Query 040562
Match_columns 427
No_of_seqs 273 out of 1745
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:37:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.9E-75 4.1E-80 578.8 45.4 410 14-427 10-431 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 2.2E-59 4.7E-64 466.1 35.9 306 79-426 109-450 (482)
3 cd05478 pepsin_A Pepsin A, asp 100.0 2.3E-57 5E-62 435.9 30.5 297 83-421 3-317 (317)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 5.5E-57 1.2E-61 434.9 31.3 296 86-421 2-325 (325)
5 KOG1339 Aspartyl protease [Pos 100.0 1.1E-56 2.4E-61 442.6 34.0 335 82-425 38-397 (398)
6 cd05486 Cathespin_E Cathepsin 100.0 9.2E-57 2E-61 431.5 28.5 289 91-421 1-316 (316)
7 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.7E-56 5.9E-61 429.7 31.5 298 89-425 2-326 (326)
8 cd06098 phytepsin Phytepsin, a 100.0 6.5E-56 1.4E-60 425.4 30.9 287 83-421 3-317 (317)
9 cd05477 gastricsin Gastricsins 100.0 6.9E-56 1.5E-60 426.0 31.1 294 88-422 1-318 (318)
10 cd05487 renin_like Renin stimu 100.0 9.1E-56 2E-60 426.3 30.8 295 85-422 3-326 (326)
11 PTZ00147 plasmepsin-1; Provisi 100.0 4.9E-55 1.1E-59 431.8 34.2 299 79-423 128-450 (453)
12 cd05488 Proteinase_A_fungi Fun 100.0 1.8E-55 3.8E-60 423.2 30.1 295 83-421 3-320 (320)
13 cd05472 cnd41_like Chloroplast 100.0 5.2E-55 1.1E-59 416.4 32.9 285 90-424 1-299 (299)
14 cd05485 Cathepsin_D_like Cathe 100.0 5.7E-55 1.2E-59 420.8 30.1 298 82-421 3-329 (329)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.7E-54 3.6E-59 427.1 33.5 301 78-423 126-449 (450)
16 cd05473 beta_secretase_like Be 100.0 8.2E-53 1.8E-57 411.6 30.3 303 89-426 2-349 (364)
17 cd05489 xylanase_inhibitor_I_l 100.0 1.3E-51 2.9E-56 399.9 31.4 309 97-422 2-361 (362)
18 cd05475 nucellin_like Nucellin 100.0 1.2E-51 2.6E-56 387.6 28.7 258 89-424 1-273 (273)
19 cd06097 Aspergillopepsin_like 100.0 7.1E-51 1.5E-55 383.8 26.0 264 91-421 1-278 (278)
20 cd05476 pepsin_A_like_plant Ch 100.0 9.9E-50 2.1E-54 373.3 28.5 251 90-424 1-265 (265)
21 PF00026 Asp: Eukaryotic aspar 100.0 1.1E-49 2.4E-54 383.4 22.3 292 90-422 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 5.2E-48 1.1E-52 367.9 27.9 267 90-422 2-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 7.8E-45 1.7E-49 343.8 28.6 265 91-421 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1E-30 2.2E-35 225.7 13.5 158 91-260 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 1.1E-24 2.4E-29 187.9 14.3 140 282-421 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 4.8E-24 1E-28 171.9 12.3 106 93-225 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.2 4.9E-06 1.1E-10 64.6 7.5 93 90-227 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.0 0.0034 7.4E-08 51.0 7.8 95 87-226 8-102 (121)
29 PF13650 Asp_protease_2: Aspar 96.8 0.0093 2E-07 45.3 8.5 89 93-226 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.7 0.1 2.2E-06 42.6 9.1 91 88-226 14-106 (124)
31 PF11925 DUF3443: Protein of u 95.6 0.12 2.6E-06 49.4 10.3 109 90-228 23-149 (370)
32 cd05479 RP_DDI RP_DDI; retrope 95.0 0.094 2E-06 42.8 6.8 93 308-419 29-124 (124)
33 PF08284 RVP_2: Retroviral asp 92.5 0.16 3.5E-06 42.1 3.9 99 306-422 32-132 (135)
34 cd05484 retropepsin_like_LTR_2 92.1 0.19 4E-06 38.4 3.6 30 91-122 1-30 (91)
35 cd06095 RP_RTVL_H_like Retrope 89.7 2.1 4.5E-05 32.2 7.3 28 94-123 2-29 (86)
36 PF13975 gag-asp_proteas: gag- 89.7 0.63 1.4E-05 33.8 4.3 35 87-123 5-39 (72)
37 TIGR03698 clan_AA_DTGF clan AA 88.0 3.3 7.2E-05 32.7 7.7 24 394-417 84-107 (107)
38 TIGR02281 clan_AA_DTGA clan AA 86.2 1.5 3.3E-05 35.5 4.9 36 280-328 9-44 (121)
39 COG3577 Predicted aspartyl pro 84.9 4 8.7E-05 35.9 7.0 104 84-237 99-202 (215)
40 PF00077 RVP: Retroviral aspar 84.4 1.5 3.3E-05 33.9 4.0 29 92-122 7-35 (100)
41 PF02160 Peptidase_A3: Caulifl 82.6 1.9 4.2E-05 37.9 4.2 97 306-421 20-117 (201)
42 PF13650 Asp_protease_2: Aspar 78.1 3 6.5E-05 31.1 3.6 29 290-328 3-31 (90)
43 cd05482 HIV_retropepsin_like R 77.7 3.1 6.8E-05 31.4 3.5 25 94-120 2-26 (87)
44 cd05484 retropepsin_like_LTR_2 74.9 4.5 9.8E-05 30.6 3.8 30 289-328 4-33 (91)
45 PF12384 Peptidase_A2B: Ty3 tr 73.9 9.4 0.0002 32.4 5.5 23 306-328 45-67 (177)
46 PF13975 gag-asp_proteas: gag- 70.1 8.2 0.00018 27.8 4.0 29 290-328 13-41 (72)
47 cd05483 retropepsin_like_bacte 69.6 8.4 0.00018 28.9 4.3 29 290-328 7-35 (96)
48 cd06095 RP_RTVL_H_like Retrope 66.3 7.2 0.00016 29.2 3.2 29 290-328 3-31 (86)
49 COG3577 Predicted aspartyl pro 62.8 15 0.00032 32.4 4.8 36 280-328 103-138 (215)
50 PF12384 Peptidase_A2B: Ty3 tr 57.5 14 0.00031 31.3 3.6 30 91-120 33-62 (177)
51 COG5550 Predicted aspartyl pro 51.8 9.7 0.00021 30.6 1.7 20 309-328 29-49 (125)
52 cd05481 retropepsin_like_LTR_1 42.7 27 0.00059 26.6 2.9 24 306-329 10-33 (93)
53 PF00077 RVP: Retroviral aspar 40.0 26 0.00056 26.8 2.5 26 289-324 9-34 (100)
54 PF09668 Asp_protease: Asparty 39.5 52 0.0011 26.7 4.2 34 88-123 22-55 (124)
55 PF05984 Cytomega_UL20A: Cytom 38.5 40 0.00086 24.9 3.0 19 14-32 15-33 (100)
56 PF09668 Asp_protease: Asparty 38.5 40 0.00087 27.4 3.4 29 290-328 29-57 (124)
57 TIGR03698 clan_AA_DTGF clan AA 35.3 51 0.0011 25.9 3.5 27 93-119 2-33 (107)
58 PF08194 DIM: DIM protein; In 32.1 52 0.0011 20.3 2.3 19 1-20 1-19 (36)
59 cd01206 Homer Homer type EVH1 31.9 1.6E+02 0.0034 23.3 5.5 37 199-235 61-98 (111)
60 cd06094 RP_Saci_like RP_Saci_l 25.4 3.1E+02 0.0066 20.9 6.0 22 102-123 8-29 (89)
61 KOG0012 DNA damage inducible p 24.4 4.7E+02 0.01 25.4 8.3 38 385-422 307-346 (380)
62 cd05475 nucellin_like Nucellin 22.9 93 0.002 28.8 3.5 32 89-120 157-194 (273)
63 cd05476 pepsin_A_like_plant Ch 22.7 1.3E+02 0.0029 27.6 4.5 18 103-120 176-193 (265)
64 PF07172 GRP: Glycine rich pro 20.3 60 0.0013 25.0 1.3 12 1-13 1-12 (95)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.9e-75 Score=578.79 Aligned_cols=410 Identities=60% Similarity=1.004 Sum_probs=346.2
Q ss_pred HHHhhccccccCCCceEEEEeccCCCCCCCCCCCCChHHHHHHHHHhhHHhHhhhhcccCCCCCCcccceeecCCccEEE
Q 040562 14 LCLSVLSPAEAQTVGFSVELIHRDSPKSPFYNPNETPYQRLRNALNRSANRLRHFNKNSSVSSSKVSQADIIPNVGEYLI 93 (427)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 93 (427)
+.+..+....++..+++++|+||+++++|++.+.....++++++++|+.+|.+++.++... ...+..+...++++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~Y~v 87 (431)
T PLN03146 10 FSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDAS--PNDPQSDLISNGGEYLM 87 (431)
T ss_pred HHHhhhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcccc--CCccccCcccCCccEEE
Confidence 4455566666788899999999999999988777778899999999999999887543221 23344455667889999
Q ss_pred EEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCC-CCCCCCCCCCCceeeee
Q 040562 94 RISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAP-PIKDSCSAEGNCRYSVS 172 (427)
Q Consensus 94 ~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~-~~~~~c~~~~~~~~~~~ 172 (427)
+|.||||||++.|++||||+++||+|.+|. .|..+.++.|||++|+||+.++|.++.|+. .....|...+.|.|.+.
T Consensus 88 ~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~--~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~ 165 (431)
T PLN03146 88 NISIGTPPVPILAIADTGSDLIWTQCKPCD--DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYS 165 (431)
T ss_pred EEEcCCCCceEEEEECCCCCcceEcCCCCc--ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEE
Confidence 999999999999999999999999999998 898888999999999999999999999987 55446876677999999
Q ss_pred eCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCChhHHhhhhhccCceEEEeecCC
Q 040562 173 YGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLVQQS 252 (427)
Q Consensus 173 Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~~i~~~~Fs~~l~~~~ 252 (427)
|++|+.+.|.+++|+|+|++.....+.++++.|||++...+.|....+||||||++..++++|++....++|||||.+..
T Consensus 166 Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~ 245 (431)
T PLN03146 166 YGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLS 245 (431)
T ss_pred eCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCC
Confidence 99999878999999999998644445789999999998877664468999999999999999998665679999996521
Q ss_pred -----CceeeeCCCCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccC---CCCCcEEEccCCccccccHHH
Q 040562 253 -----STKINFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGS---NPGGDIVIDSGTTLTYLPPAY 324 (427)
Q Consensus 253 -----~G~l~fGg~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~---~~~~~~iiDSGt~~~~lp~~~ 324 (427)
.|.|+||+.+++.+.++.|+|++..+.+.+|.|+|++|+||++.+.++... .+..++||||||++++||+++
T Consensus 246 ~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~ 325 (431)
T PLN03146 246 SDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDF 325 (431)
T ss_pred CCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHH
Confidence 299999997667666689999996544679999999999999988764321 234689999999999999999
Q ss_pred HHHHHHHHHhhhccCCCc---CCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEEEEEeCCCcceechh
Q 040562 325 ASKLLSVMSSMIAAQPVE---GPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVFNARDDIPLYGNI 401 (427)
Q Consensus 325 ~~~i~~~l~~~~~~~~~~---~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~~i~~~~~~~ilG~~ 401 (427)
|++|.+++.+.+...... ..+++|+.......+|+|+|+|+|+++.|++++|+++..++..|+++.+..+.||||+.
T Consensus 326 y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~~~~~~~~~~~~~Cl~~~~~~~~~IlG~~ 405 (431)
T PLN03146 326 YSELESAVEEAIGGERVSDPQGLLSLCYSSTSDIKLPIITAHFTGADVKLQPLNTFVKVSEDLVCFAMIPTSSIAIFGNL 405 (431)
T ss_pred HHHHHHHHHHHhccccCCCCCCCCCccccCCCCCCCCeEEEEECCCeeecCcceeEEEcCCCcEEEEEecCCCceEECee
Confidence 999999998887532221 34678997643357899999999999999999999988777899998776667999999
Q ss_pred hhcceEEEEeCCCCEEEEeeCCCCCC
Q 040562 402 MQTNFLIGYDIEGRTVSFKPTDCSKQ 427 (427)
Q Consensus 402 fl~~~y~vfD~~~~riGfa~~~c~~~ 427 (427)
|||++|++||++++|||||+.+|+++
T Consensus 406 ~q~~~~vvyDl~~~~igFa~~~C~~~ 431 (431)
T PLN03146 406 AQMNFLVGYDLESKTVSFKPTDCTKM 431 (431)
T ss_pred eEeeEEEEEECCCCEEeeecCCcCcC
Confidence 99999999999999999999999874
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.2e-59 Score=466.08 Aligned_cols=306 Identities=22% Similarity=0.410 Sum_probs=255.1
Q ss_pred cccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCC
Q 040562 79 VSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIK 158 (427)
Q Consensus 79 ~~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~ 158 (427)
..+++.++.+.+|+++|+||||||+|.|+|||||+++||+|..|....| +.++.|||++|+||+.+.+..
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C--~~~~~yd~s~SSTy~~~~~~~-------- 178 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGC--APHRKFDPKKSSTYTKLKLGD-------- 178 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccc--cccCCCCccccCCcEecCCCC--------
Confidence 4566778899999999999999999999999999999999999985567 678999999999999843110
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh-----
Q 040562 159 DSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS----- 231 (427)
Q Consensus 159 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s----- 231 (427)
....+.+.|++|+.. |.+++|+|+|++. .++++.||++....+ .| ...+|||||||++..+
T Consensus 179 ------~~~~~~i~YGsGs~~-G~l~~DtV~ig~l-----~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~ 246 (482)
T PTZ00165 179 ------ESAETYIQYGTGECV-LALGKDTVKIGGL-----KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESK 246 (482)
T ss_pred ------ccceEEEEeCCCcEE-EEEEEEEEEECCE-----EEccEEEEEEEeccccccccccccceeecCCCcccccccC
Confidence 002678999999887 9999999999987 999999999998765 45 5678999999998652
Q ss_pred --------hHHhhhhhccCceEEEeecCCC--ceeeeCC-CCccc--CCCeeeeccccCCCCccEEEEeeEEEecceEee
Q 040562 232 --------LISQMKTTIAGKFSYCLVQQSS--TKINFGT-NGIVS--GSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLG 298 (427)
Q Consensus 232 --------l~~ql~~i~~~~Fs~~l~~~~~--G~l~fGg-~~~~~--g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~ 298 (427)
+.+| +.+.+++||+||.+... |+|+||| +.++. +..+.|+|+.. ..+|.|++++|+|+++.+.
T Consensus 247 ~~~p~~~~l~~q-gli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~---~~yW~i~l~~i~vgg~~~~ 322 (482)
T PTZ00165 247 KALPIVDNIKKQ-NLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIS---TDYWEIEVVDILIDGKSLG 322 (482)
T ss_pred CCCCHHHHHHHc-CCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccc---cceEEEEeCeEEECCEEee
Confidence 3344 56789999999986533 9999999 55554 44599999986 7899999999999998776
Q ss_pred eeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCc-----EEEecC
Q 040562 299 VISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDA-----DVKLST 373 (427)
Q Consensus 299 ~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~-----~~~l~~ 373 (427)
.+ .....+|+||||+++++|++++++|.+++... .+|+... .+|+|+|+|+|. +|.|+|
T Consensus 323 ~~---~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~----------~~C~~~~---~lP~itf~f~g~~g~~v~~~l~p 386 (482)
T PTZ00165 323 FC---DRKCKAAIDTGSSLITGPSSVINPLLEKIPLE----------EDCSNKD---SLPRISFVLEDVNGRKIKFDMDP 386 (482)
T ss_pred ec---CCceEEEEcCCCccEeCCHHHHHHHHHHcCCc----------ccccccc---cCCceEEEECCCCCceEEEEEch
Confidence 53 23678999999999999999999999887532 3598653 689999999864 899999
Q ss_pred CceEEEe----CCCeEEEE-EEeCC------CcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 374 SNVFMNI----SEDLVCSV-FNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 374 ~~y~~~~----~~~~~C~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
++|+++. ..+..|+. |++.+ +.||||++|||++|+|||.+|+|||||+++|+.
T Consensus 387 ~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~ 450 (482)
T PTZ00165 387 EDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQ 450 (482)
T ss_pred HHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCC
Confidence 9999974 23468975 77532 579999999999999999999999999999863
No 3
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2.3e-57 Score=435.87 Aligned_cols=297 Identities=26% Similarity=0.438 Sum_probs=252.3
Q ss_pred eeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCC
Q 040562 83 DIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCS 162 (427)
Q Consensus 83 ~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~ 162 (427)
+.+..+.+|+++|.||||+|++.|+|||||+++||+|..|....| +.++.|||++|+|++...
T Consensus 3 l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c--~~~~~f~~~~Sst~~~~~--------------- 65 (317)
T cd05478 3 LTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQAC--SNHNRFNPRQSSTYQSTG--------------- 65 (317)
T ss_pred cccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccc--cccCcCCCCCCcceeeCC---------------
Confidence 445668999999999999999999999999999999999984456 578999999999999865
Q ss_pred CCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh------hHH
Q 040562 163 AEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS------LIS 234 (427)
Q Consensus 163 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s------l~~ 234 (427)
+.|.+.|++|+. .|.+++|+|+|++. .++++.|||+....+.+ ....+||||||++..+ ++.
T Consensus 66 ----~~~~~~yg~gs~-~G~~~~D~v~ig~~-----~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 135 (317)
T cd05478 66 ----QPLSIQYGTGSM-TGILGYDTVQVGGI-----SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFD 135 (317)
T ss_pred ----cEEEEEECCceE-EEEEeeeEEEECCE-----EECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHH
Confidence 799999999985 59999999999987 89999999998876644 3458999999987543 444
Q ss_pred hh---hhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCC
Q 040562 235 QM---KTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGG 307 (427)
Q Consensus 235 ql---~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 307 (427)
|| +.|.+++||+||.+... |+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.+.. ..+.
T Consensus 136 ~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~-l~~~p~~~---~~~w~v~l~~v~v~g~~~~~----~~~~ 207 (317)
T cd05478 136 NMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGS-LNWVPVTA---ETYWQITVDSVTINGQVVAC----SGGC 207 (317)
T ss_pred HHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCc-eEEEECCC---CcEEEEEeeEEEECCEEEcc----CCCC
Confidence 43 56778999999998653 9999999 4567776 99999975 68999999999999998765 3367
Q ss_pred cEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEE
Q 040562 308 DIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCS 387 (427)
Q Consensus 308 ~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~ 387 (427)
.++|||||+++++|++++++|++++...... ...+..+|+... .+|+|+|+|+|+++.||+++|+.+. +..|+
T Consensus 208 ~~iiDTGts~~~lp~~~~~~l~~~~~~~~~~--~~~~~~~C~~~~---~~P~~~f~f~g~~~~i~~~~y~~~~--~~~C~ 280 (317)
T cd05478 208 QAIVDTGTSLLVGPSSDIANIQSDIGASQNQ--NGEMVVNCSSIS---SMPDVVFTINGVQYPLPPSAYILQD--QGSCT 280 (317)
T ss_pred EEEECCCchhhhCCHHHHHHHHHHhCCcccc--CCcEEeCCcCcc---cCCcEEEEECCEEEEECHHHheecC--CCEEe
Confidence 8999999999999999999999998654321 113556798653 6899999999999999999999875 46898
Q ss_pred E-EEeCC--CcceechhhhcceEEEEeCCCCEEEEee
Q 040562 388 V-FNARD--DIPLYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 388 ~-i~~~~--~~~ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
+ |+..+ +.||||++|||++|+|||++++|||||+
T Consensus 281 ~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 281 SGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred EEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 7 87754 6799999999999999999999999996
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=5.5e-57 Score=434.89 Aligned_cols=296 Identities=22% Similarity=0.406 Sum_probs=245.7
Q ss_pred cCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCC
Q 040562 86 PNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPP--SQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSA 163 (427)
Q Consensus 86 ~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~--~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~ 163 (427)
+.+.+|+++|.||||+|+|.|+|||||+++||+|..|.. ..| ..++.|||++|+|++...
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C--~~~~~y~~~~SsT~~~~~---------------- 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIAC--WLHHKYNSSKSSTYVKNG---------------- 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccc--cCcCcCCcccCcceeeCC----------------
Confidence 458899999999999999999999999999999999972 256 467899999999998743
Q ss_pred CCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh------hHHh
Q 040562 164 EGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------LISQ 235 (427)
Q Consensus 164 ~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------l~~q 235 (427)
+.|.+.|++|+. .|.+++|+|+|++. .++++.||+++...+ .| ....+||||||++..+ ++++
T Consensus 64 ---~~~~i~Yg~G~~-~G~~~~D~v~~g~~-----~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 134 (325)
T cd05490 64 ---TEFAIQYGSGSL-SGYLSQDTVSIGGL-----QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDN 134 (325)
T ss_pred ---cEEEEEECCcEE-EEEEeeeEEEECCE-----EEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHH
Confidence 899999999986 59999999999987 899999999988765 34 4568999999997654 2333
Q ss_pred h---hhhccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCC
Q 040562 236 M---KTTIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPG 306 (427)
Q Consensus 236 l---~~i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 306 (427)
| +.+.+++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. ..+|.|++++|+|+++.... ...
T Consensus 135 l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~-l~~~~~~~---~~~w~v~l~~i~vg~~~~~~----~~~ 206 (325)
T cd05490 135 IMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGD-LHYVNVTR---KAYWQIHMDQVDVGSGLTLC----KGG 206 (325)
T ss_pred HHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCc-eEEEEcCc---ceEEEEEeeEEEECCeeeec----CCC
Confidence 3 5578899999998642 29999999 4556666 99999975 67999999999998874332 235
Q ss_pred CcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC--Ce
Q 040562 307 GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE--DL 384 (427)
Q Consensus 307 ~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~--~~ 384 (427)
..+||||||+++++|++++++|.+++.+.. ... ..+..+|+... .+|+|+|+|+|++++|+|++|+++... ..
T Consensus 207 ~~aiiDSGTt~~~~p~~~~~~l~~~~~~~~-~~~-~~~~~~C~~~~---~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~ 281 (325)
T cd05490 207 CEAIVDTGTSLITGPVEEVRALQKAIGAVP-LIQ-GEYMIDCEKIP---TLPVISFSLGGKVYPLTGEDYILKVSQRGTT 281 (325)
T ss_pred CEEEECCCCccccCCHHHHHHHHHHhCCcc-ccC-CCEEecccccc---cCCCEEEEECCEEEEEChHHeEEeccCCCCC
Confidence 789999999999999999999999986531 111 14567898653 689999999999999999999987543 35
Q ss_pred EEEE-EEeC------CCcceechhhhcceEEEEeCCCCEEEEee
Q 040562 385 VCSV-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 385 ~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
.|++ |+.. +..||||++|||++|+|||++++|||||+
T Consensus 282 ~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 282 ICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 7986 7642 25799999999999999999999999996
No 5
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-56 Score=442.60 Aligned_cols=335 Identities=42% Similarity=0.762 Sum_probs=276.4
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCC-CCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAP-PIKDS 160 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~-~~~~~ 160 (427)
......+++|+++|+||||||+|.|++||||+++||+|.+|.. .|..+.++.|||++|+||+.+.|.+..|.. .. .
T Consensus 38 ~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~-~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~--~ 114 (398)
T KOG1339|consen 38 SLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS-ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ--S 114 (398)
T ss_pred ccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc-cccccCCCccCccccccccccCCCCcccccccc--C
Confidence 3445577899999999999999999999999999999999973 587655666999999999999999999998 44 3
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC-C-CCCceEeecCCCCChhHHhhhh
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF-N-SKTDGIVGLGGGDASLISQMKT 238 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~-~~~~GilGLg~~~~sl~~ql~~ 238 (427)
|...+.|.|.+.|++|+.++|++++|+|+|++.+ .+.++++.|||+....+.+ . ..++||||||++.+++.+|+..
T Consensus 115 ~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~--~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~ 192 (398)
T KOG1339|consen 115 CSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT--SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPS 192 (398)
T ss_pred cccCCcCceEEEeCCCCceeEEEEEEEEEEcccc--ccccccEEEEeeecCccccccccccceEeecCCCCccceeeccc
Confidence 7777889999999998777799999999999832 1278889999999997643 2 5689999999999999999876
Q ss_pred hcc--CceEEEeecCC-----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccC--CCCC
Q 040562 239 TIA--GKFSYCLVQQS-----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGS--NPGG 307 (427)
Q Consensus 239 i~~--~~Fs~~l~~~~-----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~--~~~~ 307 (427)
... ++||+||.+.. .|.|+||+ ..++.+. +.|+|++.... .+|.|++.+|+|+++. ...... ....
T Consensus 193 ~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~-l~~tPl~~~~~-~~y~v~l~~I~vgg~~-~~~~~~~~~~~~ 269 (398)
T KOG1339|consen 193 FYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGS-LTYTPLLSNPS-TYYQVNLDGISVGGKR-PIGSSLFCTDGG 269 (398)
T ss_pred ccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCc-eEEEeeccCCC-ccEEEEEeEEEECCcc-CCCcceEecCCC
Confidence 533 35999999874 39999999 4445554 99999998643 5999999999999865 222111 2258
Q ss_pred cEEEccCCccccccHHHHHHHHHHHHhhh--ccCCCcCCCcceeccCCC-CccCeEEEEEe-CcEEEecCCceEEEeCCC
Q 040562 308 DIVIDSGTTLTYLPPAYASKLLSVMSSMI--AAQPVEGPYDLCYSISSR-PRFPEVTIHFR-DADVKLSTSNVFMNISED 383 (427)
Q Consensus 308 ~~iiDSGt~~~~lp~~~~~~i~~~l~~~~--~~~~~~~~~~~C~~~~~~-~~~P~i~~~f~-g~~~~l~~~~y~~~~~~~ 383 (427)
++|+||||++++||+++|++|.+++.+.+ ..... .+.+.|+..... ..+|+|+|+|+ |+.|.+++++|+++..++
T Consensus 270 ~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~~~~~~-~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~ 348 (398)
T KOG1339|consen 270 GAIIDSGTSLTYLPTSAYNALREAIGAEVSVVGTDG-EYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKNYLVEVSDG 348 (398)
T ss_pred CEEEECCcceeeccHHHHHHHHHHHHhheeccccCC-ceeeecccCCCCcccCCcEEEEECCCcEEEeCccceEEEECCC
Confidence 99999999999999999999999999864 22111 456789977421 13899999999 799999999999998765
Q ss_pred eE-EEEEE-eCC--CcceechhhhcceEEEEeCC-CCEEEEee--CCCC
Q 040562 384 LV-CSVFN-ARD--DIPLYGNIMQTNFLIGYDIE-GRTVSFKP--TDCS 425 (427)
Q Consensus 384 ~~-C~~i~-~~~--~~~ilG~~fl~~~y~vfD~~-~~riGfa~--~~c~ 425 (427)
.. |+++. ..+ ..||||+.|||+++++||.. ++|||||+ ..|+
T Consensus 349 ~~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 349 GGVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CCceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 44 99944 433 38999999999999999999 99999999 7786
No 6
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=9.2e-57 Score=431.52 Aligned_cols=289 Identities=26% Similarity=0.434 Sum_probs=243.7
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCceee
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYS 170 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~ 170 (427)
|+++|+||||||+++|+|||||+++||+|..|....| ..++.|||++|+|++... +.|+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C--~~~~~y~~~~SsT~~~~~-------------------~~~~ 59 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQAC--TKHNRFQPSESSTYVSNG-------------------EAFS 59 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCccc--CccceECCCCCcccccCC-------------------cEEE
Confidence 8999999999999999999999999999999985567 567899999999998865 8999
Q ss_pred eeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh----------hHHhhhh
Q 040562 171 VSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS----------LISQMKT 238 (427)
Q Consensus 171 ~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s----------l~~ql~~ 238 (427)
+.|++|+. .|.+++|+|+|++. .++++.||++....+ .| ....+||||||++..+ +.+| +.
T Consensus 60 i~Yg~g~~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~q-g~ 132 (316)
T cd05486 60 IQYGTGSL-TGIIGIDQVTVEGI-----TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQ-NL 132 (316)
T ss_pred EEeCCcEE-EEEeeecEEEECCE-----EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhc-CC
Confidence 99999986 59999999999987 899999999887665 34 4578999999997654 2344 55
Q ss_pred hccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcEEEc
Q 040562 239 TIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVID 312 (427)
Q Consensus 239 i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiD 312 (427)
+..++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. .++|.|++++|+|+++.+.. .....++||
T Consensus 133 i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~-l~~~pi~~---~~~w~v~l~~i~v~g~~~~~----~~~~~aiiD 204 (316)
T cd05486 133 VELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQ-LNWVPVTV---QGYWQIQLDNIQVGGTVIFC----SDGCQAIVD 204 (316)
T ss_pred CCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccc-eEEEECCC---ceEEEEEeeEEEEecceEec----CCCCEEEEC
Confidence 67899999998642 29999999 4567776 99999986 78999999999999987654 235789999
Q ss_pred cCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEe--CCCeEEEE-E
Q 040562 313 SGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNI--SEDLVCSV-F 389 (427)
Q Consensus 313 SGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~--~~~~~C~~-i 389 (427)
|||+++++|++++++|.+++..... ...+..+|+... .+|+|+|+|+|++++|++++|++.. ..+..|++ |
T Consensus 205 TGTs~~~lP~~~~~~l~~~~~~~~~---~~~~~~~C~~~~---~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~ 278 (316)
T cd05486 205 TGTSLITGPSGDIKQLQNYIGATAT---DGEYGVDCSTLS---LMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGF 278 (316)
T ss_pred CCcchhhcCHHHHHHHHHHhCCccc---CCcEEEeccccc---cCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEE
Confidence 9999999999999999888754311 113556898543 6899999999999999999999875 23468986 7
Q ss_pred EeCC------CcceechhhhcceEEEEeCCCCEEEEee
Q 040562 390 NARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 390 ~~~~------~~~ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
+..+ +.||||++|||++|+|||++++|||||+
T Consensus 279 ~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 279 QGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 6532 4699999999999999999999999996
No 7
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.7e-56 Score=429.72 Aligned_cols=298 Identities=26% Similarity=0.463 Sum_probs=246.5
Q ss_pred ccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCce
Q 040562 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCR 168 (427)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (427)
++|+++|+||||+|++.|+|||||+++||+|..|. .|..+.++.|||++|+|++.+.|++..|.... .|. .+.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~--~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~--~~~-~~~~~ 76 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK--NCGIHMEPPYNLNNSITSSILYCDCNKCCYCL--SCL-NNKCE 76 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC--CcCCCCCCCcCcccccccccccCCCccccccC--cCC-CCcCc
Confidence 58999999999999999999999999999999998 88777789999999999999999999995421 343 35599
Q ss_pred eeeeeCCCCeEEEEEEEEEEEEcCCCCC--ceecCcEEEEeEeecCCCC-CCCCceEeecCCCCCh--------hHHhhh
Q 040562 169 YSVSYGDDSFSNGDLATETVTVGSTSGQ--AVALPEIVFGCGTKNGGKF-NSKTDGIVGLGGGDAS--------LISQMK 237 (427)
Q Consensus 169 ~~~~Y~~g~~~~G~~~~D~v~ig~~~~~--~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s--------l~~ql~ 237 (427)
|.+.|++|+.+.|.+++|+|+|++.... .....++.|||+....+.| ....+||||||+...+ +..| .
T Consensus 77 ~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~-~ 155 (326)
T cd06096 77 YSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTK-R 155 (326)
T ss_pred EEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHh-c
Confidence 9999999987779999999999976211 0012357899999887766 5678999999998643 2233 2
Q ss_pred hhc--cCceEEEeecCCCceeeeCC--CCcccC---------CCeeeeccccCCCCccEEEEeeEEEecceE--eeeecc
Q 040562 238 TTI--AGKFSYCLVQQSSTKINFGT--NGIVSG---------SGVVSTPLLAKNPKTFYSLTLDAISVGDQR--LGVISG 302 (427)
Q Consensus 238 ~i~--~~~Fs~~l~~~~~G~l~fGg--~~~~~g---------~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~--~~~~~~ 302 (427)
.+. .++||+||.+.. |+|+||| +.++.+ .++.|+|+.. ..+|.|++++|+|+++. ...
T Consensus 156 ~~~~~~~~FS~~l~~~~-G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~---~~~y~v~l~~i~vg~~~~~~~~--- 228 (326)
T cd06096 156 PKLKKDKIFSICLSEDG-GELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR---KYYYYVKLEGLSVYGTTSNSGN--- 228 (326)
T ss_pred ccccCCceEEEEEcCCC-eEEEECccChhhhcccccccccccCCceEEeccC---CceEEEEEEEEEEcccccceec---
Confidence 233 499999999754 9999999 344441 3499999986 57999999999999886 222
Q ss_pred CCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEe-CcEEEecCCceEEEeC
Q 040562 303 SNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFR-DADVKLSTSNVFMNIS 381 (427)
Q Consensus 303 ~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~-g~~~~l~~~~y~~~~~ 381 (427)
.....++|||||++++||++++++|.+++ |+|+|+|+ |++++++|++|++...
T Consensus 229 -~~~~~aivDSGTs~~~lp~~~~~~l~~~~-------------------------P~i~~~f~~g~~~~i~p~~y~~~~~ 282 (326)
T cd06096 229 -TKGLGMLVDSGSTLSHFPEDLYNKINNFF-------------------------PTITIIFENNLKIDWKPSSYLYKKE 282 (326)
T ss_pred -ccCCCEEEeCCCCcccCCHHHHHHHHhhc-------------------------CcEEEEEcCCcEEEECHHHhccccC
Confidence 34788999999999999999999997765 89999998 7999999999999876
Q ss_pred CCeEEEEEEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCC
Q 040562 382 EDLVCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCS 425 (427)
Q Consensus 382 ~~~~C~~i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~ 425 (427)
+...|+++...++.+|||++|||++|+|||++++|||||+++|.
T Consensus 283 ~~~c~~~~~~~~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 283 SFWCKGGEKSVSNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred CceEEEEEecCCCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 55555557666678999999999999999999999999999994
No 8
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=6.5e-56 Score=425.44 Aligned_cols=287 Identities=26% Similarity=0.435 Sum_probs=242.3
Q ss_pred eeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC-CCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCC
Q 040562 83 DIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCP-PSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSC 161 (427)
Q Consensus 83 ~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~-~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c 161 (427)
+.+..+.+|+++|+||||+|++.|+|||||+++||+|..|. ...| ..++.|||++|+|++...
T Consensus 3 l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C--~~~~~y~~~~SsT~~~~~-------------- 66 (317)
T cd06098 3 LKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIAC--YFHSKYKSSKSSTYKKNG-------------- 66 (317)
T ss_pred ccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccc--cccCcCCcccCCCcccCC--------------
Confidence 34667899999999999999999999999999999999996 3468 467899999999998864
Q ss_pred CCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh--------
Q 040562 162 SAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS-------- 231 (427)
Q Consensus 162 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s-------- 231 (427)
..+.+.|++|+.. |.+++|+|+|++. .++++.||++....+ .| ....+||||||++..+
T Consensus 67 -----~~~~i~Yg~G~~~-G~~~~D~v~ig~~-----~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~ 135 (317)
T cd06098 67 -----TSASIQYGTGSIS-GFFSQDSVTVGDL-----VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVW 135 (317)
T ss_pred -----CEEEEEcCCceEE-EEEEeeEEEECCE-----EECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHH
Confidence 7899999999865 9999999999987 899999999987755 34 5678999999997654
Q ss_pred --hHHhhhhhccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccC
Q 040562 232 --LISQMKTTIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGS 303 (427)
Q Consensus 232 --l~~ql~~i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 303 (427)
+.+| +.+.+++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. ..+|.|++++|+|+++.+...
T Consensus 136 ~~l~~q-g~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~pv~~---~~~w~v~l~~i~v~g~~~~~~--- 207 (317)
T cd06098 136 YNMVEQ-GLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGE-HTYVPVTR---KGYWQFEMGDVLIGGKSTGFC--- 207 (317)
T ss_pred HHHHhc-CCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccc-eEEEecCc---CcEEEEEeCeEEECCEEeeec---
Confidence 2344 5678899999998642 29999999 5667777 99999985 679999999999999887653
Q ss_pred CCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC-
Q 040562 304 NPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE- 382 (427)
Q Consensus 304 ~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~- 382 (427)
.....+||||||+++++|++++++|. +..+|+... .+|+|+|+|+|++++|++++|+++..+
T Consensus 208 ~~~~~aivDTGTs~~~lP~~~~~~i~--------------~~~~C~~~~---~~P~i~f~f~g~~~~l~~~~yi~~~~~~ 270 (317)
T cd06098 208 AGGCAAIADSGTSLLAGPTTIVTQIN--------------SAVDCNSLS---SMPNVSFTIGGKTFELTPEQYILKVGEG 270 (317)
T ss_pred CCCcEEEEecCCcceeCCHHHHHhhh--------------ccCCccccc---cCCcEEEEECCEEEEEChHHeEEeecCC
Confidence 23578999999999999999877663 235698653 689999999999999999999987543
Q ss_pred -CeEEEE-EEeCC------CcceechhhhcceEEEEeCCCCEEEEee
Q 040562 383 -DLVCSV-FNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 383 -~~~C~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
...|++ |+..+ ..||||++|||++|+|||++++|||||+
T Consensus 271 ~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 271 AAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 358986 76432 4799999999999999999999999995
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=6.9e-56 Score=425.98 Aligned_cols=294 Identities=26% Similarity=0.471 Sum_probs=248.2
Q ss_pred CccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCc
Q 040562 88 VGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNC 167 (427)
Q Consensus 88 ~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~ 167 (427)
|.+|+++|.||||||++.|++||||+++||+|..|....| ..++.|||++|+|++... |
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C--~~~~~f~~~~SsT~~~~~-------------------~ 59 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQAC--TNHTKFNPSQSSTYSTNG-------------------E 59 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccc--cccCCCCcccCCCceECC-------------------c
Confidence 4689999999999999999999999999999999986667 567899999999999865 8
Q ss_pred eeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCC-C-CCCCceEeecCCCCC------hhHHhh---
Q 040562 168 RYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGK-F-NSKTDGIVGLGGGDA------SLISQM--- 236 (427)
Q Consensus 168 ~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~------sl~~ql--- 236 (427)
.|++.|++|+. .|.+++|+|+|++. .++++.|||+....+. + ....+||||||++.. +++.||
T Consensus 60 ~~~~~Yg~Gs~-~G~~~~D~i~~g~~-----~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~ 133 (318)
T cd05477 60 TFSLQYGSGSL-TGIFGYDTVTVQGI-----IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQ 133 (318)
T ss_pred EEEEEECCcEE-EEEEEeeEEEECCE-----EEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhc
Confidence 99999999986 49999999999987 8999999999987652 3 456799999998643 355554
Q ss_pred hhhccCceEEEeecCC---CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcEEE
Q 040562 237 KTTIAGKFSYCLVQQS---STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVI 311 (427)
Q Consensus 237 ~~i~~~~Fs~~l~~~~---~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ii 311 (427)
+.|.+++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. ..+|.|++++|+|+++.+... ..+..+||
T Consensus 134 g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~-l~~~pv~~---~~~w~v~l~~i~v~g~~~~~~---~~~~~~ii 206 (318)
T cd05477 134 NLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQ-IYWTPVTS---ETYWQIGIQGFQINGQATGWC---SQGCQAIV 206 (318)
T ss_pred CCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCc-eEEEecCC---ceEEEEEeeEEEECCEEeccc---CCCceeeE
Confidence 4577899999998752 29999999 4567666 99999976 679999999999999887543 23567999
Q ss_pred ccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEEE-EE
Q 040562 312 DSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSV-FN 390 (427)
Q Consensus 312 DSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~~-i~ 390 (427)
||||+++++|++++++|++.+....... ..+..+|+... .+|+|+|+|+|+++.|++++|+... ...|+. |+
T Consensus 207 DSGtt~~~lP~~~~~~l~~~~~~~~~~~--~~~~~~C~~~~---~~p~l~~~f~g~~~~v~~~~y~~~~--~~~C~~~i~ 279 (318)
T cd05477 207 DTGTSLLTAPQQVMSTLMQSIGAQQDQY--GQYVVNCNNIQ---NLPTLTFTINGVSFPLPPSAYILQN--NGYCTVGIE 279 (318)
T ss_pred CCCCccEECCHHHHHHHHHHhCCccccC--CCEEEeCCccc---cCCcEEEEECCEEEEECHHHeEecC--CCeEEEEEE
Confidence 9999999999999999999987653321 14567798653 6899999999999999999999875 457974 86
Q ss_pred eC------C-CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 391 AR------D-DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 391 ~~------~-~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
+. + ..||||++|||++|++||++++|||||++
T Consensus 280 ~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 280 PTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 43 1 46999999999999999999999999985
No 10
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=9.1e-56 Score=426.26 Aligned_cols=295 Identities=26% Similarity=0.450 Sum_probs=248.9
Q ss_pred ecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCC
Q 040562 85 IPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPP--SQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCS 162 (427)
Q Consensus 85 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~--~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~ 162 (427)
+..+.+|+++|+||||+|+++|++||||+++||++..|.. ..| ..++.|||++|+|++...
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c--~~~~~y~~~~SsT~~~~~--------------- 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTAC--VTHNLYDASDSSTYKENG--------------- 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhh--cccCcCCCCCCeeeeECC---------------
Confidence 4568899999999999999999999999999999998872 246 567899999999999865
Q ss_pred CCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh---------
Q 040562 163 AEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS--------- 231 (427)
Q Consensus 163 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s--------- 231 (427)
|.|++.|++|++ .|.+++|+|+|++. .+ ++.||++..... .+ ....+||||||++..+
T Consensus 66 ----~~~~~~Yg~g~~-~G~~~~D~v~~g~~-----~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 134 (326)
T cd05487 66 ----TEFTIHYASGTV-KGFLSQDIVTVGGI-----PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFD 134 (326)
T ss_pred ----EEEEEEeCCceE-EEEEeeeEEEECCE-----Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHH
Confidence 899999999985 59999999999986 55 478999987653 34 4568999999997654
Q ss_pred -hHHhhhhhccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCC
Q 040562 232 -LISQMKTTIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSN 304 (427)
Q Consensus 232 -l~~ql~~i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 304 (427)
|.+| +.+.+++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. ..+|.|++++++|+++.+.. .
T Consensus 135 ~L~~q-g~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~-l~~~~~~~---~~~w~v~l~~i~vg~~~~~~----~ 205 (326)
T cd05487 135 NIMSQ-GVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGD-FHYINTSK---TGFWQIQMKGVSVGSSTLLC----E 205 (326)
T ss_pred HHHhc-CCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCc-eEEEECCc---CceEEEEecEEEECCEEEec----C
Confidence 5666 7788999999998753 29999999 5567776 99999875 67999999999999987754 2
Q ss_pred CCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC--
Q 040562 305 PGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE-- 382 (427)
Q Consensus 305 ~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~-- 382 (427)
.+..++|||||+++++|++++++|++++.+... ...+..+|+... .+|+|+|+|+|.+++|++++|+++..+
T Consensus 206 ~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~---~~~y~~~C~~~~---~~P~i~f~fgg~~~~v~~~~yi~~~~~~~ 279 (326)
T cd05487 206 DGCTAVVDTGASFISGPTSSISKLMEALGAKER---LGDYVVKCNEVP---TLPDISFHLGGKEYTLSSSDYVLQDSDFS 279 (326)
T ss_pred CCCEEEECCCccchhCcHHHHHHHHHHhCCccc---CCCEEEeccccC---CCCCEEEEECCEEEEeCHHHhEEeccCCC
Confidence 357899999999999999999999999865432 124567898653 689999999999999999999998643
Q ss_pred CeEEEE-EEeCC------CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 383 DLVCSV-FNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 383 ~~~C~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
+..|+. |+..+ +.||||++|||++|+|||++++|||||++
T Consensus 280 ~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 280 DKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 568976 77531 47999999999999999999999999985
No 11
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=4.9e-55 Score=431.75 Aligned_cols=299 Identities=20% Similarity=0.347 Sum_probs=246.0
Q ss_pred cccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCC
Q 040562 79 VSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIK 158 (427)
Q Consensus 79 ~~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~ 158 (427)
...++.+..+.+|+++|+||||||++.|+|||||+++||+|..|....| +.++.|||++|+|++...
T Consensus 128 ~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C--~~~~~yd~s~SsT~~~~~----------- 194 (453)
T PTZ00147 128 DNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGC--ETKNLYDSSKSKTYEKDG----------- 194 (453)
T ss_pred CeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccc--cCCCccCCccCcceEECC-----------
Confidence 3445557788999999999999999999999999999999999985556 678899999999999865
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC---CC-CCCCceEeecCCCCCh---
Q 040562 159 DSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG---KF-NSKTDGIVGLGGGDAS--- 231 (427)
Q Consensus 159 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~---~~-~~~~~GilGLg~~~~s--- 231 (427)
+.|++.|++|++. |.+++|+|+||+. .++ ..|+++.+..+ .+ ....|||||||++..+
T Consensus 195 --------~~f~i~Yg~Gsvs-G~~~~DtVtiG~~-----~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~ 259 (453)
T PTZ00147 195 --------TKVEMNYVSGTVS-GFFSKDLVTIGNL-----SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGS 259 (453)
T ss_pred --------CEEEEEeCCCCEE-EEEEEEEEEECCE-----EEE-EEEEEEEeccCcccccccccccceecccCCcccccc
Confidence 8999999999865 9999999999986 777 57888876654 12 3578999999998654
Q ss_pred -------hHHhhhhhccCceEEEeecCC--CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeee
Q 040562 232 -------LISQMKTTIAGKFSYCLVQQS--STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVI 300 (427)
Q Consensus 232 -------l~~ql~~i~~~~Fs~~l~~~~--~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~ 300 (427)
|..| +.+.+++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. ..+|.|.++ +.+++...
T Consensus 260 ~~p~~~~L~~q-g~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~-l~y~pl~~---~~~W~V~l~-~~vg~~~~--- 330 (453)
T PTZ00147 260 VDPYVVELKNQ-NKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGP-LTYEKLNH---DLYWQVDLD-VHFGNVSS--- 330 (453)
T ss_pred CCCHHHHHHHc-CCCCccEEEEEecCCCCCCeEEEECCcChhhcCCc-eEEEEcCC---CceEEEEEE-EEECCEec---
Confidence 2334 5678899999998753 29999999 5567776 99999974 679999998 47766421
Q ss_pred ccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEe
Q 040562 301 SGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNI 380 (427)
Q Consensus 301 ~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~ 380 (427)
....+||||||+++++|++++++|.+++..... .....+..+|+. ..+|+|+|+|+|.+++|+|++|+.+.
T Consensus 331 ----~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~-~~~~~y~~~C~~----~~lP~~~f~f~g~~~~L~p~~yi~~~ 401 (453)
T PTZ00147 331 ----EKANVIVDSGTSVITVPTEFLNKFVESLDVFKV-PFLPLYVTTCNN----TKLPTLEFRSPNKVYTLEPEYYLQPI 401 (453)
T ss_pred ----CceeEEECCCCchhcCCHHHHHHHHHHhCCeec-CCCCeEEEeCCC----CCCCeEEEEECCEEEEECHHHheecc
Confidence 267899999999999999999999999865321 122245668985 26899999999999999999999764
Q ss_pred CC--CeEEEE-EEeCC---CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 381 SE--DLVCSV-FNARD---DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 381 ~~--~~~C~~-i~~~~---~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
.+ ...|++ |++.+ +.||||++|||++|+|||++++|||||+++
T Consensus 402 ~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 402 EDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred ccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 32 357986 87753 579999999999999999999999999987
No 12
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.8e-55 Score=423.18 Aligned_cols=295 Identities=24% Similarity=0.427 Sum_probs=247.9
Q ss_pred eeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCC
Q 040562 83 DIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCS 162 (427)
Q Consensus 83 ~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~ 162 (427)
+.++.+.+|+++|+||||+|++.|+|||||+++||+|..|....| ..++.|+|++|+|++...
T Consensus 3 l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C--~~~~~y~~~~Sst~~~~~--------------- 65 (320)
T cd05488 3 LTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIAC--FLHSKYDSSASSTYKANG--------------- 65 (320)
T ss_pred ccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCccc--CCcceECCCCCcceeeCC---------------
Confidence 345568899999999999999999999999999999999985568 467899999999998754
Q ss_pred CCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCC-C-CCCCceEeecCCCCChh--------
Q 040562 163 AEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGK-F-NSKTDGIVGLGGGDASL-------- 232 (427)
Q Consensus 163 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~sl-------- 232 (427)
|.+.+.|++|+. .|.+++|+|+|++. .++++.|||+....+. + ....+||||||++..+.
T Consensus 66 ----~~~~~~y~~g~~-~G~~~~D~v~ig~~-----~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 135 (320)
T cd05488 66 ----TEFKIQYGSGSL-EGFVSQDTLSIGDL-----TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFY 135 (320)
T ss_pred ----CEEEEEECCceE-EEEEEEeEEEECCE-----EECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHH
Confidence 899999999986 59999999999987 8999999999877653 3 35689999999987642
Q ss_pred --HHhhhhhccCceEEEeecCC--CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCC
Q 040562 233 --ISQMKTTIAGKFSYCLVQQS--STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPG 306 (427)
Q Consensus 233 --~~ql~~i~~~~Fs~~l~~~~--~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 306 (427)
.+| +.|.+++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. ..+|.|++++|+||++.+... .
T Consensus 136 ~l~~q-g~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~w~v~l~~i~vg~~~~~~~-----~ 205 (320)
T cd05488 136 NMINQ-GLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGK-ITWLPVRR---KAYWEVELEKIGLGDEELELE-----N 205 (320)
T ss_pred HHHhc-CCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCc-eEEEeCCc---CcEEEEEeCeEEECCEEeccC-----C
Confidence 234 6678899999999752 39999999 4566666 99999986 679999999999999877653 5
Q ss_pred CcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEE
Q 040562 307 GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVC 386 (427)
Q Consensus 307 ~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C 386 (427)
..++|||||+++++|++++++|.+++.+.... ...+..+|+... .+|+|+|+|+|+++.|++++|+++. +..|
T Consensus 206 ~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~~--~~~~~~~C~~~~---~~P~i~f~f~g~~~~i~~~~y~~~~--~g~C 278 (320)
T cd05488 206 TGAAIDTGTSLIALPSDLAEMLNAEIGAKKSW--NGQYTVDCSKVD---SLPDLTFNFDGYNFTLGPFDYTLEV--SGSC 278 (320)
T ss_pred CeEEEcCCcccccCCHHHHHHHHHHhCCcccc--CCcEEeeccccc---cCCCEEEEECCEEEEECHHHheecC--CCeE
Confidence 68999999999999999999999988644221 113556798653 6899999999999999999999864 3479
Q ss_pred EE-EEeCC------CcceechhhhcceEEEEeCCCCEEEEee
Q 040562 387 SV-FNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 387 ~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
++ +...+ ..||||++|||++|+|||++++|||||+
T Consensus 279 ~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 279 ISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred EEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 87 66431 4699999999999999999999999996
No 13
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=5.2e-55 Score=416.44 Aligned_cols=285 Identities=41% Similarity=0.785 Sum_probs=236.7
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCcee
Q 040562 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRY 169 (427)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (427)
+|+++|.||||||++.|+|||||+++||+|.+ | |.|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~-----c---------------------------------------~~~ 36 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQP-----C---------------------------------------CLY 36 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCC-----C---------------------------------------Cee
Confidence 69999999999999999999999999997653 3 478
Q ss_pred eeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCChhHHhhhhhccCceEEEee
Q 040562 170 SVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLV 249 (427)
Q Consensus 170 ~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~~i~~~~Fs~~l~ 249 (427)
.+.|++|+.++|.+++|+|+|++.. .++++.|||+....+.+ ...+||||||+...++.+|+....+++||+||.
T Consensus 37 ~i~Yg~Gs~~~G~~~~D~v~ig~~~----~~~~~~Fg~~~~~~~~~-~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~ 111 (299)
T cd05472 37 QVSYGDGSYTTGDLATDTLTLGSSD----VVPGFAFGCGHDNEGLF-GGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLP 111 (299)
T ss_pred eeEeCCCceEEEEEEEEEEEeCCCC----ccCCEEEECCccCCCcc-CCCCEEEECCCCcchHHHHhhHhhcCceEEEcc
Confidence 8999999987799999999999741 67899999999887655 478999999999999999987667899999998
Q ss_pred cCC---CceeeeCCCCcccCCCeeeeccccCCC-CccEEEEeeEEEecceEeeeeccCCCCCcEEEccCCccccccHHHH
Q 040562 250 QQS---STKINFGTNGIVSGSGVVSTPLLAKNP-KTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYA 325 (427)
Q Consensus 250 ~~~---~G~l~fGg~~~~~g~~~~~~p~~~~~~-~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~ 325 (427)
+.. .|+|+|||.+...|+ +.|+|++..+. ..+|.|+|++|+|+++.+...........++|||||+++++|+++|
T Consensus 112 ~~~~~~~G~l~fGg~d~~~g~-l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~ 190 (299)
T cd05472 112 DRSSSSSGYLSFGAAASVPAG-ASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAY 190 (299)
T ss_pred CCCCCCCceEEeCCccccCCC-ceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHH
Confidence 743 399999993222555 99999997643 4789999999999999876532213457899999999999999999
Q ss_pred HHHHHHHHhhhccCC-Cc--CCCcceeccCC--CCccCeEEEEEe-CcEEEecCCceEEEe-CCCeEEEEEEeCC---Cc
Q 040562 326 SKLLSVMSSMIAAQP-VE--GPYDLCYSISS--RPRFPEVTIHFR-DADVKLSTSNVFMNI-SEDLVCSVFNARD---DI 395 (427)
Q Consensus 326 ~~i~~~l~~~~~~~~-~~--~~~~~C~~~~~--~~~~P~i~~~f~-g~~~~l~~~~y~~~~-~~~~~C~~i~~~~---~~ 395 (427)
++|.+++.+...... .. ..+..|+.... ...+|+|+|+|+ |+++.|++++|+++. ..+..|+++...+ ..
T Consensus 191 ~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~ 270 (299)
T cd05472 191 AALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGGL 270 (299)
T ss_pred HHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCCCC
Confidence 999999988764221 11 23345986532 237999999998 799999999999843 3467899976542 57
Q ss_pred ceechhhhcceEEEEeCCCCEEEEeeCCC
Q 040562 396 PLYGNIMQTNFLIGYDIEGRTVSFKPTDC 424 (427)
Q Consensus 396 ~ilG~~fl~~~y~vfD~~~~riGfa~~~c 424 (427)
||||+.|||++|+|||++++|||||+++|
T Consensus 271 ~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 271 SIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEEchHHccceEEEEECCCCEEeEecCCC
Confidence 99999999999999999999999999999
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=5.7e-55 Score=420.84 Aligned_cols=298 Identities=25% Similarity=0.436 Sum_probs=249.5
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPP--SQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKD 159 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~--~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 159 (427)
.+.++.+.+|+++|+||||+|++.|++||||+++||+|..|.. ..| ..++.|||++|+|++...
T Consensus 3 ~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c--~~~~~y~~~~Sst~~~~~------------ 68 (329)
T cd05485 3 PLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIAC--LLHNKYDSTKSSTYKKNG------------ 68 (329)
T ss_pred cceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccc--cCCCeECCcCCCCeEECC------------
Confidence 4567789999999999999999999999999999999999972 246 457889999999999865
Q ss_pred CCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCChh-----
Q 040562 160 SCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDASL----- 232 (427)
Q Consensus 160 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~sl----- 232 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.||++....+ .| ....+||||||++..+.
T Consensus 69 -------~~~~i~Y~~g~~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p 135 (329)
T cd05485 69 -------TEFAIQYGSGSL-SGFLSTDTVSVGGV-----SVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVP 135 (329)
T ss_pred -------eEEEEEECCceE-EEEEecCcEEECCE-----EECCEEEEEEEecCCccccccccceEEEcCCccccccCCCC
Confidence 899999999985 59999999999987 889999999987765 34 46689999999986652
Q ss_pred -----HHhhhhhccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeec
Q 040562 233 -----ISQMKTTIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVIS 301 (427)
Q Consensus 233 -----~~ql~~i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 301 (427)
.+| +.+.+++||+||.+.. .|+|+||| +.++.|+ +.|+|+.. ..+|.|++++++|+++.+..
T Consensus 136 ~~~~l~~q-g~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~~~~i~v~~~~~~~-- 208 (329)
T cd05485 136 VFYNMVNQ-KLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGN-FTYLPVTR---KGYWQFKMDSVSVGEGEFCS-- 208 (329)
T ss_pred HHHHHHhC-CCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccc-eEEEEcCC---ceEEEEEeeEEEECCeeecC--
Confidence 334 5677899999998642 29999999 4566666 99999975 78999999999999987642
Q ss_pred cCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeC
Q 040562 302 GSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNIS 381 (427)
Q Consensus 302 ~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~ 381 (427)
....+||||||+++++|++++++|.+++...... . ..+..+|+... ++|+|+|+|+|+++.|++++|+++..
T Consensus 209 ---~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~-~-~~~~~~C~~~~---~~p~i~f~fgg~~~~i~~~~yi~~~~ 280 (329)
T cd05485 209 ---GGCQAIADTGTSLIAGPVDEIEKLNNAIGAKPII-G-GEYMVNCSAIP---SLPDITFVLGGKSFSLTGKDYVLKVT 280 (329)
T ss_pred ---CCcEEEEccCCcceeCCHHHHHHHHHHhCCcccc-C-CcEEEeccccc---cCCcEEEEECCEEeEEChHHeEEEec
Confidence 3568999999999999999999999988754221 1 14567898643 67999999999999999999999865
Q ss_pred C--CeEEEE-EEeC------CCcceechhhhcceEEEEeCCCCEEEEee
Q 040562 382 E--DLVCSV-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 382 ~--~~~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
+ ...|++ |+.. ++.||||+.|||++|+|||++++|||||+
T Consensus 281 ~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 281 QMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 3 458986 7743 24799999999999999999999999985
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.7e-54 Score=427.06 Aligned_cols=301 Identities=19% Similarity=0.359 Sum_probs=245.4
Q ss_pred CcccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCC
Q 040562 78 KVSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPI 157 (427)
Q Consensus 78 ~~~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~ 157 (427)
....++.+..+.+|+++|+||||+|++.|+|||||+++||+|..|....| +.++.|||++|+|++..+
T Consensus 126 ~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C--~~~~~yd~s~SsT~~~~~---------- 193 (450)
T PTZ00013 126 NDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGC--SIKNLYDSSKSKSYEKDG---------- 193 (450)
T ss_pred CCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCcccc--ccCCCccCccCcccccCC----------
Confidence 44455667788899999999999999999999999999999999985567 577899999999998865
Q ss_pred CCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC---CC-CCCCceEeecCCCCCh--
Q 040562 158 KDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG---KF-NSKTDGIVGLGGGDAS-- 231 (427)
Q Consensus 158 ~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~---~~-~~~~~GilGLg~~~~s-- 231 (427)
+.|.+.|++|++ .|.+++|+|+||+. .++ ..|+++.+... .+ ...+|||||||++..+
T Consensus 194 ---------~~~~i~YG~Gsv-~G~~~~Dtv~iG~~-----~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~ 257 (450)
T PTZ00013 194 ---------TKVDITYGSGTV-KGFFSKDLVTLGHL-----SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIG 257 (450)
T ss_pred ---------cEEEEEECCceE-EEEEEEEEEEECCE-----EEc-cEEEEEEeccccccceecccccceecccCCccccc
Confidence 899999999985 59999999999986 776 57888776542 23 3568999999998654
Q ss_pred ----hHHhh---hhhccCceEEEeecCC--CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeee
Q 040562 232 ----LISQM---KTTIAGKFSYCLVQQS--STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVI 300 (427)
Q Consensus 232 ----l~~ql---~~i~~~~Fs~~l~~~~--~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~ 300 (427)
++.+| +.+.+++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. ..+|.|+++ +.+|....
T Consensus 258 ~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~-L~y~pv~~---~~yW~I~l~-v~~G~~~~--- 329 (450)
T PTZ00013 258 SIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGN-ITYEKLNH---DLYWQIDLD-VHFGKQTM--- 329 (450)
T ss_pred cCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccc-eEEEEcCc---CceEEEEEE-EEECceec---
Confidence 33333 5578899999998653 39999999 5667777 99999975 679999998 66664332
Q ss_pred ccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEe
Q 040562 301 SGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNI 380 (427)
Q Consensus 301 ~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~ 380 (427)
....+|+||||+++++|+++++++.+++..... .....+..+|+. ..+|+|+|+|+|.+++|+|++|+.+.
T Consensus 330 ----~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~-~~~~~y~~~C~~----~~lP~i~F~~~g~~~~L~p~~Yi~~~ 400 (450)
T PTZ00013 330 ----QKANVIVDSGTTTITAPSEFLNKFFANLNVIKV-PFLPFYVTTCDN----KEMPTLEFKSANNTYTLEPEYYMNPL 400 (450)
T ss_pred ----cccceEECCCCccccCCHHHHHHHHHHhCCeec-CCCCeEEeecCC----CCCCeEEEEECCEEEEECHHHheehh
Confidence 256799999999999999999999998865322 112245677974 26899999999999999999998753
Q ss_pred C--CCeEEEE-EEeCC---CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 381 S--EDLVCSV-FNARD---DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 381 ~--~~~~C~~-i~~~~---~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
. ++..|+. |++.+ +.||||++|||++|+|||++++|||||+++
T Consensus 401 ~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 401 LDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred ccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 2 3468986 77643 579999999999999999999999999986
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=8.2e-53 Score=411.60 Aligned_cols=303 Identities=23% Similarity=0.383 Sum_probs=236.7
Q ss_pred ccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCce
Q 040562 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCR 168 (427)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (427)
.+|+++|.||||+|+|.|+|||||+++||+|.+|. +.++.|||++|+|++..+ |.
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~------~~~~~f~~~~SsT~~~~~-------------------~~ 56 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP------FIHTYFHRELSSTYRDLG-------------------KG 56 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc------cccccCCchhCcCcccCC-------------------ce
Confidence 47999999999999999999999999999998774 356789999999999876 89
Q ss_pred eeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCC------------hhHH
Q 040562 169 YSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDA------------SLIS 234 (427)
Q Consensus 169 ~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~------------sl~~ 234 (427)
|++.|++|+.. |.+++|+|+|++.... .+ .+.|+++....+.+ ....+||||||++.+ ++++
T Consensus 57 ~~i~Yg~Gs~~-G~~~~D~v~ig~~~~~--~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~ 132 (364)
T cd05473 57 VTVPYTQGSWE-GELGTDLVSIPKGPNV--TF-RANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVK 132 (364)
T ss_pred EEEEECcceEE-EEEEEEEEEECCCCcc--ce-EEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHh
Confidence 99999999874 9999999999863111 11 13455665544433 236799999999865 3556
Q ss_pred hhhhhccCceEEEeec---------C--CCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeec
Q 040562 235 QMKTTIAGKFSYCLVQ---------Q--SSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVIS 301 (427)
Q Consensus 235 ql~~i~~~~Fs~~l~~---------~--~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 301 (427)
| +.+ .++||++|.. . ..|+|+||| +.++.|+ +.|+|+.. ..+|.|.+++|+|+++.+....
T Consensus 133 q-~~~-~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~-l~~~p~~~---~~~~~v~l~~i~vg~~~~~~~~ 206 (364)
T cd05473 133 Q-TGI-PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGD-IWYTPIRE---EWYYEVIILKLEVGGQSLNLDC 206 (364)
T ss_pred c-cCC-ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCC-ceEEecCc---ceeEEEEEEEEEECCEeccccc
Confidence 6 334 5799998852 1 129999999 4567776 99999986 6799999999999999887532
Q ss_pred cCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc-----CCCcceeccCCC--CccCeEEEEEeC------cE
Q 040562 302 GSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE-----GPYDLCYSISSR--PRFPEVTIHFRD------AD 368 (427)
Q Consensus 302 ~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~-----~~~~~C~~~~~~--~~~P~i~~~f~g------~~ 368 (427)
.......+||||||+++++|++++++|.+++.++....... .+..+|+..... ..+|+|+|+|+| .+
T Consensus 207 ~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~ 286 (364)
T cd05473 207 KEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFR 286 (364)
T ss_pred ccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEE
Confidence 21123479999999999999999999999999875422111 224579865321 258999999976 36
Q ss_pred EEecCCceEEEeC---CCeEEEE--EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 369 VKLSTSNVFMNIS---EDLVCSV--FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 369 ~~l~~~~y~~~~~---~~~~C~~--i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
+.|+|++|+.... .+..|++ +.+..+.||||+.|||++|+|||++++|||||+++|..
T Consensus 287 l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~ 349 (364)
T cd05473 287 ITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAE 349 (364)
T ss_pred EEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEeccccc
Confidence 8999999988643 2467975 33334679999999999999999999999999999986
No 17
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.3e-51 Score=399.94 Aligned_cols=309 Identities=21% Similarity=0.364 Sum_probs=245.5
Q ss_pred eCCCCcE-EEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCC-CCC-----------CCCCC
Q 040562 97 IGTPPVE-ILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAP-PIK-----------DSCSA 163 (427)
Q Consensus 97 iGtP~q~-~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~-~~~-----------~~c~~ 163 (427)
+|||-.+ +.|++||||+++||+|.+ .+|+||+.++|+++.|+. ... ..|.+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~----------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~ 65 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA----------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN 65 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC----------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCC
Confidence 5888777 999999999999997763 357899999999999986 321 13432
Q ss_pred CCCceeeee-eCCCCeEEEEEEEEEEEEcCCCCCc---eecCcEEEEeEeecCC-CCCCCCceEeecCCCCChhHHhhhh
Q 040562 164 EGNCRYSVS-YGDDSFSNGDLATETVTVGSTSGQA---VALPEIVFGCGTKNGG-KFNSKTDGIVGLGGGDASLISQMKT 238 (427)
Q Consensus 164 ~~~~~~~~~-Y~~g~~~~G~~~~D~v~ig~~~~~~---~~~~~~~fg~~~~~~~-~~~~~~~GilGLg~~~~sl~~ql~~ 238 (427)
+.|.|... |++|+...|++++|+|+|+..++.. ..++++.|||+.+... .+...+|||||||++++|+++||..
T Consensus 66 -~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~ 144 (362)
T cd05489 66 -NTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLAS 144 (362)
T ss_pred -CcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhh
Confidence 35878665 8899888899999999998654332 3688999999988643 2334589999999999999999865
Q ss_pred h--ccCceEEEeecCC--CceeeeCCCC--ccc-----CCCeeeeccccCCC-CccEEEEeeEEEecceEeeeeccC---
Q 040562 239 T--IAGKFSYCLVQQS--STKINFGTNG--IVS-----GSGVVSTPLLAKNP-KTFYSLTLDAISVGDQRLGVISGS--- 303 (427)
Q Consensus 239 i--~~~~Fs~~l~~~~--~G~l~fGg~~--~~~-----g~~~~~~p~~~~~~-~~~w~v~l~~i~v~~~~~~~~~~~--- 303 (427)
. .+++||+||.+.. .|+|+||+.+ .+. ...+.|+|++.++. ..+|.|+|++|+||++.+.+++..
T Consensus 145 ~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~ 224 (362)
T cd05489 145 AFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSAN 224 (362)
T ss_pred hcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccc
Confidence 3 3589999998752 3999999932 222 13499999997642 579999999999999988764321
Q ss_pred --CCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc----CCCcceeccCC------CCccCeEEEEEeC--cEE
Q 040562 304 --NPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE----GPYDLCYSISS------RPRFPEVTIHFRD--ADV 369 (427)
Q Consensus 304 --~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~----~~~~~C~~~~~------~~~~P~i~~~f~g--~~~ 369 (427)
.+..++||||||++++||+++|++|.+++.+++...... ...+.|+.... ...+|+|+|+|+| +++
T Consensus 225 ~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~ 304 (362)
T cd05489 225 DRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNW 304 (362)
T ss_pred cccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEE
Confidence 345789999999999999999999999999876532211 12357987421 2479999999986 999
Q ss_pred EecCCceEEEeCCCeEEEEEEeCC----CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 370 KLSTSNVFMNISEDLVCSVFNARD----DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 370 ~l~~~~y~~~~~~~~~C~~i~~~~----~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
.|++++|+++..++..|++|.+.+ ..||||+.|||++|++||++++|||||+.
T Consensus 305 ~l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 305 TIFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 999999999987778999988654 46999999999999999999999999975
No 18
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.2e-51 Score=387.55 Aligned_cols=258 Identities=32% Similarity=0.589 Sum_probs=218.1
Q ss_pred ccEEEEEEeCCCCcEEEEEEEcCCCceeeeCC-CCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCc
Q 040562 89 GEYLIRISIGTPPVEILAVADTGSDLIWTQCQ-PCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNC 167 (427)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~-~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~ 167 (427)
++|+++|.||||||++.|++||||+++||+|. +|. .| . |
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~--~c-------------------~-------------------c 40 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT--GC-------------------Q-------------------C 40 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC--CC-------------------c-------------------C
Confidence 57999999999999999999999999999984 676 55 1 8
Q ss_pred eeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC---CCCCceEeecCCCCChhHHhhhhh--ccC
Q 040562 168 RYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF---NSKTDGIVGLGGGDASLISQMKTT--IAG 242 (427)
Q Consensus 168 ~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~---~~~~~GilGLg~~~~sl~~ql~~i--~~~ 242 (427)
.|++.|++|+.+.|.+++|+|+|+..++. ..++++.|||+....+.+ ....+||||||++..++++||... .++
T Consensus 41 ~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~-~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~ 119 (273)
T cd05475 41 DYEIEYADGGSSMGVLVTDIFSLKLTNGS-RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKN 119 (273)
T ss_pred ccEeEeCCCCceEEEEEEEEEEEeecCCC-cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCc
Confidence 99999998877789999999999753222 267899999998766532 357899999999999999998642 278
Q ss_pred ceEEEeecCCCceeeeCCCCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcEEEccCCccccccH
Q 040562 243 KFSYCLVQQSSTKINFGTNGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPP 322 (427)
Q Consensus 243 ~Fs~~l~~~~~G~l~fGg~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~ 322 (427)
+||+||.+...|.|+||+..++.++ +.|+|+..++...+|.|++.+|+||++.+. .....+||||||+++++|+
T Consensus 120 ~Fs~~l~~~~~g~l~~G~~~~~~g~-i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~-----~~~~~~ivDTGTt~t~lp~ 193 (273)
T cd05475 120 VIGHCLSSNGGGFLFFGDDLVPSSG-VTWTPMRRESQKKHYSPGPASLLFNGQPTG-----GKGLEVVFDSGSSYTYFNA 193 (273)
T ss_pred eEEEEccCCCCeEEEECCCCCCCCC-eeecccccCCCCCeEEEeEeEEEECCEECc-----CCCceEEEECCCceEEcCC
Confidence 9999998754599999986566665 999999875445799999999999998543 2367899999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeC----cEEEecCCceEEEeCCCeEEEEEEeCC-----
Q 040562 323 AYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRD----ADVKLSTSNVFMNISEDLVCSVFNARD----- 393 (427)
Q Consensus 323 ~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g----~~~~l~~~~y~~~~~~~~~C~~i~~~~----- 393 (427)
++| +|+|+|+|++ ++++|++++|++...++..|+++....
T Consensus 194 ~~y-------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~ 242 (273)
T cd05475 194 QAY-------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSEIGLG 242 (273)
T ss_pred ccc-------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCCcCCC
Confidence 876 4899999987 699999999999876677899955321
Q ss_pred CcceechhhhcceEEEEeCCCCEEEEeeCCC
Q 040562 394 DIPLYGNIMQTNFLIGYDIEGRTVSFKPTDC 424 (427)
Q Consensus 394 ~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c 424 (427)
+.||||+.|||++|++||++++|||||+++|
T Consensus 243 ~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 243 NTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred ceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 4799999999999999999999999999999
No 19
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=7.1e-51 Score=383.79 Aligned_cols=264 Identities=26% Similarity=0.432 Sum_probs=220.3
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCceee
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYS 170 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~ 170 (427)
|+++|+||||+|++.|+|||||+++||+|..|. .|....++.|||++|+|++... .+.|.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~--~~~~~~~~~y~~~~Sst~~~~~------------------~~~~~ 60 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP--AAQQGGHKLYDPSKSSTAKLLP------------------GATWS 60 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC--chhhccCCcCCCccCccceecC------------------CcEEE
Confidence 899999999999999999999999999999998 7766778889999999998753 17999
Q ss_pred eeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCChh---------HHhhhh-
Q 040562 171 VSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDASL---------ISQMKT- 238 (427)
Q Consensus 171 ~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~sl---------~~ql~~- 238 (427)
+.|++|+.+.|.+++|+|+|++. .++++.||+++...+ .+ ....+||||||++..+. ..+|..
T Consensus 61 i~Y~~G~~~~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~ 135 (278)
T cd06097 61 ISYGDGSSASGIVYTDTVSIGGV-----EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSS 135 (278)
T ss_pred EEeCCCCeEEEEEEEEEEEECCE-----EECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHh
Confidence 99999986679999999999987 899999999998776 33 56899999999976542 223221
Q ss_pred hccCceEEEeecCCCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcEEEccCCc
Q 040562 239 TIAGKFSYCLVQQSSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTT 316 (427)
Q Consensus 239 i~~~~Fs~~l~~~~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiDSGt~ 316 (427)
..+++||+||.+...|+|+||| ++++.|+ +.|+|+... ..+|.|++++|+|+++.... .....++|||||+
T Consensus 136 ~~~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~-l~~~pi~~~--~~~w~v~l~~i~v~~~~~~~----~~~~~~iiDSGTs 208 (278)
T cd06097 136 LDAPLFTADLRKAAPGFYTFGYIDESKYKGE-ISWTPVDNS--SGFWQFTSTSYTVGGDAPWS----RSGFSAIADTGTT 208 (278)
T ss_pred ccCceEEEEecCCCCcEEEEeccChHHcCCc-eEEEEccCC--CcEEEEEEeeEEECCcceee----cCCceEEeecCCc
Confidence 1268999999875459999999 4567776 999999863 57999999999999874433 3478899999999
Q ss_pred cccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEEEEEeCCCcc
Q 040562 317 LTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVFNARDDIP 396 (427)
Q Consensus 317 ~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~~i~~~~~~~ 396 (427)
++++|++++++|.+++.+.........+..+|.. .+|+|+|+| .|
T Consensus 209 ~~~lP~~~~~~l~~~l~g~~~~~~~~~~~~~C~~-----~~P~i~f~~------------------------------~~ 253 (278)
T cd06097 209 LILLPDAIVEAYYSQVPGAYYDSEYGGWVFPCDT-----TLPDLSFAV------------------------------FS 253 (278)
T ss_pred hhcCCHHHHHHHHHhCcCCcccCCCCEEEEECCC-----CCCCEEEEE------------------------------EE
Confidence 9999999999999998543222222245677884 379999999 69
Q ss_pred eechhhhcceEEEEeCCCCEEEEee
Q 040562 397 LYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 397 ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
|||++|||++|+|||++|+|||||+
T Consensus 254 ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 254 ILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred EEcchhhCceeEEEcCCCceeeecC
Confidence 9999999999999999999999996
No 20
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=9.9e-50 Score=373.26 Aligned_cols=251 Identities=47% Similarity=0.844 Sum_probs=215.8
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCcee
Q 040562 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRY 169 (427)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (427)
+|+++|+||||+|++.|+|||||+++||+| |.|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-----------------------------------------------~~~ 33 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-----------------------------------------------CSY 33 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-----------------------------------------------Cce
Confidence 699999999999999999999999999954 257
Q ss_pred eeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCChhHHhhhhhccCceEEEee
Q 040562 170 SVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYCLV 249 (427)
Q Consensus 170 ~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~~i~~~~Fs~~l~ 249 (427)
.+.|++|+...|.+++|+|.|++.+ ..++++.|||+....+......+||||||+...++++||.... ++||+||.
T Consensus 34 ~~~Y~dg~~~~G~~~~D~v~~g~~~---~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l~ 109 (265)
T cd05476 34 EYSYGDGSSTSGVLATETFTFGDSS---VSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCLV 109 (265)
T ss_pred EeEeCCCceeeeeEEEEEEEecCCC---CccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhccc-CeeEEEcc
Confidence 7899999888899999999999852 2578999999998876225678999999999999999987544 79999998
Q ss_pred cC----CCceeeeCC-CCcccCCCeeeeccccCC-CCccEEEEeeEEEecceEeeeecc-----CCCCCcEEEccCCccc
Q 040562 250 QQ----SSTKINFGT-NGIVSGSGVVSTPLLAKN-PKTFYSLTLDAISVGDQRLGVISG-----SNPGGDIVIDSGTTLT 318 (427)
Q Consensus 250 ~~----~~G~l~fGg-~~~~~g~~~~~~p~~~~~-~~~~w~v~l~~i~v~~~~~~~~~~-----~~~~~~~iiDSGt~~~ 318 (427)
+. ..|+|+||+ +..+.++ +.|+|++.++ ...+|.|++++|+|+++.+.++.. ......++|||||+++
T Consensus 110 ~~~~~~~~G~l~fGg~d~~~~~~-l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~ 188 (265)
T cd05476 110 PHDDTGGSSPLILGDAADLGGSG-VVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLT 188 (265)
T ss_pred CCCCCCCCCeEEECCcccccCCC-ceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcce
Confidence 74 129999999 4345555 9999999753 257999999999999998763211 1346889999999999
Q ss_pred cccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEe-CcEEEecCCceEEEeCCCeEEEEEEeC--CCc
Q 040562 319 YLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFR-DADVKLSTSNVFMNISEDLVCSVFNAR--DDI 395 (427)
Q Consensus 319 ~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~-g~~~~l~~~~y~~~~~~~~~C~~i~~~--~~~ 395 (427)
++|++++ |+|+|+|+ |.++.+++++|+++..++..|+++... .+.
T Consensus 189 ~lp~~~~--------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~ 236 (265)
T cd05476 189 YLPDPAY--------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVCLAILSSSSGGV 236 (265)
T ss_pred EcCcccc--------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEEEEEecCCCCCc
Confidence 9999886 78999999 799999999999977667899997765 378
Q ss_pred ceechhhhcceEEEEeCCCCEEEEeeCCC
Q 040562 396 PLYGNIMQTNFLIGYDIEGRTVSFKPTDC 424 (427)
Q Consensus 396 ~ilG~~fl~~~y~vfD~~~~riGfa~~~c 424 (427)
||||++|||++|++||++++|||||+++|
T Consensus 237 ~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 237 SILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred EEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 99999999999999999999999999999
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.1e-49 Score=383.35 Aligned_cols=292 Identities=27% Similarity=0.533 Sum_probs=247.1
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCC-CCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCce
Q 040562 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQC-YKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCR 168 (427)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C-~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (427)
+|+++|+||||+|+++|++||||+++||++..|. .| .......|++++|+|++... +.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~--~~~~~~~~~~y~~~~S~t~~~~~-------------------~~ 59 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCN--SCSSCASSGFYNPSKSSTFSNQG-------------------KP 59 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTEC--SHTHHCTSC-BBGGGSTTEEEEE-------------------EE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccc--cccccccccccccccccccccce-------------------ee
Confidence 6999999999999999999999999999999988 44 33577899999999999876 78
Q ss_pred eeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCC-C-CCCCceEeecCCCC-------ChhHHhh---
Q 040562 169 YSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGK-F-NSKTDGIVGLGGGD-------ASLISQM--- 236 (427)
Q Consensus 169 ~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~-------~sl~~ql--- 236 (427)
+.+.|++|+ ++|.+++|+|+|++. .+.++.||++....+. + ....+||||||++. .+++.+|
T Consensus 60 ~~~~y~~g~-~~G~~~~D~v~ig~~-----~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~ 133 (317)
T PF00026_consen 60 FSISYGDGS-VSGNLVSDTVSIGGL-----TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQ 133 (317)
T ss_dssp EEEEETTEE-EEEEEEEEEEEETTE-----EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHT
T ss_pred eeeeccCcc-cccccccceEeeeec-----cccccceeccccccccccccccccccccccCCcccccccCCcceecchhh
Confidence 999999999 669999999999997 8899999999996553 2 57889999999743 2344444
Q ss_pred hhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcEEEc
Q 040562 237 KTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVID 312 (427)
Q Consensus 237 ~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiD 312 (427)
+.|.+++||++|.+... |.|+||| .+++.|+ +.|+|+.. ..+|.|.+++|.+++..... .....++||
T Consensus 134 g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~-~~~~~~~~---~~~w~v~~~~i~i~~~~~~~----~~~~~~~~D 205 (317)
T PF00026_consen 134 GLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGD-LVWVPLVS---SGYWSVPLDSISIGGESVFS----SSGQQAILD 205 (317)
T ss_dssp TSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESE-EEEEEBSS---TTTTEEEEEEEEETTEEEEE----EEEEEEEEE
T ss_pred ccccccccceeeeecccccchheeeccccccccCc-eeccCccc---cccccccccccccccccccc----ccceeeecc
Confidence 56789999999999863 9999999 6677776 99999995 78999999999999983332 125679999
Q ss_pred cCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCC--eEEEE-E
Q 040562 313 SGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISED--LVCSV-F 389 (427)
Q Consensus 313 SGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~--~~C~~-i 389 (427)
||++++++|++++++|++++.+.... ..+..+|.... .+|.|+|+|++.+++|++++|+.+.... ..|+. |
T Consensus 206 tgt~~i~lp~~~~~~i~~~l~~~~~~---~~~~~~c~~~~---~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i 279 (317)
T PF00026_consen 206 TGTSYIYLPRSIFDAIIKALGGSYSD---GVYSVPCNSTD---SLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGI 279 (317)
T ss_dssp TTBSSEEEEHHHHHHHHHHHTTEEEC---SEEEEETTGGG---GSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESE
T ss_pred cccccccccchhhHHHHhhhcccccc---eeEEEeccccc---ccceEEEeeCCEEEEecchHhcccccccccceeEeee
Confidence 99999999999999999999877655 24667798653 6899999999999999999999987653 48988 8
Q ss_pred Ee---C--CCcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 390 NA---R--DDIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 390 ~~---~--~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
.+ . ...+|||.+|||++|++||++++|||||++
T Consensus 280 ~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 280 QPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 77 2 278999999999999999999999999985
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=5.2e-48 Score=367.91 Aligned_cols=267 Identities=25% Similarity=0.416 Sum_probs=225.4
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCcee
Q 040562 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRY 169 (427)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (427)
.|+++|.||||+|++.|++||||+++||+ .|
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-------------------------------------------------~~ 32 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-------------------------------------------------DF 32 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-------------------------------------------------ee
Confidence 69999999999999999999999999994 24
Q ss_pred eeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCC-----------hhHHhhh-
Q 040562 170 SVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDA-----------SLISQMK- 237 (427)
Q Consensus 170 ~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~-----------sl~~ql~- 237 (427)
++.|++|+.+.|.+++|+|+|++. .++++.|||++.. ...+||||||++.. +++.||.
T Consensus 33 ~~~Y~~g~~~~G~~~~D~v~~g~~-----~~~~~~fg~~~~~-----~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~ 102 (295)
T cd05474 33 SISYGDGTSASGTWGTDTVSIGGA-----TVKNLQFAVANST-----SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKK 102 (295)
T ss_pred EEEeccCCcEEEEEEEEEEEECCe-----EecceEEEEEecC-----CCCcceeeECCCCCcccccCCCcCCCHHHHHHH
Confidence 678999777779999999999987 8899999999984 35789999999876 4667664
Q ss_pred --hhccCceEEEeecCC--CceeeeCC--CCcccCCCeeeeccccCCC---CccEEEEeeEEEecceEeeeeccCCCCCc
Q 040562 238 --TTIAGKFSYCLVQQS--STKINFGT--NGIVSGSGVVSTPLLAKNP---KTFYSLTLDAISVGDQRLGVISGSNPGGD 308 (427)
Q Consensus 238 --~i~~~~Fs~~l~~~~--~G~l~fGg--~~~~~g~~~~~~p~~~~~~---~~~w~v~l~~i~v~~~~~~~~~~~~~~~~ 308 (427)
.+.+++||+||.+.. .|.|+||| .+++.++ +.|+|+...+. ..+|.|++++|+++++.+..+. ......
T Consensus 103 ~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~-~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~-~~~~~~ 180 (295)
T cd05474 103 QGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGD-LVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTL-LSKNLP 180 (295)
T ss_pred CCcccceEEEEEeCCCCCCceeEEEeeeccceeece-eEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccc-cCCCcc
Confidence 367899999999853 39999999 4567776 99999997542 2789999999999998764311 145789
Q ss_pred EEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeC----CCe
Q 040562 309 IVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNIS----EDL 384 (427)
Q Consensus 309 ~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~----~~~ 384 (427)
++|||||++++||++++++|++++.+....... .+..+|+... . |+|+|+|+|.+++||+++|+++.. .+.
T Consensus 181 ~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~~~-~~~~~C~~~~---~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~ 255 (295)
T cd05474 181 ALLDSGTTLTYLPSDIVDAIAKQLGATYDSDEG-LYVVDCDAKD---D-GSLTFNFGGATISVPLSDLVLPASTDDGGDG 255 (295)
T ss_pred EEECCCCccEeCCHHHHHHHHHHhCCEEcCCCc-EEEEeCCCCC---C-CEEEEEECCeEEEEEHHHhEeccccCCCCCC
Confidence 999999999999999999999999876543322 4677899754 3 999999999999999999998864 256
Q ss_pred EEE-EEEeCC-CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 385 VCS-VFNARD-DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 385 ~C~-~i~~~~-~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
.|+ +|++.+ +.||||++|||++|++||.+++|||||++
T Consensus 256 ~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 256 ACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred CeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 896 488876 78999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=7.8e-45 Score=343.82 Aligned_cols=265 Identities=33% Similarity=0.669 Sum_probs=219.9
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCC--CCCCCCCcceeecCCCCCCCCCCCCCCCCCCCce
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPL--FDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCR 168 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~--y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (427)
|+++|.||||+|++.|++||||+++||+|..|. .|..+.... |++..|+++.... |.
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~--~~~~~~~~~~~~~~~~s~~~~~~~-------------------~~ 59 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT--SCSCQKHPRFKYDSSKSSTYKDTG-------------------CT 59 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC--ccccccCCCCccCccCCceeecCC-------------------CE
Confidence 789999999999999999999999999999998 554344444 7888888776643 89
Q ss_pred eeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC-CCCCceEeecCCCC------ChhHHhhhh---
Q 040562 169 YSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF-NSKTDGIVGLGGGD------ASLISQMKT--- 238 (427)
Q Consensus 169 ~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~------~sl~~ql~~--- 238 (427)
+++.|++|+.. |.+++|+|+|++. .++++.|||+......+ ....+||||||+.. .+++.||..
T Consensus 60 ~~~~Y~~g~~~-g~~~~D~v~~~~~-----~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~ 133 (283)
T cd05471 60 FSITYGDGSVT-GGLGTDTVTIGGL-----TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGL 133 (283)
T ss_pred EEEEECCCeEE-EEEEEeEEEECCE-----EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCC
Confidence 99999998776 9999999999997 79999999999988644 57899999999988 677777754
Q ss_pred hccCceEEEeecC----CCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcEEEc
Q 040562 239 TIAGKFSYCLVQQ----SSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVID 312 (427)
Q Consensus 239 i~~~~Fs~~l~~~----~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiD 312 (427)
|.+++||+||.+. ..|.|+||| ..++.++ +.|+|++.. ...+|.|.+++|.|++...... .....++||
T Consensus 134 i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~-~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~~~---~~~~~~iiD 208 (283)
T cd05471 134 ISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGD-LTYTPVVSN-GPGYWQVPLDGISVGGKSVISS---SGGGGAIVD 208 (283)
T ss_pred CCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCc-eEEEecCCC-CCCEEEEEeCeEEECCceeeec---CCCcEEEEe
Confidence 5789999999985 339999999 3345555 999999975 2679999999999998741111 457899999
Q ss_pred cCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEEEEEeC
Q 040562 313 SGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVFNAR 392 (427)
Q Consensus 313 SGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~~i~~~ 392 (427)
|||++++||++++++|++++.+....... .+...|... ..+|+|+|+|
T Consensus 209 sGt~~~~lp~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~---~~~p~i~f~f---------------------------- 256 (283)
T cd05471 209 SGTSLIYLPSSVYDAILKALGAAVSSSDG-GYGVDCSPC---DTLPDITFTF---------------------------- 256 (283)
T ss_pred cCCCCEeCCHHHHHHHHHHhCCcccccCC-cEEEeCccc---CcCCCEEEEE----------------------------
Confidence 99999999999999999999887654111 223334433 3789999999
Q ss_pred CCcceechhhhcceEEEEeCCCCEEEEee
Q 040562 393 DDIPLYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 393 ~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
.+|||++|||++|++||++++|||||+
T Consensus 257 --~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 --LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred --EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 699999999999999999999999986
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=1e-30 Score=225.68 Aligned_cols=158 Identities=49% Similarity=0.900 Sum_probs=128.5
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCC-CCC--CCCCCCCCc
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAP-PIK--DSCSAEGNC 167 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~-~~~--~~c~~~~~~ 167 (427)
|+++|.||||+|++.|++||||+++|++| ..+.|+|++|+||+.++|.+++|.. +.. ..|..++.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C-----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C 69 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC-----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSC 69 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET---------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC-----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcc
Confidence 89999999999999999999999999977 4578999999999999999999986 432 234445779
Q ss_pred eeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCChhHHhhhhhccCceEEE
Q 040562 168 RYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMKTTIAGKFSYC 247 (427)
Q Consensus 168 ~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~~i~~~~Fs~~ 247 (427)
.|.+.|++++.+.|.+++|+|+++...+....+.++.|||+....+.+ ...+||||||+.++||++||+....++||||
T Consensus 70 ~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~-~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyC 148 (164)
T PF14543_consen 70 PYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF-YGADGILGLGRGPLSLPSQLASSSGNKFSYC 148 (164)
T ss_dssp EEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS-TTEEEEEE-SSSTTSHHHHHHHH--SEEEEE
T ss_pred cceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC-cCCCcccccCCCcccHHHHHHHhcCCeEEEE
Confidence 999999999999999999999999875444578899999999998765 5899999999999999999987788999999
Q ss_pred eec-CCC--ceeeeCC
Q 040562 248 LVQ-QSS--TKINFGT 260 (427)
Q Consensus 248 l~~-~~~--G~l~fGg 260 (427)
|.+ ... |.|+||+
T Consensus 149 L~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 149 LPSSSPSSSGFLSFGD 164 (164)
T ss_dssp B-S-SSSSEEEEEECS
T ss_pred CCCCCCCCCEEEEeCc
Confidence 999 222 9999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.92 E-value=1.1e-24 Score=187.91 Aligned_cols=140 Identities=36% Similarity=0.724 Sum_probs=114.6
Q ss_pred cEEEEeeEEEecceEeeeeccC----CCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCC----Cc--CCCcceecc
Q 040562 282 FYSLTLDAISVGDQRLGVISGS----NPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQP----VE--GPYDLCYSI 351 (427)
Q Consensus 282 ~w~v~l~~i~v~~~~~~~~~~~----~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~----~~--~~~~~C~~~ 351 (427)
+|+|+|.+|+||++++.++... ++..+++|||||++++||+++|+++.+++.+++.... .. ..+..|++.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 5899999999999999987653 3578999999999999999999999999999886542 11 567789988
Q ss_pred CC------CCccCeEEEEEe-CcEEEecCCceEEEeCCCeEEEEEEeC----CCcceechhhhcceEEEEeCCCCEEEEe
Q 040562 352 SS------RPRFPEVTIHFR-DADVKLSTSNVFMNISEDLVCSVFNAR----DDIPLYGNIMQTNFLIGYDIEGRTVSFK 420 (427)
Q Consensus 352 ~~------~~~~P~i~~~f~-g~~~~l~~~~y~~~~~~~~~C~~i~~~----~~~~ilG~~fl~~~y~vfD~~~~riGfa 420 (427)
.. ...+|+|+|+|. |++++|++++|++...++..|++|.++ ++..|||+.+|++++++||++++||||+
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~igF~ 160 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIGFA 160 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEEEe
Confidence 65 247999999999 689999999999999888999998877 2789999999999999999999999999
Q ss_pred e
Q 040562 421 P 421 (427)
Q Consensus 421 ~ 421 (427)
|
T Consensus 161 ~ 161 (161)
T PF14541_consen 161 P 161 (161)
T ss_dssp E
T ss_pred C
Confidence 7
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.91 E-value=4.8e-24 Score=171.90 Aligned_cols=106 Identities=39% Similarity=0.704 Sum_probs=93.8
Q ss_pred EEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCC-CCCCCCcceeecCCCCCCCCCCCCCCCCCCCceeee
Q 040562 93 IRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLF-DPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYSV 171 (427)
Q Consensus 93 ~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y-~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~ 171 (427)
++|.||||+|++.|+|||||+++||+|..|. .|..+.++.| +|+.|++++... |.|.+
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~--~~~~~~~~~~~~~~~sst~~~~~-------------------~~~~~ 59 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ--SLAIYSHSSYDDPSASSTYSDNG-------------------CTFSI 59 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC--CcccccccccCCcCCCCCCCCCC-------------------cEEEE
Confidence 4799999999999999999999999999998 5654566667 999999998765 89999
Q ss_pred eeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeec
Q 040562 172 SYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGL 225 (427)
Q Consensus 172 ~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGL 225 (427)
.|++|+.. |.++.|+|+|++. .++++.|||+....+.+ ....+|||||
T Consensus 60 ~Y~~g~~~-g~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 60 TYGTGSLS-GGLSTDTVSIGDI-----EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EeCCCeEE-EEEEEEEEEECCE-----EECCEEEEEEEecCCccccccccccccCC
Confidence 99999866 9999999999987 89999999999998753 4678999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.22 E-value=4.9e-06 Score=64.63 Aligned_cols=93 Identities=11% Similarity=0.159 Sum_probs=67.2
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCcee
Q 040562 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRY 169 (427)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (427)
.|++++.|+ .+++++++|||++.+|+...... .+. . .+.+ ....
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~--~l~--~--~~~~----------------------------~~~~ 45 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAE--RLG--L--PLTL----------------------------GGKV 45 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH--HcC--C--CccC----------------------------CCcE
Confidence 589999999 79999999999999999664322 120 0 0000 0355
Q ss_pred eeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCC
Q 040562 170 SVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGG 227 (427)
Q Consensus 170 ~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~ 227 (427)
.+...+|.........+.+++|+. .++++.+........ ..+||||+.+
T Consensus 46 ~~~~~~G~~~~~~~~~~~i~ig~~-----~~~~~~~~v~d~~~~----~~~gIlG~d~ 94 (96)
T cd05483 46 TVQTANGRVRAARVRLDSLQIGGI-----TLRNVPAVVLPGDAL----GVDGLLGMDF 94 (96)
T ss_pred EEEecCCCccceEEEcceEEECCc-----EEeccEEEEeCCccc----CCceEeChHH
Confidence 677777876656777899999987 788888887765432 5789999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.01 E-value=0.0034 Score=51.02 Aligned_cols=95 Identities=12% Similarity=0.210 Sum_probs=63.9
Q ss_pred CCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCC
Q 040562 87 NVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGN 166 (427)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~ 166 (427)
.++.|++++.|. .+++.+++|||++.+-+...--. .. ..++..- .
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~--~L------gl~~~~~-------------------------~ 52 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ--RL------GLDLNRL-------------------------G 52 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH--Hc------CCCcccC-------------------------C
Confidence 478899999998 68999999999999988543221 00 0111110 0
Q ss_pred ceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecC
Q 040562 167 CRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLG 226 (427)
Q Consensus 167 ~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg 226 (427)
....+.=+.|......+.-|.+++|+. .+.|+.+.++... ...+|+||+.
T Consensus 53 ~~~~~~ta~G~~~~~~~~l~~l~iG~~-----~~~nv~~~v~~~~-----~~~~~LLGm~ 102 (121)
T TIGR02281 53 YTVTVSTANGQIKAARVTLDRVAIGGI-----VVNDVDAMVAEGG-----ALSESLLGMS 102 (121)
T ss_pred ceEEEEeCCCcEEEEEEEeCEEEECCE-----EEeCcEEEEeCCC-----cCCceEcCHH
Confidence 233444455665546668899999997 8889998776432 1237999997
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.82 E-value=0.0093 Score=45.28 Aligned_cols=89 Identities=19% Similarity=0.251 Sum_probs=55.9
Q ss_pred EEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCceeeee
Q 040562 93 IRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNCRYSVS 172 (427)
Q Consensus 93 ~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~~ 172 (427)
+++.|+ .+++++++|||++.+.+...-+. .. ...+.... ....+.
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~--~l------~~~~~~~~-------------------------~~~~~~ 45 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAK--KL------GLKPRPKS-------------------------VPISVS 45 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHH--Hc------CCCCcCCc-------------------------eeEEEE
Confidence 367787 68999999999998888554332 11 00111000 123334
Q ss_pred eCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecC
Q 040562 173 YGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLG 226 (427)
Q Consensus 173 Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg 226 (427)
-.+|.........+.+++++. .+.++.|-+... ....+||||+-
T Consensus 46 ~~~g~~~~~~~~~~~i~ig~~-----~~~~~~~~v~~~-----~~~~~~iLG~d 89 (90)
T PF13650_consen 46 GAGGSVTVYRGRVDSITIGGI-----TLKNVPFLVVDL-----GDPIDGILGMD 89 (90)
T ss_pred eCCCCEEEEEEEEEEEEECCE-----EEEeEEEEEECC-----CCCCEEEeCCc
Confidence 445555546666778999986 777888777661 14678999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.67 E-value=0.1 Score=42.61 Aligned_cols=91 Identities=21% Similarity=0.298 Sum_probs=57.1
Q ss_pred CccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCc
Q 040562 88 VGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGNC 167 (427)
Q Consensus 88 ~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~ 167 (427)
...+++++.|+ ++++.+++|||++.+++...-+. .+.-. +... .
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~--~lgl~------~~~~--------------------------~ 57 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE--KCGLM------RLID--------------------------K 57 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH--HcCCc------cccC--------------------------c
Confidence 45689999999 78999999999999999654333 22100 0000 1
Q ss_pred eee-eeeC-CCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecC
Q 040562 168 RYS-VSYG-DDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLG 226 (427)
Q Consensus 168 ~~~-~~Y~-~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg 226 (427)
.+. ...+ ++....|....+.+.+++. ..+ ..|.+... ...|+|||+-
T Consensus 58 ~~~~~~~g~g~~~~~g~~~~~~l~i~~~-----~~~-~~~~Vl~~------~~~d~ILG~d 106 (124)
T cd05479 58 RFQGIAKGVGTQKILGRIHLAQVKIGNL-----FLP-CSFTVLED------DDVDFLIGLD 106 (124)
T ss_pred ceEEEEecCCCcEEEeEEEEEEEEECCE-----Eee-eEEEEECC------CCcCEEecHH
Confidence 111 1222 2233447777888999986 543 56655532 3678999986
No 31
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.59 E-value=0.12 Score=49.39 Aligned_cols=109 Identities=20% Similarity=0.297 Sum_probs=59.2
Q ss_pred cEEEEEEeCCCC----cEE-EEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCC
Q 040562 90 EYLIRISIGTPP----VEI-LAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAE 164 (427)
Q Consensus 90 ~Y~~~i~iGtP~----q~~-~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~ 164 (427)
.-++.|+|=.|. |++ ++++||||.=+=|..+--. .......-+..+ .-..+. +|
T Consensus 23 ~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~-----~~l~~~Lp~~t~-~g~~la------------EC--- 81 (370)
T PF11925_consen 23 IPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALP-----SSLAGSLPQQTG-GGAPLA------------EC--- 81 (370)
T ss_pred ceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhc-----hhhhccCCcccC-CCcchh------------hh---
Confidence 345666665543 555 7999999998776554221 000011111111 111111 22
Q ss_pred CCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeE----------eecCC--CC-CCCCceEeecCCC
Q 040562 165 GNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCG----------TKNGG--KF-NSKTDGIVGLGGG 228 (427)
Q Consensus 165 ~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~----------~~~~~--~~-~~~~~GilGLg~~ 228 (427)
..|++|..| |-+.+-+|+|++.... .++=|.++-. ..-.. .- ....+||||+|.-
T Consensus 82 ------~~F~sgytW-GsVr~AdV~igge~A~--~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 82 ------AQFASGYTW-GSVRTADVTIGGETAS--SIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred ------hhccCcccc-cceEEEEEEEcCeecc--ccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 567888888 9999999999987222 3333333221 11110 11 4578999999974
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.97 E-value=0.094 Score=42.77 Aligned_cols=93 Identities=15% Similarity=0.019 Sum_probs=51.7
Q ss_pred cEEEccCCccccccHHHHHHHHHHHHhhhccC-CC-cCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeE
Q 040562 308 DIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQ-PV-EGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLV 385 (427)
Q Consensus 308 ~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~-~~-~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~ 385 (427)
.+++|||++.+.++++..+++--......... .. ......+. .......++++|..+.+ ++
T Consensus 29 ~~LvDTGAs~s~Is~~~a~~lgl~~~~~~~~~~~~~g~g~~~~~-----g~~~~~~l~i~~~~~~~---~~--------- 91 (124)
T cd05479 29 KAFVDSGAQMTIMSKACAEKCGLMRLIDKRFQGIAKGVGTQKIL-----GRIHLAQVKIGNLFLPC---SF--------- 91 (124)
T ss_pred EEEEeCCCceEEeCHHHHHHcCCccccCcceEEEEecCCCcEEE-----eEEEEEEEEECCEEeee---EE---------
Confidence 47999999999999999877521110000000 00 00000011 01233444444443221 11
Q ss_pred EEEEEeC-CCcceechhhhcceEEEEeCCCCEEEE
Q 040562 386 CSVFNAR-DDIPLYGNIMQTNFLIGYDIEGRTVSF 419 (427)
Q Consensus 386 C~~i~~~-~~~~ilG~~fl~~~y~vfD~~~~riGf 419 (427)
.+.+. +...|||..||+.+-.+.|+.+++|-|
T Consensus 92 --~Vl~~~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 92 --TVLEDDDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred --EEECCCCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 12222 256899999999999999999998853
No 33
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=92.52 E-value=0.16 Score=42.08 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=55.9
Q ss_pred CCcEEEccCCccccccHHHHHHHHHHHHhhhccCCC--cCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCC
Q 040562 306 GGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPV--EGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISED 383 (427)
Q Consensus 306 ~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~--~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~ 383 (427)
...++||||++-.++..+...++--.+...-..-.. .+....|. ...+.+.+.++|.++.... ++.+.
T Consensus 32 ~~~vLiDSGAThsFIs~~~a~~~~l~~~~l~~~~~V~~~g~~~~~~-----~~~~~~~~~i~g~~~~~dl--~vl~l--- 101 (135)
T PF08284_consen 32 PASVLIDSGATHSFISSSFAKKLGLPLEPLPRPIVVSAPGGSINCE-----GVCPDVPLSIQGHEFVVDL--LVLDL--- 101 (135)
T ss_pred EEEEEEecCCCcEEccHHHHHhcCCEEEEccCeeEEeccccccccc-----ceeeeEEEEECCeEEEeee--EEecc---
Confidence 345799999999999988766542111100000000 00011111 1234555555554442111 01111
Q ss_pred eEEEEEEeCCCcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 384 LVCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 384 ~~C~~i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
.+-..|||..+|+.+..+-|+.+++|-|...
T Consensus 102 --------~~~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 102 --------GGYDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred --------cceeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 1246899999999999999999999999753
No 34
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=92.09 E-value=0.19 Score=38.43 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=25.9
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCC
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQPC 122 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c 122 (427)
|++.+.|+ .+++.+++||||+..++..+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~ 30 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTW 30 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHH
Confidence 57899999 7999999999999999966543
No 35
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=89.71 E-value=2.1 Score=32.23 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=22.3
Q ss_pred EEEeCCCCcEEEEEEEcCCCceeeeCCCCC
Q 040562 94 RISIGTPPVEILAVADTGSDLIWTQCQPCP 123 (427)
Q Consensus 94 ~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~ 123 (427)
.+.|. ++++++++|||++.+-+......
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a~ 29 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLGP 29 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHhh
Confidence 45666 68999999999999999665443
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=89.68 E-value=0.63 Score=33.79 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=29.9
Q ss_pred CCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC
Q 040562 87 NVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCP 123 (427)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~ 123 (427)
..+.+++++.|| ++.+.+++|||++...|+..-+.
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~ 39 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLAK 39 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHH
Confidence 457899999999 69999999999999998766444
No 37
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=88.04 E-value=3.3 Score=32.65 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.2
Q ss_pred CcceechhhhcceEEEEeCCCCEE
Q 040562 394 DIPLYGNIMQTNFLIGYDIEGRTV 417 (427)
Q Consensus 394 ~~~ilG~~fl~~~y~vfD~~~~ri 417 (427)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 578999999999999999988753
No 38
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=86.16 E-value=1.5 Score=35.46 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=28.5
Q ss_pred CccEEEEeeEEEecceEeeeeccCCCCCcEEEccCCccccccHHHHHHH
Q 040562 280 KTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKL 328 (427)
Q Consensus 280 ~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i 328 (427)
.++|.++ ++|+|+.+ .++||||.+.+.+++++.+++
T Consensus 9 ~g~~~v~---~~InG~~~----------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNV----------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEE----------EEEEECCCCcEEcCHHHHHHc
Confidence 5667655 56788744 469999999999999998776
No 39
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=84.88 E-value=4 Score=35.86 Aligned_cols=104 Identities=10% Similarity=0.156 Sum_probs=69.0
Q ss_pred eecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCC
Q 040562 84 IIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSA 163 (427)
Q Consensus 84 ~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~ 163 (427)
....+|-|.++..|- +|++..++|||-+.+-+..+... .-.|+.....
T Consensus 99 ak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~--------RlGid~~~l~---------------------- 146 (215)
T COG3577 99 AKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR--------RLGIDLNSLD---------------------- 146 (215)
T ss_pred EecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH--------HhCCCccccC----------------------
Confidence 345688999999998 89999999999999888554322 1123333211
Q ss_pred CCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCChhHHhhh
Q 040562 164 EGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASLISQMK 237 (427)
Q Consensus 164 ~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~ 237 (427)
.++.+.-.+|...-..+-.|.|.||+. .+.|+.=-++..- ....-+|||+ |+++|+
T Consensus 147 ---y~~~v~TANG~~~AA~V~Ld~v~IG~I-----~~~nV~A~V~~~g-----~L~~sLLGMS-----fL~rL~ 202 (215)
T COG3577 147 ---YTITVSTANGRARAAPVTLDRVQIGGI-----RVKNVDAMVAEDG-----ALDESLLGMS-----FLNRLS 202 (215)
T ss_pred ---CceEEEccCCccccceEEeeeEEEccE-----EEcCchhheecCC-----ccchhhhhHH-----HHhhcc
Confidence 455666678877757788999999987 7776654444322 1223456654 666654
No 40
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=84.38 E-value=1.5 Score=33.86 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=24.1
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceeeeCCCC
Q 040562 92 LIRISIGTPPVEILAVADTGSDLIWTQCQPC 122 (427)
Q Consensus 92 ~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c 122 (427)
+.+|.|. .+++.+++||||+.+-++...+
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccccc
Confidence 5678888 6899999999999999976543
No 41
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=82.55 E-value=1.9 Score=37.91 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=53.0
Q ss_pred CCcEEEccCCccccccHHHH-HHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCe
Q 040562 306 GGDIVIDSGTTLTYLPPAYA-SKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDL 384 (427)
Q Consensus 306 ~~~~iiDSGt~~~~lp~~~~-~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~ 384 (427)
...++||||.+.-.....+. +.++...........+......=. ...+.+.+.++|..|.+|-- ++.
T Consensus 20 ~~~~~vDTGAt~C~~~~~iiP~e~we~~~~~i~v~~an~~~~~i~-----~~~~~~~i~I~~~~F~IP~i---Yq~---- 87 (201)
T PF02160_consen 20 NYHCYVDTGATICCASKKIIPEEYWEKSKKPIKVKGANGSIIQIN-----KKAKNGKIQIADKIFRIPTI---YQQ---- 87 (201)
T ss_pred EEEEEEeCCCceEEecCCcCCHHHHHhCCCcEEEEEecCCceEEE-----EEecCceEEEccEEEeccEE---EEe----
Confidence 34679999999877655444 222222221111111100000000 13566777777777766633 221
Q ss_pred EEEEEEeCCCcceechhhhcceEEEEeCCCCEEEEee
Q 040562 385 VCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKP 421 (427)
Q Consensus 385 ~C~~i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 421 (427)
.++-..|||.+|+|.|+=...++ .+|-|-.
T Consensus 88 ------~~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 88 ------ESGIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred ------cCCCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 12467999999999887766665 4677754
No 42
>PF13650 Asp_protease_2: Aspartyl protease
Probab=78.11 E-value=3 Score=31.09 Aligned_cols=29 Identities=24% Similarity=0.543 Sum_probs=23.6
Q ss_pred EEecceEeeeeccCCCCCcEEEccCCccccccHHHHHHH
Q 040562 290 ISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKL 328 (427)
Q Consensus 290 i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i 328 (427)
++|+|+.+ .++||||++.+.+.++.++++
T Consensus 3 v~vng~~~----------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV----------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE----------EEEEcCCCCcEEECHHHHHHc
Confidence 56777643 479999999999999998776
No 43
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=77.70 E-value=3.1 Score=31.45 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.1
Q ss_pred EEEeCCCCcEEEEEEEcCCCceeeeCC
Q 040562 94 RISIGTPPVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 94 ~i~iGtP~q~~~l~~DTGS~~~Wv~~~ 120 (427)
.+.|+ .|.+.+++|||++++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46677 79999999999999999654
No 44
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=74.85 E-value=4.5 Score=30.62 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=25.0
Q ss_pred EEEecceEeeeeccCCCCCcEEEccCCccccccHHHHHHH
Q 040562 289 AISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKL 328 (427)
Q Consensus 289 ~i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i 328 (427)
.+.|+|+.+. +.+|||++.+.++++.+.++
T Consensus 4 ~~~Ing~~i~----------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK----------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE----------EEEcCCcceEEeCHHHHHHh
Confidence 3678888654 59999999999999998877
No 45
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=73.88 E-value=9.4 Score=32.36 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.0
Q ss_pred CCcEEEccCCccccccHHHHHHH
Q 040562 306 GGDIVIDSGTTLTYLPPAYASKL 328 (427)
Q Consensus 306 ~~~~iiDSGt~~~~lp~~~~~~i 328 (427)
...+++|||++..++-.++.+.|
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhh
Confidence 45689999999999999988777
No 46
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=70.15 E-value=8.2 Score=27.85 Aligned_cols=29 Identities=24% Similarity=0.622 Sum_probs=23.9
Q ss_pred EEecceEeeeeccCCCCCcEEEccCCccccccHHHHHHH
Q 040562 290 ISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKL 328 (427)
Q Consensus 290 i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i 328 (427)
+.|++..+ .+++|||.+..+++.+.++++
T Consensus 13 ~~I~g~~~----------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV----------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE----------EEEEeCCCcceecCHHHHHHh
Confidence 56677543 479999999999999998887
No 47
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=69.57 E-value=8.4 Score=28.95 Aligned_cols=29 Identities=21% Similarity=0.508 Sum_probs=23.1
Q ss_pred EEecceEeeeeccCCCCCcEEEccCCccccccHHHHHHH
Q 040562 290 ISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKL 328 (427)
Q Consensus 290 i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i 328 (427)
+.||++.+ .+++|||++.+.++.+..+++
T Consensus 7 v~i~~~~~----------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPV----------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEE----------EEEEECCCCcEEcCHHHHHHc
Confidence 56776543 479999999999999887765
No 48
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=66.30 E-value=7.2 Score=29.23 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=23.7
Q ss_pred EEecceEeeeeccCCCCCcEEEccCCccccccHHHHHHH
Q 040562 290 ISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKL 328 (427)
Q Consensus 290 i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i 328 (427)
+.|||+.+. +++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~----------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV----------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE----------EEEECCCCeEEECHHHhhhc
Confidence 567777544 59999999999999998775
No 49
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=62.79 E-value=15 Score=32.40 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=29.4
Q ss_pred CccEEEEeeEEEecceEeeeeccCCCCCcEEEccCCccccccHHHHHHH
Q 040562 280 KTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKL 328 (427)
Q Consensus 280 ~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i 328 (427)
.+||.++ ..|||+.+. .++|||.|.+.++++..+++
T Consensus 103 ~GHF~a~---~~VNGk~v~----------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD----------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE----------EEEecCcceeecCHHHHHHh
Confidence 6777655 678998765 49999999999999987766
No 50
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=57.50 E-value=14 Score=31.28 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=23.0
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCC
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~ 120 (427)
=...+.+++-..+++++|||||..-.+...
T Consensus 33 ~T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 33 KTAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred cEEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 345555666689999999999999888554
No 51
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=51.75 E-value=9.7 Score=30.61 Aligned_cols=20 Identities=50% Similarity=0.692 Sum_probs=18.3
Q ss_pred EEEccCCc-cccccHHHHHHH
Q 040562 309 IVIDSGTT-LTYLPPAYASKL 328 (427)
Q Consensus 309 ~iiDSGt~-~~~lp~~~~~~i 328 (427)
.+||||.+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999999887
No 52
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=42.66 E-value=27 Score=26.62 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.3
Q ss_pred CCcEEEccCCccccccHHHHHHHH
Q 040562 306 GGDIVIDSGTTLTYLPPAYASKLL 329 (427)
Q Consensus 306 ~~~~iiDSGt~~~~lp~~~~~~i~ 329 (427)
...+.+|||++...+|...++.+.
T Consensus 10 ~v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 10 SVKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEEEEEecCCEEEeccHHHHhhhc
Confidence 345799999999999999888773
No 53
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=39.98 E-value=26 Score=26.77 Aligned_cols=26 Identities=8% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEecceEeeeeccCCCCCcEEEccCCccccccHHH
Q 040562 289 AISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAY 324 (427)
Q Consensus 289 ~i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~ 324 (427)
.|.++++.+ .++||||+..+.++.+.
T Consensus 9 ~v~i~g~~i----------~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKI----------KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEE----------EEEEETTBSSEEESSGG
T ss_pred EEeECCEEE----------EEEEecCCCcceecccc
Confidence 356677644 47999999999999764
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=39.47 E-value=52 Score=26.68 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=24.1
Q ss_pred CccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC
Q 040562 88 VGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCP 123 (427)
Q Consensus 88 ~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~ 123 (427)
...+|+++.|+ .+++++++|||.-.+-+..+-+.
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~ 55 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAE 55 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHHHHH
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHH
Confidence 45789999999 79999999999999988665333
No 55
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=38.53 E-value=40 Score=24.87 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=10.3
Q ss_pred HHHhhccccccCCCceEEE
Q 040562 14 LCLSVLSPAEAQTVGFSVE 32 (427)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~ 32 (427)
|+.+++|+....+..+.++
T Consensus 15 LtVALAAPsQKsKRSVtve 33 (100)
T PF05984_consen 15 LTVALAAPSQKSKRSVTVE 33 (100)
T ss_pred HHHHhhccccccccceeec
Confidence 6666666655444444443
No 56
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=38.45 E-value=40 Score=27.36 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=22.4
Q ss_pred EEecceEeeeeccCCCCCcEEEccCCccccccHHHHHHH
Q 040562 290 ISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKL 328 (427)
Q Consensus 290 i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i 328 (427)
+++||+.+ .|+||||+..+.++.+.++++
T Consensus 29 ~~ing~~v----------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPV----------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEE----------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEE----------EEEEeCCCCccccCHHHHHHc
Confidence 56777754 479999999999999998875
No 57
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=35.33 E-value=51 Score=25.86 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=20.1
Q ss_pred EEEEeCCCC----cEEEEEEEcCCCcee-eeC
Q 040562 93 IRISIGTPP----VEILAVADTGSDLIW-TQC 119 (427)
Q Consensus 93 ~~i~iGtP~----q~~~l~~DTGS~~~W-v~~ 119 (427)
++|.|..|. -++.+++|||.+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 678888872 367899999999764 533
No 58
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=32.07 E-value=52 Score=20.25 Aligned_cols=19 Identities=37% Similarity=0.558 Sum_probs=8.2
Q ss_pred CcchhhHHHHHHHHHHhhcc
Q 040562 1 METFLSCAFILFFLCLSVLS 20 (427)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~ 20 (427)
|+.. ++.+++++++++++.
T Consensus 1 Mk~l-~~a~~l~lLal~~a~ 19 (36)
T PF08194_consen 1 MKCL-SLAFALLLLALAAAV 19 (36)
T ss_pred Ccee-HHHHHHHHHHHHhcc
Confidence 7744 343333334344333
No 59
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=31.87 E-value=1.6e+02 Score=23.27 Aligned_cols=37 Identities=19% Similarity=0.445 Sum_probs=24.4
Q ss_pred ecCcEEEEeEeecCCCC-CCCCceEeecCCCCChhHHh
Q 040562 199 ALPEIVFGCGTKNGGKF-NSKTDGIVGLGGGDASLISQ 235 (427)
Q Consensus 199 ~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~sl~~q 235 (427)
..+++.|--++...+.+ +....-+.||+++...-.++
T Consensus 61 i~~~~~y~kas~~FhQWrD~R~~tVyGLnF~Sk~ea~~ 98 (111)
T cd01206 61 ITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEQQLTK 98 (111)
T ss_pred ccCCcceeecccccccccccccceeeecccCCHHHHHH
Confidence 56677776555555544 45566999999987654433
No 60
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=25.38 E-value=3.1e+02 Score=20.85 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=17.6
Q ss_pred cEEEEEEEcCCCceeeeCCCCC
Q 040562 102 VEILAVADTGSDLIWTQCQPCP 123 (427)
Q Consensus 102 q~~~l~~DTGS~~~Wv~~~~c~ 123 (427)
.....++|||+...-+|...+.
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCcEEEEeCCCceEeecccccc
Confidence 3467899999999999877554
No 61
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=24.36 E-value=4.7e+02 Score=25.41 Aligned_cols=38 Identities=24% Similarity=0.188 Sum_probs=30.2
Q ss_pred EEEE-EEeC-CCcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 385 VCSV-FNAR-DDIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 385 ~C~~-i~~~-~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
.|-. +... +-...||.-.||.+--.-|++++++-|+..
T Consensus 307 ~c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 307 PCSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred ccceEEecCCCcchhhhHHHHHhccceeecccCeEEecCC
Confidence 3744 5554 367889999999999999999999877654
No 62
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=22.94 E-value=93 Score=28.84 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=22.7
Q ss_pred ccEEEE---EEeCC---CCcEEEEEEEcCCCceeeeCC
Q 040562 89 GEYLIR---ISIGT---PPVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 89 ~~Y~~~---i~iGt---P~q~~~l~~DTGS~~~Wv~~~ 120 (427)
..|.++ |+||. +.....+++|||++++.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 456554 68873 223457899999999999764
No 63
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=22.73 E-value=1.3e+02 Score=27.58 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=14.7
Q ss_pred EEEEEEEcCCCceeeeCC
Q 040562 103 EILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 103 ~~~l~~DTGS~~~Wv~~~ 120 (427)
...+++|||++++.++..
T Consensus 176 ~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 176 SGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCcEEEeCCCcceEcCcc
Confidence 346899999999999654
No 64
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.26 E-value=60 Score=24.99 Aligned_cols=12 Identities=8% Similarity=0.168 Sum_probs=5.2
Q ss_pred CcchhhHHHHHHH
Q 040562 1 METFLSCAFILFF 13 (427)
Q Consensus 1 M~~~~~~~~~~~~ 13 (427)
|.+. +|++|+++
T Consensus 1 MaSK-~~llL~l~ 12 (95)
T PF07172_consen 1 MASK-AFLLLGLL 12 (95)
T ss_pred Cchh-HHHHHHHH
Confidence 6633 34444333
Done!