BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040562
(427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 120/318 (37%), Gaps = 61/318 (19%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y I++GTPP + DTGS +W C C+ +D +
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASS-------- 63
Query: 150 XXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS------GQAVALPEI 203
S A G +++ YG S G ++ +T+++G + +A + P +
Sbjct: 64 ----------SYKANG-TEFAIQYGTGSLE-GYISQDTLSIGDLTIPKQDFAEATSEPGL 111
Query: 204 VFGCGTKNGGKFNSKTDGIVGLGGGDASLIS---------QMKTTIAGKFSYCLVQQSST 254
F G K DGI+GLG S+ Q +F++ L S
Sbjct: 112 TFAFG---------KFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKD 162
Query: 255 KINFGT---NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVI 311
N G GI L K ++ + + I +GD+ + S I
Sbjct: 163 TENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHG-----AAI 217
Query: 312 DSGTTLTYLPPAYASKLLSVMSSMIAAQP-VEGPYDLCYSISSRPRFPEVTIHFRDADVK 370
D+GT+L LP S L ++++ I A+ G Y L ++R P++ +F +
Sbjct: 218 DTGTSLITLP----SGLAEMINAEIGAKKGWTGQYTL--DCNTRDNLPDLIFNFNGYNFT 271
Query: 371 LSTSNVFMNISEDLVCSV 388
+ + + +S + ++
Sbjct: 272 IGPYDYTLEVSGSCISAI 289
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 120/318 (37%), Gaps = 61/318 (19%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y I++GTPP + DTGS +W C C+ +D +
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASS-------- 63
Query: 150 XXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS------GQAVALPEI 203
S A G +++ YG S G ++ +T+++G + +A + P +
Sbjct: 64 ----------SYKANG-TEFAIQYGTGSLE-GYISQDTLSIGDLTIPKQDFAEATSEPGL 111
Query: 204 VFGCGTKNGGKFNSKTDGIVGLGGGDASLIS---------QMKTTIAGKFSYCLVQQSST 254
F G K DGI+GLG S+ Q +F++ L S
Sbjct: 112 TFAFG---------KFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKD 162
Query: 255 KINFGT---NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVI 311
N G GI L K ++ + + I +GD+ + S I
Sbjct: 163 TENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHG-----AAI 217
Query: 312 DSGTTLTYLPPAYASKLLSVMSSMIAAQP-VEGPYDLCYSISSRPRFPEVTIHFRDADVK 370
D+GT+L LP S L ++++ I A+ G Y L ++R P++ +F +
Sbjct: 218 DTGTSLITLP----SGLAEMINAEIGAKKGWTGQYTL--DCNTRDNLPDLIFNFNGYNFT 271
Query: 371 LSTSNVFMNISEDLVCSV 388
+ + + +S + ++
Sbjct: 272 IGPYDYTLEVSGSCISAI 289
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 120/318 (37%), Gaps = 61/318 (19%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y I++GTPP + DTGS +W C C+ +D +
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASS-------- 63
Query: 150 XXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS------GQAVALPEI 203
S A G +++ YG S G ++ +T+++G + +A + P +
Sbjct: 64 ----------SYKANG-TEFAIQYGTGSLE-GYISQDTLSIGDLTIPKQDFAEATSEPGL 111
Query: 204 VFGCGTKNGGKFNSKTDGIVGLGGGDASLIS---------QMKTTIAGKFSYCLVQQSST 254
F G K DGI+GLG S+ Q +F++ L S
Sbjct: 112 TFAFG---------KFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKD 162
Query: 255 KINFGT---NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVI 311
N G GI L K ++ + + I +GD+ + S I
Sbjct: 163 TENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHG-----AAI 217
Query: 312 DSGTTLTYLPPAYASKLLSVMSSMIAAQP-VEGPYDLCYSISSRPRFPEVTIHFRDADVK 370
D+GT+L LP S L ++++ I A+ G Y L ++R P++ +F +
Sbjct: 218 DTGTSLITLP----SGLAEMINAEIGAKKGSTGQYTL--DCNTRDNLPDLIFNFNGYNFT 271
Query: 371 LSTSNVFMNISEDLVCSV 388
+ + + +S + ++
Sbjct: 272 IGPYDYTLEVSGSCISAI 289
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/357 (22%), Positives = 134/357 (37%), Gaps = 71/357 (19%)
Query: 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXXX 150
Y ISIGTPP L + DTGS +W C C F+P
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSR--FNPS------------ 59
Query: 151 XQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTK 210
+ S + +S+ YG S + G +T+TV Q++ +P FG
Sbjct: 60 -------ESSTYSTNGQTFSLQYGSGSLT-GFFGYDTLTV-----QSIQVPNQEFGLSEN 106
Query: 211 NGGK--FNSKTDGIVGLGGGDASLISQMKTTIAGK----------FSYCLVQQSSTKINF 258
G ++ DGI+GL S + + T + G FS L Q +
Sbjct: 107 EPGTNFVYAQFDGIMGLAYPALS-VDEATTAMQGMVQEGALTSPVFSVYLSNQQGS---- 161
Query: 259 GTNGIVSGSGVVSTPLLAK------NPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVID 312
+ G V GV S+ + + ++ + ++ +G Q G S G ++D
Sbjct: 162 -SGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCS---EGCQAIVD 217
Query: 313 SGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPY-DLCYSISSRPRFPEVTIHFRDADVKL 371
+GT+L +P Y S LL + E Y + +S P +T + L
Sbjct: 218 TGTSLLTVPQQYMSALLQATGAQ------EDEYGQFLVNCNSIQNLPSLTFIINGVEFPL 271
Query: 372 STSNVFMNISEDLVCSV------FNARDDIPLY--GNIMQTNFLIGYDIEGRTVSFK 420
S+ + S + C+V ++++ PL+ G++ ++ YD+ V F
Sbjct: 272 PPSSYIL--SNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFA 326
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 117/279 (41%), Gaps = 49/279 (17%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y +I IGTPP E V DTGS +W C + C +++ FDP++
Sbjct: 12 QYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVC--KNHHRFDPRK-------SST 62
Query: 150 XXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGT 209
P+ S+ YG S G L +TVTV + + P G T
Sbjct: 63 FRNLGKPL------------SIHYGTGSME-GFLGYDTVTVSN-----IVDPNQTVGLST 104
Query: 210 KNGGKF--NSKTDGIVGLGGGDASLISQ---------MKTTIAGKFSYCLVQQSSTKINF 258
+ G+ S+ DGI+GL SL S+ M + + + + + + +
Sbjct: 105 EQPGEVFTYSEFDGILGL--AYPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRNGQGSM 162
Query: 259 GTNGIVSGSGVV-STPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTL 317
T G + S S + + ++ T+D++++ GV G ++D+GT++
Sbjct: 163 LTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDSVTIN----GVAVACVGGCQAILDTGTSV 218
Query: 318 TYLPPAYASKLLSVMSSMIAAQPVEGPYDL-CYSISSRP 355
+ P +S +L + ++ A + G +D+ C ++ S P
Sbjct: 219 LFGP---SSDILKIQMAIGATENRYGEFDVNCGNLRSMP 254
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 113/285 (39%), Gaps = 59/285 (20%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
EY ISIG+PP + DTGS +W C C + + F P
Sbjct: 24 EYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPAC--KTHSRFQPS----------- 70
Query: 150 XXQCAPPIKDSCSAEGNCRYSVSYGDDSFSN----GDLATETVT-VGSTSGQAVALPEIV 204
+ S ++ +S+ YG S S ++ E +T VG G++V P
Sbjct: 71 --------QSSTYSQPGQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQT 122
Query: 205 FGCGTKNGGKFNSKTDGIVGLG------GGDASLISQMKTTIAGKFSYCLVQQSS----- 253
F +++ DGI+GLG GG + M V SS
Sbjct: 123 F---------VDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGG 173
Query: 254 --TKINFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVI 311
+++ FG SG ++ + K + ++ + LD I VG G + + G ++
Sbjct: 174 AGSELIFGGYDHSHFSGSLNWVPVTK--QAYWQIALDNIQVG----GTVMFCSEGCQAIV 227
Query: 312 DSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDL-CYSISSRP 355
D+GT+L P S + + + I A PV+G Y + C +++ P
Sbjct: 228 DTGTSLITGP----SDKIKQLQNAIGAAPVDGEYAVECANLNVMP 268
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 88/386 (22%), Positives = 151/386 (39%), Gaps = 61/386 (15%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y+ I+ TP V V D G +W C S Y+ P R
Sbjct: 21 QYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYR-------PVRCRTSQCSLSG 73
Query: 150 XXQCAPPI---KDSCSAEGNCRYSVSYGDDSFSNGDLATETVTV----GSTSGQAVALPE 202
C + C+ + + ++ + G++A + V+V GS+SG+ V +P
Sbjct: 74 SIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPR 133
Query: 203 IVFGCG-TKNGGKFNSKTDGIVGLGGGDASLISQMKTTIA--GKFSYCLVQQSSTK--IN 257
+F C T S G+ GLG +L SQ + + KF+ CL +S+ I
Sbjct: 134 FIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVII 193
Query: 258 FGT-------NGIVSGSGVVSTPLLAK-----------NPKTFYSLTLDAISVGDQRLG- 298
FG N IVS + TPLL P Y + + +I + + +
Sbjct: 194 FGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVAL 253
Query: 299 ---VISGSNPG-GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE-----GPYDLCY 349
++S S+ G G I + T L + + AA+ + P+ C+
Sbjct: 254 NTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACF 313
Query: 350 S----ISSR--PRFPEVTIHFRDADV--KLSTSNVFMNISEDLVCSVF-----NARDDIP 396
S +S+R P P + + + V ++ SN + I++++VC N R I
Sbjct: 314 STDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIV 373
Query: 397 LYGNIMQTNFLIGYDIEGRTVSFKPT 422
+ G+ ++ N L+ +D+ V F T
Sbjct: 374 IGGHQLEDN-LVQFDLATSRVGFSGT 398
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 88/386 (22%), Positives = 151/386 (39%), Gaps = 61/386 (15%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y+ I+ TP V V D G +W C S Y+ P R
Sbjct: 21 QYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYR-------PVRCRTSQCSLSG 73
Query: 150 XXQCAPPI---KDSCSAEGNCRYSVSYGDDSFSNGDLATETVTV----GSTSGQAVALPE 202
C + C+ + + ++ + G++A + V+V GS+SG+ V +P
Sbjct: 74 SIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPR 133
Query: 203 IVFGCG-TKNGGKFNSKTDGIVGLGGGDASLISQMKTTIA--GKFSYCLVQQSSTK--IN 257
+F C T S G+ GLG +L SQ + + KF+ CL +S+ I
Sbjct: 134 FIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVII 193
Query: 258 FGT-------NGIVSGSGVVSTPLLAK-----------NPKTFYSLTLDAISVGDQRLG- 298
FG N IVS + TPLL P Y + + +I + + +
Sbjct: 194 FGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVAL 253
Query: 299 ---VISGSNPG-GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE-----GPYDLCY 349
++S S+ G G I + T L + + AA+ + P+ C+
Sbjct: 254 NTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACF 313
Query: 350 S----ISSR--PRFPEVTIHFRDADV--KLSTSNVFMNISEDLVCSVF-----NARDDIP 396
S +S+R P P + + + V ++ SN + I++++VC N R I
Sbjct: 314 STDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIV 373
Query: 397 LYGNIMQTNFLIGYDIEGRTVSFKPT 422
+ G+ ++ N L+ +D+ V F T
Sbjct: 374 IGGHQLEDN-LVQFDLATSRVGFSGT 398
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 135/341 (39%), Gaps = 68/341 (19%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIW---TQCQPCPPSQCYKQDNPLFDPQRXXXXXXX 146
EY +++IGTP + DTGS +W T C C Q +DP +
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQTK------YDPNQSS----- 64
Query: 147 XXXXXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGS--TSGQAVALPEIV 204
+ A+G +S+SYGD S ++G LA + V +G GQ + L +
Sbjct: 65 -------------TYQADGRT-WSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAK-- 108
Query: 205 FGCGTKNGGKFNSK-TDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGT--- 260
+ F S DG++GLG + + +KT + S L+ + + G
Sbjct: 109 -----REAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKN 163
Query: 261 -----------NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDI 309
+ + + P+ N + ++ +T+D +VG ++ S G
Sbjct: 164 GGGGEYIFGGYDSTKFKGSLTTVPI--DNSRGWWGITVDRATVGTS---TVASSFDG--- 215
Query: 310 VIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADV 369
++D+GTTL LP A+ SV + A+ +G Y + S RF + A
Sbjct: 216 ILDTGTTLLILPNNIAA---SVARAYGASDNGDGTYTISCDTS---RFKPLVFSINGASF 269
Query: 370 KLS-TSNVFMNISEDLVCSVFNARDDIPLYGN-IMQTNFLI 408
++S S VF + D + G+ ++ N+++
Sbjct: 270 QVSPDSLVFEEFQGQCIAGFGYGNWDFAIIGDTFLKNNYVV 310
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 117/279 (41%), Gaps = 49/279 (17%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y +I +GTPP E + DTGS W C + C +++ FDP++
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNAC--KNHQRFDPRK-------SST 65
Query: 150 XXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGT 209
P+ S+ YG S G L +TVTV + V + + V G T
Sbjct: 66 FQNLGKPL------------SIHYGTGSM-QGILGYDTVTVSNI----VDIQQTV-GLST 107
Query: 210 KNGGKF--NSKTDGIVGLGGGDASLISQMKTTI-AGKFSYCLVQQSSTKINFGTNGIVS- 265
+ G F ++ DGI+G+ SL S+ + + LV Q + NG S
Sbjct: 108 QEPGDFFTYAEFDGILGMAY--PSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESM 165
Query: 266 -GSGVV-------STPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTL 317
G + S + + ++ T+D++++ GV+ G ++D+GT+
Sbjct: 166 LTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTIS----GVVVACEGGCQAILDTGTSK 221
Query: 318 TYLPPAYASKLLSVMSSMIAAQPVEGPYDL-CYSISSRP 355
P +S +L++ ++ A Q G +D+ C ++S P
Sbjct: 222 LVGP---SSDILNIQQAIGATQNQYGEFDIDCDNLSYMP 257
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 120/288 (41%), Gaps = 66/288 (22%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIW---TQCQPCPPSQCYKQDNPLFDPQRXXXXXXX 146
EY +++IGTP + DTGS +W T C C Q +DP +
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTK------YDPNQ------- 62
Query: 147 XXXXXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGS--TSGQAVALPEIV 204
+ A+G +S+SYGD S ++G LA + V +G GQ + L +
Sbjct: 63 -----------SSTYQADGRT-WSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAK-- 108
Query: 205 FGCGTKNGGKFNSK-TDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGT--- 260
+ F S DG++GLG + + +KT + S L+ + + G
Sbjct: 109 -----REAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKN 163
Query: 261 ------------NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGD 308
+ GS + + P+ N + ++ +T+D +VG ++ S G
Sbjct: 164 GGGGEYIFGGYDSTKFKGS-LTTVPI--DNSRGWWGITVDRATVGTS---TVASSFDG-- 215
Query: 309 IVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDL-CYSISSRP 355
++D+GTTL LP A+ SV + A+ +G Y + C + + +P
Sbjct: 216 -ILDTGTTLLILPNNIAA---SVARAYGASDNGDGTYTISCDTSAFKP 259
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 32/231 (13%)
Query: 221 GIVGLGGGDASLISQMKTT--IAGKFSYCLVQQSSTKINFGTNGIVSGSGVVS---TPLL 275
G+ GL +L +Q+ + +A +F CL FG + S TPL+
Sbjct: 139 GVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLV 198
Query: 276 AKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSM 335
K + ++ +I VGD R+ V G+ G +++ + L P L+ +
Sbjct: 199 TKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKA 258
Query: 336 IAAQPVEG-----------PYDLCYSISSRPR------FPEVTIHFR-DADVKLSTSNVF 377
+AAQ G P+ +CY + P V + +D ++ N
Sbjct: 259 LAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSM 318
Query: 378 MNISEDLVCSVF---------NARDDIPLYGNIMQTNFLIGYDIEGRTVSF 419
+++ + C F + R + G +F++ +D+E + + F
Sbjct: 319 VDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGF 369
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/350 (21%), Positives = 123/350 (35%), Gaps = 58/350 (16%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
EY ISIGTPP + DTGS +W C C + F P++
Sbjct: 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNK--FKPRQ---------- 60
Query: 150 XXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGT 209
S E ++YG G L +TV+VG S P G
Sbjct: 61 ---------SSTYVETGKTVDLTYGTGGM-RGILGQDTVSVGGGSD-----PNQELGESQ 105
Query: 210 KNGGKFNSKT--DGIVGL------GGGDASLISQMKT-TIAGK--FSYCLVQQSSTKINF 258
G F + DGI+GL G + M + ++ K FS+ L +
Sbjct: 106 TEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEV 165
Query: 259 GTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLT 318
G+ + S + + ++ + LD I+V Q + + G ++D+GT+
Sbjct: 166 MLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQ-----TAACEGCQAIVDTGTSKI 220
Query: 319 YLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFM 378
P S L ++M + A++ C S+ S P++T L S
Sbjct: 221 VAP---VSALANIMKDIGASENQGEMMGNCASVQS---LPDITFTINGVKQPLPPSAYIE 274
Query: 379 NISEDLVCSVFNARDDIP-------LYGNIMQTNFLIGYDIEGRTVSFKP 421
+ C+ +P ++G++ N+ YD V F P
Sbjct: 275 G--DQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAP 322
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 104/262 (39%), Gaps = 49/262 (18%)
Query: 91 YLIRISIGTPPVEILAVADTGSDLIWT--QCQPCPPSQCYKQDNPLFDPQRXXXXXXXXX 148
Y I++G+ ++ + DTGS +W C P ++ D F
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPK--WRGDKGDF------------C 59
Query: 149 XXXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
P S N R+ + YGD S++ G L +TV +G S + +
Sbjct: 60 KSAGSYSPASSRTSQNLNTRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANVWSTSA 119
Query: 209 TKNGGKFNSKTDGIVGLG--GGDASL-------ISQMKTTIAGKFSYCL----VQQSSTK 255
K GI+G+G G+A+ IS I GK +Y L + S+ +
Sbjct: 120 RK----------GILGIGFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQ 169
Query: 256 INFGTNGIVSGSG-VVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSG 314
I FG SG +V P+ ++ LT+ SV + V + +N +++DSG
Sbjct: 170 IIFGGIDKAKYSGSLVDLPITSEKK-----LTVGLRSVNVRGRNVDANTN----VLLDSG 220
Query: 315 TTLTYLPPAYASKLLSVMSSMI 336
TT++Y + +L + + +
Sbjct: 221 TTISYFTRSIVRNILYAIGAQM 242
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 116/279 (41%), Gaps = 49/279 (17%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y +I +GTPP E + DTGS W C + C +++ FDP++
Sbjct: 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNAC--KNHQRFDPRK-------SST 65
Query: 150 XXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGT 209
P+ S+ YG S G L +TVTV + V + + V G T
Sbjct: 66 FQNLGKPL------------SIHYGTGSM-QGILGYDTVTVSNI----VDIQQTV-GLST 107
Query: 210 KNGGKF--NSKTDGIVGLGGGDASLISQMKTTI-AGKFSYCLVQQSSTKINFGTNGIVS- 265
+ G ++ DGI+G+ SL S+ + + LV Q + NG S
Sbjct: 108 QEPGDVFTYAEFDGILGMAY--PSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESM 165
Query: 266 -GSGVV-------STPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTL 317
G + S + + ++ T+D++++ GV+ G ++D+GT+
Sbjct: 166 LTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTIS----GVVVACEGGCQAILDTGTSK 221
Query: 318 TYLPPAYASKLLSVMSSMIAAQPVEGPYDL-CYSISSRP 355
P +S +L++ ++ A Q G +D+ C ++S P
Sbjct: 222 LVGP---SSDILNIQQAIGATQNQYGEFDIDCDNLSYMP 257
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 132/351 (37%), Gaps = 58/351 (16%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
EY I IGTP + + DTGS +W C C D+ F+P
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLAC--SDHNQFNP------------ 58
Query: 150 XXQCAPPIKDSCSAEGNCR-YSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
DS + E + S++YG S + G L +TV VG ++ +FG
Sbjct: 59 --------DDSSTFEATSQELSITYGTGSMT-GILGYDTVQVG-----GISDTNQIFGLS 104
Query: 209 TKNGGKF--NSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTN----- 261
G F + DGI+GL S S + LV Q + +N
Sbjct: 105 ETEPGSFLYYAPFDGILGLAYPSISA-SGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGS 163
Query: 262 -----GIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTT 316
GI S S + + + ++ +TLD+I++ + + G ++D+GT+
Sbjct: 164 VVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQA----IVDTGTS 219
Query: 317 LTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNV 376
L P S + ++ S + A++ +G ++ S SS P++ LS S
Sbjct: 220 LLTGP---TSAIANIQSDIGASENSDG--EMVISCSSIASLPDIVFTINGVQYPLSPSAY 274
Query: 377 FMNISEDLVCSVFNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKP 421
+ +D S F D ++ + G++ + +D V P
Sbjct: 275 ILQ-DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP 324
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 132/351 (37%), Gaps = 58/351 (16%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
EY I IGTP + + DTGS +W C C D+ F+P
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLAC--SDHNQFNP------------ 58
Query: 150 XXQCAPPIKDSCSAEGNCR-YSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
DS + E + S++YG S + G L +TV VG ++ +FG
Sbjct: 59 --------DDSSTFEATSQELSITYGTGSMT-GILGYDTVQVG-----GISDTNQIFGLS 104
Query: 209 TKNGGKF--NSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTN----- 261
G F + DGI+GL S S + LV Q + +N
Sbjct: 105 ETEPGSFLYYAPFDGILGLAYPSISA-SGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGS 163
Query: 262 -----GIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTT 316
GI S S + + + ++ +TLD+I++ + + G ++D+GT+
Sbjct: 164 VVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQA----IVDTGTS 219
Query: 317 LTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNV 376
L P S + ++ S + A++ +G ++ S SS P++ LS S
Sbjct: 220 LLTGP---TSAIANIQSDIGASENSDG--EMVISCSSIDSLPDIVFTINGVQYPLSPSAY 274
Query: 377 FMNISEDLVCSVFNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKP 421
+ +D S F D ++ + G++ + +D V P
Sbjct: 275 ILQ-DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP 324
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 132/351 (37%), Gaps = 58/351 (16%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
EY I IGTP + + DTGS +W C C D+ F+P
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLAC--SDHNQFNP------------ 58
Query: 150 XXQCAPPIKDSCSAEGNCR-YSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
DS + E + S++YG S + G L +TV VG ++ +FG
Sbjct: 59 --------DDSSTFEATXQELSITYGTGSMT-GILGYDTVQVG-----GISDTNQIFGLS 104
Query: 209 TKNGGKF--NSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTN----- 261
G F + DGI+GL S S + LV Q + +N
Sbjct: 105 ETEPGSFLYYAPFDGILGLAYPSISA-SGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGS 163
Query: 262 -----GIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTT 316
GI S S + + + ++ +TLD+I++ + + G ++D+GT+
Sbjct: 164 VVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQA----IVDTGTS 219
Query: 317 LTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNV 376
L P S + ++ S + A++ +G ++ S SS P++ LS S
Sbjct: 220 LLTGP---TSAIANIQSDIGASENSDG--EMVISCSSIDSLPDIVFTINGVQYPLSPSAY 274
Query: 377 FMNISEDLVCSVFNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKP 421
+ +D S F D ++ + G++ + +D V P
Sbjct: 275 ILQ-DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP 324
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 132/351 (37%), Gaps = 58/351 (16%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
EY I IGTP + + DTGS +W C C D+ F+P
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLAC--SDHNQFNP------------ 102
Query: 150 XXQCAPPIKDSCSAEGNCR-YSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
DS + E + S++YG S + G L +TV VG ++ +FG
Sbjct: 103 --------DDSSTFEATSQELSITYGTGSMT-GILGYDTVQVG-----GISDTNQIFGLS 148
Query: 209 TKNGGKF--NSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTN----- 261
G F + DGI+GL S S + LV Q + +N
Sbjct: 149 ETEPGSFLYYAPFDGILGLAYPSIS-ASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGS 207
Query: 262 -----GIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTT 316
GI S S + + + ++ +TLD+I++ + + G ++D+GT+
Sbjct: 208 VVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQA----IVDTGTS 263
Query: 317 LTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNV 376
L P S + ++ S + A++ +G ++ S SS P++ LS S
Sbjct: 264 LLTGP---TSAIANIQSDIGASENSDG--EMVISCSSIDSLPDIVFTIDGVQYPLSPSAY 318
Query: 377 FMNISEDLVCSVFNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKP 421
+ +D S F D ++ + G++ + +D V P
Sbjct: 319 ILQ-DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP 368
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 132/351 (37%), Gaps = 58/351 (16%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
EY I IGTP + + DTGS +W C C D+ F+P
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLAC--SDHNQFNP------------ 102
Query: 150 XXQCAPPIKDSCSAEGNCR-YSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
DS + E + S++YG S + G L +TV VG ++ +FG
Sbjct: 103 --------DDSSTFEATXQELSITYGTGSMT-GILGYDTVQVG-----GISDTNQIFGLS 148
Query: 209 TKNGGKF--NSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTN----- 261
G F + DGI+GL S S + LV Q + +N
Sbjct: 149 ETEPGSFLYYAPFDGILGLAYPSIS-ASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGS 207
Query: 262 -----GIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTT 316
GI S S + + + ++ +TLD+I++ + + G ++D+GT+
Sbjct: 208 VVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQA----IVDTGTS 263
Query: 317 LTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNV 376
L P S + ++ S + A++ +G ++ S SS P++ LS S
Sbjct: 264 LLTGP---TSAIANIQSDIGASENSDG--EMVISCSSIDSLPDIVFTIDGVQYPLSPSAY 318
Query: 377 FMNISEDLVCSVFNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKP 421
+ +D S F D ++ + G++ + +D V P
Sbjct: 319 ILQ-DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP 368
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 141/360 (39%), Gaps = 84/360 (23%)
Query: 91 YLIRISIGTPPVEILAVADTGSDLIW-----TQCQPCPPSQC--YKQDNPLFDPQRXXXX 143
Y I +G+ + V DTGS +W +CQ Q + + FDP
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSS---- 69
Query: 144 XXXXXXXXQCAPPIKDSCSAEG-NCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPE 202
S SA+ N +S+ YGD + S G +TV G S + +
Sbjct: 70 ----------------SSSAQNLNQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFAD 113
Query: 203 IVFGCGTKNGGKFNSKTDGIVGLG-----GG----DASLISQMKTTIAGKFSYCLV---- 249
+ S GI+G+G G D ++ K I K +Y L
Sbjct: 114 VTT----------TSVDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSE 163
Query: 250 QQSSTKINFG--TNGIVSGSGVVSTPLLAKNPKTFY--SLTLDAISVGDQRLGVISGSNP 305
S+ KI FG N +G+ + + P+ + + S+ D SV +
Sbjct: 164 DASTGKIIFGGVDNAKYTGT-LTALPVTSSVELRVHLGSINFDGTSV-----------ST 211
Query: 306 GGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFR 365
D+V+DSGTT+TY + A K ++ + ++ + Y + S + +F
Sbjct: 212 NADVVLDSGTTITYFSQSTADKFARIVGATWDSR------NEIYRLPSCDLSGDAVFNF- 264
Query: 366 DADVKLST--SNVFMNISEDLVCSVFNARDDIPLYGNIMQTNFL----IGYDIEGRTVSF 419
D VK++ S + + S+ +C +R+D NI+ NFL I YD++ +T+S
Sbjct: 265 DQGVKITVPLSELILKDSDSSICYFGISRND----ANILGDNFLRRAYIVYDLDDKTISL 320
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 132/351 (37%), Gaps = 58/351 (16%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
EY I IGTP + + DTGS +W C C D+ F+P
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLAC--SDHNQFNP------------ 58
Query: 150 XXQCAPPIKDSCSAEGNCR-YSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
DS + E + S++YG S + G L +TV VG ++ +FG
Sbjct: 59 --------DDSSTFEATSQELSITYGTGSMT-GILGYDTVQVG-----GISDTNQIFGLS 104
Query: 209 TKNGGKF--NSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTN----- 261
G F + DGI+GL S S + LV Q + +N
Sbjct: 105 ETEPGSFLYYAPFDGILGLAYPSISA-SGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGS 163
Query: 262 -----GIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTT 316
GI S S + + + ++ +TLD+I++ + + G ++D+GT+
Sbjct: 164 VVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQA----IVDTGTS 219
Query: 317 LTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNV 376
L P S + ++ S + A++ +G ++ S SS P++ LS S
Sbjct: 220 LLTGP---TSAIANIQSDIGASENSDG--EMVISCSSIDSLPDIVFTIDGVQYPLSPSAY 274
Query: 377 FMNISEDLVCSVFNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKP 421
+ +D S F D ++ + G++ + +D V P
Sbjct: 275 ILQ-DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP 324
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 132/351 (37%), Gaps = 58/351 (16%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
EY I IGTP + + DTGS +W C C D+ F+P
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLAC--SDHNQFNP------------ 58
Query: 150 XXQCAPPIKDSCSAEGNCR-YSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
DS + E + S++YG S + G L +TV VG ++ +FG
Sbjct: 59 --------DDSSTFEATXQELSITYGTGSMT-GILGYDTVQVG-----GISDTNQIFGLS 104
Query: 209 TKNGGKF--NSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTN----- 261
G F + DGI+GL S S + LV Q + +N
Sbjct: 105 ETEPGSFLYYAPFDGILGLAYPSISA-SGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGS 163
Query: 262 -----GIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTT 316
GI S S + + + ++ +TLD+I++ + + G ++D+GT+
Sbjct: 164 VVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQA----IVDTGTS 219
Query: 317 LTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNV 376
L P S + ++ S + A++ +G ++ S SS P++ LS S
Sbjct: 220 LLTGP---TSAIANIQSDIGASENSDG--EMVISCSSIDSLPDIVFTIDGVQYPLSPSAY 274
Query: 377 FMNISEDLVCSVFNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKP 421
+ +D S F D ++ + G++ + +D V P
Sbjct: 275 ILQ-DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP 324
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 105/260 (40%), Gaps = 45/260 (17%)
Query: 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXXX 150
Y I++G+ ++ + DTGS +W Y F Q+
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADFCKQKGTY-------- 65
Query: 151 XQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTK 210
P S S + N +S+ YGD S S G L +TV G S + L ++
Sbjct: 66 ----DPSGSSASQDLNTPFSIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADV------- 114
Query: 211 NGGKFNSKTDGIVGLG------GG--DASLISQMKTTIAGKFSYCLVQQS----STKINF 258
S GI+G+G GG D ++ K + K +Y L S + +I F
Sbjct: 115 ---DSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDSATGQIIF 171
Query: 259 G--TNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTT 316
G N SGS +++ P+ + ++L ++ V + + + D+++DSGTT
Sbjct: 172 GGVDNAKYSGS-LIALPVTSDRE---LRISLGSVEVSGKTI-----NTDNVDVLLDSGTT 222
Query: 317 LTYLPPAYASKLLSVMSSMI 336
+TYL A +++ + +
Sbjct: 223 ITYLQQDLADQIIKAFNGKL 242
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 107/264 (40%), Gaps = 65/264 (24%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
EY+ ++IG + + DTGS +W P SQ + + +++P
Sbjct: 16 EYITPVTIGGTTLNL--NFDTGSADLWVFSTELPASQ--QSGHSVYNPSATGKELS---- 67
Query: 150 XXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVG--STSGQAVALPEIVFGC 207
+S+SYGD S ++G++ T++VTVG + GQAV + +
Sbjct: 68 ----------------GYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQI--- 108
Query: 208 GTKNGGKFNSKT--DGIVGLG---------GGDASLISQMKTTIAGK-FSYCLVQQSSTK 255
+F T DG++GL + +K+++A F+ L Q
Sbjct: 109 ----SAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSSLAQPLFAVALKHQQPGV 164
Query: 256 INFG------TNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDI 309
+FG G ++ +GV N + F+S +D+ + G Q SG
Sbjct: 165 YDFGFIDSSKYTGSLTYTGV-------DNSQGFWSFNVDSYTAGSQSGDGFSG------- 210
Query: 310 VIDSGTTLTYLPPAYASKLLSVMS 333
+ D+GTTL L + S+ S +S
Sbjct: 211 IADTGTTLLLLDDSVVSQYYSQVS 234
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 100/257 (38%), Gaps = 47/257 (18%)
Query: 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXXX 150
Y I++G+ ++ V DTGS +W P SQ Q DP
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLW-----VPDSQVSCQAGQGQDPNFCKNEGTYSPSS 68
Query: 151 XQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTK 210
+ + N +S+ YGD + S G +T+ G S ++
Sbjct: 69 SSSSQNL--------NSPFSIEYGDGTTSQGTWYKDTIGFGGISITKQQFADVTS----- 115
Query: 211 NGGKFNSKTDGIVGLG--------GGDASLISQMKTTIAGKFSYCLV----QQSSTKINF 258
S GI+G+G D ++ I K +Y L Q +S +I F
Sbjct: 116 -----TSVDQGILGIGYKTHEAEGNYDNVPVTLKNQGIISKNAYSLYLNSRQATSGQIIF 170
Query: 259 G--TNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTT 316
G N SG+ +++ P+ + N + L+ + V Q + N D+++DSGTT
Sbjct: 171 GGVDNAKYSGT-LIALPVTSDNELRIH---LNTVKVAGQSI------NADVDVLLDSGTT 220
Query: 317 LTYLPPAYASKLLSVMS 333
+TYL A +++S +
Sbjct: 221 ITYLQQGVADQVISAFN 237
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 104/260 (40%), Gaps = 45/260 (17%)
Query: 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXXX 150
Y I++G+ ++ + DTGS +W Y F Q+
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTY-------- 65
Query: 151 XQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTK 210
P S S + N + + YGD S S G L +TV G S + L ++
Sbjct: 66 ----DPSGSSASQDLNTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADV------- 114
Query: 211 NGGKFNSKTDGIVGLG------GG--DASLISQMKTTIAGKFSYCLVQQS----STKINF 258
S GI+G+G GG D ++ K + K +Y L S + +I F
Sbjct: 115 ---DSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIF 171
Query: 259 G--TNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTT 316
G N SGS +++ P+ + ++L ++ V + + + D+++DSGTT
Sbjct: 172 GGVDNAKYSGS-LIALPVTSDRE---LRISLGSVEVSGKTI-----NTDNVDVLLDSGTT 222
Query: 317 LTYLPPAYASKLLSVMSSMI 336
+TYL A +++ + +
Sbjct: 223 ITYLQQDLADQIIKAFNGKL 242
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 32/231 (13%)
Query: 221 GIVGLGGGDASLISQMKTT--IAGKFSYCLVQQSSTKINFGTNGIVSGSGVVS---TPLL 275
G+ GL +L +Q+ + +A +F CL FG + S TPL+
Sbjct: 139 GVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLV 198
Query: 276 AKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSM 335
K + ++ +I VGD R+ V G+ G +++ + L P L+ +
Sbjct: 199 TKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKA 258
Query: 336 IAAQPVEG-----------PYDLCYSISSRPR------FPEVTIHFR-DADVKLSTSNVF 377
+AAQ G P+ +CY + P V + +D ++ N
Sbjct: 259 LAAQHANGAPVARAVVAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSM 318
Query: 378 MNISEDLVCSVF---------NARDDIPLYGNIMQTNFLIGYDIEGRTVSF 419
+++ + C F + R + G +F++ +D+E + + F
Sbjct: 319 VDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGF 369
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 67/328 (20%), Positives = 124/328 (37%), Gaps = 63/328 (19%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y I IGTPP + DTGS +W C + L++
Sbjct: 16 QYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIHSLYESS----------- 64
Query: 150 XXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVG-----STSGQAVALPEIV 204
S E +++ YG G L+ ++VTVG T G+ LP I
Sbjct: 65 --------DSSSYMENGDDFTIHYGSGRV-KGFLSQDSVTVGGITVTQTFGEVTQLPLIP 115
Query: 205 FGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQSSTKINFGTNGIV 264
F ++ DG++G+ G A + + S ++++ + + +
Sbjct: 116 F---------MLAQFDGVLGM-GFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPHL 165
Query: 265 SGSGVVSTPLLAKNPKTF--------------YSLTLDAISVGDQRLGVISGSNPGGDIV 310
G VV L +P+ + + +T+ +SVG L G ++V
Sbjct: 166 LGGEVV---LGGSDPQHYQGDFHYVSLSKTDSWQITMKGVSVGSSTLLC----EEGCEVV 218
Query: 311 IDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVK 370
+D+G++ P S L +M ++ A + + ++ S S P P+++ +
Sbjct: 219 VDTGSSFISAP---TSSLKLIMQALGAKE--KRLHEYVVSCSQVPTLPDISFNLGGRAYT 273
Query: 371 LSTSNVFMNI--SEDLVCSVFNARDDIP 396
LS+++ + D +C+V DIP
Sbjct: 274 LSSTDYVLQYPNRRDKLCTVALHAMDIP 301
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 114/285 (40%), Gaps = 53/285 (18%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
EY I IGTP + V DTGS +W C C + F+P+
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNR--FNPE----------- 59
Query: 150 XXQCAPPIKDSCSAEGNCR-YSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
DS + + S++YG S + G L +TV VG ++ +FG
Sbjct: 60 ---------DSSTYQSTSETVSITYGTGSMT-GILGYDTVQVG-----GISDTNQIFGLS 104
Query: 209 TKNGGKF--NSKTDGIVGLG-------GGDASLISQMKTTIAGK--FSYCLV--QQSSTK 255
G F + DGI+GL G + + + FS L QS +
Sbjct: 105 ETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQSGSV 164
Query: 256 INFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGT 315
+ FG GI S S + + ++ +T+D+I++ + + G ++D+GT
Sbjct: 165 VIFG--GIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAIACAEGCQA----IVDTGT 218
Query: 316 TLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEV 360
+L P S + ++ S + A++ +G D+ S S+ P++
Sbjct: 219 SLLTGP---TSPIANIQSDIGASENSDG--DMVVSCSAISSLPDI 258
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 114/285 (40%), Gaps = 53/285 (18%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
EY I IGTP + V DTGS +W C C + F+P+
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNR--FNPE----------- 59
Query: 150 XXQCAPPIKDSCSAEGNCR-YSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG 208
DS + + S++YG S + G L +TV VG ++ +FG
Sbjct: 60 ---------DSSTYQSTSETVSITYGTGSMT-GILGYDTVQVG-----GISDTNQIFGLS 104
Query: 209 TKNGGKF--NSKTDGIVGLG-------GGDASLISQMKTTIAGK--FSYCLV--QQSSTK 255
G F + DGI+GL G + + + FS L QS +
Sbjct: 105 ETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQSGSV 164
Query: 256 INFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGT 315
+ FG GI S S + + ++ +T+D+I++ + + G ++D+GT
Sbjct: 165 VIFG--GIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAIACAEGCQA----IVDTGT 218
Query: 316 TLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEV 360
+L P S + ++ S + A++ +G D+ S S+ P++
Sbjct: 219 SLLTGP---TSPIANIQSDIGASENSDG--DMVVSCSAISSLPDI 258
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 35/143 (24%)
Query: 87 NVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXX 146
N EYL +++G + + DTGS +W P S+ D L+ P
Sbjct: 12 NDEEYLTPVTVGKSTLHL--DFDTGSADLWVFSDELPSSEQTGHD--LYTPSS------- 60
Query: 147 XXXXXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVG--STSGQAVALPEIV 204
S + + +SYGD S ++GD+ +TVTVG +T+ QAV
Sbjct: 61 -------------SATKLSGYSWDISYGDGSSASGDVYRDTVTVGGVTTNKQAVE----- 102
Query: 205 FGCGTKNGGKF--NSKTDGIVGL 225
+K +F ++ DG++GL
Sbjct: 103 --AASKISSEFVQDTANDGLLGL 123
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 41/137 (29%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y++ + +G+P + DTGS W + Y
Sbjct: 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGAD-----KSY--------------------- 46
Query: 150 XXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGT 209
+K S S+ + + SV+YG SFS G T+TVT+GS + +P+ G +
Sbjct: 47 -------VKTSTSSATSDKVSVTYGSGSFS-GTEYTDTVTLGS-----LTIPKQSIGVAS 93
Query: 210 KNGGKFNSKTDGIVGLG 226
++ G F+ DGI+G+G
Sbjct: 94 RDSG-FDG-VDGILGVG 108
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQ 126
EY I +SIGTP + L + DTGS W + C S+
Sbjct: 19 EYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSE 55
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQC 127
Y I IGTPP + + DTGS ++W C S+
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKA 51
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 48/142 (33%), Gaps = 34/142 (23%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y I IGTPP V DTGS +W C + LFD
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDA------------ 66
Query: 150 XXQCAPPIKDSCSAEGN-----CRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIV 204
DS S + N RYS S + +TV G+ +P +
Sbjct: 67 --------SDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALP 118
Query: 205 FGCGTKNGGKFNSKTDGIVGLG 226
F ++ DG+VG+G
Sbjct: 119 FML---------AEFDGVVGMG 131
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 48/142 (33%), Gaps = 34/142 (23%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y I IGTPP V DTGS +W C + LFD
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDAS----------- 67
Query: 150 XXQCAPPIKDSCSAEGN-----CRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIV 204
DS S + N RYS S + +TV G+ +P +
Sbjct: 68 ---------DSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALP 118
Query: 205 FGCGTKNGGKFNSKTDGIVGLG 226
F ++ DG+VG+G
Sbjct: 119 F---------MLAEFDGVVGMG 131
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 48/142 (33%), Gaps = 34/142 (23%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y I IGTPP V DTGS +W C + LFD
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDA------------ 66
Query: 150 XXQCAPPIKDSCSAEGN-----CRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIV 204
DS S + N RYS S + +TV G+ +P +
Sbjct: 67 --------SDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALP 118
Query: 205 FGCGTKNGGKFNSKTDGIVGLG 226
F ++ DG+VG+G
Sbjct: 119 F---------MLAEFDGVVGMG 131
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 48/142 (33%), Gaps = 34/142 (23%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y I IGTPP V DTGS +W C + LFD
Sbjct: 62 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDAS----------- 110
Query: 150 XXQCAPPIKDSCSAEGN-----CRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIV 204
DS S + N RYS S + +TV G+ +P +
Sbjct: 111 ---------DSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALP 161
Query: 205 FGCGTKNGGKFNSKTDGIVGLG 226
F ++ DG+VG+G
Sbjct: 162 FML---------AEFDGVVGMG 174
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 48/142 (33%), Gaps = 34/142 (23%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y I IGTPP V DTGS +W C + LFD
Sbjct: 12 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDA------------ 59
Query: 150 XXQCAPPIKDSCSAEGN-----CRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIV 204
DS S + N RYS S + +TV G+ +P +
Sbjct: 60 --------SDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALP 111
Query: 205 FGCGTKNGGKFNSKTDGIVGLG 226
F ++ DG+VG+G
Sbjct: 112 F---------MLAEFDGVVGMG 124
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 48/142 (33%), Gaps = 34/142 (23%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y I IGTPP V DTGS +W C + LFD
Sbjct: 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDA------------ 66
Query: 150 XXQCAPPIKDSCSAEGN-----CRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIV 204
DS S + N RYS S + +TV G+ +P +
Sbjct: 67 --------SDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALP 118
Query: 205 FGCGTKNGGKFNSKTDGIVGLG 226
F ++ DG+VG+G
Sbjct: 119 F---------MLAEFDGVVGMG 131
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 48/142 (33%), Gaps = 34/142 (23%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y I IGTPP V DTGS +W C + LFD
Sbjct: 16 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDA------------ 63
Query: 150 XXQCAPPIKDSCSAEGN-----CRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIV 204
DS S + N RYS S + +TV G+ +P +
Sbjct: 64 --------SDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALP 115
Query: 205 FGCGTKNGGKFNSKTDGIVGLG 226
F ++ DG+VG+G
Sbjct: 116 F---------MLAEFDGVVGMG 128
>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase
pdb|1IZE|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase Complexed With Pepstatin
Length = 323
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 31/141 (21%)
Query: 87 NVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXX 146
N EY+ ++++G + + DTGS +W P S+ D + P
Sbjct: 13 NDEEYITQVTVGDDTLGLDF--DTGSADLWVFSSQTPSSERSGHD--YYTP--------- 59
Query: 147 XXXXXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTS--GQAVALPEIV 204
A I +S+SYGD S ++GD+ + VTVG S QAV E V
Sbjct: 60 ----GSSAQKID-------GATWSISYGDGSSASGDVYKDKVTVGGVSYDSQAVESAEKV 108
Query: 205 FGCGTKNGGKFNSKTDGIVGL 225
T+ ++ DG++GL
Sbjct: 109 SSEFTQ-----DTANDGLLGL 124
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 48/142 (33%), Gaps = 34/142 (23%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRXXXXXXXXXX 149
+Y I IGTPP V DTGS +W C + LFD
Sbjct: 15 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDA------------ 62
Query: 150 XXQCAPPIKDSCSAEGN-----CRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIV 204
DS S + N RYS S + +TV G+ +P +
Sbjct: 63 --------SDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALP 114
Query: 205 FGCGTKNGGKFNSKTDGIVGLG 226
F ++ DG+VG+G
Sbjct: 115 F---------MLAEFDGVVGMG 127
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 280 KTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLP-PAYASKLLSVMSSMIAA 338
+ +Y + + + +G Q L + ++DSGTTL LP + + + +V + +
Sbjct: 194 EWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIP 253
Query: 339 QPVEGPYD----LCYSISSRPR--FPEVTIHFRDAD 368
+ +G + C++ S P FP+++I+ RD +
Sbjct: 254 EFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDEN 289
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQ-CYKQDNPLFDP 137
EY I +SIGTP + + DTGS W + C S+ C + FDP
Sbjct: 19 EYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGK--RFFDP 65
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCY 128
+Y I +GTPP + + DTGS +W P ++CY
Sbjct: 53 QYFGEIGVGTPPQKFTVIFDTGSSNLWV-----PSAKCY 86
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 102/272 (37%), Gaps = 66/272 (24%)
Query: 91 YLIRISIGTPPVEILAVADTGSDLIWT-----QCQPCPPSQC--YKQDNPLFDPQRXXXX 143
Y I+IG+ + + DTGS +W C P Q + + ++ P+
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADFCKGKGIYTPKSS--- 70
Query: 144 XXXXXXXXQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEI 203
+ S + + YGD S S G L +TV G S + +
Sbjct: 71 ----------------TTSQNLGTPFYIGYGDGSSSQGTLYKDTVGFGGAS-----ITKQ 109
Query: 204 VFGCGTKNGGKFNSKTDGIVGLG------GGDASLI--SQMKTTIAGKFSYCLVQQSSTK 255
VF TK S GI+G+G GD + + + K +Y L S
Sbjct: 110 VFADITKT-----SIPQGILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNSP-- 162
Query: 256 INFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVIS-------GSNPGG- 307
N T I+ G GV K YS +L A+ V R I+ G N G
Sbjct: 163 -NAATGQIIFG-GV---------DKAKYSGSLIAVPVTSDRELRITLNSLKAVGKNINGN 211
Query: 308 -DIVIDSGTTLTYLPPAYASKLLSVMSSMIAA 338
D+++DSGTT+TYL A ++ + + +
Sbjct: 212 IDVLLDSGTTITYLQQDVAQDIIDAFQAELKS 243
>pdb|3KR9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase
pdb|3KU1|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|D Chain D, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|E Chain E, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|F Chain F, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|G Chain G, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|H Chain H, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
Length = 225
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 295 QRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPY 345
+RL +++ G I++D G+ YLP + + S IA + VEGPY
Sbjct: 4 KRLELVASFVSQGAILLDVGSDHAYLPIELVER--GQIKSAIAGEVVEGPY 52
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 306 GGDIVIDSGTTLTYLPPAYASKL 328
G ++DSGTTLTY P +A++L
Sbjct: 214 GDGALLDSGTTLTYFPSDFAAQL 236
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQC 127
EY+ +SIGTP + DTGS +W P S
Sbjct: 16 EYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSA 53
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPC 122
+Y I IGTPP V DTGS +W C
Sbjct: 14 QYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHC 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,007,361
Number of Sequences: 62578
Number of extensions: 476269
Number of successful extensions: 1184
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 69
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)