BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040559
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 145/291 (49%), Gaps = 21/291 (7%)
Query: 37 LPSIDLARLNFRSFDKWIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRK 96
P I L ++N E + +A WGFF+++NHGIP++V +++ K ++K
Sbjct: 4 FPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXT----KGHYKK 59
Query: 97 KSEQNFMNLSADSYRWGNPKATCLKQFLWSEAL---HIPVTDISRLGDESNNPRSTIGLF 153
EQ F L A G W H+P+++IS + D R F
Sbjct: 60 CXEQRFKELVASKALEGVQAEVTDXD--WESTFFLKHLPISNISEVPDLDEEYREVXRDF 117
Query: 154 STKAANLAERLAEYLARNLKIKSSYFRENCLPGSSY----LRMNRYPPCPPSFEVLGLIP 209
+ + LAE L + L NL ++ Y + N GS +++ YPPCP + GL
Sbjct: 118 AKRLEKLAEELLDLLCENLGLEKGYLK-NAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRA 176
Query: 210 HTDSDFLTILYQD-HVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRV 268
HTD+ + +L+QD V GLQL KDG+W+ V P ++VN+GD + ++NG YKSV HRV
Sbjct: 177 HTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRV 236
Query: 269 VSHPKVERYSVAYFYCPSYEAVIESTENIIE------PAIYRKFSFREYKQ 313
++ R S+A FY P +AVI ++E +Y KF F +Y +
Sbjct: 237 IAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXK 287
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 138/297 (46%), Gaps = 19/297 (6%)
Query: 36 QLPSIDLARLNFRSFDK-----WIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIF 90
Q+P+IDL N S D+ IEE+ +A+ WG ++NHGIP ++E ++K + F
Sbjct: 46 QVPTIDLK--NIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFF 103
Query: 91 HQPFRKKSEQNFMNLSADSYRWGNPKAT-CLKQFLWSEAL-HIPVTDISR-LGDESNNPR 147
+K + + +G+ A Q W + H+ + R L P
Sbjct: 104 SLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS 163
Query: 148 STIGLFSTKAANL---AERLAEYLARNLKIKSSYFRENCLPGSSYL---RMNRYPPCPPS 201
I S A L A ++ + L+ L ++ + L ++N YP CP
Sbjct: 164 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQP 223
Query: 202 FEVLGLIPHTDSDFLTILYQDHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVY 261
LG+ HTD LT + + V GLQL +G+W++ K PD +++++GD + LSNG Y
Sbjct: 224 ELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKY 283
Query: 262 KSVEHRVVSHPKVERYSVAYFYC--PSYEAVIESTENIIEPAIYRKFSFREYKQQIQ 316
KS+ HR + + + R S A F C P + V++ ++ KF R + Q I+
Sbjct: 284 KSILHRGLVNKEKVRISWAVF-CEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 339
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 138/297 (46%), Gaps = 19/297 (6%)
Query: 36 QLPSIDLARLNFRSFDK-----WIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIF 90
Q+P+IDL N S D+ IEE+ +A+ WG ++NHGIP ++E ++K + F
Sbjct: 45 QVPTIDLK--NIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFF 102
Query: 91 HQPFRKKSEQNFMNLSADSYRWGNPKAT-CLKQFLWSEAL-HIPVTDISR-LGDESNNPR 147
+K + + +G+ A Q W + H+ + R L P
Sbjct: 103 SLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS 162
Query: 148 STIGLFSTKAANL---AERLAEYLARNLKIKSSYFRENCLPGSSYL---RMNRYPPCPPS 201
I S A L A ++ + L+ L ++ + L ++N YP CP
Sbjct: 163 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQP 222
Query: 202 FEVLGLIPHTDSDFLTILYQDHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVY 261
LG+ HTD LT + + V GLQL +G+W++ K PD +++++GD + LSNG Y
Sbjct: 223 ELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKY 282
Query: 262 KSVEHRVVSHPKVERYSVAYFYC--PSYEAVIESTENIIEPAIYRKFSFREYKQQIQ 316
KS+ HR + + + R S A F C P + V++ ++ KF R + Q I+
Sbjct: 283 KSILHRGLVNKEKVRISWAVF-CEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 338
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 125/270 (46%), Gaps = 16/270 (5%)
Query: 36 QLPSIDLARLNFRSFDK-----WIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIF 90
Q+P+IDL N S D+ IEE+ +A+ WG ++NHGIP + E ++K + F
Sbjct: 46 QVPTIDLK--NIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFF 103
Query: 91 HQPFRKKSEQNFMNLSADSYRWGNPKAT-CLKQFLWSEAL-HIPVTDISR-LGDESNNPR 147
+K + + +G+ A Q W + H+ + R L P
Sbjct: 104 SLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS 163
Query: 148 STIGLFSTKAANL---AERLAEYLARNLKIKSSYFRENCLPGSSYL---RMNRYPPCPPS 201
I S A L A ++ + L+ L ++ + L ++N YP CP
Sbjct: 164 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQP 223
Query: 202 FEVLGLIPHTDSDFLTILYQDHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVY 261
LG+ HTD LT + + V GLQL +G+W++ K PD ++ ++GD + LSNG Y
Sbjct: 224 ELALGVEAHTDVSALTFILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKY 283
Query: 262 KSVEHRVVSHPKVERYSVAYFYCPSYEAVI 291
KS+ HR + + + R S A F P + ++
Sbjct: 284 KSILHRGLVNKEKVRISWAVFCEPPKDKIV 313
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 121/269 (44%), Gaps = 19/269 (7%)
Query: 48 RSFDKWIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRKKSEQNFMNLSA 107
+ F ++ +E+ + ++GF + ++ + Q +++ F P K + + A
Sbjct: 17 KDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGA 76
Query: 108 DSY-RWGNPKATC-----LKQFLWSEALHIPVTDISRLGDESNNPRSTIGLFSTKAANL- 160
Y +G A LK+F W +P R N + I F + L
Sbjct: 77 RGYIPFGVETAKGADHYDLKEF-WHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLY 135
Query: 161 ------AERLAEYLARNLKIKSSYFRENCLPGSSYLRMNRYPPCPPSFEVLGLIPHTDSD 214
++ E +A LK++ +F+ G+S LR+ YPP P + H D +
Sbjct: 136 NSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDIN 195
Query: 215 FLTILYQDHVGGLQ-LKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVSHP- 272
+T+L GGL+ L +DG+WL + P P L++N+GD + L+N V S HRVV+ P
Sbjct: 196 TITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPP 255
Query: 273 ---KVERYSVAYFYCPSYEAVIESTENII 298
V RYS +F + + I++ +N +
Sbjct: 256 ERRGVPRYSTPFFLHFASDYEIKTLQNCV 284
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 15/238 (6%)
Query: 42 LARLNFRSFDKWIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRKKSEQN 101
L +++R+ D + E+ + GF + NH I ++++E + E F+ K+E
Sbjct: 4 LETIDYRAADS-AKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNS--EAKNEFX 60
Query: 102 FMNLSADSYRWGNPKATCLKQFLWSEALHIPVTDISRLGDESNNPRSTIGLFSTKAANLA 161
F + D + + T + + V R+ D + R+ I + KA LA
Sbjct: 61 FNRETHDGFFPASISETAKGHTVKDIKEYYHVYPWGRIPD---SLRANILAYYEKANTLA 117
Query: 162 ERLAEYLAR----NLKIKSSYFRENCLPGS--SYLRMNRYPPCPPSFEVLGL--IPHTDS 213
L E++ +K K S + S + LR+ YPP E + H D
Sbjct: 118 SELLEWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDI 177
Query: 214 DFLTILYQDHVGGLQLK-KDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVS 270
+ +T+L + GLQ+K KDG WL V + +I+N+GD Q S+G + S HRV++
Sbjct: 178 NLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVIN 235
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 119/291 (40%), Gaps = 33/291 (11%)
Query: 34 ECQLPSIDLARL--NFRSFDKWIEEMAEAASQ-WGFFQVMNHGIPQKVLESMRKE-QMKI 89
+ +P ID++ L + ++ + + +AAS+ GFF +NHGI + L KE M I
Sbjct: 6 KANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSI 65
Query: 90 FHQPFRKKSEQNFMNLSADSYRWGN----PKATCLKQFLWSE----------ALHIPVTD 135
+ + + + D R G P ++ F + P +
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHE 125
Query: 136 ISRLGDESNNP--RSTIGLFSTKAANLAERLAEYLARNLKIKSSYFRENCLPGSSY--LR 191
++ DE+ +P + + L+ L + A L + ++F + P + +
Sbjct: 126 VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 192 MNRYPPCPPSFEV----------LGLIPHTDSDFLTILYQDHVGGLQLKKDGRWLSVKPN 241
+ RYP P E L H D +T+LYQ +V LQ++ + ++ +
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEAD 245
Query: 242 PDVLIVNVGDLFQALSNGVYKSVEHRVVSHPKVERYSVAYFYCPSYEAVIE 292
++N G L+N YK+ HR V ER S+ +F Y++VI+
Sbjct: 246 DTGYLINCGSYMAHLTNNYYKAPIHR-VKWVNAERQSLPFFVNLGYDSVID 295
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 119/291 (40%), Gaps = 33/291 (11%)
Query: 34 ECQLPSIDLARL--NFRSFDKWIEEMAEAASQ-WGFFQVMNHGIPQKVLESMRKE-QMKI 89
+ +P ID++ L + ++ + + +AAS+ GFF +NHGI + L KE M I
Sbjct: 6 KANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSI 65
Query: 90 FHQPFRKKSEQNFMNLSADSYRWGN----PKATCLKQFLWSE----------ALHIPVTD 135
+ + + + D R G P ++ F + P +
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHE 125
Query: 136 ISRLGDESNNP--RSTIGLFSTKAANLAERLAEYLARNLKIKSSYFRENCLPGSSY--LR 191
++ DE+ +P + + L+ L + A L + ++F + P + +
Sbjct: 126 VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 192 MNRYPPCPPSFEV----------LGLIPHTDSDFLTILYQDHVGGLQLKKDGRWLSVKPN 241
+ RYP P E L H D +T+LYQ +V LQ++ + ++ +
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEAD 245
Query: 242 PDVLIVNVGDLFQALSNGVYKSVEHRVVSHPKVERYSVAYFYCPSYEAVIE 292
++N G L+N YK+ HR V ER S+ +F Y++VI+
Sbjct: 246 DTGYLINCGSYMAHLTNNYYKAPIHR-VKWVNAERQSLPFFVNLGYDSVID 295
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 168 LARNLKIKSSYFRENCLPGSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTILYQDHVGGL 227
L +++ + YF LP + +++N PP P F + P TD + + +D GG
Sbjct: 95 LVKDVNDEPPYFINRPLPMQAVVQLN-APPNTPVFTLQARDPDTDHNIHYFIVRDRTGG- 152
Query: 228 QLKKDGRWLSVKP-NPDVLIVNVGDLFQALSNGVYKSVEHRVVSHPKVERYSVA------ 280
+ + D R V+ D+ +++ + + V+ R ER S+
Sbjct: 153 RFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAP 212
Query: 281 YFYCPSYEAVI 291
FY PSYEA I
Sbjct: 213 QFYMPSYEAEI 223
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 168 LARNLKIKSSYFRENCLPGSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTILYQDHVGGL 227
L +++ + YF LP + +++N PP P F + P TD + + +D GG
Sbjct: 100 LVKDVNDEPPYFINRPLPMQAVVQLN-APPNTPVFTLQARDPDTDHNIHYFIVRDRTGG- 157
Query: 228 QLKKDGRWLSVKP-NPDVLIVNVGDLFQALSNGVYKSVEHRVVSHPKVERYSVA------ 280
+ + D R V+ D+ +++ + + V+ R ER S+
Sbjct: 158 RFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAP 217
Query: 281 YFYCPSYEAVI 291
FY PSYEA I
Sbjct: 218 QFYMPSYEAEI 228
>pdb|3DEC|A Chain A, Crystal Structure Of A Glycosyl Hydrolases Family 2
Protein From Bacteroides Thetaiotaomicron
Length = 1000
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 47/124 (37%), Gaps = 31/124 (25%)
Query: 225 GGLQLKKDGRWLSV------------KPNPDVLIVNVGDLFQALSNGV--------YKSV 264
G L KD WL K +P V+I ++G+ NG+ KSV
Sbjct: 421 GPASLAKDSTWLPAHIDRTRRXYERSKNHPSVVIWSLGN---EAGNGINFERTYDWLKSV 477
Query: 265 E-HRVVSHPKVERYSVAYFYCPSYEAVIESTENIIEPAIYRKFSFREYKQQIQEDVRATG 323
E +R V + + E YC Y +V ++ IYR F EY + A G
Sbjct: 478 EKNRPVQYERAEENYNTDIYCRXYRSVDVIRNYVVRKDIYRPFILCEY-------LHAXG 530
Query: 324 NKVG 327
N G
Sbjct: 531 NSCG 534
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 182 NCLPGSSYLRMNRYPPCPPSFEV----LGLIPHTDSDFLTILYQDHVG----GLQLKKDG 233
+C P LR +P P L + PH D +T++ Q LQ + G
Sbjct: 154 DCEP---LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGG 210
Query: 234 RWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVS 270
+ + PD ++V G + ++ G K+ H V +
Sbjct: 211 AFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAA 247
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 182 NCLPGSSYLRMNRYPPCPPSFEV----LGLIPHTDSDFLTILYQDHVG----GLQLKKDG 233
+C P LR +P P L + PH D +T++ Q LQ + G
Sbjct: 154 DCEP---LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGG 210
Query: 234 RWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVS 270
+ + PD ++V G + ++ G K+ H V +
Sbjct: 211 AFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAA 247
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 182 NCLPGSSYLRMNRYPPCPPSFEV----LGLIPHTDSDFLTILYQDHVG----GLQLKKDG 233
+C P LR +P P L + PH D +T++ Q LQ + G
Sbjct: 154 DCEP---LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGG 210
Query: 234 RWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVS 270
+ + PD ++V G + ++ G K+ H V +
Sbjct: 211 AFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAA 247
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 182 NCLPGSSYLRMNRYPPCPPSFEV----LGLIPHTDSDFLTILYQDHVG----GLQLKKDG 233
+C P LR +P P L + PH D +T++ Q LQ + G
Sbjct: 154 DCEP---LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGG 210
Query: 234 RWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVS 270
+ + PD ++V G + ++ G K+ H V +
Sbjct: 211 AFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAA 247
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 182 NCLPGSSYLRMNRYPPCPPSFEV----LGLIPHTDSDFLTILYQDHVG----GLQLKKDG 233
+C P LR +P P L + PH D +T++ Q LQ + G
Sbjct: 174 DCEP---LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGG 230
Query: 234 RWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVS 270
+ + PD ++V G + ++ G K+ H V +
Sbjct: 231 AFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAA 267
>pdb|2FGZ|A Chain A, Crystal Structure Analysis Of Apo Pullulanase From
Klebsiella Pneumoniae
Length = 926
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 20/103 (19%)
Query: 120 LKQFLWSEALHI---PVTDISRLGDESNNPRSTIGLFSTKAANLAERLAEYLARNLKIKS 176
LKQ S HI PV D++ T+ FS K A++ + + N +KS
Sbjct: 306 LKQLSASGVTHIELLPVFDLA-----------TVNEFSDKVADIQQPFSRLCEVNSAVKS 354
Query: 177 SYFRENCLPGSSY------LRMNRYPPCPPSFEVLGLIPHTDS 213
S F C GS+ L+ N P + L+ TDS
Sbjct: 355 SEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDS 397
>pdb|2FH8|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Isomaltose
Length = 922
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 20/103 (19%)
Query: 120 LKQFLWSEALHI---PVTDISRLGDESNNPRSTIGLFSTKAANLAERLAEYLARNLKIKS 176
LKQ S HI PV D++ T+ FS K A++ + + N +KS
Sbjct: 302 LKQLSASGVTHIELLPVFDLA-----------TVNEFSDKVADIQQPFSRLCEVNSAVKS 350
Query: 177 SYFRENCLPGSSY------LRMNRYPPCPPSFEVLGLIPHTDS 213
S F C GS+ L+ N P + L+ TDS
Sbjct: 351 SEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDS 393
>pdb|2FH6|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Glucose
Length = 920
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 20/103 (19%)
Query: 120 LKQFLWSEALHI---PVTDISRLGDESNNPRSTIGLFSTKAANLAERLAEYLARNLKIKS 176
LKQ S HI PV D++ T+ FS K A++ + + N +KS
Sbjct: 300 LKQLSASGVTHIELLPVFDLA-----------TVNEFSDKVADIQQPFSRLCEVNSAVKS 348
Query: 177 SYFRENCLPGSSY------LRMNRYPPCPPSFEVLGLIPHTDS 213
S F C GS+ L+ N P + L+ TDS
Sbjct: 349 SEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDS 391
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 20/103 (19%)
Query: 120 LKQFLWSEALHI---PVTDISRLGDESNNPRSTIGLFSTKAANLAERLAEYLARNLKIKS 176
LKQ S HI PV D++ T+ FS K A++ + + N +KS
Sbjct: 463 LKQLSASGVTHIELLPVFDLA-----------TVNEFSDKVADIQQPFSRLCEVNSAVKS 511
Query: 177 SYFRENCLPGSSY------LRMNRYPPCPPSFEVLGLIPHTDS 213
S F C GS+ L+ N P + L+ TDS
Sbjct: 512 SEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDS 554
>pdb|2G8G|A Chain A, Structurally Mapping The Diverse Phenotype Of Adeno-
Associated Virus Serotype 4
Length = 524
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 177 SYFRENCLPGSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTILYQDHVGGLQLKKDGRWL 236
S F++N LPG S + +++ IP T SD L I Y+ H DGRW
Sbjct: 256 SNFKKNWLPGPSIKQQGFSKTANQNYK----IPATGSDSL-IKYETHS-----TLDGRWS 305
Query: 237 SVKPNPDVLIVNVGD 251
++ P P + D
Sbjct: 306 ALTPGPPMATAGPAD 320
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 15 LFHNSTAKANDERLVAVDEECQLPSIDLARLNFRSFDKWIEEMA 58
+FH+ ++ + A+ C+ P D+ RL R D W+EE A
Sbjct: 495 IFHDVLSRMELSDIGALHLICRTP--DMERLTVRKTDSWVEEEA 536
>pdb|1VT4|I Chain I, Structure Of The Drosophila Apoptosome
pdb|1VT4|J Chain J, Structure Of The Drosophila Apoptosome
pdb|1VT4|K Chain K, Structure Of The Drosophila Apoptosome
pdb|1VT4|L Chain L, Structure Of The Drosophila Apoptosome
pdb|1VT4|M Chain M, Structure Of The Drosophila Apoptosome
pdb|1VT4|N Chain N, Structure Of The Drosophila Apoptosome
pdb|1VT4|O Chain O, Structure Of The Drosophila Apoptosome
pdb|1VT4|P Chain P, Structure Of The Drosophila Apoptosome
pdb|3IZ8|A Chain A, Structure Of The Drosophila Apoptosome
pdb|3IZ8|B Chain B, Structure Of The Drosophila Apoptosome
pdb|3IZ8|C Chain C, Structure Of The Drosophila Apoptosome
pdb|3IZ8|D Chain D, Structure Of The Drosophila Apoptosome
pdb|3IZ8|E Chain E, Structure Of The Drosophila Apoptosome
pdb|3IZ8|F Chain F, Structure Of The Drosophila Apoptosome
pdb|3IZ8|G Chain G, Structure Of The Drosophila Apoptosome
pdb|3IZ8|H Chain H, Structure Of The Drosophila Apoptosome
Length = 1221
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 284 CPSYEAVIESTENIIEPAIYRKF 306
C +IES+ N++EPA YRK
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKM 374
>pdb|3BGA|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
pdb|3BGA|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
Length = 1010
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 47/124 (37%), Gaps = 31/124 (25%)
Query: 225 GGLQLKKDGRWLSV------------KPNPDVLIVNVGDLFQALSNGV--------YKSV 264
G L KD WL+ K +P ++I + G+ NG+ KSV
Sbjct: 425 GPASLAKDSTWLTAHXDRTHRXYERSKNHPAIVIWSQGN---EAGNGINFERTYDWLKSV 481
Query: 265 EH-RVVSHPKVERYSVAYFYCPSYEAVIESTENIIEPAIYRKFSFREYKQQIQEDVRATG 323
E R V + + E YC Y +V E + + IYR F EY + A G
Sbjct: 482 EKGRPVQYERAELNYNTDIYCRXYRSVDEIKAYVGKKDIYRPFILCEY-------LHAXG 534
Query: 324 NKVG 327
N G
Sbjct: 535 NSCG 538
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,960,778
Number of Sequences: 62578
Number of extensions: 386620
Number of successful extensions: 866
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 33
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)