Query 040560
Match_columns 454
No_of_seqs 295 out of 644
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 15:23:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040560.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040560hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gdha2 c.23.12.1 (A:2-100,A:2 79.5 4.6 0.00033 32.4 9.1 89 287-387 1-93 (129)
2 d2fzva1 c.23.5.4 (A:1-233) Put 70.9 5.5 0.0004 35.4 7.9 57 285-342 32-105 (233)
3 d2bona1 e.52.1.2 (A:5-299) Lip 62.6 11 0.00077 33.7 8.3 65 304-368 17-91 (295)
4 d1e5da1 c.23.5.1 (A:251-402) R 55.2 5.8 0.00043 31.8 4.5 53 287-341 4-58 (152)
5 d1vmea1 c.23.5.1 (A:251-398) R 49.8 8.7 0.00064 30.6 4.8 54 286-341 4-62 (148)
6 g1pyo.1 c.17.1.1 (A:,B:) Caspa 46.9 24 0.0017 30.8 7.8 55 302-357 51-115 (257)
7 d1ycga1 c.23.5.1 (A:251-399) N 43.4 8.5 0.00062 30.7 3.6 53 287-341 4-58 (149)
8 d2qwxa1 c.23.5.3 (A:1-230) Qui 40.6 17 0.0013 30.9 5.6 19 305-323 23-41 (230)
9 d1xova2 c.56.5.6 (A:1-180) End 40.4 24 0.0018 29.4 6.4 40 306-345 33-80 (180)
10 g1nme.1 c.17.1.1 (A:,B:) Apopa 40.4 15 0.0011 31.8 5.2 30 302-332 41-70 (238)
11 d1b0aa1 c.2.1.7 (A:123-288) Me 40.3 30 0.0022 28.9 6.9 70 287-363 37-108 (166)
12 d7reqa2 c.23.6.1 (A:561-728) M 39.8 20 0.0014 30.0 5.6 54 285-338 35-88 (168)
13 d1ydga_ c.23.5.8 (A:) Trp repr 37.1 14 0.00099 31.1 4.1 53 287-341 4-79 (201)
14 d2ez9a1 c.31.1.3 (A:183-365) P 35.6 32 0.0023 28.5 6.4 74 286-364 31-124 (183)
15 d1vi2a1 c.2.1.7 (A:107-288) Pu 33.2 1.1E+02 0.0083 24.5 10.5 91 289-388 44-147 (182)
16 d1a4ia1 c.2.1.7 (A:127-296) Me 32.4 50 0.0036 27.4 7.0 71 287-364 39-111 (170)
17 d2naca2 c.23.12.1 (A:1-147,A:3 29.1 14 0.001 31.7 2.8 84 300-387 52-139 (186)
18 d2djia1 c.31.1.3 (A:187-363) P 28.8 60 0.0044 26.3 6.9 76 285-365 21-116 (177)
19 d1u11a_ c.23.8.1 (A:) N5-CAIR 28.6 29 0.0021 28.8 4.7 63 287-352 2-71 (159)
20 d1p6ta1 d.58.17.1 (A:1-72) Pot 27.6 14 0.00098 26.1 2.0 19 301-319 54-72 (72)
21 d1ccwa_ c.23.6.1 (A:) Glutamat 27.1 36 0.0026 27.1 4.9 51 286-336 2-52 (137)
22 d1uz5a3 c.57.1.2 (A:181-328) M 26.7 31 0.0022 27.8 4.5 49 302-350 27-80 (148)
23 d1m72a_ c.17.1.1 (A:) Caspase- 26.5 65 0.0048 27.7 7.1 27 303-330 46-72 (256)
24 d2a5la1 c.23.5.8 (A:3-198) Trp 24.0 17 0.0012 29.9 2.4 50 290-341 6-72 (196)
25 d1js1x2 c.78.1.1 (X:164-324) T 23.2 90 0.0065 25.3 6.9 55 287-342 3-72 (161)
26 d1y5ea1 c.57.1.1 (A:12-166) Mo 22.9 1E+02 0.0075 24.3 7.2 61 295-355 13-80 (155)
27 d1rlia_ c.23.5.6 (A:) Hypothet 22.7 56 0.004 25.8 5.4 54 289-344 1-75 (179)
28 d1yioa2 c.23.1.1 (A:3-130) Res 22.6 55 0.004 24.9 5.2 44 286-336 1-44 (128)
29 d1sc6a2 c.23.12.1 (A:7-107,A:2 22.4 40 0.0029 26.6 4.3 92 285-387 2-95 (132)
30 d2fi0a1 a.248.1.1 (A:3-81) Hyp 22.2 28 0.0021 25.5 3.0 18 302-319 59-76 (79)
31 d1mkza_ c.57.1.1 (A:) MoaB {Es 22.1 1E+02 0.0076 24.8 7.2 70 287-356 8-87 (170)
32 d2ftsa3 c.57.1.2 (A:499-653) G 21.4 66 0.0048 25.7 5.6 48 302-349 27-79 (155)
33 d1dlja3 c.26.3.1 (A:295-402) U 21.4 30 0.0022 26.3 3.1 40 306-345 39-88 (108)
34 d1d4aa_ c.23.5.3 (A:) NAD(P)H: 21.3 57 0.0042 28.8 5.6 19 305-323 23-41 (273)
35 d1vpda2 c.2.1.6 (A:3-163) Hydr 21.1 91 0.0066 24.5 6.5 57 332-390 52-118 (161)
36 d1pjca2 c.23.12.2 (A:1-135,A:3 21.1 45 0.0033 28.2 4.6 94 299-396 14-122 (193)
37 d1ys7a2 c.23.1.1 (A:7-127) Tra 20.1 53 0.0039 24.9 4.5 41 288-335 2-42 (121)
No 1
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}
Probab=79.47 E-value=4.6 Score=32.36 Aligned_cols=89 Identities=19% Similarity=0.297 Sum_probs=64.2
Q ss_pred CcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeC--CCCHHHHHHHHccCCEEEEechhhhhhhcc--cCCCcEEEE
Q 040560 287 MPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEA--DMRLSRFARIVNSCDVLLGVHGAGLANIVF--LPENAVFIQ 362 (454)
Q Consensus 287 ~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~--~~s~~eq~~l~~~advlVGvHGAgLtn~lF--l~pga~vIE 362 (454)
|||+++ .+ .+ .++.++.+++ .|+|+.... .++-+|.++...++|++|...+..++.-+| +|+.-.+|-
T Consensus 1 K~kVli-t~----~~--~~~~~~~l~~-~~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~ 72 (129)
T d1gdha2 1 KKKILI-TW----PL--PEAAMARARE-SYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCIS 72 (129)
T ss_dssp CCEEEE-SS----CC--CHHHHHHHHT-TSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEE
T ss_pred CCEEEE-eC----CC--CHHHHHHHHc-CCcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeee
Confidence 577765 32 22 4567778876 568765443 578899999999999999888889999999 677778888
Q ss_pred EeeCccccccccchHhHHhhCCCeE
Q 040560 363 VVPIAVEWLARDYFEEPSKAMKLRY 387 (454)
Q Consensus 363 i~P~g~~~~~~~~y~~~A~~~gl~Y 387 (454)
-+--|+++.. -..|+..|+.-
T Consensus 73 ~~gvG~d~ID----~~~a~~~gI~V 93 (129)
T d1gdha2 73 TYSIGFDHID----LDACKARGIKV 93 (129)
T ss_dssp EESSCCTTBC----HHHHHHTTCEE
T ss_pred ecccCCcccc----HHHHHhCCCEE
Confidence 7777765532 23477788764
No 2
>d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]}
Probab=70.89 E-value=5.5 Score=35.38 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=39.1
Q ss_pred CCCcEEEEEEeCCCccccCHH----HHHHHHHHcCCEEEEEeC-CCC------------HHHHHHHHccCCEEEE
Q 040560 285 KKMPRLLIISRKRTRTFTNAS----KIARMARRLGFKVVVAEA-DMR------------LSRFARIVNSCDVLLG 342 (454)
Q Consensus 285 ~~~prl~~i~R~~~R~i~Ne~----ev~~~l~~~gf~V~~~~~-~~s------------~~eq~~l~~~advlVG 342 (454)
...|||++|.=. .|+=-|-. .+.+.+++.|.++.+++. +++ +.+..+.+..||.+|=
T Consensus 32 ~~~~KIl~I~GS-~R~~s~s~~la~~~~~~l~~~G~ev~~idL~dlpl~~~~~~~~~~~v~~l~~~l~~AD~vIi 105 (233)
T d2fzva1 32 APPVRILLLYGS-LRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVW 105 (233)
T ss_dssp CSCCEEEEEESC-CSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEE
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHHHHhhhcCeEEEEEccCCCCCCCcccccCCHHHHHHHHHHhhcCeeEE
Confidence 457899999733 34433333 344566777999999987 443 5577888999998763
No 3
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}
Probab=62.57 E-value=11 Score=33.72 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCEEEEEeC--CCCHHHHHHHH--ccCCEEEEechhhhhh----hcccCCC--cEEEEEeeCcc
Q 040560 304 ASKIARMARRLGFKVVVAEA--DMRLSRFARIV--NSCDVLLGVHGAGLAN----IVFLPEN--AVFIQVVPIAV 368 (454)
Q Consensus 304 e~ev~~~l~~~gf~V~~~~~--~~s~~eq~~l~--~~advlVGvHGAgLtn----~lFl~pg--a~vIEi~P~g~ 368 (454)
..++++.+++.|+++.+... .-...+.++-+ .+.|+||.+=|=|--| .++-..+ ...|=|+|.|.
T Consensus 17 ~~~~~~~l~~~g~~~~v~~T~~~g~a~~~~~~~~~~~~d~Ivv~GGDGTv~ev~~gl~~~~~~~~p~lgilP~GT 91 (295)
T d2bona1 17 LREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGT 91 (295)
T ss_dssp HHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHCCSSCCCEEEEEECSS
T ss_pred HHHHHHHHHHCCCEEEEEEcCCcchHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHhccCCCCceEEEEECCc
Confidence 45788899999998876654 23444554433 5689999999999654 4443443 24566899983
No 4
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Probab=55.19 E-value=5.8 Score=31.84 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=37.7
Q ss_pred CcEEEEEEeCC-CccccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEE
Q 040560 287 MPRLLIISRKR-TRTFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLL 341 (454)
Q Consensus 287 ~prl~~i~R~~-~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlV 341 (454)
|.-|+|-|+.| ++++. +++.+.+++.|.+|.+++. +.+..+.+..+.++|.+|
T Consensus 4 Ki~IiY~S~tGnTe~~A--~~Ia~~l~~~g~ev~~~~~~~~~~~~~~~~l~~~d~vi 58 (152)
T d1e5da1 4 KVVIFYDSMWHSTEKMA--RVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVI 58 (152)
T ss_dssp EEEEEECCSSSHHHHHH--HHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEE
T ss_pred eEEEEEECCCcHHHHHH--HHHHHHHhhCCCEEEEeecccCChhhhccchhhCCEEE
Confidence 44456667776 44443 2445566667999999887 678888888899999766
No 5
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=49.81 E-value=8.7 Score=30.62 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=36.4
Q ss_pred CCcEEEEEEeCC-CccccCHHHHHHHHHHcCCEEEEEeC----CCCHHHHHHHHccCCEEE
Q 040560 286 KMPRLLIISRKR-TRTFTNASKIARMARRLGFKVVVAEA----DMRLSRFARIVNSCDVLL 341 (454)
Q Consensus 286 ~~prl~~i~R~~-~R~i~Ne~ev~~~l~~~gf~V~~~~~----~~s~~eq~~l~~~advlV 341 (454)
.|.-|+|-|..| ++.+. +.+.+.+++.|++|.+.+. ..++.++..-+.++|.+|
T Consensus 4 ~kv~IiY~S~tGnTe~~A--~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~d~ii 62 (148)
T d1vmea1 4 GKVTVIYDSMYGFVENVM--KKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALI 62 (148)
T ss_dssp TEEEEEEECSSSHHHHHH--HHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEE
T ss_pred CEEEEEEECCCcHHHHHH--HHHHHHHHhCCCeEEEEecccccccchhHhhhhHHHCCEeE
Confidence 445566777776 34432 2344556667999988776 356888888888888754
No 6
>g1pyo.1 c.17.1.1 (A:,B:) Caspase-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.93 E-value=24 Score=30.81 Aligned_cols=55 Identities=15% Similarity=0.306 Sum_probs=35.8
Q ss_pred cCHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHc---------cCC-EEEEechhhhhhhcccCCC
Q 040560 302 TNASKIARMARRLGFKVVVAEADMRLSRFARIVN---------SCD-VLLGVHGAGLANIVFLPEN 357 (454)
Q Consensus 302 ~Ne~ev~~~l~~~gf~V~~~~~~~s~~eq~~l~~---------~ad-vlVGvHGAgLtn~lFl~pg 357 (454)
.+.+.|.+.++++||+|++.. +++..|..+.+. .+| +++..||=|-.|.++...+
T Consensus 51 ~Da~~l~~~l~~lGF~V~~~~-nlt~~em~~~l~~f~~~~~~~~~~~~~~~~~~HG~~~~l~~~D~ 115 (257)
T g1pyo.1 51 VDHSTLVTLFKLLGYDVHVLC-DQTAQEMQEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDG 115 (257)
T ss_dssp HHHHHHHHHHHHTTEEEEEEE-SCCHHHHHHHHHHHHTCGGGGTSSEEEEEEESCEETTEEECTTS
T ss_pred HHHHHHHHHHHHCCCEEEEEe-cCCHHHHHHHHHHHHhhhccCCCCEEEEEEeccCCcCeEEecCC
Confidence 356678889999999998777 777665444332 234 3556666666666554443
No 7
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}
Probab=43.36 E-value=8.5 Score=30.67 Aligned_cols=53 Identities=8% Similarity=-0.055 Sum_probs=37.5
Q ss_pred CcEEEEEEeCC-CccccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEE
Q 040560 287 MPRLLIISRKR-TRTFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLL 341 (454)
Q Consensus 287 ~prl~~i~R~~-~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlV 341 (454)
|--|+|-|+.| ++++. +.+.+.+++.|.+|.+.+. +.+..+....+.++|.+|
T Consensus 4 K~lIvY~S~~GnT~~vA--~~Ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii 58 (149)
T d1ycga1 4 KAVIAYDTMWLSTEKMA--HALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVL 58 (149)
T ss_dssp EEEEEECCSSSHHHHHH--HHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEE
T ss_pred EEEEEEECCCcHHHHHH--HHHHHHHHhcCCeeEEEEccccchHHHhhhhhhCCeEE
Confidence 44566668776 34442 2445566677999998887 778888888888888766
No 8
>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.55 E-value=17 Score=30.86 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCEEEEEeC
Q 040560 305 SKIARMARRLGFKVVVAEA 323 (454)
Q Consensus 305 ~ev~~~l~~~gf~V~~~~~ 323 (454)
+++++.+++.|.+|.+++.
T Consensus 23 ~~~~~~~~~~g~ev~~~dL 41 (230)
T d2qwxa1 23 NVAVDELSRQGCTVTVSDL 41 (230)
T ss_dssp HHHHHHHHHTTCEEEEEET
T ss_pred HHHHHHHHhCCCEEEEEEc
Confidence 5777888888999999886
No 9
>d1xova2 c.56.5.6 (A:1-180) Endolysin Ply, catalytic domain {Bacteriophage Psa [TaxId: 171618]}
Probab=40.43 E-value=24 Score=29.43 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCEEEEEeC--C----CCHHHHHHHH--ccCCEEEEech
Q 040560 306 KIARMARRLGFKVVVAEA--D----MRLSRFARIV--NSCDVLLGVHG 345 (454)
Q Consensus 306 ev~~~l~~~gf~V~~~~~--~----~s~~eq~~l~--~~advlVGvHG 345 (454)
.|.+.|++.|++|.+... + .++.+.+... .+||++|+.|-
T Consensus 33 ~l~~~L~~~G~~V~~~~~~~~~~~~~~L~~R~~~an~~~aDl~iSiH~ 80 (180)
T d1xova2 33 AASDELKREGHNVKTFIDRTSTTQSANLNKIVNWHNANPADVHISVHL 80 (180)
T ss_dssp HHHHHHHHTTCEEEEEEESSCCSHHHHHHHHHHHHHHSCCSEEEEEEE
T ss_pred HHHHHHHhCCCeEEEEEccCCCccccCHHHHHHHHHhcCCCEEEEecc
Confidence 445566777999876543 2 2366666554 67999999994
No 10
>g1nme.1 c.17.1.1 (A:,B:) Apopain (caspase-3, cpp32) {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.37 E-value=15 Score=31.81 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=21.8
Q ss_pred cCHHHHHHHHHHcCCEEEEEeCCCCHHHHHH
Q 040560 302 TNASKIARMARRLGFKVVVAEADMRLSRFAR 332 (454)
Q Consensus 302 ~Ne~ev~~~l~~~gf~V~~~~~~~s~~eq~~ 332 (454)
.+.+.|.+.++++||+|.+.+ +++..+..+
T Consensus 41 ~Da~~l~~~l~~lGF~V~~~~-nlt~~~~~~ 70 (238)
T g1nme.1 41 VDAANLRETFRNLKYEVRNKN-DLTREEIVE 70 (238)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-SCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEe-CCCHHHHHH
Confidence 355677788999999998777 676554433
No 11
>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}
Probab=40.30 E-value=30 Score=28.85 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=50.8
Q ss_pred CcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEEEech-hhhhhhcccCCCcEEEEE
Q 040560 287 MPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLLGVHG-AGLANIVFLPENAVFIQV 363 (454)
Q Consensus 287 ~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pga~vIEi 363 (454)
.-++++|.|+. +--.-+..+|.+.|..|.+... +-.+.+ ...+|||+|..=| +++...=|.+||++||.+
T Consensus 37 GK~v~VIGrS~----~VG~Pla~lL~~~gatVt~~h~~t~~l~~---~~~~ADivI~a~G~p~~i~~~~vk~g~vvIDv 108 (166)
T d1b0aa1 37 GLNAVVIGASN----IVGRPMSMELLLAGCTTTVTHRFTKNLRH---HVENADLLIVAVGKPGFIPGDWIKEGAIVIDV 108 (166)
T ss_dssp TCEEEEECCCT----TTHHHHHHHHHTTTCEEEEECSSCSCHHH---HHHHCSEEEECSCCTTCBCTTTSCTTCEEEEC
T ss_pred cceEEEEeccc----cccHHHHHHHHHhhccccccccccchhHH---HHhhhhHhhhhccCcccccccccCCCcEEEec
Confidence 45788888763 4445677788888999988876 445544 4578999998666 455555588999999985
No 12
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=39.78 E-value=20 Score=30.03 Aligned_cols=54 Identities=24% Similarity=0.215 Sum_probs=35.5
Q ss_pred CCCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHccCC
Q 040560 285 KKMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEADMRLSRFARIVNSCD 338 (454)
Q Consensus 285 ~~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~~~s~~eq~~l~~~ad 338 (454)
.++||+++-.=.+--.-.-..-+...++..||+|+......|.++.++.+...|
T Consensus 35 gr~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~~~~~e~iv~aa~~~~ 88 (168)
T d7reqa2 35 GRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEAD 88 (168)
T ss_dssp SSCCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCTTBCHHHHHHHHHHHT
T ss_pred CCCCeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCCCcCcHHHHHHHHHccC
Confidence 578998876555422222334556788889999976555678888777665533
No 13
>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]}
Probab=37.08 E-value=14 Score=31.11 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=35.2
Q ss_pred CcEEEEEEeCC-CccccCHHHHHHHHHHcCCEEEEEeC-CCCHH---------------------HHHHHHccCCEEE
Q 040560 287 MPRLLIISRKR-TRTFTNASKIARMARRLGFKVVVAEA-DMRLS---------------------RFARIVNSCDVLL 341 (454)
Q Consensus 287 ~prl~~i~R~~-~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~---------------------eq~~l~~~advlV 341 (454)
|.-|+|-|+.| ++.+. +++.+.+++.|.||.+++. +.... +.+.-+.+||.+|
T Consensus 4 kilivy~S~~GnT~~la--~~ia~g~~~~G~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~aD~ii 79 (201)
T d1ydga_ 4 KLAIVFYSSTGTGYAMA--QEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIV 79 (201)
T ss_dssp EEEEEECCSSSHHHHHH--HHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEE
T ss_pred EEEEEEeCCCcHHHHHH--HHHHHHHHhcCCEEEEEEccccCccchhhhhhHhhcCCCcccCchhhhhhhHhhCCEeE
Confidence 44566667776 45554 5667778888999988876 33211 2356778899877
No 14
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}
Probab=35.59 E-value=32 Score=28.51 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=43.8
Q ss_pred CCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeC-------CCC----------HHHHHHHHccCCEEEEechhhh
Q 040560 286 KMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEA-------DMR----------LSRFARIVNSCDVLLGVHGAGL 348 (454)
Q Consensus 286 ~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~-------~~s----------~~eq~~l~~~advlVGvHGAgL 348 (454)
++|- +++.+. .|+ -.+++.+.+++.|..|...-. +.+ -...-.++.+||++|.+ |+-|
T Consensus 31 ~rPv-ii~G~G-~~~--a~~~l~~lae~~~~Pv~tt~~~~g~~~~~hp~~~G~~G~~~~~~~~~~i~~aDlil~v-G~~l 105 (183)
T d2ez9a1 31 ERPL-IYYGIG-ARK--AGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFV-GNNY 105 (183)
T ss_dssp SSEE-EEECGG-GTT--CHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCCCCSSSSCHHHHHHHHHCSEEEEE-SCCC
T ss_pred CCeE-EEEcCC-ccc--chHHHHHHhhccceEEEeeccccccccccCccccccccccccHHHHhhhhccCceEEe-eccc
Confidence 4554 455543 333 357888999999988864211 111 23455678999999987 5443
Q ss_pred hh---hcccCCCcEEEEEe
Q 040560 349 AN---IVFLPENAVFIQVV 364 (454)
Q Consensus 349 tn---~lFl~pga~vIEi~ 364 (454)
.. .-+.++++.+|+|-
T Consensus 106 ~~~~~~~~~~~~~~iI~Id 124 (183)
T d2ez9a1 106 PFAEVSKAFKNTRYFLQID 124 (183)
T ss_dssp TTTTTTTTTTTCSEEEEEE
T ss_pred Ccccceeecccccchheee
Confidence 21 12345566777664
No 15
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}
Probab=33.20 E-value=1.1e+02 Score=24.50 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=58.0
Q ss_pred EEEEEEeCCCccccCHHHHHHHHHH----cCCEEEEEeCCCCHHHHHHHHccCCEEEEechhhhhh---------hcccC
Q 040560 289 RLLIISRKRTRTFTNASKIARMARR----LGFKVVVAEADMRLSRFARIVNSCDVLLGVHGAGLAN---------IVFLP 355 (454)
Q Consensus 289 rl~~i~R~~~R~i~Ne~ev~~~l~~----~gf~V~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn---------~lFl~ 355 (454)
.+.+++|+. .+.+.+.+.+++ .+..+...+. ....+-.....++|++|-.-..|+-. .-.++
T Consensus 44 ~i~i~nR~~----~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~ 118 (182)
T d1vi2a1 44 EIKLFNRRD----EFFDKALAFAQRVNENTDCVVTVTDL-ADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLH 118 (182)
T ss_dssp EEEEEECSS----TTHHHHHHHHHHHHHHSSCEEEEEET-TCHHHHHHHHHTCSEEEECSSTTSTTSCSCCSCCCGGGSC
T ss_pred eEeeeccch----HHHHHHHHHHHHHHhhcCcceEeeec-ccccchhhhhcccceeccccCCccccccchhhhhHHHhhh
Confidence 566777652 333444443333 3455555552 44555566789999999877777652 33468
Q ss_pred CCcEEEEEeeCccccccccchHhHHhhCCCeEE
Q 040560 356 ENAVFIQVVPIAVEWLARDYFEEPSKAMKLRYL 388 (454)
Q Consensus 356 pga~vIEi~P~g~~~~~~~~y~~~A~~~gl~Y~ 388 (454)
++..|++++ |. + ..+.|-..|+..|.+++
T Consensus 119 ~~~~v~Di~-Y~--p-~~T~ll~~a~~~g~~~i 147 (182)
T d1vi2a1 119 PGLLVTECV-YN--P-HMTKLLQQAQQAGCKTI 147 (182)
T ss_dssp TTCEEEECC-CS--S-SSCHHHHHHHTTTCEEE
T ss_pred cchhhHHhh-cC--c-cccHHHHHHHHCcCeEe
Confidence 899999986 22 1 13568888999998874
No 16
>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.42 E-value=50 Score=27.45 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=51.9
Q ss_pred CcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEEEech-hhhhhhcccCCCcEEEEEe
Q 040560 287 MPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLLGVHG-AGLANIVFLPENAVFIQVV 364 (454)
Q Consensus 287 ~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pga~vIEi~ 364 (454)
.-++++|.|+. +--.-+..+|.+.|..|.+... +-.+. +..++||++|...| +++-..=|.+||++||.+-
T Consensus 39 Gk~vvVIGrS~----iVGrPLa~lL~~~gatVt~~~~~t~~l~---~~~~~aDivi~a~G~~~~i~~~~vk~g~iviDvg 111 (170)
T d1a4ia1 39 GRHAVVVGRSK----IVGAPMHDLLLWNNATVTTCHSKTAHLD---EEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCG 111 (170)
T ss_dssp TCEEEEECCCT----TTHHHHHHHHHHTTCEEEEECTTCSSHH---HHHTTCSEEEECCCCTTCBCGGGSCTTCEEEECC
T ss_pred cceEEEEecCC----ccchHHHHHHHhccCceEEEecccccHH---HHHhhccchhhccccccccccccccCCCeEeccC
Confidence 34688888763 3444677788888999998886 44454 45678999885444 5677777899999999873
No 17
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}
Probab=29.12 E-value=14 Score=31.73 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=62.3
Q ss_pred cccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEEE--echhhhhhhcc-cCCCcEEEEEeeCccccccccc
Q 040560 300 TFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLLG--VHGAGLANIVF-LPENAVFIQVVPIAVEWLARDY 375 (454)
Q Consensus 300 ~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlVG--vHGAgLtn~lF-l~pga~vIEi~P~g~~~~~~~~ 375 (454)
.+.|+--+.+.|++.|+++++..- +.+=.+..+.+..|||+|. +|++-+|.-+. --|.-.+|...--|++...
T Consensus 52 ~v~~~lglr~~Le~~GhelV~~sd~~~~~~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VD--- 128 (186)
T d2naca2 52 SVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVD--- 128 (186)
T ss_dssp BTTTGGGCHHHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBC---
T ss_pred cccchhhHHHHHHHCCCEEEEecCCCCChHHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCcccc---
Confidence 567777888899999999987664 4555567778899999998 47888888887 3467788877776665431
Q ss_pred hHhHHhhCCCeE
Q 040560 376 FEEPSKAMKLRY 387 (454)
Q Consensus 376 y~~~A~~~gl~Y 387 (454)
-+.|+..|+.-
T Consensus 129 -l~aa~e~gI~V 139 (186)
T d2naca2 129 -LQSAIDRNVTV 139 (186)
T ss_dssp -HHHHHHTTCEE
T ss_pred -HHHHHhCCCEE
Confidence 23477777664
No 18
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}
Probab=28.85 E-value=60 Score=26.31 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=44.7
Q ss_pred CCCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeC-------CC----------CHHHHHHHHccCCEEEEechhh
Q 040560 285 KKMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEA-------DM----------RLSRFARIVNSCDVLLGVHGAG 347 (454)
Q Consensus 285 ~~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~-------~~----------s~~eq~~l~~~advlVGvHGAg 347 (454)
.++|-+ ++.+.- + -..+++.+.++++|.-|..--. +. .-....+++.+||+||.+ |+-
T Consensus 21 Ak~Pvi-i~G~g~-~--~a~~~l~~lae~l~~Pv~~t~~~~g~ip~~hp~~~G~~g~~~~~~~~~~l~~aDlvi~l-G~~ 95 (177)
T d2djia1 21 SKRPVI-YAGIGT-M--GHGPAVQELARKIKAPVITTGKNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFA-GSN 95 (177)
T ss_dssp CSSEEE-EECGGG-T--TCHHHHHHHHHHHTCCEEECTTCGGGSCTTCTTBCCCSSSSSCHHHHHHHHHCSEEEEE-SCC
T ss_pred CCCEEE-EECcCh-h--hHHHHHHHhhhccceEEEecccccccccccccccccccccccChhhhhhhhccCceEEe-ecc
Confidence 356654 455432 2 2457888999998988753111 11 124566789999999988 554
Q ss_pred hhhhc---ccCCCcEEEEEee
Q 040560 348 LANIV---FLPENAVFIQVVP 365 (454)
Q Consensus 348 Ltn~l---Fl~pga~vIEi~P 365 (454)
|.... +.++.+.+|+|-.
T Consensus 96 ~~~~~~~~~~~~~~kiI~Id~ 116 (177)
T d2djia1 96 FPFSEVEGTFRNVDNFIQIDI 116 (177)
T ss_dssp CTTTTTTTTTTTCSEEEEEES
T ss_pred CCCccceeccccccchheEEe
Confidence 43222 2455566666653
No 19
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}
Probab=28.60 E-value=29 Score=28.85 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=37.0
Q ss_pred CcEEEEEEeCCCccccCHHHHHHHHHHcC--CEEEEEeCCCCHHHHHHHH-----ccCCEEEEechhhhhhhc
Q 040560 287 MPRLLIISRKRTRTFTNASKIARMARRLG--FKVVVAEADMRLSRFARIV-----NSCDVLLGVHGAGLANIV 352 (454)
Q Consensus 287 ~prl~~i~R~~~R~i~Ne~ev~~~l~~~g--f~V~~~~~~~s~~eq~~l~-----~~advlVGvHGAgLtn~l 352 (454)
+|++.||.=..+ -+--.++..+.|+++| |++.+...+-+..+..+.+ +.++|+|++ ||+.+.|
T Consensus 2 ~P~V~IimGS~S-D~~v~~~a~~~L~~~gI~~e~~v~SAHR~p~~l~~~~~~~e~~~~~viIa~--AG~aaaL 71 (159)
T d1u11a_ 2 APVVGIIMGSQS-DWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAG--AGGAAHL 71 (159)
T ss_dssp CCSEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEE--EESSCCH
T ss_pred cCeEEEEeCCHh-hHHHHHHHHHHHHHhCCceEEEEehHhhChHHHHHHHHHHHhcCCeEEEEE--ecCCCCC
Confidence 567767654322 2223346667788886 5665555555554444443 467899987 5665544
No 20
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Probab=27.55 E-value=14 Score=26.11 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=16.8
Q ss_pred ccCHHHHHHHHHHcCCEEE
Q 040560 301 FTNASKIARMARRLGFKVV 319 (454)
Q Consensus 301 i~Ne~ev~~~l~~~gf~V~ 319 (454)
-+|.+++.+++++.||+|+
T Consensus 54 ~~~~~~i~~~i~~~Gy~vv 72 (72)
T d1p6ta1 54 ETGTAAIQEKIEKLGYHVV 72 (72)
T ss_dssp TSCHHHHHHHHHHHTCEEC
T ss_pred CCCHHHHHHHHHHhCCccC
Confidence 3689999999999999984
No 21
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=27.10 E-value=36 Score=27.11 Aligned_cols=51 Identities=10% Similarity=0.020 Sum_probs=34.6
Q ss_pred CCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHcc
Q 040560 286 KMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEADMRLSRFARIVNS 336 (454)
Q Consensus 286 ~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~~~s~~eq~~l~~~ 336 (454)
+|+++++-.=.+-..-+...=+...++..||+|+.+-.+.|.++.++.+.+
T Consensus 2 ~k~kVvi~~~~gD~H~lG~~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~ 52 (137)
T d1ccwa_ 2 EKKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIE 52 (137)
T ss_dssp CCCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHH
T ss_pred CCCEEEEEecCCChhHHHHHHHHHHHHHCCCeEEecccccCHHHHHHHHHh
Confidence 356766655444444444455667788899999877657888888776654
No 22
>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Probab=26.68 E-value=31 Score=27.77 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=31.4
Q ss_pred cCHHHHHHHHHHcCCEEEEEeC--C--CCHHHHH-HHHccCCEEEEechhhhhh
Q 040560 302 TNASKIARMARRLGFKVVVAEA--D--MRLSRFA-RIVNSCDVLLGVHGAGLAN 350 (454)
Q Consensus 302 ~Ne~ev~~~l~~~gf~V~~~~~--~--~s~~eq~-~l~~~advlVGvHGAgLtn 350 (454)
.|-.-+.+.+++.|++++.... + -.+.+-+ +...++|++|..=|++.+.
T Consensus 27 sn~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DliIttGG~s~g~ 80 (148)
T d1uz5a3 27 INGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGASGGT 80 (148)
T ss_dssp CHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC----
T ss_pred CChHHHHHhhhcccccceeeeeeccHHHHHHHHHHhhhccccEEEECCCcccch
Confidence 3556677889999999875554 2 1233333 3567799999999987655
No 23
>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]}
Probab=26.45 E-value=65 Score=27.75 Aligned_cols=27 Identities=22% Similarity=0.570 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHcCCEEEEEeCCCCHHHH
Q 040560 303 NASKIARMARRLGFKVVVAEADMRLSRF 330 (454)
Q Consensus 303 Ne~ev~~~l~~~gf~V~~~~~~~s~~eq 330 (454)
+.+.|.+.++++||+|.+.. +++..+.
T Consensus 46 Da~~l~~~l~~lGF~V~~~~-nlt~~~m 72 (256)
T d1m72a_ 46 DSDNLSKVLKTLGFKVTVFP-NLKSEEI 72 (256)
T ss_dssp HHHHHHHHHHHTTCEEEEEE-SCCHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEe-CCCHHHH
Confidence 46677888999999998777 6665443
No 24
>d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.98 E-value=17 Score=29.90 Aligned_cols=50 Identities=26% Similarity=0.315 Sum_probs=31.5
Q ss_pred EEEEEeCC-CccccCHHHHHHHHHHcCCEEEEEeC-CCC---------------HHHHHHHHccCCEEE
Q 040560 290 LLIISRKR-TRTFTNASKIARMARRLGFKVVVAEA-DMR---------------LSRFARIVNSCDVLL 341 (454)
Q Consensus 290 l~~i~R~~-~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s---------------~~eq~~l~~~advlV 341 (454)
|+|-|+.| ++.+. +++.+.+++.|.||.+++. +++ +.+...-+.+||.+|
T Consensus 6 iiy~S~~GnT~~la--~~i~~g~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~ii 72 (196)
T d2a5la1 6 VLYYSRHGATAEMA--RQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLA 72 (196)
T ss_dssp EEECCSSSHHHHHH--HHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEE
T ss_pred EEEeCCCcHHHHHH--HHHHHHHhhcCCEEEEEeccccchHHHHhccccccccccccchhhhhhcCEEE
Confidence 44557766 45553 4666777778999988876 322 112355667888876
No 25
>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}
Probab=23.19 E-value=90 Score=25.28 Aligned_cols=55 Identities=11% Similarity=0.230 Sum_probs=35.5
Q ss_pred CcEEEEEEeCCCccccCH---HHHHHHHHHcCCEEEEEeC-CCCHH-----------HHHHHHccCCEEEE
Q 040560 287 MPRLLIISRKRTRTFTNA---SKIARMARRLGFKVVVAEA-DMRLS-----------RFARIVNSCDVLLG 342 (454)
Q Consensus 287 ~prl~~i~R~~~R~i~Ne---~ev~~~l~~~gf~V~~~~~-~~s~~-----------eq~~l~~~advlVG 342 (454)
||++++----..| -+|. ..++.++.++|+++.++.| ++... +..+.+.+|||++.
T Consensus 3 ~~~~~~~~~~h~~-~~~~~Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~t 72 (161)
T d1js1x2 3 RPKVVMTWAPHPR-PLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYA 72 (161)
T ss_dssp SCEEEEECCCCSS-CCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEE
T ss_pred CCeEEEEeccCCC-CCccHHHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceee
Confidence 4555554333344 4442 3577888889999999998 54322 24577888888863
No 26
>d1y5ea1 c.57.1.1 (A:12-166) MoaB {Bacillus cereus [TaxId: 1396]}
Probab=22.93 E-value=1e+02 Score=24.26 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=39.3
Q ss_pred eCCCccccCHHHHHHHHHHcCCEEEEEeC-CC---CHHHHHHH---HccCCEEEEechhhhhhhcccC
Q 040560 295 RKRTRTFTNASKIARMARRLGFKVVVAEA-DM---RLSRFARI---VNSCDVLLGVHGAGLANIVFLP 355 (454)
Q Consensus 295 R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~---s~~eq~~l---~~~advlVGvHGAgLtn~lFl~ 355 (454)
+.+.+.=.|-.-+.+.+++.|++|+...- .- .+.+.++- ...+|++|..=|.|.+--=+.|
T Consensus 13 ~~~~~~D~ngp~L~~~l~~~G~~v~~~~iv~D~~~~i~~~l~~~~~~~~~DlIvTtGGts~g~~D~t~ 80 (155)
T d1y5ea1 13 TRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITKRDVTI 80 (155)
T ss_dssp SCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSSTTCCHH
T ss_pred CCCCCcCccHHHHHHHHHhcCCEEEEeeeecchHHHHHHHHHHHHhccCCCEEEEeeeeecccccccc
Confidence 33333334556788899999999975443 22 24444432 2468999999999887655544
No 27
>d1rlia_ c.23.5.6 (A:) Hypothetical protein YwqN {Bacillus subtilis [TaxId: 1423]}
Probab=22.70 E-value=56 Score=25.85 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=32.6
Q ss_pred EEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeC-CC--------------------CHHHHHHHHccCCEEEEec
Q 040560 289 RLLIISRKRTRTFTNASKIARMARRLGFKVVVAEA-DM--------------------RLSRFARIVNSCDVLLGVH 344 (454)
Q Consensus 289 rl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~--------------------s~~eq~~l~~~advlVGvH 344 (454)
||++|.=+ .|+=-|-..+++.+.+ |+++..++. ++ .+.+.++.+.+||++|=..
T Consensus 1 KIlii~gS-pr~~gnt~~l~~~~~~-g~e~e~i~l~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~l~~AD~ii~~s 75 (179)
T d1rlia_ 1 KIAVINGG-TRSGGNTDVLAEKAVQ-GFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFAT 75 (179)
T ss_dssp CEEEEESS-CSSCCHHHHHHHHHHT-TTCCEEEEC-----------------------CHHHHHHHHHTCSEEEEEE
T ss_pred CEEEEECC-CCCCCHHHHHHHHHHc-CCCeeEEEhhhhccCCccchhhhhcCCCCccHHHHHHHHHHHhCCeEEEee
Confidence 35555522 3444566677766654 666655554 21 2567788999999988543
No 28
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=22.58 E-value=55 Score=24.90 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=28.5
Q ss_pred CCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHcc
Q 040560 286 KMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEADMRLSRFARIVNS 336 (454)
Q Consensus 286 ~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~~~s~~eq~~l~~~ 336 (454)
.||++++|+-.. .+...+.+.|++.||+|...+ +..+-+++++.
T Consensus 1 akP~ILiVDDd~----~~~~~l~~~L~~~g~~v~~a~---~~~~al~~~~~ 44 (128)
T d1yioa2 1 AKPTVFVVDDDM----SVREGLRNLLRSAGFEVETFD---CASTFLEHRRP 44 (128)
T ss_dssp CCCEEEEECSCH----HHHHHHHHHHHTTTCEEEEES---SHHHHHHHCCT
T ss_pred CCCEEEEEECCH----HHHHHHHHHHHHcCCCccccc---cHHHHHHHHHh
Confidence 378999998431 222345667778899987665 55666666544
No 29
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=22.36 E-value=40 Score=26.57 Aligned_cols=92 Identities=12% Similarity=0.133 Sum_probs=58.6
Q ss_pred CCCcEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHccCCEEEEechhhhhhhcc-cCCCcEEEE
Q 040560 285 KKMPRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEA-DMRLSRFARIVNSCDVLLGVHGAGLANIVF-LPENAVFIQ 362 (454)
Q Consensus 285 ~~~prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~-~~s~~eq~~l~~~advlVGvHGAgLtn~lF-l~pga~vIE 362 (454)
+.|.++++..+ + + ++.++.|++.|+.++...+ ..+-+|.++.+..+|+++..-...++--++ .-|.-.+|-
T Consensus 2 k~kmKILv~d~-----i-~-~~a~~~L~~~g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~ 74 (132)
T d1sc6a2 2 KDKIKFLLVEG-----V-H-QKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIG 74 (132)
T ss_dssp CSSCCEEECSC-----C-C-HHHHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEE
T ss_pred CCCCEEEEECC-----C-C-HHHHHHHHhCCCEEEEeCCCCCCHHHHHHhhcCCcEEEEecccccChhhhhccccceeEE
Confidence 34677777542 3 3 3556888999987655544 577777789999999988655556766665 235666666
Q ss_pred EeeCccccccccchHhHHhhCCCeE
Q 040560 363 VVPIAVEWLARDYFEEPSKAMKLRY 387 (454)
Q Consensus 363 i~P~g~~~~~~~~y~~~A~~~gl~Y 387 (454)
-.--|++... -..|+..|+.-
T Consensus 75 ~~gvG~D~ID----l~aa~~~gI~V 95 (132)
T d1sc6a2 75 AFAIGTNQVD----LDAAAKRGIPV 95 (132)
T ss_dssp ECSSCCTTBC----HHHHHHTTCCE
T ss_pred EecccccccC----HHHHHhCCCEE
Confidence 5554543321 23377777654
No 30
>d2fi0a1 a.248.1.1 (A:3-81) Hypothetical protein SPr0485/SP0561 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=22.22 E-value=28 Score=25.54 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=16.3
Q ss_pred cCHHHHHHHHHHcCCEEE
Q 040560 302 TNASKIARMARRLGFKVV 319 (454)
Q Consensus 302 ~Ne~ev~~~l~~~gf~V~ 319 (454)
+|.+.+++++++.||+|+
T Consensus 59 idl~~~~~~L~~aG~~v~ 76 (79)
T d2fi0a1 59 TPMDKIVRTLEANGYEVI 76 (79)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHCCCeee
Confidence 578899999999999986
No 31
>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}
Probab=22.10 E-value=1e+02 Score=24.84 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=42.6
Q ss_pred CcEEEEEE---eCCCccccCHHHHHHHHHHcCCEEEEEeC--C--CCHHHHHH---HHccCCEEEEechhhhhhhcccCC
Q 040560 287 MPRLLIIS---RKRTRTFTNASKIARMARRLGFKVVVAEA--D--MRLSRFAR---IVNSCDVLLGVHGAGLANIVFLPE 356 (454)
Q Consensus 287 ~prl~~i~---R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~--~--~s~~eq~~---l~~~advlVGvHGAgLtn~lFl~p 356 (454)
..|+-+|. +++.+.=.|-.-+.+++++.|++|+...- + -.+.+.+. .-.++|++|..=|.|++.-=+.|+
T Consensus 8 p~rvaiitvsD~~g~~~D~nGp~L~~~l~~~G~~v~~~~iv~Dd~~~~~~~l~~~~~~~~~dlIiTtGGtg~g~~D~t~e 87 (170)
T d1mkza_ 8 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPE 87 (170)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSSTTCCHHH
T ss_pred CceEEEEEEcCCCCcCCCChHHHHHHHHHHCCCEEEEeeeeCCCHHHHHHHHHhhhhcccceEEEEeeeeccccccccHH
Confidence 34554444 43434435556788999999999864332 2 12333332 334689999999988876555544
No 32
>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.41 E-value=66 Score=25.68 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=32.8
Q ss_pred cCHHHHHHHHHHcCCEEEEEeC--C--CCHHHHH-HHHccCCEEEEechhhhh
Q 040560 302 TNASKIARMARRLGFKVVVAEA--D--MRLSRFA-RIVNSCDVLLGVHGAGLA 349 (454)
Q Consensus 302 ~Ne~ev~~~l~~~gf~V~~~~~--~--~s~~eq~-~l~~~advlVGvHGAgLt 349 (454)
.|-.-+.+.+++.|++|..... + -.+.+.+ +...++|++|..=|+|.+
T Consensus 27 sN~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliittGG~s~g 79 (155)
T d2ftsa3 27 SNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMG 79 (155)
T ss_dssp CHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCSSS
T ss_pred chHHHHHHHhcccccceEEEEEecCchhHHHHHHHHhhcccCEEEEeccccCC
Confidence 3556677889999999865443 2 1233333 344679999999998866
No 33
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}
Probab=21.39 E-value=30 Score=26.34 Aligned_cols=40 Identities=5% Similarity=0.249 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCEEEEEeC--C-CCH-------HHHHHHHccCCEEEEech
Q 040560 306 KIARMARRLGFKVVVAEA--D-MRL-------SRFARIVNSCDVLLGVHG 345 (454)
Q Consensus 306 ev~~~l~~~gf~V~~~~~--~-~s~-------~eq~~l~~~advlVGvHG 345 (454)
++++.|++.|.+|.+.|| + ... ...-.....+|++|..|.
T Consensus 39 ~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~sDiII~~~~ 88 (108)
T d1dlja3 39 DVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTNRY 88 (108)
T ss_dssp HHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEECSSC
T ss_pred HHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhhCCEEEEcCC
Confidence 678888889999999998 2 111 112334567899987653
No 34
>d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.34 E-value=57 Score=28.81 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=14.6
Q ss_pred HHHHHHHHHcCCEEEEEeC
Q 040560 305 SKIARMARRLGFKVVVAEA 323 (454)
Q Consensus 305 ~ev~~~l~~~gf~V~~~~~ 323 (454)
+++++.+++.|.+|.+++.
T Consensus 23 ~~~~~~l~~~G~eV~~~DL 41 (273)
T d1d4aa_ 23 EAAAAALKKKGWEVVESDL 41 (273)
T ss_dssp HHHHHHHHHTTCEEEEEET
T ss_pred HHHHHHHHHCCCEEEEEEC
Confidence 3556677778999999886
No 35
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}
Probab=21.13 E-value=91 Score=24.51 Aligned_cols=57 Identities=21% Similarity=0.358 Sum_probs=35.7
Q ss_pred HHHccCCEEEEe--chhhhhhhcc--------cCCCcEEEEEeeCccccccccchHhHHhhCCCeEEEE
Q 040560 332 RIVNSCDVLLGV--HGAGLANIVF--------LPENAVFIQVVPIAVEWLARDYFEEPSKAMKLRYLEY 390 (454)
Q Consensus 332 ~l~~~advlVGv--HGAgLtn~lF--------l~pga~vIEi~P~g~~~~~~~~y~~~A~~~gl~Y~~y 390 (454)
+++..+|+++-. .+..+-..+| +.+|+.+|+.--...+ ......+.++..|++|+.-
T Consensus 52 e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~--~~~~~~~~~~~~g~~~vda 118 (161)
T d1vpda2 52 AIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPL--ASREISDALKAKGVEMLDA 118 (161)
T ss_dssp HHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHH--HHHHHHHHHHTTTCEEEEC
T ss_pred HHHhCCCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHH--HHHHHHHHHHHcCCceecc
Confidence 356779987765 6666665543 5788999986543211 1123445566679999763
No 36
>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}
Probab=21.11 E-value=45 Score=28.18 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=57.1
Q ss_pred ccccCHHHHHHHHHHcCCEEEEEeC-C--CCHHH------------HHHHHccCCEEEEechhhhhhhcccCCCcEEEEE
Q 040560 299 RTFTNASKIARMARRLGFKVVVAEA-D--MRLSR------------FARIVNSCDVLLGVHGAGLANIVFLPENAVFIQV 363 (454)
Q Consensus 299 R~i~Ne~ev~~~l~~~gf~V~~~~~-~--~s~~e------------q~~l~~~advlVGvHGAgLtn~lFl~pga~vIEi 363 (454)
+|+.=..|.++.+.+.|++|.+-.- + ..|.+ ....+.++|+++.+..--....=.|++|+++|-+
T Consensus 14 ~RValtP~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~~~diilkv~~p~~~e~~~lk~~~~li~~ 93 (193)
T d1pjca2 14 FRVGLSPSSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAWSREMVVKVKEPLPAEYDLMQKDQLLFTY 93 (193)
T ss_dssp CCCSCCHHHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHHTSSEEECSSCCCGGGGGGCCTTCEEEEC
T ss_pred cEeccCHHHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeeccccccccceEEEeccCCHHHHHhhhcCceEEEe
Confidence 3444445666666778999975443 1 11211 1234446899999999888888999999999987
Q ss_pred eeCccccccccchHhHHhhCCCeEEEEEecccc
Q 040560 364 VPIAVEWLARDYFEEPSKAMKLRYLEYKIKAEE 396 (454)
Q Consensus 364 ~P~g~~~~~~~~y~~~A~~~gl~Y~~y~~~~~E 396 (454)
+-... .......+ ..-|+.=+.|..-+..
T Consensus 94 l~p~~---~~ell~~l-~~~~it~~s~E~ipr~ 122 (193)
T d1pjca2 94 LHLAA---ARELTEQL-MRVGLTAIAYETVELP 122 (193)
T ss_dssp CCGGG---CHHHHHHH-HHHTCEEEEGGGCCCT
T ss_pred cCccc---chHHHHHH-HHcCCEEEEeeecccc
Confidence 63211 11223333 3457766665544443
No 37
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.05 E-value=53 Score=24.93 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=25.0
Q ss_pred cEEEEEEeCCCccccCHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHc
Q 040560 288 PRLLIISRKRTRTFTNASKIARMARRLGFKVVVAEADMRLSRFARIVN 335 (454)
Q Consensus 288 prl~~i~R~~~R~i~Ne~ev~~~l~~~gf~V~~~~~~~s~~eq~~l~~ 335 (454)
||+++|+=.. .+.+.+.+.|++.||+|..++ +-.|-++.+.
T Consensus 2 PkILiVDD~~----~~~~~l~~~L~~~g~~v~~a~---~~~eal~~~~ 42 (121)
T d1ys7a2 2 PRVLVVDDDS----DVLASLERGLRLSGFEVATAV---DGAEALRSAT 42 (121)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTCEEEEES---SHHHHHHHHH
T ss_pred CEEEEEECCH----HHHHHHHHHHHHCCCEEEEEC---CHHHHHHHHH
Confidence 7888887431 122345567777899998765 4445455444
Done!