Query 040560
Match_columns 454
No_of_seqs 295 out of 644
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:23:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3czx_A Putative N-acetylmuramo 67.2 5.6 0.00019 36.0 4.7 45 306-350 36-84 (182)
2 4a5o_A Bifunctional protein fo 60.8 14 0.00047 36.2 6.4 72 286-364 160-233 (286)
3 3p2o_A Bifunctional protein fo 56.3 20 0.00067 35.1 6.6 72 286-364 159-232 (285)
4 3l07_A Bifunctional protein fo 55.2 21 0.0007 34.9 6.5 72 286-364 160-233 (285)
5 3tnl_A Shikimate dehydrogenase 55.0 58 0.002 31.9 9.9 94 288-387 179-282 (315)
6 3ngx_A Bifunctional protein fo 54.3 24 0.00081 34.3 6.8 72 286-364 149-222 (276)
7 4a26_A Putative C-1-tetrahydro 52.2 18 0.00063 35.5 5.7 74 286-364 164-239 (300)
8 3t4e_A Quinate/shikimate dehyd 51.8 62 0.0021 31.7 9.5 94 288-387 173-276 (312)
9 1jwq_A N-acetylmuramoyl-L-alan 50.2 18 0.0006 32.6 4.9 45 306-350 36-86 (179)
10 1a4i_A Methylenetetrahydrofola 48.6 17 0.00057 35.9 4.7 72 286-364 164-237 (301)
11 2zuv_A Lacto-N-biose phosphory 47.1 7.2 0.00025 42.6 2.0 124 286-422 437-603 (759)
12 3ne8_A N-acetylmuramoyl-L-alan 44.2 25 0.00086 33.1 5.1 43 308-350 40-88 (234)
13 2q62_A ARSH; alpha/beta, flavo 42.0 42 0.0014 31.6 6.3 56 286-342 33-104 (247)
14 1b0a_A Protein (fold bifunctio 41.4 45 0.0015 32.6 6.5 72 286-364 158-231 (288)
15 2amj_A Modulator of drug activ 40.8 40 0.0014 30.5 5.8 37 306-342 38-76 (204)
16 1i1q_B Anthranilate synthase c 40.7 25 0.00086 31.3 4.3 52 288-343 1-55 (192)
17 4dio_A NAD(P) transhydrogenase 39.6 43 0.0015 34.2 6.3 35 330-364 269-312 (405)
18 2fzv_A Putative arsenical resi 39.5 46 0.0016 32.1 6.2 56 286-342 57-129 (279)
19 1edz_A 5,10-methylenetetrahydr 38.7 29 0.00099 34.4 4.7 75 286-364 176-275 (320)
20 3don_A Shikimate dehydrogenase 36.4 66 0.0023 30.8 6.8 78 306-387 131-229 (277)
21 3l4e_A Uncharacterized peptida 36.0 59 0.002 29.7 6.1 62 287-348 27-91 (206)
22 3p2y_A Alanine dehydrogenase/p 35.0 45 0.0015 33.8 5.5 34 331-364 260-302 (381)
23 3h11_A CAsp8 and FADD-like apo 34.5 41 0.0014 32.4 4.9 65 286-357 42-118 (272)
24 3rpe_A MDAB, modulator of drug 34.5 47 0.0016 30.8 5.2 38 305-342 50-89 (218)
25 3qay_A Endolysin; amidase A/B 34.3 41 0.0014 30.1 4.6 42 307-348 38-89 (180)
26 4b4u_A Bifunctional protein fo 31.9 1.2E+02 0.0042 29.7 7.9 71 286-363 178-250 (303)
27 2yxb_A Coenzyme B12-dependent 31.3 98 0.0033 27.0 6.5 56 285-340 16-73 (161)
28 2c2x_A Methylenetetrahydrofola 30.6 45 0.0015 32.4 4.5 72 286-364 157-232 (281)
29 2h54_A Caspase-1; allosteric s 30.2 63 0.0021 29.1 5.1 30 302-332 65-94 (178)
30 3u7q_A Nitrogenase molybdenum- 30.0 44 0.0015 34.8 4.6 97 285-385 218-318 (492)
31 2dko_A Caspase-3; low barrier 27.8 77 0.0026 27.5 5.1 52 303-357 42-104 (146)
32 2pjk_A 178AA long hypothetical 27.4 1.6E+02 0.0056 26.0 7.4 67 285-351 13-96 (178)
33 2j32_A Caspase-3; Pro-caspase3 26.8 81 0.0028 29.7 5.5 52 303-357 42-104 (250)
34 1qtn_A Caspase-8; apoptosis, d 26.1 1.3E+02 0.0045 26.5 6.5 52 303-357 56-118 (164)
35 2fi0_A Conserved domain protei 26.0 45 0.0015 25.9 3.0 21 299-319 58-78 (81)
36 1psw_A ADP-heptose LPS heptosy 25.8 1.5E+02 0.0053 27.9 7.4 41 324-366 249-289 (348)
37 2ql9_A Caspase-7; cysteine pro 25.3 73 0.0025 28.6 4.6 52 303-357 70-132 (173)
38 1m72_A Caspase-1; caspase, cys 24.9 90 0.0031 29.8 5.5 52 303-357 57-119 (272)
39 3aek_B Light-independent proto 24.7 34 0.0012 36.0 2.6 100 286-387 152-257 (525)
40 3lp6_A Phosphoribosylaminoimid 24.4 1.3E+02 0.0044 27.2 6.0 60 285-345 5-71 (174)
41 3ezx_A MMCP 1, monomethylamine 23.9 92 0.0031 28.5 5.2 59 285-343 90-149 (215)
42 1xmp_A PURE, phosphoribosylami 23.7 1.1E+02 0.0037 27.6 5.4 60 285-345 9-75 (170)
43 3rht_A (gatase1)-like protein; 22.7 37 0.0013 32.5 2.2 73 287-364 4-86 (259)
44 3sir_A Caspase; hydrolase; 2.6 22.5 1.1E+02 0.0036 29.0 5.4 53 302-357 44-107 (259)
45 3rfq_A Pterin-4-alpha-carbinol 22.3 1E+02 0.0036 27.8 5.1 70 285-354 28-107 (185)
46 1l9x_A Gamma-glutamyl hydrolas 22.3 1.4E+02 0.0046 29.0 6.3 61 285-345 28-95 (315)
47 1x13_A NAD(P) transhydrogenase 22.2 83 0.0028 31.7 4.9 34 331-364 250-292 (401)
48 3pdi_B Nitrogenase MOFE cofact 22.1 47 0.0016 34.2 3.0 98 285-386 167-288 (458)
49 1mkz_A Molybdenum cofactor bio 22.1 2.2E+02 0.0076 24.9 7.2 67 285-351 8-84 (172)
50 3h9u_A Adenosylhomocysteinase; 21.6 1E+02 0.0035 31.8 5.4 76 287-367 211-301 (436)
51 1ccw_A Protein (glutamate muta 21.5 1.1E+02 0.0039 25.7 4.9 54 287-340 3-58 (137)
52 3qhp_A Type 1 capsular polysac 21.4 2E+02 0.0069 23.5 6.5 50 287-343 32-81 (166)
53 1xov_A PLY protein, plypsa; al 21.2 51 0.0017 32.6 3.0 40 308-347 47-94 (326)
54 1mio_A Nitrogenase molybdenum 20.9 54 0.0019 34.5 3.3 96 286-385 205-304 (533)
55 4grd_A N5-CAIR mutase, phospho 20.3 1.9E+02 0.0065 26.1 6.2 60 285-345 10-76 (173)
56 2nn3_C Caspase-1; cysteine pro 20.3 1.3E+02 0.0046 29.3 5.8 52 303-357 85-147 (310)
No 1
>3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI, MCSG, protein structure initiative; 1.60A {Neisseria meningitidis MC58}
Probab=67.16 E-value=5.6 Score=36.01 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=35.0
Q ss_pred HHHHHHHHc-CCEEEEEeC---CCCHHHHHHHHccCCEEEEechhhhhh
Q 040560 306 KIARMARRL-GFKVVVAEA---DMRLSRFARIVNSCDVLLGVHGAGLAN 350 (454)
Q Consensus 306 ev~~~l~~~-gf~V~~~~~---~~s~~eq~~l~~~advlVGvHGAgLtn 350 (454)
+|.+.|++. |++|+.... ..++.+-+++.++||++|++|--+..|
T Consensus 36 ~l~~~L~~~~G~~V~~tR~~d~~~~L~~R~~~an~adlfISIH~Na~~~ 84 (182)
T 3czx_A 36 IVASILRNDYGLTVKTDGTGKGNMPLRDAVKLIRGSDVAIEFHTNAAAN 84 (182)
T ss_dssp HHHHHHHHHHCCCEEESCSSCCCCCHHHHHHHHHTCSEEEEECCBCCSS
T ss_pred HHHHHHhhcCCcEEEEecCCCccCCHHHHHHHhhCCCEEEEeccCCCCC
Confidence 344566677 999986654 468999999999999999999766554
No 2
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=60.83 E-value=14 Score=36.17 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=52.5
Q ss_pred CCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEEEechhh-hhhhcccCCCcEEEEE
Q 040560 286 KMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLLGVHGAG-LANIVFLPENAVFIQV 363 (454)
Q Consensus 286 ~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pga~vIEi 363 (454)
..-++++|.|.+. . -.-+..+|...|.+|.+..- +.++++ .+.+|||+|+.-|+. +-..=|.+||++||.+
T Consensus 160 ~Gk~vvVvGrs~i---V-G~plA~lL~~~gAtVtv~hs~T~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDv 232 (286)
T 4a5o_A 160 YGMDAVVVGASNI---V-GRPMALELLLGGCTVTVTHRFTRDLAD---HVSRADLVVVAAGKPGLVKGEWIKEGAIVIDV 232 (286)
T ss_dssp TTCEEEEECTTST---T-HHHHHHHHHHTTCEEEEECTTCSCHHH---HHHTCSEEEECCCCTTCBCGGGSCTTCEEEEC
T ss_pred CCCEEEEECCCch---h-HHHHHHHHHHCCCeEEEEeCCCcCHHH---HhccCCEEEECCCCCCCCCHHHcCCCeEEEEe
Confidence 3458899998751 1 12456667777999988875 455654 467899999988865 6566678999999987
Q ss_pred e
Q 040560 364 V 364 (454)
Q Consensus 364 ~ 364 (454)
-
T Consensus 233 g 233 (286)
T 4a5o_A 233 G 233 (286)
T ss_dssp C
T ss_pred c
Confidence 4
No 3
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=56.27 E-value=20 Score=35.08 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=52.0
Q ss_pred CCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEEEechhh-hhhhcccCCCcEEEEE
Q 040560 286 KMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLLGVHGAG-LANIVFLPENAVFIQV 363 (454)
Q Consensus 286 ~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pga~vIEi 363 (454)
..-++++|.|.+. + -.-+..+|...|..|.+..- +.++.+ .+.+|||+|+.=|+. +-..=|++||++||.+
T Consensus 159 ~Gk~vvVvGrs~i---V-G~p~A~lL~~~gAtVtv~h~~t~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDV 231 (285)
T 3p2o_A 159 EGKDAVIIGASNI---V-GRPMATMLLNAGATVSVCHIKTKDLSL---YTRQADLIIVAAGCVNLLRSDMVKEGVIVVDV 231 (285)
T ss_dssp TTCEEEEECCCTT---T-HHHHHHHHHHTTCEEEEECTTCSCHHH---HHTTCSEEEECSSCTTCBCGGGSCTTEEEEEC
T ss_pred CCCEEEEECCCch---H-HHHHHHHHHHCCCeEEEEeCCchhHHH---HhhcCCEEEECCCCCCcCCHHHcCCCeEEEEe
Confidence 3458899998751 1 12456667778999988875 445554 578999999988864 5555678999999987
Q ss_pred e
Q 040560 364 V 364 (454)
Q Consensus 364 ~ 364 (454)
-
T Consensus 232 g 232 (285)
T 3p2o_A 232 G 232 (285)
T ss_dssp C
T ss_pred c
Confidence 4
No 4
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=55.24 E-value=21 Score=34.92 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=51.3
Q ss_pred CCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEEEechhh-hhhhcccCCCcEEEEE
Q 040560 286 KMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLLGVHGAG-LANIVFLPENAVFIQV 363 (454)
Q Consensus 286 ~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pga~vIEi 363 (454)
..-++++|.|.+. + -.-+..+|...|.+|.+..- +.++.+ .+.+|||+|+.=|+. +-..=|++||++||.+
T Consensus 160 ~Gk~vvVIG~s~i---V-G~p~A~lL~~~gAtVtv~hs~t~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDv 232 (285)
T 3l07_A 160 EGAYAVVVGASNV---V-GKPVSQLLLNAKATVTTCHRFTTDLKS---HTTKADILIVAVGKPNFITADMVKEGAVVIDV 232 (285)
T ss_dssp TTCEEEEECCCTT---T-HHHHHHHHHHTTCEEEEECTTCSSHHH---HHTTCSEEEECCCCTTCBCGGGSCTTCEEEEC
T ss_pred CCCEEEEECCCch---h-HHHHHHHHHHCCCeEEEEeCCchhHHH---hcccCCEEEECCCCCCCCCHHHcCCCcEEEEe
Confidence 3457889988751 1 12456667777999988765 445554 578999999988864 5555567999999987
Q ss_pred e
Q 040560 364 V 364 (454)
Q Consensus 364 ~ 364 (454)
-
T Consensus 233 g 233 (285)
T 3l07_A 233 G 233 (285)
T ss_dssp C
T ss_pred c
Confidence 4
No 5
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=54.97 E-value=58 Score=31.89 Aligned_cols=94 Identities=14% Similarity=0.166 Sum_probs=60.8
Q ss_pred cEEEEEEeCCCccccCHHHHHHHHHH-cCCEEEEEeCCCCHHHHHHHHccCCEEEEechhhhhh---------hcccCCC
Q 040560 288 PRLLIISRKRTRTFTNASKIARMARR-LGFKVVVAEADMRLSRFARIVNSCDVLLGVHGAGLAN---------IVFLPEN 357 (454)
Q Consensus 288 prl~~i~R~~~R~i~Ne~ev~~~l~~-~gf~V~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn---------~lFl~pg 357 (454)
.++++++|+.. .....+++.+.+.+ .|.++.+.+. .+..+--+.+..+|++|..-.+|+.. .-+++++
T Consensus 179 ~~V~i~nR~~~-~~~~a~~la~~~~~~~~~~~~~~~~-~~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~ 256 (315)
T 3tnl_A 179 KEISIFNRKDD-FYANAEKTVEKINSKTDCKAQLFDI-EDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPE 256 (315)
T ss_dssp SEEEEEECSST-THHHHHHHHHHHHHHSSCEEEEEET-TCHHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGCCTT
T ss_pred CEEEEEECCCc-hHHHHHHHHHHhhhhcCCceEEecc-chHHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHcCCC
Confidence 37888888632 23445566655544 4777766553 12333345678999999888777652 1246889
Q ss_pred cEEEEEeeCccccccccchHhHHhhCCCeE
Q 040560 358 AVFIQVVPIAVEWLARDYFEEPSKAMKLRY 387 (454)
Q Consensus 358 a~vIEi~P~g~~~~~~~~y~~~A~~~gl~Y 387 (454)
.+|++++- .+ ..+.|-..|+..|.+.
T Consensus 257 ~~V~DlvY---~P-~~T~ll~~A~~~G~~~ 282 (315)
T 3tnl_A 257 LIVSDVVY---KP-TKTRLLEIAEEQGCQT 282 (315)
T ss_dssp CEEEESCC---SS-SSCHHHHHHHHTTCEE
T ss_pred CEEEEecc---CC-CCCHHHHHHHHCCCeE
Confidence 99999873 11 2456888899999865
No 6
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=54.29 E-value=24 Score=34.34 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=52.1
Q ss_pred CCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEEEechhh-hhhhcccCCCcEEEEE
Q 040560 286 KMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLLGVHGAG-LANIVFLPENAVFIQV 363 (454)
Q Consensus 286 ~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pga~vIEi 363 (454)
..-++++|.|++. =-.-+..+|.+.|.+|.+..- +.++.+. +++|||+|+.=|+. +-..=|++||++||-+
T Consensus 149 ~Gk~vvVvG~s~i----VG~plA~lL~~~gAtVtv~~~~t~~L~~~---~~~ADIVI~Avg~p~~I~~~~vk~GavVIDv 221 (276)
T 3ngx_A 149 HENTVTIVNRSPV----VGRPLSMMLLNRNYTVSVCHSKTKDIGSM---TRSSKIVVVAVGRPGFLNREMVTPGSVVIDV 221 (276)
T ss_dssp CSCEEEEECCCTT----THHHHHHHHHHTTCEEEEECTTCSCHHHH---HHHSSEEEECSSCTTCBCGGGCCTTCEEEEC
T ss_pred CCCEEEEEcCChH----HHHHHHHHHHHCCCeEEEEeCCcccHHHh---hccCCEEEECCCCCccccHhhccCCcEEEEe
Confidence 3457889998741 112456677778999988875 5566654 67899999988874 5556678999999986
Q ss_pred e
Q 040560 364 V 364 (454)
Q Consensus 364 ~ 364 (454)
-
T Consensus 222 g 222 (276)
T 3ngx_A 222 G 222 (276)
T ss_dssp C
T ss_pred c
Confidence 3
No 7
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=52.22 E-value=18 Score=35.54 Aligned_cols=74 Identities=12% Similarity=0.232 Sum_probs=51.7
Q ss_pred CCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEEEechhh-hhhhcccCCCcEEEEE
Q 040560 286 KMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLLGVHGAG-LANIVFLPENAVFIQV 363 (454)
Q Consensus 286 ~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pga~vIEi 363 (454)
..-++++|.|.+. . -.-+..+|.+.|.+|.+..- +.++. ..+.+.+|||+|+.=|.. +-..=|++||++||.+
T Consensus 164 ~Gk~vvVIG~s~i---V-G~p~A~lL~~~gAtVtv~~~~T~~l~-l~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDv 238 (300)
T 4a26_A 164 AGKRAVVLGRSNI---V-GAPVAALLMKENATVTIVHSGTSTED-MIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDV 238 (300)
T ss_dssp TTCEEEEECCCTT---T-HHHHHHHHHHTTCEEEEECTTSCHHH-HHHHHHTCSEEEECSCCTTCBCGGGSCTTCEEEEC
T ss_pred CCCEEEEECCCch---H-HHHHHHHHHHCCCeEEEEeCCCCCch-hhhhhccCCEEEECCCCCCCCcHHhcCCCcEEEEE
Confidence 3457889988751 1 12456667777999988874 33343 015688999999988865 5555678999999987
Q ss_pred e
Q 040560 364 V 364 (454)
Q Consensus 364 ~ 364 (454)
-
T Consensus 239 g 239 (300)
T 4a26_A 239 G 239 (300)
T ss_dssp C
T ss_pred e
Confidence 4
No 8
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=51.84 E-value=62 Score=31.65 Aligned_cols=94 Identities=16% Similarity=0.205 Sum_probs=60.5
Q ss_pred cEEEEEEeCCCccccCHHHHHHHHHH-cCCEEEEEeCCCCHHHHHHHHccCCEEEEechhhhh---h------hcccCCC
Q 040560 288 PRLLIISRKRTRTFTNASKIARMARR-LGFKVVVAEADMRLSRFARIVNSCDVLLGVHGAGLA---N------IVFLPEN 357 (454)
Q Consensus 288 prl~~i~R~~~R~i~Ne~ev~~~l~~-~gf~V~~~~~~~s~~eq~~l~~~advlVGvHGAgLt---n------~lFl~pg 357 (454)
.++++++|+..| ....+++.+.+.+ .|..+...+. .++.+..+.+..+|++|..-.+||. . .-+++++
T Consensus 173 ~~v~v~nRt~~~-~~~a~~la~~~~~~~~~~v~~~~~-~~l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~ 250 (312)
T 3t4e_A 173 KEIKLFNRKDDF-FEKAVAFAKRVNENTDCVVTVTDL-ADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPE 250 (312)
T ss_dssp SEEEEEECSSTH-HHHHHHHHHHHHHHSSCEEEEEET-TCHHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGSCTT
T ss_pred CEEEEEECCCch-HHHHHHHHHHhhhccCcceEEech-HhhhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHcCCC
Confidence 378888886432 3445556655543 4777766653 2332224557789999988888872 1 1246788
Q ss_pred cEEEEEeeCccccccccchHhHHhhCCCeE
Q 040560 358 AVFIQVVPIAVEWLARDYFEEPSKAMKLRY 387 (454)
Q Consensus 358 a~vIEi~P~g~~~~~~~~y~~~A~~~gl~Y 387 (454)
.+|++++- .+ ..+.|-..|+..|.+.
T Consensus 251 ~~v~D~vY---~P-~~T~ll~~A~~~G~~~ 276 (312)
T 3t4e_A 251 LLVTECVY---NP-HMTKLLQQAQQAGCKT 276 (312)
T ss_dssp CEEEECCC---SS-SSCHHHHHHHHTTCEE
T ss_pred CEEEEecc---CC-CCCHHHHHHHHCCCeE
Confidence 99999873 11 2356888899999765
No 9
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=50.20 E-value=18 Score=32.59 Aligned_cols=45 Identities=13% Similarity=0.363 Sum_probs=33.2
Q ss_pred HHHHHHHHc-CCEEEEEeC---CCCHHHHHHHHc--cCCEEEEechhhhhh
Q 040560 306 KIARMARRL-GFKVVVAEA---DMRLSRFARIVN--SCDVLLGVHGAGLAN 350 (454)
Q Consensus 306 ev~~~l~~~-gf~V~~~~~---~~s~~eq~~l~~--~advlVGvHGAgLtn 350 (454)
+|.+.|++. |++|+.... ..++.+-+++.+ +||++|++|--+..|
T Consensus 36 ~l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSiH~Na~~~ 86 (179)
T 1jwq_A 36 KVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANSSGS 86 (179)
T ss_dssp HHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEEEECCSS
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEEccCCCCC
Confidence 344556677 999976554 468888888876 699999999766543
No 10
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=48.63 E-value=17 Score=35.88 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=51.0
Q ss_pred CCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEEEechhh-hhhhcccCCCcEEEEE
Q 040560 286 KMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLLGVHGAG-LANIVFLPENAVFIQV 363 (454)
Q Consensus 286 ~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pga~vIEi 363 (454)
..-++++|.|++. +. .-+...|...|..|.+... +.++. +.+++|||+|+.-|.. +-..=|++||++||-+
T Consensus 164 ~gk~vvVIG~s~i---VG-~p~A~lL~~~gAtVtv~hs~t~~L~---~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDV 236 (301)
T 1a4i_A 164 AGRHAVVVGRSKI---VG-APMHDLLLWNNATVTTCHSKTAHLD---EEVNKGDILVVATGQPEMVKGEWIKPGAIVIDC 236 (301)
T ss_dssp TTCEEEEECCCTT---TH-HHHHHHHHHTTCEEEEECTTCSSHH---HHHTTCSEEEECCCCTTCBCGGGSCTTCEEEEC
T ss_pred CCCEEEEECCCch---HH-HHHHHHHHhCCCeEEEEECCcccHH---HHhccCCEEEECCCCcccCCHHHcCCCcEEEEc
Confidence 4568899998741 11 2355666777999988864 33444 4568999999988875 5555567999999986
Q ss_pred e
Q 040560 364 V 364 (454)
Q Consensus 364 ~ 364 (454)
-
T Consensus 237 g 237 (301)
T 1a4i_A 237 G 237 (301)
T ss_dssp C
T ss_pred c
Confidence 4
No 11
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=47.06 E-value=7.2 Score=42.61 Aligned_cols=124 Identities=15% Similarity=0.233 Sum_probs=77.4
Q ss_pred CCcEEEEEEeCC-Ccccc--------------CHHHHHHHHHHcCCEEEEEeCCCCHHHHH--HHHccCCEEEEechhhh
Q 040560 286 KMPRLLIISRKR-TRTFT--------------NASKIARMARRLGFKVVVAEADMRLSRFA--RIVNSCDVLLGVHGAGL 348 (454)
Q Consensus 286 ~~prl~~i~R~~-~R~i~--------------Ne~ev~~~l~~~gf~V~~~~~~~s~~eq~--~l~~~advlVGvHGAgL 348 (454)
...++-++.=-| .|... ...=++++|...+++|..+. +.+.. ......|||| =+|.
T Consensus 437 ~~~kVAVLnsWGklRSW~~~~vaHak~~kq~ysy~GilEALsg~~~dV~FIs----fdDI~e~e~L~d~DVII---n~G~ 509 (759)
T 2zuv_A 437 GELNVAILNSWGKMRSWMAFTVAHALPNKQTYSYYGILESLSGMRVNVRFIS----FDDVLAHGIDSDIDVII---NGGP 509 (759)
T ss_dssp CCSEEEEEESSGGGGTTTTTCSSTTCCCTTTHHHHHHHHHHHTSSSEEEEEE----HHHHHHHCCCTTCCEEE---EEEC
T ss_pred cCceEEEEecCCCCcccccccccccccccccccHHHHHHHHhcCCCceEEec----HHHhccccccccCCEEE---ecCc
Confidence 346777777554 23333 22338899999999997665 33332 3578999999 6677
Q ss_pred hhhcccCC------------------CcEEEEEeeC-cc-ccccccchHhHHhhCCCeEEEEEeccccccccccCC----
Q 040560 349 ANIVFLPE------------------NAVFIQVVPI-AV-EWLARDYFEEPSKAMKLRYLEYKIKAEESTLIQQYP---- 404 (454)
Q Consensus 349 tn~lFl~p------------------ga~vIEi~P~-g~-~~~~~~~y~~~A~~~gl~Y~~y~~~~~EssL~~~y~---- 404 (454)
+|..|+.+ |..+|=+--+ .+ ++ ....|..+|..+|++...+.- .. ..+|+
T Consensus 510 A~TalSgg~~W~~p~~~~aLR~fV~~GGgLIgVGepSsfqg~-g~gryFqLADVLGVd~e~g~d-lp----~gkY~~~~~ 583 (759)
T 2zuv_A 510 VDTAFTGGDVWTNPKLVETVRAWVRGGGAFVGVGEPSSAPRF-QTGRFFQLADVIGVDEERYQT-LS----VDKYFPPVV 583 (759)
T ss_dssp TTSTTTCGGGGGCHHHHHHHHHHHHTTCEEEEEESTTEEEEE-ETTEEETTHHHHSEEECCSSC-TT----BCCBCCCCC
T ss_pred chhcccCccccCCHHHHHHHHHHHHcCCcEEEeCCccccccc-cCcccccHHhhcCcccccCCc-CC----CCccccccC
Confidence 77777766 6777776633 22 22 233445599999988765431 11 34554
Q ss_pred CCCccccCch--hhhhcChh
Q 040560 405 IDHQVVRDPS--SILKMGWS 422 (454)
Q Consensus 405 ~dh~~~~dP~--~~~~~gW~ 422 (454)
.+|+++.|-. ...++||+
T Consensus 584 ~~HfIl~di~~~~~~~~gwe 603 (759)
T 2zuv_A 584 PDHFITADVPVDPAAREAWE 603 (759)
T ss_dssp CSCTTTTTCCCCHHHHHHHH
T ss_pred CCCceecccccccccccccc
Confidence 3799887532 22467884
No 12
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=44.19 E-value=25 Score=33.07 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=31.6
Q ss_pred HHHHHHcC-CEEEEEeC---CCCHHHHHHHHc--cCCEEEEechhhhhh
Q 040560 308 ARMARRLG-FKVVVAEA---DMRLSRFARIVN--SCDVLLGVHGAGLAN 350 (454)
Q Consensus 308 ~~~l~~~g-f~V~~~~~---~~s~~eq~~l~~--~advlVGvHGAgLtn 350 (454)
.+.|++.| ++|+.... ..++.+-+++.+ .||++|++|--+..+
T Consensus 40 ~~~L~~~g~~~V~~tR~~D~~~~l~~R~~~An~~~adlfiSiH~Na~~~ 88 (234)
T 3ne8_A 40 RDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDV 88 (234)
T ss_dssp HHHHHHSSSEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEECCCCSC
T ss_pred HHHHHhCCCcEEEEeCCCCCcCCHHHHHHHHHhhCCCEEEEEecCCCCC
Confidence 34455567 99876554 468988888877 799999999766543
No 13
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=42.01 E-value=42 Score=31.60 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=38.0
Q ss_pred CCcEEEEEEeCCCccccCHHH----HHHHHHHcCCEEEEEeC-CCC-----------HHHHHHHHccCCEEEE
Q 040560 286 KMPRLLIISRKRTRTFTNASK----IARMARRLGFKVVVAEA-DMR-----------LSRFARIVNSCDVLLG 342 (454)
Q Consensus 286 ~~prl~~i~R~~~R~i~Ne~e----v~~~l~~~gf~V~~~~~-~~s-----------~~eq~~l~~~advlVG 342 (454)
...++++|.=. .|+=-|-.. +++.+++.|.+|.+++. +++ +.+.++.+..||.+|=
T Consensus 33 ~~mkIliI~GS-~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~ 104 (247)
T 2q62_A 33 HRPRILILYGS-LRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVW 104 (247)
T ss_dssp SCCEEEEEECC-CCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEE
T ss_pred CCCeEEEEEcc-CCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEE
Confidence 45678888733 233333333 34445556999998887 665 7888899999999874
No 14
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=41.37 E-value=45 Score=32.58 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=50.8
Q ss_pred CCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEEEechhh-hhhhcccCCCcEEEEE
Q 040560 286 KMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLLGVHGAG-LANIVFLPENAVFIQV 363 (454)
Q Consensus 286 ~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pga~vIEi 363 (454)
..-++++|.|++. + -.-+...|...|..|.+... +.++.+ .+++||++|+.=|+. +-..=|.+||++||-+
T Consensus 158 ~gk~vvVIG~s~i---V-G~p~A~lL~~~gAtVtv~hs~t~~L~~---~~~~ADIVI~Avg~p~lI~~~~vk~GavVIDV 230 (288)
T 1b0a_A 158 FGLNAVVIGASNI---V-GRPMSMELLLAGCTTTVTHRFTKNLRH---HVENADLLIVAVGKPGFIPGDWIKEGAIVIDV 230 (288)
T ss_dssp TTCEEEEECCCTT---T-HHHHHHHHHTTTCEEEEECSSCSCHHH---HHHHCSEEEECSCCTTCBCTTTSCTTCEEEEC
T ss_pred CCCEEEEECCChH---H-HHHHHHHHHHCCCeEEEEeCCchhHHH---HhccCCEEEECCCCcCcCCHHHcCCCcEEEEc
Confidence 4568899988741 1 12355667777999988875 445554 456799999988866 5444467999999986
Q ss_pred e
Q 040560 364 V 364 (454)
Q Consensus 364 ~ 364 (454)
-
T Consensus 231 g 231 (288)
T 1b0a_A 231 G 231 (288)
T ss_dssp C
T ss_pred c
Confidence 4
No 15
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=40.80 E-value=40 Score=30.48 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCEEEEEeC--CCCHHHHHHHHccCCEEEE
Q 040560 306 KIARMARRLGFKVVVAEA--DMRLSRFARIVNSCDVLLG 342 (454)
Q Consensus 306 ev~~~l~~~gf~V~~~~~--~~s~~eq~~l~~~advlVG 342 (454)
++++.+++.|.+|.+++. +-++.+..+.+..||.+|=
T Consensus 38 ~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~ 76 (204)
T 2amj_A 38 VADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIW 76 (204)
T ss_dssp HHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEE
Confidence 444555666999998887 4678888999999998773
No 16
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=40.75 E-value=25 Score=31.28 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=33.0
Q ss_pred cEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHccCC---EEEEe
Q 040560 288 PRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEADMRLSRFARIVNSCD---VLLGV 343 (454)
Q Consensus 288 prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~~~s~~eq~~l~~~ad---vlVGv 343 (454)
|++++|+-.+ .+ ...+++++++.|.+++++..+.+.++....+...+ ++++.
T Consensus 1 ~~i~iiDn~~--s~--~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~g 55 (192)
T 1i1q_B 1 ADILLLDNID--SF--TWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSP 55 (192)
T ss_dssp CEEEEEECSC--SS--HHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECC
T ss_pred CcEEEEECCc--cH--HHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECC
Confidence 5788888222 22 34558888889999988876555555545555444 66654
No 17
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=39.59 E-value=43 Score=34.24 Aligned_cols=35 Identities=11% Similarity=0.291 Sum_probs=25.1
Q ss_pred HHHHHccCCEEEEech-hh------hhhhcc--cCCCcEEEEEe
Q 040560 330 FARIVNSCDVLLGVHG-AG------LANIVF--LPENAVFIQVV 364 (454)
Q Consensus 330 q~~l~~~advlVGvHG-Ag------Ltn~lF--l~pga~vIEi~ 364 (454)
..+.+..|||+|+..+ .| +|.-++ |+||+++|-+-
T Consensus 269 l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 269 VAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred HHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 3456789999998753 22 344444 89999999986
No 18
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=39.52 E-value=46 Score=32.14 Aligned_cols=56 Identities=13% Similarity=0.187 Sum_probs=38.2
Q ss_pred CCcEEEEEEeCCCccccCHH----HHHHHHHHcCCEEEEEeC-CCC------------HHHHHHHHccCCEEEE
Q 040560 286 KMPRLLIISRKRTRTFTNAS----KIARMARRLGFKVVVAEA-DMR------------LSRFARIVNSCDVLLG 342 (454)
Q Consensus 286 ~~prl~~i~R~~~R~i~Ne~----ev~~~l~~~gf~V~~~~~-~~s------------~~eq~~l~~~advlVG 342 (454)
..+++++|.=. .|+=-|-. ++++.+++.|.+|.+++. +++ +.+.++.+..||.+|=
T Consensus 57 ~~mKILiI~GS-~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~ 129 (279)
T 2fzv_A 57 PPVRILLLYGS-LRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVW 129 (279)
T ss_dssp SCCEEEEEESC-CSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEEEeC-CCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEE
Confidence 45688888733 23333333 344555667999999888 555 6778889999999873
No 19
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=38.67 E-value=29 Score=34.36 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=50.6
Q ss_pred CCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeCC---------------CCH--------HHHHHHHccCCEEEE
Q 040560 286 KMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEAD---------------MRL--------SRFARIVNSCDVLLG 342 (454)
Q Consensus 286 ~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~~---------------~s~--------~eq~~l~~~advlVG 342 (454)
..-++++|.|+. ++. .-++..|.+.|.+|.+.+-+ .+. .+.-+.++.|||+|+
T Consensus 176 ~gk~vvVIG~G~---iVG-~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIs 251 (320)
T 1edz_A 176 YGKKCIVINRSE---IVG-RPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT 251 (320)
T ss_dssp TTCEEEEECCCT---TTH-HHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECCCc---chH-HHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEE
Confidence 355889999873 111 12456666779898877322 222 667788899999999
Q ss_pred echhh--hhhhcccCCCcEEEEEe
Q 040560 343 VHGAG--LANIVFLPENAVFIQVV 364 (454)
Q Consensus 343 vHGAg--Ltn~lFl~pga~vIEi~ 364 (454)
.=|+- +-..=|++||++||-+-
T Consensus 252 Atg~p~~vI~~e~vk~GavVIDVg 275 (320)
T 1edz_A 252 GVPSENYKFPTEYIKEGAVCINFA 275 (320)
T ss_dssp CCCCTTCCBCTTTSCTTEEEEECS
T ss_pred CCCCCcceeCHHHcCCCeEEEEcC
Confidence 99985 23333468999999874
No 20
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=36.42 E-value=66 Score=30.84 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=48.1
Q ss_pred HHHHHHHHcCC-EEEEEeCC-------------CCHHHHHHHHccCCEEEEechhhhhhh-------cccCCCcEEEEEe
Q 040560 306 KIARMARRLGF-KVVVAEAD-------------MRLSRFARIVNSCDVLLGVHGAGLANI-------VFLPENAVFIQVV 364 (454)
Q Consensus 306 ev~~~l~~~gf-~V~~~~~~-------------~s~~eq~~l~~~advlVGvHGAgLtn~-------lFl~pga~vIEi~ 364 (454)
.++..|.+.|+ +|.+++-+ .++.+..+.+.++|++|..-.+|+..- =+++++++|+++.
T Consensus 131 aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l~~~~l~~~~~V~D~v 210 (277)
T 3don_A 131 GIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDIV 210 (277)
T ss_dssp HHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CCSSCCTTCCSSCEEEESC
T ss_pred HHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcCCCCHHHcCCCCEEEEec
Confidence 44555666676 66655431 145555566889999998888876432 2468899999986
Q ss_pred eCccccccccchHhHHhhCCCeE
Q 040560 365 PIAVEWLARDYFEEPSKAMKLRY 387 (454)
Q Consensus 365 P~g~~~~~~~~y~~~A~~~gl~Y 387 (454)
- .+ ..+.|-..|+..|.+.
T Consensus 211 Y---~P-~~T~ll~~A~~~G~~~ 229 (277)
T 3don_A 211 Y---NP-YKTPILIEAEQRGNPI 229 (277)
T ss_dssp C---SS-SSCHHHHHHHHTTCCE
T ss_pred C---CC-CCCHHHHHHHHCcCEE
Confidence 2 11 1245777789999765
No 21
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=36.01 E-value=59 Score=29.71 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=44.9
Q ss_pred CcEEEEEEeCCC--ccccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEEEechhhh
Q 040560 287 MPRLLIISRKRT--RTFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLLGVHGAGL 348 (454)
Q Consensus 287 ~prl~~i~R~~~--R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlVGvHGAgL 348 (454)
.++++||.=... ..=.|.+.+.++++++|+++.+++. +.+.++..+.+.+||.++=.-|.-.
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~ 91 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTF 91 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCHH
Confidence 489999963321 2224778899999999999987764 4566777788899999886556544
No 22
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=34.96 E-value=45 Score=33.82 Aligned_cols=34 Identities=9% Similarity=0.284 Sum_probs=24.3
Q ss_pred HHHHccCCEEEEec---hhh----hhhhcc--cCCCcEEEEEe
Q 040560 331 ARIVNSCDVLLGVH---GAG----LANIVF--LPENAVFIQVV 364 (454)
Q Consensus 331 ~~l~~~advlVGvH---GAg----Ltn~lF--l~pga~vIEi~ 364 (454)
.+.+..|||+|+.. |+. ++.-++ |+||+++|-+-
T Consensus 260 ~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 260 EDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 46789999999864 321 334444 89999999875
No 23
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=34.51 E-value=41 Score=32.38 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=42.9
Q ss_pred CCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeCCCCHHHHHH---HHcc------CC---EEEEechhhhhhhcc
Q 040560 286 KMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEADMRLSRFAR---IVNS------CD---VLLGVHGAGLANIVF 353 (454)
Q Consensus 286 ~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~~~s~~eq~~---l~~~------ad---vlVGvHGAgLtn~lF 353 (454)
++-..+||+..+ .+.+.|.+.++++||+|.+.+ +++..|..+ -+++ +| ++|--||- -+.++
T Consensus 42 ~rG~~LIinn~~----~D~~~L~~~f~~LgF~V~~~~-dlt~~em~~~l~~~~~~~dh~~~d~~v~~ilSHG~--~g~i~ 114 (272)
T 3h11_A 42 PLGICLIIDCIG----NETELLRDTFTSLGYEVQKFL-HLSMHGISQILGQFACMPEHRDYDSFVCVLVSRGG--SQSVY 114 (272)
T ss_dssp SSEEEEEEESSC----CCCSHHHHHHHHHTEEEEEEE-SCBHHHHHHHHHHHHTCGGGGGCSEEEEEEEEEEE--TTEEC
T ss_pred cceEEEEECCch----HHHHHHHHHHHHCCCEEEEee-CCCHHHHHHHHHHHHhccccCCCCEEEEEEEcCCC--CCeEE
Confidence 344568888765 466788899999999998877 676554433 3322 33 35667886 36666
Q ss_pred cCCC
Q 040560 354 LPEN 357 (454)
Q Consensus 354 l~pg 357 (454)
.-.|
T Consensus 115 g~D~ 118 (272)
T 3h11_A 115 GVDQ 118 (272)
T ss_dssp BTSC
T ss_pred EEcC
Confidence 6555
No 24
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=34.47 E-value=47 Score=30.84 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCEEEEEeC--CCCHHHHHHHHccCCEEEE
Q 040560 305 SKIARMARRLGFKVVVAEA--DMRLSRFARIVNSCDVLLG 342 (454)
Q Consensus 305 ~ev~~~l~~~gf~V~~~~~--~~s~~eq~~l~~~advlVG 342 (454)
+++++.+++.|.+|.+++. +.++.+..+.+..||++|=
T Consensus 50 ~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~ 89 (218)
T 3rpe_A 50 NVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIY 89 (218)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEE
Confidence 3455666667999999888 5788888999999998764
No 25
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=34.30 E-value=41 Score=30.12 Aligned_cols=42 Identities=29% Similarity=0.226 Sum_probs=27.5
Q ss_pred HHHHHHHcCCEEEEE-eC-C--C----CHHHHHHHHc--cCCEEEEechhhh
Q 040560 307 IARMARRLGFKVVVA-EA-D--M----RLSRFARIVN--SCDVLLGVHGAGL 348 (454)
Q Consensus 307 v~~~l~~~gf~V~~~-~~-~--~----s~~eq~~l~~--~advlVGvHGAgL 348 (454)
|.+.|++.|++|.++ .- + . ++.+-+++.+ .||++|++|--+.
T Consensus 38 l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH~Na~ 89 (180)
T 3qay_A 38 LADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELHLNAS 89 (180)
T ss_dssp HHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEEEECS
T ss_pred HHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEeeeCCC
Confidence 344556679996332 21 1 2 3777777775 5999999997654
No 26
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=31.93 E-value=1.2e+02 Score=29.71 Aligned_cols=71 Identities=18% Similarity=0.325 Sum_probs=50.1
Q ss_pred CCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEEEech-hhhhhhcccCCCcEEEEE
Q 040560 286 KMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLLGVHG-AGLANIVFLPENAVFIQV 363 (454)
Q Consensus 286 ~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pga~vIEi 363 (454)
..-++++|.|+. +--.-+..+|.+.|..|.+... +.++.+ ..++|||+|+.=| +++-..=|.+||++||-+
T Consensus 178 ~Gk~vvViGRS~----iVGkPla~LL~~~~ATVTi~Hs~T~dl~~---~~~~ADIvV~A~G~p~~i~~d~vk~GavVIDV 250 (303)
T 4b4u_A 178 AGKHAVVVGRSA----ILGKPMAMMLLQANATVTICHSRTQNLPE---LVKQADIIVGAVGKAELIQKDWIKQGAVVVDA 250 (303)
T ss_dssp TTCEEEEECCCT----TTHHHHHHHHHHTTCEEEEECTTCSSHHH---HHHTCSEEEECSCSTTCBCGGGSCTTCEEEEC
T ss_pred CCCEEEEEeccc----cccchHHHHHHhcCCEEEEecCCCCCHHH---HhhcCCeEEeccCCCCccccccccCCCEEEEe
Confidence 345788898874 2222445566677999988776 556655 4568999998755 455555689999999985
No 27
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=31.26 E-value=98 Score=26.97 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=38.2
Q ss_pred CCCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHc--cCCEE
Q 040560 285 KKMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEADMRLSRFARIVN--SCDVL 340 (454)
Q Consensus 285 ~~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~~~s~~eq~~l~~--~advl 340 (454)
.++|++++..=.+--.=+...-+..+++..||+|+....+.+.++.++.+. ++|++
T Consensus 16 ~~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV 73 (161)
T 2yxb_A 16 RRRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVI 73 (161)
T ss_dssp CCSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEE
T ss_pred CCCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEE
Confidence 467888777655544444555566778888999976555688888777766 45543
No 28
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=30.65 E-value=45 Score=32.44 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=50.0
Q ss_pred CCcEEEEEEeCCCccccCHHHHHHHHHHc--CCEEEEEeC-CCCHHHHHHHHccCCEEEEechhh-hhhhcccCCCcEEE
Q 040560 286 KMPRLLIISRKRTRTFTNASKIARMARRL--GFKVVVAEA-DMRLSRFARIVNSCDVLLGVHGAG-LANIVFLPENAVFI 361 (454)
Q Consensus 286 ~~prl~~i~R~~~R~i~Ne~ev~~~l~~~--gf~V~~~~~-~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pga~vI 361 (454)
..-++++|.|++. +. .-+...|... |..|.+..- +.++ .+.+++|||+|+.=|+. +-..=|.+||++||
T Consensus 157 ~gk~vvVvG~s~i---VG-~p~A~lL~~~g~~atVtv~h~~t~~L---~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVI 229 (281)
T 2c2x_A 157 AGAHVVVIGRGVT---VG-RPLGLLLTRRSENATVTLCHTGTRDL---PALTRQADIVVAAVGVAHLLTADMVRPGAAVI 229 (281)
T ss_dssp TTCEEEEECCCTT---TH-HHHHHHHTSTTTCCEEEEECTTCSCH---HHHHTTCSEEEECSCCTTCBCGGGSCTTCEEE
T ss_pred CCCEEEEECCCcH---HH-HHHHHHHhcCCCCCEEEEEECchhHH---HHHHhhCCEEEECCCCCcccCHHHcCCCcEEE
Confidence 4558899998741 11 1245556666 789888764 3334 45668999999998876 55555679999999
Q ss_pred EEe
Q 040560 362 QVV 364 (454)
Q Consensus 362 Ei~ 364 (454)
-+-
T Consensus 230 DVg 232 (281)
T 2c2x_A 230 DVG 232 (281)
T ss_dssp ECC
T ss_pred Ecc
Confidence 864
No 29
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=30.16 E-value=63 Score=29.05 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=21.5
Q ss_pred cCHHHHHHHHHHcCCEEEEEeCCCCHHHHHH
Q 040560 302 TNASKIARMARRLGFKVVVAEADMRLSRFAR 332 (454)
Q Consensus 302 ~Ne~ev~~~l~~~gf~V~~~~~~~s~~eq~~ 332 (454)
.+.+.|.+.++++||+|.+.+ +++..|..+
T Consensus 65 ~Da~~L~~~f~~LgF~V~~~~-dlt~~em~~ 94 (178)
T 2h54_A 65 VDITGMTMLLQNLGYSVDVKK-NLTASDMTT 94 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-SCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEec-CCCHHHHHH
Confidence 344577788899999998777 676555443
No 30
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=30.01 E-value=44 Score=34.82 Aligned_cols=97 Identities=8% Similarity=-0.058 Sum_probs=67.9
Q ss_pred CCCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEEEech-hhhhhhcccC--CCcEE
Q 040560 285 KKMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLLGVHG-AGLANIVFLP--ENAVF 360 (454)
Q Consensus 285 ~~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~--pga~v 360 (454)
..++++-||.=- ..--|..|+.+.|++.|.+|+.+-+ +.+++ +++-+.+|++-|.++. ++..-+-+|. =|.-.
T Consensus 218 ~~~~~VNIiG~~--~~~gD~~eik~lL~~~Gi~v~~~~~g~~t~~-ei~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~ 294 (492)
T 3u7q_A 218 STPYDVAIIGDY--NIGGDAWSSRILLEEMGLRCVAQWSGDGSIS-EIELTPKVKLNLVHCYRSMNYISRHMEEKYGIPW 294 (492)
T ss_dssp CCTTEEEEEEEC--CBTTTTHHHHHHHHHTTCEEEEEEETTCCHH-HHHHGGGCSEEEESCHHHHHHHHHHHHHHHCCCE
T ss_pred CCCCcEEEECCC--CChhhHHHHHHHHHHCCCeEEEEeCCCCCHH-HHHhhhcCcEEEEEChHHHHHHHHHHHHHhCCce
Confidence 345677777532 2334678999999999999986555 66775 4566678899887753 5555555553 37778
Q ss_pred EEEeeCccccccccchHhHHhhCCC
Q 040560 361 IQVVPIAVEWLARDYFEEPSKAMKL 385 (454)
Q Consensus 361 IEi~P~g~~~~~~~~y~~~A~~~gl 385 (454)
+++-|+|++- ...++..+|+.+|.
T Consensus 295 i~~~p~G~~~-T~~~L~~ia~~~g~ 318 (492)
T 3u7q_A 295 MEYNFFGPTK-TIESLRAIAAKFDE 318 (492)
T ss_dssp EECCCSSHHH-HHHHHHHHHTTSCH
T ss_pred EecCccCHHH-HHHHHHHHHHHhCC
Confidence 8888999654 24678888888883
No 31
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=27.81 E-value=77 Score=27.49 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHcCCEEEEEeCCCCHHHHHH---HHccCC--------EEEEechhhhhhhcccCCC
Q 040560 303 NASKIARMARRLGFKVVVAEADMRLSRFAR---IVNSCD--------VLLGVHGAGLANIVFLPEN 357 (454)
Q Consensus 303 Ne~ev~~~l~~~gf~V~~~~~~~s~~eq~~---l~~~ad--------vlVGvHGAgLtn~lFl~pg 357 (454)
+.+.+.+.++++||+|.+.+ +++..|..+ -++.-| ++|--||- -+.++...|
T Consensus 42 D~~~L~~~f~~LgF~V~~~~-dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~--~g~i~g~D~ 104 (146)
T 2dko_A 42 DAANLRETFRNLKYEVRNKN-DLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGE--EGIIFGTNG 104 (146)
T ss_dssp HHHHHHHHHHHTTCEEEEEE-SCCHHHHHHHHHHHHHSCCTTEEEEEEEEESCEE--TTEEEETTE
T ss_pred HHHHHHHHHHHCCCEEEEee-CCCHHHHHHHHHHHHHhhcCCCCeEEEEeccCCC--CCEEEEeCC
Confidence 44567788889999998877 677655444 333333 45556775 355555555
No 32
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=27.43 E-value=1.6e+02 Score=26.03 Aligned_cols=67 Identities=15% Similarity=0.231 Sum_probs=44.5
Q ss_pred CCCcEEEEEEeCC----------CccccCHHHHHHHHHHcCCEEEEEeC---C-CCHHHHHH-HHcc--CCEEEEechhh
Q 040560 285 KKMPRLLIISRKR----------TRTFTNASKIARMARRLGFKVVVAEA---D-MRLSRFAR-IVNS--CDVLLGVHGAG 347 (454)
Q Consensus 285 ~~~prl~~i~R~~----------~R~i~Ne~ev~~~l~~~gf~V~~~~~---~-~s~~eq~~-l~~~--advlVGvHGAg 347 (454)
.++||+-+|+=.. ...=.|-.-+.+.+++.|+++....- + -.+.+.++ ...+ +|++|..=|.|
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s 92 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 4678888877552 23333555677899999999865433 2 23555554 3445 89999999988
Q ss_pred hhhh
Q 040560 348 LANI 351 (454)
Q Consensus 348 Ltn~ 351 (454)
.+.-
T Consensus 93 ~g~~ 96 (178)
T 2pjk_A 93 YSPT 96 (178)
T ss_dssp SSTT
T ss_pred CCCC
Confidence 7753
No 33
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=26.84 E-value=81 Score=29.65 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHcCCEEEEEeCCCCHHHH---HHHHccCC--------EEEEechhhhhhhcccCCC
Q 040560 303 NASKIARMARRLGFKVVVAEADMRLSRF---ARIVNSCD--------VLLGVHGAGLANIVFLPEN 357 (454)
Q Consensus 303 Ne~ev~~~l~~~gf~V~~~~~~~s~~eq---~~l~~~ad--------vlVGvHGAgLtn~lFl~pg 357 (454)
+.+.|.+.++++||+|.+.+ +++..|. ++-+..-| +++.-||- -+.++...|
T Consensus 42 D~~~l~~~f~~LgF~V~~~~-dlt~~em~~~l~~~~~~~~~~~d~~v~~~lsHG~--~g~i~~~D~ 104 (250)
T 2j32_A 42 DAANLRETFRNLKYEVRNKN-DLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGE--EGIIFGTNG 104 (250)
T ss_dssp HHHHHHHHHHHTTCEEEEEE-SCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE--TTEEEETTE
T ss_pred HHHHHHHHHHHCCCEEEEEe-CCCHHHHHHHHHHHHHhhccCCCEEEEEECCCCC--CCeEEecCC
Confidence 45677788899999998777 6765544 44443333 34555875 355555444
No 34
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=26.09 E-value=1.3e+02 Score=26.49 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHcCCEEEEEeCCCCHHHH---HHHHccCC--------EEEEechhhhhhhcccCCC
Q 040560 303 NASKIARMARRLGFKVVVAEADMRLSRF---ARIVNSCD--------VLLGVHGAGLANIVFLPEN 357 (454)
Q Consensus 303 Ne~ev~~~l~~~gf~V~~~~~~~s~~eq---~~l~~~ad--------vlVGvHGAgLtn~lFl~pg 357 (454)
+.+.|.+.++++||+|.+.+ +++..|. ++-++.-| ++|--||- -+.++...|
T Consensus 56 D~~~L~~~f~~LgF~V~~~~-dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~--~g~i~g~D~ 118 (164)
T 1qtn_A 56 DAGALTTTFEELHFEIKPHD-DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGD--KGIIYGTDG 118 (164)
T ss_dssp HHHHHHHHHHHTTCEEEEEE-SCCHHHHHHHHHHHHHSCCTTCSCEEEEEESCEE--TTEEECTTS
T ss_pred HHHHHHHHHHHCCCEEEEec-CCCHHHHHHHHHHHHHhhccCCCEEEEEeCCCCC--CCEEEeeCC
Confidence 34566788888999998777 6765554 33333333 45666875 366666665
No 35
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=26.04 E-value=45 Score=25.92 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=18.2
Q ss_pred ccccCHHHHHHHHHHcCCEEE
Q 040560 299 RTFTNASKIARMARRLGFKVV 319 (454)
Q Consensus 299 R~i~Ne~ev~~~l~~~gf~V~ 319 (454)
++=+|.+++++.|++.||+|+
T Consensus 58 ~~gid~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 58 LAGTPMDKIVRTLEANGYEVI 78 (81)
T ss_dssp HHTCCHHHHHHHHHHTTCEEE
T ss_pred HcCCCHHHHHHHHHHcCCEee
Confidence 445789999999999999985
No 36
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=25.82 E-value=1.5e+02 Score=27.87 Aligned_cols=41 Identities=12% Similarity=0.306 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHccCCEEEEechhhhhhhcccCCCcEEEEEeeC
Q 040560 324 DMRLSRFARIVNSCDVLLGVHGAGLANIVFLPENAVFIQVVPI 366 (454)
Q Consensus 324 ~~s~~eq~~l~~~advlVGvHGAgLtn~lFl~pga~vIEi~P~ 366 (454)
.+++.|.+++++.||++||.= +|..|+--+ =|.-+|-|+..
T Consensus 249 ~~sl~e~~ali~~a~l~I~~D-sg~~HlAaa-~g~P~v~lfg~ 289 (348)
T 1psw_A 249 ETQLDQAVILIAACKAIVTND-SGLMHVAAA-LNRPLVALYGP 289 (348)
T ss_dssp TSCHHHHHHHHHTSSEEEEES-SHHHHHHHH-TTCCEEEEESS
T ss_pred cCCHHHHHHHHHhCCEEEecC-CHHHHHHHH-cCCCEEEEECC
Confidence 478899999999999999984 445555333 36666667643
No 37
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=25.33 E-value=73 Score=28.61 Aligned_cols=52 Identities=25% Similarity=0.461 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHcCCEEEEEeCCCCHHHH---HHHHccCC--------EEEEechhhhhhhcccCCC
Q 040560 303 NASKIARMARRLGFKVVVAEADMRLSRF---ARIVNSCD--------VLLGVHGAGLANIVFLPEN 357 (454)
Q Consensus 303 Ne~ev~~~l~~~gf~V~~~~~~~s~~eq---~~l~~~ad--------vlVGvHGAgLtn~lFl~pg 357 (454)
+.+.|.+.++++||+|.+.+ +++..|. ++-+++-| ++|--||-. +.++...|
T Consensus 70 D~~~L~~~F~~LgF~V~v~~-dlt~~em~~~l~~~s~~dh~~~dc~vvvilSHG~~--g~I~g~D~ 132 (173)
T 2ql9_A 70 DAEALFKCFRSLGFDVIVYN-DCSCAKMQDLLKKASEEDHTNAACFACILLSHGEE--NVIYGKDG 132 (173)
T ss_dssp HHHHHHHHHHHHTEEEEEEE-SCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEET--TEEEETTE
T ss_pred HHHHHHHHHHHCCCEEEEEe-CCCHHHHHHHHHHHHHhhccCCCeEEEeecCCCCC--CEEEEcCC
Confidence 45567788888999998777 6775554 44444444 566668753 56666665
No 38
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=24.93 E-value=90 Score=29.80 Aligned_cols=52 Identities=19% Similarity=0.455 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHcCCEEEEEeCCCCHHHH---HHHHccCC--------EEEEechhhhhhhcccCCC
Q 040560 303 NASKIARMARRLGFKVVVAEADMRLSRF---ARIVNSCD--------VLLGVHGAGLANIVFLPEN 357 (454)
Q Consensus 303 Ne~ev~~~l~~~gf~V~~~~~~~s~~eq---~~l~~~ad--------vlVGvHGAgLtn~lFl~pg 357 (454)
+.+.|.+.++++||+|.+.+ +++..|. ++-+..-| +++.-||- -|.++...+
T Consensus 57 Da~~L~~~f~~LGF~V~~~~-dlt~~em~~~l~~~~~~dh~~~d~~v~~~lsHG~--~~~i~~~D~ 119 (272)
T 1m72_A 57 DSDNLSKVLKTLGFKVTVFP-NLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGE--LGMLYAKDT 119 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEE-SCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE--TTEEECSSS
T ss_pred HHHHHHHHHHHCCCEEEEec-CcCHHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC--CCEEEecCC
Confidence 34567788899999998877 6765544 44444433 34555874 567766665
No 39
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=24.71 E-value=34 Score=35.97 Aligned_cols=100 Identities=19% Similarity=0.220 Sum_probs=69.2
Q ss_pred CCcEEEEEEeCC--CccccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEEEech-hhhhhhcccC--CCcE
Q 040560 286 KMPRLLIISRKR--TRTFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLLGVHG-AGLANIVFLP--ENAV 359 (454)
Q Consensus 286 ~~prl~~i~R~~--~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~--pga~ 359 (454)
.++++-||.=.. ...--|..|+.+.|++.|.+|+.+-+ +.++ ++++-+.+|++-|.++- +|..-+=+|. =|.-
T Consensus 152 ~~~~VNIlG~~~~g~~~~gD~~eikrlL~~~Gi~v~~~~pgg~t~-~ei~~~~~A~~niv~~~~~g~~~A~~Le~r~GiP 230 (525)
T 3aek_B 152 PEVTCNLLGATALGFRHRDDVAEVTKLLATMGIKVNVCAPLGASP-DDLRKLGQAHFNVLMYPETGESAARHLERACKQP 230 (525)
T ss_dssp SSCEEEEEEECTTCTTHHHHHHHHHHHHHTTTCEEEEEEETTCCH-HHHHTGGGSSEEEECCHHHHHHHHHHHHHHSCCC
T ss_pred CCCceEEEecCCCCCCChhhHHHHHHHHHHCCCeEEEEeCCCCCH-HHHHhhccCCEEEEEChhhHHHHHHHHHHHcCCC
Confidence 456787776432 22234567888999999999987655 6777 45566778888888763 4554455553 3566
Q ss_pred EEEEeeCccccccccchHhHHhhCCCeE
Q 040560 360 FIQVVPIAVEWLARDYFEEPSKAMKLRY 387 (454)
Q Consensus 360 vIEi~P~g~~~~~~~~y~~~A~~~gl~Y 387 (454)
.++..|+|++- ...+.+.+++..|...
T Consensus 231 ~i~~~PiG~~~-T~~~Lr~ia~~~g~~~ 257 (525)
T 3aek_B 231 FTKIVPIGVGA-TRDFLAEVSKITGLPV 257 (525)
T ss_dssp BCCCCCCSHHH-HHHHHHHHHHHHCCCC
T ss_pred ceecCCcCHHH-HHHHHHHHHHHHCCCH
Confidence 66678999654 3468999999999764
No 40
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=24.44 E-value=1.3e+02 Score=27.23 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=38.5
Q ss_pred CCCcEEEEEEeCCCccccCHHHHHHHHHHcC--CEEEEEeCCCCHHHHHHHH-----ccCCEEEEech
Q 040560 285 KKMPRLLIISRKRTRTFTNASKIARMARRLG--FKVVVAEADMRLSRFARIV-----NSCDVLLGVHG 345 (454)
Q Consensus 285 ~~~prl~~i~R~~~R~i~Ne~ev~~~l~~~g--f~V~~~~~~~s~~eq~~l~-----~~advlVGvHG 345 (454)
..+|++.+|.=. +--+-=.+|..+.|+++| |++.+...+-+.++..++. +.++|+|++=|
T Consensus 5 ~~~~~V~IimgS-~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG 71 (174)
T 3lp6_A 5 GERPRVGVIMGS-DSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAG 71 (174)
T ss_dssp -CCCSEEEEESC-GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCCeEEEEECc-HHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 456788777644 233444557777888886 6777777655555555443 56899888655
No 41
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=23.91 E-value=92 Score=28.55 Aligned_cols=59 Identities=8% Similarity=-0.002 Sum_probs=39.7
Q ss_pred CCCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHccCCE-EEEe
Q 040560 285 KKMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEADMRLSRFARIVNSCDV-LLGV 343 (454)
Q Consensus 285 ~~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~~~s~~eq~~l~~~adv-lVGv 343 (454)
..++++++-.=.+--.=+...-+..+++..||+|+.+..+.|.++.++.+..-+. +||+
T Consensus 90 ~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 90 EEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp --CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred CCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 4578888776555555555556667888899999766557899888776665443 4555
No 42
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=23.69 E-value=1.1e+02 Score=27.58 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=39.3
Q ss_pred CCCcEEEEEEeCCCccccCHHHHHHHHHHcC--CEEEEEeCCCCHHHHHHHHc-----cCCEEEEech
Q 040560 285 KKMPRLLIISRKRTRTFTNASKIARMARRLG--FKVVVAEADMRLSRFARIVN-----SCDVLLGVHG 345 (454)
Q Consensus 285 ~~~prl~~i~R~~~R~i~Ne~ev~~~l~~~g--f~V~~~~~~~s~~eq~~l~~-----~advlVGvHG 345 (454)
..+|++.+|.=. +--+-=.++..+.|+++| |++.+....-+.++..++.. .++|+|++=|
T Consensus 9 ~~~~~V~IimGS-~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG 75 (170)
T 1xmp_A 9 HMKSLVGVIMGS-TSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAG 75 (170)
T ss_dssp --CCSEEEEESS-GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEE
T ss_pred cCCCcEEEEECc-HHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECC
Confidence 468888888744 334444557777888886 67777776666666666654 3789988655
No 43
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=22.73 E-value=37 Score=32.47 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=44.3
Q ss_pred CcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHccCCEEEEec-hh---------hhhhhcccCC
Q 040560 287 MPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEADMRLSRFARIVNSCDVLLGVH-GA---------GLANIVFLPE 356 (454)
Q Consensus 287 ~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~~~s~~eq~~l~~~advlVGvH-GA---------gLtn~lFl~p 356 (454)
.+|++||. ++.-=...+.+.++|++.||+|.++++ ..+.+....+++.|+||=.. ++ .|.. |...
T Consensus 4 m~~vLiV~--g~~~~~~a~~l~~aL~~~g~~V~~i~~-~~~~~~~~~L~~yDvIIl~d~~~~~l~~~~~~~L~~--yV~~ 78 (259)
T 3rht_A 4 MTRVLYCG--DTSLETAAGYLAGLMTSWQWEFDYIPS-HVGLDVGELLAKQDLVILSDYPAERMTAQAIDQLVT--MVKA 78 (259)
T ss_dssp --CEEEEE--SSCTTTTHHHHHHHHHHTTCCCEEECT-TSCBCSSHHHHTCSEEEEESCCGGGBCHHHHHHHHH--HHHT
T ss_pred CceEEEEC--CCCchhHHHHHHHHHHhCCceEEEecc-cccccChhHHhcCCEEEEcCCccccCCHHHHHHHHH--HHHh
Confidence 46888885 333223445677899999999998886 22222234567889988653 22 2222 3356
Q ss_pred CcEEEEEe
Q 040560 357 NAVFIQVV 364 (454)
Q Consensus 357 ga~vIEi~ 364 (454)
|..+|=+-
T Consensus 79 GGgLi~~g 86 (259)
T 3rht_A 79 GCGLVMLG 86 (259)
T ss_dssp TCEEEEEC
T ss_pred CCeEEEec
Confidence 88887664
No 44
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=22.46 E-value=1.1e+02 Score=29.05 Aligned_cols=53 Identities=21% Similarity=0.387 Sum_probs=33.4
Q ss_pred cCHHHHHHHHHHcCCEEEEEeCCCCHHHH---HHHHccCC--------EEEEechhhhhhhcccCCC
Q 040560 302 TNASKIARMARRLGFKVVVAEADMRLSRF---ARIVNSCD--------VLLGVHGAGLANIVFLPEN 357 (454)
Q Consensus 302 ~Ne~ev~~~l~~~gf~V~~~~~~~s~~eq---~~l~~~ad--------vlVGvHGAgLtn~lFl~pg 357 (454)
.+.+.|.+.++++||+|.+.+ +++..|. ++-+..-| +++.-||-. +.++...+
T Consensus 44 ~D~~~L~~~f~~LGF~V~~~~-dlt~~em~~~l~~~~~~~h~~~d~~v~~~lsHG~~--g~i~~~D~ 107 (259)
T 3sir_A 44 VDCENLTRVLKQLDFEVTVYK-DCRYKDILRTIEYSASQNHSDSDCILVAILSHGEM--GYIYAKDT 107 (259)
T ss_dssp CHHHHHHHHHHHTTCEEEEEE-ECSHHHHHHHHHHHHTSCCTTEEEEEEEEEECTTC--CCCCCTTH
T ss_pred HHHHHHHHHHHHCCCEEEEEe-CCCHHHHHHHHHHHHHhhccCCCEEEEEEecCCCC--CeEEeCCC
Confidence 345677788999999998777 6665443 44443332 345668865 55554443
No 45
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=22.34 E-value=1e+02 Score=27.75 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=47.9
Q ss_pred CCCcEEEEEEeCC----CccccCHHHHHHHHHHcCCEEEEEeC---C-CCHHHHHHHH--ccCCEEEEechhhhhhhccc
Q 040560 285 KKMPRLLIISRKR----TRTFTNASKIARMARRLGFKVVVAEA---D-MRLSRFARIV--NSCDVLLGVHGAGLANIVFL 354 (454)
Q Consensus 285 ~~~prl~~i~R~~----~R~i~Ne~ev~~~l~~~gf~V~~~~~---~-~s~~eq~~l~--~~advlVGvHGAgLtn~lFl 354 (454)
.++||+.+|+=.+ .+.=.|-.-+.+.+++.|+++..... + -.+.+.++.. .++|++|.-=|.|.+.-=+.
T Consensus 28 ~~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~~D~t 107 (185)
T 3rfq_A 28 LVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRDVT 107 (185)
T ss_dssp -CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSSTTCCH
T ss_pred CCCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCcccH
Confidence 5789988887552 12445777888999999999865433 2 2355555443 57999999999998764443
No 46
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=22.26 E-value=1.4e+02 Score=29.00 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=40.0
Q ss_pred CCCcEEEEEEeCCC-------ccccCHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHccCCEEEEech
Q 040560 285 KKMPRLLIISRKRT-------RTFTNASKIARMARRLGFKVVVAEADMRLSRFARIVNSCDVLLGVHG 345 (454)
Q Consensus 285 ~~~prl~~i~R~~~-------R~i~Ne~ev~~~l~~~gf~V~~~~~~~s~~eq~~l~~~advlVGvHG 345 (454)
..+|+|.+....+. ..-.|..++++++++.|.+++++..+.+.++.-+++..+|-||=.=|
T Consensus 28 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG 95 (315)
T 1l9x_A 28 AKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGG 95 (315)
T ss_dssp CCCCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCC
T ss_pred CCCCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 45788888766432 12235567899999999999887754444444455667776664444
No 47
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=22.17 E-value=83 Score=31.66 Aligned_cols=34 Identities=9% Similarity=0.217 Sum_probs=23.3
Q ss_pred HHHHccCCEEEEechh------h-hhhhcc--cCCCcEEEEEe
Q 040560 331 ARIVNSCDVLLGVHGA------G-LANIVF--LPENAVFIQVV 364 (454)
Q Consensus 331 ~~l~~~advlVGvHGA------g-Ltn~lF--l~pga~vIEi~ 364 (454)
.+++..+||+|+..+. . ++.-++ |+||++||-+-
T Consensus 250 ~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva 292 (401)
T 1x13_A 250 AAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence 3566789999998533 2 232233 89999999875
No 48
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=22.13 E-value=47 Score=34.21 Aligned_cols=98 Identities=8% Similarity=0.012 Sum_probs=68.8
Q ss_pred CCCcEEEEEEeCCC-ccccCHHHHHHHHHHcCCEEEEEe-------------------C-CCCHHHHHHHHccCCEEEEe
Q 040560 285 KKMPRLLIISRKRT-RTFTNASKIARMARRLGFKVVVAE-------------------A-DMRLSRFARIVNSCDVLLGV 343 (454)
Q Consensus 285 ~~~prl~~i~R~~~-R~i~Ne~ev~~~l~~~gf~V~~~~-------------------~-~~s~~eq~~l~~~advlVGv 343 (454)
..++++-||. |. -.--|..|+.+.+++.|.+|+.+- . +.++ ++++-+.+|++-|.+
T Consensus 167 ~~~~~VNii~--G~~~~~~D~~eik~lL~~~Gi~v~~~~d~s~~ld~~~~~~~~~~~~~gg~~~-~ei~~~~~A~~ni~~ 243 (458)
T 3pdi_B 167 KRPRQVNVLC--SANLTPGDLEYIAESIESFGLRPLLIPDLSGSLDGHLDENRFNALTTGGLSV-AELATAGQSVATLVV 243 (458)
T ss_dssp CCSSEEEEEE--CTTCCHHHHHHHHHHHHTTTCEEEEESCHHHHSSSCCCSSCCTTCCSCSBCH-HHHGGGSSCSCEEEE
T ss_pred CCCCeEEEEe--CCCCChHHHHHHHHHHHHcCCEEEEecCccccccCccccccccccCCCCCCH-HHHHhhhhCcEEEEe
Confidence 3466777773 21 223456788899999999998762 1 2345 667777888888888
Q ss_pred chhhhhhhcccC--CCcEEEEE-eeCccccccccchHhHHhhCCCe
Q 040560 344 HGAGLANIVFLP--ENAVFIQV-VPIAVEWLARDYFEEPSKAMKLR 386 (454)
Q Consensus 344 HGAgLtn~lFl~--pga~vIEi-~P~g~~~~~~~~y~~~A~~~gl~ 386 (454)
+..+..-+-+|. -|.-.+++ .|+|++. ...+...+|+..|..
T Consensus 244 ~~~~~~~A~~Le~~~GiP~~~~~~p~G~~~-T~~~l~~la~~~g~~ 288 (458)
T 3pdi_B 244 GQSLAGAADALAERTGVPDRRFGMLYGLDA-VDAWLMALAEISGNP 288 (458)
T ss_dssp SGGGHHHHHHHHHHSCCCEEEECCSCHHHH-HHHHHHHHHHHHSSC
T ss_pred cHHHHHHHHHHHHHHCCCEEecCCCcCHHH-HHHHHHHHHHHHCCc
Confidence 887655555663 37888887 6999654 347889999999874
No 49
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=22.13 E-value=2.2e+02 Score=24.88 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=44.2
Q ss_pred CCCcEEEEEEeCCC-cccc--CHHHHHHHHHHcCCEEEEEeC--C--CCHHHHHHHH-c--cCCEEEEechhhhhhh
Q 040560 285 KKMPRLLIISRKRT-RTFT--NASKIARMARRLGFKVVVAEA--D--MRLSRFARIV-N--SCDVLLGVHGAGLANI 351 (454)
Q Consensus 285 ~~~prl~~i~R~~~-R~i~--Ne~ev~~~l~~~gf~V~~~~~--~--~s~~eq~~l~-~--~advlVGvHGAgLtn~ 351 (454)
.++||+-+|+=.+. -++. |-.-+.+.|++.|+++..... + -.+.+.++.. . .+|++|..=|.|.|.-
T Consensus 8 ~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~~ 84 (172)
T 1mkz_A 8 FIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEG 84 (172)
T ss_dssp CCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSSTT
T ss_pred CCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCC
Confidence 35678877765432 2344 445677889999999865433 2 2355555543 3 3999999999988763
No 50
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=21.60 E-value=1e+02 Score=31.78 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=48.0
Q ss_pred CcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeCCCCH-----------HHHHHHHccCCEEEEechh-hhhh-hcc
Q 040560 287 MPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEADMRL-----------SRFARIVNSCDVLLGVHGA-GLAN-IVF 353 (454)
Q Consensus 287 ~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~~~s~-----------~eq~~l~~~advlVGvHGA-gLtn-~lF 353 (454)
.-+++++.-.. | =..+++.|+.+|.+|.+.+.+-.- ...-+++..|||++..=|. ++-| -.|
T Consensus 211 GktVgIiG~G~---I--G~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVilt~gt~~iI~~e~l 285 (436)
T 3h9u_A 211 GKTACVCGYGD---V--GKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVTTTGNDDIITSEHF 285 (436)
T ss_dssp TCEEEEECCSH---H--HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSCSCSBCTTTG
T ss_pred CCEEEEEeeCH---H--HHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEECCCCcCccCHHHH
Confidence 34677776441 1 235677888889998888752100 1123567789999986553 3333 333
Q ss_pred --cCCCcEEEEEeeCc
Q 040560 354 --LPENAVFIQVVPIA 367 (454)
Q Consensus 354 --l~pga~vIEi~P~g 367 (454)
|++|+.||-+-...
T Consensus 286 ~~MK~gAIVINvgRg~ 301 (436)
T 3h9u_A 286 PRMRDDAIVCNIGHFD 301 (436)
T ss_dssp GGCCTTEEEEECSSSG
T ss_pred hhcCCCcEEEEeCCCC
Confidence 89999999876543
No 51
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=21.46 E-value=1.1e+02 Score=25.68 Aligned_cols=54 Identities=11% Similarity=0.061 Sum_probs=33.1
Q ss_pred CcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHc--cCCEE
Q 040560 287 MPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEADMRLSRFARIVN--SCDVL 340 (454)
Q Consensus 287 ~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~~~s~~eq~~l~~--~advl 340 (454)
+|++++-.=.+--.=+...=+...++..||+|+.+..+.|.++.++.+. ++|++
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v 58 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAI 58 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEE
T ss_pred CCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEE
Confidence 4666665444433333334445677888999976655678888777665 45543
No 52
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=21.40 E-value=2e+02 Score=23.51 Aligned_cols=50 Identities=20% Similarity=0.332 Sum_probs=37.4
Q ss_pred CcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHccCCEEEEe
Q 040560 287 MPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEADMRLSRFARIVNSCDVLLGV 343 (454)
Q Consensus 287 ~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~~~s~~eq~~l~~~advlVGv 343 (454)
..+++++.... ..+++.+.+++.|..+.. . ..+-.+..++++.||++|.+
T Consensus 32 ~~~l~i~G~g~-----~~~~~~~~~~~~~~~v~~-g-~~~~~~~~~~~~~adv~v~p 81 (166)
T 3qhp_A 32 DIVLLLKGKGP-----DEKKIKLLAQKLGVKAEF-G-FVNSNELLEILKTCTLYVHA 81 (166)
T ss_dssp GEEEEEECCST-----THHHHHHHHHHHTCEEEC-C-CCCHHHHHHHHTTCSEEEEC
T ss_pred CeEEEEEeCCc-----cHHHHHHHHHHcCCeEEE-e-ecCHHHHHHHHHhCCEEEEC
Confidence 45677777542 357888888888887765 4 46778888999999999864
No 53
>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain, hydrolase; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
Probab=21.24 E-value=51 Score=32.64 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=26.2
Q ss_pred HHHHHHcCCEEEEE--eC--C--CCHHHHHHHHc--cCCEEEEechhh
Q 040560 308 ARMARRLGFKVVVA--EA--D--MRLSRFARIVN--SCDVLLGVHGAG 347 (454)
Q Consensus 308 ~~~l~~~gf~V~~~--~~--~--~s~~eq~~l~~--~advlVGvHGAg 347 (454)
.+.|++.|++|.++ .- + .++.+-+++.+ .||++|++|--+
T Consensus 47 ~~~L~~~G~~V~V~m~tR~~D~~~~L~~R~~~An~~~ADlfISIH~Na 94 (326)
T 1xov_A 47 SDELKREGHNVKTFIDRTSTTQSANLNKIVNWHNANPADVHISVHLNA 94 (326)
T ss_dssp HHHHHHTTCEEEEEEESSCCSHHHHHHHHHHHHHHSCCSEEEEEEEEC
T ss_pred HHHHHhCCCceEEEEecCCCCccCCHHHHHHHHHhcCCCEEEEEeccC
Confidence 34455669996333 22 2 45667677666 499999999655
No 54
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=20.89 E-value=54 Score=34.53 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=66.5
Q ss_pred CCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEEEec-hhhhhhhcccC--CCcEEE
Q 040560 286 KMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLLGVH-GAGLANIVFLP--ENAVFI 361 (454)
Q Consensus 286 ~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlVGvH-GAgLtn~lFl~--pga~vI 361 (454)
.++++-||.=-. .--|..|+.+.|++.|.+|+..-+ +.++ ++++-+.+|++-|.++ -+|..=+=+|. =|.-.+
T Consensus 205 ~~~~VNIlG~~~--~~gD~~eikrlL~~~Gi~v~~~~~gg~t~-~ei~~~~~A~~niv~~~~~~~~~A~~Leer~GiP~i 281 (533)
T 1mio_A 205 KKYSINVLGEYN--IGGDAWEMDRVLEKIGYHVNATLTGDATY-EKVQNADKADLNLVQCHRSINYIAEMMETKYGIPWI 281 (533)
T ss_dssp CTTEEEEEEECC--BTSHHHHHHHHHHHHTCEEEEEEETTCCH-HHHHBTTSCSEEEESCHHHHHHHHHHHHHHHCCCEE
T ss_pred CCCeEEEEcCCC--ChhhHHHHHHHHHHCCCeEEEEeCCCCCH-HHHHhhhcCCEEEEECHHHHHHHHHHHHHHhCCCeE
Confidence 456777775321 234568999999999999986555 6677 5566678889988875 35554444553 367778
Q ss_pred EEeeCccccccccchHhHHhhCCC
Q 040560 362 QVVPIAVEWLARDYFEEPSKAMKL 385 (454)
Q Consensus 362 Ei~P~g~~~~~~~~y~~~A~~~gl 385 (454)
.+.|+|++- ...+.+.+|+.+|.
T Consensus 282 ~~~piG~~~-T~~~Lr~ia~~~g~ 304 (533)
T 1mio_A 282 KCNFIGVDG-IVETLRDMAKCFDD 304 (533)
T ss_dssp ECCCSSHHH-HHHHHHHHHHHSCC
T ss_pred EecCCCHHH-HHHHHHHHHHHhCC
Confidence 888999653 24678888888885
No 55
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=20.30 E-value=1.9e+02 Score=26.09 Aligned_cols=60 Identities=8% Similarity=0.170 Sum_probs=38.3
Q ss_pred CCCcEEEEEEeCCCccccCHHHHHHHHHHcC--CEEEEEeCCCCHHHHHHHH-----ccCCEEEEech
Q 040560 285 KKMPRLLIISRKRTRTFTNASKIARMARRLG--FKVVVAEADMRLSRFARIV-----NSCDVLLGVHG 345 (454)
Q Consensus 285 ~~~prl~~i~R~~~R~i~Ne~ev~~~l~~~g--f~V~~~~~~~s~~eq~~l~-----~~advlVGvHG 345 (454)
...|++.+|.=.. --+--.++..+.|+++| |++.++..+-+.++..+.. +.++|+|++=|
T Consensus 10 ~~~P~V~IimGS~-SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG 76 (173)
T 4grd_A 10 HSAPLVGVLMGSS-SDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAG 76 (173)
T ss_dssp CSSCSEEEEESSG-GGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEE
T ss_pred CCCCeEEEEeCcH-hHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEecc
Confidence 4578888887443 33434556777888886 6777777655544433333 45789887655
No 56
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=20.30 E-value=1.3e+02 Score=29.30 Aligned_cols=52 Identities=17% Similarity=0.411 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHcCCEEEEEeCCCCHHHH---HHHHccCC--------EEEEechhhhhhhcccCCC
Q 040560 303 NASKIARMARRLGFKVVVAEADMRLSRF---ARIVNSCD--------VLLGVHGAGLANIVFLPEN 357 (454)
Q Consensus 303 Ne~ev~~~l~~~gf~V~~~~~~~s~~eq---~~l~~~ad--------vlVGvHGAgLtn~lFl~pg 357 (454)
+.+.|.+.++++||+|.+.+ +++..|. ++-+..-| +++.-||- -|.++...+
T Consensus 85 Da~~L~~~f~~LGF~V~~~~-dlt~~em~~~l~~f~~~dh~~~D~~vv~ilSHG~--~g~i~g~D~ 147 (310)
T 2nn3_C 85 DSDNLSKVLKTLGFKVTVFP-NLKSEEINKFIQQTAEMDHSDADCLLVAVLTAGE--LGMLYAKDT 147 (310)
T ss_dssp HHHHHHHHHHHTTCEEEEEE-SCCHHHHHHHHHHHHSSCGGGBSCEEEEEEEEEE--TTEEECSSC
T ss_pred HHHHHHHHHHHCCCEEEEec-CCCHHHHHHHHHHHHHhccCCCCEEEEEEeCCCC--CCEEEecCC
Confidence 34577788899999998877 6765544 44443333 24444884 577776665
Done!