)
T ss_pred EEEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 44455666 48999999999999999999999864
No 101
>PRK13202 ureB urease subunit beta; Reviewed
Probab=28.89 E-value=1.6e+02 Score=24.02 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=26.4
Q ss_pred EEEEEEEEecCCCce----eEEEEEe---------CCCCeEEEEcc-ceeEEecCceEEEEEEE
Q 040558 285 ETVKRTVTNVGLQNV----TYISRVN---------APSGLIVKVLP-QKLVFAEGVKRMSFSVS 334 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~----ty~~~v~---------~p~g~~v~v~P-~~l~~~~~g~~~~~~vt 334 (367)
.+++.+|+|.||.+. -|++-=. ..-|..+.+.. ..+.| ++|+++++++.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRF-EPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEE-CCCCeEEEEEE
Confidence 467789999999653 2443111 11233333311 13456 67888887653
No 102
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=28.49 E-value=3.8e+02 Score=24.75 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=33.6
Q ss_pred EEEEEEEEecCCC-ceeEEEEEeCCCC---eEEEEccceeEEecCceEEEEEEEEEe
Q 040558 285 ETVKRTVTNVGLQ-NVTYISRVNAPSG---LIVKVLPQKLVFAEGVKRMSFSVSFYG 337 (367)
Q Consensus 285 ~t~~rtvtNvg~~-~~ty~~~v~~p~g---~~v~v~P~~l~~~~~g~~~~~~vt~~~ 337 (367)
...+.+|+|.++. +.-....++...+ ..+-|+|..+.+ ++++.+.+.|....
T Consensus 37 ~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl-~p~~~q~lRIi~~~ 92 (228)
T PRK15208 37 KEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKL-DPTKNNVLRIVNIT 92 (228)
T ss_pred ceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEE-CCCCccEEEEEECC
Confidence 5667888888764 3333334443322 237789999988 67888888876543
No 103
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=27.49 E-value=86 Score=20.67 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.0
Q ss_pred HHHHHHhhCCCCCHHHHHHHHhhcc
Q 040558 160 AAAFIRSVHRRWSSSIIKSALMTTA 184 (367)
Q Consensus 160 ~aALl~~~~p~~s~~~ik~~L~~tA 184 (367)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567889999999999999998543
No 104
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=27.36 E-value=61 Score=27.75 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=27.9
Q ss_pred eEEeCccccchHHHHHHHHHHHhhCCCCCHHHHHH
Q 040558 144 YAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKS 178 (367)
Q Consensus 144 y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~ 178 (367)
-..+.|.| =|+.|-|.+||+.+.+-..+|++|.+
T Consensus 66 ~~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 66 IIELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34445556 58999999999999999999999864
No 105
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=26.75 E-value=2.2e+02 Score=23.05 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=26.2
Q ss_pred EEEEEEEEecCCCce----eEEEEEe---------CCCCeEEEEcc-ceeEEecCceEEEEEE
Q 040558 285 ETVKRTVTNVGLQNV----TYISRVN---------APSGLIVKVLP-QKLVFAEGVKRMSFSV 333 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~----ty~~~v~---------~p~g~~v~v~P-~~l~~~~~g~~~~~~v 333 (367)
.+.+.+|+|.||.+. -|++-=. ..-|..+.+.. ..+.| ++|+++++++
T Consensus 20 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~L 81 (101)
T TIGR00192 20 KTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRF-EPGEEKSVEL 81 (101)
T ss_pred cEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeE-CCCCeEEEEE
Confidence 567889999999653 2433111 11233333311 13456 6788888765
No 106
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=26.58 E-value=1.4e+02 Score=21.04 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=26.6
Q ss_pred CceEEeCccccchHHHHHHHH------HHHhhCCCCCHHHHHHHHh
Q 040558 142 AGYAIKSGTSMACPHVTGAAA------FIRSVHRRWSSSIIKSALM 181 (367)
Q Consensus 142 ~~y~~~sGTSmAaP~VAG~aA------Ll~~~~p~~s~~~ik~~L~ 181 (367)
++--++.||-+..=.+....+ -+.+.||.++.++|+++|.
T Consensus 9 ~G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 9 GGQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp GG--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CCcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 456678888888777766654 2566799999999999884
No 107
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=26.49 E-value=1.1e+02 Score=23.21 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=15.4
Q ss_pred cHHHH-HHHHHcCceEEEEEe
Q 040558 20 RKIKK-LVAEDADAKGLILID 39 (367)
Q Consensus 20 ~~~~K-~~a~~aGa~gvi~~n 39 (367)
.+.+. +.++++||.|++++.
T Consensus 51 ~~~~~~~~Lk~~GA~~Ilv~p 71 (75)
T PF08029_consen 51 QVWDLMDKLKAAGASDILVLP 71 (75)
T ss_dssp CHHHHHHHHHCTT-EEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEe
Confidence 34555 899999999999886
No 108
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=26.33 E-value=1.3e+02 Score=30.18 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=41.1
Q ss_pred CCCceeEEEEEeCCCCCccHHHH---HHHHHcCceEEEEEecCCCCCC----------CCCCcccceeecccccceeeE
Q 040558 2 KKVAGKIIVCVDDDPTVPRKIKK---LVAEDADAKGLILIDEDYEKHV----------PFDSGIFPLSEVGSVAGFQII 67 (367)
Q Consensus 2 ~~V~GKIvl~~~g~~~~~~~~~K---~~a~~aGa~gvi~~n~~~~~~~----------~~~~~~~p~~~i~~~~g~~l~ 67 (367)
.|+.|+|++-++- +.-...| -.|.++||-|+||--.+ +.-+ +..+..+|++.+...++..+.
T Consensus 86 gD~~Gr~~Va~~p---q~vdd~k~~~i~Aae~ga~a~~f~~~~-~rriV~~Gd~gy~~~s~PtPIPva~v~en~~~y~~ 160 (486)
T COG4882 86 GDAGGRVVVARAP---QVVDDLKAAAILAAEAGAEALLFESRD-PRRIVTGGDWGYSVSSSPTPIPVAVVPENYSRYAE 160 (486)
T ss_pred CCCCCeEEeeecc---ccHHHHHHHHHHHHHcCCeEEEEecCC-ceeEEecccccccCCCCCCCcceEEeccCcchhhc
Confidence 4677888887774 3333344 56788999999987654 3221 134678999988777766543
No 109
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=26.29 E-value=68 Score=26.84 Aligned_cols=35 Identities=17% Similarity=0.007 Sum_probs=27.2
Q ss_pred eEEeCccccchHHHHHHHHHHHhhCCCCCHHHHHHH
Q 040558 144 YAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKSA 179 (367)
Q Consensus 144 y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~ 179 (367)
-..+.|.|= |+.|-|++||+.+.+-+.+|++|.+.
T Consensus 57 ~~~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 57 KVHFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 335556665 67999999999999999999998653
No 110
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=26.15 E-value=1.9e+02 Score=23.01 Aligned_cols=55 Identities=13% Similarity=0.016 Sum_probs=28.0
Q ss_pred EEEEEEEEecCCCceeE---EEEEeCCCCeEEEEccc---------eeEEecCceEEEEEEEEEeeec
Q 040558 285 ETVKRTVTNVGLQNVTY---ISRVNAPSGLIVKVLPQ---------KLVFAEGVKRMSFSVSFYGKEA 340 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~ty---~~~v~~p~g~~v~v~P~---------~l~~~~~g~~~~~~vt~~~~~~ 340 (367)
..+..+|+|.|+....+ .+.+....|-....... .-++ ++|++.+..+.|..+..
T Consensus 38 v~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i-~pG~~~~g~l~F~vp~~ 104 (123)
T PF11611_consen 38 VVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETI-KPGESVTGKLVFEVPKD 104 (123)
T ss_dssp EEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE--TT-EEEEEEEEEESTT
T ss_pred EEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEE-CCCCEEEEEEEEEECCC
Confidence 57788999999876543 23343344333332221 1234 68888888888887443
No 111
>PRK13203 ureB urease subunit beta; Reviewed
Probab=25.94 E-value=2.3e+02 Score=23.03 Aligned_cols=14 Identities=50% Similarity=0.499 Sum_probs=11.6
Q ss_pred EEEEEEEEecCCCc
Q 040558 285 ETVKRTVTNVGLQN 298 (367)
Q Consensus 285 ~t~~rtvtNvg~~~ 298 (367)
.+++.+|+|.||.+
T Consensus 20 ~~~~l~V~NtGDRP 33 (102)
T PRK13203 20 ETVTLTVANTGDRP 33 (102)
T ss_pred CEEEEEEEeCCCCc
Confidence 56788999999965
No 112
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=25.21 E-value=3e+02 Score=22.23 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=10.4
Q ss_pred EEEEEEEEecCCCc
Q 040558 285 ETVKRTVTNVGLQN 298 (367)
Q Consensus 285 ~t~~rtvtNvg~~~ 298 (367)
.+++.+|+|.||.+
T Consensus 19 ~~~~l~V~N~GDRP 32 (100)
T PF00699_consen 19 ERITLEVTNTGDRP 32 (100)
T ss_dssp EEEEEEEEE-SSS-
T ss_pred cEEEEEEEeCCCcc
Confidence 67889999999965
No 113
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=25.16 E-value=2.8e+02 Score=22.44 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=26.2
Q ss_pred EEEEEEEEecCCCce----eEEEEEe---------CCCCeEEEEcc-ceeEEecCceEEEEEE
Q 040558 285 ETVKRTVTNVGLQNV----TYISRVN---------APSGLIVKVLP-QKLVFAEGVKRMSFSV 333 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~----ty~~~v~---------~p~g~~v~v~P-~~l~~~~~g~~~~~~v 333 (367)
.+++.+|+|.||.+. -|++-=. ..-|..+.+.. ..+.| ++|+++++++
T Consensus 20 ~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~L 81 (101)
T cd00407 20 EAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRF-EPGEEKEVEL 81 (101)
T ss_pred CEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEE-CCCCeEEEEE
Confidence 567889999999653 2443111 11233333311 13455 6788888765
No 114
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.16 E-value=69 Score=27.68 Aligned_cols=35 Identities=20% Similarity=0.079 Sum_probs=27.1
Q ss_pred ceEEeCccccchHHHHHHHHHHHhhCCCCCHHHHHH
Q 040558 143 GYAIKSGTSMACPHVTGAAAFIRSVHRRWSSSIIKS 178 (367)
Q Consensus 143 ~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~ 178 (367)
+-..+.|=|= |+.|.|.+|++...+-..+|++|..
T Consensus 70 ~~~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 70 GTLHFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred ceEEEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 3344455554 6899999999999999999999743
No 115
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=23.86 E-value=1.9e+02 Score=21.24 Aligned_cols=29 Identities=34% Similarity=0.360 Sum_probs=18.3
Q ss_pred EEEEEEEEecCCCcee-EEEEEeCCCCeEE
Q 040558 285 ETVKRTVTNVGLQNVT-YISRVNAPSGLIV 313 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~t-y~~~v~~p~g~~v 313 (367)
.+++.+|+|.|+.... ..+.-.-|.|+.+
T Consensus 43 v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 43 VTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred EEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 7888999999986532 3333334566543
No 116
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.40 E-value=3.2e+02 Score=27.49 Aligned_cols=52 Identities=29% Similarity=0.321 Sum_probs=32.6
Q ss_pred EEEEEEecCCCceeEEEEEe-CCCCeEEEEccceeEEe-cCceEEEEEEEEEee
Q 040558 287 VKRTVTNVGLQNVTYISRVN-APSGLIVKVLPQKLVFA-EGVKRMSFSVSFYGK 338 (367)
Q Consensus 287 ~~rtvtNvg~~~~ty~~~v~-~p~g~~v~v~P~~l~~~-~~g~~~~~~vt~~~~ 338 (367)
+.--+++-+.+...-.+.++ -|.|++++|.|+..++. ...+++.|.|++...
T Consensus 94 V~ADLt~a~~Gt~evkl~ve~l~~~ltvsV~P~~~~Vti~kk~tkk~~V~vei~ 147 (403)
T COG4856 94 VVADLTHAGVGTHEVKLQVEGLPDGLTVSVNPEKATVTIEKKVTKKFPVSVEID 147 (403)
T ss_pred EEEEhhhcCCCceEeeeEeecCCCCceEEEccceeEEEEeeeeEEEEeeeEEEc
Confidence 33344565554444444443 48999999999988764 334556777777663
No 117
>PRK13201 ureB urease subunit beta; Reviewed
Probab=23.13 E-value=2.8e+02 Score=23.63 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=11.6
Q ss_pred EEEEEEEEecCCCc
Q 040558 285 ETVKRTVTNVGLQN 298 (367)
Q Consensus 285 ~t~~rtvtNvg~~~ 298 (367)
.+++.+|+|.|+.+
T Consensus 20 ~~~~l~V~NtGDRP 33 (136)
T PRK13201 20 PETVIEVENTGDRP 33 (136)
T ss_pred CEEEEEEEeCCCcc
Confidence 56788999999965
No 118
>PRK13205 ureB urease subunit beta; Reviewed
Probab=23.10 E-value=2.7e+02 Score=24.28 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=11.8
Q ss_pred EEEEEEEEecCCCc
Q 040558 285 ETVKRTVTNVGLQN 298 (367)
Q Consensus 285 ~t~~rtvtNvg~~~ 298 (367)
.+++.+|+|.|+.+
T Consensus 20 ~~i~L~V~NtGDRP 33 (162)
T PRK13205 20 EAKTIEIINTGDRP 33 (162)
T ss_pred cEEEEEEEeCCCCc
Confidence 57889999999965
No 119
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=21.16 E-value=2.7e+02 Score=19.33 Aligned_cols=36 Identities=28% Similarity=0.220 Sum_probs=22.2
Q ss_pred EEEEEEEEecCCCcee-EEEEEeCCCCeEEEEccceeEE
Q 040558 285 ETVKRTVTNVGLQNVT-YISRVNAPSGLIVKVLPQKLVF 322 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~t-y~~~v~~p~g~~v~v~P~~l~~ 322 (367)
.+++.+|+|.|....+ ..+.-.-|.|+.. .|.++++
T Consensus 14 v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 14 ITYTITVTNNGNVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred EEEEEEEEECCCCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 7899999999986543 3333344666543 3444444
No 120
>PRK13204 ureB urease subunit beta; Reviewed
Probab=20.87 E-value=3.1e+02 Score=23.95 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=26.7
Q ss_pred EEEEEEEEecCCCce----eEEEEEe---------CCCCeEEEEcc-ceeEEecCceEEEEEEE
Q 040558 285 ETVKRTVTNVGLQNV----TYISRVN---------APSGLIVKVLP-QKLVFAEGVKRMSFSVS 334 (367)
Q Consensus 285 ~t~~rtvtNvg~~~~----ty~~~v~---------~p~g~~v~v~P-~~l~~~~~g~~~~~~vt 334 (367)
.+++.+|+|.|+.+. -|++-=. ..-|..+.+-. ..+.| ++|+++++++.
T Consensus 43 ~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF-EPG~~k~V~LV 105 (159)
T PRK13204 43 PRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRF-EPGDEKEVTLV 105 (159)
T ss_pred cEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeE-CCCCeeEEEEE
Confidence 567899999999653 2443111 11233333211 13456 67888877653
No 121
>PRK09372 ribonuclease activity regulator protein RraA; Provisional
Probab=20.20 E-value=1.4e+02 Score=26.15 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=23.8
Q ss_pred ceeEEEEEeCCCCCc-cHHHH--HHHHHcCceEEEEE
Q 040558 5 AGKIIVCVDDDPTVP-RKIKK--LVAEDADAKGLILI 38 (367)
Q Consensus 5 ~GKIvl~~~g~~~~~-~~~~K--~~a~~aGa~gvi~~ 38 (367)
.|+|++++.+....+ .+.+- ..+++.|.+|+|+.
T Consensus 57 ~GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~Vid 93 (159)
T PRK09372 57 EGRVLVVDGGGSLRRALVGDNLAELAVDNGWEGIVVY 93 (159)
T ss_pred CCeEEEEECCCCcCcEeehHHHHHHHHHcCCeEEEec
Confidence 688999987533233 33444 67899999998864
No 122
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=20.07 E-value=6.8e+02 Score=23.81 Aligned_cols=21 Identities=14% Similarity=0.526 Sum_probs=11.8
Q ss_pred EEEEEEEE-----CCceEEEEEEEEE
Q 040558 345 NFGSVTWS-----DNRHSVQMMFAVN 365 (367)
Q Consensus 345 ~~G~l~~~-----~~~~~vr~P~~v~ 365 (367)
..|.+.|+ +++..++.-|.|.
T Consensus 289 ~~g~~~W~~~l~~g~~~~l~~~y~v~ 314 (317)
T PF13598_consen 289 KDGILEWKVTLPPGESRTLEFSYEVE 314 (317)
T ss_pred CCCEEEEEEEECCCCEEEEEEEEEEE
Confidence 35667776 2355566555554
Done!